Query 001145
Match_columns 1141
No_of_seqs 628 out of 4581
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 17:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.4E-86 7.3E-91 792.0 38.4 782 8-849 3-848 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.4E-64 1.8E-68 637.9 50.8 698 119-1056 134-908 (1153)
3 PLN00113 leucine-rich repeat r 100.0 7.6E-42 1.6E-46 439.8 29.0 505 491-1100 69-582 (968)
4 PLN00113 leucine-rich repeat r 100.0 4.7E-39 1E-43 414.0 26.3 507 490-1102 92-607 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 2.8E-40 6E-45 362.6 12.2 252 166-424 1-286 (287)
6 KOG4194 Membrane glycoprotein 100.0 2.3E-29 4.9E-34 268.2 3.1 181 893-1074 265-448 (873)
7 KOG4194 Membrane glycoprotein 99.9 3.9E-28 8.5E-33 258.8 3.9 254 722-1052 193-450 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 8.4E-31 1.8E-35 267.1 -15.7 465 497-1078 74-541 (565)
9 KOG0444 Cytoskeletal regulator 99.9 9.9E-29 2.1E-33 264.5 -6.0 371 539-1082 5-379 (1255)
10 KOG0618 Serine/threonine phosp 99.9 2.1E-28 4.6E-33 275.7 -4.3 492 504-1126 10-508 (1081)
11 KOG0472 Leucine-rich repeat pr 99.9 5.9E-30 1.3E-34 261.0 -15.9 480 517-1100 47-539 (565)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3E-27 260.0 33.3 353 508-1032 551-908 (1153)
13 KOG0444 Cytoskeletal regulator 99.9 1.4E-26 3E-31 248.2 -7.0 369 561-1103 4-376 (1255)
14 KOG0618 Serine/threonine phosp 99.9 1.4E-25 3E-30 253.2 -7.0 453 516-1075 46-510 (1081)
15 KOG4237 Extracellular matrix p 99.7 4.9E-18 1.1E-22 174.4 -2.8 135 503-642 57-195 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 1.7E-15 3.6E-20 179.3 14.6 72 541-621 201-272 (788)
17 KOG0617 Ras suppressor protein 99.5 7.9E-17 1.7E-21 145.9 -7.1 186 918-1109 30-222 (264)
18 PRK15387 E3 ubiquitin-protein 99.5 1.4E-13 3E-18 163.2 17.4 263 727-1085 202-465 (788)
19 PRK15370 E3 ubiquitin-protein 99.5 6.9E-14 1.5E-18 167.1 11.6 74 541-621 178-251 (754)
20 KOG0617 Ras suppressor protein 99.4 3.7E-15 8.1E-20 135.1 -5.3 184 893-1082 29-216 (264)
21 PRK15370 E3 ubiquitin-protein 99.4 6.1E-13 1.3E-17 159.1 10.9 162 898-1078 263-428 (754)
22 cd00116 LRR_RI Leucine-rich re 99.4 6E-14 1.3E-18 157.1 -1.1 183 918-1100 78-289 (319)
23 KOG4237 Extracellular matrix p 99.3 5.1E-14 1.1E-18 145.3 -2.8 209 891-1100 109-357 (498)
24 cd00116 LRR_RI Leucine-rich re 99.3 3.1E-13 6.6E-18 151.4 0.2 254 847-1100 20-318 (319)
25 KOG4658 Apoptotic ATPase [Sign 99.3 2.6E-12 5.6E-17 156.2 6.1 129 513-646 521-653 (889)
26 PRK00080 ruvB Holliday junctio 99.0 1.3E-09 2.8E-14 120.7 11.6 258 161-448 25-309 (328)
27 PRK04841 transcriptional regul 99.0 1.3E-08 2.7E-13 131.5 22.4 267 161-474 14-332 (903)
28 TIGR00635 ruvB Holliday juncti 99.0 3.1E-09 6.6E-14 117.4 11.7 258 161-448 4-288 (305)
29 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.2E-15 122.0 0.5 204 895-1100 119-337 (505)
30 KOG4341 F-box protein containi 98.9 1.1E-10 2.4E-15 122.2 -4.0 234 893-1132 212-463 (483)
31 PF01637 Arch_ATPase: Archaeal 98.8 6E-09 1.3E-13 110.7 8.5 169 163-342 1-233 (234)
32 PRK00411 cdc6 cell division co 98.8 2.8E-07 6.1E-12 106.0 20.8 286 159-462 28-373 (394)
33 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3.1E-14 114.7 0.6 207 892-1099 141-364 (505)
34 COG2256 MGS1 ATPase related to 98.8 3.3E-08 7.1E-13 104.3 10.2 169 157-340 26-209 (436)
35 PF05729 NACHT: NACHT domain 98.7 4.8E-08 1E-12 97.3 10.2 123 190-312 1-163 (166)
36 KOG0532 Leucine-rich repeat (L 98.7 5.9E-10 1.3E-14 121.1 -4.4 191 899-1099 77-270 (722)
37 PRK06893 DNA replication initi 98.7 1.5E-07 3.1E-12 98.1 13.4 150 190-344 40-204 (229)
38 TIGR03015 pepcterm_ATPase puta 98.7 4.7E-07 1E-11 98.2 17.5 156 189-347 43-242 (269)
39 KOG4341 F-box protein containi 98.7 3.6E-10 7.7E-15 118.5 -6.8 155 943-1097 292-460 (483)
40 KOG0532 Leucine-rich repeat (L 98.7 1E-09 2.2E-14 119.3 -3.7 114 525-642 83-196 (722)
41 PRK13342 recombination factor 98.7 1.6E-07 3.5E-12 107.3 13.6 169 161-344 12-197 (413)
42 PF05496 RuvB_N: Holliday junc 98.6 4.3E-07 9.3E-12 89.8 12.1 175 161-345 24-223 (233)
43 PF14580 LRR_9: Leucine-rich r 98.6 4.8E-08 1E-12 94.9 5.0 128 513-647 17-152 (175)
44 COG4886 Leucine-rich repeat (L 98.5 5.1E-08 1.1E-12 112.3 4.6 104 537-642 112-216 (394)
45 TIGR02928 orc1/cdc6 family rep 98.5 3.7E-06 8E-11 95.7 19.6 273 160-450 14-351 (365)
46 KOG1259 Nischarin, modulator o 98.5 1.7E-08 3.7E-13 100.8 0.5 181 893-1080 210-414 (490)
47 TIGR03420 DnaA_homol_Hda DnaA 98.5 1E-06 2.3E-11 92.6 12.7 167 166-344 22-202 (226)
48 PF14580 LRR_9: Leucine-rich r 98.5 5.1E-08 1.1E-12 94.7 2.4 12 922-933 20-31 (175)
49 KOG1259 Nischarin, modulator o 98.5 2.3E-08 5.1E-13 99.9 -0.5 129 921-1055 284-413 (490)
50 KOG1909 Ran GTPase-activating 98.5 3.3E-08 7.1E-13 101.9 -0.0 233 868-1100 26-309 (382)
51 PLN03150 hypothetical protein; 98.4 2E-07 4.4E-12 112.0 6.4 113 970-1082 419-532 (623)
52 COG2909 MalT ATP-dependent tra 98.4 3E-06 6.6E-11 98.2 15.4 262 172-474 26-338 (894)
53 COG4886 Leucine-rich repeat (L 98.4 1.2E-07 2.7E-12 109.1 4.3 183 893-1083 112-295 (394)
54 KOG1909 Ran GTPase-activating 98.4 2.6E-08 5.7E-13 102.5 -2.1 228 849-1077 29-310 (382)
55 PLN03150 hypothetical protein; 98.4 4.2E-07 9.2E-12 109.3 7.5 113 946-1058 419-532 (623)
56 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.6E-11 82.1 8.8 110 190-304 3-127 (128)
57 COG3899 Predicted ATPase [Gene 98.4 5.6E-06 1.2E-10 102.1 16.6 287 162-472 1-384 (849)
58 PRK12402 replication factor C 98.3 6E-06 1.3E-10 93.0 14.8 172 161-342 15-225 (337)
59 PRK14960 DNA polymerase III su 98.3 7.5E-06 1.6E-10 94.4 15.2 174 161-342 15-218 (702)
60 PRK05564 DNA polymerase III su 98.3 1.4E-05 2.9E-10 88.2 16.5 171 161-343 4-190 (313)
61 PRK08727 hypothetical protein; 98.3 7.8E-06 1.7E-10 85.4 13.7 146 190-340 42-201 (233)
62 PRK14961 DNA polymerase III su 98.3 1.1E-05 2.3E-10 90.7 15.5 173 161-341 16-218 (363)
63 TIGR02903 spore_lon_C ATP-depe 98.3 2.2E-05 4.8E-10 93.6 19.0 177 161-346 154-398 (615)
64 PRK07003 DNA polymerase III su 98.3 9.3E-06 2E-10 94.6 14.8 175 161-343 16-221 (830)
65 PRK14963 DNA polymerase III su 98.3 6.4E-06 1.4E-10 95.2 13.5 172 161-340 14-214 (504)
66 cd00009 AAA The AAA+ (ATPases 98.3 3.6E-06 7.7E-11 82.0 10.0 111 164-283 1-131 (151)
67 PRK04195 replication factor C 98.3 4.6E-05 1E-09 89.2 20.3 237 161-423 14-272 (482)
68 PLN03025 replication factor C 98.3 9.5E-06 2.1E-10 89.6 13.7 171 161-341 13-198 (319)
69 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 68.8 5.1 39 1037-1075 21-59 (61)
70 PRK14949 DNA polymerase III su 98.2 2E-05 4.4E-10 93.8 16.2 175 161-343 16-220 (944)
71 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.8E-11 68.6 5.0 60 993-1052 1-60 (61)
72 KOG2028 ATPase related to the 98.2 5.2E-06 1.1E-10 85.9 9.4 166 156-338 139-331 (554)
73 PRK12323 DNA polymerase III su 98.2 1.6E-05 3.5E-10 91.5 14.0 175 161-343 16-225 (700)
74 PRK06645 DNA polymerase III su 98.2 2.6E-05 5.7E-10 89.6 15.8 172 161-340 21-226 (507)
75 PRK08691 DNA polymerase III su 98.2 1.9E-05 4E-10 92.2 14.4 173 161-341 16-218 (709)
76 PRK13341 recombination factor 98.2 1.9E-05 4.2E-10 94.9 14.9 163 161-338 28-212 (725)
77 PRK09087 hypothetical protein; 98.2 1.8E-05 3.9E-10 81.8 12.4 139 190-342 45-194 (226)
78 PRK15386 type III secretion pr 98.2 6.6E-06 1.4E-10 89.9 9.2 138 893-1051 48-187 (426)
79 PRK08084 DNA replication initi 98.1 2.8E-05 6E-10 81.4 13.4 149 190-343 46-209 (235)
80 PRK14957 DNA polymerase III su 98.1 4.6E-05 1E-09 88.2 16.4 178 161-346 16-224 (546)
81 KOG2120 SCF ubiquitin ligase, 98.1 4.8E-08 1E-12 97.9 -6.8 157 941-1099 206-373 (419)
82 PRK15386 type III secretion pr 98.1 9.8E-06 2.1E-10 88.6 9.9 162 917-1103 48-214 (426)
83 PRK00440 rfc replication facto 98.1 3.6E-05 7.7E-10 86.0 14.6 170 161-341 17-201 (319)
84 PRK08903 DnaA regulatory inact 98.1 4.8E-05 1E-09 79.8 14.3 151 190-347 43-203 (227)
85 TIGR02397 dnaX_nterm DNA polym 98.1 7.9E-05 1.7E-09 84.5 16.7 175 161-344 14-219 (355)
86 KOG2120 SCF ubiquitin ligase, 98.1 6E-08 1.3E-12 97.2 -7.9 179 897-1077 185-375 (419)
87 PRK14956 DNA polymerase III su 98.1 6.2E-05 1.3E-09 84.6 14.5 171 161-339 18-218 (484)
88 PRK07940 DNA polymerase III su 98.0 9E-05 1.9E-09 82.9 15.7 176 161-344 5-214 (394)
89 PRK14955 DNA polymerase III su 98.0 4.9E-05 1.1E-09 86.4 13.8 172 161-341 16-226 (397)
90 PRK05642 DNA replication initi 98.0 7.3E-05 1.6E-09 78.1 13.9 150 190-344 46-209 (234)
91 PRK14962 DNA polymerase III su 98.0 6.9E-05 1.5E-09 86.0 14.8 178 161-346 14-222 (472)
92 PRK07471 DNA polymerase III su 98.0 0.00013 2.8E-09 80.9 16.2 172 161-344 19-239 (365)
93 PRK14951 DNA polymerase III su 98.0 8.4E-05 1.8E-09 87.3 15.2 174 161-342 16-224 (618)
94 TIGR01242 26Sp45 26S proteasom 98.0 2.2E-05 4.7E-10 88.6 10.1 173 160-337 121-328 (364)
95 PRK07994 DNA polymerase III su 98.0 7.1E-05 1.5E-09 88.1 14.5 175 161-343 16-220 (647)
96 TIGR00678 holB DNA polymerase 98.0 0.00012 2.5E-09 74.2 14.4 142 189-339 14-187 (188)
97 PRK14964 DNA polymerase III su 98.0 0.0001 2.2E-09 84.1 15.1 172 161-340 13-214 (491)
98 PRK09112 DNA polymerase III su 98.0 0.00016 3.5E-09 79.7 16.2 174 161-344 23-241 (351)
99 PRK05896 DNA polymerase III su 98.0 9.5E-05 2.1E-09 85.6 14.5 176 161-345 16-223 (605)
100 PRK14958 DNA polymerase III su 98.0 0.0001 2.2E-09 85.6 14.8 174 161-342 16-219 (509)
101 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 59.1 3.4 38 542-579 2-39 (44)
102 PRK09111 DNA polymerase III su 97.9 0.00015 3.3E-09 85.5 15.2 174 161-342 24-232 (598)
103 PRK14969 DNA polymerase III su 97.9 0.00023 4.9E-09 83.4 15.9 177 161-345 16-223 (527)
104 PRK14954 DNA polymerase III su 97.8 0.0003 6.4E-09 83.1 16.1 176 161-344 16-230 (620)
105 PRK14087 dnaA chromosomal repl 97.8 0.00016 3.6E-09 82.9 13.7 155 190-345 142-321 (450)
106 COG2255 RuvB Holliday junction 97.8 0.00012 2.6E-09 74.0 10.4 172 161-343 26-223 (332)
107 PF00308 Bac_DnaA: Bacterial d 97.8 0.00017 3.8E-09 74.3 12.0 172 160-341 8-206 (219)
108 KOG0531 Protein phosphatase 1, 97.8 3.9E-06 8.6E-11 96.6 -0.2 108 893-1006 91-199 (414)
109 PRK14970 DNA polymerase III su 97.8 0.00033 7.1E-09 79.5 15.3 172 161-340 17-206 (367)
110 PRK11331 5-methylcytosine-spec 97.8 0.00011 2.4E-09 81.5 10.8 98 161-267 175-298 (459)
111 PRK06620 hypothetical protein; 97.8 0.00059 1.3E-08 70.0 15.4 135 190-340 45-186 (214)
112 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6.1E-10 56.1 3.9 40 564-604 1-40 (44)
113 PRK06305 DNA polymerase III su 97.8 0.00035 7.6E-09 80.2 15.0 174 161-343 17-223 (451)
114 cd01128 rho_factor Transcripti 97.8 4.3E-05 9.3E-10 79.6 6.7 40 190-230 17-56 (249)
115 PRK14959 DNA polymerase III su 97.8 0.00048 1E-08 80.4 15.8 178 161-347 16-225 (624)
116 PRK07764 DNA polymerase III su 97.8 0.00042 9E-09 84.7 15.9 171 161-340 15-218 (824)
117 PRK07133 DNA polymerase III su 97.8 0.00058 1.2E-08 81.0 16.5 175 161-344 18-221 (725)
118 KOG1859 Leucine-rich repeat pr 97.7 7.7E-07 1.7E-11 100.0 -7.0 196 894-1100 81-290 (1096)
119 PRK14952 DNA polymerase III su 97.7 0.00064 1.4E-08 79.7 16.5 178 161-347 13-224 (584)
120 KOG0989 Replication factor C, 97.7 0.00015 3.2E-09 74.4 9.6 174 161-343 36-231 (346)
121 PTZ00112 origin recognition co 97.7 0.00018 3.9E-09 84.6 11.5 151 160-313 754-950 (1164)
122 PRK08451 DNA polymerase III su 97.7 0.00058 1.3E-08 78.8 15.6 174 161-343 14-218 (535)
123 PRK09376 rho transcription ter 97.7 3.7E-05 8E-10 83.2 5.5 53 172-231 158-210 (416)
124 PHA02544 44 clamp loader, smal 97.7 0.00037 7.9E-09 77.5 13.8 139 161-310 21-171 (316)
125 PRK14971 DNA polymerase III su 97.7 0.00052 1.1E-08 81.7 15.6 171 161-340 17-219 (614)
126 KOG0531 Protein phosphatase 1, 97.7 7.3E-06 1.6E-10 94.4 -0.1 196 893-1100 114-316 (414)
127 PRK06647 DNA polymerase III su 97.7 0.00074 1.6E-08 79.4 16.2 173 161-342 16-219 (563)
128 PRK14950 DNA polymerase III su 97.7 0.00075 1.6E-08 80.7 16.4 173 161-342 16-220 (585)
129 PRK14953 DNA polymerase III su 97.7 0.0011 2.5E-08 76.5 17.0 175 161-343 16-220 (486)
130 KOG1859 Leucine-rich repeat pr 97.7 4.3E-07 9.3E-12 102.0 -10.4 84 940-1029 182-266 (1096)
131 PRK03992 proteasome-activating 97.7 0.00018 4E-09 81.3 10.4 169 161-337 131-337 (389)
132 TIGR02880 cbbX_cfxQ probable R 97.7 0.00045 9.8E-09 74.4 12.6 122 191-312 60-208 (284)
133 CHL00181 cbbX CbbX; Provisiona 97.7 0.00071 1.5E-08 72.8 14.0 123 190-312 60-209 (287)
134 TIGR02881 spore_V_K stage V sp 97.6 0.00049 1.1E-08 73.6 12.5 150 162-312 7-191 (261)
135 TIGR02639 ClpA ATP-dependent C 97.6 0.00029 6.3E-09 86.8 12.0 143 161-312 182-358 (731)
136 PRK14948 DNA polymerase III su 97.6 0.0011 2.4E-08 78.9 16.0 174 161-343 16-222 (620)
137 KOG2982 Uncharacterized conser 97.6 3.4E-05 7.3E-10 78.0 2.5 81 1016-1097 198-287 (418)
138 PRK12422 chromosomal replicati 97.6 0.00085 1.9E-08 76.7 14.0 142 190-336 142-306 (445)
139 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0003 6.6E-09 87.2 11.0 142 161-311 187-362 (852)
140 COG3903 Predicted ATPase [Gene 97.5 4.3E-05 9.3E-10 82.1 2.8 209 188-404 13-256 (414)
141 PF13401 AAA_22: AAA domain; P 97.5 0.00012 2.7E-09 69.2 5.5 91 189-281 4-125 (131)
142 PRK05563 DNA polymerase III su 97.5 0.0019 4.1E-08 76.5 16.2 172 161-341 16-218 (559)
143 PRK14965 DNA polymerase III su 97.5 0.0015 3.3E-08 77.6 15.3 176 161-345 16-223 (576)
144 PTZ00202 tuzin; Provisional 97.5 0.0027 5.8E-08 69.4 15.3 51 158-212 259-309 (550)
145 PRK07399 DNA polymerase III su 97.4 0.0026 5.7E-08 69.2 15.0 172 161-343 4-221 (314)
146 TIGR00362 DnaA chromosomal rep 97.4 0.0012 2.6E-08 75.8 13.1 145 190-339 137-306 (405)
147 CHL00095 clpC Clp protease ATP 97.4 0.00075 1.6E-08 84.3 11.4 142 161-311 179-353 (821)
148 PF00004 AAA: ATPase family as 97.4 0.00047 1E-08 65.3 7.5 85 192-281 1-111 (132)
149 KOG2982 Uncharacterized conser 97.4 6.2E-05 1.4E-09 76.1 1.2 207 918-1126 68-284 (418)
150 PRK05707 DNA polymerase III su 97.3 0.0038 8.2E-08 68.4 14.8 150 188-343 21-203 (328)
151 PF13191 AAA_16: AAA ATPase do 97.3 0.00016 3.4E-09 73.3 3.8 48 162-213 1-48 (185)
152 PRK14088 dnaA chromosomal repl 97.3 0.00095 2.1E-08 76.7 10.3 145 190-339 131-301 (440)
153 PRK00149 dnaA chromosomal repl 97.3 0.002 4.4E-08 74.9 13.2 146 190-340 149-319 (450)
154 PF05673 DUF815: Protein of un 97.3 0.0016 3.5E-08 65.9 10.3 104 159-269 25-134 (249)
155 PRK14086 dnaA chromosomal repl 97.3 0.0015 3.3E-08 76.0 11.4 145 191-338 316-483 (617)
156 PTZ00361 26 proteosome regulat 97.3 0.0015 3.2E-08 74.0 11.1 147 161-312 183-367 (438)
157 COG1373 Predicted ATPase (AAA+ 97.3 0.0024 5.2E-08 72.3 12.8 110 191-308 39-163 (398)
158 PRK11034 clpA ATP-dependent Cl 97.3 0.001 2.2E-08 80.9 9.9 143 161-312 186-362 (758)
159 PRK08118 topology modulation p 97.2 0.00025 5.4E-09 69.6 3.7 60 191-252 3-68 (167)
160 KOG4579 Leucine-rich repeat (L 97.2 4.9E-05 1.1E-09 67.7 -1.3 81 540-621 52-133 (177)
161 COG1474 CDC6 Cdc6-related prot 97.2 0.0037 7.9E-08 69.4 13.0 177 162-343 18-238 (366)
162 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0014 3.1E-08 82.1 10.9 142 161-311 173-348 (852)
163 TIGR00767 rho transcription te 97.2 0.00063 1.4E-08 74.4 6.4 40 190-230 169-208 (415)
164 PRK10536 hypothetical protein; 97.2 0.0012 2.7E-08 67.7 8.0 110 161-282 55-213 (262)
165 PRK08116 hypothetical protein; 97.2 0.00066 1.4E-08 72.2 6.3 88 191-281 116-220 (268)
166 PRK08058 DNA polymerase III su 97.1 0.0076 1.6E-07 66.6 14.7 143 162-311 6-181 (329)
167 PRK10865 protein disaggregatio 97.1 0.0029 6.3E-08 78.9 12.5 143 161-312 178-354 (857)
168 PF02562 PhoH: PhoH-like prote 97.1 0.00057 1.2E-08 68.3 5.1 106 165-282 4-156 (205)
169 PTZ00454 26S protease regulato 97.1 0.0029 6.4E-08 71.1 11.3 169 161-337 145-351 (398)
170 PHA00729 NTP-binding motif con 97.1 0.0022 4.9E-08 64.8 9.2 110 188-313 16-141 (226)
171 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0023 5E-08 79.5 11.1 120 160-281 565-718 (852)
172 KOG3665 ZYG-1-like serine/thre 97.1 0.00013 2.7E-09 87.6 -0.2 131 921-1053 122-262 (699)
173 PRK08181 transposase; Validate 97.0 0.00072 1.6E-08 71.4 5.2 90 191-282 108-209 (269)
174 PRK12377 putative replication 97.0 0.0018 3.8E-08 67.5 7.8 89 190-281 102-205 (248)
175 COG0542 clpA ATP-binding subun 97.0 0.003 6.6E-08 75.0 10.0 107 161-269 491-620 (786)
176 KOG4579 Leucine-rich repeat (L 97.0 0.00011 2.3E-09 65.7 -1.5 88 516-606 54-141 (177)
177 TIGR01241 FtsH_fam ATP-depende 97.0 0.011 2.3E-07 69.8 14.6 167 161-337 55-260 (495)
178 TIGR03689 pup_AAA proteasome A 97.0 0.006 1.3E-07 70.2 12.0 152 161-312 182-378 (512)
179 CHL00176 ftsH cell division pr 96.9 0.0073 1.6E-07 72.1 13.1 165 161-335 183-386 (638)
180 PRK08939 primosomal protein Dn 96.9 0.0022 4.8E-08 69.5 7.9 111 165-281 135-260 (306)
181 KOG0991 Replication factor C, 96.9 0.0034 7.4E-08 61.5 8.1 97 161-264 27-135 (333)
182 KOG1947 Leucine rich repeat pr 96.9 8.6E-05 1.9E-09 88.6 -3.5 195 893-1107 239-445 (482)
183 PRK13531 regulatory ATPase Rav 96.9 0.0039 8.4E-08 70.2 9.7 141 161-311 20-193 (498)
184 KOG3665 ZYG-1-like serine/thre 96.9 0.00066 1.4E-08 81.6 4.0 107 512-622 145-261 (699)
185 TIGR00763 lon ATP-dependent pr 96.9 0.054 1.2E-06 67.5 20.7 52 160-212 319-370 (775)
186 PF00910 RNA_helicase: RNA hel 96.9 0.0013 2.8E-08 59.1 4.9 60 192-255 1-62 (107)
187 PRK09183 transposase/IS protei 96.9 0.0014 2.9E-08 69.5 5.8 89 190-281 103-205 (259)
188 COG2607 Predicted ATPase (AAA+ 96.9 0.0072 1.6E-07 60.0 10.0 116 159-281 58-182 (287)
189 TIGR02639 ClpA ATP-dependent C 96.9 0.0047 1E-07 76.3 11.1 104 161-269 454-580 (731)
190 COG0593 DnaA ATPase involved i 96.9 0.0041 8.8E-08 68.7 9.2 149 158-313 85-258 (408)
191 PF13604 AAA_30: AAA domain; P 96.9 0.0061 1.3E-07 61.8 9.8 88 190-281 19-130 (196)
192 PF01695 IstB_IS21: IstB-like 96.8 0.0012 2.7E-08 65.4 4.7 89 189-281 47-149 (178)
193 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0057 1.2E-07 76.8 11.4 119 161-281 565-717 (852)
194 PRK08769 DNA polymerase III su 96.8 0.033 7.2E-07 60.4 15.6 163 168-344 11-209 (319)
195 PF04665 Pox_A32: Poxvirus A32 96.8 0.0059 1.3E-07 62.6 9.1 36 190-227 14-49 (241)
196 COG5238 RNA1 Ran GTPase-activa 96.8 0.00044 9.6E-09 69.2 0.9 186 893-1079 26-256 (388)
197 smart00382 AAA ATPases associa 96.8 0.005 1.1E-07 59.1 8.4 24 190-213 3-26 (148)
198 PF13177 DNA_pol3_delta2: DNA 96.8 0.014 3E-07 57.0 11.3 129 165-299 1-161 (162)
199 COG5238 RNA1 Ran GTPase-activa 96.8 0.00017 3.7E-09 72.1 -2.0 84 538-621 27-130 (388)
200 PRK07952 DNA replication prote 96.7 0.0038 8.3E-08 64.9 7.5 89 190-281 100-204 (244)
201 TIGR00602 rad24 checkpoint pro 96.7 0.012 2.6E-07 69.8 12.3 51 160-212 83-133 (637)
202 COG1222 RPT1 ATP-dependent 26S 96.7 0.025 5.4E-07 59.9 13.1 180 161-348 151-372 (406)
203 CHL00095 clpC Clp protease ATP 96.7 0.0076 1.7E-07 75.5 11.3 120 160-281 508-661 (821)
204 TIGR02640 gas_vesic_GvpN gas v 96.7 0.019 4.2E-07 61.2 12.7 35 168-211 9-43 (262)
205 KOG1644 U2-associated snRNP A' 96.7 0.0029 6.4E-08 61.0 5.6 13 1087-1099 138-150 (233)
206 PRK06921 hypothetical protein; 96.7 0.0018 3.9E-08 68.8 4.7 90 190-281 118-224 (266)
207 PRK06526 transposase; Provisio 96.7 0.0013 2.8E-08 69.2 3.5 90 190-282 99-201 (254)
208 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0019 4E-08 70.1 4.7 52 160-212 50-101 (361)
209 PF14532 Sigma54_activ_2: Sigm 96.7 0.0016 3.5E-08 61.9 3.8 108 164-282 1-110 (138)
210 PRK06871 DNA polymerase III su 96.6 0.055 1.2E-06 58.9 15.9 158 170-341 11-201 (325)
211 PRK06835 DNA replication prote 96.6 0.053 1.2E-06 59.3 15.6 88 190-281 184-288 (329)
212 PRK10787 DNA-binding ATP-depen 96.6 0.038 8.3E-07 68.0 16.2 150 160-312 321-506 (784)
213 KOG0741 AAA+-type ATPase [Post 96.6 0.0086 1.9E-07 66.1 9.1 136 188-333 537-704 (744)
214 COG0466 Lon ATP-dependent Lon 96.6 0.07 1.5E-06 62.0 16.6 151 159-312 321-508 (782)
215 PRK06090 DNA polymerase III su 96.6 0.081 1.8E-06 57.4 16.5 159 169-344 11-202 (319)
216 PF10443 RNA12: RNA12 protein; 96.6 0.036 7.9E-07 61.1 13.6 108 243-354 149-289 (431)
217 PRK07261 topology modulation p 96.5 0.0031 6.8E-08 62.3 5.0 60 191-252 2-67 (171)
218 PRK10865 protein disaggregatio 96.5 0.0098 2.1E-07 74.4 10.2 119 161-281 568-720 (857)
219 KOG2227 Pre-initiation complex 96.5 0.015 3.2E-07 63.7 10.0 152 159-313 148-339 (529)
220 COG1223 Predicted ATPase (AAA+ 96.5 0.041 8.9E-07 55.3 12.1 167 161-336 121-318 (368)
221 KOG1947 Leucine rich repeat pr 96.4 0.00033 7.1E-09 83.6 -3.1 199 895-1103 186-415 (482)
222 PF14516 AAA_35: AAA-like doma 96.4 0.032 6.9E-07 61.8 12.7 174 161-350 11-246 (331)
223 PRK06964 DNA polymerase III su 96.4 0.066 1.4E-06 58.7 14.7 95 240-344 130-226 (342)
224 PF00158 Sigma54_activat: Sigm 96.4 0.013 2.8E-07 57.4 8.3 111 163-281 1-143 (168)
225 KOG0734 AAA+-type ATPase conta 96.4 0.011 2.4E-07 65.3 8.3 84 162-251 305-405 (752)
226 KOG1644 U2-associated snRNP A' 96.4 0.0035 7.5E-08 60.5 3.9 84 537-621 60-150 (233)
227 PRK07993 DNA polymerase III su 96.4 0.097 2.1E-06 57.7 15.8 161 169-343 10-204 (334)
228 PHA02244 ATPase-like protein 96.3 0.031 6.7E-07 60.8 11.4 83 191-281 121-230 (383)
229 PRK11034 clpA ATP-dependent Cl 96.3 0.014 3.1E-07 71.0 10.1 104 161-269 458-584 (758)
230 PF05659 RPW8: Arabidopsis bro 96.3 0.059 1.3E-06 50.8 11.9 82 2-83 3-85 (147)
231 TIGR01243 CDC48 AAA family ATP 96.3 0.026 5.6E-07 70.2 12.6 170 161-338 178-382 (733)
232 KOG2739 Leucine-rich acidic nu 96.3 0.0018 3.8E-08 65.5 1.8 109 537-647 39-155 (260)
233 KOG2004 Mitochondrial ATP-depe 96.3 0.057 1.2E-06 62.3 13.5 52 159-211 409-460 (906)
234 TIGR02902 spore_lonB ATP-depen 96.2 0.017 3.7E-07 68.2 9.7 43 162-211 66-108 (531)
235 PF13207 AAA_17: AAA domain; P 96.2 0.0032 7E-08 58.4 2.9 21 191-211 1-21 (121)
236 cd01133 F1-ATPase_beta F1 ATP 96.2 0.0083 1.8E-07 62.8 5.8 38 191-230 71-109 (274)
237 COG0542 clpA ATP-binding subun 96.2 0.02 4.4E-07 68.3 9.6 143 161-311 170-345 (786)
238 COG2884 FtsE Predicted ATPase 96.1 0.034 7.4E-07 53.4 9.2 55 234-288 147-203 (223)
239 KOG1969 DNA replication checkp 96.1 0.014 3.1E-07 67.2 8.0 76 187-267 324-412 (877)
240 CHL00195 ycf46 Ycf46; Provisio 96.1 0.033 7.1E-07 64.4 10.9 171 161-337 228-429 (489)
241 TIGR01817 nifA Nif-specific re 96.1 0.048 1E-06 65.2 12.7 115 159-281 194-340 (534)
242 COG1484 DnaC DNA replication p 96.1 0.0075 1.6E-07 63.5 5.1 69 190-260 106-185 (254)
243 PRK11608 pspF phage shock prot 96.0 0.032 6.9E-07 61.6 10.0 113 161-281 6-150 (326)
244 PF13671 AAA_33: AAA domain; P 96.0 0.017 3.6E-07 55.5 6.9 21 191-211 1-21 (143)
245 TIGR02974 phageshock_pspF psp 96.0 0.035 7.5E-07 61.3 10.1 111 163-281 1-143 (329)
246 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.059 1.3E-06 51.5 10.5 95 190-286 27-131 (144)
247 PF07728 AAA_5: AAA domain (dy 96.0 0.011 2.3E-07 56.4 5.3 70 192-267 2-90 (139)
248 TIGR01243 CDC48 AAA family ATP 96.0 0.06 1.3E-06 67.0 13.1 169 161-337 453-657 (733)
249 PRK08699 DNA polymerase III su 95.9 0.073 1.6E-06 58.4 12.0 123 188-311 20-184 (325)
250 COG1875 NYN ribonuclease and A 95.9 0.019 4.1E-07 60.8 7.0 40 163-209 226-265 (436)
251 PF06309 Torsin: Torsin; Inte 95.9 0.011 2.3E-07 53.3 4.5 52 161-212 25-76 (127)
252 PF00560 LRR_1: Leucine Rich R 95.9 0.0041 9E-08 37.1 1.2 21 565-585 1-21 (22)
253 COG2812 DnaX DNA polymerase II 95.9 0.023 4.9E-07 65.0 8.0 170 161-338 16-215 (515)
254 PF13306 LRR_5: Leucine rich r 95.8 0.038 8.3E-07 51.8 8.5 57 941-1001 8-66 (129)
255 PRK13695 putative NTPase; Prov 95.8 0.024 5.3E-07 56.4 7.3 22 191-212 2-23 (174)
256 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.046 1E-06 56.3 9.1 50 234-285 149-202 (254)
257 PRK06696 uridine kinase; Valid 95.8 0.012 2.7E-07 61.2 5.1 42 166-211 3-44 (223)
258 PRK04132 replication factor C 95.7 0.1 2.2E-06 63.9 13.2 143 197-342 574-730 (846)
259 KOG0731 AAA+-type ATPase conta 95.7 0.057 1.2E-06 64.0 10.6 171 161-340 311-521 (774)
260 PF05621 TniB: Bacterial TniB 95.7 0.15 3.4E-06 53.8 12.5 168 168-340 44-258 (302)
261 PF13306 LRR_5: Leucine rich r 95.7 0.051 1.1E-06 51.0 8.5 103 965-1073 8-111 (129)
262 KOG2543 Origin recognition com 95.6 0.17 3.6E-06 54.3 12.6 143 160-311 5-192 (438)
263 COG4618 ArpD ABC-type protease 95.6 0.026 5.6E-07 62.6 6.9 21 191-211 364-384 (580)
264 KOG0733 Nuclear AAA ATPase (VC 95.6 0.081 1.8E-06 59.9 10.7 150 161-312 190-374 (802)
265 cd03222 ABC_RNaseL_inhibitor T 95.5 0.075 1.6E-06 52.5 9.3 97 190-286 26-136 (177)
266 COG0470 HolB ATPase involved i 95.5 0.058 1.3E-06 60.3 9.7 136 162-302 2-171 (325)
267 PRK15455 PrkA family serine pr 95.5 0.01 2.3E-07 67.7 3.6 49 162-211 77-125 (644)
268 cd03216 ABC_Carb_Monos_I This 95.5 0.067 1.5E-06 52.4 8.8 93 190-285 27-145 (163)
269 cd03228 ABCC_MRP_Like The MRP 95.4 0.087 1.9E-06 52.2 9.6 97 190-287 29-160 (171)
270 KOG1051 Chaperone HSP104 and r 95.4 0.11 2.4E-06 63.2 11.9 107 161-269 562-687 (898)
271 COG3267 ExeA Type II secretory 95.4 0.33 7.2E-06 49.4 13.3 153 189-345 51-247 (269)
272 PRK15429 formate hydrogenlyase 95.4 0.059 1.3E-06 66.5 10.1 114 161-281 376-520 (686)
273 cd01120 RecA-like_NTPases RecA 95.4 0.029 6.2E-07 55.3 6.0 21 191-211 1-21 (165)
274 cd01131 PilT Pilus retraction 95.4 0.1 2.2E-06 53.0 10.1 88 191-285 3-112 (198)
275 TIGR00382 clpX endopeptidase C 95.4 0.091 2E-06 59.1 10.4 52 160-211 76-138 (413)
276 KOG2739 Leucine-rich acidic nu 95.3 0.0059 1.3E-07 61.8 0.9 63 943-1006 63-129 (260)
277 KOG0730 AAA+-type ATPase [Post 95.3 0.11 2.4E-06 59.8 10.6 151 161-313 434-616 (693)
278 COG1618 Predicted nucleotide k 95.2 0.017 3.6E-07 53.9 3.1 23 190-212 6-28 (179)
279 PRK05022 anaerobic nitric oxid 95.2 0.1 2.2E-06 61.7 10.6 114 160-281 186-331 (509)
280 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.1 2.2E-06 50.0 8.2 48 236-283 88-139 (159)
281 PRK13407 bchI magnesium chelat 95.0 0.069 1.5E-06 58.5 7.7 44 161-211 8-51 (334)
282 cd01135 V_A-ATPase_B V/A-type 94.9 0.052 1.1E-06 56.8 6.4 42 191-232 71-114 (276)
283 PRK10820 DNA-binding transcrip 94.9 0.1 2.2E-06 61.7 9.8 114 161-282 204-349 (520)
284 KOG2170 ATPase of the AAA+ sup 94.9 0.03 6.5E-07 57.8 4.4 108 160-267 81-203 (344)
285 PF00448 SRP54: SRP54-type pro 94.9 0.059 1.3E-06 54.3 6.6 37 189-227 1-37 (196)
286 KOG0473 Leucine-rich repeat pr 94.9 0.0011 2.3E-08 65.0 -5.6 85 537-622 38-122 (326)
287 cd03247 ABCC_cytochrome_bd The 94.9 0.14 3.1E-06 51.1 9.4 97 190-286 29-161 (178)
288 PF07724 AAA_2: AAA domain (Cd 94.9 0.086 1.9E-06 51.8 7.5 78 189-268 3-105 (171)
289 PRK11889 flhF flagellar biosyn 94.9 0.2 4.4E-06 55.1 10.7 24 188-211 240-263 (436)
290 cd03238 ABC_UvrA The excision 94.8 0.12 2.7E-06 51.0 8.3 97 190-286 22-153 (176)
291 PF00560 LRR_1: Leucine Rich R 94.8 0.014 3.1E-07 34.8 1.1 22 542-563 1-22 (22)
292 PRK12608 transcription termina 94.8 0.042 9.2E-07 60.0 5.4 37 169-211 119-155 (380)
293 cd03214 ABC_Iron-Siderophores_ 94.8 0.1 2.3E-06 52.2 8.0 93 190-285 26-161 (180)
294 COG0563 Adk Adenylate kinase a 94.8 0.029 6.2E-07 55.4 3.8 58 191-251 2-63 (178)
295 cd03283 ABC_MutS-like MutS-lik 94.7 0.17 3.6E-06 51.4 9.3 97 190-288 26-154 (199)
296 KOG2035 Replication factor C, 94.7 0.36 7.8E-06 49.4 11.3 170 163-341 15-226 (351)
297 PF13238 AAA_18: AAA domain; P 94.7 0.021 4.5E-07 53.6 2.7 21 192-212 1-21 (129)
298 cd03230 ABC_DR_subfamily_A Thi 94.7 0.15 3.3E-06 50.6 9.0 98 190-287 27-160 (173)
299 cd03229 ABC_Class3 This class 94.7 0.19 4.2E-06 50.1 9.7 97 190-286 27-165 (178)
300 PRK07667 uridine kinase; Provi 94.7 0.038 8.2E-07 55.9 4.7 37 170-211 3-39 (193)
301 PF07726 AAA_3: ATPase family 94.7 0.022 4.8E-07 51.5 2.5 27 192-220 2-28 (131)
302 PRK13236 nitrogenase reductase 94.7 0.039 8.6E-07 60.1 5.0 25 187-211 4-28 (296)
303 PTZ00301 uridine kinase; Provi 94.7 0.028 6E-07 57.2 3.5 23 189-211 3-25 (210)
304 PRK06547 hypothetical protein; 94.6 0.039 8.5E-07 54.3 4.4 25 188-212 14-38 (172)
305 cd02019 NK Nucleoside/nucleoti 94.6 0.023 5E-07 46.1 2.2 22 191-212 1-22 (69)
306 PLN00020 ribulose bisphosphate 94.6 0.041 9E-07 59.3 4.7 61 187-252 146-222 (413)
307 COG0194 Gmk Guanylate kinase [ 94.6 0.057 1.2E-06 52.1 5.1 109 190-312 5-136 (191)
308 cd01124 KaiC KaiC is a circadi 94.6 0.088 1.9E-06 53.2 7.0 35 192-228 2-36 (187)
309 COG0464 SpoVK ATPases of the A 94.5 0.26 5.6E-06 58.5 11.9 124 188-313 275-424 (494)
310 KOG0743 AAA+-type ATPase [Post 94.5 0.36 7.7E-06 53.4 11.6 146 190-346 236-412 (457)
311 PF00006 ATP-synt_ab: ATP synt 94.5 0.11 2.4E-06 53.0 7.4 38 191-232 17-54 (215)
312 cd02117 NifH_like This family 94.5 0.038 8.3E-07 57.1 4.2 22 190-211 1-22 (212)
313 PF00485 PRK: Phosphoribulokin 94.5 0.027 5.8E-07 57.2 2.9 21 191-211 1-21 (194)
314 cd03246 ABCC_Protease_Secretio 94.4 0.14 3.1E-06 50.8 8.0 96 190-286 29-160 (173)
315 KOG0728 26S proteasome regulat 94.3 0.41 9E-06 47.8 10.5 144 162-312 147-331 (404)
316 PRK04296 thymidine kinase; Pro 94.3 0.17 3.8E-06 50.9 8.5 90 190-283 3-117 (190)
317 COG1126 GlnQ ABC-type polar am 94.3 0.2 4.4E-06 49.5 8.3 55 234-288 146-202 (240)
318 cd03263 ABC_subfamily_A The AB 94.3 0.19 4.2E-06 52.2 9.1 23 190-212 29-51 (220)
319 KOG2123 Uncharacterized conser 94.3 0.0021 4.5E-08 64.9 -5.3 100 968-1071 18-123 (388)
320 PRK05480 uridine/cytidine kina 94.3 0.034 7.3E-07 57.4 3.3 24 188-211 5-28 (209)
321 PRK13232 nifH nitrogenase redu 94.3 0.044 9.4E-07 59.2 4.2 22 190-211 2-23 (273)
322 PRK08233 hypothetical protein; 94.3 0.033 7.2E-07 56.0 3.1 24 189-212 3-26 (182)
323 COG1136 SalX ABC-type antimicr 94.3 0.19 4.1E-06 51.1 8.3 55 234-288 152-209 (226)
324 KOG0744 AAA+-type ATPase [Post 94.3 0.09 2E-06 54.8 6.1 63 189-251 177-259 (423)
325 PRK10923 glnG nitrogen regulat 94.2 0.24 5.2E-06 58.5 10.8 113 161-281 138-282 (469)
326 TIGR03522 GldA_ABC_ATP gliding 94.2 0.23 5.1E-06 54.3 9.8 23 190-212 29-51 (301)
327 PRK08972 fliI flagellum-specif 94.2 0.11 2.4E-06 58.3 7.0 23 190-212 163-185 (444)
328 TIGR00235 udk uridine kinase. 94.2 0.039 8.5E-07 56.7 3.4 24 188-211 5-28 (207)
329 COG1428 Deoxynucleoside kinase 94.1 0.033 7.2E-07 54.8 2.5 24 190-213 5-28 (216)
330 PRK13539 cytochrome c biogenes 94.1 0.19 4.1E-06 51.7 8.3 23 190-212 29-51 (207)
331 PRK05541 adenylylsulfate kinas 94.1 0.041 8.9E-07 54.9 3.3 36 188-225 6-41 (176)
332 PF08298 AAA_PrkA: PrkA AAA do 94.1 0.069 1.5E-06 57.5 5.0 52 159-211 59-110 (358)
333 KOG2228 Origin recognition com 94.0 0.35 7.7E-06 51.0 9.9 146 161-312 24-219 (408)
334 KOG2123 Uncharacterized conser 94.0 0.0036 7.9E-08 63.2 -4.2 99 896-999 18-123 (388)
335 PRK13235 nifH nitrogenase redu 94.0 0.054 1.2E-06 58.6 4.3 22 190-211 2-23 (274)
336 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.33 7.2E-06 49.9 9.9 99 189-288 29-160 (213)
337 PF12061 DUF3542: Protein of u 94.0 0.13 2.7E-06 53.2 6.5 76 8-83 296-372 (402)
338 KOG0735 AAA+-type ATPase [Post 94.0 0.082 1.8E-06 61.0 5.7 62 189-251 431-503 (952)
339 PRK06762 hypothetical protein; 93.9 0.04 8.7E-07 54.4 2.9 22 190-211 3-24 (166)
340 KOG1532 GTPase XAB1, interacts 93.9 0.042 9.2E-07 55.6 2.9 27 186-212 16-42 (366)
341 cd03223 ABCD_peroxisomal_ALDP 93.9 0.36 7.8E-06 47.5 9.6 95 190-286 28-152 (166)
342 PRK11388 DNA-binding transcrip 93.9 0.23 5E-06 61.0 10.0 113 161-281 325-466 (638)
343 PF08433 KTI12: Chromatin asso 93.9 0.073 1.6E-06 56.5 4.9 23 190-212 2-24 (270)
344 PRK12597 F0F1 ATP synthase sub 93.9 0.081 1.8E-06 60.2 5.4 38 191-229 145-182 (461)
345 PRK10733 hflB ATP-dependent me 93.9 0.43 9.3E-06 58.0 12.0 147 161-312 152-335 (644)
346 TIGR00150 HI0065_YjeE ATPase, 93.9 0.084 1.8E-06 48.8 4.6 40 168-212 6-45 (133)
347 PRK03839 putative kinase; Prov 93.9 0.04 8.6E-07 55.3 2.7 22 191-212 2-23 (180)
348 cd00983 recA RecA is a bacter 93.8 0.087 1.9E-06 57.0 5.4 44 188-233 54-97 (325)
349 cd03259 ABC_Carb_Solutes_like 93.8 0.33 7.1E-06 50.2 9.7 22 190-211 27-48 (213)
350 cd01129 PulE-GspE PulE/GspE Th 93.8 0.34 7.3E-06 51.6 9.8 69 190-260 81-165 (264)
351 PHA02774 E1; Provisional 93.8 0.19 4.1E-06 57.9 8.2 55 189-251 434-488 (613)
352 cd01123 Rad51_DMC1_radA Rad51_ 93.8 0.11 2.4E-06 54.8 6.2 44 189-232 19-66 (235)
353 TIGR03864 PQQ_ABC_ATP ABC tran 93.8 0.23 5E-06 52.3 8.5 23 190-212 28-50 (236)
354 COG0572 Udk Uridine kinase [Nu 93.8 0.052 1.1E-06 54.4 3.2 24 188-211 7-30 (218)
355 cd03269 ABC_putative_ATPase Th 93.8 0.34 7.4E-06 49.9 9.6 23 190-212 27-49 (210)
356 KOG0727 26S proteasome regulat 93.8 0.26 5.7E-06 49.2 7.9 52 161-212 155-212 (408)
357 cd03265 ABC_DrrA DrrA is the A 93.7 0.24 5.2E-06 51.5 8.5 23 190-212 27-49 (220)
358 PRK04040 adenylate kinase; Pro 93.7 0.048 1E-06 54.7 3.0 22 190-211 3-24 (188)
359 cd03264 ABC_drug_resistance_li 93.7 0.3 6.6E-06 50.4 9.1 21 191-211 27-47 (211)
360 PRK00625 shikimate kinase; Pro 93.7 0.042 9.2E-07 54.1 2.5 22 191-212 2-23 (173)
361 TIGR03740 galliderm_ABC gallid 93.7 0.28 6E-06 51.2 8.8 23 190-212 27-49 (223)
362 PRK09270 nucleoside triphospha 93.7 0.081 1.8E-06 55.3 4.7 24 188-211 32-55 (229)
363 PRK09361 radB DNA repair and r 93.6 0.11 2.4E-06 54.3 5.7 38 189-228 23-60 (225)
364 PRK15424 propionate catabolism 93.6 0.33 7.2E-06 56.9 10.0 113 161-281 219-372 (538)
365 PRK11248 tauB taurine transpor 93.6 0.38 8.2E-06 51.3 9.8 23 190-212 28-50 (255)
366 COG2274 SunT ABC-type bacterio 93.6 4.5 9.7E-05 49.5 19.7 53 234-286 619-673 (709)
367 PRK15115 response regulator Gl 93.6 0.49 1.1E-05 55.5 11.6 114 162-282 135-279 (444)
368 PRK06067 flagellar accessory p 93.5 0.21 4.5E-06 52.5 7.6 42 188-231 24-65 (234)
369 COG4133 CcmA ABC-type transpor 93.5 0.28 6E-06 47.4 7.4 21 191-211 30-50 (209)
370 PRK09280 F0F1 ATP synthase sub 93.5 0.12 2.5E-06 58.7 5.8 21 191-211 146-166 (463)
371 PRK08927 fliI flagellum-specif 93.5 0.16 3.4E-06 57.4 6.8 23 190-212 159-181 (442)
372 cd03226 ABC_cobalt_CbiO_domain 93.5 0.39 8.5E-06 49.3 9.4 23 190-212 27-49 (205)
373 PTZ00185 ATPase alpha subunit; 93.5 0.16 3.5E-06 57.4 6.8 61 191-251 191-298 (574)
374 PRK05703 flhF flagellar biosyn 93.4 0.51 1.1E-05 54.0 11.0 23 189-211 221-243 (424)
375 cd00267 ABC_ATPase ABC (ATP-bi 93.4 0.32 7E-06 47.4 8.3 95 190-287 26-145 (157)
376 PF01078 Mg_chelatase: Magnesi 93.4 0.11 2.4E-06 51.7 5.0 97 161-268 3-132 (206)
377 PRK12724 flagellar biosynthesi 93.4 0.29 6.4E-06 54.6 8.7 23 189-211 223-245 (432)
378 PRK06936 type III secretion sy 93.4 0.17 3.7E-06 57.0 6.9 23 190-212 163-185 (439)
379 TIGR01360 aden_kin_iso1 adenyl 93.4 0.057 1.2E-06 54.7 2.9 23 189-211 3-25 (188)
380 COG0396 sufC Cysteine desulfur 93.4 0.37 8.1E-06 48.2 8.3 23 191-213 32-54 (251)
381 cd03267 ABC_NatA_like Similar 93.4 0.33 7.2E-06 51.0 8.8 23 190-212 48-70 (236)
382 cd03215 ABC_Carb_Monos_II This 93.4 0.39 8.4E-06 48.2 8.9 23 190-212 27-49 (182)
383 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.11 2.4E-06 58.7 5.3 39 191-230 140-178 (449)
384 cd03217 ABC_FeS_Assembly ABC-t 93.3 0.37 8E-06 49.2 8.8 96 190-286 27-168 (200)
385 COG2019 AdkA Archaeal adenylat 93.3 0.065 1.4E-06 50.3 2.8 23 189-211 4-26 (189)
386 TIGR02012 tigrfam_recA protein 93.3 0.13 2.8E-06 55.7 5.6 44 188-233 54-97 (321)
387 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.3 0.43 9.4E-06 49.7 9.4 23 190-212 49-71 (224)
388 KOG1514 Origin recognition com 93.3 0.61 1.3E-05 54.3 11.0 176 161-345 396-623 (767)
389 cd01134 V_A-ATPase_A V/A-type 93.3 0.32 6.9E-06 52.6 8.3 38 191-232 159-196 (369)
390 cd03253 ABCC_ATM1_transporter 93.3 0.41 8.8E-06 50.5 9.3 23 190-212 28-50 (236)
391 cd02040 NifH NifH gene encodes 93.3 0.085 1.9E-06 57.0 4.3 22 190-211 2-23 (270)
392 cd03244 ABCC_MRP_domain2 Domai 93.2 0.38 8.3E-06 50.0 9.0 22 190-211 31-52 (221)
393 COG1116 TauB ABC-type nitrate/ 93.2 0.19 4.1E-06 51.2 6.2 21 191-211 31-51 (248)
394 TIGR02329 propionate_PrpR prop 93.2 0.34 7.4E-06 56.9 9.3 113 161-281 212-357 (526)
395 PF01583 APS_kinase: Adenylyls 93.2 0.072 1.6E-06 50.8 3.1 22 190-211 3-24 (156)
396 cd03237 ABC_RNaseL_inhibitor_d 93.2 0.37 8E-06 50.9 8.8 23 190-212 26-48 (246)
397 COG1066 Sms Predicted ATP-depe 93.2 0.15 3.2E-06 55.5 5.7 41 190-233 94-134 (456)
398 PF03193 DUF258: Protein of un 93.2 0.12 2.6E-06 49.6 4.5 35 169-213 25-59 (161)
399 PRK00279 adk adenylate kinase; 93.2 0.24 5.3E-06 51.2 7.3 21 191-211 2-22 (215)
400 cd03268 ABC_BcrA_bacitracin_re 93.2 0.42 9.1E-06 49.2 9.1 22 190-211 27-48 (208)
401 PRK09544 znuC high-affinity zi 93.2 0.39 8.4E-06 51.0 9.0 23 190-212 31-53 (251)
402 COG4555 NatA ABC-type Na+ tran 93.2 0.6 1.3E-05 45.6 9.1 23 189-211 28-50 (245)
403 PF03308 ArgK: ArgK protein; 93.2 0.15 3.4E-06 52.2 5.5 39 169-212 14-52 (266)
404 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.1 0.46 1E-05 50.1 9.5 23 190-212 30-52 (238)
405 TIGR02858 spore_III_AA stage I 93.1 1.1 2.3E-05 47.8 12.0 95 188-287 110-234 (270)
406 COG0465 HflB ATP-dependent Zn 93.1 0.7 1.5E-05 54.0 11.4 92 160-251 149-251 (596)
407 TIGR01818 ntrC nitrogen regula 93.1 0.9 1.9E-05 53.6 13.0 114 162-282 135-279 (463)
408 cd03251 ABCC_MsbA MsbA is an e 93.1 0.46 9.9E-06 50.0 9.4 22 190-211 29-50 (234)
409 TIGR01281 DPOR_bchL light-inde 93.1 0.096 2.1E-06 56.5 4.4 21 191-211 2-22 (268)
410 TIGR03574 selen_PSTK L-seryl-t 93.1 0.3 6.4E-06 51.9 8.0 20 192-211 2-21 (249)
411 cd03284 ABC_MutS1 MutS1 homolo 93.1 0.29 6.3E-06 50.4 7.7 98 190-288 31-159 (216)
412 KOG0733 Nuclear AAA ATPase (VC 93.1 0.47 1E-05 54.1 9.4 123 189-313 545-693 (802)
413 COG0467 RAD55 RecA-superfamily 93.0 0.15 3.3E-06 54.6 5.7 49 188-238 22-70 (260)
414 cd03252 ABCC_Hemolysin The ABC 93.0 0.42 9.1E-06 50.4 9.0 22 190-211 29-50 (237)
415 PRK14721 flhF flagellar biosyn 93.0 0.65 1.4E-05 52.4 10.7 23 189-211 191-213 (420)
416 PF13504 LRR_7: Leucine rich r 93.0 0.061 1.3E-06 29.6 1.3 15 565-579 2-16 (17)
417 TIGR00554 panK_bact pantothena 93.0 0.13 2.8E-06 55.1 4.9 24 188-211 61-84 (290)
418 TIGR02322 phosphon_PhnN phosph 93.0 0.068 1.5E-06 53.5 2.8 22 191-212 3-24 (179)
419 cd04162 Arl9_Arfrp2_like Arl9/ 93.0 0.34 7.4E-06 47.6 7.7 21 192-212 2-22 (164)
420 PRK12723 flagellar biosynthesi 93.0 0.69 1.5E-05 51.9 10.8 24 188-211 173-196 (388)
421 KOG0924 mRNA splicing factor A 93.0 0.48 1.1E-05 54.4 9.4 34 170-212 361-395 (1042)
422 cd03300 ABC_PotA_N PotA is an 93.0 0.34 7.3E-06 50.9 8.1 23 190-212 27-49 (232)
423 TIGR01188 drrA daunorubicin re 92.9 0.63 1.4E-05 51.0 10.5 22 190-211 20-41 (302)
424 PF08477 Miro: Miro-like prote 92.9 0.074 1.6E-06 49.0 2.8 22 192-213 2-23 (119)
425 smart00534 MUTSac ATPase domai 92.9 0.68 1.5E-05 46.5 9.9 97 191-289 1-129 (185)
426 PRK13185 chlL protochlorophyll 92.9 0.12 2.5E-06 55.9 4.6 22 190-211 3-24 (270)
427 PF07693 KAP_NTPase: KAP famil 92.9 1.2 2.6E-05 49.6 13.0 41 168-212 3-43 (325)
428 cd03266 ABC_NatA_sodium_export 92.9 0.46 9.9E-06 49.3 8.9 23 190-212 32-54 (218)
429 COG4088 Predicted nucleotide k 92.9 0.096 2.1E-06 50.9 3.3 21 191-211 3-23 (261)
430 PRK08149 ATP synthase SpaL; Va 92.9 0.2 4.3E-06 56.5 6.4 23 190-212 152-174 (428)
431 KOG0736 Peroxisome assembly fa 92.8 0.27 6E-06 57.5 7.5 86 161-253 672-775 (953)
432 cd02025 PanK Pantothenate kina 92.8 0.059 1.3E-06 55.7 2.1 21 191-211 1-21 (220)
433 PRK15177 Vi polysaccharide exp 92.8 0.43 9.4E-06 49.2 8.5 23 190-212 14-36 (213)
434 cd03301 ABC_MalK_N The N-termi 92.8 0.36 7.8E-06 49.9 8.0 23 190-212 27-49 (213)
435 TIGR01359 UMP_CMP_kin_fam UMP- 92.8 0.061 1.3E-06 54.1 2.2 21 191-211 1-21 (183)
436 cd02023 UMPK Uridine monophosp 92.8 0.062 1.3E-06 54.9 2.2 21 191-211 1-21 (198)
437 cd01121 Sms Sms (bacterial rad 92.8 0.19 4.1E-06 56.1 6.2 42 189-232 82-123 (372)
438 cd02024 NRK1 Nicotinamide ribo 92.8 0.063 1.4E-06 53.4 2.2 21 191-211 1-21 (187)
439 TIGR01277 thiQ thiamine ABC tr 92.8 0.38 8.2E-06 49.7 8.1 23 190-212 25-47 (213)
440 cd03231 ABC_CcmA_heme_exporter 92.8 0.4 8.6E-06 49.0 8.1 23 190-212 27-49 (201)
441 KOG0729 26S proteasome regulat 92.7 0.084 1.8E-06 53.0 2.9 88 162-251 178-279 (435)
442 TIGR02016 BchX chlorophyllide 92.7 0.11 2.4E-06 56.5 4.1 22 190-211 1-22 (296)
443 PRK00131 aroK shikimate kinase 92.7 0.075 1.6E-06 53.0 2.6 24 189-212 4-27 (175)
444 PRK10751 molybdopterin-guanine 92.7 0.11 2.4E-06 50.6 3.7 25 188-212 5-29 (173)
445 PRK05342 clpX ATP-dependent pr 92.7 0.19 4E-06 57.0 5.9 51 161-211 71-130 (412)
446 COG1936 Predicted nucleotide k 92.6 0.083 1.8E-06 50.2 2.6 20 191-210 2-21 (180)
447 TIGR01663 PNK-3'Pase polynucle 92.6 0.48 1E-05 55.2 9.3 67 187-263 367-442 (526)
448 TIGR00390 hslU ATP-dependent p 92.6 0.16 3.4E-06 56.4 5.1 52 161-212 12-70 (441)
449 TIGR01420 pilT_fam pilus retra 92.6 0.56 1.2E-05 52.3 9.6 88 190-284 123-232 (343)
450 PRK00889 adenylylsulfate kinas 92.6 0.092 2E-06 52.3 3.1 24 189-212 4-27 (175)
451 cd03254 ABCC_Glucan_exporter_l 92.6 0.54 1.2E-05 49.3 9.1 23 190-212 30-52 (229)
452 PF11868 DUF3388: Protein of u 92.6 0.84 1.8E-05 42.4 8.7 87 168-266 36-132 (192)
453 cd03369 ABCC_NFT1 Domain 2 of 92.5 0.55 1.2E-05 48.3 8.9 22 190-211 35-56 (207)
454 cd04124 RabL2 RabL2 subfamily. 92.5 0.33 7.2E-06 47.5 7.0 21 192-212 3-23 (161)
455 TIGR03496 FliI_clade1 flagella 92.5 0.28 6.2E-06 55.3 7.1 23 190-212 138-160 (411)
456 cd02021 GntK Gluconate kinase 92.5 0.076 1.7E-06 51.3 2.3 22 191-212 1-22 (150)
457 TIGR00708 cobA cob(I)alamin ad 92.5 0.54 1.2E-05 45.7 8.0 47 236-282 90-140 (173)
458 PRK13949 shikimate kinase; Pro 92.5 0.08 1.7E-06 52.1 2.5 22 191-212 3-24 (169)
459 TIGR02868 CydC thiol reductant 92.5 0.45 9.7E-06 57.2 9.4 22 190-211 362-383 (529)
460 PRK06217 hypothetical protein; 92.5 0.079 1.7E-06 53.2 2.5 23 191-213 3-25 (183)
461 PF12775 AAA_7: P-loop contain 92.5 0.3 6.6E-06 52.2 7.0 72 170-251 22-109 (272)
462 PRK05201 hslU ATP-dependent pr 92.5 0.19 4.1E-06 55.9 5.5 53 160-212 14-73 (443)
463 TIGR03263 guanyl_kin guanylate 92.5 0.089 1.9E-06 52.8 2.8 22 190-211 2-23 (180)
464 cd01394 radB RadB. The archaea 92.5 0.18 3.8E-06 52.4 5.2 50 188-239 18-67 (218)
465 TIGR00968 3a0106s01 sulfate AB 92.4 0.43 9.3E-06 50.3 8.1 23 190-212 27-49 (237)
466 PRK07594 type III secretion sy 92.4 0.24 5.2E-06 55.9 6.3 23 190-212 156-178 (433)
467 PF08423 Rad51: Rad51; InterP 92.4 0.22 4.8E-06 52.7 5.8 44 190-233 39-86 (256)
468 PF00625 Guanylate_kin: Guanyl 92.4 0.12 2.6E-06 51.9 3.6 37 190-228 3-39 (183)
469 COG5192 BMS1 GTP-binding prote 92.4 0.51 1.1E-05 52.7 8.4 85 188-272 68-165 (1077)
470 cd01136 ATPase_flagellum-secre 92.4 0.27 5.9E-06 53.4 6.5 23 190-212 70-92 (326)
471 PRK09354 recA recombinase A; P 92.3 0.21 4.5E-06 54.6 5.6 44 188-233 59-102 (349)
472 TIGR02237 recomb_radB DNA repa 92.3 0.42 9E-06 49.3 7.7 40 188-229 11-50 (209)
473 PRK13947 shikimate kinase; Pro 92.3 0.087 1.9E-06 52.3 2.5 22 191-212 3-24 (171)
474 PRK10463 hydrogenase nickel in 92.3 0.25 5.4E-06 52.4 5.9 24 188-211 103-126 (290)
475 PRK10867 signal recognition pa 92.3 0.47 1E-05 53.9 8.6 24 188-211 99-122 (433)
476 cd00227 CPT Chloramphenicol (C 92.3 0.09 2E-06 52.3 2.6 23 190-212 3-25 (175)
477 KOG0058 Peptide exporter, ABC 92.3 0.24 5.2E-06 58.0 6.2 53 234-286 614-668 (716)
478 PRK07132 DNA polymerase III su 92.3 3.1 6.7E-05 45.0 14.3 147 189-343 18-185 (299)
479 PRK06002 fliI flagellum-specif 92.3 0.23 5.1E-06 56.1 6.0 23 190-212 166-188 (450)
480 PRK05439 pantothenate kinase; 92.3 0.19 4.2E-06 54.1 5.1 24 188-211 85-108 (311)
481 PRK03846 adenylylsulfate kinas 92.3 0.11 2.4E-06 52.9 3.2 24 188-211 23-46 (198)
482 PRK05986 cob(I)alamin adenolsy 92.3 0.6 1.3E-05 46.1 8.1 93 190-282 23-158 (191)
483 cd01878 HflX HflX subfamily. 92.3 0.55 1.2E-05 48.2 8.5 24 189-212 41-64 (204)
484 cd03285 ABC_MSH2_euk MutS2 hom 92.3 0.17 3.7E-06 52.4 4.6 151 189-348 30-218 (222)
485 PF03205 MobB: Molybdopterin g 92.2 0.11 2.4E-06 49.1 2.9 23 190-212 1-23 (140)
486 COG1102 Cmk Cytidylate kinase 92.2 0.091 2E-06 49.1 2.2 22 191-212 2-23 (179)
487 cd03243 ABC_MutS_homologs The 92.2 0.66 1.4E-05 47.4 8.9 97 190-289 30-158 (202)
488 cd03250 ABCC_MRP_domain1 Domai 92.2 1.2 2.5E-05 45.7 10.8 23 190-212 32-54 (204)
489 cd03289 ABCC_CFTR2 The CFTR su 92.2 0.73 1.6E-05 49.5 9.5 23 190-212 31-53 (275)
490 cd00071 GMPK Guanosine monopho 92.2 0.11 2.3E-06 49.2 2.8 21 192-212 2-22 (137)
491 PRK13234 nifH nitrogenase redu 92.2 0.17 3.6E-06 55.2 4.6 24 188-211 3-26 (295)
492 KOG0927 Predicted transporter 92.2 0.43 9.3E-06 53.8 7.7 56 234-290 231-287 (614)
493 PRK12678 transcription termina 92.2 0.28 6E-06 56.3 6.3 34 172-211 405-438 (672)
494 cd02028 UMPK_like Uridine mono 92.2 0.094 2E-06 52.2 2.5 21 191-211 1-21 (179)
495 TIGR01041 ATP_syn_B_arch ATP s 92.1 0.27 5.8E-06 56.1 6.3 39 191-229 143-183 (458)
496 PRK14722 flhF flagellar biosyn 92.1 0.49 1.1E-05 52.5 8.2 23 190-212 138-160 (374)
497 TIGR02915 PEP_resp_reg putativ 92.1 0.7 1.5E-05 54.1 10.2 113 162-282 140-284 (445)
498 PRK13650 cbiO cobalt transport 92.1 0.4 8.7E-06 51.9 7.5 22 190-211 34-55 (279)
499 TIGR01425 SRP54_euk signal rec 92.1 0.46 1E-05 53.6 8.0 24 188-211 99-122 (429)
500 PRK13537 nodulation ABC transp 92.1 0.61 1.3E-05 51.1 8.9 23 190-212 34-56 (306)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-86 Score=791.98 Aligned_cols=782 Identities=29% Similarity=0.464 Sum_probs=575.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhhhhhHHHhhhhH
Q 001145 8 PLLQVIFDKVASGLLKSIALKFGYEEEIDKLRHTINLIRAVVEDAEERQVREKALKIWLADLKEVAYDVDNLLDEFCLDA 87 (1141)
Q Consensus 8 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~ 87 (1141)
+.++..++++.+.+.+++....+.++.+..|++.|..++++++||++++.....+..|.+.+++++|++||.++.|....
T Consensus 3 ~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~ 82 (889)
T KOG4658|consen 3 ACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEE 82 (889)
T ss_pred eEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888888899999999999999999999999999999999988888899999999999999999999998887
Q ss_pred HHhhhcCccccc-cccccccCCCchhHHhhHHHHHHHHHHHHHHHHHhcc-ccccc-cc-cC--CCcccCCCCCCccccC
Q 001145 88 ITARTQGFYYHK-VLRDFLPSFKPVAVYLELFPKLREIRKRLDVLAAERS-LKEGV-VK-IG--SDVESRRQTGSFVIES 161 (1141)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~~-~~-~~--~~~~~~~~~~~~~~~~ 161 (1141)
...+..+....+ ......+ -..+++..+..+..+.+++..+.+... +.... .. .. ......+++.+.....
T Consensus 83 ~~~~~~~~l~~~~~~~~~~c---~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 83 IERKANDLLSTRSVERQRLC---LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHhHHhhhhHHHHHHHh---hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 655333221100 0111111 013455555555555555555554433 21110 10 11 1112233444544555
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cccccceEEEEEeCcchhH-------
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VTKSFELKIWVCVNEDFNS------- 233 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~------- 233 (1141)
. ||.+..++++++.|.+. +..+|+|+||||+||||||++++|+.. ++.+|+.++||+||++|+.
T Consensus 160 ~-VG~e~~~~kl~~~L~~d-------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~I 231 (889)
T KOG4658|consen 160 D-VGLETMLEKLWNRLMED-------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTI 231 (889)
T ss_pred c-ccHHHHHHHHHHHhccC-------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHH
Confidence 5 99999999999999987 237999999999999999999999988 9999999999999998865
Q ss_pred ---------------------HHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHh-hCCC
Q 001145 234 ---------------------QLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATI-VGTI 291 (1141)
Q Consensus 234 ---------------------~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~-~~~~ 291 (1141)
.+.+.|++|||++|+||||+. .+|+.+..++|...+||+|++|||+..|+.. +++.
T Consensus 232 l~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~ 309 (889)
T KOG4658|consen 232 LERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD 309 (889)
T ss_pred HHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC
Confidence 577788999999999999975 4699999999999899999999999999988 8888
Q ss_pred CceeCCCCCHHHHHHHHhhcccCCCC-CCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhhcccccc----
Q 001145 292 PPYYLKGLSHDDCWTLFKQRAFAPGE-EYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQESDLWN---- 366 (1141)
Q Consensus 292 ~~~~l~~l~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~---- 366 (1141)
..++++.|+++|||.||++.||.... ..+.+.++|++|+++|+|+|||++++|+.|+.|.+..+|+++.+...+.
T Consensus 310 ~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~ 389 (889)
T KOG4658|consen 310 YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAAD 389 (889)
T ss_pred ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCC
Confidence 89999999999999999999988744 5566899999999999999999999999999999999999998865443
Q ss_pred cccCccchhHHHHhhccCCcchhhhhhccccccCCCceechHHHHHHHHHcCCcccCcccccHHHHHHHHHHHHhhcccc
Q 001145 367 ACEGENRILPALRLSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDIANDYFNDLTWMSFF 446 (1141)
Q Consensus 367 ~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~ll 446 (1141)
.....+.++++|++||+.||+++|.||+|||+|||||.|+++.||.+||||||+.+.+....+++.|++|+.+|++++++
T Consensus 390 ~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 390 FSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 22345679999999999999999999999999999999999999999999999998665688999999999999999999
Q ss_pred ccccCCCCCCeecccchhHHHHHHHHhhc-----CceEEeeCC------CCCCCCCceeEEEEEeCCCCCcCchhhhcCC
Q 001145 447 QDVNKDSDGNVLDCKMHDLIHDLAQSVVG-----GEFVVLEHG------HIPRHLAQTRHSSVVCDSDLQTIPESLYEAK 515 (1141)
Q Consensus 447 ~~~~~~~~~~~~~~~mhdl~~d~~~~~~~-----~e~~~~~~~------~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~ 515 (1141)
+..... ++..+|+|||+|||+|.++|+ ++..+...+ .....+...|++++.++. ....+.. ..++
T Consensus 470 ~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~-~~~~~~~-~~~~ 545 (889)
T KOG4658|consen 470 IEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNK-IEHIAGS-SENP 545 (889)
T ss_pred hhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccc-hhhccCC-CCCC
Confidence 976544 677789999999999999999 565554432 112234678999998873 3333333 3556
Q ss_pred CCcEEeccccCCC--CCCCCccccCCCCcccEEEccCC-CCccccccccccccCceEecCCCcccccchhhhcCCCCcEE
Q 001145 516 KLRTLNLLFSKGD--LGEAPPKLFSSFRYLRTLNLSGS-GIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVL 592 (1141)
Q Consensus 516 ~Lr~L~l~~~~~~--~~~~~~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 592 (1141)
+|++|.+ ..+. +..+...+|..++.||||||++| .+..+|++|+.|.|||||+|+++.|+.+|.++.+|..|.+|
T Consensus 546 ~L~tLll--~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLL--QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEE--eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 8999987 3332 55566777999999999999977 57899999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCC-C---CCeEEEc
Q 001145 593 NLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLP-L---AGELNIR 668 (1141)
Q Consensus 593 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~-l---~~~l~i~ 668 (1141)
|+..+..+..+|..+..|++||+|.+.... .......++.+.+|++|..+.........+.++..+. + ...+.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 999988777888877889999999998653 2222233444555555544433222221111221111 1 1111111
Q ss_pred cccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccC---CCcCccEEEecccCCCCCCccc
Q 001145 669 KLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQ---PHQNLKRLSVEGYSGDRFPTWI 745 (1141)
Q Consensus 669 ~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~p~~~ 745 (1141)
. .......+.+..+.+|+.|.+..+...+... ...+... .++++..+.+.+......+.|.
T Consensus 703 ~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-----------~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 703 G-----CSKRTLISSLGSLGNLEELSILDCGISEIVI-----------EWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred c-----cccceeecccccccCcceEEEEcCCCchhhc-----------ccccccchhhhHHHHHHHHhhccccccccchh
Confidence 1 2223344556677788888877554321100 0000000 1234445555555555566665
Q ss_pred CCCCCCCccEEEEeccCCCCCC-CCCCCCCCcceeeecCCCCceEeCCcccCCCCCCccccccee-eccccccccccccc
Q 001145 746 GFPGLPNLTNIVLINCKRCENL-PALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQEL-SLIDFPSLEFWWSM 823 (1141)
Q Consensus 746 ~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L-~l~~l~~l~~~~~~ 823 (1141)
. ..++|+.|.+..|...+.+ |....+..++.+.+ .|+++..+ .+.+.+.+......
T Consensus 767 ~--f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~--------------------~f~~~~~l~~~~~l~~l~~i~~~ 824 (889)
T KOG4658|consen 767 L--FAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL--------------------PFNKLEGLRMLCSLGGLPQLYWL 824 (889)
T ss_pred h--ccCcccEEEEecccccccCCCHHHHhhhcccEEe--------------------cccccccceeeecCCCCceeEec
Confidence 4 4677888888877655433 33444444444222 45555555 35555555443333
Q ss_pred CccccCCcccEEeeccCccccCCCCC
Q 001145 824 NTKEEFPSLVKLFINKCERLKNMPWF 849 (1141)
Q Consensus 824 ~~~~~~p~L~~L~i~~c~~L~~lp~l 849 (1141)
+. .++.|+.+.+..||++..+|..
T Consensus 825 ~l--~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 825 PL--SFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cc--CccchhheehhcCcccccCccc
Confidence 22 5666888899999988887653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.4e-64 Score=637.92 Aligned_cols=698 Identities=22% Similarity=0.283 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHhccccccc--------cccCCCcccCCCCCCccccCccccchHHHHHHHHHHHhCCCCCCCCceE
Q 001145 119 PKLREIRKRLDVLAAERSLKEGV--------VKIGSDVESRRQTGSFVIESEVVGREEDKEAMIDLLASNGASGFGRKIL 190 (1141)
Q Consensus 119 ~~i~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~ 190 (1141)
.+++++++.+.+++...++.... ......+...-...+....+.+|||++.++++..+|... .++++
T Consensus 134 ~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~-----~~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE-----SEEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc-----cCceE
Confidence 45677777777776655421100 001111111111122234467999999999999988643 23688
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEe-----Cc---------chh------------------------
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCV-----NE---------DFN------------------------ 232 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----~~---------~~~------------------------ 232 (1141)
+|+||||||+||||||+++|+ ++..+|+..+|+.. .. ++.
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~ 286 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL 286 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH
Confidence 999999999999999999998 57788988877631 10 000
Q ss_pred HHHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhhCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 233 SQLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIVGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 233 ~~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
..+++.+++||+||||||||+ ...|+.+.......++||+||||||+..++..++..++|++..+++++||+||+++|
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHh
Confidence 135667889999999999975 567888877666667899999999999999887777899999999999999999999
Q ss_pred cCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhhcccccccccCccchhHHHHhhccCCcc-hhhh
Q 001145 313 FAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQESDLWNACEGENRILPALRLSYSHLPS-HLKC 391 (1141)
Q Consensus 313 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~ 391 (1141)
|+.....+.+.+++++|+++|+|+|||++++|+.|+.+ +..+|+.+++.... ..+.+|.++|++||++|++ ..|.
T Consensus 365 f~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~---~~~~~I~~~L~~SYd~L~~~~~k~ 440 (1153)
T PLN03210 365 FKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN---GLDGKIEKTLRVSYDGLNNKKDKA 440 (1153)
T ss_pred cCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh---CccHHHHHHHHHhhhccCccchhh
Confidence 98765556678899999999999999999999999875 57899998876432 1234699999999999987 5999
Q ss_pred hhccccccCCCceechHHHHHHHHHcCCcccCcccccHHHHHHHHHHHHhhccccccccCCCCCCeecccchhHHHHHHH
Q 001145 392 CFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDIANDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDLAQ 471 (1141)
Q Consensus 392 cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~ 471 (1141)
||+++|.|+.++.+ +.+..|++.+.... +..++.|++++|++... + .+.|||++|+||+
T Consensus 441 ~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r 499 (1153)
T PLN03210 441 IFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE----D---IVEMHSLLQEMGK 499 (1153)
T ss_pred hhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC----C---eEEhhhHHHHHHH
Confidence 99999999988654 34778888775432 12378899999997532 2 3689999999999
Q ss_pred HhhcCceE-------EeeCCC------CCCCCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccC
Q 001145 472 SVVGGEFV-------VLEHGH------IPRHLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFS 538 (1141)
Q Consensus 472 ~~~~~e~~-------~~~~~~------~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~ 538 (1141)
.+++++.. ...... .......++++++.... ..-..+...+|.
T Consensus 500 ~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~------------------------~~~~~i~~~aF~ 555 (1153)
T PLN03210 500 EIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE------------------------IDELHIHENAFK 555 (1153)
T ss_pred HHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc------------------------cceeeecHHHHh
Confidence 99877631 111000 00111223333332111 000111233345
Q ss_pred CCCcccEEEccCCCC-------ccccccccccc-cCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCC
Q 001145 539 SFRYLRTLNLSGSGI-------KKLHSSISCLI-SLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASI 610 (1141)
Q Consensus 539 ~l~~Lr~L~L~~~~l-------~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 610 (1141)
++++|+.|.+.++.. ..+|..+..++ +|++|++.++.++.+|..+ ...+|+.|++.+|. +..+|..+..+
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l 633 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSL 633 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccC
Confidence 555555555443221 12344444332 3555555555555555444 34455555555543 44445445555
Q ss_pred CCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCC
Q 001145 611 FQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKL 690 (1141)
Q Consensus 611 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L 690 (1141)
++|+.|+++++..+..+|. ++.+++|++|
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L-------------------------------------------------- 662 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETL-------------------------------------------------- 662 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEE--------------------------------------------------
Confidence 5555555544432222221 1111111111
Q ss_pred ceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccC-CCCCCcccCCCCCCCccEEEEeccCCCCCCCC
Q 001145 691 HSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYS-GDRFPTWIGFPGLPNLTNIVLINCKRCENLPA 769 (1141)
Q Consensus 691 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 769 (1141)
++.++. ...+|..+. .+++|+.|++++|.....+|.
T Consensus 663 -----------------------------------------~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 663 -----------------------------------------KLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred -----------------------------------------EecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCC
Confidence 111110 112222222 345556666666655455555
Q ss_pred CCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCC-
Q 001145 770 LGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPW- 848 (1141)
Q Consensus 770 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~- 848 (1141)
...+++|+.|.+++|..++ .+|.
T Consensus 700 ~i~l~sL~~L~Lsgc~~L~--------------------------------------------------------~~p~~ 723 (1153)
T PLN03210 700 GINLKSLYRLNLSGCSRLK--------------------------------------------------------SFPDI 723 (1153)
T ss_pred cCCCCCCCEEeCCCCCCcc--------------------------------------------------------ccccc
Confidence 3355666666665554332 2222
Q ss_pred CCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCcc-------ccccccCCCC
Q 001145 849 FPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLR-------SISSKLGCLV 921 (1141)
Q Consensus 849 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-------~~~~~~~~~~ 921 (1141)
.++|+.|+++++.....+. ...+++|++|.+.++.... ..+.....++
T Consensus 724 ~~nL~~L~L~~n~i~~lP~-------------------------~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPS-------------------------NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred cCCcCeeecCCCccccccc-------------------------cccccccccccccccchhhccccccccchhhhhccc
Confidence 1233334433332110000 0023344444443322110 0011122345
Q ss_pred ccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeec
Q 001145 922 ALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIM 1001 (1141)
Q Consensus 922 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 1001 (1141)
+|+.|++++|.....+|..++++++|+.|+|++|..++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 67777777777666777777777777777777777666666644 5677777777777666655532 3466666666
Q ss_pred CCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcc
Q 001145 1002 YCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKD 1056 (1141)
Q Consensus 1002 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1056 (1141)
+|.+. .+|..+..+++|+.|++++|+.+..+|..+..+++|+.+++++|..+..
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 66554 4455566666666666666666666666666666666666666655543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-42 Score=439.80 Aligned_cols=505 Identities=20% Similarity=0.243 Sum_probs=336.2
Q ss_pred CceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCC-CCCccccCCCCcccEEEccCCCCcc-ccccccccccCce
Q 001145 491 AQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLG-EAPPKLFSSFRYLRTLNLSGSGIKK-LHSSISCLISLRY 568 (1141)
Q Consensus 491 ~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~ 568 (1141)
..++.+.+..+......+..+..+++|++|++ +.+.+. .++...|..+++|++|+|++|.++. +|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L--s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINL--SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEEC--CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 35777777766444456778889999999998 556655 3455557799999999999998864 443 57899999
Q ss_pred EecCCCccc-ccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEecc
Q 001145 569 LNMSNTLIE-RLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGT 647 (1141)
Q Consensus 569 L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 647 (1141)
|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++.....
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 999999887 7799999999999999999987788999999999999999999976677898999999999886532110
Q ss_pred ccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcC
Q 001145 648 EISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQN 727 (1141)
Q Consensus 648 ~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (1141)
. ......+.++++|+.|+++.+.. ....+..+..+++
T Consensus 225 ~-----------------------------~~~p~~l~~l~~L~~L~L~~n~l--------------~~~~p~~l~~l~~ 261 (968)
T PLN00113 225 S-----------------------------GEIPYEIGGLTSLNHLDLVYNNL--------------TGPIPSSLGNLKN 261 (968)
T ss_pred C-----------------------------CcCChhHhcCCCCCEEECcCcee--------------ccccChhHhCCCC
Confidence 0 00112345667788888765432 1233455666777
Q ss_pred ccEEEecccCCC-CCCcccCCCCCCCccEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCceEeCCcccCCCCCCcccc
Q 001145 728 LKRLSVEGYSGD-RFPTWIGFPGLPNLTNIVLINCKRCENLPA-LGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQS 805 (1141)
Q Consensus 728 L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~ 805 (1141)
|+.|++.+|... .+|.++. .+++|+.|++++|.+...+|. ++.+++|+.|++.+|......+..+
T Consensus 262 L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~----------- 328 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL----------- 328 (968)
T ss_pred CCEEECcCCeeeccCchhHh--hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-----------
Confidence 888888877653 4565554 577888888888877666665 6778888888887775443332221
Q ss_pred cceeecccccccccccccCccccCCcccEEeeccCccccCCCC----CCCCCeEEEeccCcchhcccccccceeeeeecC
Q 001145 806 LQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPW----FPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDG 881 (1141)
Q Consensus 806 L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~----l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~ 881 (1141)
..+++|+.|++++|.....+|. +++|+.|++++|.....
T Consensus 329 ---------------------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~---------------- 371 (968)
T PLN00113 329 ---------------------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE---------------- 371 (968)
T ss_pred ---------------------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee----------------
Confidence 1234444445544443322332 45666666665542210
Q ss_pred cCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccc
Q 001145 882 FTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVL 961 (1141)
Q Consensus 882 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~ 961 (1141)
.+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus 372 -------~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 372 -------IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred -------CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence 1122444556666666666655566666666666666666666666666666666666666666666666655
Q ss_pred cccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCC
Q 001145 962 PEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVT 1041 (1141)
Q Consensus 962 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 1041 (1141)
+..+..+++|+.|++++|...+.+|..+ ..++|+.|++++|.+....|..+.++++|+.|++++|.+.+.+|..+.+++
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 5555566666666666666655555433 345666666666666666666666666666666666666666666666666
Q ss_pred CcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1042 TLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1042 ~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 66666666666666666666666666666666666666666666666666666666664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-39 Score=413.96 Aligned_cols=507 Identities=20% Similarity=0.248 Sum_probs=399.6
Q ss_pred CCceeEEEEEeCCCCCcCchhhh-cCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCc-cccccccccccCc
Q 001145 490 LAQTRHSSVVCDSDLQTIPESLY-EAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIK-KLHSSISCLISLR 567 (1141)
Q Consensus 490 ~~~~r~l~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~ 567 (1141)
.+..+.+.+..+.....+|..+. .+++||.|++ +.+.+....+. ..+++|++|+|++|.+. .+|..++++++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L--s~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL--SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEEC--cCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 35677888877644445666554 8999999998 66666544442 56899999999999987 6788999999999
Q ss_pred eEecCCCccc-ccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEec
Q 001145 568 YLNMSNTLIE-RLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVG 646 (1141)
Q Consensus 568 ~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 646 (1141)
+|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++....
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 9999999876 789999999999999999999888899999999999999999997767899999999999999663221
Q ss_pred cccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCc
Q 001145 647 TEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQ 726 (1141)
Q Consensus 647 ~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (1141)
.. ......+.++++|+.|+++.+... ...+..+..++
T Consensus 248 l~-----------------------------~~~p~~l~~l~~L~~L~L~~n~l~--------------~~~p~~l~~l~ 284 (968)
T PLN00113 248 LT-----------------------------GPIPSSLGNLKNLQYLFLYQNKLS--------------GPIPPSIFSLQ 284 (968)
T ss_pred ec-----------------------------cccChhHhCCCCCCEEECcCCeee--------------ccCchhHhhcc
Confidence 10 011234556778888888754321 12344566678
Q ss_pred CccEEEecccCCC-CCCcccCCCCCCCccEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCceEeCCcccCCCCCCccc
Q 001145 727 NLKRLSVEGYSGD-RFPTWIGFPGLPNLTNIVLINCKRCENLPA-LGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQ 804 (1141)
Q Consensus 727 ~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~ 804 (1141)
+|+.|++++|... .+|.++. .+++|+.|++.+|.+...+|. ++.+++|+.|++.+|.....++..+.
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--------- 353 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--------- 353 (968)
T ss_pred CcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh---------
Confidence 8999999988754 5677665 788999999999988776666 88899999999988865433332211
Q ss_pred ccceeecccccccccccccCccccCCcccEEeeccCccccCCC----CCCCCCeEEEeccCcchhcccccccceeeeeec
Q 001145 805 SLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMP----WFPSLQHLEFRNCNEMIMKSATNFSTLLTLLID 880 (1141)
Q Consensus 805 ~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~ 880 (1141)
.+++|+.|++++|.....+| .+++|+.|++.+|.....
T Consensus 354 -----------------------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~--------------- 395 (968)
T PLN00113 354 -----------------------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE--------------- 395 (968)
T ss_pred -----------------------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc---------------
Confidence 23444445554443322222 245677777776653211
Q ss_pred CcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcc
Q 001145 881 GFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTV 960 (1141)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~ 960 (1141)
.+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 396 --------~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 396 --------IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred --------CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 134467789999999999988888888889999999999999999888888888899999999999998887
Q ss_pred ccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCC
Q 001145 961 LPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHV 1040 (1141)
Q Consensus 961 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 1040 (1141)
+|..+ ..++|+.|++++|.....+|..+..+++|+.|++++|.+...+|..+.++++|++|+|++|.+.+.+|..+..+
T Consensus 468 ~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 468 LPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred cCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 77754 46899999999999888888889999999999999999988899999999999999999999999999999999
Q ss_pred CCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcch
Q 001145 1041 TTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRL 1102 (1141)
Q Consensus 1041 ~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L 1102 (1141)
++|+.|++++|.+.+.+|..+.++++|+.|++++|++.+.+|.. ..+.++....+.+|+.+
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence 99999999999999999999999999999999999999999875 33345555566677654
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.8e-40 Score=362.57 Aligned_cols=252 Identities=40% Similarity=0.660 Sum_probs=200.9
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-------------
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN------------- 232 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~------------- 232 (1141)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++....
T Consensus 1 re~~~~~l~~~L~~~~-----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT-----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC-----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999852 3688999999999999999999999777889999999999875322
Q ss_pred ----------------HHHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhhCC-CCcee
Q 001145 233 ----------------SQLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIVGT-IPPYY 295 (1141)
Q Consensus 233 ----------------~~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~-~~~~~ 295 (1141)
..+.+.++++++|+||||||+ ...|+.+...++....|++||||||+..++..++. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 157778889999999999985 45898888888877789999999999998877654 56899
Q ss_pred CCCCCHHHHHHHHhhcccCCC-CCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhhccccccccc---Cc
Q 001145 296 LKGLSHDDCWTLFKQRAFAPG-EEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQESDLWNACE---GE 371 (1141)
Q Consensus 296 l~~l~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 371 (1141)
+.+|+++||++||++.++... ...+...+.+++|+++|+|+|||++++|++|+.+.+..+|+.+++...+.... ..
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997665 34556778999999999999999999999998777888999988754433321 34
Q ss_pred cchhHHHHhhccCCcchhhhhhccccccCCCceechHHHHHHHHHcCCcccCc
Q 001145 372 NRILPALRLSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKD 424 (1141)
Q Consensus 372 ~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~ 424 (1141)
..++.++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||...+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 66999999999999999999999999999999999999999999999998653
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-29 Score=268.18 Aligned_cols=181 Identities=13% Similarity=0.073 Sum_probs=105.6
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
|..+.+++.|+|+.|.....-...+-++++|+.|++++|.+...-+.+...+++|++|+|++|.+...-+..|..+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 44556666677776654444444455666777777777766655555566666777777777665554455666666666
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccC---cCccccCCcceEEecCCCCcccccccCCCCCCcCeEeec
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLP---ENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIH 1049 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1049 (1141)
.|.|++|.+...--..|..+.+|++|++++|.+...+. ..|.++++|+.|.+.||++...--..+..+++|+.|+|.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 66666654433222345566666666666666543322 234556666666666666533333445566666666666
Q ss_pred cCCCCcccCcCCCCCCCcCEEeecc
Q 001145 1050 SCPAFKDLPEWIGNLSSLTSLTISD 1074 (1141)
Q Consensus 1050 ~n~~~~~lp~~l~~l~~L~~L~l~~ 1074 (1141)
+|.+...-|..|..+ .|++|.++.
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CCcceeecccccccc-hhhhhhhcc
Confidence 666555555555555 566555543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.9e-28 Score=258.81 Aligned_cols=254 Identities=20% Similarity=0.188 Sum_probs=181.6
Q ss_pred cCCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCC-CCCCCCCCCcceeeecCCCCceEeCCcccCCCCC
Q 001145 722 LQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCEN-LPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSG 800 (1141)
Q Consensus 722 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 800 (1141)
+..+.+|..|.++.|.++.+|... |+.+++|+.|+|..|.+... --.|.++++|+.|.+..|+.-+..+..||+
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~-Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~---- 267 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRS-FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG---- 267 (873)
T ss_pred ccccchheeeecccCcccccCHHH-hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee----
Confidence 444456677777777777777654 34577888888877765432 334777777777777777644443333332
Q ss_pred CcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeec
Q 001145 801 RPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLID 880 (1141)
Q Consensus 801 ~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~ 880 (1141)
+ .++++|++..|....
T Consensus 268 --l----------------------------------------------~kme~l~L~~N~l~~---------------- 283 (873)
T KOG4194|consen 268 --L----------------------------------------------EKMEHLNLETNRLQA---------------- 283 (873)
T ss_pred --e----------------------------------------------cccceeecccchhhh----------------
Confidence 1 223333333333111
Q ss_pred CcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcc
Q 001145 881 GFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTV 960 (1141)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~ 960 (1141)
...+++.+++.|+.|++++|..-..-+...+.+++|++|+|++|.+....++.|..+..|++|+|++|.+...
T Consensus 284 -------vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 284 -------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred -------hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 1124467788899999998876666666778888999999999998777777888899999999999886655
Q ss_pred ccccCCCCCCcCEEEEccCCCCCCc---ccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccC
Q 001145 961 LPEGIEGLTSLRSLSIENCENLAYI---PRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDEL 1037 (1141)
Q Consensus 961 ~~~~~~~l~~L~~L~L~~~~~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l 1037 (1141)
-...|.++.+|++|+|++|...-.+ ...+.++++|+.|.+.+|++..+....|.+++.|+.|+|.+|.+...-|+.|
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 5557788899999999887665333 3357788999999999998887777888999999999999998877778888
Q ss_pred CCCCCcCeEeeccCC
Q 001145 1038 QHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 1038 ~~l~~L~~L~l~~n~ 1052 (1141)
..+ .|++|.+..-+
T Consensus 437 e~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 437 EPM-ELKELVMNSSS 450 (873)
T ss_pred ccc-hhhhhhhcccc
Confidence 877 88888775433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=8.4e-31 Score=267.06 Aligned_cols=465 Identities=23% Similarity=0.286 Sum_probs=278.2
Q ss_pred EEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcc
Q 001145 497 SVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLI 576 (1141)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i 576 (1141)
.++++ .....|.++.....+..++. +++.+...++ .+..+..|+.|+.++|.+.++|++|+.+..|..|+..+|+|
T Consensus 74 ~~~~n-~l~~lp~aig~l~~l~~l~v--s~n~ls~lp~-~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 74 NVHDN-KLSQLPAAIGELEALKSLNV--SHNKLSELPE-QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQI 149 (565)
T ss_pred Eeccc-hhhhCCHHHHHHHHHHHhhc--ccchHhhccH-HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccccc
Confidence 33344 45557788888888888876 5566655444 47788889999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCcccc
Q 001145 577 ERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQL 656 (1141)
Q Consensus 577 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L 656 (1141)
..+|+++.++.+|..|++.+|. ++.+|...-+++.|++||...| .++.+|+.++.|.+|..|++-... +
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk---------i 218 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK---------I 218 (565)
T ss_pred ccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc---------c
Confidence 9999999999999999999865 7777777777999999998877 788899999999888888663221 1
Q ss_pred CCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEeccc
Q 001145 657 HSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGY 736 (1141)
Q Consensus 657 ~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 736 (1141)
..++ .+.+|..|+.|.+. .+.......+.+..++.|..|++..|
T Consensus 219 ~~lP----------------------ef~gcs~L~Elh~g--------------~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 219 RFLP----------------------EFPGCSLLKELHVG--------------ENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred ccCC----------------------CCCccHHHHHHHhc--------------ccHHHhhHHHHhcccccceeeecccc
Confidence 1111 11223333333332 12222233344557789999999999
Q ss_pred CCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccc
Q 001145 737 SGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPS 816 (1141)
Q Consensus 737 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~ 816 (1141)
...++|..+. -+.+|.+|++++|.+....+.+|++ .|+.|.+.+|+ +..+..++...+....+..|+.= ..+..
T Consensus 263 klke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~--~~~dg 336 (565)
T KOG0472|consen 263 KLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSK--IKDDG 336 (565)
T ss_pred ccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh--hccCC
Confidence 9999999876 6889999999999887777779999 99999999987 33343333322221111222110 00000
Q ss_pred cccccccCccccCCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCC
Q 001145 817 LEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENN 896 (1141)
Q Consensus 817 l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 896 (1141)
+.... .+...-+.+ .+ .........
T Consensus 337 lS~se--~~~e~~~t~-------------~~----------------------------------------~~~~~~~~~ 361 (565)
T KOG0472|consen 337 LSQSE--GGTETAMTL-------------PS----------------------------------------ESFPDIYAI 361 (565)
T ss_pred CCCCc--ccccccCCC-------------CC----------------------------------------Ccccchhhh
Confidence 00000 000000000 00 000001112
Q ss_pred CCccEEEEecCCCccccccccCCCC---ccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLV---ALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRS 973 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~---~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~ 973 (1141)
.+.+.|++++- .++.+|....... -.+..+++.|+ +.++|..+..+..+...-+..++..+..|..+..+++|..
T Consensus 362 i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 362 ITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 33344444442 2333333311111 14445555555 2234444443333333222222334444444555555666
Q ss_pred EEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCC
Q 001145 974 LSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPA 1053 (1141)
Q Consensus 974 L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1053 (1141)
|++++ +.+..+|..++.+..|+.|+++.|.+. ..|..+..+..|+.+-.++|++....|.++.++.+|..|++.+|.
T Consensus 440 L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd- 516 (565)
T KOG0472|consen 440 LDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND- 516 (565)
T ss_pred eeccc-chhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-
Confidence 66655 444555555566666666666665433 445555555555555555555544445556777777777776655
Q ss_pred CcccCcCCCCCCCcCEEeeccCCCc
Q 001145 1054 FKDLPEWIGNLSSLTSLTISDCHTI 1078 (1141)
Q Consensus 1054 ~~~lp~~l~~l~~L~~L~l~~n~~~ 1078 (1141)
+..+|+.++++++|++|++.+|++.
T Consensus 517 lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhCChhhccccceeEEEecCCccC
Confidence 4566666777777777777777765
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=9.9e-29 Score=264.54 Aligned_cols=371 Identities=21% Similarity=0.295 Sum_probs=224.9
Q ss_pred CCCcccEEEccCCCCc--cccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEE
Q 001145 539 SFRYLRTLNLSGSGIK--KLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHL 616 (1141)
Q Consensus 539 ~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 616 (1141)
-++..|-.|+++|.++ .+|..+..|+.++.|.|..+++..+|+.++.|.+|++|.+++|+ +..+-.+++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHH
Confidence 3555677788888776 58888999999999999999999999999999999999999976 67777778888999998
Q ss_pred EecCcc-cccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEE
Q 001145 617 MIYGCC-RLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGL 695 (1141)
Q Consensus 617 ~l~~~~-~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l 695 (1141)
.++.|. ....+|..|.+|..|.+|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDL----------------------------------------------------- 110 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDL----------------------------------------------------- 110 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeec-----------------------------------------------------
Confidence 888773 22346777776666555533
Q ss_pred EEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCC
Q 001145 696 SWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPF 775 (1141)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 775 (1141)
+ .+....++..+..-.++-.|++++|++.++|..+. ..+..|-.|+|++|.+....|....+.+
T Consensus 111 S---------------hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 111 S---------------HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred c---------------hhhhhhcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 2 12333456666677788889999999999998763 4677888889999876655555778888
Q ss_pred cceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeE
Q 001145 776 LRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHL 855 (1141)
Q Consensus 776 L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L 855 (1141)
|++|.|++|+.... +|+.+|.+.+|+.|
T Consensus 175 LqtL~Ls~NPL~hf----------------------------------------------------QLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHF----------------------------------------------------QLRQLPSMTSLSVL 202 (1255)
T ss_pred hhhhhcCCChhhHH----------------------------------------------------HHhcCccchhhhhh
Confidence 88888888752210 12333333344444
Q ss_pred EEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccc
Q 001145 856 EFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELI 935 (1141)
Q Consensus 856 ~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 935 (1141)
.+++... .+..+|..+..+.+|..++++.|. +.
T Consensus 203 hms~TqR----------------------------------------------Tl~N~Ptsld~l~NL~dvDlS~N~-Lp 235 (1255)
T KOG0444|consen 203 HMSNTQR----------------------------------------------TLDNIPTSLDDLHNLRDVDLSENN-LP 235 (1255)
T ss_pred hcccccc----------------------------------------------hhhcCCCchhhhhhhhhccccccC-CC
Confidence 4433221 112233334444444444444444 33
Q ss_pred cccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCc-ccCcCcc
Q 001145 936 ALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLA-FLPENFR 1014 (1141)
Q Consensus 936 ~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~ 1014 (1141)
.+|..+.++++|+.|+||+|.+.+ +........+|++|++++ +.+..+|..+..++.|+.|.+.+|++.- -+|.+++
T Consensus 236 ~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 344444455555555555554332 222223334455555555 2333445555555555555555554432 2445555
Q ss_pred ccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccC
Q 001145 1015 NLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1015 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp 1082 (1141)
.+.+|+.+...+|.+ +.+|+++..|..|+.|.|+.|.. -.+|+.+.-++-|+.||+..|+.+...|
T Consensus 314 KL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhHHHHhhcccc-ccCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcCccCCC
Confidence 555555555554443 44555555555555555555442 2455555555555555555555554433
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=2.1e-28 Score=275.71 Aligned_cols=492 Identities=23% Similarity=0.237 Sum_probs=300.9
Q ss_pred CCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhh
Q 001145 504 LQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESI 583 (1141)
Q Consensus 504 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 583 (1141)
...+|..+.....+..|.+ ..|.+...+-++..+.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|..+|.++
T Consensus 10 l~~ip~~i~~~~~~~~ln~--~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~ 87 (1081)
T KOG0618|consen 10 LELIPEQILNNEALQILNL--RRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC 87 (1081)
T ss_pred CcccchhhccHHHHHhhhc--cccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh
Confidence 4445655555444566665 45544444444445555599999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCC
Q 001145 584 CDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAG 663 (1141)
Q Consensus 584 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~ 663 (1141)
.++.+|++|+|.+| .+..+|.++..+++|++|+++.| ....+|..+..++.+..+..... .++..+.
T Consensus 88 ~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N--------~~~~~lg--- 154 (1081)
T KOG0618|consen 88 SNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNN--------EKIQRLG--- 154 (1081)
T ss_pred hhhhcchhheeccc-hhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcc--------hhhhhhc---
Confidence 99999999999985 48999999999999999999998 67778888877776666533211 0000000
Q ss_pred eEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCc
Q 001145 664 ELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPT 743 (1141)
Q Consensus 664 ~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 743 (1141)
.. .++.+++..+. + ...++.
T Consensus 155 ----------------------~~-~ik~~~l~~n~---------------------------------l----~~~~~~ 174 (1081)
T KOG0618|consen 155 ----------------------QT-SIKKLDLRLNV---------------------------------L----GGSFLI 174 (1081)
T ss_pred ----------------------cc-cchhhhhhhhh---------------------------------c----ccchhc
Confidence 00 01111111110 0 111221
Q ss_pred ccCCCCCCCcc-EEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccc
Q 001145 744 WIGFPGLPNLT-NIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWS 822 (1141)
Q Consensus 744 ~~~~~~l~~L~-~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~ 822 (1141)
.+ .+++ .|+|..|... .-.+..+++|+.|....|..... .+
T Consensus 175 ~i-----~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l--------------------~~----------- 216 (1081)
T KOG0618|consen 175 DI-----YNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSEL--------------------EI----------- 216 (1081)
T ss_pred ch-----hhhheeeecccchhh--hhhhhhccchhhhhhhhcccceE--------------------Ee-----------
Confidence 11 1222 3666655443 22345556666666655432211 11
Q ss_pred cCccccCCcccEEeeccCccccCCCC--CCCCCeEEEeccCcchh-cccccccceeeeeecCcCCcchhhhhhhcCCCCc
Q 001145 823 MNTKEEFPSLVKLFINKCERLKNMPW--FPSLQHLEFRNCNEMIM-KSATNFSTLLTLLIDGFTGQLVIFERLLENNPCL 899 (1141)
Q Consensus 823 ~~~~~~~p~L~~L~i~~c~~L~~lp~--l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L 899 (1141)
.-|+|+.|+...|+.....+. ..+|+.++++.+.-... ..+..+.+++.+....+.- ...+..+...++|
T Consensus 217 -----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l--~~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 217 -----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL--VALPLRISRITSL 289 (1081)
T ss_pred -----cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH--HhhHHHHhhhhhH
Confidence 234555555555554433222 23677777776653221 1122233333333322211 2223334444555
Q ss_pred cEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCC-CCEEeEccCCCCccccc-cCCCCCCcCEEEEc
Q 001145 900 TSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSL-LESLEISECHSLTVLPE-GIEGLTSLRSLSIE 977 (1141)
Q Consensus 900 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~-L~~L~Ls~~~~l~~~~~-~~~~l~~L~~L~L~ 977 (1141)
++|.+..|. +..+|.....+++|++|+|..|.+....+..+..+.. |+.|+.+.|+.. ..|. +-..++.|+.|++.
T Consensus 290 ~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 290 VSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHh
Confidence 555555543 4444555555555555555555533222212222222 444444444422 2222 22345668888888
Q ss_pred cCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCccc
Q 001145 978 NCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDL 1057 (1141)
Q Consensus 978 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~l 1057 (1141)
+|......-..+.++++|+.|++++|.+.......+.++..|++|+||||++ +.+|..+.+++.|++|...+|.+ ..+
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l-~~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQL-LSF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCce-eec
Confidence 8777766555788889999999999987766556678899999999999988 56788888899999999888774 467
Q ss_pred CcCCCCCCCcCEEeeccCCCccc-cCCCCCCCCCcceEeccCCcchHHhhccCCCCCccceeccceeeeC
Q 001145 1058 PEWIGNLSSLTSLTISDCHTIIS-LPANLQHLTTLQHLSIRECPRLESRCKKYVGEDWLKVAHIPHTYIG 1126 (1141)
Q Consensus 1058 p~~l~~l~~L~~L~l~~n~~~~~-lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~i~~i~~~~~~ 1126 (1141)
| .+..+++|+.+|++.|.+... +|+.... |+|++||++||+.+. ......+..++|...+++
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~-----~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV-----FDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc-----cchhhhHHhhhhhheecc
Confidence 7 578999999999999988754 4443322 799999999998643 123334444555544444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=5.9e-30 Score=260.95 Aligned_cols=480 Identities=22% Similarity=0.278 Sum_probs=289.2
Q ss_pred CcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCC
Q 001145 517 LRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSD 596 (1141)
Q Consensus 517 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 596 (1141)
+..+++ ..+.+....++ +.++..|.||++.+|.+..+|.+|+.+..++.|+.++|++.++|+.++.+.+|..|+.++
T Consensus 47 l~~lil--s~N~l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLIL--SHNDLEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhh--ccCchhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 344554 45555444343 678888899999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCc
Q 001145 597 CHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSG 676 (1141)
Q Consensus 597 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~ 676 (1141)
|. ..++|++++.+..|..|+..+| .+...|.+++.+.+|..+..-.. ++..++
T Consensus 124 n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n---------~l~~l~---------------- 176 (565)
T KOG0472|consen 124 NE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGN---------KLKALP---------------- 176 (565)
T ss_pred cc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhcccc---------chhhCC----------------
Confidence 65 7788888999999999888777 67788888887776666643110 111110
Q ss_pred chHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCcccCCCCCCCccEE
Q 001145 677 SDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNI 756 (1141)
Q Consensus 677 ~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L 756 (1141)
.....++.|++|+.. .+..+..+..+..+..|..|++..|.+..+|. |+.+..|++|
T Consensus 177 -----~~~i~m~~L~~ld~~---------------~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe---f~gcs~L~El 233 (565)
T KOG0472|consen 177 -----ENHIAMKRLKHLDCN---------------SNLLETLPPELGGLESLELLYLRRNKIRFLPE---FPGCSLLKEL 233 (565)
T ss_pred -----HHHHHHHHHHhcccc---------------hhhhhcCChhhcchhhhHHHHhhhcccccCCC---CCccHHHHHH
Confidence 111113334444432 22333444445555555555555555555552 2244555555
Q ss_pred EEeccCCCCCCCC--CCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccE
Q 001145 757 VLINCKRCENLPA--LGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVK 834 (1141)
Q Consensus 757 ~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~ 834 (1141)
++..|.+. .+|. ...+++|..|++..|+ ++..+.+.+ .+.+|+.
T Consensus 234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c--------------------------------lLrsL~r 279 (565)
T KOG0472|consen 234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC--------------------------------LLRSLER 279 (565)
T ss_pred HhcccHHH-hhHHHHhcccccceeeeccccc-cccCchHHH--------------------------------Hhhhhhh
Confidence 55544322 1222 3345555555554443 222222221 2223333
Q ss_pred EeeccCccccCCCC-CC--CCCeEEEeccCcchhcc-cccccc---eeeeeecCcCCcchhhhhhhcCCCCccEEEEecC
Q 001145 835 LFINKCERLKNMPW-FP--SLQHLEFRNCNEMIMKS-ATNFST---LLTLLIDGFTGQLVIFERLLENNPCLTSLTISSC 907 (1141)
Q Consensus 835 L~i~~c~~L~~lp~-l~--~L~~L~l~~~~~~~~~~-~~~~~~---l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 907 (1141)
|++++. .+..+|. +. +|+.|.+.+++..+... +-+..+ ++.|.-...+ +.+ .+=+.=.-+.-
T Consensus 280 LDlSNN-~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~-------dgl---S~se~~~e~~~ 348 (565)
T KOG0472|consen 280 LDLSNN-DISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD-------DGL---SQSEGGTETAM 348 (565)
T ss_pred hcccCC-ccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc-------CCC---CCCcccccccC
Confidence 333332 2233332 11 44455555555332210 000000 0000000000 000 00000000000
Q ss_pred CCccccccccCCCCccCeeeccccccccccccc-cc--CCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCC
Q 001145 908 PNLRSISSKLGCLVALKSLTIRWCQELIALPQE-IQ--NLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAY 984 (1141)
Q Consensus 908 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~-l~--~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~ 984 (1141)
..............+.+.|++++-+.+ .+|.. |. .-.-....+++.|++ ..+|..+..+..+.+.-+..++....
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isf 426 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISF 426 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCcccc
Confidence 000000001123456788888877644 45543 22 222377889999884 45777766666666666667788888
Q ss_pred cccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccC-cCCCC
Q 001145 985 IPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLP-EWIGN 1063 (1141)
Q Consensus 985 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp-~~l~~ 1063 (1141)
+|..+..+++|..|++++|.+- .+|..++.+-.|+.|+++.|++ ..+|+.+..+..|+.+-.++|.+ +.++ +.+.+
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi-~~vd~~~l~n 503 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQI-GSVDPSGLKN 503 (565)
T ss_pred chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccc-cccChHHhhh
Confidence 8888999999999999987654 7788888888999999999977 56788776666777777777764 5555 55999
Q ss_pred CCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1064 LSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1064 l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+.+|..||+.+|.+ ..+|..++++++|++|+++|||
T Consensus 504 m~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCch-hhCChhhccccceeEEEecCCc
Confidence 99999999988755 5678889999999999999997
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.4e-22 Score=259.96 Aligned_cols=353 Identities=23% Similarity=0.348 Sum_probs=259.8
Q ss_pred chhhhcCCCCcEEeccccC----CCCCCCCccccCCC-CcccEEEccCCCCccccccccccccCceEecCCCcccccchh
Q 001145 508 PESLYEAKKLRTLNLLFSK----GDLGEAPPKLFSSF-RYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPES 582 (1141)
Q Consensus 508 ~~~~~~~~~Lr~L~l~~~~----~~~~~~~~~~~~~l-~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~ 582 (1141)
+.+|..+++|+.|.+.... +.....++..|..+ ..||.|.+.++.++.+|..+ .+.+|++|+++++.++.+|..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 4567889999999862111 11111234445555 46999999999999999888 579999999999999999999
Q ss_pred hhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCC
Q 001145 583 ICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLA 662 (1141)
Q Consensus 583 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~ 662 (1141)
+..+++|++|+|++|..+..+|. ++.+++|++|++.+|..+..+|..++++++|+.|++.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~------------------- 689 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS------------------- 689 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC-------------------
Confidence 99999999999999988899986 8999999999999998888888887777776666331
Q ss_pred CeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCC
Q 001145 663 GELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFP 742 (1141)
Q Consensus 663 ~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 742 (1141)
.+. ....+|
T Consensus 690 ----------------------------------~c~-------------------------------------~L~~Lp 698 (1153)
T PLN03210 690 ----------------------------------RCE-------------------------------------NLEILP 698 (1153)
T ss_pred ----------------------------------CCC-------------------------------------CcCccC
Confidence 000 112233
Q ss_pred cccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccc
Q 001145 743 TWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWS 822 (1141)
Q Consensus 743 ~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~ 822 (1141)
..+ .+++|+.|.+++|.....+|.+ .++|+.|++.++. +..++..+
T Consensus 699 ~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~---------------------------- 744 (1153)
T PLN03210 699 TGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNL---------------------------- 744 (1153)
T ss_pred CcC---CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccccc----------------------------
Confidence 322 3677888888888655555543 4578888887764 22222110
Q ss_pred cCccccCCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEE
Q 001145 823 MNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSL 902 (1141)
Q Consensus 823 ~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L 902 (1141)
.+++|..|.+.+|.... ++ .. .. ...+......++|+.|
T Consensus 745 -----~l~~L~~L~l~~~~~~~-l~------------------~~---~~--------------~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 745 -----RLENLDELILCEMKSEK-LW------------------ER---VQ--------------PLTPLMTMLSPSLTRL 783 (1153)
T ss_pred -----cccccccccccccchhh-cc------------------cc---cc--------------ccchhhhhccccchhe
Confidence 12233333332221100 00 00 00 0000112345789999
Q ss_pred EEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCC
Q 001145 903 TISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENL 982 (1141)
Q Consensus 903 ~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l 982 (1141)
++++|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|. +
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~-i 858 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG-I 858 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC-C
Confidence 999999999999999999999999999999888888766 7999999999999988877763 4689999999965 4
Q ss_pred CCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCccc
Q 001145 983 AYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELAS 1032 (1141)
Q Consensus 983 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 1032 (1141)
..+|.++..+++|+.|++++|+.+..+|.....+++|+.|++++|..+..
T Consensus 859 ~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 57888999999999999999999888888888999999999999976653
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.4e-26 Score=248.19 Aligned_cols=369 Identities=22% Similarity=0.291 Sum_probs=261.1
Q ss_pred cccccCceEecCCCccc--ccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCC
Q 001145 561 SCLISLRYLNMSNTLIE--RLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQ 638 (1141)
Q Consensus 561 ~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 638 (1141)
+-|+-.|-.|+++|.++ ..|.++..++.++.|.|... .+..+|++++.|.+|+||.+..| .+..+-..++.|+.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhH
Confidence 45666778899999887 78999999999999999884 58899999999999999999888 4444444444444444
Q ss_pred ccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHh
Q 001145 639 TLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEV 718 (1141)
Q Consensus 639 ~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 718 (1141)
.+.. .-+..
T Consensus 82 sv~~-----------------------------------------------------R~N~L------------------ 90 (1255)
T KOG0444|consen 82 SVIV-----------------------------------------------------RDNNL------------------ 90 (1255)
T ss_pred HHhh-----------------------------------------------------hcccc------------------
Confidence 3311 11000
Q ss_pred hcccCCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCC
Q 001145 719 LDSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRG 798 (1141)
Q Consensus 719 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 798 (1141)
....+|..+. .+..|+.|+|++|.+.+....+..-.++-.|+|++|. ++.|+..
T Consensus 91 ------------------KnsGiP~diF--~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~----- 144 (1255)
T KOG0444|consen 91 ------------------KNSGIPTDIF--RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNS----- 144 (1255)
T ss_pred ------------------ccCCCCchhc--ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCch-----
Confidence 0122333332 3555555555555544433335555566666666554 4444432
Q ss_pred CCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeee
Q 001145 799 SGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLL 878 (1141)
Q Consensus 799 ~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 878 (1141)
.|-+|..|-+.+++++. |..+|
T Consensus 145 ---lfinLtDLLfLDLS~Nr------------------------Le~LP------------------------------- 166 (1255)
T KOG0444|consen 145 ---LFINLTDLLFLDLSNNR------------------------LEMLP------------------------------- 166 (1255)
T ss_pred ---HHHhhHhHhhhccccch------------------------hhhcC-------------------------------
Confidence 23334333333332211 11111
Q ss_pred ecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeeccccccc-ccccccccCCCCCCEEeEccCCC
Q 001145 879 IDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQEL-IALPQEIQNLSLLESLEISECHS 957 (1141)
Q Consensus 879 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~Ls~~~~ 957 (1141)
.-...+..|++|.|++|+....--..+..+++|..|.+++.+-+ ..+|.++..+.+|..+|+|.|.
T Consensus 167 ------------PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~- 233 (1255)
T KOG0444|consen 167 ------------PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN- 233 (1255)
T ss_pred ------------HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-
Confidence 12344556666666666643322223345666777777765543 3578889999999999999987
Q ss_pred CccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCc-cccccc
Q 001145 958 LTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPEL-ASLPDE 1036 (1141)
Q Consensus 958 l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~ 1036 (1141)
+...|+.+..+++|+.|+|++|.+. .+....+...+|++|+++.|++. .+|..+..+++|+.|.+.+|++. +-+|.+
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 6678999999999999999996554 45556778889999999999876 78999999999999999999875 578999
Q ss_pred CCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcchH
Q 001145 1037 LQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRLE 1103 (1141)
Q Consensus 1037 l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L~ 1103 (1141)
++.+..|+.++.++|. ++.+|+++..|..|+.|.|+.|.++ .+|+.++.++-|..|++..||+|-
T Consensus 312 IGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 9999999999999865 7899999999999999999987665 679999999999999999999875
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-25 Score=253.16 Aligned_cols=453 Identities=22% Similarity=0.264 Sum_probs=237.4
Q ss_pred CCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecC
Q 001145 516 KLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLS 595 (1141)
Q Consensus 516 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 595 (1141)
+|++|++ +.+.+... |..+..+.+|+.|.++.|.+...|.++.++.+|+||+|.+|.+..+|.++..+++|++|+++
T Consensus 46 ~L~~l~l--snn~~~~f-p~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDL--SNNQISSF-PIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeec--cccccccC-CchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 3777776 44444333 33466777777777777777777777777777888888777777777777777788888877
Q ss_pred CCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCce--EeccccCCCccccCCCCCCCeEEEcccccc
Q 001145 596 DCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVF--IVGTEISQGLKQLHSLPLAGELNIRKLENV 673 (1141)
Q Consensus 596 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~--~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~ 673 (1141)
+|. ....|.-+..+..+..+..++|..+..++... .+.+++- ..+....-.+..+.. .+.++.-+.
T Consensus 123 ~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~-----~ldLr~N~~- 190 (1081)
T KOG0618|consen 123 FNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH-----QLDLRYNEM- 190 (1081)
T ss_pred hhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe-----eeecccchh-
Confidence 765 45566666666666666666552222221111 1211110 000000001111111 000000000
Q ss_pred CCcchHHHhcccCCCCCceEEEEEecCCC------ccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCcccCC
Q 001145 674 KSGSDAAFASLRRKPKLHSLGLSWRNNHD------ALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGF 747 (1141)
Q Consensus 674 ~~~~~~~~~~L~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 747 (1141)
....+..+.+|+.|....+.... .........+... ....-.-+.+|+.++++.+....+|.|++
T Consensus 191 ------~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~n~l~~lp~wi~- 261 (1081)
T KOG0618|consen 191 ------EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISHNNLSNLPEWIG- 261 (1081)
T ss_pred ------hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce--eeccccccccceeeecchhhhhcchHHHH-
Confidence 01112222222222221110000 0000000000000 00111123455666666666666666654
Q ss_pred CCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccc
Q 001145 748 PGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKE 827 (1141)
Q Consensus 748 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~ 827 (1141)
.+.+|+.+...+|.++.....+....+|+.|.+..|. +++++... .
T Consensus 262 -~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--------------------------------e 307 (1081)
T KOG0618|consen 262 -ACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFL--------------------------------E 307 (1081)
T ss_pred -hcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--------------------------------c
Confidence 4555555555555543322224444444444444432 22221110 0
Q ss_pred cCCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCC-CccEEEEec
Q 001145 828 EFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNP-CLTSLTISS 906 (1141)
Q Consensus 828 ~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~L~~ 906 (1141)
. +.+|+.|++..+....... ..+.... +|..|+.+.
T Consensus 308 ~--------------------~~sL~tLdL~~N~L~~lp~-----------------------~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 308 G--------------------LKSLRTLDLQSNNLPSLPD-----------------------NFLAVLNASLNTLNVSS 344 (1081)
T ss_pred c--------------------cceeeeeeehhccccccch-----------------------HHHhhhhHHHHHHhhhh
Confidence 1 2233344443333211110 0011111 134444444
Q ss_pred CCCccccc-cccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc-cCCCCCCcCEEEEccCCCCCC
Q 001145 907 CPNLRSIS-SKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE-GIEGLTSLRSLSIENCENLAY 984 (1141)
Q Consensus 907 ~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l~~L~~L~L~~~~~l~~ 984 (1141)
+.. ...| ..-..++.|+.|++.+|.+....-..+.++.+|+.|+|++|. +..+|. .+.+++.|+.|+|+| +.++.
T Consensus 345 n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~ 421 (1081)
T KOG0618|consen 345 NKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSG-NKLTT 421 (1081)
T ss_pred ccc-cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhccc-chhhh
Confidence 432 2222 122356678888999888877655578888899999999987 444665 567788888999999 56667
Q ss_pred cccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCccc-ccccCCCCCCcCeEeeccCCCCcccCcCCCC
Q 001145 985 IPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELAS-LPDELQHVTTLQSLEIHSCPAFKDLPEWIGN 1063 (1141)
Q Consensus 985 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~ 1063 (1141)
+|..+..++.|++|...+|.+. .+| .+..+++|+.+|++.|++... +|+.... ++|++||++||..+..--..+..
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~ 498 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKV 498 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHH
Confidence 7888888888999888887776 455 778888888999988887653 3333322 78888888888753322233444
Q ss_pred CCCcCEEeeccC
Q 001145 1064 LSSLTSLTISDC 1075 (1141)
Q Consensus 1064 l~~L~~L~l~~n 1075 (1141)
+.++...++.-+
T Consensus 499 l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 499 LKSLSQMDITLN 510 (1081)
T ss_pred hhhhhheecccC
Confidence 455555555443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=4.9e-18 Score=174.42 Aligned_cols=135 Identities=24% Similarity=0.328 Sum_probs=102.5
Q ss_pred CCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccc-cccccccccCceEecCC-Ccccccc
Q 001145 503 DLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISLRYLNMSN-TLIERLP 580 (1141)
Q Consensus 503 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~-~~i~~lp 580 (1141)
.+..+|..+.. ....+.| ..|.+..+++.+|..+++||.|||++|+|+.+ |..|.+|..|-.|-+.+ |+|+.+|
T Consensus 57 GL~eVP~~LP~--~tveirL--dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 57 GLTEVPANLPP--ETVEIRL--DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCcccCCC--cceEEEe--ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34445554432 2233444 67888889999999999999999999999987 77899999888777666 8999998
Q ss_pred h-hhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcc-cCCCCCCCccCc
Q 001145 581 E-SICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDH-IGRLIQLQTLPV 642 (1141)
Q Consensus 581 ~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~ 642 (1141)
+ .|++|..|+-|.+..|..--.....+..|++|+.|.+..| .+..++.+ +..+..++++..
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhh
Confidence 4 4889999999999888755555667888999999998887 56666663 666666666643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.7e-15 Score=179.26 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=50.1
Q ss_pred CcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecC
Q 001145 541 RYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYG 620 (1141)
Q Consensus 541 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 620 (1141)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence 445678888888888888775 3788888888888888753 4677777777764 5556642 24556666655
Q ss_pred c
Q 001145 621 C 621 (1141)
Q Consensus 621 ~ 621 (1141)
|
T Consensus 272 N 272 (788)
T PRK15387 272 N 272 (788)
T ss_pred C
Confidence 5
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=7.9e-17 Score=145.86 Aligned_cols=186 Identities=29% Similarity=0.416 Sum_probs=143.5
Q ss_pred CCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccE
Q 001145 918 GCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEH 997 (1141)
Q Consensus 918 ~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 997 (1141)
-.+.+.+.|.+++|+++ .+|..+..+.+|+.|++++|+ ++.+|..++++++|+.|+++- +.+..+|.+|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence 35566777888888854 455577888889999998887 455788888899999999987 556678899999999999
Q ss_pred EeecCCCCCc-ccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCC
Q 001145 998 LTIMYCPSLA-FLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCH 1076 (1141)
Q Consensus 998 L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~ 1076 (1141)
|++.+|.+.+ .+|..|..++.|+-|+++.|.+ +.+|..++.+++|+.|.+..|..+ ++|..++.++.|++|++.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 9999888754 5788899999999999999987 788889999999999999998855 678889999999999999987
Q ss_pred CccccCCCCCCC---CCcceEeccCCc---chHHhhccC
Q 001145 1077 TIISLPANLQHL---TTLQHLSIRECP---RLESRCKKY 1109 (1141)
Q Consensus 1077 ~~~~lp~~~~~l---~~L~~L~l~~c~---~L~~~~~~~ 1109 (1141)
+. .+|..+..+ .+=+++.+..|| .+.+++..+
T Consensus 185 l~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG 222 (264)
T KOG0617|consen 185 LT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLG 222 (264)
T ss_pred ee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhh
Confidence 65 444433332 223444455554 344555543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=1.4e-13 Score=163.20 Aligned_cols=263 Identities=24% Similarity=0.194 Sum_probs=173.1
Q ss_pred CccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCccccc
Q 001145 727 NLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSL 806 (1141)
Q Consensus 727 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L 806 (1141)
.-..|+++++....+|..+. ++|+.|.+.+|.+.. +|.+ +++|++|++++|. ++.++.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~-LtsLP~-------------- 259 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQ-LTSLPV-------------- 259 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh----cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCc-cCcccC--------------
Confidence 35567888888788887653 478888888876543 4432 5778888887764 222221
Q ss_pred ceeecccccccccccccCccccCCcccEEeeccCccccCCCCC-CCCCeEEEeccCcchhcccccccceeeeeecCcCCc
Q 001145 807 QELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWF-PSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQ 885 (1141)
Q Consensus 807 ~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 885 (1141)
..++|+.|++.+|. +..+|.+ ++|+.|++++|.....
T Consensus 260 ---------------------lp~sL~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~L-------------------- 297 (788)
T PRK15387 260 ---------------------LPPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSL-------------------- 297 (788)
T ss_pred ---------------------cccccceeeccCCc-hhhhhhchhhcCEEECcCCccccc--------------------
Confidence 12344455554442 4444442 3567777766642211
Q ss_pred chhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccC
Q 001145 886 LVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGI 965 (1141)
Q Consensus 886 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~ 965 (1141)
....++|+.|++++|. ++.+|.. ..+|+.|.+++|.+. .+|. ..++|+.|+|++|++.. +|..
T Consensus 298 -------P~~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~l- 360 (788)
T PRK15387 298 -------PVLPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLAS-LPTL- 360 (788)
T ss_pred -------cccccccceeECCCCc-cccCCCC---cccccccccccCccc-cccc---cccccceEecCCCccCC-CCCC-
Confidence 0123678999999875 4445542 346888889988865 3553 12478999999988554 5542
Q ss_pred CCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCe
Q 001145 966 EGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQS 1045 (1141)
Q Consensus 966 ~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1045 (1141)
.++|+.|++++|... .+|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.+. .+|.. ..+|+.
T Consensus 361 --p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~ 426 (788)
T PRK15387 361 --PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLS 426 (788)
T ss_pred --Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhh
Confidence 357888888886544 56643 3578999999988764 4433 367889999999875 46653 346888
Q ss_pred EeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCC
Q 001145 1046 LEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANL 1085 (1141)
Q Consensus 1046 L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~ 1085 (1141)
|++++|.+ +.+|..+.++++|+.|++++|++.+..|..+
T Consensus 427 L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCcc-cccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 89988875 4788888889999999999998887765543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=6.9e-14 Score=167.13 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=51.5
Q ss_pred CcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecC
Q 001145 541 RYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYG 620 (1141)
Q Consensus 541 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 620 (1141)
.+...|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 345677777777777776653 477888888888888877664 477888887765 556666543 3677777776
Q ss_pred c
Q 001145 621 C 621 (1141)
Q Consensus 621 ~ 621 (1141)
|
T Consensus 251 N 251 (754)
T PRK15370 251 N 251 (754)
T ss_pred C
Confidence 6
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.7e-15 Score=135.12 Aligned_cols=184 Identities=24% Similarity=0.320 Sum_probs=153.1
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+...+.|.+++|. ++.+|..+..+.+|+.|++++|+ +..+|..+..+++|+.|+++-|. +..+|.+|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 4556788899999975 67778889999999999999998 55788899999999999999877 566899999999999
Q ss_pred EEEEccCCCCC-CcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccC
Q 001145 973 SLSIENCENLA-YIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSC 1051 (1141)
Q Consensus 973 ~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1051 (1141)
.|++.+|+..+ .+|..|..+..|+-|++++|.+. .+|...+.+++|+.|.+..|.+. ++|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999987654 67888889999999999999875 78889999999999999999884 67899999999999999998
Q ss_pred CCCcccCcCCCCCC---CcCEEeeccCCCccccC
Q 001145 1052 PAFKDLPEWIGNLS---SLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1052 ~~~~~lp~~l~~l~---~L~~L~l~~n~~~~~lp 1082 (1141)
. ++.+|+.++++. +=+.+.+.+|+....+.
T Consensus 184 r-l~vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 184 R-LTVLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred e-eeecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 7 556776665543 23345566666655443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=6.1e-13 Score=159.13 Aligned_cols=162 Identities=20% Similarity=0.234 Sum_probs=89.3
Q ss_pred CccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEc
Q 001145 898 CLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIE 977 (1141)
Q Consensus 898 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~ 977 (1141)
+|+.|++++|. ++.+|..+ +++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|+++
T Consensus 263 ~L~~L~Ls~N~-L~~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls 333 (754)
T PRK15370 263 ALQSLDLFHNK-ISCLPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAG 333 (754)
T ss_pred CCCEEECcCCc-cCcccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceecccc
Confidence 56777777654 34455433 246777777777644 3443322 46777777776644 344432 2567777777
Q ss_pred cCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCccc
Q 001145 978 NCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDL 1057 (1141)
Q Consensus 978 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~l 1057 (1141)
+|... .+|..+ .++|+.|++++|.+. .+|..+ .++|+.|+|++|.+. .+|..+. .+|+.|++++|.+. .+
T Consensus 334 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~L 403 (754)
T PRK15370 334 ENALT-SLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RL 403 (754)
T ss_pred CCccc-cCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cC
Confidence 75443 345433 256777777766654 334333 246666666666653 3444432 25666666666543 44
Q ss_pred CcC----CCCCCCcCEEeeccCCCc
Q 001145 1058 PEW----IGNLSSLTSLTISDCHTI 1078 (1141)
Q Consensus 1058 p~~----l~~l~~L~~L~l~~n~~~ 1078 (1141)
|.. ...++++..|++.+|++.
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCcc
Confidence 432 233456666666666654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=6e-14 Score=157.11 Aligned_cols=183 Identities=17% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCCCccCeeecccccccccccccccCC---CCCCEEeEccCCCCc----cccccCCCC-CCcCEEEEccCCCCC----Cc
Q 001145 918 GCLVALKSLTIRWCQELIALPQEIQNL---SLLESLEISECHSLT----VLPEGIEGL-TSLRSLSIENCENLA----YI 985 (1141)
Q Consensus 918 ~~~~~L~~L~L~~~~~~~~l~~~l~~l---~~L~~L~Ls~~~~l~----~~~~~~~~l-~~L~~L~L~~~~~l~----~l 985 (1141)
..+++|+.|++++|.+....+..+..+ ++|++|++++|+... .+...+..+ ++|+.|++++|.... .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 334455555555544433222222222 225555555554331 111122233 455555555554431 12
Q ss_pred ccccCCCCCccEEeecCCCCCcc----cCcCccccCCcceEEecCCCCcc----cccccCCCCCCcCeEeeccCCCCccc
Q 001145 986 PRGLGHLIALEHLTIMYCPSLAF----LPENFRNLTMLKSLCILSCPELA----SLPDELQHVTTLQSLEIHSCPAFKDL 1057 (1141)
Q Consensus 986 ~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~l 1057 (1141)
+..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+.. .++..+..+++|+.|++++|.+....
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 22334444555555555544321 11222333455555555554432 12233444555555555555543211
Q ss_pred CcCC-----CCCCCcCEEeeccCCCc----cccCCCCCCCCCcceEeccCCc
Q 001145 1058 PEWI-----GNLSSLTSLTISDCHTI----ISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1058 p~~l-----~~l~~L~~L~l~~n~~~----~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
...+ ...++|++|++++|.+. ..+...+..+++|+.+++++|.
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 1000 12345555666555543 1122223333555666665553
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=5.1e-14 Score=145.25 Aligned_cols=209 Identities=16% Similarity=0.184 Sum_probs=131.6
Q ss_pred hhhcCCCCccEEEEecCCCccccccc-cCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc-cCCCC
Q 001145 891 RLLENNPCLTSLTISSCPNLRSISSK-LGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE-GIEGL 968 (1141)
Q Consensus 891 ~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l 968 (1141)
+.|.++++|.+|-+.+++.++.+|.. |.++.+|+.|.+.-|++.-.....+..+++|..|.+.+|.+- .++. .+..+
T Consensus 109 ~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l 187 (498)
T KOG4237|consen 109 DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGL 187 (498)
T ss_pred HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccch
Confidence 44555555555555554444444433 455555555555555544444445566666666666665533 2333 55566
Q ss_pred CCcCEEEEccCCCC------------CCcccccCCCCCccEEeec-------------------------CCCCCcccC-
Q 001145 969 TSLRSLSIENCENL------------AYIPRGLGHLIALEHLTIM-------------------------YCPSLAFLP- 1010 (1141)
Q Consensus 969 ~~L~~L~L~~~~~l------------~~l~~~~~~l~~L~~L~l~-------------------------~~~~~~~~~- 1010 (1141)
.+++.+.+..|... ...|.++++........+. .|.....-|
T Consensus 188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~ 267 (498)
T KOG4237|consen 188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA 267 (498)
T ss_pred hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH
Confidence 66666666555421 1112222222221111111 111111111
Q ss_pred cCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCC
Q 001145 1011 ENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTT 1090 (1141)
Q Consensus 1011 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~ 1090 (1141)
..|..+++|++|+|++|.+...-+.+|..+..+++|.|..|.+-..-...|.++..|+.|+|++|.++...|..|..+.+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 23677899999999999998877888999999999999999865444466788999999999999999999999999999
Q ss_pred cceEeccCCc
Q 001145 1091 LQHLSIRECP 1100 (1141)
Q Consensus 1091 L~~L~l~~c~ 1100 (1141)
|..|++-.||
T Consensus 348 l~~l~l~~Np 357 (498)
T KOG4237|consen 348 LSTLNLLSNP 357 (498)
T ss_pred eeeeehccCc
Confidence 9999999887
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=3.1e-13 Score=151.42 Aligned_cols=254 Identities=19% Similarity=0.116 Sum_probs=176.0
Q ss_pred CCCCCCCeEEEeccCcch------hcccccccceeeeeecCcCCc-----chhhhhhhcCCCCccEEEEecCCCcccccc
Q 001145 847 PWFPSLQHLEFRNCNEMI------MKSATNFSTLLTLLIDGFTGQ-----LVIFERLLENNPCLTSLTISSCPNLRSISS 915 (1141)
Q Consensus 847 p~l~~L~~L~l~~~~~~~------~~~~~~~~~l~~L~l~~~~~~-----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 915 (1141)
+.+++|+.|++++|.... ...+...+.++.+.+.+.... .......+..+++|+.|++++|......+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 346779999999988522 112334556777877664322 122345567789999999999887654444
Q ss_pred ccCCC---CccCeeecccccccc----cccccccCC-CCCCEEeEccCCCCcc----ccccCCCCCCcCEEEEccCCCCC
Q 001145 916 KLGCL---VALKSLTIRWCQELI----ALPQEIQNL-SLLESLEISECHSLTV----LPEGIEGLTSLRSLSIENCENLA 983 (1141)
Q Consensus 916 ~~~~~---~~L~~L~L~~~~~~~----~l~~~l~~l-~~L~~L~Ls~~~~l~~----~~~~~~~l~~L~~L~L~~~~~l~ 983 (1141)
.+..+ ++|++|++++|.+.. .+...+..+ ++|+.|++++|.+... ++..+..+++|++|++++|....
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 44444 449999999998763 223345666 8999999999987632 33355677899999999987663
Q ss_pred ----CcccccCCCCCccEEeecCCCCCcc----cCcCccccCCcceEEecCCCCccccc----ccC-CCCCCcCeEeecc
Q 001145 984 ----YIPRGLGHLIALEHLTIMYCPSLAF----LPENFRNLTMLKSLCILSCPELASLP----DEL-QHVTTLQSLEIHS 1050 (1141)
Q Consensus 984 ----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~----~~l-~~l~~L~~L~l~~ 1050 (1141)
.++..+..+++|+.|++++|.+... +...+..+++|+.|++++|.+..... ..+ ...+.|++|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 2334556678999999999987533 33456678899999999998764211 111 1347899999999
Q ss_pred CCCCc----ccCcCCCCCCCcCEEeeccCCCccc----cCCCCCCC-CCcceEeccCCc
Q 001145 1051 CPAFK----DLPEWIGNLSSLTSLTISDCHTIIS----LPANLQHL-TTLQHLSIRECP 1100 (1141)
Q Consensus 1051 n~~~~----~lp~~l~~l~~L~~L~l~~n~~~~~----lp~~~~~l-~~L~~L~l~~c~ 1100 (1141)
|.+.. .+...+..+++|+.+++++|.+... +...+... +.|+.|++.++|
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 98752 3345556678999999999988744 44334444 678888888775
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-12 Score=156.21 Aligned_cols=129 Identities=27% Similarity=0.334 Sum_probs=100.8
Q ss_pred cCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCC--Cccccc-cccccccCceEecCCC-cccccchhhhcCCC
Q 001145 513 EAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSG--IKKLHS-SISCLISLRYLNMSNT-LIERLPESICDLVY 588 (1141)
Q Consensus 513 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--l~~lp~-~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~ 588 (1141)
+....|...+ .++.+..+... ..++.|++|-+..|. +..++. .|..+++|++|||++| .+.+||++|++|.+
T Consensus 521 ~~~~~rr~s~--~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSL--MNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred chhheeEEEE--eccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 3456666665 33333322222 344579999999986 566654 4788999999999976 68899999999999
Q ss_pred CcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEec
Q 001145 589 LQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVG 646 (1141)
Q Consensus 589 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 646 (1141)
||+|+++++. +..+|..+.+|++|.||++..+..+..+|..+..|.+|++|.++...
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999965 88999999999999999999887777776667779999999776543
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.02 E-value=1.3e-09 Score=120.74 Aligned_cols=258 Identities=19% Similarity=0.157 Sum_probs=142.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-chhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-DFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~l~~~l 239 (1141)
.+|+|+++.++.+..++.... ..+.....+.|+|++|+||||+|+.+++... ..+. ++..+. .....+...+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~--~~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~~---~~~~~~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAK--KRGEALDHVLLYGPPGLGKTTLANIIANEMG--VNIR---ITSGPALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHH--hcCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCeE---EEecccccChHHHHHHH
Confidence 569999999999988876431 1122455788999999999999999998433 2221 111110 1111222322
Q ss_pred c--CcceeeeecCCCCCChHHHHHHHHhccCC-------------------CCCcEEEEEcCchHHHHhh--CCCCceeC
Q 001145 240 R--GRRYLLVLDDVWNEDHEEWDKLRVSLSDG-------------------AEGSRVIVTTRSAKVATIV--GTIPPYYL 296 (1141)
Q Consensus 240 ~--~k~~LlvlDdvw~~~~~~~~~l~~~l~~~-------------------~~gs~ilvTtr~~~v~~~~--~~~~~~~l 296 (1141)
. ++.-++++|++..-.....+.+...+... .+.+-|..|++...+...+ .....+++
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l 177 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRL 177 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeec
Confidence 2 34668899998543332333332222111 1234455666654333222 11236899
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhhcccccccc-cCccchh
Q 001145 297 KGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQESDLWNAC-EGENRIL 375 (1141)
Q Consensus 297 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~-~~~~~~~ 375 (1141)
.+++.++..+++.+.+..... ....+....|++.|+|.|-.+..+...+. .|....... ... ..-....
T Consensus 178 ~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~--~I~~~~v~~~l 247 (328)
T PRK00080 178 EFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG--VITKEIADKAL 247 (328)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCC--CCCHHHHHHHH
Confidence 999999999999987643222 22335688999999999965554444321 222111100 000 0001233
Q ss_pred HHHHhhccCCcchhhhhhc-cccccCCCceechHHHHHHHHHcCCcccCcccccHHHHHHHHHH-HHhhcccccc
Q 001145 376 PALRLSYSHLPSHLKCCFT-FCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDIANDYFN-DLTWMSFFQD 448 (1141)
Q Consensus 376 ~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~~~-~L~~~~ll~~ 448 (1141)
..+...|..|+...+..+. ....|+.+ .+..+.+.... .. ..+.++..++ .|++.+|++.
T Consensus 248 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~------~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 248 DMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE------ERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC------CcchHHHHhhHHHHHcCCccc
Confidence 4456677788776666553 55556655 35554443222 11 1123444444 7888999863
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=1.3e-08 Score=131.47 Aligned_cols=267 Identities=15% Similarity=0.156 Sum_probs=162.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch-hH------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF-NS------ 233 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~------ 233 (1141)
..+|-|++-.+.+ ... ...+++.|+|++|.||||++.++... ++.++|++....- +.
T Consensus 14 ~~~~~R~rl~~~l----~~~------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 14 HNTVVRERLLAKL----SGA------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred cccCcchHHHHHH----hcc------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 3456666544444 322 24579999999999999999998852 2258999875211 10
Q ss_pred ------------------------------HHHHH---h-c-CcceeeeecCCCCCChHHHH-HHHHhccCCCCCcEEEE
Q 001145 234 ------------------------------QLRRL---L-R-GRRYLLVLDDVWNEDHEEWD-KLRVSLSDGAEGSRVIV 277 (1141)
Q Consensus 234 ------------------------------~l~~~---l-~-~k~~LlvlDdvw~~~~~~~~-~l~~~l~~~~~gs~ilv 277 (1141)
.+... + . +.+++|||||+..-+..... .+...+.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 01111 1 1 67899999999654434434 33333444456678889
Q ss_pred EcCchH---HHHhhCCCCceeCC----CCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhccc
Q 001145 278 TTRSAK---VATIVGTIPPYYLK----GLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFK 350 (1141)
Q Consensus 278 Ttr~~~---v~~~~~~~~~~~l~----~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 350 (1141)
|||... ....-......++. +|+.+|+.++|...... +.-.+...+|.+.|+|.|+++..++..++..
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 999842 11111122245555 99999999999876422 1223456889999999999999888776543
Q ss_pred CChhhHHHhhccccccccc-CccchhHHHH-hhccCCcchhhhhhccccccCCCceechHHHHHHHHHcCCcccCccccc
Q 001145 351 REEGDWLYVQESDLWNACE-GENRILPALR-LSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKA 428 (1141)
Q Consensus 351 ~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~ 428 (1141)
...... ..+.... ....+...+. -.++.||+..+..+...|+++. ++.+- . ..+.. .
T Consensus 233 ~~~~~~------~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l-~-----~~l~~-~----- 291 (903)
T PRK04841 233 NSSLHD------SARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDAL-I-----VRVTG-E----- 291 (903)
T ss_pred CCchhh------hhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHH-H-----HHHcC-C-----
Confidence 211000 0111111 1223555443 3488999999999999999873 34322 1 11111 1
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCeecccchhHHHHHHHHhh
Q 001145 429 LEDIANDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDLAQSVV 474 (1141)
Q Consensus 429 ~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 474 (1141)
+.+...+++|..++++.... +.++. .|+.|++++++.....
T Consensus 292 --~~~~~~L~~l~~~~l~~~~~-~~~~~--~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 --ENGQMRLEELERQGLFIQRM-DDSGE--WFRYHPLFASFLRHRC 332 (903)
T ss_pred --CcHHHHHHHHHHCCCeeEee-cCCCC--EEehhHHHHHHHHHHH
Confidence 12467888999999875322 11222 3567999999987654
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=3.1e-09 Score=117.36 Aligned_cols=258 Identities=17% Similarity=0.118 Sum_probs=141.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-chhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-DFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~l~~~l 239 (1141)
.+|||+++.++++..++.... ........+.++|++|+|||+||+.+++... ..+. .+..+. .....+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~--~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~~---~~~~~~~~~~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAK--MRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNLK---ITSGPALEKPGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHH--hcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEE---EeccchhcCchhHHHHH
Confidence 469999999999998887431 1112345688999999999999999998432 2221 111110 1111222222
Q ss_pred --cCcceeeeecCCCCCChHHHHHHHHhccC-------------------CCCCcEEEEEcCchHHHHhhC--CCCceeC
Q 001145 240 --RGRRYLLVLDDVWNEDHEEWDKLRVSLSD-------------------GAEGSRVIVTTRSAKVATIVG--TIPPYYL 296 (1141)
Q Consensus 240 --~~k~~LlvlDdvw~~~~~~~~~l~~~l~~-------------------~~~gs~ilvTtr~~~v~~~~~--~~~~~~l 296 (1141)
-+...++++|++..-.....+.+...+.. ..+.+-|..||+...+...+. ....+.+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l 156 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRL 156 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEe
Confidence 23557899999854333333333322211 112344556677644433211 1236789
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhhcccccccc-cCccchh
Q 001145 297 KGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQESDLWNAC-EGENRIL 375 (1141)
Q Consensus 297 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~-~~~~~~~ 375 (1141)
.+++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |............ ..-....
T Consensus 157 ~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 157 EFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred CCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHHHHHH
Confidence 999999999999987743221 2223567889999999997665554432 1111000000000 0001123
Q ss_pred HHHHhhccCCcchhhhhhc-cccccCCCceechHHHHHHHHHcCCcccCcccccHHHHHHHHHH-HHhhcccccc
Q 001145 376 PALRLSYSHLPSHLKCCFT-FCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDIANDYFN-DLTWMSFFQD 448 (1141)
Q Consensus 376 ~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~~~-~L~~~~ll~~ 448 (1141)
..+...|..++.+.+..+. ....++.+ .+..+.+.... | .....++..++ .|++.+++..
T Consensus 227 ~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 227 EMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCccc
Confidence 3356677888887666554 44555433 33333322221 1 11234556667 5999999963
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-10 Score=121.96 Aligned_cols=204 Identities=18% Similarity=0.132 Sum_probs=103.9
Q ss_pred CCCCccEEEEecCCCccccc--cccCCCCccCeeecccccccccc--cccccCCCCCCEEeEccCCCCccccc-cCCCCC
Q 001145 895 NNPCLTSLTISSCPNLRSIS--SKLGCLVALKSLTIRWCQELIAL--PQEIQNLSLLESLEISECHSLTVLPE-GIEGLT 969 (1141)
Q Consensus 895 ~~~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~l--~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l~ 969 (1141)
++.+|+.+.|.++. ....+ .....|++++.|+|+.|-+...- -.....||+|+.|+|+.|....-... .-..++
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34555555555543 22222 12345666666666665544321 12345566666666666654322111 112455
Q ss_pred CcCEEEEccCCCCC-CcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccc-cccCCCCCCcCeEe
Q 001145 970 SLRSLSIENCENLA-YIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASL-PDELQHVTTLQSLE 1047 (1141)
Q Consensus 970 ~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~ 1047 (1141)
+|+.|.|+.|...- .+...+..+|+|+.|++.+|............++.|++|+|++|+++..- ....+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 66666666666542 22223445666666666666433233333445566666666666665432 12345666666666
Q ss_pred eccCCCCc-ccCcC-----CCCCCCcCEEeeccCCCcc--ccCCCCCCCCCcceEeccCCc
Q 001145 1048 IHSCPAFK-DLPEW-----IGNLSSLTSLTISDCHTII--SLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1048 l~~n~~~~-~lp~~-----l~~l~~L~~L~l~~n~~~~--~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
++.|.+.. ..|++ ...+++|+.|++..|++.. ++ ..+..+++|+.|.+.+++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-NHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccccccc-chhhccchhhhhhccccc
Confidence 66665433 12332 2456667777776666522 11 123445556666655543
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.86 E-value=1.1e-10 Score=122.19 Aligned_cols=234 Identities=19% Similarity=0.265 Sum_probs=141.5
Q ss_pred hcCCCCccEEEEecCCCccc--cccccCCCCccCeeeccccccccc--ccccccCCCCCCEEeEccCCCCcccc--ccCC
Q 001145 893 LENNPCLTSLTISSCPNLRS--ISSKLGCLVALKSLTIRWCQELIA--LPQEIQNLSLLESLEISECHSLTVLP--EGIE 966 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~--l~~~l~~l~~L~~L~Ls~~~~l~~~~--~~~~ 966 (1141)
-..+++|++|++++|+.++. +-....++..++.+.+.+|...+. +-..-..++-+..+++..|..++... ..-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 34567777777777765543 112244555666666666654331 11112334556666666775554332 1223
Q ss_pred CCCCcCEEEEccCCCCCCccc--ccCCCCCccEEeecCCCCCccc--CcCccccCCcceEEecCCCCccc--ccccCCCC
Q 001145 967 GLTSLRSLSIENCENLAYIPR--GLGHLIALEHLTIMYCPSLAFL--PENFRNLTMLKSLCILSCPELAS--LPDELQHV 1040 (1141)
Q Consensus 967 ~l~~L~~L~L~~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l 1040 (1141)
++..|+.|..++|......+- --.+.++|+.|.+..|+..... ...-.+++.|+.+++..+..... +-.--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 466777777777766543321 2245677888888777753321 11234567788887777755432 22223477
Q ss_pred CCcCeEeeccCCCCccc-----CcCCCCCCCcCEEeeccCCCccc-cCCCCCCCCCcceEeccCCcchHHhhccCCCCCc
Q 001145 1041 TTLQSLEIHSCPAFKDL-----PEWIGNLSSLTSLTISDCHTIIS-LPANLQHLTTLQHLSIRECPRLESRCKKYVGEDW 1114 (1141)
Q Consensus 1041 ~~L~~L~l~~n~~~~~l-----p~~l~~l~~L~~L~l~~n~~~~~-lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~ 1114 (1141)
+.|+.|.+++|..++.. ...-..+..|+.|.+++|+.+.. .-+.+..+++|+.+++.+|...++..-+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------ 445 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------ 445 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------
Confidence 88999999988766543 23334577899999999998754 3445677899999999999766543221
Q ss_pred cceeccceeeeCCccCCC
Q 001145 1115 LKVAHIPHTYIGSQLNPD 1132 (1141)
Q Consensus 1115 ~~i~~i~~~~~~~~~~~~ 1132 (1141)
+-..|.|++++...+-|.
T Consensus 446 ~~~~~lp~i~v~a~~a~~ 463 (483)
T KOG4341|consen 446 RFATHLPNIKVHAYFAPV 463 (483)
T ss_pred HHHhhCccceehhhccCC
Confidence 223578888887655443
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.85 E-value=6e-09 Score=110.73 Aligned_cols=169 Identities=24% Similarity=0.269 Sum_probs=91.4
Q ss_pred cccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc------------
Q 001145 163 VVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED------------ 230 (1141)
Q Consensus 163 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~------------ 230 (1141)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++++.+...- ..+ ..+|+.....
T Consensus 1 F~gR~~el~~l~~~l~~~-------~~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~~-~~~y~~~~~~~~~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-------PSQHILLYGPRGSGKTSLLKEFINELKE-KGY-KVVYIDFLEESNESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-------cCcEEEEEcCCcCCHHHHHHHHHHHhhh-cCC-cEEEEecccchhhhHHHHHHHH
Confidence 689999999999998764 2358899999999999999999874311 111 1222211100
Q ss_pred ------------------------------hhH---HHHHHh--cCcceeeeecCCCCCC------hHHHHHHHHhccC-
Q 001145 231 ------------------------------FNS---QLRRLL--RGRRYLLVLDDVWNED------HEEWDKLRVSLSD- 268 (1141)
Q Consensus 231 ------------------------------~~~---~l~~~l--~~k~~LlvlDdvw~~~------~~~~~~l~~~l~~- 268 (1141)
... .+.+.+ .+++++||+||+..-. ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 001 112222 2346999999984322 1222233333332
Q ss_pred --CCCCcEEEEEcCchHHHHh--------hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh
Q 001145 269 --GAEGSRVIVTTRSAKVATI--------VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 269 --~~~gs~ilvTtr~~~v~~~--------~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 338 (1141)
..+.+ +++++........ .+....+.+++++.+++++++....-.. ..-+.-.+..++|...+||.|.
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HH
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHH
Confidence 33334 4455444433322 2223358999999999999999864322 1111234456899999999998
Q ss_pred HHHH
Q 001145 339 AAKA 342 (1141)
Q Consensus 339 ai~~ 342 (1141)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.80 E-value=2.8e-07 Score=106.01 Aligned_cols=286 Identities=17% Similarity=0.129 Sum_probs=148.8
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch-------
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF------- 231 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------- 231 (1141)
.++.++||++++++|...+.+.-. +.....+.|+|++|+|||++++.++++.......-..+++.+....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~---~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR---GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 446799999999999999865311 1133467899999999999999999853322211224444432210
Q ss_pred ------------------hH---HHHHHhc--CcceeeeecCCCCCC----hHHHHHHHHhccCCCCCcE--EEEEcCch
Q 001145 232 ------------------NS---QLRRLLR--GRRYLLVLDDVWNED----HEEWDKLRVSLSDGAEGSR--VIVTTRSA 282 (1141)
Q Consensus 232 ------------------~~---~l~~~l~--~k~~LlvlDdvw~~~----~~~~~~l~~~l~~~~~gs~--ilvTtr~~ 282 (1141)
.. .+.+.+. +++.+||+|+++.-. .+.+..+...+.. ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 01 2233332 456899999996421 1233333332222 22333 55555543
Q ss_pred HHHHhh-------CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhh----cCCchhHHHHHhhhh--cc
Q 001145 283 KVATIV-------GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKK----CGGIPLAAKALGSLM--RF 349 (1141)
Q Consensus 283 ~v~~~~-------~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~----~~g~Plai~~~~~~l--~~ 349 (1141)
.+.... -....+.+.+++.++..+++..++-.......-..+..+.|++. .|..+.|+.++-.+. +.
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 332211 11236789999999999999877522110111112233444444 455677776654322 11
Q ss_pred --c---CChhhHHHhhcccccccccCccchhHHHHhhccCCcchhhhhhccccccCC--CceechHHHHHH--HHHcCCc
Q 001145 350 --K---REEGDWLYVQESDLWNACEGENRILPALRLSYSHLPSHLKCCFTFCSVFPK--NFVIKKDNLTHL--WIAEGLI 420 (1141)
Q Consensus 350 --~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~li~~--W~aeg~i 420 (1141)
. -+.+....+.+.. -.....-.+..||.+.|..+..++..-+ ...+...++... .+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 1223333222211 0122344678999988776654432211 133555555432 2332211
Q ss_pred ccCcccccHHHHHHHHHHHHhhccccccccC--CCCCCeecccc
Q 001145 421 RSKDERKALEDIANDYFNDLTWMSFFQDVNK--DSDGNVLDCKM 462 (1141)
Q Consensus 421 ~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~m 462 (1141)
... .+ ......|+.+|...+++..... +..|+.+.++.
T Consensus 334 ~~~---~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~ 373 (394)
T PRK00411 334 YEP---RT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISL 373 (394)
T ss_pred CCc---Cc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEe
Confidence 000 11 2334569999999999986532 22344443333
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.4e-09 Score=114.68 Aligned_cols=207 Identities=17% Similarity=0.091 Sum_probs=139.6
Q ss_pred hhcCCCCccEEEEecCCCcc--ccccccCCCCccCeeecccccccccccc-cccCCCCCCEEeEccCCCCcccc-ccCCC
Q 001145 892 LLENNPCLTSLTISSCPNLR--SISSKLGCLVALKSLTIRWCQELIALPQ-EIQNLSLLESLEISECHSLTVLP-EGIEG 967 (1141)
Q Consensus 892 ~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~Ls~~~~l~~~~-~~~~~ 967 (1141)
....|++++.|+|+.|-... .+......+|+|+.|+++.|.+...... .-..+++|+.|.|+.|.+...-. .....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 46678999999999874222 2233357889999999999886543221 12367899999999998653322 24457
Q ss_pred CCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCccc-CcCccccCCcceEEecCCCCcc-ccccc-----CCCC
Q 001145 968 LTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFL-PENFRNLTMLKSLCILSCPELA-SLPDE-----LQHV 1040 (1141)
Q Consensus 968 l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~-~~~~~-----l~~l 1040 (1141)
+|+|+.|++..|.....-.....-+..|++|+|++|++.... -...+.++.|..|.++.|.+.. ..|+. ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 899999999998644333334556778999999999887542 2346778899999999988754 22333 4567
Q ss_pred CCcCeEeeccCCCCc--ccCcCCCCCCCcCEEeeccCCCccccC----CCCCCCCCcceEeccCC
Q 001145 1041 TTLQSLEIHSCPAFK--DLPEWIGNLSSLTSLTISDCHTIISLP----ANLQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1041 ~~L~~L~l~~n~~~~--~lp~~l~~l~~L~~L~l~~n~~~~~lp----~~~~~l~~L~~L~l~~c 1099 (1141)
++|+.|++..|++.+ .+ ..+..+++|+.|.+..|++...-- ..+...++|..|+=..|
T Consensus 301 ~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di 364 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSL-NHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDI 364 (505)
T ss_pred ccceeeecccCcccccccc-chhhccchhhhhhcccccccccccceeEEeeeehhhhhhhccccc
Confidence 899999999998632 22 335667888888887777654321 12344555666554444
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.76 E-value=3.3e-08 Score=104.30 Aligned_cols=169 Identities=22% Similarity=0.303 Sum_probs=106.6
Q ss_pred ccccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC-cchhHHH
Q 001145 157 FVIESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN-EDFNSQL 235 (1141)
Q Consensus 157 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~l 235 (1141)
++.+.+++|-...+.++++ .. .+.-+-+||++|+||||||+.+.. .....|...-=+..+ .+....+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---~~-------~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---AG-------HLHSMILWGPPGTGKTTLARLIAG--TTNAAFEALSAVTSGVKDLREII 93 (436)
T ss_pred hcChHhhhCCCchHHHHHh---cC-------CCceeEEECCCCCCHHHHHHHHHH--hhCCceEEeccccccHHHHHHHH
Confidence 4455666776666555543 22 566788999999999999999987 444455422111111 2222222
Q ss_pred HH----HhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE--EcCchHHH---HhhCCCCceeCCCCCHHHHHH
Q 001145 236 RR----LLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV--TTRSAKVA---TIVGTIPPYYLKGLSHDDCWT 306 (1141)
Q Consensus 236 ~~----~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv--Ttr~~~v~---~~~~~~~~~~l~~l~~~~~~~ 306 (1141)
.+ ...++|.++++|.|+.-+..+.+.+. |...+|.-|+| ||.++... ...+...++.+++|+.+|-.+
T Consensus 94 e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~ 170 (436)
T COG2256 94 EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKK 170 (436)
T ss_pred HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHH
Confidence 22 23588999999999887777776664 44456777777 56554322 223556689999999999999
Q ss_pred HHhhcccCCCCCC----cCcc-hhhHHHHhhcCCchhHH
Q 001145 307 LFKQRAFAPGEEY----LNFL-PVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 307 lf~~~~~~~~~~~----~~~~-~~~~~i~~~~~g~Plai 340 (1141)
++.+.+......- ..+. +.-.-++..++|---++
T Consensus 171 ~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 171 LLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 9988432222211 1122 35566888888876543
No 35
>PF05729 NACHT: NACHT domain
Probab=98.73 E-value=4.8e-08 Score=97.30 Aligned_cols=123 Identities=21% Similarity=0.262 Sum_probs=80.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccc----cceEEEEEeCcchhH-------------------H----HHH-HhcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKS----FELKIWVCVNEDFNS-------------------Q----LRR-LLRG 241 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~-------------------~----l~~-~l~~ 241 (1141)
+++.|+|.+|+||||+++.++.+-..... +...+|+........ . +.. ..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 47899999999999999999874322222 455666655422111 1 111 2257
Q ss_pred cceeeeecCCCCCCh--H-----HHHHHHHh-ccC-CCCCcEEEEEcCchHH---HHhhCCCCceeCCCCCHHHHHHHHh
Q 001145 242 RRYLLVLDDVWNEDH--E-----EWDKLRVS-LSD-GAEGSRVIVTTRSAKV---ATIVGTIPPYYLKGLSHDDCWTLFK 309 (1141)
Q Consensus 242 k~~LlvlDdvw~~~~--~-----~~~~l~~~-l~~-~~~gs~ilvTtr~~~v---~~~~~~~~~~~l~~l~~~~~~~lf~ 309 (1141)
+++++|+|++.+-.. . .+..+... ++. ..++.+++||+|.... .........+++.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 899999999844221 1 23333333 332 2578999999999665 3334444579999999999999997
Q ss_pred hcc
Q 001145 310 QRA 312 (1141)
Q Consensus 310 ~~~ 312 (1141)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 763
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=5.9e-10 Score=121.13 Aligned_cols=191 Identities=25% Similarity=0.372 Sum_probs=142.4
Q ss_pred ccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEcc
Q 001145 899 LTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIEN 978 (1141)
Q Consensus 899 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~ 978 (1141)
-...+++.|. ...+|..+..+..|+.|.+..|. ...+|..+.++..|++|+|+.|+ +..+|..+..++ |+.|-+++
T Consensus 77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec
Confidence 3445666653 56777777788888888888877 45677788889999999999988 445677666555 88888887
Q ss_pred CCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccC
Q 001145 979 CENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLP 1058 (1141)
Q Consensus 979 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp 1058 (1141)
+.++.+|..++..+.|..|+.+.|.+. .+|..+.++.+|+.|.+..|++. .+|+.+..+ .|..||++.|+ +..+|
T Consensus 153 -Nkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk-is~iP 227 (722)
T KOG0532|consen 153 -NKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK-ISYLP 227 (722)
T ss_pred -CccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc-eeecc
Confidence 566678888888889999999988876 56777888889999999988874 556666655 48889998766 55788
Q ss_pred cCCCCCCCcCEEeeccCCCccccCCCC---CCCCCcceEeccCC
Q 001145 1059 EWIGNLSSLTSLTISDCHTIISLPANL---QHLTTLQHLSIREC 1099 (1141)
Q Consensus 1059 ~~l~~l~~L~~L~l~~n~~~~~lp~~~---~~l~~L~~L~l~~c 1099 (1141)
-+|.+|..|++|.|.+|++..- |..+ +...--++|++..|
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 8899999999999998887532 3221 12233566777666
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=1.5e-07 Score=98.14 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=96.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc--chhHHHHHHhcCcceeeeecCCCCCC-hHHHHH-HHHh
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE--DFNSQLRRLLRGRRYLLVLDDVWNED-HEEWDK-LRVS 265 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~l~~~l~~k~~LlvlDdvw~~~-~~~~~~-l~~~ 265 (1141)
+.+.|+|++|+|||+||+++++. .......+.|+.+.. .+...+.+.+. +.-++|+||+|... ...|+. +...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l 116 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDL 116 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHH
Confidence 46899999999999999999984 222233456777642 22222222332 33589999998632 345653 3333
Q ss_pred ccCC-CCCcEEE-EEcCc---------hHHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcC
Q 001145 266 LSDG-AEGSRVI-VTTRS---------AKVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCG 334 (1141)
Q Consensus 266 l~~~-~~gs~il-vTtr~---------~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~ 334 (1141)
+... ..|..++ +|+.. +.+...+.....++++++++++.++++++.++...- .--.++..-|++++.
T Consensus 117 ~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~ 194 (229)
T PRK06893 117 FNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI--ELSDEVANFLLKRLD 194 (229)
T ss_pred HHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcc
Confidence 3322 2355554 45543 356666666778999999999999999998864321 223456778888888
Q ss_pred CchhHHHHHh
Q 001145 335 GIPLAAKALG 344 (1141)
Q Consensus 335 g~Plai~~~~ 344 (1141)
|..-++..+-
T Consensus 195 ~d~r~l~~~l 204 (229)
T PRK06893 195 RDMHTLFDAL 204 (229)
T ss_pred CCHHHHHHHH
Confidence 8776555443
No 38
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.70 E-value=4.7e-07 Score=98.19 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=97.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-chh-----------------------HHHHH-----Hh
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-DFN-----------------------SQLRR-----LL 239 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~-----------------------~~l~~-----~l 239 (1141)
..++.|+|++|+||||+++.+++..... .+ ..+|+.... +.. ..+.+ ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3488999999999999999999854321 11 123332211 000 01222 22
Q ss_pred cCcceeeeecCCCCCChHHHHHHHHhccCC---CCCcEEEEEcCchHHHHhhC----------CCCceeCCCCCHHHHHH
Q 001145 240 RGRRYLLVLDDVWNEDHEEWDKLRVSLSDG---AEGSRVIVTTRSAKVATIVG----------TIPPYYLKGLSHDDCWT 306 (1141)
Q Consensus 240 ~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~---~~gs~ilvTtr~~~v~~~~~----------~~~~~~l~~l~~~~~~~ 306 (1141)
.++++++|+||+|.-+...++.+....... .....|++|.... ....+. ....+.+.+++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 678899999999887766777665432211 1223455655543 221111 12357899999999999
Q ss_pred HHhhcccCCCC--CCcCcchhhHHHHhhcCCchhHHHHHhhhh
Q 001145 307 LFKQRAFAPGE--EYLNFLPVGKEIVKKCGGIPLAAKALGSLM 347 (1141)
Q Consensus 307 lf~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 347 (1141)
++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99876532221 112234678999999999999999988765
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=3.6e-10 Score=118.49 Aligned_cols=155 Identities=20% Similarity=0.270 Sum_probs=85.5
Q ss_pred CCCCCCEEeEccCCCCccccc--cCCCCCCcCEEEEccCCCCCCcc-ccc-CCCCCccEEeecCCCCCcc--cCcCcccc
Q 001145 943 NLSLLESLEISECHSLTVLPE--GIEGLTSLRSLSIENCENLAYIP-RGL-GHLIALEHLTIMYCPSLAF--LPENFRNL 1016 (1141)
Q Consensus 943 ~l~~L~~L~Ls~~~~l~~~~~--~~~~l~~L~~L~L~~~~~l~~l~-~~~-~~l~~L~~L~l~~~~~~~~--~~~~~~~l 1016 (1141)
.+..|+.|+.++|...+..+- -..+.++|+.|.+++|......- ..+ .+++.|+.+++..|..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345566666666654433221 22345666666666665433221 011 2456666666666654322 22223456
Q ss_pred CCcceEEecCCCCcccc-----cccCCCCCCcCeEeeccCCCCcc-cCcCCCCCCCcCEEeeccCCCccccC--CCCCCC
Q 001145 1017 TMLKSLCILSCPELASL-----PDELQHVTTLQSLEIHSCPAFKD-LPEWIGNLSSLTSLTISDCHTIISLP--ANLQHL 1088 (1141)
Q Consensus 1017 ~~L~~L~L~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~~~~~-lp~~l~~l~~L~~L~l~~n~~~~~lp--~~~~~l 1088 (1141)
+.|++|.+++|...+.. ...-.++..|+.+.+++|+.+.. .-+.+..+++|+.+++.+|.....-+ ..-+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 66777777766554332 22223456788888888886653 22455677888888888887654322 223556
Q ss_pred CCcceEecc
Q 001145 1089 TTLQHLSIR 1097 (1141)
Q Consensus 1089 ~~L~~L~l~ 1097 (1141)
|++++..+.
T Consensus 452 p~i~v~a~~ 460 (483)
T KOG4341|consen 452 PNIKVHAYF 460 (483)
T ss_pred ccceehhhc
Confidence 666655443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=1e-09 Score=119.35 Aligned_cols=114 Identities=30% Similarity=0.519 Sum_probs=96.3
Q ss_pred cCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccC
Q 001145 525 SKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELP 604 (1141)
Q Consensus 525 ~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 604 (1141)
+.|.+..+ +..++.|-.|..|.|..|.+..+|..+++|..|.||||+.|++..+|..++.|+ |+.|-+++|+ ++.+|
T Consensus 83 srNR~~el-p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp 159 (722)
T KOG0532|consen 83 SRNRFSEL-PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLP 159 (722)
T ss_pred cccccccC-chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCC
Confidence 44444433 444778888999999999999999999999999999999999999999999885 8999999865 89999
Q ss_pred ccccCCCCCcEEEecCcccccccCcccCCCCCCCccCc
Q 001145 605 KRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPV 642 (1141)
Q Consensus 605 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 642 (1141)
.+++.+..|.+|+.+.| .+..+|..++.+.+|+.|.+
T Consensus 160 ~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred cccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHH
Confidence 99999999999999887 67788888888888887744
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=1.6e-07 Score=107.33 Aligned_cols=169 Identities=22% Similarity=0.272 Sum_probs=103.9
Q ss_pred CccccchHHHHH---HHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----hhH
Q 001145 161 SEVVGREEDKEA---MIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----FNS 233 (1141)
Q Consensus 161 ~~~vgr~~~~~~---l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----~~~ 233 (1141)
+++||++..+.. +..++... ....+.++|++|+||||+|+.+++.. ...|. .+..... ...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~~---~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-------RLSSMILWGPPGTGKTTLARIIAGAT--DAPFE---ALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-------CCceEEEECCCCCCHHHHHHHHHHHh--CCCEE---EEecccccHHHHHH
Confidence 357777766554 66666543 34578889999999999999998742 23332 1222111 111
Q ss_pred HHHHH----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE--EcCchH--HH-HhhCCCCceeCCCCCHHHH
Q 001145 234 QLRRL----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV--TTRSAK--VA-TIVGTIPPYYLKGLSHDDC 304 (1141)
Q Consensus 234 ~l~~~----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv--Ttr~~~--v~-~~~~~~~~~~l~~l~~~~~ 304 (1141)
.+... ..+++.++++|++|.-....++.+...+.. |..++| ||.+.. +. ........+.+.+++.++.
T Consensus 80 ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i 156 (413)
T PRK13342 80 VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDI 156 (413)
T ss_pred HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHH
Confidence 22211 245788999999987666667777666543 445555 334322 11 1122335789999999999
Q ss_pred HHHHhhcccCCCCCC-cCcchhhHHHHhhcCCchhHHHHHh
Q 001145 305 WTLFKQRAFAPGEEY-LNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 305 ~~lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
+.++.+.+....... .-..+....|++.|+|.+..+..+.
T Consensus 157 ~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 157 EQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 999988653211111 2233566789999999997665443
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.60 E-value=4.3e-07 Score=89.76 Aligned_cols=175 Identities=21% Similarity=0.234 Sum_probs=99.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch--hHHHHHH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--NSQLRRL 238 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~l~~~ 238 (1141)
.+|||.+.-++.+.-++... ...++.+.-+.+||++|+||||||+.+.+ .....|. +.+.. .. ...+...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa--~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~k~~dl~~i 95 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAA--KKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIEKAGDLAAI 95 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHH--HCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C--SCHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHH--HhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhhhHHHHHHH
Confidence 57899998888765555432 11123567889999999999999999998 3444443 22221 11 1123332
Q ss_pred hc--CcceeeeecCCCCCChHHHHHHHHhccCCC--------CCc-----------EEEEEcCchHHHHhhCCCC--cee
Q 001145 239 LR--GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA--------EGS-----------RVIVTTRSAKVATIVGTIP--PYY 295 (1141)
Q Consensus 239 l~--~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~--------~gs-----------~ilvTtr~~~v~~~~~~~~--~~~ 295 (1141)
+. +++-++.+|+++.-.....+.+..+..++. ++. -|=.|||...+...+..-. ..+
T Consensus 96 l~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~ 175 (233)
T PF05496_consen 96 LTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLR 175 (233)
T ss_dssp HHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE
T ss_pred HHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecc
Confidence 21 355678889998877777777777766532 111 2334778755544333222 457
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhh
Q 001145 296 LKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGS 345 (1141)
Q Consensus 296 l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 345 (1141)
++..+.+|-.++..+.+-.-. -+-..+.+.+|++++.|-|--+.-+-+
T Consensus 176 l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 176 LEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp ----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 999999999999987663222 223346789999999999975544433
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=4.8e-08 Score=94.88 Aligned_cols=128 Identities=30% Similarity=0.332 Sum_probs=54.4
Q ss_pred cCCCCcEEeccccCCCCCCCCccccC-CCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhh-hcCCCCc
Q 001145 513 EAKKLRTLNLLFSKGDLGEAPPKLFS-SFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESI-CDLVYLQ 590 (1141)
Q Consensus 513 ~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~ 590 (1141)
+..++|.|+| .++.+..+. . +. .+.+|++|+|++|.++.++ .+..+++|++|++++|.|+.+++.+ ..+++|+
T Consensus 17 n~~~~~~L~L--~~n~I~~Ie-~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNL--RGNQISTIE-N-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccc--ccccccccc-c-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 4446788887 566665432 2 43 5789999999999999885 5888999999999999999997766 4699999
Q ss_pred EEecCCCCCCcccC--ccccCCCCCcEEEecCcccccccC----cccCCCCCCCccCceEecc
Q 001145 591 VLNLSDCHDLIELP--KRLASIFQLRHLMIYGCCRLSQFP----DHIGRLIQLQTLPVFIVGT 647 (1141)
Q Consensus 591 ~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~~~~~~~ 647 (1141)
+|++++|. +..+- ..+..+++|++|++.+|+.. ..+ ..+..+++|+.|+...+..
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccH
Confidence 99999986 33322 34678999999999998533 222 2356789999998766544
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=5.1e-08 Score=112.28 Aligned_cols=104 Identities=31% Similarity=0.467 Sum_probs=83.6
Q ss_pred cCCCCcccEEEccCCCCccccccccccc-cCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcE
Q 001145 537 FSSFRYLRTLNLSGSGIKKLHSSISCLI-SLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRH 615 (1141)
Q Consensus 537 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 615 (1141)
...++.++.|++.++.++.+|..++.+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 3455778888888888888888888775 8899999988888888888888899999988876 7778887778888888
Q ss_pred EEecCcccccccCcccCCCCCCCccCc
Q 001145 616 LMIYGCCRLSQFPDHIGRLIQLQTLPV 642 (1141)
Q Consensus 616 L~l~~~~~~~~~p~~i~~l~~L~~L~~ 642 (1141)
|++++| .+..+|..++.+..|++|.+
T Consensus 191 L~ls~N-~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 191 LDLSGN-KISDLPPEIELLSALEELDL 216 (394)
T ss_pred eeccCC-ccccCchhhhhhhhhhhhhh
Confidence 888887 67777776666666666644
No 45
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.54 E-value=3.7e-06 Score=95.73 Aligned_cols=273 Identities=17% Similarity=0.150 Sum_probs=141.5
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-cc----cceEEEEEeCcchh--
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-KS----FELKIWVCVNEDFN-- 232 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~----f~~~~wv~~~~~~~-- 232 (1141)
+..++||++++++|...+...-. +.....+.|+|++|+|||++++.+++..... .. | ..+|+.......
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~---~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~-~~v~in~~~~~~~~ 89 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR---GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRV-VTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCce-EEEEEECCCCCCHH
Confidence 34799999999999999875311 1133578999999999999999998742110 11 2 244555432110
Q ss_pred ----------------------------HHHHHHh--cCcceeeeecCCCCCC---hHHHHHHHHhc-cCCC--CCcEEE
Q 001145 233 ----------------------------SQLRRLL--RGRRYLLVLDDVWNED---HEEWDKLRVSL-SDGA--EGSRVI 276 (1141)
Q Consensus 233 ----------------------------~~l~~~l--~~k~~LlvlDdvw~~~---~~~~~~l~~~l-~~~~--~gs~il 276 (1141)
..+.+.+ .++++++|||+++.-. ......+.... .... ....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 0122223 2457899999995431 11122222110 1111 222344
Q ss_pred EEcCchHHHH----hhC---CCCceeCCCCCHHHHHHHHhhccc---CCCCCCcCcchhhHHHHhhcCCchhHHH-HHhh
Q 001145 277 VTTRSAKVAT----IVG---TIPPYYLKGLSHDDCWTLFKQRAF---APGEEYLNFLPVGKEIVKKCGGIPLAAK-ALGS 345 (1141)
Q Consensus 277 vTtr~~~v~~----~~~---~~~~~~l~~l~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~i~~~~~g~Plai~-~~~~ 345 (1141)
.+|....... ... ....+.+.+.+.++..+++..++- ......++..+...+++....|.|-.+. ++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4444332211 111 123588999999999999988763 1111222223345556777778885433 3222
Q ss_pred hh--c--cc---CChhhHHHhhcccccccccCccchhHHHHhhccCCcchhhhhhcccccc--CCCceechHHHHHHH--
Q 001145 346 LM--R--FK---REEGDWLYVQESDLWNACEGENRILPALRLSYSHLPSHLKCCFTFCSVF--PKNFVIKKDNLTHLW-- 414 (1141)
Q Consensus 346 ~l--~--~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~f--p~~~~i~~~~li~~W-- 414 (1141)
+. + .+ -+.+....+.+.. -.....-+...||.+.|..+..+... ..+..+...++...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 1 11 1122222111110 01223345678888877555444321 133345666666533
Q ss_pred HHcCCcccCcccccHHHHHHHHHHHHhhcccccccc
Q 001145 415 IAEGLIRSKDERKALEDIANDYFNDLTWMSFFQDVN 450 (1141)
Q Consensus 415 ~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 450 (1141)
+++. +.. . ...+.....++.+|...+++....
T Consensus 320 ~~~~-~~~-~--~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCED-IGV-D--PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHh-cCC-C--CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1221 111 0 112355677889999999988643
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.7e-08 Score=100.83 Aligned_cols=181 Identities=18% Similarity=0.120 Sum_probs=107.4
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccc---cccc--------------------cccCCCCCCE
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELI---ALPQ--------------------EIQNLSLLES 949 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~l~~--------------------~l~~l~~L~~ 949 (1141)
+..+.+|..+.++.|.. ..+-.....-|.|.++.+.+..... .+|. .+.....|++
T Consensus 210 l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeeccch-hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 45578888888888863 2222222334567777766544321 0111 1223456777
Q ss_pred EeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCC
Q 001145 950 LEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPE 1029 (1141)
Q Consensus 950 L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 1029 (1141)
||||+|.+.. +.++..-.|.++.|++++|.+... . .+..+++|+.|++++|.+.. ...+-..+-+.+.|.|++|.+
T Consensus 289 lDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 289 LDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred ccccccchhh-hhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhH
Confidence 7777776443 444555677777777777655432 2 36677777777777776542 223333456677777777765
Q ss_pred cccccccCCCCCCcCeEeeccCCCCcc-cCcCCCCCCCcCEEeeccCCCccc
Q 001145 1030 LASLPDELQHVTTLQSLEIHSCPAFKD-LPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1030 ~~~~~~~l~~l~~L~~L~l~~n~~~~~-lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
-+. .++..+.+|..||+++|++-.. --..++++|-|+.|.+.+||+...
T Consensus 365 E~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 365 ETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 221 4566667777777777764321 124567777777777777776543
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.49 E-value=1e-06 Score=92.61 Aligned_cols=167 Identities=22% Similarity=0.174 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH--HHHHHhcCcc
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS--QLRRLLRGRR 243 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~l~~~l~~k~ 243 (1141)
.+..++.+.+++... ....|.|+|++|+|||+||+.+++... ......+++.++.-... .+...+++ .
T Consensus 22 ~~~~~~~l~~~~~~~-------~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~-~ 91 (226)
T TIGR03420 22 NAELLAALRQLAAGK-------GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQADPEVLEGLEQ-A 91 (226)
T ss_pred cHHHHHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHhHHHHHhhccc-C
Confidence 345666666665432 345889999999999999999987422 22233455655432221 22223333 3
Q ss_pred eeeeecCCCCCChH-HH-HHHHHhccC-CCCCcEEEEEcCchH---------HHHhhCCCCceeCCCCCHHHHHHHHhhc
Q 001145 244 YLLVLDDVWNEDHE-EW-DKLRVSLSD-GAEGSRVIVTTRSAK---------VATIVGTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 244 ~LlvlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtr~~~---------v~~~~~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
-++|+||+..-... .| +.+...+.. ...+.++|+||+... +...+.....+++.++++++...++.+.
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 48999999643221 33 334443332 123457889887532 2223333457899999999999998875
Q ss_pred ccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 312 AFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
+-... ..--.+..+.+++.+.|.|..+.-+-
T Consensus 172 ~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 172 AARRG--LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHcC--CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 42111 12233456778888999988766554
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=5.1e-08 Score=94.73 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=0.0
Q ss_pred ccCeeecccccc
Q 001145 922 ALKSLTIRWCQE 933 (1141)
Q Consensus 922 ~L~~L~L~~~~~ 933 (1141)
++++|+|++|.+
T Consensus 20 ~~~~L~L~~n~I 31 (175)
T PF14580_consen 20 KLRELNLRGNQI 31 (175)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 344444444443
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=2.3e-08 Score=99.90 Aligned_cols=129 Identities=17% Similarity=0.109 Sum_probs=71.9
Q ss_pred CccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEee
Q 001145 921 VALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTI 1000 (1141)
Q Consensus 921 ~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 1000 (1141)
..|++|+|++|.+. .+..+..-+|.++.|++|+|.+...- .+..+++|+.|++++|. +..+..+-..+-+.+.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 34555555555532 22333444556666666665544321 24445666666666633 2223223344556666666
Q ss_pred cCCCCCcccCcCccccCCcceEEecCCCCcccc-cccCCCCCCcCeEeeccCCCCc
Q 001145 1001 MYCPSLAFLPENFRNLTMLKSLCILSCPELASL-PDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 1001 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
++|.+.+. .++..+-+|..|++++|++-..- -..++++|.|+.+.|.+|++..
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 66654321 24455566677777777663211 2467889999999999998654
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=3.3e-08 Score=101.88 Aligned_cols=233 Identities=15% Similarity=0.088 Sum_probs=143.0
Q ss_pred cccccceeeeeecCcCCcch---hhhhhhcCCCCccEEEEecCCC---ccccc-------cccCCCCccCeeeccccccc
Q 001145 868 ATNFSTLLTLLIDGFTGQLV---IFERLLENNPCLTSLTISSCPN---LRSIS-------SKLGCLVALKSLTIRWCQEL 934 (1141)
Q Consensus 868 ~~~~~~l~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~---~~~~~-------~~~~~~~~L~~L~L~~~~~~ 934 (1141)
.....+++.+.+++++.... .....+.+.++|+..++++.-. ...+| ..+..+++|++|+||+|-+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34556677777777654432 2334566667777777775321 11222 22456678888888888754
Q ss_pred ccccc----cccCCCCCCEEeEccCCCCcccc-------------ccCCCCCCcCEEEEccCCCCC----CcccccCCCC
Q 001145 935 IALPQ----EIQNLSLLESLEISECHSLTVLP-------------EGIEGLTSLRSLSIENCENLA----YIPRGLGHLI 993 (1141)
Q Consensus 935 ~~l~~----~l~~l~~L~~L~Ls~~~~l~~~~-------------~~~~~l~~L~~L~L~~~~~l~----~l~~~~~~l~ 993 (1141)
...+. .+.++..|++|.|.+|-+...-. .....-+.|+++...+|..-. .+...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 33222 25567788888888876432110 122346678888877765443 2233566778
Q ss_pred CccEEeecCCCCCcc----cCcCccccCCcceEEecCCCCcc----cccccCCCCCCcCeEeeccCCCCccc----CcCC
Q 001145 994 ALEHLTIMYCPSLAF----LPENFRNLTMLKSLCILSCPELA----SLPDELQHVTTLQSLEIHSCPAFKDL----PEWI 1061 (1141)
Q Consensus 994 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~l----p~~l 1061 (1141)
.|+.+.+..|.+... ....+..+++|+.|+|..|.+.. .+...+..+++|++|+++.|.....- -..+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 888888888766422 23346778888888888887753 23455667778888888888754321 1111
Q ss_pred -CCCCCcCEEeeccCCCccc----cCCCCCCCCCcceEeccCCc
Q 001145 1062 -GNLSSLTSLTISDCHTIIS----LPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1062 -~~l~~L~~L~l~~n~~~~~----lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
...|+|+.|.+.+|.+... +-..+...|.|..|++.+|.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 2367888888888877643 22223446788888888884
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=2e-07 Score=112.02 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=90.9
Q ss_pred CcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeec
Q 001145 970 SLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIH 1049 (1141)
Q Consensus 970 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1049 (1141)
.++.|+|++|.....+|..++.+++|+.|++++|.+...+|..+..+++|+.|+|++|.+.+.+|+.+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47778888887777788888888888888888888887888888888888888888888888888888888888888888
Q ss_pred cCCCCcccCcCCCCC-CCcCEEeeccCCCccccC
Q 001145 1050 SCPAFKDLPEWIGNL-SSLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1050 ~n~~~~~lp~~l~~l-~~L~~L~l~~n~~~~~lp 1082 (1141)
+|.+.+.+|..+... .++..+++.+|+.+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888888888776653 466778888877665554
No 52
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.44 E-value=3e-06 Score=98.20 Aligned_cols=262 Identities=19% Similarity=0.199 Sum_probs=163.5
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH------------------
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS------------------ 233 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~------------------ 233 (1141)
++.+.|... .+.+.+.|.-++|.|||||+.+... + ...=..+.|.+..++-+.
T Consensus 26 rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 26 RLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 455555543 3678999999999999999999975 1 122345899988653321
Q ss_pred -------------------HHHHHh-----cCcceeeeecCCCCCChHHHH-HHHHhccCCCCCcEEEEEcCchHHH---
Q 001145 234 -------------------QLRRLL-----RGRRYLLVLDDVWNEDHEEWD-KLRVSLSDGAEGSRVIVTTRSAKVA--- 285 (1141)
Q Consensus 234 -------------------~l~~~l-----~~k~~LlvlDdvw~~~~~~~~-~l~~~l~~~~~gs~ilvTtr~~~v~--- 285 (1141)
.+...+ -.++..+||||..-......+ .+...+....++-.++||||+..-.
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 111111 245789999997544333333 3444455667788999999986322
Q ss_pred HhhCCCCceeC----CCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhhc
Q 001145 286 TIVGTIPPYYL----KGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQE 361 (1141)
Q Consensus 286 ~~~~~~~~~~l----~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~ 361 (1141)
..--....+++ -.++.+|+.++|.... ..+-...-.+.+.+...|=+-|+..++=.++.+.+.+.-...+
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-----~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L- 250 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRG-----SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL- 250 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcC-----CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc-
Confidence 11111112333 3579999999998875 2233344578899999999999999888877433332211111
Q ss_pred ccccccccCccchhHH-HHhhccCCcchhhhhhccccccCCCceechHHHHHHHHHcCCcccCcccccHHHHHHHHHHHH
Q 001145 362 SDLWNACEGENRILPA-LRLSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDIANDYFNDL 440 (1141)
Q Consensus 362 ~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~~~~L 440 (1141)
.....-+... ..--++.||+++|..++-||+++.= .+.|+..- +-++-|...+++|
T Consensus 251 ------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~amLe~L 307 (894)
T COG2909 251 ------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAMLEEL 307 (894)
T ss_pred ------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHHHHHH
Confidence 1111112221 2335689999999999999998752 12333221 1123467789999
Q ss_pred hhccccccccCCCCCCeecccchhHHHHHHHHhh
Q 001145 441 TWMSFFQDVNKDSDGNVLDCKMHDLIHDLAQSVV 474 (1141)
Q Consensus 441 ~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 474 (1141)
.+++++-..-.+ .+. -|+.|.++.||-+.--
T Consensus 308 ~~~gLFl~~Ldd-~~~--WfryH~LFaeFL~~r~ 338 (894)
T COG2909 308 ERRGLFLQRLDD-EGQ--WFRYHHLFAEFLRQRL 338 (894)
T ss_pred HhCCCceeeecC-CCc--eeehhHHHHHHHHhhh
Confidence 999998643322 222 3689999999976543
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=1.2e-07 Score=109.11 Aligned_cols=183 Identities=25% Similarity=0.344 Sum_probs=121.5
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCC-ccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCc
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLV-ALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSL 971 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L 971 (1141)
...++.++.|++.++. +..++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++.. +|......+.|
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcc-cccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhh
Confidence 3444667777777765 455555555553 7888888888744 444557778888888888887443 55444467788
Q ss_pred CEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccC
Q 001145 972 RSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSC 1051 (1141)
Q Consensus 972 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1051 (1141)
+.|++++|.. ..+|...+.+..|++|.+++|+.. ..+..+..+.++..+.+.+|++. .++..+..+++|+.|++++|
T Consensus 189 ~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCcc-ccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence 8888888444 445544455566888888887533 33455666777777777777653 33566677777888888887
Q ss_pred CCCcccCcCCCCCCCcCEEeeccCCCccccCC
Q 001145 1052 PAFKDLPEWIGNLSSLTSLTISDCHTIISLPA 1083 (1141)
Q Consensus 1052 ~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~ 1083 (1141)
.+. .++. +..+.+|+.|+++++.....+|.
T Consensus 266 ~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 266 QIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccc-cccc-ccccCccCEEeccCccccccchh
Confidence 644 4433 77778888888888777655554
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=2.6e-08 Score=102.54 Aligned_cols=228 Identities=17% Similarity=0.145 Sum_probs=156.2
Q ss_pred CCCCCeEEEeccCcchhc------ccccccceeeeeecC-cCCc--------chhhhhhhcCCCCccEEEEecCCCcccc
Q 001145 849 FPSLQHLEFRNCNEMIMK------SATNFSTLLTLLIDG-FTGQ--------LVIFERLLENNPCLTSLTISSCPNLRSI 913 (1141)
Q Consensus 849 l~~L~~L~l~~~~~~~~~------~~~~~~~l~~L~l~~-~~~~--------~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 913 (1141)
..+++.|+++++..-... .+.+-+.|+...+.. +.+. ...+...+..+|+|++|+||+|-.-...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 457889999998743221 223334454444433 2222 2345566778899999999998654333
Q ss_pred ccc----cCCCCccCeeecccccccccc-------------cccccCCCCCCEEeEccCCCCcccc-----ccCCCCCCc
Q 001145 914 SSK----LGCLVALKSLTIRWCQELIAL-------------PQEIQNLSLLESLEISECHSLTVLP-----EGIEGLTSL 971 (1141)
Q Consensus 914 ~~~----~~~~~~L~~L~L~~~~~~~~l-------------~~~l~~l~~L~~L~Ls~~~~l~~~~-----~~~~~l~~L 971 (1141)
+.. +..+..|++|.|.+|.+-..- ......-++|+++....|.. +..+ ..+...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhcccc
Confidence 222 567889999999999854211 11234568999999999874 3322 255667899
Q ss_pred CEEEEccCCCCCC----cccccCCCCCccEEeecCCCCCcc----cCcCccccCCcceEEecCCCCcccc----cccC-C
Q 001145 972 RSLSIENCENLAY----IPRGLGHLIALEHLTIMYCPSLAF----LPENFRNLTMLKSLCILSCPELASL----PDEL-Q 1038 (1141)
Q Consensus 972 ~~L~L~~~~~l~~----l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~l-~ 1038 (1141)
+.+.+..|.+... +...+..+++|+.|++.+|.+... +...+..+++|++|+++.|.+...- ...+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 9999998776532 344678999999999999987643 3445677889999999999876421 1222 2
Q ss_pred CCCCcCeEeeccCCCCcc----cCcCCCCCCCcCEEeeccCCC
Q 001145 1039 HVTTLQSLEIHSCPAFKD----LPEWIGNLSSLTSLTISDCHT 1077 (1141)
Q Consensus 1039 ~l~~L~~L~l~~n~~~~~----lp~~l~~l~~L~~L~l~~n~~ 1077 (1141)
..|+|+.|.+.+|.+... +..++...+.|+.|+|++|.+
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 468999999999987643 334556689999999999987
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=4.2e-07 Score=109.31 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=98.2
Q ss_pred CCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEec
Q 001145 946 LLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCIL 1025 (1141)
Q Consensus 946 ~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 1025 (1141)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.....+|..++.+++|+.|++++|.+...+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999888888888899999999999988888899889999999999999999988899999999999999999
Q ss_pred CCCCcccccccCCCC-CCcCeEeeccCCCCcccC
Q 001145 1026 SCPELASLPDELQHV-TTLQSLEIHSCPAFKDLP 1058 (1141)
Q Consensus 1026 ~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~lp 1058 (1141)
+|.+.+.+|..+... .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999988999887653 467788999887655443
No 56
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=1.2e-06 Score=82.10 Aligned_cols=110 Identities=20% Similarity=0.304 Sum_probs=75.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH---------HHHHHhcCcceeeeecCCCCCChHHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS---------QLRRLLRGRRYLLVLDDVWNEDHEEWD 260 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~---------~l~~~l~~k~~LlvlDdvw~~~~~~~~ 260 (1141)
+++.|.|+.|+||||++++++.+.. .....+++...+.... .+.+....++.++++|++. ....|.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq--~~~~~~ 77 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQ--YLPDWE 77 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhh--hhccHH
Confidence 4899999999999999999987433 2344566665543322 2222233477899999994 446788
Q ss_pred HHHHhccCCCCCcEEEEEcCchHHHHh------hCCCCceeCCCCCHHHH
Q 001145 261 KLRVSLSDGAEGSRVIVTTRSAKVATI------VGTIPPYYLKGLSHDDC 304 (1141)
Q Consensus 261 ~l~~~l~~~~~gs~ilvTtr~~~v~~~------~~~~~~~~l~~l~~~~~ 304 (1141)
.....+.+..+..+|++|+........ .+....+++.||+-.|.
T Consensus 78 ~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 78 DALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 777777665667899999988655532 12223678899887763
No 57
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.37 E-value=5.6e-06 Score=102.14 Aligned_cols=287 Identities=16% Similarity=0.167 Sum_probs=167.2
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC------------c
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN------------E 229 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~------------~ 229 (1141)
.++||+.+.+.|...+..... ..-.++.+.|..|||||+++++|... +...+...+--... +
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~----g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq 74 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK----GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQ 74 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC----CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHH
Confidence 368999999999998886521 23459999999999999999999873 32222211111111 0
Q ss_pred chhH------------------------------------------------------------------HHHHHh-cCc
Q 001145 230 DFNS------------------------------------------------------------------QLRRLL-RGR 242 (1141)
Q Consensus 230 ~~~~------------------------------------------------------------------~l~~~l-~~k 242 (1141)
.+.. .+.... +.+
T Consensus 75 ~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~ 154 (849)
T COG3899 75 AFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEH 154 (849)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccC
Confidence 0000 112222 456
Q ss_pred ceeeeecCCCCCChHHHHHHHHhccCCC------CCcEEEEEcCch--HHHHhhCCCCceeCCCCCHHHHHHHHhhcccC
Q 001145 243 RYLLVLDDVWNEDHEEWDKLRVSLSDGA------EGSRVIVTTRSA--KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFA 314 (1141)
Q Consensus 243 ~~LlvlDdvw~~~~~~~~~l~~~l~~~~------~gs~ilvTtr~~--~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~ 314 (1141)
+.++|+||+...|....+-+........ +..-.+.|.+.. .+...-.....+.+.||+..+...+.......
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 9999999995566655554433332221 112233344432 22222233457999999999999999887632
Q ss_pred CCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhccc------CChhhHHHhhcccccccccCccchhHHHHhhccCCcch
Q 001145 315 PGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFK------REEGDWLYVQESDLWNACEGENRILPALRLSYSHLPSH 388 (1141)
Q Consensus 315 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 388 (1141)
. .....+....|+++..|+|+-+.-+-..+... .+...|..=.. ........++ +...+..-.+.||..
T Consensus 235 ~---~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~-~i~~~~~~~~-vv~~l~~rl~kL~~~ 309 (849)
T COG3899 235 T---KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA-SLGILATTDA-VVEFLAARLQKLPGT 309 (849)
T ss_pred c---ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-hcCCchhhHH-HHHHHHHHHhcCCHH
Confidence 1 23345678999999999999998887777653 33444432111 0111111112 444577778999998
Q ss_pred hhhhhccccccCCCceechHHHHHHHHHcCCcccCcccccHHHHHHHHHHHHhhccccccccC---CCCCCee-cccchh
Q 001145 389 LKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDIANDYFNDLTWMSFFQDVNK---DSDGNVL-DCKMHD 464 (1141)
Q Consensus 389 ~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~---~~~~~~~-~~~mhd 464 (1141)
.+...-.-+++-.. |+.+.|-..|- ......+....+.|....++...+. ....... |-..||
T Consensus 310 t~~Vl~~AA~iG~~--F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 310 TREVLKAAACIGNR--FDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHhCcc--CCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 88888777777644 45555555552 1234555555666655555432211 1111122 336788
Q ss_pred HHHHHHHH
Q 001145 465 LIHDLAQS 472 (1141)
Q Consensus 465 l~~d~~~~ 472 (1141)
.+++.|-.
T Consensus 377 ~vqqaaY~ 384 (849)
T COG3899 377 RVQQAAYN 384 (849)
T ss_pred HHHHHHhc
Confidence 88887643
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.34 E-value=6e-06 Score=92.96 Aligned_cols=172 Identities=18% Similarity=0.172 Sum_probs=105.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc-eEEEEEeCcch--------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-LKIWVCVNEDF-------- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-------- 231 (1141)
+.++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+.... ..+. ..+.+.+++-.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-------NLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhh
Confidence 46889999999998888654 3345789999999999999998763211 1111 12333332110
Q ss_pred -------------------hHHHHHHh---------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-
Q 001145 232 -------------------NSQLRRLL---------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA- 282 (1141)
Q Consensus 232 -------------------~~~l~~~l---------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~- 282 (1141)
...+++.+ .+.+-++|+||+..-....+..+...+......+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 01122211 1345589999996544445556666665545567788777542
Q ss_pred HHHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 283 KVATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 283 ~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
.+...+ .....+.+.+++.++...++.+.+-.... .--.+....+++.++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 222222 22346888999999998888876532221 12345678889999887765543
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=7.5e-06 Score=94.38 Aligned_cols=174 Identities=20% Similarity=0.202 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------ccccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------------TKSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~ 221 (1141)
.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+++.... .+.|.-
T Consensus 15 ddVIGQe~vv~~L~~aI~~g------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 47899999999999988754 12468899999999999999988663211 112222
Q ss_pred EEEEEeCcchh-HHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHH-HhhCC
Q 001145 222 KIWVCVNEDFN-SQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVA-TIVGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~-~~~~~ 290 (1141)
.+.+..+.... ..+++.+ .+++-++|+|++..-....+..+...+.....+.++|++|.+. .+. .....
T Consensus 89 viEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR 168 (702)
T PRK14960 89 LIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 (702)
T ss_pred eEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh
Confidence 34444332111 1233322 3567799999997766677778888887666667777777653 332 22233
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
...+++++++.++..+.+.+.+-.... .........|++.++|.+-.+..
T Consensus 169 Cq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 169 CLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 357999999999998888876633221 22234567899999998754443
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.4e-05 Score=88.20 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=115.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc----ccccccceEEEEEe-CcchhH-H
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE----KVTKSFELKIWVCV-NEDFNS-Q 234 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~-~ 234 (1141)
.+++|.+..++.+...+... .-.+...++|+.|+||||+|+.++... ....|.|...|... +..... .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 36789999899999988654 234578899999999999999987631 22356676666552 222221 2
Q ss_pred HHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHH-Hh-hCCCCceeCCCCCHHHH
Q 001145 235 LRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVA-TI-VGTIPPYYLKGLSHDDC 304 (1141)
Q Consensus 235 l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~-~~-~~~~~~~~l~~l~~~~~ 304 (1141)
+++. ..+++-++|+|++.......|..+...+.....++.+|++|.+.+.. .. ......+.+.++++++.
T Consensus 78 ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 2221 23566678888886666778999999998877889988888654321 11 22234789999999999
Q ss_pred HHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 305 WTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 305 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
...+.+...+ ...+.+..++..++|.|..+...
T Consensus 158 ~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 158 EKFISYKYND------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8877654311 11233667888999988755433
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=7.8e-06 Score=85.38 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=90.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHhc--CcceeeeecCCCCCC-hHHHHHHHHhc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLLR--GRRYLLVLDDVWNED-HEEWDKLRVSL 266 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l~--~k~~LlvlDdvw~~~-~~~~~~l~~~l 266 (1141)
..+.|+|..|+|||+|++++++. ...+...+++++..+-. ..+.+.+. .+.-++|+||+.... ...|....-.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~~-~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l 118 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAAA-GRLRDALEALEGRSLVALDGLESIAGQREDEVALFDF 118 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHhh-hhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHH
Confidence 35999999999999999999874 22333356677654422 22222221 234589999984321 12344322222
Q ss_pred cC--CCCCcEEEEEcCch---------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC
Q 001145 267 SD--GAEGSRVIVTTRSA---------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG 335 (1141)
Q Consensus 267 ~~--~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 335 (1141)
-+ ...|..||+|++.. ++...+.....+++++++.++..+++.+++.... -.--.++..-|++.+.|
T Consensus 119 ~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 119 HNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGER 196 (233)
T ss_pred HHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCC
Confidence 22 12466799999852 2223344456899999999999999998764321 12233566778888887
Q ss_pred chhHH
Q 001145 336 IPLAA 340 (1141)
Q Consensus 336 ~Plai 340 (1141)
..-.+
T Consensus 197 d~r~~ 201 (233)
T PRK08727 197 ELAGL 201 (233)
T ss_pred CHHHH
Confidence 66544
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.1e-05 Score=90.66 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-------------------cccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-------------------KSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 221 (1141)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+..... +.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred hhccChHHHHHHHHHHHHcC------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 46899999999998888754 134578899999999999999997632111 11112
Q ss_pred EEEEEeCc-chhHHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCC
Q 001145 222 KIWVCVNE-DFNSQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~-~~~~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~ 290 (1141)
..++..+. .....+++.+ .+++-++|+|++..-....++.+...+.......++|++|.+ ..+... .+.
T Consensus 90 ~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 90 LIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred eEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 33333221 1111222222 245669999999766666787888777766666677776654 334332 222
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
...+++.+++.++..+.+.+.+-..+ ..-..+.+..|++.++|.|-.+.
T Consensus 170 c~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 170 CLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 35799999999999888877653222 11223456789999999886443
No 63
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.31 E-value=2.2e-05 Score=93.64 Aligned_cols=177 Identities=23% Similarity=0.221 Sum_probs=97.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccccc---ceEEEEEeCcc-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSF---ELKIWVCVNED------- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~------- 230 (1141)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ....|+.+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 36889999998888777533 24479999999999999999998643322221 11223332210
Q ss_pred ------------------------------------------------------hhHHHHHHhcCcceeeeecCCCCCCh
Q 001145 231 ------------------------------------------------------FNSQLRRLLRGRRYLLVLDDVWNEDH 256 (1141)
Q Consensus 231 ------------------------------------------------------~~~~l~~~l~~k~~LlvlDdvw~~~~ 256 (1141)
....+.+.++++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 01133344445555555555554444
Q ss_pred HHHHHHHHhccCCCCCcEEEE--EcCchH-HHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhh
Q 001145 257 EEWDKLRVSLSDGAEGSRVIV--TTRSAK-VATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKK 332 (1141)
Q Consensus 257 ~~~~~l~~~l~~~~~gs~ilv--Ttr~~~-v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~ 332 (1141)
..|+.++..+....+...+++ ||++.. +...+ .....+.+.+++.+|.+.++.+.+-.... .-..++.+.|.+.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v--~ls~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV--HLAAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHC
Confidence 445555544444444444555 566432 11111 12236788999999999999987632111 1112233444444
Q ss_pred cCCchhHHHHHhhh
Q 001145 333 CGGIPLAAKALGSL 346 (1141)
Q Consensus 333 ~~g~Plai~~~~~~ 346 (1141)
+..-+-|+..++.+
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 44334555555443
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=9.3e-06 Score=94.61 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=114.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-------------------cccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-------------------KSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 221 (1141)
.++||.+..++.|..++... +-.+.+.++|..|+||||+|+.+.+..... +.|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 47899999999999988754 124566799999999999998876532111 12333
Q ss_pred EEEEEeCcchhH-HHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-hCC
Q 001145 222 KIWVCVNEDFNS-QLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~~-~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~ 290 (1141)
.+++..+..... .+++.+ .++.-++|||++..-....|..+...+.......++|++|.+. .+... .+.
T Consensus 90 viEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 90 YVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred EEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 455544322211 222222 2455688999998777777888888887666677877777663 33222 222
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKAL 343 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 343 (1141)
-..+.++.++.++..+.+.+.+-.... .-..+....|++.++|..- |+..+
T Consensus 170 Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 170 CLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred eEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 347999999999999988886532221 1233566789999988664 54443
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=6.4e-06 Score=95.20 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc------------------eE
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE------------------LK 222 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~------------------~~ 222 (1141)
.+++|.+..++.|..++... .-.+.+.++|++|+||||+|+.+++.....+.+. .+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 46899999888888888764 1235679999999999999999876432211111 13
Q ss_pred EEEEeCcchhH----HHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcC-chHHHHhh-CCC
Q 001145 223 IWVCVNEDFNS----QLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTR-SAKVATIV-GTI 291 (1141)
Q Consensus 223 ~wv~~~~~~~~----~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr-~~~v~~~~-~~~ 291 (1141)
.++..+..... .+.+.+ .+++-++|+|+++......+..+...+......+.+|++|. ...+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 33333322111 222222 35667999999987777778888888876555556555554 34443322 233
Q ss_pred CceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 292 PPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 292 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
..+++.+++.++....+.+.+-..+. ....+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 47999999999999999887643222 123356788999999988544
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=3.6e-06 Score=82.05 Aligned_cols=111 Identities=23% Similarity=0.206 Sum_probs=70.0
Q ss_pred ccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHH---------
Q 001145 164 VGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQ--------- 234 (1141)
Q Consensus 164 vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--------- 234 (1141)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+++++... ..-..++++...+.....
T Consensus 1 ~~~~~~~~~i~~~~~~~-------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP-------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 47888888888887653 235788999999999999999998432 112335566555433221
Q ss_pred -----HHHHhcCcceeeeecCCCCCChHHHHHHHHhccCC------CCCcEEEEEcCchH
Q 001145 235 -----LRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDG------AEGSRVIVTTRSAK 283 (1141)
Q Consensus 235 -----l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~------~~gs~ilvTtr~~~ 283 (1141)
.......++.++|+||++.-.......+...+... ..+..||+||....
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 11223456789999999753222333333333322 35778888887643
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=98.27 E-value=4.6e-05 Score=89.17 Aligned_cols=237 Identities=21% Similarity=0.154 Sum_probs=133.4
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-HHHHH--
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-SQLRR-- 237 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~l~~-- 237 (1141)
.+++|.++.++++.+|+.... .+...+.+.|+|++|+||||+|+.+++... |+ .+-+..++... ..+.+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~---~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL---KGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHHHHHHH
Confidence 469999999999999987642 112357899999999999999999998432 32 23334443221 11221
Q ss_pred --H-----hc-CcceeeeecCCCCCCh----HHHHHHHHhccCCCCCcEEEEEcCc-hHHHH-hh-CCCCceeCCCCCHH
Q 001145 238 --L-----LR-GRRYLLVLDDVWNEDH----EEWDKLRVSLSDGAEGSRVIVTTRS-AKVAT-IV-GTIPPYYLKGLSHD 302 (1141)
Q Consensus 238 --~-----l~-~k~~LlvlDdvw~~~~----~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~-~~-~~~~~~~l~~l~~~ 302 (1141)
. +. .++.+||+|+++.-.. ..+..+...+.. .+..||+|+.+ ..... .+ .....+.+.+++.+
T Consensus 86 ~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~ 163 (482)
T PRK04195 86 GEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTR 163 (482)
T ss_pred HHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHH
Confidence 1 12 2678999999964321 335556555543 22345555543 22211 11 22347889999999
Q ss_pred HHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccC---ChhhHHHhhcccccccccCccchhHHHH
Q 001145 303 DCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKR---EEGDWLYVQESDLWNACEGENRILPALR 379 (1141)
Q Consensus 303 ~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 379 (1141)
+....+.+.+..... ....++...|++.++|..-.+......+.... +.+.-..+.. ......++.++.
T Consensus 164 ~i~~~L~~i~~~egi--~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~~if~~l~ 235 (482)
T PRK04195 164 SIVPVLKRICRKEGI--ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREESIFDALD 235 (482)
T ss_pred HHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCCCHHHHHH
Confidence 988888876643222 12235678999999998766554333333221 1222111111 112234566655
Q ss_pred hhcc-CCcchhhhhhccccccCCCceechHHHHHHHHHcCCcccC
Q 001145 380 LSYS-HLPSHLKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSK 423 (1141)
Q Consensus 380 ~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~ 423 (1141)
.-+. .-+......+.... ++. +.+-.|+.|.+....
T Consensus 236 ~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 236 AVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred HHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhcccccc
Confidence 4443 22223333222211 122 457789999997753
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.26 E-value=9.5e-06 Score=89.59 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=105.3
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc-eEEEEEeCcchhH-HHHHH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-LKIWVCVNEDFNS-QLRRL 238 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~-~l~~~ 238 (1141)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++... ...|. .++-+..++.... .+++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGIDVVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHHHHHHH
Confidence 46889888888887776543 233467999999999999999987321 11222 1222333332211 22222
Q ss_pred ----h-------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCCCCceeCCCCCHHHHH
Q 001145 239 ----L-------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 239 ----l-------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~~~~~~l~~l~~~~~~ 305 (1141)
. .++.-++++|++..-.......+...+......+++++++.. ..+... ......+++.++++++..
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 1 134679999999766666666676666554556777776644 222111 112247899999999999
Q ss_pred HHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 306 TLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 306 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
..+...+-..+. .-..+....|++.++|..-.+.
T Consensus 165 ~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 165 GRLMKVVEAEKV--PYVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 888877633221 1123467889999998764433
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.6e-06 Score=68.80 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=15.1
Q ss_pred CCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccC
Q 001145 1037 LQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDC 1075 (1141)
Q Consensus 1037 l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n 1075 (1141)
+.++++|+.|++++|.+...-|..|..+++|+.|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333444444444433333222233344444444444443
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2e-05 Score=93.84 Aligned_cols=175 Identities=21% Similarity=0.227 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-------------------cccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-------------------KSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 221 (1141)
.++||.+..++.|.+++... +-.+.+.++|+.|+||||+|+.+++..... +.|..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 47899999999998888754 123466899999999999999998743211 11222
Q ss_pred EEEEEeCcchh-HHHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCC
Q 001145 222 KIWVCVNEDFN-SQLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~ 290 (1141)
.+++....... ..+++. ..+++-++|+|++..-....++.|+..+.......++|++|.+ ..+... ...
T Consensus 90 viEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR 169 (944)
T PRK14949 90 LIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 (944)
T ss_pred EEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh
Confidence 34443331111 112221 2467789999999877778888888888765556666665544 444322 223
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
...|++++++.++..+.+.+.+-... .....+....|++.++|.|--+..+
T Consensus 170 Cq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 170 CLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred heEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 35799999999999998887653211 1122346788999999988644433
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.8e-06 Score=68.59 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=36.1
Q ss_pred CCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 993 IALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 993 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
|+|+.|++++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345666666665554444556666666666666666654444556666666666666664
No 72
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.22 E-value=5.2e-06 Score=85.89 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=101.7
Q ss_pred CccccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 156 SFVIESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 156 ~~~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
.++.+.+++|.+.-+..+ +..+ .+.-+.+||++|+||||||+.+.+..+-.. ..||..|..
T Consensus 139 dyvGQ~hlv~q~gllrs~---ieq~-------~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~ 204 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSL---IEQN-------RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTN 204 (554)
T ss_pred HhcchhhhcCcchHHHHH---HHcC-------CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchH
Confidence 345556666654433333 3332 566788999999999999999998544322 345554421
Q ss_pred -hhHHHH-----HHhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE--EcCchHHH---HhhCCCCceeCCCC
Q 001145 231 -FNSQLR-----RLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV--TTRSAKVA---TIVGTIPPYYLKGL 299 (1141)
Q Consensus 231 -~~~~l~-----~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv--Ttr~~~v~---~~~~~~~~~~l~~l 299 (1141)
....+. ..+.++|.++.+|.|......+.+.+ +|.-.+|.-++| ||.+.... ..+..-.++.++.|
T Consensus 205 dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL 281 (554)
T KOG2028|consen 205 DVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKL 281 (554)
T ss_pred HHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccC
Confidence 222222 23467899999999977665555544 555567887777 66664332 33455568999999
Q ss_pred CHHHHHHHHhhccc--CCCC------CCcC--c-chhhHHHHhhcCCchh
Q 001145 300 SHDDCWTLFKQRAF--APGE------EYLN--F-LPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 300 ~~~~~~~lf~~~~~--~~~~------~~~~--~-~~~~~~i~~~~~g~Pl 338 (1141)
..++-..++.+..- ++.. ..+. + ..+.+-++..|.|-.-
T Consensus 282 ~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 282 PVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred CHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99998888877322 1111 1111 1 1245556777777654
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.6e-05 Score=91.45 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=113.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc------------------------c
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV------------------------T 216 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~------------------------~ 216 (1141)
.++||.+..++.|.+.+... +-.+.+.++|..|+||||+|+.+.+.... .
T Consensus 16 ddVIGQe~vv~~L~~al~~g------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 47899999999999988765 13457789999999999999988653211 0
Q ss_pred cccceEEEEEeCcchhH-HHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchHHHH
Q 001145 217 KSFELKIWVCVNEDFNS-QLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAKVAT 286 (1141)
Q Consensus 217 ~~f~~~~wv~~~~~~~~-~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v~~ 286 (1141)
+.|...+++........ .+++. ..++.-++|+|++..-....++.+...+..-...+++|+ ||....+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 12223444444322111 22222 145667999999977777788888887766555556554 555454442
Q ss_pred hh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 287 IV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 287 ~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
.+ +.-..+.++.++.++..+.+.+.+-.... ....+....|++.++|.|.....+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 22347999999999999888876532211 112234578999999999755443
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.6e-05 Score=89.63 Aligned_cols=172 Identities=19% Similarity=0.234 Sum_probs=112.1
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccc----------------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKS---------------------- 218 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~---------------------- 218 (1141)
.+++|.+..+..+...+... .-.+.+.++|+.|+||||+|+.+++.......
T Consensus 21 ~dliGq~~vv~~L~~ai~~~------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 46899999888888777654 12357889999999999999999764221110
Q ss_pred -cceEEEEEeCcch-hHHHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchHHHHh
Q 001145 219 -FELKIWVCVNEDF-NSQLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAKVATI 287 (1141)
Q Consensus 219 -f~~~~wv~~~~~~-~~~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v~~~ 287 (1141)
...++.+...... -..+++. ..+++-++|+|+++.-....|..+...+......+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0112223222111 1122222 245677999999987777888888888876556666654 5555555443
Q ss_pred h-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 288 V-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 288 ~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
+ .....+++.+++.++....+.+.+-.... ....+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3 23347899999999999999887743221 112345677999999977543
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.9e-05 Score=92.20 Aligned_cols=173 Identities=16% Similarity=0.224 Sum_probs=110.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------ccccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------------TKSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~ 221 (1141)
.++||.+..+..|..++... .-.+.+.++|+.|+||||+|+.+.+.... .+.|..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 47999999999999988764 12457899999999999999988663111 111222
Q ss_pred EEEEEeCcchh-HHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCC
Q 001145 222 KIWVCVNEDFN-SQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~ 290 (1141)
.+.+....... ..+++.+ .+++-++|+|++..-.......+...+......+++|++|.+ ..+... .+.
T Consensus 90 vlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR 169 (709)
T PRK08691 90 LLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 (709)
T ss_pred eEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH
Confidence 23443322221 1333332 356779999999765655667777777655556677766654 322211 122
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
...+.+.+++.++....+.+.+-.... .-.......|++.++|.+.-+.
T Consensus 170 C~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 170 CLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHH
Confidence 246888999999998888876632221 1223467889999999885443
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=1.9e-05 Score=94.87 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=96.9
Q ss_pred CccccchHHHH---HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC----cchhH
Q 001145 161 SEVVGREEDKE---AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN----EDFNS 233 (1141)
Q Consensus 161 ~~~vgr~~~~~---~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~~~ 233 (1141)
++++|.+..+. .+.+.+... ....+.++|++|+||||+|+.+++. ....|.. +... .+...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~~~i~dir~ 95 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-------RVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVLAGVKDLRA 95 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhhhhhHHHHH
Confidence 35788877664 344555433 3456789999999999999999974 3334421 1111 11111
Q ss_pred HHHH---Hh--cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEE--cCch--HHHHh-hCCCCceeCCCCCHHH
Q 001145 234 QLRR---LL--RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVT--TRSA--KVATI-VGTIPPYYLKGLSHDD 303 (1141)
Q Consensus 234 ~l~~---~l--~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvT--tr~~--~v~~~-~~~~~~~~l~~l~~~~ 303 (1141)
.+.+ .+ .+++.++++||++.-....++.+...+. .|+.++|+ |.+. .+... ......+.+.+++.++
T Consensus 96 ~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~ed 172 (725)
T PRK13341 96 EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDED 172 (725)
T ss_pred HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHH
Confidence 2222 12 2467799999997666666766665444 35555553 3332 12222 2234579999999999
Q ss_pred HHHHHhhcccCC-----CCCCcCcchhhHHHHhhcCCchh
Q 001145 304 CWTLFKQRAFAP-----GEEYLNFLPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 304 ~~~lf~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~Pl 338 (1141)
...++.+.+-.. .....-..+....|++.+.|..-
T Consensus 173 i~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 173 LHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 999998765310 01111223456778888888654
No 77
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=1.8e-05 Score=81.78 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=88.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHhcCcceeeeecCCCCC--ChHHHHHHHHhcc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLLRGRRYLLVLDDVWNE--DHEEWDKLRVSLS 267 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdvw~~--~~~~~~~l~~~l~ 267 (1141)
+.+.|+|+.|+|||+|++.+++... ..++... ++.......+.+ -++++||+... +...+-.+...+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~-~~~~~~~~~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~ 114 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN-EIGSDAANAAAE--GPVLIEDIDAGGFDETGLFHLINSVR 114 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH-HcchHHHHhhhc--CeEEEECCCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987432 1244442 333333333332 47888999432 2222222332232
Q ss_pred CCCCCcEEEEEcCc---------hHHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh
Q 001145 268 DGAEGSRVIVTTRS---------AKVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 268 ~~~~gs~ilvTtr~---------~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 338 (1141)
..|..||+|++. ++....+.....+++++++.++-.+++++.+-... -.--+++..-|++.+.|..-
T Consensus 115 --~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~--~~l~~ev~~~La~~~~r~~~ 190 (226)
T PRK09087 115 --QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ--LYVDPHVVYYLVSRMERSLF 190 (226)
T ss_pred --hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhhhHH
Confidence 246679998873 33444556667899999999999999998873321 12234567778888888776
Q ss_pred HHHH
Q 001145 339 AAKA 342 (1141)
Q Consensus 339 ai~~ 342 (1141)
++..
T Consensus 191 ~l~~ 194 (226)
T PRK09087 191 AAQT 194 (226)
T ss_pred HHHH
Confidence 6654
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=6.6e-06 Score=89.89 Aligned_cols=138 Identities=29% Similarity=0.452 Sum_probs=76.0
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+.+++.|++++| .++.+|. -.++|+.|.+++|..+..+|..+ .++|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445678888888888 5666662 23468888888877776666544 25788888888755554443 466
Q ss_pred EEEEccCCC--CCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeecc
Q 001145 973 SLSIENCEN--LAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHS 1050 (1141)
Q Consensus 973 ~L~L~~~~~--l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 1050 (1141)
.|++.++.. +..+| ++|+.|.+.++......+....-.++|+.|++++|... .+|+.+. .+|+.|+++.
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 666654322 22233 24566666432211000000011245666666666643 2333332 3666666655
Q ss_pred C
Q 001145 1051 C 1051 (1141)
Q Consensus 1051 n 1051 (1141)
|
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=2.8e-05 Score=81.37 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=91.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh--HHHHHHhcCcceeeeecCCCCCC-hHHHHHHH-Hh
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN--SQLRRLLRGRRYLLVLDDVWNED-HEEWDKLR-VS 265 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~l~~~l~~k~~LlvlDdvw~~~-~~~~~~l~-~~ 265 (1141)
..+.|+|+.|+|||+|++.+++... ..-..+.++.+..... ..+.+.+.. --++++||+.... ...|+... ..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~~~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l 122 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAWFVPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDL 122 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhhhhHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHH
Confidence 4789999999999999999987322 2223455666644211 122222221 2478999994321 23454322 22
Q ss_pred ccCC-CCC-cEEEEEcCch---------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcC
Q 001145 266 LSDG-AEG-SRVIVTTRSA---------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCG 334 (1141)
Q Consensus 266 l~~~-~~g-s~ilvTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~ 334 (1141)
+... ..| .++|+||+.. +....+....+++++++++++-.+.+.+++.... -.--+++..-|++.+.
T Consensus 123 ~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~ 200 (235)
T PRK08084 123 YNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLD 200 (235)
T ss_pred HHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhc
Confidence 2211 133 3799998753 3444566667899999999999999887663321 2223456777888888
Q ss_pred CchhHHHHH
Q 001145 335 GIPLAAKAL 343 (1141)
Q Consensus 335 g~Plai~~~ 343 (1141)
|..-++..+
T Consensus 201 ~d~r~l~~~ 209 (235)
T PRK08084 201 REMRTLFMT 209 (235)
T ss_pred CCHHHHHHH
Confidence 776555443
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.6e-05 Score=88.18 Aligned_cols=178 Identities=20% Similarity=0.178 Sum_probs=113.1
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------ccccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------------TKSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~ 221 (1141)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.... .+.|..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 46899999999999888754 13456789999999999999999762111 112333
Q ss_pred EEEEEeCcchh-H---HHHHH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchHHHHh-hCC
Q 001145 222 KIWVCVNEDFN-S---QLRRL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~---~l~~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v~~~-~~~ 290 (1141)
.+++....... . .+.+. ..+++-++|+|++..-....++.+...+......+.+|+ ||....+... ...
T Consensus 90 lieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR 169 (546)
T PRK14957 90 LIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR 169 (546)
T ss_pred eEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh
Confidence 44443322111 1 11111 245677999999977677778888888887656666654 5544444322 233
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHhhh
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALGSL 346 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 346 (1141)
...+++.+++.++....+.+.+-..+ ..........|++.++|.+- |+..+-.+
T Consensus 170 c~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 170 CIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45799999999998877776542211 12223456788999999664 55554433
No 81
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.8e-08 Score=97.89 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=86.6
Q ss_pred ccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCc--ccccCCCCCccEEeecCCCCCcccCc-Ccc-cc
Q 001145 941 IQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYI--PRGLGHLIALEHLTIMYCPSLAFLPE-NFR-NL 1016 (1141)
Q Consensus 941 l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~-~l 1016 (1141)
+..|.+|+.|.|.++.....+...+..-.+|+.|+++.|+..+.- .-.+.+++.|.+|+++.|........ ... --
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 344555555555555444434334444455555555555544322 12345555555666655544322111 111 12
Q ss_pred CCcceEEecCCCCc---ccccccCCCCCCcCeEeeccCCCCcc-cCcCCCCCCCcCEEeeccCCCccccCC---CCCCCC
Q 001145 1017 TMLKSLCILSCPEL---ASLPDELQHVTTLQSLEIHSCPAFKD-LPEWIGNLSSLTSLTISDCHTIISLPA---NLQHLT 1089 (1141)
Q Consensus 1017 ~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~-lp~~l~~l~~L~~L~l~~n~~~~~lp~---~~~~l~ 1089 (1141)
++|+.|+|+|+.-. ..+.--...+|+|..|||+.|..++. ....|.+++-|++|.++.|..+ +|+ .+...|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 34556666665321 11112234678888888888876543 2244667888999999988754 333 245678
Q ss_pred CcceEeccCC
Q 001145 1090 TLQHLSIREC 1099 (1141)
Q Consensus 1090 ~L~~L~l~~c 1099 (1141)
+|.+|++.||
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 9999999988
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=9.8e-06 Score=88.59 Aligned_cols=162 Identities=24% Similarity=0.350 Sum_probs=103.1
Q ss_pred cCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCcc
Q 001145 917 LGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALE 996 (1141)
Q Consensus 917 ~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 996 (1141)
+..+++++.|++++|. +..+|. --++|++|.+++|..+..+|..+ .++|++|.+++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 3456889999999995 555662 23469999999998888888654 36899999999877766663 577
Q ss_pred EEeecCCCC--CcccCcCccccCCcceEEecCCCCc--ccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEee
Q 001145 997 HLTIMYCPS--LAFLPENFRNLTMLKSLCILSCPEL--ASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTI 1072 (1141)
Q Consensus 997 ~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l 1072 (1141)
.|++.++.. ...+| ++|+.|.+.+++.. ..+|.. --++|+.|++++|..+ .+|+.+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 777775443 22233 35777877654321 111211 1268999999998865 3454333 68999999
Q ss_pred ccCCCcc-ccCCCCCCCCCcceEeccCCcchH
Q 001145 1073 SDCHTII-SLPANLQHLTTLQHLSIRECPRLE 1103 (1141)
Q Consensus 1073 ~~n~~~~-~lp~~~~~l~~L~~L~l~~c~~L~ 1103 (1141)
+.|.... .++.... .+++ .|++.+|.++.
T Consensus 185 s~n~~~sLeI~~~sL-P~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 185 HIEQKTTWNISFEGF-PDGL-DIDLQNSVLLS 214 (426)
T ss_pred cccccccccCccccc-cccc-EechhhhcccC
Confidence 8763221 1221111 1345 78888875544
No 83
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.12 E-value=3.6e-05 Score=85.96 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=106.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEe--Ccchh-----H
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCV--NEDFN-----S 233 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~-----~ 233 (1141)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+.+.... ..+. ..++.. +.... .
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-------~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~-~~~i~~~~~~~~~~~~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-------NMPHLLFAGPPGTGKTTAALALARELYG-EDWR-ENFLELNASDERGIDVIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHHHcC-Cccc-cceEEeccccccchHHHHH
Confidence 45889999999999888654 2345799999999999999999874211 1121 112222 22111 1
Q ss_pred HHHHHhc------CcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHH-hhCCCCceeCCCCCHHHHH
Q 001145 234 QLRRLLR------GRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVAT-IVGTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 234 ~l~~~l~------~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~-~~~~~~~~~l~~l~~~~~~ 305 (1141)
.+.+... ..+-++++|++..-....+..+...+......+++|+++... .+.. .......+++.++++++..
T Consensus 88 ~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~ 167 (319)
T PRK00440 88 KIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVA 167 (319)
T ss_pred HHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHH
Confidence 2222221 345689999986555555667777666555567777776432 1111 1122236889999999998
Q ss_pred HHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 306 TLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 306 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
..+.+.+-.... .-..+....+++.++|.+--+.
T Consensus 168 ~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 168 ERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 888877633221 1223467889999999876543
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=4.8e-05 Score=79.78 Aligned_cols=151 Identities=21% Similarity=0.112 Sum_probs=88.3
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDG 269 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~ 269 (1141)
..+.|+|..|+|||+||+.+++... .... ...++...+.... + .. ....-++|+||+..-+....+.+...+...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~~-~-~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~ 117 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLLA-F-DF-DPEAELYAVDDVERLDDAQQIALFNLFNRV 117 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHHH-H-hh-cccCCEEEEeChhhcCchHHHHHHHHHHHH
Confidence 4788999999999999999987421 1222 2445554432211 1 11 223457889999543333333444444321
Q ss_pred -CCCc-EEEEEcCchHHH--------HhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhH
Q 001145 270 -AEGS-RVIVTTRSAKVA--------TIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLA 339 (1141)
Q Consensus 270 -~~gs-~ilvTtr~~~v~--------~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 339 (1141)
..+. .+|+|++..... ..+.....+++.++++++-..++.+.+-... ..--.+....+++.+.|.+..
T Consensus 118 ~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 118 RAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred HHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHH
Confidence 2344 466776643221 1333345789999999887777765431111 122334677888889999988
Q ss_pred HHHHhhhh
Q 001145 340 AKALGSLM 347 (1141)
Q Consensus 340 i~~~~~~l 347 (1141)
+..+-..+
T Consensus 196 l~~~l~~l 203 (227)
T PRK08903 196 LMALLDAL 203 (227)
T ss_pred HHHHHHHH
Confidence 77666544
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.08 E-value=7.9e-05 Score=84.51 Aligned_cols=175 Identities=16% Similarity=0.191 Sum_probs=110.3
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc--------------------ccccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV--------------------TKSFE 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~--------------------~~~f~ 220 (1141)
.+++|.++.++.+.+.+... .-.+.+.++|++|+||||+|+.+...... ..+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 46899999999999888654 13457889999999999999888653110 11344
Q ss_pred eEEEEEeCcchh-H---HHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHHh-hC
Q 001145 221 LKIWVCVNEDFN-S---QLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VATI-VG 289 (1141)
Q Consensus 221 ~~~wv~~~~~~~-~---~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~ 289 (1141)
. +++....... . .+.+.+ .+++-++|+|++..-....+..+...+......+.+|++|.+.. +... ..
T Consensus 88 ~-~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s 166 (355)
T TIGR02397 88 V-IEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS 166 (355)
T ss_pred E-EEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh
Confidence 3 3443331111 1 122222 34556899999855445567777777765555667666665432 3222 22
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
....+++.++++++..+.+...+-..+. .-..+.+..+++.++|.|..+....
T Consensus 167 r~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 167 RCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred heeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 2347889999999988888876532221 1123567888999999887655443
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6e-08 Score=97.21 Aligned_cols=179 Identities=20% Similarity=0.195 Sum_probs=113.5
Q ss_pred CCccEEEEecCCCcc-ccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc--cCCCCCCcCE
Q 001145 897 PCLTSLTISSCPNLR-SISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE--GIEGLTSLRS 973 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~--~~~~l~~L~~ 973 (1141)
+.|+.|+|++..... .+...+..|.+|+.|.+.++.....+...+.+-.+|+.|+|+.|...+.... .+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357777777654332 2223356777788888887776666655666777888888888776554322 4467778888
Q ss_pred EEEccCCCCCCccc-ccCC-CCCccEEeecCCCCC---cccCcCccccCCcceEEecCCCCcc-cccccCCCCCCcCeEe
Q 001145 974 LSIENCENLAYIPR-GLGH-LIALEHLTIMYCPSL---AFLPENFRNLTMLKSLCILSCPELA-SLPDELQHVTTLQSLE 1047 (1141)
Q Consensus 974 L~L~~~~~l~~l~~-~~~~-l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~ 1047 (1141)
|+++.|........ .+.+ -++|+.|++++|... ..+..-...+++|..|+|+.|..+. .....+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 88888766543221 1122 246777888776432 1112223467788888888776543 2234566788899999
Q ss_pred eccCCCCcccCc---CCCCCCCcCEEeeccCCC
Q 001145 1048 IHSCPAFKDLPE---WIGNLSSLTSLTISDCHT 1077 (1141)
Q Consensus 1048 l~~n~~~~~lp~---~l~~l~~L~~L~l~~n~~ 1077 (1141)
++.|..+ +|. .+...|+|.+|++.+|--
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 9888743 332 356778899998887643
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.2e-05 Score=84.64 Aligned_cols=171 Identities=15% Similarity=0.106 Sum_probs=108.3
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccc-------------------cce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKS-------------------FEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~ 221 (1141)
.++||.+..+..|..++... .-.+.+.++|+.|+||||+|+.+++....... ...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 46899999999888888765 12346889999999999999999764221110 001
Q ss_pred EEEEEeCcch-hHHHH---HH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEE-EEcCchHHHHh-hCC
Q 001145 222 KIWVCVNEDF-NSQLR---RL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVI-VTTRSAKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~-~~~l~---~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~il-vTtr~~~v~~~-~~~ 290 (1141)
++.+...... ...++ +. ..++.-++|+|++..-....++.+...+........+| .||....+... ...
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 1112211111 11122 11 24566799999998777778888887776544455544 45554444333 233
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLA 339 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 339 (1141)
...|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+--
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 347999999999988888876532221 12334678899999998853
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=9e-05 Score=82.90 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHHHhCCCC---CCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------ccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS---GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------------TKS 218 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~ 218 (1141)
.+++|.+..++.+...+...... ....-.+.+.++|+.|+||||+|+.+...... ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46899999999999988764100 00112467889999999999999988652111 112
Q ss_pred cceEEEEEeC-cchh-HHHH---HHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh
Q 001145 219 FELKIWVCVN-EDFN-SQLR---RLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI 287 (1141)
Q Consensus 219 f~~~~wv~~~-~~~~-~~l~---~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~ 287 (1141)
.| ..++... .... ..++ +.. .+++-++++|++..-.......+...+.....+..+|++|.+ ..+...
T Consensus 85 pD-~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred CC-EEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 22 2233221 1111 1222 222 345568889999766666777777777665566666666555 344333
Q ss_pred -hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 288 -VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 288 -~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
.+....+.+.+++.++..+.+.+.. + ...+.+..+++.++|.|.....++
T Consensus 164 IrSRc~~i~f~~~~~~~i~~~L~~~~-~------~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 164 IRSRCRHVALRTPSVEAVAEVLVRRD-G------VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HHhhCeEEECCCCCHHHHHHHHHHhc-C------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 2333579999999999988887432 1 112456788999999997655443
No 89
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=4.9e-05 Score=86.36 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc------------------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT------------------------ 216 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~------------------------ 216 (1141)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhC------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 47899998888888888754 123568899999999999999886532111
Q ss_pred ----cccceEEEEEeCcch-hHH---HHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-Cch
Q 001145 217 ----KSFELKIWVCVNEDF-NSQ---LRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSA 282 (1141)
Q Consensus 217 ----~~f~~~~wv~~~~~~-~~~---l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~ 282 (1141)
.+++...+ ...... -.. +.+.+ .+++-++|+|++..-....++.+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~-~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEF-DAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEee-cccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 12232222 221111 112 22222 3556688999997666667888888887766677766555 444
Q ss_pred HHHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 283 KVATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 283 ~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
.+...+ .....+++.++++++..+.+...+-... ..-..+.+..+++.++|.+--+.
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 443321 1123688999999998888877652211 11234567889999999775433
No 90
>PRK05642 DNA replication initiation factor; Validated
Probab=98.03 E-value=7.3e-05 Score=78.12 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=91.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh--HHHHHHhcCcceeeeecCCCCC-ChHHHHH-HHHh
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN--SQLRRLLRGRRYLLVLDDVWNE-DHEEWDK-LRVS 265 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~l~~~l~~k~~LlvlDdvw~~-~~~~~~~-l~~~ 265 (1141)
..+.|+|..|+|||.|++++++. ....-..++|++..+-.. ..+.+.+++-. ++|+||+... ....|+. +...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l 122 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAELLDRGPELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHL 122 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHHHHhhhHHHHHhhhhCC-EEEEechhhhcCChHHHHHHHHH
Confidence 57899999999999999999873 222223467777643221 12333333222 6789999432 2235544 4333
Q ss_pred ccC-CCCCcEEEEEcCchH---------HHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC
Q 001145 266 LSD-GAEGSRVIVTTRSAK---------VATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG 335 (1141)
Q Consensus 266 l~~-~~~gs~ilvTtr~~~---------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 335 (1141)
+.. ...|..+|+|++... ....+.....+++++++.++..+.+++++.... -.--.++..-|++++.|
T Consensus 123 ~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~--~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 123 FNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG--LHLTDEVGHFILTRGTR 200 (234)
T ss_pred HHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCC
Confidence 322 234678999887532 222334445789999999999999987664321 11224567788888888
Q ss_pred chhHHHHHh
Q 001145 336 IPLAAKALG 344 (1141)
Q Consensus 336 ~Plai~~~~ 344 (1141)
..-++..+-
T Consensus 201 d~r~l~~~l 209 (234)
T PRK05642 201 SMSALFDLL 209 (234)
T ss_pred CHHHHHHHH
Confidence 765554433
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=6.9e-05 Score=86.00 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=108.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc-------------------ccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK-------------------SFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 221 (1141)
.++||.+.....|...+... .-.+.+.++|++|+||||+|+.+++...... .+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 46899988888887777654 1235688999999999999999976321110 0112
Q ss_pred EEEEEeCcch-hHHHH---HH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchHHHHhh-CC
Q 001145 222 KIWVCVNEDF-NSQLR---RL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAKVATIV-GT 290 (1141)
Q Consensus 222 ~~wv~~~~~~-~~~l~---~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v~~~~-~~ 290 (1141)
...+..+... ...++ +. ..+++-++|+|++..-.....+.+...+........+|+ ||....+...+ ..
T Consensus 88 v~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 88 VIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred cEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 3334433211 11222 22 235667999999965445566677777765444444444 44434444332 23
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC-chhHHHHHhhh
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG-IPLAAKALGSL 346 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~ 346 (1141)
...+++.+++.++....+.+.+..... .-..+....|++.++| .+.|+..+..+
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 347889999999988888877632221 1223456778887765 45666666554
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00013 Score=80.93 Aligned_cols=172 Identities=16% Similarity=0.139 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc------------------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT------------------------ 216 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~------------------------ 216 (1141)
.+++|.++.++.+.+.+... .-...+.++|+.|+||+|+|..+.+..-..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhccChHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 57899999999999888765 234578999999999999997775421100
Q ss_pred -----cccceEEEEEeC--cc-------hh-HHHHH---Hh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCc
Q 001145 217 -----KSFELKIWVCVN--ED-------FN-SQLRR---LL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGS 273 (1141)
Q Consensus 217 -----~~f~~~~wv~~~--~~-------~~-~~l~~---~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs 273 (1141)
+...-..|+... +. .. ..+++ .+ .+++.++|+|++...+...+..+...+.....++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 011122344321 11 11 12332 22 3567799999997777788888888887655566
Q ss_pred EEEEEcCch-HHHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 274 RVIVTTRSA-KVATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 274 ~ilvTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
.+|++|... .+...+ .....+.+.+++.++..+++.+.... ........+++.++|.|..+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~------~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD------LPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 666666654 333222 33347899999999999999875411 111122678999999998765554
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=8.4e-05 Score=87.30 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=111.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc------------------------c
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV------------------------T 216 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~------------------------~ 216 (1141)
.++||-+..+..|.+++... .-.+.+.++|+.|+||||+|+.+.+.... .
T Consensus 16 ~dviGQe~vv~~L~~~l~~~------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 46899888888888888765 13467789999999999999998542111 0
Q ss_pred cccceEEEEEeCcchhH-HHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHH
Q 001145 217 KSFELKIWVCVNEDFNS-QLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVAT 286 (1141)
Q Consensus 217 ~~f~~~~wv~~~~~~~~-~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~ 286 (1141)
+.+...+++........ .+++.+ .++.-++|+|+++.-....+..+...+.......++|++| ....+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 11222344433322211 333332 3455689999998777778888888887655566666555 4344432
Q ss_pred h-hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 287 I-VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 287 ~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
. ......+++++++.++..+.+.+.+-..+. .........|++.++|.+--+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 233457999999999998888876532221 11234567889999997754443
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.00 E-value=2.2e-05 Score=88.60 Aligned_cols=173 Identities=14% Similarity=0.057 Sum_probs=97.9
Q ss_pred cCccccchHHHHHHHHHHHhCCCC------CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc----
Q 001145 160 ESEVVGREEDKEAMIDLLASNGAS------GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE---- 229 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---- 229 (1141)
..++.|+++.+++|.+.+...-.. -+-..++-|.++|++|+|||++|+++++. ....|-.........
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~~~v~~~~l~~~~~g 198 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATFIRVVGSELVRKYIG 198 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCEEecchHHHHHHhhh
Confidence 357899999999998877432000 01123456899999999999999999984 333332111000000
Q ss_pred chhHHHHHHh----cCcceeeeecCCCCC-----------ChHHHHHHHHh---ccC--CCCCcEEEEEcCchHHH-Hhh
Q 001145 230 DFNSQLRRLL----RGRRYLLVLDDVWNE-----------DHEEWDKLRVS---LSD--GAEGSRVIVTTRSAKVA-TIV 288 (1141)
Q Consensus 230 ~~~~~l~~~l----~~k~~LlvlDdvw~~-----------~~~~~~~l~~~---l~~--~~~gs~ilvTtr~~~v~-~~~ 288 (1141)
.....++..+ ...+.+|++|+++.- +...+..+... +.. ...+.+||.||...... ..+
T Consensus 199 ~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al 278 (364)
T TIGR01242 199 EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAL 278 (364)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhh
Confidence 0001222222 345689999998531 11122223222 221 12466788888753221 121
Q ss_pred ----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 289 ----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 289 ----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.....+++...+.++..++|+.++.+.... +. .-...+++.+.|..
T Consensus 279 ~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 279 LRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-ED--VDLEAIAKMTEGAS 328 (364)
T ss_pred cCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-cc--CCHHHHHHHcCCCC
Confidence 123478899999999999999877443221 11 12466777777754
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=7.1e-05 Score=88.06 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=112.4
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-------------------cccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-------------------KSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 221 (1141)
.++||.+..++.|...+... .-.+.+.++|..|+||||+|+.+.+..... +.|.-
T Consensus 16 ~divGQe~vv~~L~~~l~~~------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCC
Confidence 47899999999998888764 123467899999999999999986632111 11222
Q ss_pred EEEEEeCcchh-HHHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCC
Q 001145 222 KIWVCVNEDFN-SQLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~ 290 (1141)
.+.+....... ..+++. ..+++-++|+|++..-....++.+...+.......++|.+|.+ ..+... ...
T Consensus 90 ~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR 169 (647)
T PRK07994 90 LIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (647)
T ss_pred ceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence 34443332111 112221 2466779999999877777888888888765555655555544 444322 233
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
...+.+++++.++....+.+.+-... ..........|++.++|.+-.+..+
T Consensus 170 C~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 170 CLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred heEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45799999999999988887652211 1122345578999999988644443
No 96
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.00 E-value=0.00012 Score=74.22 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=91.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccc--------------------cccceEEEEEeC-cchh-HHHH---HHh----
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVT--------------------KSFELKIWVCVN-EDFN-SQLR---RLL---- 239 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~-~~~~-~~l~---~~l---- 239 (1141)
...+.++|+.|+||||+|+.+.+..... .+.|. .++... .... ..++ +.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHHHHHHHHHccCc
Confidence 3678999999999999998886632111 12222 232221 1111 1222 222
Q ss_pred -cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCC
Q 001145 240 -RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPG 316 (1141)
Q Consensus 240 -~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~ 316 (1141)
.+.+-++|+|++..-....++.+...+....+.+.+|++|+.. .+...+ .....+.+.+++.++..+.+.+. +
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-- 168 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-- 168 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--
Confidence 3566789999996666667888888887766667777777643 332221 22347999999999998888776 1
Q ss_pred CCCcCcchhhHHHHhhcCCchhH
Q 001145 317 EEYLNFLPVGKEIVKKCGGIPLA 339 (1141)
Q Consensus 317 ~~~~~~~~~~~~i~~~~~g~Pla 339 (1141)
...+.+..|++.++|.|..
T Consensus 169 ----i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 ----ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred ----CCHHHHHHHHHHcCCCccc
Confidence 1235678999999998753
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.0001 Score=84.09 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=112.3
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc------c------------c-ccccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE------K------------V-TKSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~------~------------~-~~~f~~ 221 (1141)
.++||.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.... . + .+.+.-
T Consensus 13 ~dliGQe~vv~~L~~a~~~~------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 47899998888888777654 123478899999999999999886510 0 0 112223
Q ss_pred EEEEEeCcchh-HHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcC-chHHHHh-hCC
Q 001145 222 KIWVCVNEDFN-SQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTR-SAKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr-~~~v~~~-~~~ 290 (1141)
++.+..+.... ..+++.+ .+++-++|+|++..-.....+.+...+....+.+++|++|. ...+... ...
T Consensus 87 v~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR 166 (491)
T PRK14964 87 VIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166 (491)
T ss_pred EEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh
Confidence 44555442222 1233222 35667899999976666678888888877666777666554 3444433 233
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
...+.+.+++.++..+.+.+.+..... .-..+....|++.++|.+-.+
T Consensus 167 c~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred heeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 457899999999999988887643221 122345678999999877543
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00016 Score=79.72 Aligned_cols=174 Identities=15% Similarity=0.192 Sum_probs=110.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-----cc--c---------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-----TK--S--------------- 218 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-----~~--~--------------- 218 (1141)
..++|-++..+.+...+... .-...+.|+|+.|+||||+|+.+.+..-. .. .
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 57899999999999988754 23557899999999999999877653111 00 0
Q ss_pred ---cceEEEEEeC--c-------chh-H---HHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcE-EE
Q 001145 219 ---FELKIWVCVN--E-------DFN-S---QLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSR-VI 276 (1141)
Q Consensus 219 ---f~~~~wv~~~--~-------~~~-~---~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~-il 276 (1141)
.....++... . ... . .+.+.+ .+++-++|+|++..-+....+.+...+........ |+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 0011223211 0 000 1 223333 35677999999977777777778877765444444 45
Q ss_pred EEcCchHHHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 277 VTTRSAKVATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 277 vTtr~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
+|++...+...+ +....+++.+++.++..+++.+.... . . ...+....+++.++|.|..+..+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~--~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q--G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c--C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555544333222 22348999999999999999874311 1 1 123456789999999998665544
No 99
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=9.5e-05 Score=85.58 Aligned_cols=176 Identities=16% Similarity=0.204 Sum_probs=110.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc--------------------cccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT--------------------KSFE 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~ 220 (1141)
.+++|++..++.+...+... .-.+.+.++|+.|+||||+|+.+.+..... .+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 47899999999999888654 123578899999999999999986532110 1122
Q ss_pred eEEEEEeCcchhH-HHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHHh-hC
Q 001145 221 LKIWVCVNEDFNS-QLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVATI-VG 289 (1141)
Q Consensus 221 ~~~wv~~~~~~~~-~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~~-~~ 289 (1141)
.+++........ .+++. ..+++-++|+|++..-....+..+...+......+.+|++| ....+... ..
T Consensus 90 -iieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 90 -IVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred -eEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh
Confidence 344443221111 12222 12345579999997666677888888877655556665544 44444322 23
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHhh
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALGS 345 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 345 (1141)
....+++.++++++....+.+.+-..+. .-....+..+++.++|.+- |+..+-.
T Consensus 169 Rcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 169 RCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3457999999999998888876532211 1123456788999999664 4444443
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.0001 Score=85.63 Aligned_cols=174 Identities=17% Similarity=0.147 Sum_probs=111.1
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------ccccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------------TKSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~ 221 (1141)
.++||-+..++.|..++... .-...+.++|+.|+||||+|+.+.+.... .+.|.-
T Consensus 16 ~divGq~~v~~~L~~~~~~~------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 46899999999999999765 12356789999999999999988763211 112333
Q ss_pred EEEEEeCcchh-HHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCC
Q 001145 222 KIWVCVNEDFN-SQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~ 290 (1141)
++.+....... ..+++.+ .++.-++|+|++..-.......+...+......+++|++|.+ ..+... ...
T Consensus 90 ~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 90 LFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred EEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 44444332211 1233332 356678999999776677788888888766666776665543 333322 222
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
...+++++++.++-...+.+.+-..+. .-.......|++.++|.+--+..
T Consensus 170 c~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 170 CLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHH
Confidence 346889999999877776665422211 11223467788999998854433
No 101
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=7.4e-06 Score=59.10 Aligned_cols=38 Identities=37% Similarity=0.468 Sum_probs=18.6
Q ss_pred cccEEEccCCCCccccccccccccCceEecCCCccccc
Q 001145 542 YLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERL 579 (1141)
Q Consensus 542 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l 579 (1141)
+|++|++++|+++.+|..+++|++|++|++++|.|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555554455555555555555555443
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00015 Score=85.47 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc-----------------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK----------------------- 217 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----------------------- 217 (1141)
.+++|.+..++.|...+... +-...+.++|+.|+||||+|+.+.+......
T Consensus 24 ~dliGq~~~v~~L~~~~~~g------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 47899999999999988754 2345788999999999999999976321111
Q ss_pred -ccceEEEEEeCcch-hHHHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHH
Q 001145 218 -SFELKIWVCVNEDF-NSQLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVAT 286 (1141)
Q Consensus 218 -~f~~~~wv~~~~~~-~~~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~ 286 (1141)
...-++++...... -..++++ ..+++-++|+|++..-.....+.+...+......+++|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 01112333322211 1122222 13456689999997666667778888887666667776555 4343332
Q ss_pred hh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 287 IV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 287 ~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
.+ .....+.+..++.++....+.+.+-.... ....+....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22 23347899999999999888887632221 12235667889999998865543
No 103
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00023 Score=83.44 Aligned_cols=177 Identities=21% Similarity=0.232 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------ccccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------------TKSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~ 221 (1141)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+...... .+.|..
T Consensus 16 ~divGq~~v~~~L~~~i~~~------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 46899999999999888764 12356789999999999999998653211 112333
Q ss_pred EEEEEeCcchh-HHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCC
Q 001145 222 KIWVCVNEDFN-SQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~-~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~ 290 (1141)
.+++..+.... ..+++.+ .+++-++|+|++..-.......+...+......+.+|++|.+ ..+... ...
T Consensus 90 ~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 90 LIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred eeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH
Confidence 44554332211 1233222 356779999999766666777788888765556666665543 333211 111
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHhh
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALGS 345 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 345 (1141)
...+++++++.++..+.+.+.+-..+. .........|++.++|.+- |+..+-.
T Consensus 170 c~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 170 CLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 236889999999988888775532211 1223456788999999775 4444433
No 104
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0003 Score=83.13 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV------------------------- 215 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~------------------------- 215 (1141)
.++||.+..+..+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+....
T Consensus 16 ~eivGQe~i~~~L~~~i~~~------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 46899999888888888654 12356889999999999999888653211
Q ss_pred ---ccccceEEEEEeCcchhHHHH---HH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchH
Q 001145 216 ---TKSFELKIWVCVNEDFNSQLR---RL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAK 283 (1141)
Q Consensus 216 ---~~~f~~~~wv~~~~~~~~~l~---~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~ 283 (1141)
..+|+...+-..+...-..++ +. ..+++-++|+|++..-....++.+...+......+.+|+ |++...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 113343222111111011222 22 235566899999976666677888888876555566554 444444
Q ss_pred HHHh-hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHh
Q 001145 284 VATI-VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALG 344 (1141)
Q Consensus 284 v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 344 (1141)
+... ......+++.+++.++....+.+.+-.... .-..+.+..+++.++|..- |+..+-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4432 334457999999999988777765432111 1223467889999999554 444433
No 105
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00016 Score=82.89 Aligned_cols=155 Identities=15% Similarity=0.063 Sum_probs=92.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh-------------cCcceeeeecCCCCCC-
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL-------------RGRRYLLVLDDVWNED- 255 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l-------------~~k~~LlvlDdvw~~~- 255 (1141)
.-+.|+|..|+|||+|++++.+.......-..+++++.. ++...+...+ -.+.-++|+||+....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~-~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD-EFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH-HHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 358899999999999999998832111111234555553 2322111111 1234489999995322
Q ss_pred hHHH-HHHHHhccC-CCCCcEEEEEcCch---------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcch
Q 001145 256 HEEW-DKLRVSLSD-GAEGSRVIVTTRSA---------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLP 324 (1141)
Q Consensus 256 ~~~~-~~l~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~ 324 (1141)
...| +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++..+++.+++-.......--.+
T Consensus 221 k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~e 300 (450)
T PRK14087 221 KEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEE 300 (450)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 1222 333333322 12445688886532 233334455578899999999999999887432211123345
Q ss_pred hhHHHHhhcCCchhHHHHHhh
Q 001145 325 VGKEIVKKCGGIPLAAKALGS 345 (1141)
Q Consensus 325 ~~~~i~~~~~g~Plai~~~~~ 345 (1141)
+..-|++.++|.|-.+..+..
T Consensus 301 vl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 301 AINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHccCCCHHHHHHHHH
Confidence 778899999999987665543
No 106
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00012 Score=74.04 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=105.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh--HHHHHH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN--SQLRRL 238 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~l~~~ 238 (1141)
.+|||.++-++++.=++... ...++.+--|.++|++|.||||||.-+++.- ...+. ++..+... ..+...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AA--k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em--gvn~k----~tsGp~leK~gDlaai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAA--KKRGEALDHVLLFGPPGLGKTTLAHIIANEL--GVNLK----ITSGPALEKPGDLAAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHH--HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh--cCCeE----ecccccccChhhHHHH
Confidence 57999999999988777655 3344567789999999999999999999843 22221 22211111 122223
Q ss_pred ---hcCcceeeeecCCCCCChHHHHHHHHhccC--------CCCCcEEE-----------EEcCchHHHHhhCC--CCce
Q 001145 239 ---LRGRRYLLVLDDVWNEDHEEWDKLRVSLSD--------GAEGSRVI-----------VTTRSAKVATIVGT--IPPY 294 (1141)
Q Consensus 239 ---l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~--------~~~gs~il-----------vTtr~~~v~~~~~~--~~~~ 294 (1141)
|+. .=++.+|.++.-.+..-+.+..+..+ .++++|.+ -|||...+...+.. .-+.
T Consensus 98 Lt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~ 176 (332)
T COG2255 98 LTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQ 176 (332)
T ss_pred HhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCee
Confidence 333 34556788866544333334433333 12444433 38887544433221 2267
Q ss_pred eCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 295 YLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 295 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
+++--+.+|-.+...+.+-.- .-.-..+.+.+|+++..|-|--+.-+
T Consensus 177 rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 177 RLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHH
Confidence 788888999888888876221 12233457899999999999654433
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.82 E-value=0.00017 Score=74.25 Aligned_cols=172 Identities=20% Similarity=0.214 Sum_probs=93.3
Q ss_pred cCccccc-hHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccccc-c-eEEEEEeCcchhHH--
Q 001145 160 ESEVVGR-EEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSF-E-LKIWVCVNEDFNSQ-- 234 (1141)
Q Consensus 160 ~~~~vgr-~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~-- 234 (1141)
+.-++|. .+..-.....+.... + .....+.|+|..|+|||.|.+++++. +.... . .+++++.. +|...
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~--~--~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~~-~f~~~~~ 80 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENP--G--ERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSAE-EFIREFA 80 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHST--T--TSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEHH-HHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcC--C--CCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecHH-HHHHHHH
Confidence 3445565 333344444454441 1 12335789999999999999999984 32221 2 35555543 33322
Q ss_pred ----------HHHHhcCcceeeeecCCCCCC-hHHHHH-HHHhccC-CCCCcEEEEEcCch---------HHHHhhCCCC
Q 001145 235 ----------LRRLLRGRRYLLVLDDVWNED-HEEWDK-LRVSLSD-GAEGSRVIVTTRSA---------KVATIVGTIP 292 (1141)
Q Consensus 235 ----------l~~~l~~k~~LlvlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~ 292 (1141)
+.+.++ .-=++++||+..-. ...|.. +...+.. ...|.+||+|++.. +....+....
T Consensus 81 ~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl 159 (219)
T PF00308_consen 81 DALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL 159 (219)
T ss_dssp HHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE
T ss_pred HHHHcccchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc
Confidence 223333 34588899995432 233443 2222221 12567899999642 3444455566
Q ss_pred ceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 293 PYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 293 ~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
.+++++.+.++..+++.+.+-...-. --.++++-|++.+.+..-.+.
T Consensus 160 ~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 160 VVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp EEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 89999999999999999887432221 223456667777666554443
No 108
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=3.9e-06 Score=96.58 Aligned_cols=108 Identities=24% Similarity=0.263 Sum_probs=61.7
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++|+.|++.+|... .+...+..+++|++|++++|.+...- .+..++.|+.|++++|.+.. +. .+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-IS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-cc-CCccchhhh
Confidence 455566666776665432 22222455667777777777655432 35556667777777766443 22 344466677
Q ss_pred EEEEccCCCCCCcc-cccCCCCCccEEeecCCCCC
Q 001145 973 SLSIENCENLAYIP-RGLGHLIALEHLTIMYCPSL 1006 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~ 1006 (1141)
.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 77777655543322 1 355666666777666554
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00033 Score=79.47 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=105.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc------ccccceEE-EEEeCcch-h
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV------TKSFELKI-WVCVNEDF-N 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~------~~~f~~~~-wv~~~~~~-~ 232 (1141)
.+++|.+...+.+.+.+... .-.+.+.++|++|+||||+|+.+.+.... ...|...+ .+...... .
T Consensus 17 ~~iig~~~~~~~l~~~i~~~------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 46789999999999888754 13458889999999999999999763211 11222211 12111111 1
Q ss_pred HHHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHHh-hCCCCceeCCCCCHH
Q 001145 233 SQLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVATI-VGTIPPYYLKGLSHD 302 (1141)
Q Consensus 233 ~~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~~-~~~~~~~~l~~l~~~ 302 (1141)
..+++. ..+++-++++|++.......+..+...+......+.+|++| ....+... ......+++.+++++
T Consensus 91 ~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~ 170 (367)
T PRK14970 91 DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIK 170 (367)
T ss_pred HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHH
Confidence 122221 12456689999985545556777776665544455555555 33333222 223347899999999
Q ss_pred HHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 303 DCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 303 ~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
+....+.+.+...+. .-..+....+++.++|.+-.+
T Consensus 171 ~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 171 DIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 998888876643221 122356788888999866533
No 110
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=0.00011 Score=81.53 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=68.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS------- 233 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~------- 233 (1141)
.++++.+...+.+...|... +.|.++|++|+|||++|+++++.......|+.+.||++++.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~---------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK---------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC---------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 45788899999999988754 36788999999999999999885544556788889988764432
Q ss_pred ----------------HHHHHhc--CcceeeeecCCCCCChHH-HHHHHHhcc
Q 001145 234 ----------------QLRRLLR--GRRYLLVLDDVWNEDHEE-WDKLRVSLS 267 (1141)
Q Consensus 234 ----------------~l~~~l~--~k~~LlvlDdvw~~~~~~-~~~l~~~l~ 267 (1141)
.+.++.. ++++++|+|++-..+... +..+...+.
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1222222 468999999995544333 344444343
No 111
>PRK06620 hypothetical protein; Validated
Probab=97.80 E-value=0.00059 Score=69.95 Aligned_cols=135 Identities=10% Similarity=0.058 Sum_probs=79.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDG 269 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~ 269 (1141)
+.+.|+|++|+|||+|++.+++... . .++. ..+. ..+..+ ..-++++||+........-.+...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--~~~~~~-~~d~lliDdi~~~~~~~lf~l~N~~~-- 110 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--NEEILE-KYNAFIIEDIENWQEPALLHIFNIIN-- 110 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--chhHHh-cCCEEEEeccccchHHHHHHHHHHHH--
Confidence 5689999999999999999887432 1 1111 1110 112222 34578899994221111112222222
Q ss_pred CCCcEEEEEcCch-------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 270 AEGSRVIVTTRSA-------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 270 ~~gs~ilvTtr~~-------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
..|..||+|++.. .....+....++++++++.++...++++.+-... -.--+++..-|++.+.|.--.+
T Consensus 111 e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~--l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 111 EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS--VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccCCHHHH
Confidence 3566899998753 2333455556899999999998888887763211 1122456677777777755443
No 112
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.8e-05 Score=56.11 Aligned_cols=40 Identities=33% Similarity=0.510 Sum_probs=31.7
Q ss_pred ccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccC
Q 001145 564 ISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELP 604 (1141)
Q Consensus 564 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 604 (1141)
++|++|++++|+|+.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47899999999999999889999999999999986 44443
No 113
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00035 Score=80.23 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=108.3
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc---------------------cccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV---------------------TKSF 219 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---------------------~~~f 219 (1141)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+.+.... ..++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 47899999999998888754 12357889999999999999888652111 1123
Q ss_pred ceEEEEEeCcch--hH--HHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcC-chHHHHh-h
Q 001145 220 ELKIWVCVNEDF--NS--QLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTR-SAKVATI-V 288 (1141)
Q Consensus 220 ~~~~wv~~~~~~--~~--~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr-~~~v~~~-~ 288 (1141)
+ .+++...... +. .+.+.+ .+++-++|+|++........+.+...+........+|++|. ...+... .
T Consensus 91 d-~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~ 169 (451)
T PRK06305 91 D-VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL 169 (451)
T ss_pred c-eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH
Confidence 3 2233221111 11 122222 35677899999865555566777777776555666666653 3333222 2
Q ss_pred CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHH
Q 001145 289 GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKAL 343 (1141)
Q Consensus 289 ~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 343 (1141)
.....+++.++++++....+.+.+-..+ .....+.+..|++.++|.+- |+..+
T Consensus 170 sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 170 SRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2334789999999998888877652211 11223467889999999764 44443
No 114
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.77 E-value=4.3e-05 Score=79.60 Aligned_cols=40 Identities=28% Similarity=0.112 Sum_probs=34.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED 230 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 230 (1141)
..++|+|++|+|||||+++++++.... +|+..+|+.+.++
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~e 56 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDE 56 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccC
Confidence 378999999999999999999975544 8999999997655
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00048 Score=80.36 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc--------------------ccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK--------------------SFE 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~ 220 (1141)
.+++|.+..++.|.+.+... .-...+.++|+.|+||||+|+.+.+...... +.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 46889888888888877654 1245788999999999999999876432211 111
Q ss_pred eEEEEEeCcch-hH---HHHHH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hC
Q 001145 221 LKIWVCVNEDF-NS---QLRRL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VG 289 (1141)
Q Consensus 221 ~~~wv~~~~~~-~~---~l~~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~ 289 (1141)
++++...... -. .+.+. ..+++-++|+|++..-....+..|...+........+|++|.. ..+... ..
T Consensus 90 -v~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S 168 (624)
T PRK14959 90 -VVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS 168 (624)
T ss_pred -eEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh
Confidence 3344322111 11 22222 2456779999999766667778888877654445555555544 444322 22
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch-hHHHHHhhhh
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP-LAAKALGSLM 347 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 347 (1141)
....+++.+++.++....+...+..... .-..+.+..|++.++|.+ .|+..+..++
T Consensus 169 Rcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 169 RCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2347899999999999888876533221 122346788899999965 5777766544
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00042 Score=84.73 Aligned_cols=171 Identities=18% Similarity=0.172 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc----------------------cc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT----------------------KS 218 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----------------------~~ 218 (1141)
.++||.+..++.|...+... .-.+.+.++|+.|+||||+|+.+.+..... .+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 47899999999999988765 123568899999999999999886642211 12
Q ss_pred cceEEEEEeCcchh-HH---HHHH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHHh-
Q 001145 219 FELKIWVCVNEDFN-SQ---LRRL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVATI- 287 (1141)
Q Consensus 219 f~~~~wv~~~~~~~-~~---l~~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~~- 287 (1141)
++ ++++....... .. +.+. ..+++-++|||++.......++.|+..+..-...+.+|++| ....+...
T Consensus 89 ~d-v~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TI 167 (824)
T PRK07764 89 LD-VTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTI 167 (824)
T ss_pred Cc-EEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 33 33443322111 12 2221 24566689999997777788888888888766666666555 44444433
Q ss_pred hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 288 VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 288 ~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
......|++..++.++..+.+.+.+-... ..........|++.++|.+..+
T Consensus 168 rSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 168 RSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 23345789999999998888877542211 1112334577899999988443
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00058 Score=81.02 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=109.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-----------------cccceEE
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-----------------KSFELKI 223 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-----------------~~f~~~~ 223 (1141)
.+++|.+..++.+...+... +-.+.+.++|+.|+||||+|+.++...-.. .+++ ++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-II 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EE
Confidence 46899999999999988764 134577899999999999999886531110 1122 22
Q ss_pred EEEeCcch-hHHHH---HHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEE-EEcCchHHHHh-hCCCC
Q 001145 224 WVCVNEDF-NSQLR---RLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVI-VTTRSAKVATI-VGTIP 292 (1141)
Q Consensus 224 wv~~~~~~-~~~l~---~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~il-vTtr~~~v~~~-~~~~~ 292 (1141)
++...... ...++ +.+ .+++-++|+|++..-....+..+...+......+.+| +|++...+... .....
T Consensus 91 eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 91 EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence 23221111 11122 222 3567799999997666677888887776655455544 45555555432 23345
Q ss_pred ceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHh
Q 001145 293 PYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALG 344 (1141)
Q Consensus 293 ~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 344 (1141)
.+++.+++.++....+...+-..+. ......+..|++.++|.+- |+..+.
T Consensus 171 ~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 171 RFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred eEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999998888775422211 1123457789999999765 444433
No 118
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=7.7e-07 Score=100.04 Aligned_cols=196 Identities=22% Similarity=0.166 Sum_probs=118.3
Q ss_pred cCCCCccEEEEecCCCcccc-ccccCCCCccCeeecccccccccccccccCC-CCCCEEeEccCCC----------Cccc
Q 001145 894 ENNPCLTSLTISSCPNLRSI-SSKLGCLVALKSLTIRWCQELIALPQEIQNL-SLLESLEISECHS----------LTVL 961 (1141)
Q Consensus 894 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l-~~L~~L~Ls~~~~----------l~~~ 961 (1141)
.-+++++.|.+-.-+.-.-. |-.+..+.+|+.|.+++|++... .++..+ ..|+.|--.+ .. .+.+
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDI 157 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccc
Confidence 33455666655544332222 44466788999999999986431 111111 1233321111 10 0111
Q ss_pred cccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccc-cCCCC
Q 001145 962 PEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPD-ELQHV 1040 (1141)
Q Consensus 962 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l 1040 (1141)
..++ ....|.+.+.+. +.+..+..++.-++.|+.|++++|+..... .+..+++|+.|+|+.|.+. .+|. ....+
T Consensus 158 ~ns~-~Wn~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 158 SNSP-VWNKLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred ccch-hhhhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh
Confidence 1111 122456666665 445556667777888999999998876543 6778899999999998874 3343 22334
Q ss_pred CCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcccc-CCCCCCCCCcceEeccCCc
Q 001145 1041 TTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISL-PANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1041 ~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~l-p~~~~~l~~L~~L~l~~c~ 1100 (1141)
. |+.|.|++|... .+ .++.++.+|+.||+++|-+.+-- -+-+..+.+|..|++.|||
T Consensus 233 ~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 3 899999988754 33 45778889999999987655321 1124567788999999987
No 119
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00064 Score=79.74 Aligned_cols=178 Identities=19% Similarity=0.193 Sum_probs=113.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc----------------------cc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT----------------------KS 218 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----------------------~~ 218 (1141)
.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+..... .+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 47899999999999988764 134567899999999999999887632111 12
Q ss_pred cceEEEEEeCcch-hHHHH---HH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHHh-
Q 001145 219 FELKIWVCVNEDF-NSQLR---RL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVATI- 287 (1141)
Q Consensus 219 f~~~~wv~~~~~~-~~~l~---~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~~- 287 (1141)
.+ ++.+...... -..++ +. ..+++-++|+|++..-.....+.|...+........+|++| ....+...
T Consensus 87 ~d-vieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 87 ID-VVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred ce-EEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 22 3344332211 11222 11 13566789999997777778888888887766566655544 44444432
Q ss_pred hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHhhhh
Q 001145 288 VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALGSLM 347 (1141)
Q Consensus 288 ~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~l 347 (1141)
......+++..++.++..+.+.+.+-.... .........|++.++|.+- |+..+-.++
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233457999999999988888776532221 1123456778899999774 555554433
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.74 E-value=0.00015 Score=74.36 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=113.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEE-EEeCcchhH-----H
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIW-VCVNEDFNS-----Q 234 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~-----~ 234 (1141)
++++|.+..+..+...+... ...+...+|++|.|||+-|.+++...--...|.+++- .++|.+... .
T Consensus 36 de~~gQe~vV~~L~~a~~~~-------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR-------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc-------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 56889888888888877753 4568999999999999999888764333455665543 344432211 1
Q ss_pred HHH--Hhc----------Ccc-eeeeecCCCCCChHHHHHHHHhccCCCCCcE-EEEEcCchHHHHhh-CCCCceeCCCC
Q 001145 235 LRR--LLR----------GRR-YLLVLDDVWNEDHEEWDKLRVSLSDGAEGSR-VIVTTRSAKVATIV-GTIPPYYLKGL 299 (1141)
Q Consensus 235 l~~--~l~----------~k~-~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~-ilvTtr~~~v~~~~-~~~~~~~l~~l 299 (1141)
++. .+. -++ -.+|||++.....+.|..+...+.+....++ |+||+.-..+...+ ..-.-|..++|
T Consensus 109 ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 111 111 112 4789999987788999999998887665555 45555544333222 22235889999
Q ss_pred CHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHH
Q 001145 300 SHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKAL 343 (1141)
Q Consensus 300 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 343 (1141)
.+++...-++..+-.++. .-..+..+.|++.++|.-- |+.++
T Consensus 189 ~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 189 KDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred chHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 999988888887743332 2234567889999988653 44443
No 121
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.73 E-value=0.00018 Score=84.55 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=84.9
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc---ccccc--eEEEEEeCc---ch
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV---TKSFE--LKIWVCVNE---DF 231 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~---~~ 231 (1141)
++.+.||++++++|...|.+.-.. .....++.|+|++|.|||+.++.|.+.... ..... .+++|.... ..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 357899999999999988764211 112357789999999999999999864211 11111 145554421 11
Q ss_pred h---H------------------HHHHH---h-c--CcceeeeecCCCCCChHHHHHHHHhccC-CCCCcEEEE--EcCc
Q 001145 232 N---S------------------QLRRL---L-R--GRRYLLVLDDVWNEDHEEWDKLRVSLSD-GAEGSRVIV--TTRS 281 (1141)
Q Consensus 232 ~---~------------------~l~~~---l-~--~k~~LlvlDdvw~~~~~~~~~l~~~l~~-~~~gs~ilv--Ttr~ 281 (1141)
. . .+.++ + . +...+||||++..-....-+.|...+.. ...+++|+| .+.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 0 0 11121 1 1 1235899999943221122223322221 224556554 3322
Q ss_pred h--------HHHHhhCCCCceeCCCCCHHHHHHHHhhccc
Q 001145 282 A--------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAF 313 (1141)
Q Consensus 282 ~--------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~ 313 (1141)
. .+...++ ...+...+.+.++-.+++..++-
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 1 1222222 22467799999999999999874
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00058 Score=78.75 Aligned_cols=174 Identities=17% Similarity=0.207 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc---c-----------------cccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV---T-----------------KSFE 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~-----------------~~f~ 220 (1141)
.+++|-+..++.+...+... .-.++..++|+.|+||||+|+.+.+..-. . .+++
T Consensus 14 deiiGqe~v~~~L~~~I~~g------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 46899998889998888654 13457789999999999999977653110 0 1222
Q ss_pred eEEEEEeCcch-hHHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-hC
Q 001145 221 LKIWVCVNEDF-NSQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-VG 289 (1141)
Q Consensus 221 ~~~wv~~~~~~-~~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~ 289 (1141)
++.+...... -..+++.. .+++-++|+|++..-.......+...+......+++|++|.+. .+... ..
T Consensus 88 -v~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~S 166 (535)
T PRK08451 88 -IIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILS 166 (535)
T ss_pred -EEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHh
Confidence 2333322211 11222222 2456689999997777777888888887666667766666552 22221 22
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
....+++.+++.++....+.+.+-..+. .-..+.+..|++.++|.+--+..+
T Consensus 167 Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 167 RTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 2347899999999998888766532221 122356788999999988554443
No 123
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.73 E-value=3.7e-05 Score=83.17 Aligned_cols=53 Identities=28% Similarity=0.196 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF 231 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 231 (1141)
++++++..-+. =....|+|++|+||||||++||++.... +|+..+||.+.+..
T Consensus 158 rvID~l~PIGk------GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER 210 (416)
T PRK09376 158 RIIDLIAPIGK------GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDER 210 (416)
T ss_pred eeeeeeccccc------CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCc
Confidence 45666654421 1367899999999999999999965444 89999999988776
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.73 E-value=0.00037 Score=77.47 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=85.1
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHH----HH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQ----LR 236 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~----l~ 236 (1141)
.+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++.. ... ...+..+..-... +.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~------~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~~~~~~i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG------RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSDCRIDFVRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCcccHHHHHHHHH
Confidence 57899999999999988753 234678889999999999999998742 222 2233333211111 22
Q ss_pred HHh-----cCcceeeeecCCCCC-ChHHHHHHHHhccCCCCCcEEEEEcCchH-HHHh-hCCCCceeCCCCCHHHHHHHH
Q 001145 237 RLL-----RGRRYLLVLDDVWNE-DHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VATI-VGTIPPYYLKGLSHDDCWTLF 308 (1141)
Q Consensus 237 ~~l-----~~k~~LlvlDdvw~~-~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~lf 308 (1141)
+.. .+.+-++|+||+... .......+...+.....++++|+||.... +... ......+.+...+.++..+++
T Consensus 90 ~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il 169 (316)
T PHA02544 90 RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMM 169 (316)
T ss_pred HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHH
Confidence 222 235668999999544 23333445554555556778888886532 1111 122235677777777776665
Q ss_pred hh
Q 001145 309 KQ 310 (1141)
Q Consensus 309 ~~ 310 (1141)
..
T Consensus 170 ~~ 171 (316)
T PHA02544 170 KQ 171 (316)
T ss_pred HH
Confidence 43
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00052 Score=81.70 Aligned_cols=171 Identities=18% Similarity=0.207 Sum_probs=111.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc---------------------ccccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK---------------------VTKSF 219 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---------------------~~~~f 219 (1141)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+..... ...+|
T Consensus 17 ~~viGq~~~~~~L~~~i~~~------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 47899999999999988764 1345788999999999999988765321 11245
Q ss_pred ceEEEEEeCcch-hHHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHHh-h
Q 001145 220 ELKIWVCVNEDF-NSQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVATI-V 288 (1141)
Q Consensus 220 ~~~~wv~~~~~~-~~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~~-~ 288 (1141)
+. ..+...... ...+++.+ .+++-++|+|++..-....++.+...+......+.+|++| +...+... .
T Consensus 91 n~-~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~ 169 (614)
T PRK14971 91 NI-HELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTIL 169 (614)
T ss_pred ce-EEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHH
Confidence 53 233333222 12233322 3456688999997666777888888887766666665544 44444433 2
Q ss_pred CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 289 GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 289 ~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
.....+++.++++++....+.+.+-..+. ....+.+..|++.++|..--+
T Consensus 170 SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 170 SRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred hhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 33457999999999998888876532221 122345788999999977543
No 126
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.71 E-value=7.3e-06 Score=94.37 Aligned_cols=196 Identities=21% Similarity=0.181 Sum_probs=104.1
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcccc-ccCCCCCCc
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLP-EGIEGLTSL 971 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~~l~~L 971 (1141)
+..+++|+.|++++|...+.. .+..++.|+.|++++|.+... ..+..+++|+.+++++|.+...-+ . ...+.+|
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISL 188 (414)
T ss_pred hhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccch
Confidence 445677777777776544332 244556677777777775543 245557777777777777554333 1 3566777
Q ss_pred CEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccC--CcceEEecCCCCcccccccCCCCCCcCeEeec
Q 001145 972 RSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLT--MLKSLCILSCPELASLPDELQHVTTLQSLEIH 1049 (1141)
Q Consensus 972 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1049 (1141)
+.+.+.+|.+...- .+..+..+..+++..|.+...-+ +..+. +|+.+++++|++.. +++.+..+..+..|++.
T Consensus 189 ~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 189 EELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLS 263 (414)
T ss_pred HHHhccCCchhccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchh
Confidence 77777775554321 23333444444555555443221 11122 36666677666532 22445556666666666
Q ss_pred cCCCCcccCcCCCCCCCcCEEeeccCCCccc---cCCC-CCCCCCcceEeccCCc
Q 001145 1050 SCPAFKDLPEWIGNLSSLTSLTISDCHTIIS---LPAN-LQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1050 ~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~---lp~~-~~~l~~L~~L~l~~c~ 1100 (1141)
+|.+... ..+...+.+..+....+.+... .... ....+.++.+.+.++|
T Consensus 264 ~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 264 SNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred hcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 6554322 2234444555555555544311 1111 2334555555555554
No 127
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00074 Score=79.40 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=112.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc--------------------cccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT--------------------KSFE 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~ 220 (1141)
.+++|-+..++.+...+... .-.+.+.++|+.|+||||+|+.+++..... .+++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 47899999999999988764 134578899999999999999997642211 1333
Q ss_pred eEEEEEeCc-chhHHHHHH--------hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hC
Q 001145 221 LKIWVCVNE-DFNSQLRRL--------LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VG 289 (1141)
Q Consensus 221 ~~~wv~~~~-~~~~~l~~~--------l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~ 289 (1141)
. +++.... ..-..+++. ..+++-++|+|++..-....++.+...+......+.+|++|.. ..+... ..
T Consensus 90 v-~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 90 V-IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred e-EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 2 3333221 111122222 2456778999999766667788888888765566666665543 344332 22
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
....+++.+++.++..+.+.+.+.... ..-..+.+..|++.++|.+-.+..
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~eg--i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQ--IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 234689999999998888877653322 122335667799999998754433
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00075 Score=80.68 Aligned_cols=173 Identities=18% Similarity=0.193 Sum_probs=109.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc---------------------ccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT---------------------KSF 219 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---------------------~~f 219 (1141)
.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+..... .+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence 47899999999998888754 123567899999999999999887532110 012
Q ss_pred ceEEEEEeCcchh-HHHH---HHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-h
Q 001145 220 ELKIWVCVNEDFN-SQLR---RLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-V 288 (1141)
Q Consensus 220 ~~~~wv~~~~~~~-~~l~---~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~ 288 (1141)
+ ++.+..+.... ..++ +.+ .+++-++|+|++..-.....+.+...+......+.+|++|.. ..+... .
T Consensus 90 d-~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 90 D-VIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred e-EEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 2 23333321111 1122 222 255678999999655556677787777765556666665543 333322 2
Q ss_pred CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 289 GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 289 ~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
.....+.+..++.++....+.+.+...+. .-..+.+..|++.++|.+..+..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22346889999999988888776533221 12235678899999998865443
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0011 Score=76.53 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=108.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------------ccccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------------TKSFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~ 221 (1141)
.+++|.+..+..+...+... .-.+...++|+.|+||||+|+.++..... .+.|..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred HHccChHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 46889999999998888764 12346778999999999999988653110 011222
Q ss_pred EEEEEeCcchhH----HHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc-CchHHHHh-hCC
Q 001145 222 KIWVCVNEDFNS----QLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT-RSAKVATI-VGT 290 (1141)
Q Consensus 222 ~~wv~~~~~~~~----~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt-r~~~v~~~-~~~ 290 (1141)
.+++..+..... .+.+.. .+++-++|+|++..-.....+.+...+........+|++| +...+... ...
T Consensus 90 ~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR 169 (486)
T PRK14953 90 LIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR 169 (486)
T ss_pred EEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh
Confidence 344433221111 222222 3567799999997655666777777776655555555544 44333322 223
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
...+.+.+++.++....+.+.+-..+. ....+.+..+++.++|.+..+...
T Consensus 170 c~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 170 CQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 347899999999988888776532211 122345677888899977644443
No 130
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=4.3e-07 Score=101.97 Aligned_cols=84 Identities=23% Similarity=0.210 Sum_probs=37.5
Q ss_pred cccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccc-ccCCCCCccEEeecCCCCCcccCcCccccCC
Q 001145 940 EIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPR-GLGHLIALEHLTIMYCPSLAFLPENFRNLTM 1018 (1141)
Q Consensus 940 ~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 1018 (1141)
.++-++.|+.|+|++|+..... .+..++.|++|+|++|. +..+|. +..++. |..|.+.+|.+.+. .++.++.+
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 3444555555555555543321 34445555555555532 233332 112222 55555555544321 13334444
Q ss_pred cceEEecCCCC
Q 001145 1019 LKSLCILSCPE 1029 (1141)
Q Consensus 1019 L~~L~L~~n~~ 1029 (1141)
|+.|+++.|-+
T Consensus 256 L~~LDlsyNll 266 (1096)
T KOG1859|consen 256 LYGLDLSYNLL 266 (1096)
T ss_pred hhccchhHhhh
Confidence 44455554443
No 131
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.67 E-value=0.00018 Score=81.30 Aligned_cols=169 Identities=15% Similarity=0.083 Sum_probs=95.3
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---- 230 (1141)
+++.|+++.++++.+.+...-. .-+...++-|.++|++|+|||++|+++++.. ...|- .+..++-
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~~i---~v~~~~l~~~~ 205 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATFI---RVVGSELVQKF 205 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCCEE---EeehHHHhHhh
Confidence 4789999999999887643100 0011245678999999999999999999832 22221 1111111
Q ss_pred ---hhHHHHHHh----cCcceeeeecCCCCC-----------ChHHHHHHHHhccC-----CCCCcEEEEEcCchHH-HH
Q 001145 231 ---FNSQLRRLL----RGRRYLLVLDDVWNE-----------DHEEWDKLRVSLSD-----GAEGSRVIVTTRSAKV-AT 286 (1141)
Q Consensus 231 ---~~~~l~~~l----~~k~~LlvlDdvw~~-----------~~~~~~~l~~~l~~-----~~~gs~ilvTtr~~~v-~~ 286 (1141)
....++..+ ...+.+|++|++..- +...+..+...+.. ...+..||.||..... ..
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~ 285 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDP 285 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCH
Confidence 111222222 345689999998421 11222233333321 1235567777765332 22
Q ss_pred hh----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+ .-...+++...+.++..++|+.+..+..-. .. .....+++.+.|.-
T Consensus 286 allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 286 AILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DD--VDLEELAELTEGAS 337 (389)
T ss_pred HHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-Cc--CCHHHHHHHcCCCC
Confidence 22 123468899999999999999876432211 11 12356667766643
No 132
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.00045 Score=74.37 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=70.6
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-h--------hHHHHHHh-cCcceeeeecCCCCC------
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-F--------NSQLRRLL-RGRRYLLVLDDVWNE------ 254 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~--------~~~l~~~l-~~k~~LlvlDdvw~~------ 254 (1141)
-+.++|++|+||||+|+.++......+......++.++.+ . ...+.+.+ +...-+|++|++..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~ 139 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNE 139 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCc
Confidence 5789999999999999777652111111111123333321 1 01222333 223468899998421
Q ss_pred ---ChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhhC--------CCCceeCCCCCHHHHHHHHhhcc
Q 001145 255 ---DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIVG--------TIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 255 ---~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~--------~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
....++.+...+.....+.+||+++.......... ....+++.+++.+|-.+++.+.+
T Consensus 140 ~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 140 RDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 12334556666665556667777776543322211 12468899999999999988875
No 133
>CHL00181 cbbX CbbX; Provisional
Probab=97.65 E-value=0.00071 Score=72.75 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=72.3
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-hh--------HHHHHHhc-CcceeeeecCCCCC-----
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-FN--------SQLRRLLR-GRRYLLVLDDVWNE----- 254 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~--------~~l~~~l~-~k~~LlvlDdvw~~----- 254 (1141)
..+.++|++|+||||+|+.++......+.-....|+.++.+ +. ....+.+. ...-+|++|++..-
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~ 139 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN 139 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC
Confidence 35889999999999999999763211111111224444421 11 12223331 23458999998531
Q ss_pred ----ChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhh--------CCCCceeCCCCCHHHHHHHHhhcc
Q 001145 255 ----DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIV--------GTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 255 ----~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~--------~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
..+..+.+...+.+...+.+||+++....+.... .....+.+.+++.+|..+++.+.+
T Consensus 140 ~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 140 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 1233445555565555566777887654432211 123368899999999999988876
No 134
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.64 E-value=0.00049 Score=73.63 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=80.0
Q ss_pred ccccchHHHHHHHHH---HHh------CCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-ch
Q 001145 162 EVVGREEDKEAMIDL---LAS------NGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-DF 231 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~---l~~------~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~ 231 (1141)
.++|.+..+++|.+. ..- .+.. .......+.++|++|+||||+|+.+++.....+.-....++.++. ++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~-~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLK-TSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 578888777666533 211 1111 122345688999999999999999976311001111112232221 01
Q ss_pred --------hHHHHHHhc-CcceeeeecCCCCCC--------hHHHHHHHHhccCCCCCcEEEEEcCchHHHH------hh
Q 001145 232 --------NSQLRRLLR-GRRYLLVLDDVWNED--------HEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT------IV 288 (1141)
Q Consensus 232 --------~~~l~~~l~-~k~~LlvlDdvw~~~--------~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~------~~ 288 (1141)
...+.+.+. ...-+|++|++..-. ....+.+...+........+++++....... .+
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred hhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHH
Confidence 112333332 224588999995311 2234455555544433445566655433211 11
Q ss_pred -CC-CCceeCCCCCHHHHHHHHhhcc
Q 001145 289 -GT-IPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 289 -~~-~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.. ...+.+.+++.++..+++.+.+
T Consensus 166 ~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 166 RSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred HhccceEEEECCCCHHHHHHHHHHHH
Confidence 11 2357889999999999888766
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00029 Score=86.81 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=85.4
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc---cccccc-ceEEEEEe-C-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE---KVTKSF-ELKIWVCV-N------- 228 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~-~------- 228 (1141)
+.++||+++++++++.|... ...-+.++|++|+|||++|+.++... .+...+ +..+|..- +
T Consensus 182 ~~~igr~~ei~~~~~~L~~~-------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~ 254 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR-------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTK 254 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC-------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcc
Confidence 46899999999999988755 22346799999999999999998732 111111 33444321 1
Q ss_pred --cchhHHHHHHh----cCcceeeeecCCCCC---------ChHHHHHHHHhccCCCCCcEEEEEcCchHHHH------h
Q 001145 229 --EDFNSQLRRLL----RGRRYLLVLDDVWNE---------DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT------I 287 (1141)
Q Consensus 229 --~~~~~~l~~~l----~~k~~LlvlDdvw~~---------~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~------~ 287 (1141)
.++...+++.+ +.++.+|++|++..- +.+..+.++..+..+. -++|-+|...+... .
T Consensus 255 ~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~--i~~IgaTt~~e~~~~~~~d~a 332 (731)
T TIGR02639 255 YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK--LRCIGSTTYEEYKNHFEKDRA 332 (731)
T ss_pred ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC--eEEEEecCHHHHHHHhhhhHH
Confidence 12333555554 346789999998421 1122334444444321 23444444322111 1
Q ss_pred -hCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 288 -VGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 288 -~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
...-..+++..++.++..++++...
T Consensus 333 l~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 333 LSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1223468999999999999998654
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0011 Score=78.95 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=108.1
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc----------------------c
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK----------------------S 218 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----------------------~ 218 (1141)
.+++|.+..+..|..++... .-.+.+.++|+.|+||||+|+.+++...... +
T Consensus 16 ~~liGq~~i~~~L~~~l~~~------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcC------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCC
Confidence 46889999999998888764 1234678999999999999999976422110 1
Q ss_pred cceEEEEEeCcch-hHHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcC-chHHHHh-
Q 001145 219 FELKIWVCVNEDF-NSQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTR-SAKVATI- 287 (1141)
Q Consensus 219 f~~~~wv~~~~~~-~~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr-~~~v~~~- 287 (1141)
.| ++.+...... -..+++.+ .+++-++|+|++..-....+..+...+......+.+|++|. ...+...
T Consensus 90 ~D-~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LD-VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred cc-EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 11 2223222111 11233322 35566899999976666778888888876545555555444 3333322
Q ss_pred hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 288 VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 288 ~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
......+++..++.++....+.+.+-.... .-..+.+..|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223346888899999888777765532111 112245788999999987654433
No 137
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=3.4e-05 Score=77.98 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=49.4
Q ss_pred cCCcceEEecCCCCcccc-cccCCCCCCcCeEeeccCCCCcccC--cCCCCCCCcCEEeeccCCCccccCC------CCC
Q 001145 1016 LTMLKSLCILSCPELASL-PDELQHVTTLQSLEIHSCPAFKDLP--EWIGNLSSLTSLTISDCHTIISLPA------NLQ 1086 (1141)
Q Consensus 1016 l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~lp--~~l~~l~~L~~L~l~~n~~~~~lp~------~~~ 1086 (1141)
++++..+.+..|++.+.- ......++.+..|+|+.+++ +++. ..+..+++|..|.++++|+...+-. .+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 556666667666654322 23344566677777777663 3221 3456778888888888887765432 234
Q ss_pred CCCCcceEecc
Q 001145 1087 HLTTLQHLSIR 1097 (1141)
Q Consensus 1087 ~l~~L~~L~l~ 1097 (1141)
.++++++|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 56777777655
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.00085 Score=76.74 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=79.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh-----------cCcceeeeecCCCCCChHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL-----------RGRRYLLVLDDVWNEDHEE 258 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l-----------~~k~~LlvlDdvw~~~~~~ 258 (1141)
.-+.|+|+.|+|||+|++++.+.. ...-..+++++.. .+...+...+ -...-++++||+.......
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~~-~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~ 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRSE-LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKG 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeHH-HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCCh
Confidence 467899999999999999999843 2222334555542 2222222111 1234488999984322111
Q ss_pred --HHHHHHhccC-CCCCcEEEEEcCch---------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhh
Q 001145 259 --WDKLRVSLSD-GAEGSRVIVTTRSA---------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVG 326 (1141)
Q Consensus 259 --~~~l~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~ 326 (1141)
.+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++.+++-... ..--.++.
T Consensus 219 ~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~--~~l~~evl 296 (445)
T PRK12422 219 ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS--IRIEETAL 296 (445)
T ss_pred hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHH
Confidence 1223222211 11355688887541 2222334445788999999999999988773321 11122345
Q ss_pred HHHHhhcCCc
Q 001145 327 KEIVKKCGGI 336 (1141)
Q Consensus 327 ~~i~~~~~g~ 336 (1141)
.-|+..+.|.
T Consensus 297 ~~la~~~~~d 306 (445)
T PRK12422 297 DFLIEALSSN 306 (445)
T ss_pred HHHHHhcCCC
Confidence 5566666543
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.56 E-value=0.0003 Score=87.17 Aligned_cols=142 Identities=17% Similarity=0.268 Sum_probs=84.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc---cc-cccceEEE-EEeC-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK---VT-KSFELKIW-VCVN------- 228 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~-~~f~~~~w-v~~~------- 228 (1141)
+.++||+.+++++++.|... ...-+.++|.+|+||||+|+.++.... +. .-....+| +..+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~ 259 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS 259 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc
Confidence 46899999999999988765 223556999999999999999987321 01 11223344 2111
Q ss_pred --cchhHHHHHHh-----cCcceeeeecCCCCCC-------hHHH-HHHHHhccCCCCCcEEEEEcCchHHHHh------
Q 001145 229 --EDFNSQLRRLL-----RGRRYLLVLDDVWNED-------HEEW-DKLRVSLSDGAEGSRVIVTTRSAKVATI------ 287 (1141)
Q Consensus 229 --~~~~~~l~~~l-----~~k~~LlvlDdvw~~~-------~~~~-~~l~~~l~~~~~gs~ilvTtr~~~v~~~------ 287 (1141)
.++...+++.+ .+++.++++|++..-. ..+. ..++..+..+ .-++|-||...+....
T Consensus 260 ~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT~~e~~~~~~~d~A 337 (852)
T TIGR03345 260 VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATTWAEYKKYFEKDPA 337 (852)
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecCHHHHhhhhhccHH
Confidence 22223444433 2468999999984321 1111 1244444332 2345555554322111
Q ss_pred -hCCCCceeCCCCCHHHHHHHHhhc
Q 001145 288 -VGTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 288 -~~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
...-..+.+.+++.++..++++..
T Consensus 338 L~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 338 LTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 122347999999999999997544
No 140
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.54 E-value=4.3e-05 Score=82.05 Aligned_cols=209 Identities=23% Similarity=0.231 Sum_probs=129.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc------------------------hhHHHHHHhcCcc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED------------------------FNSQLRRLLRGRR 243 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~------------------------~~~~l~~~l~~k~ 243 (1141)
..+.+.++|.|||||||++-.+.. +...|....|..--.. .-..+.....++|
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 357899999999999999988876 3444554443321111 1125667778999
Q ss_pred eeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhhCCCCceeCCCCCHH-HHHHHHhhcccCCCC---CC
Q 001145 244 YLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIVGTIPPYYLKGLSHD-DCWTLFKQRAFAPGE---EY 319 (1141)
Q Consensus 244 ~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~l~~~-~~~~lf~~~~~~~~~---~~ 319 (1141)
.++|+||.-+- ...-..+...+-.+...-.|+.|+|..... .......+..|+.. ++.++|...+.-... -.
T Consensus 90 ~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 90 ALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred HHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 99999997211 112222333444445555688888865332 23345667777664 688888765432211 12
Q ss_pred cCcchhhHHHHhhcCCchhHHHHHhhhhcccCCh-------hhHHHhhcccccccccCccchhHHHHhhccCCcchhhhh
Q 001145 320 LNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREE-------GDWLYVQESDLWNACEGENRILPALRLSYSHLPSHLKCC 392 (1141)
Q Consensus 320 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~c 392 (1141)
........+|.++..|.|++|...++..+.-... +.|....+- ......-.....+.+.+||.-|..-.+--
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 2334578899999999999999988876554321 222222111 00001112347788999999999988888
Q ss_pred hccccccCCCce
Q 001145 393 FTFCSVFPKNFV 404 (1141)
Q Consensus 393 f~~~~~fp~~~~ 404 (1141)
|--++.|.-.+.
T Consensus 245 ~~rLa~~~g~f~ 256 (414)
T COG3903 245 FGRLAVFVGGFD 256 (414)
T ss_pred hcchhhhhhhhc
Confidence 878888776543
No 141
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.53 E-value=0.00012 Score=69.15 Aligned_cols=91 Identities=25% Similarity=0.245 Sum_probs=53.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccc---cccceEEEEEeCcchhH--------------------------HHHHHh
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVT---KSFELKIWVCVNEDFNS--------------------------QLRRLL 239 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~--------------------------~l~~~l 239 (1141)
-+++.|+|.+|+|||++++++.++.... ..-..++|+.+...... .+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999998742110 00234568776543311 334444
Q ss_pred cC-cceeeeecCCCCC-ChHHHHHHHHhccCCCCCcEEEEEcCc
Q 001145 240 RG-RRYLLVLDDVWNE-DHEEWDKLRVSLSDGAEGSRVIVTTRS 281 (1141)
Q Consensus 240 ~~-k~~LlvlDdvw~~-~~~~~~~l~~~l~~~~~gs~ilvTtr~ 281 (1141)
.. +..+||+|++..- ....++.+.... + ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 33 3469999999543 444445554433 3 566677777655
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0019 Score=76.45 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=107.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc--------------------ccccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV--------------------TKSFE 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~--------------------~~~f~ 220 (1141)
.+++|.+..++.+...+... .-.+...++|+.|+||||+|+.+...... ..+++
T Consensus 16 ~~viGq~~v~~~L~~~i~~~------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD 89 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 47899999999999888764 13457788999999999999888652111 11333
Q ss_pred eEEEEEeCcchh-HHHH---HH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchHHHHh-hC
Q 001145 221 LKIWVCVNEDFN-SQLR---RL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAKVATI-VG 289 (1141)
Q Consensus 221 ~~~wv~~~~~~~-~~l~---~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v~~~-~~ 289 (1141)
++.+....... ..++ +. ..+++-++|+|++..-....+..+...+........+|+ ||....+... ..
T Consensus 90 -v~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~S 168 (559)
T PRK05563 90 -VIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILS 168 (559)
T ss_pred -eEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHh
Confidence 23333322111 1222 22 145667889999976666678888877765444555554 4444443322 22
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
....+.+.+++.++....+...+-..+. .........|++.++|.+..+.
T Consensus 169 Rc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 169 RCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 3346889999999988888776532221 1123456788888988775443
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0015 Score=77.58 Aligned_cols=176 Identities=16% Similarity=0.211 Sum_probs=108.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc--------------------cccc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT--------------------KSFE 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~ 220 (1141)
.+++|.+..+..|...+... .-.+.+.++|+.|+||||+|+.+.+..... .+++
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 47899999999998888754 123567899999999999999886632111 1222
Q ss_pred eEEEEEeCcch-hH---HHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchHHHHh-hC
Q 001145 221 LKIWVCVNEDF-NS---QLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAKVATI-VG 289 (1141)
Q Consensus 221 ~~~wv~~~~~~-~~---~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~v~~~-~~ 289 (1141)
. +.+...... -. .+.+.+ .+++-++|+|++..-.......+...+......+.+|+ ||....+... ..
T Consensus 90 ~-~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S 168 (576)
T PRK14965 90 V-FEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS 168 (576)
T ss_pred e-eeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH
Confidence 2 222221111 11 222222 34566899999976666677788888876555666655 5444545433 22
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch-hHHHHHhh
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP-LAAKALGS 345 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 345 (1141)
....+++.+++.++....+...+-..+ ..-..+....|++.++|.. .|+..+-.
T Consensus 169 Rc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 169 RCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334788999999988877776542211 1122345678889999866 44444433
No 144
>PTZ00202 tuzin; Provisional
Probab=97.49 E-value=0.0027 Score=69.36 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=41.8
Q ss_pred cccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 158 VIESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 158 ~~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...+.|+||+++...+...|.+.+. ...++++|+|++|+|||||++.+...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~----~~privvLtG~~G~GKTTLlR~~~~~ 309 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT----AHPRIVVFTGFRGCGKSSLCRSAVRK 309 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC----CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999875421 13469999999999999999999864
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0026 Score=69.23 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=109.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-------------ccccceEEEEEe
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-------------TKSFELKIWVCV 227 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~ 227 (1141)
.+++|.+..++.+...+... .-.+...++|+.|+||+++|..+.+..-. ....+-..|+..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 46899999999999988765 12468999999999999999777542110 112233455532
Q ss_pred C---cc--------------------hh-H---HHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEE
Q 001145 228 N---ED--------------------FN-S---QLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRV 275 (1141)
Q Consensus 228 ~---~~--------------------~~-~---~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~i 275 (1141)
. ++ .. . .+.+.+ .+++-++|+|++.......+..+...+....+..-|
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 1 00 00 1 233333 466778999999766667788888888655543334
Q ss_pred EEEcCchHHHHh-hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 276 IVTTRSAKVATI-VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 276 lvTtr~~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
++|+....+... .+....+++.++++++..+.+.+..... ........++..++|.|..+...
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHH
Confidence 445444444332 2334579999999999999998764211 11111367899999999765543
No 146
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.43 E-value=0.0012 Score=75.81 Aligned_cols=145 Identities=15% Similarity=0.100 Sum_probs=83.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccccccc--ceEEEEEeCcchhH-----------HHHHHhcCcceeeeecCCCCCCh
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSF--ELKIWVCVNEDFNS-----------QLRRLLRGRRYLLVLDDVWNEDH 256 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~-----------~l~~~l~~k~~LlvlDdvw~~~~ 256 (1141)
..+.|+|..|+|||+|++++++.. .... ..+++++..+-... .+.+.+++ .-+||+||+.....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRS-VDLLLIDDIQFLAG 213 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHh-CCEEEEehhhhhcC
Confidence 468899999999999999999843 2222 23556665431111 11222222 34899999953211
Q ss_pred H-HH-HHHHHhccCC-CCCcEEEEEcCch--H-------HHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcch
Q 001145 257 E-EW-DKLRVSLSDG-AEGSRVIVTTRSA--K-------VATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLP 324 (1141)
Q Consensus 257 ~-~~-~~l~~~l~~~-~~gs~ilvTtr~~--~-------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~ 324 (1141)
. .+ +.+...+... ..|..+|+|+... . +...+.....+.+.+.+.++..+++.+.+-... ..--.+
T Consensus 214 ~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e 291 (405)
T TIGR00362 214 KERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG--LELPDE 291 (405)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHH
Confidence 1 12 2233322211 2345678877642 1 222233334688999999999999998874321 122245
Q ss_pred hhHHHHhhcCCchhH
Q 001145 325 VGKEIVKKCGGIPLA 339 (1141)
Q Consensus 325 ~~~~i~~~~~g~Pla 339 (1141)
+..-|++.+.|..-.
T Consensus 292 ~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 292 VLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHhcCCCHHH
Confidence 677788888876654
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.39 E-value=0.00075 Score=84.30 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=84.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc---cccc-cceEEEEEe-C-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK---VTKS-FELKIWVCV-N------- 228 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~~~-f~~~~wv~~-~------- 228 (1141)
..++||+++++++++.|... ...-+.++|++|+|||++|+.++.... +... -+..+|..- +
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~ 251 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTK 251 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCC
Confidence 45899999999999999765 223456999999999999999877421 1111 123444321 1
Q ss_pred --cchhHHHHHHh----cCcceeeeecCCCCC--------ChHHHHHHHHhccCCCCCcEEEEEcCchHHHHh-------
Q 001145 229 --EDFNSQLRRLL----RGRRYLLVLDDVWNE--------DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATI------- 287 (1141)
Q Consensus 229 --~~~~~~l~~~l----~~k~~LlvlDdvw~~--------~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~------- 287 (1141)
.++...+++.+ ..++.++++|++..- ....-..++..+..+ .-++|-+|...+....
T Consensus 252 ~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ey~~~ie~D~aL 329 (821)
T CHL00095 252 YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLDEYRKHIEKDPAL 329 (821)
T ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHHHHHHHHhcCHHH
Confidence 12333444443 456899999998310 111122344334332 2345555555443221
Q ss_pred hCCCCceeCCCCCHHHHHHHHhhc
Q 001145 288 VGTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 288 ~~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
......+.+...+.++...+++..
T Consensus 330 ~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 330 ERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcceEEecCCCCHHHHHHHHHHH
Confidence 122346788888999988887653
No 148
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.38 E-value=0.00047 Score=65.26 Aligned_cols=85 Identities=25% Similarity=0.232 Sum_probs=50.1
Q ss_pred EEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch-------hHH----HHHHhcCc-ceeeeecCCCCCChHH-
Q 001145 192 IPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF-------NSQ----LRRLLRGR-RYLLVLDDVWNEDHEE- 258 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-------~~~----l~~~l~~k-~~LlvlDdvw~~~~~~- 258 (1141)
|.|+|++|+||||+|+.+++... ++ .+.+..+.-. ... +.+.-+.. +.++++||+..-....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~-~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FP-FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SE-EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----cc-cccccccccccccccccccccccccccccccccceeeeeccchhcccccc
Confidence 57999999999999999998432 21 3444443322 112 33332333 8999999984322222
Q ss_pred ----------HHHHHHhccCCC---CCcEEEEEcCc
Q 001145 259 ----------WDKLRVSLSDGA---EGSRVIVTTRS 281 (1141)
Q Consensus 259 ----------~~~l~~~l~~~~---~gs~ilvTtr~ 281 (1141)
...+...+.... .+..||.||..
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccccceeeecccccccccccceeEEeeCC
Confidence 344555554433 23566667765
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=6.2e-05 Score=76.12 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=131.2
Q ss_pred CCCCccCeeecccccccc--cccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCC-CCcccccCCCCC
Q 001145 918 GCLVALKSLTIRWCQELI--ALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENL-AYIPRGLGHLIA 994 (1141)
Q Consensus 918 ~~~~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l-~~l~~~~~~l~~ 994 (1141)
..++.++.|+|.+|.+.. .+...+.++|.|+.|+|+.|+....+...-....+|++|.|.+.... ......+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456778889999888765 34445778999999999998865443321124568999999874332 122335677888
Q ss_pred ccEEeecCCCCCcc--cCcCcc-ccCCcceEEecCCCCcc--cccccCCCCCCcCeEeeccCCCCccc-CcCCCCCCCcC
Q 001145 995 LEHLTIMYCPSLAF--LPENFR-NLTMLKSLCILSCPELA--SLPDELQHVTTLQSLEIHSCPAFKDL-PEWIGNLSSLT 1068 (1141)
Q Consensus 995 L~~L~l~~~~~~~~--~~~~~~-~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~l-p~~l~~l~~L~ 1068 (1141)
+++|+++.|..... ...... .-+.+++|++.+|.... ..-..-.-+|++..+-+..|++-+.- ......++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 89999998843211 111111 23357777777765421 01111124578888899998864322 24566788888
Q ss_pred EEeeccCCCcc-ccCCCCCCCCCcceEeccCCcchHHhhccCCCCCccceeccceeeeC
Q 001145 1069 SLTISDCHTII-SLPANLQHLTTLQHLSIRECPRLESRCKKYVGEDWLKVAHIPHTYIG 1126 (1141)
Q Consensus 1069 ~L~l~~n~~~~-~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~i~~i~~~~~~ 1126 (1141)
.|+|+.+.+-. .--+.+..+++|..|.+.++|-... .+. ......-|+++|++.+-
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~-l~~-~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP-LRG-GERRFLLIARLTKVQVL 284 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccccc-ccC-CcceEEEEeeccceEEe
Confidence 88898876532 1223467789999999999986542 222 23345667888877764
No 150
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0038 Score=68.40 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=94.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccc-------------------cccceEEEEEeC---cchh-HHHHH---Hh--
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVT-------------------KSFELKIWVCVN---EDFN-SQLRR---LL-- 239 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~---~~~~-~~l~~---~l-- 239 (1141)
-.+.+.++|+.|+||||+|+.+....-.. +...-..|+... +... ..+++ .+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 45678899999999999998886532111 111223444332 1111 12222 22
Q ss_pred ---cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-hCCCCceeCCCCCHHHHHHHHhhcccC
Q 001145 240 ---RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-VGTIPPYYLKGLSHDDCWTLFKQRAFA 314 (1141)
Q Consensus 240 ---~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~ 314 (1141)
.+++-++|+|++..........+...+.....++.+|++|.+. .+... .+.-..+.+.+++.+++.+.+.... .
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~ 179 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P 179 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c
Confidence 3455566789998777788888888887655667777777664 33322 2334578999999999998887653 1
Q ss_pred CCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 315 PGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 315 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
. ...+.+..++..++|.|..+..+
T Consensus 180 ~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 E-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred c-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 1 11233567788999999766554
No 151
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.33 E-value=0.00016 Score=73.32 Aligned_cols=48 Identities=31% Similarity=0.399 Sum_probs=32.2
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
+||||+++.+++...+. .. .....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA---QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT---SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH---HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995 21 12245899999999999999999998743
No 152
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.00095 Score=76.67 Aligned_cols=145 Identities=15% Similarity=0.089 Sum_probs=84.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccc-cc-eEEEEEeCcchhHHH------------HHHhcCcceeeeecCCCCC-
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKS-FE-LKIWVCVNEDFNSQL------------RRLLRGRRYLLVLDDVWNE- 254 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~l------------~~~l~~k~~LlvlDdvw~~- 254 (1141)
.-+.|+|.+|+|||+||+++++. +... .. .++|++..+ +...+ .+..+.+.-++++||+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~~~-f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEK-FLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEHHH-HHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc
Confidence 35899999999999999999984 3222 22 356666543 22211 2222234558999999532
Q ss_pred ChHHH-HHHHHhccC-CCCCcEEEEEcC-chH--------HHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcc
Q 001145 255 DHEEW-DKLRVSLSD-GAEGSRVIVTTR-SAK--------VATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFL 323 (1141)
Q Consensus 255 ~~~~~-~~l~~~l~~-~~~gs~ilvTtr-~~~--------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~ 323 (1141)
+...+ +.+...+.. ...|..||+||. ... +...+.....+.+++.+.++-.+++++.+-... ..--.
T Consensus 208 ~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~--~~l~~ 285 (440)
T PRK14088 208 GKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH--GELPE 285 (440)
T ss_pred CcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC--CCCCH
Confidence 11112 223222211 123456888874 321 112233445788999999999999988863221 11224
Q ss_pred hhhHHHHhhcCCchhH
Q 001145 324 PVGKEIVKKCGGIPLA 339 (1141)
Q Consensus 324 ~~~~~i~~~~~g~Pla 339 (1141)
++..-|++.+.|.--.
T Consensus 286 ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 286 EVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHhccccCHHH
Confidence 5677888888775443
No 153
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.32 E-value=0.002 Score=74.92 Aligned_cols=146 Identities=16% Similarity=0.100 Sum_probs=86.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccccccc--ceEEEEEeCcchhH-----------HHHHHhcCcceeeeecCCCCCCh
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSF--ELKIWVCVNEDFNS-----------QLRRLLRGRRYLLVLDDVWNEDH 256 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~-----------~l~~~l~~k~~LlvlDdvw~~~~ 256 (1141)
.-+.|+|..|+|||+|++++.+. ....+ -.+++++..+-... .+.+.++ +.-+||+||+.....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAG 225 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcC
Confidence 45889999999999999999984 33332 23556655432111 1222222 244899999953211
Q ss_pred -H-HHHHHHHhccC-CCCCcEEEEEcCch--H-------HHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcch
Q 001145 257 -E-EWDKLRVSLSD-GAEGSRVIVTTRSA--K-------VATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLP 324 (1141)
Q Consensus 257 -~-~~~~l~~~l~~-~~~gs~ilvTtr~~--~-------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~ 324 (1141)
. ..+.+...+.. ...|..|++|+... . +...+.....+++++.+.++..+++++.+-... ..--.+
T Consensus 226 ~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e 303 (450)
T PRK00149 226 KERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDE 303 (450)
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHH
Confidence 1 12233332211 11344578877642 1 223344445799999999999999999874321 122335
Q ss_pred hhHHHHhhcCCchhHH
Q 001145 325 VGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 325 ~~~~i~~~~~g~Plai 340 (1141)
+..-|++.+.|..-.+
T Consensus 304 ~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 304 VLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCcCCCHHHH
Confidence 6788888888876543
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.30 E-value=0.0016 Score=65.94 Aligned_cols=104 Identities=25% Similarity=0.306 Sum_probs=65.7
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH---HH
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS---QL 235 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~---~l 235 (1141)
.-+.++|.++.++.|++-...-- .+....-|.+||..|.|||++++++.+...-++ .--|.+..+--. .+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl---~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFL---QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKEDLGDLPEL 97 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHH---cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHHhccHHHH
Confidence 44679999999988875433210 011334678899999999999999987322222 223344433221 34
Q ss_pred HHHh--cCcceeeeecCCCC-CChHHHHHHHHhccCC
Q 001145 236 RRLL--RGRRYLLVLDDVWN-EDHEEWDKLRVSLSDG 269 (1141)
Q Consensus 236 ~~~l--~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~ 269 (1141)
.+.+ +..||+|.+||+-- ........+++.+..+
T Consensus 98 ~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 98 LDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG 134 (249)
T ss_pred HHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc
Confidence 4444 45699999999843 2345577777777643
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0015 Score=75.95 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=83.8
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHhcC-----------cceeeeecCCCCCC-hHH
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLLRG-----------RRYLLVLDDVWNED-HEE 258 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l~~-----------k~~LlvlDdvw~~~-~~~ 258 (1141)
.+.|+|..|+|||.|++++++.......-..+++++..+ +...+...+.. +-=+|||||+.... ...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee-f~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE-FTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 489999999999999999998422111112345665543 22211111111 12389999995432 123
Q ss_pred HH-HHHHhccCC-CCCcEEEEEcCch---------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhH
Q 001145 259 WD-KLRVSLSDG-AEGSRVIVTTRSA---------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGK 327 (1141)
Q Consensus 259 ~~-~l~~~l~~~-~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 327 (1141)
|. .+...+... ..|..|||||... .+...+...-.+.+...+.+...+++.+++-...- .--.++..
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l--~l~~eVi~ 472 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL--NAPPEVLE 472 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC--CCCHHHHH
Confidence 33 232222211 2355688888752 23334455568999999999999999988743221 12234666
Q ss_pred HHHhhcCCchh
Q 001145 328 EIVKKCGGIPL 338 (1141)
Q Consensus 328 ~i~~~~~g~Pl 338 (1141)
-|++++.+..-
T Consensus 473 yLa~r~~rnvR 483 (617)
T PRK14086 473 FIASRISRNIR 483 (617)
T ss_pred HHHHhccCCHH
Confidence 67777665543
No 156
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.29 E-value=0.0015 Score=74.00 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=84.5
Q ss_pred CccccchHHHHHHHHHHHhCCCC------CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch---
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS------GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--- 231 (1141)
.++.|.+..+++|.+.+.-.-.. -+-...+-|.++|++|+|||++|+++++. ....|- .+..++-+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~fi---~V~~seL~~k~ 257 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATFL---RVVGSELIQKY 257 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCEE---EEecchhhhhh
Confidence 45789999988888776421000 01123457889999999999999999983 333342 12211111
Q ss_pred ----hHHHH----HHhcCcceeeeecCCCCC-----------ChHHHHHH---HHhccC--CCCCcEEEEEcCchHHH-H
Q 001145 232 ----NSQLR----RLLRGRRYLLVLDDVWNE-----------DHEEWDKL---RVSLSD--GAEGSRVIVTTRSAKVA-T 286 (1141)
Q Consensus 232 ----~~~l~----~~l~~k~~LlvlDdvw~~-----------~~~~~~~l---~~~l~~--~~~gs~ilvTtr~~~v~-~ 286 (1141)
...++ ......+.++++|++..- +......+ ...+.. ...+.+||.||...... .
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 01122 233467789999997310 01111112 222211 12356788888754333 2
Q ss_pred hhC----CCCceeCCCCCHHHHHHHHhhcc
Q 001145 287 IVG----TIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 287 ~~~----~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.+- ....+++...+.++..++|..+.
T Consensus 338 aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 338 ALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred HhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 221 23468899999999999998775
No 157
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.28 E-value=0.0024 Score=72.26 Aligned_cols=110 Identities=22% Similarity=0.269 Sum_probs=74.2
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH---------HHHHHhcCcceeeeecCCCCCChHHHHH
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS---------QLRRLLRGRRYLLVLDDVWNEDHEEWDK 261 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~---------~l~~~l~~k~~LlvlDdvw~~~~~~~~~ 261 (1141)
++.|.|+-++||||+++.+..... .. .+++...+.... .+.+.-..++..++||.|. ....|..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq--~v~~W~~ 111 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQ--NVPDWER 111 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEeccc--CchhHHH
Confidence 999999999999999977765321 11 455544332111 1222222377899999994 5678999
Q ss_pred HHHhccCCCCCcEEEEEcCchHHH-----Hh-hCCCCceeCCCCCHHHHHHHH
Q 001145 262 LRVSLSDGAEGSRVIVTTRSAKVA-----TI-VGTIPPYYLKGLSHDDCWTLF 308 (1141)
Q Consensus 262 l~~~l~~~~~gs~ilvTtr~~~v~-----~~-~~~~~~~~l~~l~~~~~~~lf 308 (1141)
....+.+..+. +|++|+-+.... .. .|....+++.||+-.|...+-
T Consensus 112 ~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 112 ALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred HHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 88888876666 899988875433 22 234457899999999886643
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.001 Score=80.85 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=84.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc---ccc-ccceEEEEEe---------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK---VTK-SFELKIWVCV--------- 227 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~~-~f~~~~wv~~--------- 227 (1141)
+.++||+++++++++.|... ...-+.++|.+|+|||++|+.++.... +.. -.++.+|..-
T Consensus 186 ~~liGR~~ei~~~i~iL~r~-------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~ 258 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR-------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK 258 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc-------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccc
Confidence 35899999999999988864 122456899999999999999886321 111 1234444321
Q ss_pred -CcchhHHHHHHh----cCcceeeeecCCCC--------CChHHHHH-HHHhccCCCCCcEEEEEcCchHHHHh------
Q 001145 228 -NEDFNSQLRRLL----RGRRYLLVLDDVWN--------EDHEEWDK-LRVSLSDGAEGSRVIVTTRSAKVATI------ 287 (1141)
Q Consensus 228 -~~~~~~~l~~~l----~~k~~LlvlDdvw~--------~~~~~~~~-l~~~l~~~~~gs~ilvTtr~~~v~~~------ 287 (1141)
..++...++..+ +.++.+|++|++.. ....+... ++..+.. + .-++|-+|...+....
T Consensus 259 ~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g-~i~vIgATt~~E~~~~~~~D~A 336 (758)
T PRK11034 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-G-KIRVIGSTTYQEFSNIFEKDRA 336 (758)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-C-CeEEEecCChHHHHHHhhccHH
Confidence 112333333332 45678999999942 11122222 3333332 2 2344545544332211
Q ss_pred -hCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 288 -VGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 288 -~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
...-..+.+...+.+++.++++...
T Consensus 337 L~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 337 LARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1222478899999999999988653
No 159
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00025 Score=69.64 Aligned_cols=60 Identities=22% Similarity=0.401 Sum_probs=42.3
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccc-cccceEE----EEEeCcc-hhHHHHHHhcCcceeeeecCCC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVT-KSFELKI----WVCVNED-FNSQLRRLLRGRRYLLVLDDVW 252 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~----wv~~~~~-~~~~l~~~l~~k~~LlvlDdvw 252 (1141)
.|.|+|++|+||||||+.+++...+. -+||..+ |..++++ +...+.+.+++.. .|+|+.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~--wVidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDE--WIIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCC--EEEeCCc
Confidence 58899999999999999999865444 4677777 5555543 2334555566655 4778874
No 160
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.21 E-value=4.9e-05 Score=67.74 Aligned_cols=81 Identities=26% Similarity=0.287 Sum_probs=39.1
Q ss_pred CCcccEEEccCCCCcccccccccc-ccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEe
Q 001145 540 FRYLRTLNLSGSGIKKLHSSISCL-ISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMI 618 (1141)
Q Consensus 540 l~~Lr~L~L~~~~l~~lp~~i~~L-~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 618 (1141)
...|...+|++|.+..+|..|... +.+..|+|++|.|.++|.++..++.|+.|+++.|. +...|..|..|.+|-.|+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 334444455555555554444222 24455555555555555555555555555555443 4444444444555555554
Q ss_pred cCc
Q 001145 619 YGC 621 (1141)
Q Consensus 619 ~~~ 621 (1141)
.++
T Consensus 131 ~~n 133 (177)
T KOG4579|consen 131 PEN 133 (177)
T ss_pred CCC
Confidence 443
No 161
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0037 Score=69.41 Aligned_cols=177 Identities=20% Similarity=0.267 Sum_probs=99.0
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-cccceEEEEEeCcchh--------
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-KSFELKIWVCVNEDFN-------- 232 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~-------- 232 (1141)
.+.+|+++++++...|.+.-.. ..+.-+.|+|.+|+|||+.++.|+...+.. ...+ +++|.+-....
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 4889999999999988765211 233348999999999999999998842221 1111 44444321111
Q ss_pred ------------------HHHHHHh--cCcceeeeecCCCCCChHHHHHHHHhccCCCC-CcEEEE--EcCchHHHHh--
Q 001145 233 ------------------SQLRRLL--RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAE-GSRVIV--TTRSAKVATI-- 287 (1141)
Q Consensus 233 ------------------~~l~~~l--~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~-gs~ilv--Ttr~~~v~~~-- 287 (1141)
..+.+.+ .++.+++|||++..-....-+.+...+..... .++|++ .+-+......
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 1334444 46789999999843211111333333332222 344333 3333322222
Q ss_pred ------hCCCCceeCCCCCHHHHHHHHhhcc---cCCCCCCcCcchhhHHHHhhcCC-chhHHHHH
Q 001145 288 ------VGTIPPYYLKGLSHDDCWTLFKQRA---FAPGEEYLNFLPVGKEIVKKCGG-IPLAAKAL 343 (1141)
Q Consensus 288 ------~~~~~~~~l~~l~~~~~~~lf~~~~---~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 343 (1141)
.+. ..+...+-+.+|-...+..++ |......+...+.+..++..-+| .=.|+..+
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222 246788889999888888764 33344444444445555555554 33455544
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.20 E-value=0.0014 Score=82.07 Aligned_cols=142 Identities=15% Similarity=0.254 Sum_probs=81.3
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc----cccceEEEEE-eC-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT----KSFELKIWVC-VN------- 228 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~-~~------- 228 (1141)
+.++||+.+++++++.|... ....+.++|++|+|||++|+.+.....-. ......+|.. ++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~ 245 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAK 245 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcch
Confidence 45899999999999999764 22345689999999999999987742110 0112334432 11
Q ss_pred --cchhHHHHHHh----c-CcceeeeecCCCCCC--------hHHHHHHHHhccCCCCCcEEEEEcCchHHHHh------
Q 001145 229 --EDFNSQLRRLL----R-GRRYLLVLDDVWNED--------HEEWDKLRVSLSDGAEGSRVIVTTRSAKVATI------ 287 (1141)
Q Consensus 229 --~~~~~~l~~~l----~-~k~~LlvlDdvw~~~--------~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~------ 287 (1141)
.++...+++.+ + +++.+|++|++..-. .+..+.++..+.. + .-++|-+|........
T Consensus 246 ~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g-~i~~IgaTt~~e~r~~~~~d~a 323 (852)
T TIGR03346 246 YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-G-ELHCIGATTLDEYRKYIEKDAA 323 (852)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-C-ceEEEEeCcHHHHHHHhhcCHH
Confidence 12222344433 2 468999999985211 1112223322221 1 1344444444333211
Q ss_pred -hCCCCceeCCCCCHHHHHHHHhhc
Q 001145 288 -VGTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 288 -~~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
...-..+.+...+.++...++...
T Consensus 324 l~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 324 LERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 122236788888999999988765
No 163
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.18 E-value=0.00063 Score=74.37 Aligned_cols=40 Identities=23% Similarity=0.093 Sum_probs=33.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED 230 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 230 (1141)
..++|+|++|+|||||++.+++.... ++|+..+|+.+.++
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgE 208 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDE 208 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCC
Confidence 37899999999999999999985433 37999999998854
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.17 E-value=0.0012 Score=67.70 Aligned_cols=110 Identities=23% Similarity=0.311 Sum_probs=69.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC----c-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN----E------- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~------- 229 (1141)
..+.+|......+..++.+. .+|.+.|.+|.|||+||.++..+.-..+.|+..+-+... +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~---------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK---------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC---------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 34677888888888888653 289999999999999999987643223445543333211 1
Q ss_pred chhH--------------------HHHH---------------HhcCcce---eeeecCCCCCChHHHHHHHHhccCCCC
Q 001145 230 DFNS--------------------QLRR---------------LLRGRRY---LLVLDDVWNEDHEEWDKLRVSLSDGAE 271 (1141)
Q Consensus 230 ~~~~--------------------~l~~---------------~l~~k~~---LlvlDdvw~~~~~~~~~l~~~l~~~~~ 271 (1141)
+... .+.+ +++++.+ ++|+|++.+-+..+... .+...+.
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~---~ltR~g~ 202 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKM---FLTRLGE 202 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHH---HHhhcCC
Confidence 0000 1111 2344444 89999997655544444 4455568
Q ss_pred CcEEEEEcCch
Q 001145 272 GSRVIVTTRSA 282 (1141)
Q Consensus 272 gs~ilvTtr~~ 282 (1141)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999986543
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.15 E-value=0.00066 Score=72.25 Aligned_cols=88 Identities=30% Similarity=0.323 Sum_probs=52.7
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH--------------HHHHHhcCcceeeeecCCCCCCh
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS--------------QLRRLLRGRRYLLVLDDVWNEDH 256 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--------------~l~~~l~~k~~LlvlDdvw~~~~ 256 (1141)
-+.++|.+|+|||.||.++++.. ..+-..++++++++-+.. .+.+.+.+- =||||||+..+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~-dlLviDDlg~e~~ 192 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA-DLLILDDLGAERD 192 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC-CEEEEecccCCCC
Confidence 58899999999999999999843 222334566665431111 122233333 3899999954433
Q ss_pred HHHHH--HHHhccCC-CCCcEEEEEcCc
Q 001145 257 EEWDK--LRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 257 ~~~~~--l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
.+|.. +...+... ..|..+||||..
T Consensus 193 t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 193 TEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44543 33333221 245679999865
No 166
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0076 Score=66.63 Aligned_cols=143 Identities=11% Similarity=0.138 Sum_probs=90.1
Q ss_pred cccc-chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc--------------------cccc
Q 001145 162 EVVG-REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT--------------------KSFE 220 (1141)
Q Consensus 162 ~~vg-r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~ 220 (1141)
.++| -+..++.+...+... .-.+...++|+.|+||||+|+.+.+..-.. .|-|
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 4667 566667777776543 234577999999999999998885421111 1223
Q ss_pred eEEEEEe-Ccchh-HHH---HHH-----hcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-h
Q 001145 221 LKIWVCV-NEDFN-SQL---RRL-----LRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-V 288 (1141)
Q Consensus 221 ~~~wv~~-~~~~~-~~l---~~~-----l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~ 288 (1141)
. .++.. +.... ..+ .+. ..+++-++|+|++..........+...+.....++.+|++|... .+... .
T Consensus 80 ~-~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 80 V-HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred E-EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 2 22222 11111 122 222 23556689999997666677788888888767777777777653 33322 2
Q ss_pred CCCCceeCCCCCHHHHHHHHhhc
Q 001145 289 GTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 289 ~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
.....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 33457999999999998888653
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.13 E-value=0.0029 Score=78.94 Aligned_cols=143 Identities=15% Similarity=0.229 Sum_probs=80.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc---c-ccceEEEE-EeCc------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT---K-SFELKIWV-CVNE------ 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv-~~~~------ 229 (1141)
+.++||+.+++++++.|... ....+.++|.+|+||||+|+.+.....-. . -....+|. ..+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~ 250 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK 250 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc
Confidence 45899999999999999765 22356699999999999999988732100 0 01223332 2221
Q ss_pred ---chhHHHHHHh-----cCcceeeeecCCCCCC--------hHHHHHHHHhccCCCCCcEEEEEcCchHHHHh------
Q 001145 230 ---DFNSQLRRLL-----RGRRYLLVLDDVWNED--------HEEWDKLRVSLSDGAEGSRVIVTTRSAKVATI------ 287 (1141)
Q Consensus 230 ---~~~~~l~~~l-----~~k~~LlvlDdvw~~~--------~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~------ 287 (1141)
++...+++.+ .+++.++++|++..-. .+.-+.++..+..+ .-++|-||...+....
T Consensus 251 ~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt~~e~r~~~~~d~a 328 (857)
T PRK10865 251 YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATTLDEYRQYIEKDAA 328 (857)
T ss_pred hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCCCHHHHHHhhhcHH
Confidence 2222344433 2468999999984311 01122333333322 2345555544433211
Q ss_pred -hCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 288 -VGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 288 -~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
...-..+.+..-+.++...+++...
T Consensus 329 l~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 329 LERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1112245666668888888876543
No 168
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.13 E-value=0.00057 Score=68.27 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-----------
Q 001145 165 GREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS----------- 233 (1141)
Q Consensus 165 gr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~----------- 233 (1141)
.+..+....++.|... .+|.+.|++|.|||.||.+..-+.-..+.|+..+++...-+...
T Consensus 4 p~~~~Q~~~~~al~~~---------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN---------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred CCCHHHHHHHHHHHhC---------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 4555666777777743 38999999999999999888765545578888877753211100
Q ss_pred --------------------HHHH-------------HhcCc---ceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE
Q 001145 234 --------------------QLRR-------------LLRGR---RYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV 277 (1141)
Q Consensus 234 --------------------~l~~-------------~l~~k---~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv 277 (1141)
.+.. +++|+ ...+|+|++.+-...++..+ +...+.||||++
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~ 151 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIII 151 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEE
Confidence 1111 23343 35899999966555555554 555678999999
Q ss_pred EcCch
Q 001145 278 TTRSA 282 (1141)
Q Consensus 278 Ttr~~ 282 (1141)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 96543
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.12 E-value=0.0029 Score=71.15 Aligned_cols=169 Identities=17% Similarity=0.083 Sum_probs=92.4
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch---
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--- 231 (1141)
.++.|.+..+++|.+.+.-.-. ..+-..++-|.++|++|.|||++|+++++.. ...| +.+..++-.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~s~l~~k~ 219 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVGSEFVQKY 219 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEehHHHHHHh
Confidence 4688999888888776542100 0011245678999999999999999999842 2233 122111100
Q ss_pred ----hHHHH----HHhcCcceeeeecCCCCC-----------ChHH---HHHHHHhccC--CCCCcEEEEEcCchHHH-H
Q 001145 232 ----NSQLR----RLLRGRRYLLVLDDVWNE-----------DHEE---WDKLRVSLSD--GAEGSRVIVTTRSAKVA-T 286 (1141)
Q Consensus 232 ----~~~l~----~~l~~k~~LlvlDdvw~~-----------~~~~---~~~l~~~l~~--~~~gs~ilvTtr~~~v~-~ 286 (1141)
...++ ......+.++++|++..- +... +..+...+.. ...+..||.||...+.. .
T Consensus 220 ~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 220 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 11222 233567889999997321 1111 1122222221 12456778887654322 2
Q ss_pred hh-C---CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV-G---TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~-~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+ . -...+++...+.++..++|+.+.-. ....+. .-..++++...|.-
T Consensus 300 AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 300 ALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred HHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcc--cCHHHHHHHcCCCC
Confidence 22 1 2346888888999988888866422 111111 12356666666654
No 170
>PHA00729 NTP-binding motif containing protein
Probab=97.11 E-value=0.0022 Score=64.78 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=58.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccc-----------cccceEEEEEeCcchhHHHHHHhcC-cc-eeeeecCC--C
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVT-----------KSFELKIWVCVNEDFNSQLRRLLRG-RR-YLLVLDDV--W 252 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-----------~~f~~~~wv~~~~~~~~~l~~~l~~-k~-~LlvlDdv--w 252 (1141)
+...|.|.|.+|+||||||..+.+..... .....+.++.+ ++....++...++ .+ =++|+||+ |
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~-~~Ll~~L~~a~~~~~~~dlLIIDd~G~~ 94 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFEL-PDALEKIQDAIDNDYRIPLIIFDDAGIW 94 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEH-HHHHHHHHHHHhcCCCCCEEEEeCCchh
Confidence 45578999999999999999998742100 01112333333 2233344444433 22 37899994 5
Q ss_pred CCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhh-CCCCceeCCCCCHHHHHHHHhhccc
Q 001145 253 NEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIV-GTIPPYYLKGLSHDDCWTLFKQRAF 313 (1141)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~ 313 (1141)
-. ...|..- .. +-.-.+...+ .....+.+.++++++..+.++.+..
T Consensus 95 ~~-~~~wh~~-----------~~---~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 95 LS-KYVWYED-----------YM---KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred hc-ccchhhh-----------cc---chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 32 2224410 00 0001111111 1233566777788888888887654
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.09 E-value=0.0023 Score=79.51 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=74.3
Q ss_pred cCccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc--------
Q 001145 160 ESEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-------- 229 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-------- 229 (1141)
...++|.+..++.+.+.+..... ...+....++.++|+.|+|||.+|+.+... .-+.....+-+..++
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhhhhc
Confidence 35789999999999988864311 111234568899999999999999887652 111111111112111
Q ss_pred ------------chhHHHHHHhcCc-ceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 230 ------------DFNSQLRRLLRGR-RYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 230 ------------~~~~~l~~~l~~k-~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
+-...+.+.++.+ .-+|+||++...++..++.+...+..+. ..+-||+||.-
T Consensus 643 ~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 0011345555444 4699999997767777877777776543 44566777654
No 172
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.06 E-value=0.00013 Score=87.60 Aligned_cols=131 Identities=20% Similarity=0.099 Sum_probs=73.4
Q ss_pred CccCeeecccccccccc-ccc-ccCCCCCCEEeEccCCCCcc-ccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccE
Q 001145 921 VALKSLTIRWCQELIAL-PQE-IQNLSLLESLEISECHSLTV-LPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEH 997 (1141)
Q Consensus 921 ~~L~~L~L~~~~~~~~l-~~~-l~~l~~L~~L~Ls~~~~l~~-~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 997 (1141)
.+|++|++++......- |.. -..||+|+.|.+++-..... +.....++|+|..|++++++.... .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46788888775433211 111 23478888888887543322 222445678888888888665543 46777788888
Q ss_pred EeecCCCCCc-ccCcCccccCCcceEEecCCCCcccc------cccCCCCCCcCeEeeccCCC
Q 001145 998 LTIMYCPSLA-FLPENFRNLTMLKSLCILSCPELASL------PDELQHVTTLQSLEIHSCPA 1053 (1141)
Q Consensus 998 L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~------~~~l~~l~~L~~L~l~~n~~ 1053 (1141)
|.+.+-++.. ..-..+.++++|+.||+|........ -+.-..+|.|+.||.|+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 7777655432 11123456777777777765443211 11222345555555555443
No 173
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.00072 Score=71.39 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=50.2
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH--------HHHHHhc--CcceeeeecCCCCCChHHH-
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS--------QLRRLLR--GRRYLLVLDDVWNEDHEEW- 259 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--------~l~~~l~--~k~~LlvlDdvw~~~~~~~- 259 (1141)
.+.++|++|+|||.||.++.+. .......++|+++.+-+.. ...+.++ .+-=|||+||+.......|
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~ 185 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAE 185 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHH
Confidence 5899999999999999999873 2222334567665432211 0111111 2345999999953322222
Q ss_pred -HHHHHhccCCCCCcEEEEEcCch
Q 001145 260 -DKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 260 -~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
..+...+.....+..+||||...
T Consensus 186 ~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 186 TSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCC
Confidence 23333333211223588888753
No 174
>PRK12377 putative replication protein; Provisional
Probab=97.02 E-value=0.0018 Score=67.54 Aligned_cols=89 Identities=24% Similarity=0.172 Sum_probs=52.3
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHH----------Hhc--CcceeeeecCCCCCChH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRR----------LLR--GRRYLLVLDDVWNEDHE 257 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~----------~l~--~k~~LlvlDdvw~~~~~ 257 (1141)
..+.++|.+|+|||+||.++.+.. ......++++++.+-.. .++. .++ .+--||||||+-.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~~l~~-~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVPDVMS-RLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRET 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHHHHHH-HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC
Confidence 478999999999999999999843 33334467777754222 1211 111 34458999999443333
Q ss_pred HHH--HHHHhccCC-CCCcEEEEEcCc
Q 001145 258 EWD--KLRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 258 ~~~--~l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
.|. .+...+... .+.--+||||-.
T Consensus 179 ~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 179 KNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 343 343333322 122347777754
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.003 Score=74.97 Aligned_cols=107 Identities=26% Similarity=0.379 Sum_probs=74.4
Q ss_pred CccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh------
Q 001145 161 SEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN------ 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~------ 232 (1141)
..++|.+..++.+.+.+..... ........+...+|+.|||||-||++++.. .-+.=+..+-+..|+-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHHHHHH
Confidence 5689999999999988875421 122345678888999999999999988751 111112333333332211
Q ss_pred --------------HHHHHHhcCcce-eeeecCCCCCChHHHHHHHHhccCC
Q 001145 233 --------------SQLRRLLRGRRY-LLVLDDVWNEDHEEWDKLRVSLSDG 269 (1141)
Q Consensus 233 --------------~~l~~~l~~k~~-LlvlDdvw~~~~~~~~~l~~~l~~~ 269 (1141)
..+.+..+.++| ++.||+|....++-.+.+...+.++
T Consensus 569 LIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 569 LIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 168888899988 8889999777777788888877765
No 176
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.97 E-value=0.00011 Score=65.65 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecC
Q 001145 516 KLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLS 595 (1141)
Q Consensus 516 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 595 (1141)
.|.+.++ +.|.+.+.++.+-..++.++.|+|++|.+.++|..+..++.||.|+++.|.+...|.-|..|.+|-.|+..
T Consensus 54 el~~i~l--s~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISL--SDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEec--ccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 3444454 55556555666556777889999999999999988999999999999999999999999999999999988
Q ss_pred CCCCCcccCcc
Q 001145 596 DCHDLIELPKR 606 (1141)
Q Consensus 596 ~~~~l~~lp~~ 606 (1141)
+|. ...+|-.
T Consensus 132 ~na-~~eid~d 141 (177)
T KOG4579|consen 132 ENA-RAEIDVD 141 (177)
T ss_pred CCc-cccCcHH
Confidence 865 5556654
No 177
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.96 E-value=0.011 Score=69.81 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=89.6
Q ss_pred CccccchHHHHHHHHHHH---hCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-c----
Q 001145 161 SEVVGREEDKEAMIDLLA---SNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-D---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~---~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~---- 230 (1141)
.+++|.+..++++.+.+. .... ..+....+-+.++|++|+|||++|+.+++... .. ++.++. +
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~~~~~~~ 127 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISGSDFVEM 127 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccHHHHHHH
Confidence 468888877666654433 2100 00112345688999999999999999987432 12 222221 1
Q ss_pred --------hhHHHHHHhcCcceeeeecCCCCC----------ChHHHHH----HHHhccC--CCCCcEEEEEcCchH-HH
Q 001145 231 --------FNSQLRRLLRGRRYLLVLDDVWNE----------DHEEWDK----LRVSLSD--GAEGSRVIVTTRSAK-VA 285 (1141)
Q Consensus 231 --------~~~~l~~~l~~k~~LlvlDdvw~~----------~~~~~~~----l~~~l~~--~~~gs~ilvTtr~~~-v~ 285 (1141)
....+.......+.+|++|++..- ....+.. +...+.. ...+..||.||.... +-
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 111233333456789999998321 0112222 2222211 123445666665432 22
Q ss_pred Hhh----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 286 TIV----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 286 ~~~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
..+ .-...+.+...+.++..++|+.+.-..... + ......+++.+.|.-
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFS 260 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCC
Confidence 222 223468889889988888888765322111 1 112357788877743
No 178
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.95 E-value=0.006 Score=70.16 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=84.8
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccc---cccceEEEEEeCcc-
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT---KSFELKIWVCVNED- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~- 230 (1141)
.++.|.+..+++|.+.+.-.-. ..+-..++-+.++|++|.|||++|+++++..... ..+....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 4578899999888877642100 0011234568999999999999999999843211 01122334443311
Q ss_pred --------hhHHHH---HH-----hcCcceeeeecCCCCCC-------hHH-----HHHHHHhccCCC--CCcEEEEEcC
Q 001145 231 --------FNSQLR---RL-----LRGRRYLLVLDDVWNED-------HEE-----WDKLRVSLSDGA--EGSRVIVTTR 280 (1141)
Q Consensus 231 --------~~~~l~---~~-----l~~k~~LlvlDdvw~~~-------~~~-----~~~l~~~l~~~~--~gs~ilvTtr 280 (1141)
....++ +. -.++++++++|+++.-- ..+ ...+...+.... .+..||.||.
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN 341 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN 341 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC
Confidence 011111 11 13478999999994210 011 123333333211 3444555664
Q ss_pred chHHH-Hhh----CCCCceeCCCCCHHHHHHHHhhcc
Q 001145 281 SAKVA-TIV----GTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 281 ~~~v~-~~~----~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
..... ..+ .-...+++...+.++..++|.++.
T Consensus 342 ~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 342 REDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 43322 222 123368999999999999999876
No 179
>CHL00176 ftsH cell division protein; Validated
Probab=96.95 E-value=0.0073 Score=72.10 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=91.7
Q ss_pred CccccchHHHHHHHHH---HHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-c----
Q 001145 161 SEVVGREEDKEAMIDL---LASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-D---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~---l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~---- 230 (1141)
.+++|.++.++++.+. +..... .-+....+-|.++|++|+|||++|+++++... .. ++.++. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~s~f~~~ 255 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISGSEFVEM 255 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccHHHHHHH
Confidence 4578887666665544 333210 00112345689999999999999999987432 11 222221 1
Q ss_pred --------hhHHHHHHhcCcceeeeecCCCCC----------ChHHHH----HHHHhccC--CCCCcEEEEEcCchHH-H
Q 001145 231 --------FNSQLRRLLRGRRYLLVLDDVWNE----------DHEEWD----KLRVSLSD--GAEGSRVIVTTRSAKV-A 285 (1141)
Q Consensus 231 --------~~~~l~~~l~~k~~LlvlDdvw~~----------~~~~~~----~l~~~l~~--~~~gs~ilvTtr~~~v-~ 285 (1141)
....+.+.....+++|++||+..- ....+. .+...+.. ...+..||.||...+. .
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 111344445677899999999421 011222 22222221 2345566667765433 2
Q ss_pred Hhh----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC
Q 001145 286 TIV----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG 335 (1141)
Q Consensus 286 ~~~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 335 (1141)
..+ .-...+.+...+.++..++++.++-... . ........+++.+.|
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~--~~d~~l~~lA~~t~G 386 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-L--SPDVSLELIARRTPG 386 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-c--chhHHHHHHHhcCCC
Confidence 222 1234678888899999999988763311 1 111234667777777
No 180
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.94 E-value=0.0022 Score=69.45 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHH--------
Q 001145 165 GREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLR-------- 236 (1141)
Q Consensus 165 gr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~-------- 236 (1141)
+|........+++..... +...+-+.++|..|+|||.||.++++... ...+ .+.+++++. +-..++
T Consensus 135 ~~~~~~~~~~~fi~~~~~---~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~~-l~~~lk~~~~~~~~ 208 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP---GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFPE-FIRELKNSISDGSV 208 (306)
T ss_pred HHHHHHHHHHHHHHHhhc---cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHHH-HHHHHHHHHhcCcH
Confidence 455555555666654311 11335789999999999999999998432 2233 356666643 212221
Q ss_pred -HHh--cCcceeeeecCCCCCChHHHHH--HHHhc-cCC-CCCcEEEEEcCc
Q 001145 237 -RLL--RGRRYLLVLDDVWNEDHEEWDK--LRVSL-SDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 237 -~~l--~~k~~LlvlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtr~ 281 (1141)
+.+ -.+-=||||||+-.+...+|.. +...+ ... ..+-.+|+||--
T Consensus 209 ~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 209 KEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 111 1245589999997665667753 44433 222 245568888864
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.92 E-value=0.0034 Score=61.52 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=59.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-----HH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS-----QL 235 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-----~l 235 (1141)
.++||-++.++++.-.-.+. +..-+.|.||+|+||||-+..+++..--...=+.+.-..+|++-.. .+
T Consensus 27 ~dIVGNe~tv~rl~via~~g-------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG-------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC-------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 57899999998876655543 5667889999999999988777662111112234445555554322 33
Q ss_pred HHHhc-------CcceeeeecCCCCCChHHHHHHHH
Q 001145 236 RRLLR-------GRRYLLVLDDVWNEDHEEWDKLRV 264 (1141)
Q Consensus 236 ~~~l~-------~k~~LlvlDdvw~~~~~~~~~l~~ 264 (1141)
+.+.+ ++--.+|||...+........+++
T Consensus 100 K~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 100 KMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred HHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHH
Confidence 33322 344578999986554444444443
No 182
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.92 E-value=8.6e-05 Score=88.64 Aligned_cols=195 Identities=23% Similarity=0.332 Sum_probs=96.6
Q ss_pred hcCCCCccEEEEecCCCccccc-cc-cCCCCccCeeecccccc-cc-cccccccCCCCCCEEeEccCCCCcc--ccccCC
Q 001145 893 LENNPCLTSLTISSCPNLRSIS-SK-LGCLVALKSLTIRWCQE-LI-ALPQEIQNLSLLESLEISECHSLTV--LPEGIE 966 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~-~~-~l~~~l~~l~~L~~L~Ls~~~~l~~--~~~~~~ 966 (1141)
...+++|+.|+++++..++..- .. ...+++|+.|.+.+|.. +. .+-.....+++|++|+|++|..... +.....
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 3445777777777776433221 11 22366777777766663 22 1222345567777777777766532 111223
Q ss_pred CCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCc---ccCcCccccCCcceEEecCCCCcccccccCCCCCCc
Q 001145 967 GLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLA---FLPENFRNLTMLKSLCILSCPELASLPDELQHVTTL 1043 (1141)
Q Consensus 967 ~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 1043 (1141)
++++|+.|.+..+.. +..++.+.+.++.... ........+++|+.+.+..+.. .....
T Consensus 319 ~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~-~~~~~-------- 379 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI-SDLGL-------- 379 (482)
T ss_pred hCcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc-cCcch--------
Confidence 355555544433222 3344444444433321 1112344566666666666652 22110
Q ss_pred CeEeeccCCCC-cccCcCCCCCCCcCEEeeccCCCccccCC-CCC-CCCCcceEeccCCcchHHhhc
Q 001145 1044 QSLEIHSCPAF-KDLPEWIGNLSSLTSLTISDCHTIISLPA-NLQ-HLTTLQHLSIRECPRLESRCK 1107 (1141)
Q Consensus 1044 ~~L~l~~n~~~-~~lp~~l~~l~~L~~L~l~~n~~~~~lp~-~~~-~l~~L~~L~l~~c~~L~~~~~ 1107 (1141)
.+.+.+|+.+ ..+........+++.|+++.|.....--- ... .+..+..+++.+|+.+.....
T Consensus 380 -~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 380 -ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred -HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 2333344433 11111122233378888888876543211 111 166788888888887665543
No 183
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.92 E-value=0.0039 Score=70.24 Aligned_cols=141 Identities=15% Similarity=0.264 Sum_probs=81.4
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceE-E-EEEeCcchhH-HHHH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELK-I-WVCVNEDFNS-QLRR 237 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~-wv~~~~~~~~-~l~~ 237 (1141)
..++||++.++.+...+... .-|.|.|++|+|||++|+.+.........|... + +.+.++-+.. .+..
T Consensus 20 ~~i~gre~vI~lll~aalag---------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~ 90 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG---------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQA 90 (498)
T ss_pred hhccCcHHHHHHHHHHHccC---------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhh
Confidence 35899999999998888755 257899999999999999998732222234321 1 1111111110 0111
Q ss_pred ---------HhcC---cceeeeecCCCCCChHHHHHHHHhccCCC---------CCcEEEEEcCchHHHH-------hh-
Q 001145 238 ---------LLRG---RRYLLVLDDVWNEDHEEWDKLRVSLSDGA---------EGSRVIVTTRSAKVAT-------IV- 288 (1141)
Q Consensus 238 ---------~l~~---k~~LlvlDdvw~~~~~~~~~l~~~l~~~~---------~gs~ilvTtr~~~v~~-------~~- 288 (1141)
...+ ..-++++|++|.........+...+.... -..+++|++.++ ... ..
T Consensus 91 ~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE~g~~leAL~D 169 (498)
T PRK13531 91 LKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPEADSSLEALYD 169 (498)
T ss_pred hhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-CcccCCchHHhHh
Confidence 1111 11279999999888877777777763321 123565555442 221 00
Q ss_pred CCCCceeCCCCCHH-HHHHHHhhc
Q 001145 289 GTIPPYYLKGLSHD-DCWTLFKQR 311 (1141)
Q Consensus 289 ~~~~~~~l~~l~~~-~~~~lf~~~ 311 (1141)
.-...+.+.+++++ +-.+++...
T Consensus 170 RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 170 RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred hEEEEEECCCCCchHHHHHHHHcc
Confidence 11225778888754 446777653
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00066 Score=81.61 Aligned_cols=107 Identities=31% Similarity=0.330 Sum_probs=78.4
Q ss_pred hcCCCCcEEeccccCCCC-CCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccc--hhhhcCCC
Q 001145 512 YEAKKLRTLNLLFSKGDL-GEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLP--ESICDLVY 588 (1141)
Q Consensus 512 ~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~ 588 (1141)
..+|.|++|.+ .+..+ .+.....+.+|++|+.||+++++++.+ ..|++|++|+.|.+++-.+..-+ ..+.+|++
T Consensus 145 ~~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 145 TMLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hhCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 45889999986 33222 111234468999999999999999988 78999999999999987776432 56778999
Q ss_pred CcEEecCCCCCCcccCcc-------ccCCCCCcEEEecCcc
Q 001145 589 LQVLNLSDCHDLIELPKR-------LASIFQLRHLMIYGCC 622 (1141)
Q Consensus 589 L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 622 (1141)
|++||+|...... .+.- -..|++||.||.+++.
T Consensus 222 L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 222 LRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 9999999754322 2211 1248899999988874
No 185
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.90 E-value=0.054 Score=67.54 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=38.0
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+.+++|.++.+++|.+++....... .....++.++|++|+|||++|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRG-KMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhc-CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999988765321011 112247999999999999999999874
No 186
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.90 E-value=0.0013 Score=59.13 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=34.6
Q ss_pred EEEEecCcchHHHHHHHHHcCccccccc--ceEEEEEeCcchhHHHHHHhcCcceeeeecCCCCCC
Q 001145 192 IPIVGLGGIGKTTLAQLAYNDEKVTKSF--ELKIWVCVNEDFNSQLRRLLRGRRYLLVLDDVWNED 255 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdvw~~~ 255 (1141)
|-|+|.+|+|||++|+.++.+. ..++ +..-++... ........-.+++ -.+|+||++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l--~~~~~~~~~~~vy~~-~~~~~~w~gY~~q-~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL--LKHIGEPTKDSVYTR-NPGDKFWDGYQGQ-PVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH--HHHhccCCCCcEEeC-CCccchhhccCCC-cEEEEeecCccc
Confidence 4689999999999999987642 2222 111222221 1122233333445 457899997654
No 187
>PRK09183 transposase/IS protein; Provisional
Probab=96.89 E-value=0.0014 Score=69.55 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=48.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH--------HHHHHh---cCcceeeeecCCCCCChHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS--------QLRRLL---RGRRYLLVLDDVWNEDHEE 258 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--------~l~~~l---~~k~~LlvlDdvw~~~~~~ 258 (1141)
..+.|+|++|+|||+||..+.+... ...+ .+.++...+-... .+...+ ..+.-++|+||+.......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~ 180 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ 180 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCCh
Confidence 3678999999999999999976322 1222 2344443321111 111222 2344599999996432222
Q ss_pred HH--HHHHhccCC-CCCcEEEEEcCc
Q 001145 259 WD--KLRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 259 ~~--~l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
+. .+...+... ..++ +||||..
T Consensus 181 ~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 181 EEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred HHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 22 343333221 2344 8888865
No 188
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.88 E-value=0.0072 Score=59.99 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=74.0
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH---HH
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS---QL 235 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~---~l 235 (1141)
.-..++|.+..++.+++-...-- .+..---|.+||..|+||++|++++.+ .+....-. -|.|+.+--. .+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~---~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~dl~~Lp~l 130 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA---EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKEDLATLPDL 130 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH---cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHHHHhhHHHH
Confidence 33568999998888875432210 011234688999999999999999988 34344333 4445443222 44
Q ss_pred HHHh--cCcceeeeecCCCC-CChHHHHHHHHhccCCC---CCcEEEEEcCc
Q 001145 236 RRLL--RGRRYLLVLDDVWN-EDHEEWDKLRVSLSDGA---EGSRVIVTTRS 281 (1141)
Q Consensus 236 ~~~l--~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~~---~gs~ilvTtr~ 281 (1141)
-+.| ..+||.+..||+-- ++......++..+..+- +...++..|.+
T Consensus 131 ~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 131 VELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 5555 46799999999843 34566778888886542 44445555544
No 189
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.87 E-value=0.0047 Score=76.30 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=67.6
Q ss_pred CccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc--------
Q 001145 161 SEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-------- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-------- 230 (1141)
..++|.+..++.|...+..... ........++.++|+.|+|||+||+.++... . ...+.+..++-
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l--~---~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL--G---VHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh--c---CCeEEEeCchhhhcccHHH
Confidence 4588999999998888764311 1111234578999999999999999998732 1 11233332221
Q ss_pred ------------hhHHHHHHhcCcce-eeeecCCCCCChHHHHHHHHhccCC
Q 001145 231 ------------FNSQLRRLLRGRRY-LLVLDDVWNEDHEEWDKLRVSLSDG 269 (1141)
Q Consensus 231 ------------~~~~l~~~l~~k~~-LlvlDdvw~~~~~~~~~l~~~l~~~ 269 (1141)
....+.+.++.+++ +++||++....++.+..+...+..+
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 01135555554444 9999999877778888887777654
No 190
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0041 Score=68.70 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=85.7
Q ss_pred cccCccccchHHHHH-HHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc--eEEEEEeCcchhHH
Q 001145 158 VIESEVVGREEDKEA-MIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE--LKIWVCVNEDFNSQ 234 (1141)
Q Consensus 158 ~~~~~~vgr~~~~~~-l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~ 234 (1141)
..+.-++|-...... +...+.... +.....+.|+|..|.|||.|++++.+ ....... .+++++.. +|...
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~----g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~se-~f~~~ 157 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENP----GGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTSE-DFTND 157 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhcc----CCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccHH-HHHHH
Confidence 345556676544332 333333321 11345899999999999999999998 3444444 23344333 33222
Q ss_pred HHHHhcC----------cceeeeecCCCCCC-hHHHH-HHHHhccCC-CCCcEEEEEcCc---------hHHHHhhCCCC
Q 001145 235 LRRLLRG----------RRYLLVLDDVWNED-HEEWD-KLRVSLSDG-AEGSRVIVTTRS---------AKVATIVGTIP 292 (1141)
Q Consensus 235 l~~~l~~----------k~~LlvlDdvw~~~-~~~~~-~l~~~l~~~-~~gs~ilvTtr~---------~~v~~~~~~~~ 292 (1141)
.-..+++ .-=++++||++.-. .+.|+ .+...+..- ..|..|++|++. +.+...+...-
T Consensus 158 ~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl 237 (408)
T COG0593 158 FVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGL 237 (408)
T ss_pred HHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhcee
Confidence 2122211 33488999995421 12232 222222211 234489999864 23444455566
Q ss_pred ceeCCCCCHHHHHHHHhhccc
Q 001145 293 PYYLKGLSHDDCWTLFKQRAF 313 (1141)
Q Consensus 293 ~~~l~~l~~~~~~~lf~~~~~ 313 (1141)
.+++.+.+.+.....+.+++.
T Consensus 238 ~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 238 VVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred EEeeCCCCHHHHHHHHHHHHH
Confidence 899999999999999988663
No 191
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.85 E-value=0.0061 Score=61.75 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=53.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHH-----------h-------------cCccee
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRL-----------L-------------RGRRYL 245 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~-----------l-------------~~k~~L 245 (1141)
+++.|.|.+|.||||+++.+..... ..=..++++..+......+.+. + ..++-+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~--~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~v 96 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALE--AAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDV 96 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHH--HTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHH--hCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccE
Confidence 4788999999999999999876322 2213345555554444333332 1 123469
Q ss_pred eeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc
Q 001145 246 LVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS 281 (1141)
Q Consensus 246 lvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~ 281 (1141)
+|+|+++--+...+..+...... .|+|+|+.--.
T Consensus 97 liVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 97 LIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp EEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred EEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 99999977676777777776654 57788876433
No 192
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.85 E-value=0.0012 Score=65.36 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=48.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-----------HHHHHhcCcceeeeecCCCCCChH
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS-----------QLRRLLRGRRYLLVLDDVWNEDHE 257 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-----------~l~~~l~~k~~LlvlDdvw~~~~~ 257 (1141)
..-+.++|..|+|||.||.++.+.. +...+ .+.|+.+++=++. .+.+.+. +-=|+||||+-.....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~-~~dlLilDDlG~~~~~ 123 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITASDLLDELKQSRSDGSYEELLKRLK-RVDLLILDDLGYEPLS 123 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH-TSSCEEEETCTSS---
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeecCceeccccccccccchhhhcCccc-cccEecccccceeeec
Confidence 3479999999999999999998732 22222 3677766532221 1222222 3458889999655444
Q ss_pred HHHH--HHHhccCC-CCCcEEEEEcCc
Q 001145 258 EWDK--LRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 258 ~~~~--l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
+|.. +...+... .++ .+||||..
T Consensus 124 ~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 124 EWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccccccchhhhhHhhccc-CeEeeCCC
Confidence 4442 22212111 123 58888875
No 193
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.82 E-value=0.0057 Score=76.77 Aligned_cols=119 Identities=24% Similarity=0.304 Sum_probs=74.1
Q ss_pred CccccchHHHHHHHHHHHhCCCC--CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc--------
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS--GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-------- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~--~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-------- 230 (1141)
..++|.+..++.+.+.+...... .......++.++|+.|+|||++|+.+..... ..-...+.+..+.-
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccchHHH
Confidence 46899999999999988753111 1112346788999999999999999986211 11111122222110
Q ss_pred ------------hhHHHHHHhcCcc-eeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 231 ------------FNSQLRRLLRGRR-YLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 231 ------------~~~~l~~~l~~k~-~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
....+.+.++.++ .+++||++....+..+..+...+..+. ..+-||+||..
T Consensus 643 l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 643 LIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred hcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 0113444444444 489999998777888888888775542 23447777764
No 194
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.033 Score=60.45 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc----------------ccccceEEEEE--eCc
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV----------------TKSFELKIWVC--VNE 229 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~----------------~~~f~~~~wv~--~~~ 229 (1141)
...+.+...+..+ .-...+.++|+.|+||+++|..+....-. .+...-..|+. ...
T Consensus 11 ~~~~~l~~~~~~~------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAG------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR 84 (319)
T ss_pred HHHHHHHHHHHcC------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc
Confidence 3455566655543 23457899999999999999877542110 11112244552 111
Q ss_pred -c------h-hHHHHHH---h-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCCC
Q 001145 230 -D------F-NSQLRRL---L-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGTI 291 (1141)
Q Consensus 230 -~------~-~~~l~~~---l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~~ 291 (1141)
+ . -..+++. + .+++-++|+|++.......-..+...+..-..++.+|++|.. ..+... .+.-
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 0 1 1133332 2 356779999999666666677777778766667777766664 333322 2333
Q ss_pred CceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 292 PPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 292 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
..+.+.+++.+++.+.+.... .....+..++..++|.|+.+..+.
T Consensus 165 q~i~~~~~~~~~~~~~L~~~~--------~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQG--------VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHcC--------CChHHHHHHHHHcCCCHHHHHHHh
Confidence 468899999999988886531 011235678999999998766554
No 195
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.79 E-value=0.0059 Score=62.58 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=28.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEe
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCV 227 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 227 (1141)
-.++|+|..|.|||||+..+..+ ....|+.+.+++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 46789999999999999999873 5567876666643
No 196
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.78 E-value=0.00044 Score=69.21 Aligned_cols=186 Identities=15% Similarity=0.045 Sum_probs=100.1
Q ss_pred hcCCCCccEEEEecCCCcccc----ccccCCCCccCeeecccccccc----cc-------cccccCCCCCCEEeEccCCC
Q 001145 893 LENNPCLTSLTISSCPNLRSI----SSKLGCLVALKSLTIRWCQELI----AL-------PQEIQNLSLLESLEISECHS 957 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~----~l-------~~~l~~l~~L~~L~Ls~~~~ 957 (1141)
+..+..++.++||+|..-+.- ...+.+-.+|+..+++.-. ++ .+ ...+-+||+|+..+||+|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 334667777777777654432 2223444555555555322 11 11 12455678888888888776
Q ss_pred Cccccc----cCCCCCCcCEEEEccCCCCCCc----cc---------ccCCCCCccEEeecCCCCCccc----CcCcccc
Q 001145 958 LTVLPE----GIEGLTSLRSLSIENCENLAYI----PR---------GLGHLIALEHLTIMYCPSLAFL----PENFRNL 1016 (1141)
Q Consensus 958 l~~~~~----~~~~l~~L~~L~L~~~~~l~~l----~~---------~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l 1016 (1141)
....|+ .+++-+.|++|.+++|..-..- .. -..+-|.|+.+....|.+..-. ...+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 555544 3455667778877775432211 10 1123456777777766553211 1122223
Q ss_pred CCcceEEecCCCCccc-----ccccCCCCCCcCeEeeccCCCCcc----cCcCCCCCCCcCEEeeccCCCcc
Q 001145 1017 TMLKSLCILSCPELAS-----LPDELQHVTTLQSLEIHSCPAFKD----LPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1017 ~~L~~L~L~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~----lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
.+|+++.+..|.+... +..+++.+.+|+.|+|..|.++.. +...+...+.|+.|.+.+|-+..
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 4677777777755321 123345567777777777765432 11223344557777777775543
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.77 E-value=0.005 Score=59.08 Aligned_cols=24 Identities=50% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEEecCcchHHHHHHHHHcCc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
..+.|+|++|+||||+|+.++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 378999999999999999998843
No 198
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.77 E-value=0.014 Score=57.00 Aligned_cols=129 Identities=21% Similarity=0.252 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC----ccc--------------ccccceEEEEE
Q 001145 165 GREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND----EKV--------------TKSFELKIWVC 226 (1141)
Q Consensus 165 gr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~----~~~--------------~~~f~~~~wv~ 226 (1141)
|-++..+.+.+.+... .-...+.++|+.|+||+|+|..+.+. ... .+......|+.
T Consensus 1 gq~~~~~~L~~~~~~~------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCT------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcC------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe
Confidence 4566677777777654 13447899999999999999887552 111 02233355555
Q ss_pred eCcc---hh-HHHHH---Hh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHHh-hCCCC
Q 001145 227 VNED---FN-SQLRR---LL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VATI-VGTIP 292 (1141)
Q Consensus 227 ~~~~---~~-~~l~~---~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~~ 292 (1141)
.... .. ..+++ .+ .+++-++|+|++.......+..++..+.....++.+|++|++.. +... ...-.
T Consensus 75 ~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 75 PDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp TTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhce
Confidence 4432 21 23333 22 34577899999987778889999999988778899888888643 3222 23333
Q ss_pred ceeCCCC
Q 001145 293 PYYLKGL 299 (1141)
Q Consensus 293 ~~~l~~l 299 (1141)
.+.+.++
T Consensus 155 ~i~~~~l 161 (162)
T PF13177_consen 155 VIRFRPL 161 (162)
T ss_dssp EEEE---
T ss_pred EEecCCC
Confidence 4555554
No 199
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.77 E-value=0.00017 Score=72.06 Aligned_cols=84 Identities=27% Similarity=0.330 Sum_probs=61.6
Q ss_pred CCCCcccEEEccCCCCcc-----ccccccccccCceEecCCCc----ccccc-------hhhhcCCCCcEEecCCCCCCc
Q 001145 538 SSFRYLRTLNLSGSGIKK-----LHSSISCLISLRYLNMSNTL----IERLP-------ESICDLVYLQVLNLSDCHDLI 601 (1141)
Q Consensus 538 ~~l~~Lr~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~----i~~lp-------~~i~~L~~L~~L~L~~~~~l~ 601 (1141)
.-+..+..++|++|.+.+ +...|.+-.+|+..+++.-. ..++| +.+-++++|++.+|+.|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 336777888888888753 45567777888888887431 12333 446688999999999988666
Q ss_pred ccCcc----ccCCCCCcEEEecCc
Q 001145 602 ELPKR----LASIFQLRHLMIYGC 621 (1141)
Q Consensus 602 ~lp~~----i~~L~~L~~L~l~~~ 621 (1141)
..|.. |++-+.|.||.+++|
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC
Confidence 66544 567789999999988
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.74 E-value=0.0038 Score=64.88 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=52.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-------------HHHHHHhcCcceeeeecCCCCCCh
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-------------SQLRRLLRGRRYLLVLDDVWNEDH 256 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-------------~~l~~~l~~k~~LlvlDdvw~~~~ 256 (1141)
..+.++|.+|+|||+||.++++... ..-..++++++.+-.. ..+.+.+. +.=+||+||+.....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~-~~dlLvIDDig~~~~ 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS-NVDLLVIDEIGVQTE 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc-cCCEEEEeCCCCCCC
Confidence 4788999999999999999998432 2223456666543221 02222333 455889999965545
Q ss_pred HHHHH--HHHhccCC-CCCcEEEEEcCc
Q 001145 257 EEWDK--LRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 257 ~~~~~--l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
.+|.. +...+... ...-.+||||-.
T Consensus 177 s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 177 SRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 55653 33222211 123347777754
No 201
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.72 E-value=0.012 Score=69.78 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=39.7
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
-.+++|-++.++++..++...... ....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~--~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE--NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc--cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999998764211 112357999999999999999999874
No 202
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.025 Score=59.88 Aligned_cols=180 Identities=14% Similarity=0.067 Sum_probs=99.1
Q ss_pred CccccchHHHHHHHHHHHhCCCC------CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh--
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS------GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-- 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-- 232 (1141)
..+=|-++.+++|.+...-+-.. -+-..++=|.++|++|.|||-||++|++. ....|- -|..|+=.+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtFI---rvvgSElVqKY 225 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATFI---RVVGSELVQKY 225 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceEE---EeccHHHHHHH
Confidence 34667888888887765432110 11235678899999999999999999993 334442 222222111
Q ss_pred -----HHHHHHh----cCcceeeeecCCCC-----------CChHHHHHH---HHhccCC--CCCcEEEEEcCchHHHHh
Q 001145 233 -----SQLRRLL----RGRRYLLVLDDVWN-----------EDHEEWDKL---RVSLSDG--AEGSRVIVTTRSAKVATI 287 (1141)
Q Consensus 233 -----~~l~~~l----~~k~~LlvlDdvw~-----------~~~~~~~~l---~~~l~~~--~~gs~ilvTtr~~~v~~~ 287 (1141)
..+++.+ ...+..|.+|.+.. .+.+....+ ...+... ....|||.+|-..++...
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP 305 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP 305 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence 1233332 35688999998832 122333333 3333322 245788888865443322
Q ss_pred --h---CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch----hHHHHHhhhhc
Q 001145 288 --V---GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP----LAAKALGSLMR 348 (1141)
Q Consensus 288 --~---~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~~~~~l~ 348 (1141)
+ .-++.+++..-+.+.-.+.|+-++-.-.-.... --+.+++.|.|.- -|+.+=|++++
T Consensus 306 ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv---d~e~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 306 ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV---DLELLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred hhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc---CHHHHHHhcCCCchHHHHHHHHHHhHHH
Confidence 1 224467777666666677887776322211111 1345666666554 24444456543
No 203
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.71 E-value=0.0076 Score=75.45 Aligned_cols=120 Identities=21% Similarity=0.300 Sum_probs=74.3
Q ss_pred cCccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc--------
Q 001145 160 ESEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-------- 229 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-------- 229 (1141)
...++|.+..++.|...+..... ........++.++|+.|+|||+||+.+.+.. -+.-...+-+..++
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccHH
Confidence 35689999999999888764311 1112234567799999999999999887621 00001111111111
Q ss_pred ------------chhHHHHHHhcCcce-eeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 230 ------------DFNSQLRRLLRGRRY-LLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 230 ------------~~~~~l~~~l~~k~~-LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
+-...+.+.++.+++ ++++|++...++..+..+...+..+. ..+-+|+||..
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 011246666666654 88899997777778888887776542 34556666654
No 204
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.68 E-value=0.019 Score=61.22 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+-++++..++... .-|.+.|++|+|||++|+.+..
T Consensus 9 ~l~~~~l~~l~~g---------~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 9 RVTSRALRYLKSG---------YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHhcC---------CeEEEEcCCCCCHHHHHHHHHH
Confidence 3345555555533 2466899999999999999986
No 205
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.68 E-value=0.0029 Score=60.97 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=6.8
Q ss_pred CCCCcceEeccCC
Q 001145 1087 HLTTLQHLSIREC 1099 (1141)
Q Consensus 1087 ~l~~L~~L~l~~c 1099 (1141)
.+|+|+.||..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 3455555555544
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.67 E-value=0.0018 Score=68.76 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=51.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccc-cceEEEEEeCcchhHH------HHHHh--cCcceeeeecCCCC-----CC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKS-FELKIWVCVNEDFNSQ------LRRLL--RGRRYLLVLDDVWN-----ED 255 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~------l~~~l--~~k~~LlvlDdvw~-----~~ 255 (1141)
..+.++|..|+|||+||.++++. +..+ -..+++++..+-+... ..+.+ -.+-=||||||+.. +.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~ 195 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPR 195 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCcc
Confidence 47899999999999999999984 3222 3446777764433221 11111 12345999999922 22
Q ss_pred hHHHHH--HHHhccCC-CCCcEEEEEcCc
Q 001145 256 HEEWDK--LRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 256 ~~~~~~--l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
..+|.. +...+... ..+..+||||..
T Consensus 196 ~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 196 ATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 234542 33333221 134458888764
No 207
>PRK06526 transposase; Provisional
Probab=96.67 E-value=0.0013 Score=69.19 Aligned_cols=90 Identities=23% Similarity=0.180 Sum_probs=47.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH--------HHHHHhc--CcceeeeecCCCCCChHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS--------QLRRLLR--GRRYLLVLDDVWNEDHEEW 259 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--------~l~~~l~--~k~~LlvlDdvw~~~~~~~ 259 (1141)
..+.|+|++|+|||+||..+.+... ...+ .+.|++..+-+.. .+.+.+. .+.-++|+||+.......|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHH
Confidence 4689999999999999999976322 2222 2344443321111 1111111 2345899999953321122
Q ss_pred --HHHHHhccCC-CCCcEEEEEcCch
Q 001145 260 --DKLRVSLSDG-AEGSRVIVTTRSA 282 (1141)
Q Consensus 260 --~~l~~~l~~~-~~gs~ilvTtr~~ 282 (1141)
+.+...+... ..++ +|+||...
T Consensus 177 ~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 177 AANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred HHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 2233333221 2344 88888753
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.0019 Score=70.07 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=42.2
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+.+++|.++.++++++++..... +.+...+++.++|++|+||||||+.+.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~-g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQ-GLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34799999999999999976532 11234579999999999999999999874
No 209
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.66 E-value=0.0016 Score=61.92 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=63.8
Q ss_pred ccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-ccccceEEEEEeCcchhHHHHHHhcCc
Q 001145 164 VGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-TKSFELKIWVCVNEDFNSQLRRLLRGR 242 (1141)
Q Consensus 164 vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~l~~~l~~k 242 (1141)
||+...+.++.+.+..-. ....-|.|.|..|+||+++|+.++..... ...|... .........+.+ .+
T Consensus 1 vG~S~~~~~l~~~l~~~a-----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~~~~~l~~---a~ 69 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASLPAELLEQ---AK 69 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCTCHHHHHH---CT
T ss_pred CCCCHHHHHHHHHHHHHh-----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhCcHHHHHH---cC
Confidence 466666777766665431 11236789999999999999999874322 1222211 111111112222 36
Q ss_pred ceeeeecCCCCCChHHHHHHHHhccCC-CCCcEEEEEcCch
Q 001145 243 RYLLVLDDVWNEDHEEWDKLRVSLSDG-AEGSRVIVTTRSA 282 (1141)
Q Consensus 243 ~~LlvlDdvw~~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~ 282 (1141)
.--++++|+..-+......+...+... ....|+|.||+..
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 667789999766666777777777643 5678999998853
No 210
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.055 Score=58.86 Aligned_cols=158 Identities=9% Similarity=0.067 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc--------------------ccccceEEEEEe--
Q 001145 170 KEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV--------------------TKSFELKIWVCV-- 227 (1141)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~--------------------~~~f~~~~wv~~-- 227 (1141)
...+.+.+..+ .-.+...+.|+.|+||+++|+.+..-.-. ..|-| ..++..
T Consensus 11 ~~~l~~~~~~~------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQG------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD-FHILEPID 83 (325)
T ss_pred HHHHHHHHHcC------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEcccc
Confidence 44555555543 23467889999999999999888542110 11222 223322
Q ss_pred CcchhH-HHH---HHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-hCCCCceeC
Q 001145 228 NEDFNS-QLR---RLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-VGTIPPYYL 296 (1141)
Q Consensus 228 ~~~~~~-~l~---~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~~~~l 296 (1141)
+..... .++ +.+ .+++-++|+|++..........+...+.....++.+|++|... .+... .+.-..+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 111111 233 222 3667788899997777778888888888767777777777653 44322 233457899
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 297 KGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 297 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
.++++++..+.+...... ....+...+..++|.|..+.
T Consensus 164 ~~~~~~~~~~~L~~~~~~-------~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA-------EISEILTALRINYGRPLLAL 201 (325)
T ss_pred CCCCHHHHHHHHHHHhcc-------ChHHHHHHHHHcCCCHHHHH
Confidence 999999999888775311 11124567788999996443
No 211
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.62 E-value=0.053 Score=59.33 Aligned_cols=88 Identities=24% Similarity=0.259 Sum_probs=52.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHH--------------HhcCcceeeeecCCCCCC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRR--------------LLRGRRYLLVLDDVWNED 255 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~--------------~l~~k~~LlvlDdvw~~~ 255 (1141)
..+.++|..|+|||+||.++++... ..-..++++++.+-+.. +.. .+. +-=||||||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~~l~~~-l~~~~~~~~~~~~~~~~~l~-~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADELIEI-LREIRFNNDKELEEVYDLLI-NCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHHHHHHH-HHHHHhccchhHHHHHHHhc-cCCEEEEeccCCCC
Confidence 4689999999999999999998432 22235677776543221 111 111 23489999995443
Q ss_pred hHHHH--HHHHhccCC-CCCcEEEEEcCc
Q 001145 256 HEEWD--KLRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 256 ~~~~~--~l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
...|. .+...+... ..+-.+||||..
T Consensus 260 ~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 260 ITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 33332 333333221 234568888864
No 212
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.62 E-value=0.038 Score=68.05 Aligned_cols=150 Identities=18% Similarity=0.246 Sum_probs=82.0
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc---------
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED--------- 230 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--------- 230 (1141)
+...+|.++.+++|+++|....... ...-.++.++|++|+||||+|+.++.. ....|-..-+-.+.+.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~-~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVN-KIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYVRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcc-cCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEEEEcCCCCCHHHhccchhc
Confidence 4568999999999998887421011 112347999999999999999999862 2223322111111111
Q ss_pred ----hhHHHHHHhc---CcceeeeecCCCCCChH----HHHHHHHhccCC---------------CCCcEEEEEcCchHH
Q 001145 231 ----FNSQLRRLLR---GRRYLLVLDDVWNEDHE----EWDKLRVSLSDG---------------AEGSRVIVTTRSAKV 284 (1141)
Q Consensus 231 ----~~~~l~~~l~---~k~~LlvlDdvw~~~~~----~~~~l~~~l~~~---------------~~gs~ilvTtr~~~v 284 (1141)
....+.+.+. ...-+++||.+..-... ....+...+... -...-+|.|+.+..+
T Consensus 398 ~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i 477 (784)
T PRK10787 398 YIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNI 477 (784)
T ss_pred cCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCC
Confidence 0012222221 23457899998432221 123444444321 123334445544333
Q ss_pred HHh-hCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 285 ATI-VGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 285 ~~~-~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
... ......+++.++++++-.++.+++.
T Consensus 478 ~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 478 PAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 222 2223467888888888877776664
No 213
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0086 Score=66.08 Aligned_cols=136 Identities=17% Similarity=0.286 Sum_probs=81.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc------chh-----HHHHHHhcCcceeeeecCCCCCCh
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE------DFN-----SQLRRLLRGRRYLLVLDDVWNEDH 256 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------~~~-----~~l~~~l~~k~~LlvlDdvw~~~~ 256 (1141)
....+.+.|++|+|||+||..++. ...|+.+--++..+ ... ....+..+..--.||+||+ +..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdi--ErL 610 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDI--ERL 610 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcch--hhh
Confidence 567788999999999999999985 35677554443221 111 1334445667779999998 222
Q ss_pred HHH------------HHHHHhccCC-CCCcEEEE--EcCchHHHHhhCC----CCceeCCCCCH-HHHHHHHhhcc-cCC
Q 001145 257 EEW------------DKLRVSLSDG-AEGSRVIV--TTRSAKVATIVGT----IPPYYLKGLSH-DDCWTLFKQRA-FAP 315 (1141)
Q Consensus 257 ~~~------------~~l~~~l~~~-~~gs~ilv--Ttr~~~v~~~~~~----~~~~~l~~l~~-~~~~~lf~~~~-~~~ 315 (1141)
.+| +.+...+... .+|-|++| ||....+...|+- ...+.+..++. ++..+.++..- |.
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fs- 689 (744)
T KOG0741|consen 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFS- 689 (744)
T ss_pred hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCC-
Confidence 233 3344444332 24555544 6666677776643 33688888877 66666665532 32
Q ss_pred CCCCcCcchhhHHHHhhc
Q 001145 316 GEEYLNFLPVGKEIVKKC 333 (1141)
Q Consensus 316 ~~~~~~~~~~~~~i~~~~ 333 (1141)
+.....++.+.+.+|
T Consensus 690 ---d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 690 ---DDEVRAIAEQLLSKK 704 (744)
T ss_pred ---cchhHHHHHHHhccc
Confidence 223344556666666
No 214
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.07 Score=62.01 Aligned_cols=151 Identities=18% Similarity=0.251 Sum_probs=85.3
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-----
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS----- 233 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~----- 233 (1141)
-+.+-+|.++-+++|++.|.-..-.. .-.-.++.+||++|||||+|++.++. .....|-...-=-+.+....
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~-~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTK-KLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhc-cCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEEEecCccccHHHhccccc
Confidence 34567999999999999886331000 11225999999999999999999987 33344421111111111111
Q ss_pred --------H-HHH--HhcCcceeeeecCCCCCCh----HHHHHHHHhccCCC-------------CCcEE-EEEcCc-hH
Q 001145 234 --------Q-LRR--LLRGRRYLLVLDDVWNEDH----EEWDKLRVSLSDGA-------------EGSRV-IVTTRS-AK 283 (1141)
Q Consensus 234 --------~-l~~--~l~~k~~LlvlDdvw~~~~----~~~~~l~~~l~~~~-------------~gs~i-lvTtr~-~~ 283 (1141)
. ++. ..+.+.-+++||.+..... +.-..+...|.... -=|.| .|||-+ -+
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 2 222 2245678999999832110 11223333332111 11344 344433 22
Q ss_pred -HH-HhhCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 284 -VA-TIVGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 284 -v~-~~~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
+. ..+....++++.+-+++|-.+.-+++.
T Consensus 478 tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 478 TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 22 233445689999999999888877765
No 215
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.081 Score=57.43 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC-----cc--------------cccccceEEEEEeC-
Q 001145 169 DKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND-----EK--------------VTKSFELKIWVCVN- 228 (1141)
Q Consensus 169 ~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~-----~~--------------~~~~f~~~~wv~~~- 228 (1141)
..+++.+.+... .-...+.++|+.|+||+++|+.+..- .. ...|-| ..|+...
T Consensus 11 ~~~~l~~~~~~~------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~ 83 (319)
T PRK06090 11 VWQNWKAGLDAG------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK 83 (319)
T ss_pred HHHHHHHHHHcC------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc
Confidence 345555555443 23568899999999999999888542 10 012223 3344332
Q ss_pred --cchhH-HHH---HHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCCCCcee
Q 001145 229 --EDFNS-QLR---RLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGTIPPYY 295 (1141)
Q Consensus 229 --~~~~~-~l~---~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~~~~~~ 295 (1141)
..... .++ +.+ .+++-++|+|++.......+..+...+.....++.+|++|.+ ..+... .+.-..+.
T Consensus 84 ~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 84 EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 11211 222 222 355668899999776777888888888776667776666654 344333 33345789
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 296 LKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 296 l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
+.++++++..+.+..... . .+..+++.++|.|+.+..+.
T Consensus 164 ~~~~~~~~~~~~L~~~~~------~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQGI------T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred CCCCCHHHHHHHHHHcCC------c----hHHHHHHHcCCCHHHHHHHh
Confidence 999999999888865420 0 23577889999998776553
No 216
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.55 E-value=0.036 Score=61.06 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=69.1
Q ss_pred ceeeeecCCCCCC---------hHHHHHHHHhccCCCCCcEEEEEcCchHHHH----hhCC--CCceeCCCCCHHHHHHH
Q 001145 243 RYLLVLDDVWNED---------HEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT----IVGT--IPPYYLKGLSHDDCWTL 307 (1141)
Q Consensus 243 ~~LlvlDdvw~~~---------~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~----~~~~--~~~~~l~~l~~~~~~~l 307 (1141)
|=+||+|+.-... ..+|... +.. .+-.+||+.|-+..... .+.. .+.+.+...+.+.|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~---Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAAS---LVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHH---HHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6789999983321 1344432 222 24457888887754443 3322 23677999999999999
Q ss_pred HhhcccCCCCC------------C------cCcchhhHHHHhhcCCchhHHHHHhhhhcccCChh
Q 001145 308 FKQRAFAPGEE------------Y------LNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEG 354 (1141)
Q Consensus 308 f~~~~~~~~~~------------~------~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~ 354 (1141)
..++.-..... . .....-....++..||--.-+..+++.++...+++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 99886443110 0 12333456788888999889999999888776544
No 217
>PRK07261 topology modulation protein; Provisional
Probab=96.53 E-value=0.0031 Score=62.27 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=38.1
Q ss_pred EEEEEecCcchHHHHHHHHHcCccc-ccccceEEEEEe----C-cchhHHHHHHhcCcceeeeecCCC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKV-TKSFELKIWVCV----N-EDFNSQLRRLLRGRRYLLVLDDVW 252 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~----~-~~~~~~l~~~l~~k~~LlvlDdvw 252 (1141)
.|.|+|++|+||||||+++...... .-+.|...|-.. . +.+...+.+.+.+.+ .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC--EEEcCcc
Confidence 4889999999999999999764222 123454555321 1 123335566676666 6778873
No 218
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.50 E-value=0.0098 Score=74.35 Aligned_cols=119 Identities=25% Similarity=0.311 Sum_probs=71.8
Q ss_pred CccccchHHHHHHHHHHHhCCCC--CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh------
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS--GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN------ 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~--~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~------ 232 (1141)
..++|.+..++.+...+...... .......++.++|+.|+|||++|+.+++... ..-...+.+..+.-..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~~~~~~~ 645 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFMEKHSVSR 645 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhhhhhHHH
Confidence 46899999999998888643110 1112335788999999999999999986211 1111223333322110
Q ss_pred --------------HHHHHHhcCcc-eeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 233 --------------SQLRRLLRGRR-YLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 233 --------------~~l~~~l~~k~-~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
..+.+.++.++ -+++||++...+...+..+...+..+. ..+.||+||..
T Consensus 646 LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 646 LVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 12333333333 589999997667778888877775431 22336777764
No 219
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.015 Score=63.71 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=88.9
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc------chh
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE------DFN 232 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------~~~ 232 (1141)
.++.++||+.+++.+..++...-. .....-+-|.|.+|.|||.+...++.+......=..++++.... -|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle---~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE---LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh---cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 456799999999999999886521 22345788999999999999999998643222212234443321 111
Q ss_pred --------------------HHHHHHhcC--cceeeeecCCCCCChHHHHHHHHhccC-CCCCcEEEEEcCc------hH
Q 001145 233 --------------------SQLRRLLRG--RRYLLVLDDVWNEDHEEWDKLRVSLSD-GAEGSRVIVTTRS------AK 283 (1141)
Q Consensus 233 --------------------~~l~~~l~~--k~~LlvlDdvw~~~~~~~~~l~~~l~~-~~~gs~ilvTtr~------~~ 283 (1141)
..+.++..+ ..+|+|+|.+..-.......+...|.+ .-+++|+|+---- ..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 123333333 358999999832111111222222322 2356666553211 01
Q ss_pred HHHhh-----CCCCceeCCCCCHHHHHHHHhhccc
Q 001145 284 VATIV-----GTIPPYYLKGLSHDDCWTLFKQRAF 313 (1141)
Q Consensus 284 v~~~~-----~~~~~~~l~~l~~~~~~~lf~~~~~ 313 (1141)
....+ .....+...+-+.++-.++|..+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11111 1233678899999999999998863
No 220
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.47 E-value=0.041 Score=55.27 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=92.5
Q ss_pred CccccchHHHHH---HHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-------c
Q 001145 161 SEVVGREEDKEA---MIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-------D 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~---l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-------~ 230 (1141)
+++||.++.+.+ |++.|..+. .=+...++.|..+|++|.|||.+|+++.+..++ .| +-|...+ +
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe-~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~---l~vkat~liGehVGd 194 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPE-RFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL---LLVKATELIGEHVGD 194 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChH-HhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce---EEechHHHHHHHhhh
Confidence 468998876543 566666542 112346789999999999999999999995442 22 1222111 1
Q ss_pred hhHHHHHH----hcCcceeeeecCCCCCC------------hHHHHHHHHhccC--CCCCcEEEEEcCchHHHHh-hC--
Q 001145 231 FNSQLRRL----LRGRRYLLVLDDVWNED------------HEEWDKLRVSLSD--GAEGSRVIVTTRSAKVATI-VG-- 289 (1141)
Q Consensus 231 ~~~~l~~~----l~~k~~LlvlDdvw~~~------------~~~~~~l~~~l~~--~~~gs~ilvTtr~~~v~~~-~~-- 289 (1141)
....+++. -+.-++.+.+|.+.--. .+....+..-+.. .+.|...|-.|........ +.
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhh
Confidence 11233332 35568999999872100 0111122222221 2356656666655443322 21
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCc
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGI 336 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 336 (1141)
-...++...-+++|..+++..++-.-. -.+..-.+.++++.+|.
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~P---lpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFP---LPVDADLRYLAAKTKGM 318 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCC---CccccCHHHHHHHhCCC
Confidence 223567777788888888888772211 11222245666666664
No 221
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.00033 Score=83.64 Aligned_cols=199 Identities=24% Similarity=0.357 Sum_probs=95.1
Q ss_pred CCCCccEEEEecCCCccc--cccccCCCCccCeeecccc-ccccccc----ccccCCCCCCEEeEccCCCCccc-cccC-
Q 001145 895 NNPCLTSLTISSCPNLRS--ISSKLGCLVALKSLTIRWC-QELIALP----QEIQNLSLLESLEISECHSLTVL-PEGI- 965 (1141)
Q Consensus 895 ~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~-~~~~~l~----~~l~~l~~L~~L~Ls~~~~l~~~-~~~~- 965 (1141)
.++.|+.|.+.+|..+.. +......+++|+.|++++| ......+ .....+++|+.|++++|...+.. -..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356667777776665554 2233456666777777653 2211111 12334566777777776632221 1111
Q ss_pred CCCCCcCEEEEccCCCCC--CcccccCCCCCccEEeecCCCCCcc--cCcCccccCCcceEEecCCC---Cccc------
Q 001145 966 EGLTSLRSLSIENCENLA--YIPRGLGHLIALEHLTIMYCPSLAF--LPENFRNLTMLKSLCILSCP---ELAS------ 1032 (1141)
Q Consensus 966 ~~l~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~---~~~~------ 1032 (1141)
..+++|+.|.+.+|..++ .+......+++|++|++++|..... +.....++++|+.|.+.... ..+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 236677777766666421 1222334566677777776665422 12223334444444333322 1110
Q ss_pred --------ccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCc-cccCCCCCCCCCcceEeccCCcchH
Q 001145 1033 --------LPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTI-ISLPANLQHLTTLQHLSIRECPRLE 1103 (1141)
Q Consensus 1033 --------~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~-~~lp~~~~~l~~L~~L~l~~c~~L~ 1103 (1141)
....+.+++.|+.+.+..|. ..... ..+.+.+|+.+ ..+........+++.|+++.|...+
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~---------~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG---------LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc---------hHHHhcCCcccchHHHHHhccCCccceEecccCcccc
Confidence 01122334444444444443 11110 13455555554 2222222333348999999997554
No 222
>PF14516 AAA_35: AAA-like domain
Probab=96.43 E-value=0.032 Score=61.81 Aligned_cols=174 Identities=12% Similarity=0.114 Sum_probs=101.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-------hhH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-------FNS 233 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-------~~~ 233 (1141)
+-.|+|...-+++.+.+...+ ..+.|.|+-.+|||+|..++.+..+-. .+. .+++....- .+.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~G--------~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQPG--------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CcccCchHHHHHHHHHHhcCC--------CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHH
Confidence 345678766667777776541 388999999999999999998743322 332 445544320 000
Q ss_pred -----------------------------------HHHHHh---cCcceeeeecCCCCCC--hHHHHHHHHhccC---C-
Q 001145 234 -----------------------------------QLRRLL---RGRRYLLVLDDVWNED--HEEWDKLRVSLSD---G- 269 (1141)
Q Consensus 234 -----------------------------------~l~~~l---~~k~~LlvlDdvw~~~--~~~~~~l~~~l~~---~- 269 (1141)
.+.+++ .+++.+|++|+|..-- ..-.+++...++. .
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 233332 2689999999984311 1111222222221 1
Q ss_pred C----CCcEEEEEcCchH--HHHhh-----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh
Q 001145 270 A----EGSRVIVTTRSAK--VATIV-----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 270 ~----~gs~ilvTtr~~~--v~~~~-----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 338 (1141)
. ...-.+|...+.. ..... .....+++.+++.+|...|..++-.. --....++|....+|+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHH
Confidence 1 1111222222211 11111 11236889999999999999886422 111237899999999999
Q ss_pred HHHHHhhhhccc
Q 001145 339 AAKALGSLMRFK 350 (1141)
Q Consensus 339 ai~~~~~~l~~~ 350 (1141)
-+..++..+..+
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999988653
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.066 Score=58.73 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=65.5
Q ss_pred cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCCCCceeCCCCCHHHHHHHHhhcccCCCC
Q 001145 240 RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGTIPPYYLKGLSHDDCWTLFKQRAFAPGE 317 (1141)
Q Consensus 240 ~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~ 317 (1141)
.+++-++|+|++.......+..+...+....+++.+|.+|.+ ..+... .+.-..+.+.+++.++..+.+.....
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~---- 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV---- 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC----
Confidence 355668899999877888888998888876677766555544 444433 23345789999999999988876421
Q ss_pred CCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 318 EYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 318 ~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
.+ ....+..++|.|..+..+.
T Consensus 206 -~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 2345778899997555443
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.39 E-value=0.013 Score=57.40 Aligned_cols=111 Identities=23% Similarity=0.239 Sum_probs=65.3
Q ss_pred cccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-ccccceEEEEEeCcchhHHHHHHh--
Q 001145 163 VVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-TKSFELKIWVCVNEDFNSQLRRLL-- 239 (1141)
Q Consensus 163 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~l~~~l-- 239 (1141)
+||....+.++++.+..... ...-|.|+|..|+||+.+|+.+++.-.. .+.| +-|.++.-....+...|
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pf---i~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----SDLPVLITGETGTGKELLARAIHNNSPRKNGPF---ISVNCAALPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-E---EEEETTTS-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC-----CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCe---EEEehhhhhcchhhhhhhc
Confidence 47888888888887776521 1135669999999999999999984221 1222 33333322222232222
Q ss_pred ------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 240 ------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 240 ------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
+...=-++||++..-.......|...+..+. ...|||.||..
T Consensus 73 ~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 1234578999997766666667777665321 25688888875
No 225
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.011 Score=65.33 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=56.1
Q ss_pred ccccch---HHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH---
Q 001145 162 EVVGRE---EDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS--- 233 (1141)
Q Consensus 162 ~~vgr~---~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--- 233 (1141)
++-|-+ .|+++|+++|.++.. .-++.=++-|.++|++|.|||-||++|+-...+- +|......|++
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDEMFV 378 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhhhhh
Confidence 455665 567788888887621 0123345678999999999999999999754432 23344455554
Q ss_pred -----HHHHH----hcCcceeeeecCC
Q 001145 234 -----QLRRL----LRGRRYLLVLDDV 251 (1141)
Q Consensus 234 -----~l~~~----l~~k~~LlvlDdv 251 (1141)
++++. -+.-++.|.+|.+
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEi 405 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEI 405 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEech
Confidence 33333 3456899999988
No 226
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.36 E-value=0.0035 Score=60.49 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=55.4
Q ss_pred cCCCCcccEEEccCCCCccccccccc-cccCceEecCCCcccccc--hhhhcCCCCcEEecCCCCCCcccCc----cccC
Q 001145 537 FSSFRYLRTLNLSGSGIKKLHSSISC-LISLRYLNMSNTLIERLP--ESICDLVYLQVLNLSDCHDLIELPK----RLAS 609 (1141)
Q Consensus 537 ~~~l~~Lr~L~L~~~~l~~lp~~i~~-L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~ 609 (1141)
|..++.|..|.|.+|.|+.+...+.. +++|..|.|.+|.|.++- .-+..++.|++|.+-+|. +...+. .+.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEe
Confidence 66777777777777777777555543 455777777777776653 334566777777777765 222221 3677
Q ss_pred CCCCcEEEecCc
Q 001145 610 IFQLRHLMIYGC 621 (1141)
Q Consensus 610 L~~L~~L~l~~~ 621 (1141)
+++|+.||..+-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 888888887654
No 227
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.097 Score=57.65 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc-----c---------------cccccceEEEEEeC
Q 001145 169 DKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE-----K---------------VTKSFELKIWVCVN 228 (1141)
Q Consensus 169 ~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~-----~---------------~~~~f~~~~wv~~~ 228 (1141)
.-+++.+.+..+ +-.....+.|+.|+||+|+|.++..-. . ...|-| ..++...
T Consensus 10 ~~~~l~~~~~~~------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~ 82 (334)
T PRK07993 10 DYEQLVGSYQAG------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLTPE 82 (334)
T ss_pred HHHHHHHHHHcC------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecc
Confidence 345666666543 245688899999999999998864421 1 011223 2344322
Q ss_pred c---chhH-H---HHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHh-hCCCCce
Q 001145 229 E---DFNS-Q---LRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATI-VGTIPPY 294 (1141)
Q Consensus 229 ~---~~~~-~---l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~-~~~~~~~ 294 (1141)
. .... . +.+.+ .+++-++|+|++..........+...+.....++.+|.+|.. ..+... .+.-..+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 1 1111 2 22322 367779999999766777788888888776667776666655 444433 2334478
Q ss_pred eCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 295 YLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 295 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
.+.+++.++..+.+.... + ...+.+..++..++|.|..+..+
T Consensus 163 ~~~~~~~~~~~~~L~~~~-~------~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 163 YLAPPPEQYALTWLSREV-T------MSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cCCCCCHHHHHHHHHHcc-C------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988776532 1 11223567889999999654433
No 228
>PHA02244 ATPase-like protein
Probab=96.34 E-value=0.031 Score=60.80 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=48.7
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh----------------HHHHHHhcCcceeeeecCCCCC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN----------------SQLRRLLRGRRYLLVLDDVWNE 254 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~----------------~~l~~~l~~k~~LlvlDdvw~~ 254 (1141)
-|.|+|++|+|||+||++++.. ....| +.++...+ ..+.+.. .+--+++||++...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~pf-----v~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a 192 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDLDF-----YFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS 192 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcC
Confidence 4678999999999999999873 22222 21211100 0122222 23458999999655
Q ss_pred ChHHHHHHHHhccC-----------CCCCcEEEEEcCc
Q 001145 255 DHEEWDKLRVSLSD-----------GAEGSRVIVTTRS 281 (1141)
Q Consensus 255 ~~~~~~~l~~~l~~-----------~~~gs~ilvTtr~ 281 (1141)
.......+...+.. ..++.++|+|+..
T Consensus 193 ~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 193 IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 55555555555431 1256788888765
No 229
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.34 E-value=0.014 Score=71.02 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=65.9
Q ss_pred CccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc--------
Q 001145 161 SEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-------- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-------- 230 (1141)
..++|.++.++.|.+.+..... .........+.++|+.|+|||++|+.+.... ... .+.+..++-
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~~---~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GIE---LLRFDMSEYMERHTVSR 532 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CCC---cEEeechhhcccccHHH
Confidence 3589999999999888774310 1112234578999999999999999997632 111 122222211
Q ss_pred ------------hhHHHHHHhcCcc-eeeeecCCCCCChHHHHHHHHhccCC
Q 001145 231 ------------FNSQLRRLLRGRR-YLLVLDDVWNEDHEEWDKLRVSLSDG 269 (1141)
Q Consensus 231 ------------~~~~l~~~l~~k~-~LlvlDdvw~~~~~~~~~l~~~l~~~ 269 (1141)
-...+.+.++.++ .++++|++.....+.+..+...+..+
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 0113445554444 59999999776777777777766543
No 230
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.34 E-value=0.059 Score=50.81 Aligned_cols=82 Identities=16% Similarity=0.305 Sum_probs=69.7
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhhhhhhH
Q 001145 2 AEIVLCPLLQVIFDKVASGLLKSIALKFGYEEEIDKLRHTINLIRAVVEDAEERQV-REKALKIWLADLKEVAYDVDNLL 80 (1141)
Q Consensus 2 ae~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~-~~~~~~~wl~~l~~~~~d~ed~l 80 (1141)
||.+++|+++.+++.+...+.+.......++.-+++|..+++.|.-++++.+.... -+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999876532 12222556788888888899988
Q ss_pred HHh
Q 001145 81 DEF 83 (1141)
Q Consensus 81 d~~ 83 (1141)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 876
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.026 Score=70.16 Aligned_cols=170 Identities=12% Similarity=0.051 Sum_probs=90.6
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-----
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE----- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----- 229 (1141)
.++.|.++.+++|.+++.-.-. .-+-...+-|.++|++|+||||||+.+++.. ...| +.+..+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~i~~~~ 252 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPEIMSKY 252 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHHHhccc
Confidence 3588999999998877642100 0011234578899999999999999998732 2222 2222111
Q ss_pred --chhH----HHHHHhcCcceeeeecCCCCCC-----------hHHHHHHHHhccCC-CCCcEEEE-EcCc-hHHHHhhC
Q 001145 230 --DFNS----QLRRLLRGRRYLLVLDDVWNED-----------HEEWDKLRVSLSDG-AEGSRVIV-TTRS-AKVATIVG 289 (1141)
Q Consensus 230 --~~~~----~l~~~l~~k~~LlvlDdvw~~~-----------~~~~~~l~~~l~~~-~~gs~ilv-Ttr~-~~v~~~~~ 289 (1141)
.... .+.........+|++|++..-. ......+...+... ..+..++| ||.. ..+...+.
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 1111 2333335567899999973210 11122333333221 22333444 4443 22222221
Q ss_pred ----CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh
Q 001145 290 ----TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 290 ----~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 338 (1141)
-...+.+...+.++..+++....-+ .... .......+++.+.|.--
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~--~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRN-MPLA--EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCc--cccCHHHHHHhCCCCCH
Confidence 1235778888888888888754311 1111 11235677888877653
No 232
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0018 Score=65.46 Aligned_cols=109 Identities=24% Similarity=0.227 Sum_probs=67.9
Q ss_pred cCCCCcccEEEccCCCCccccccccccccCceEecCCC--ccc-ccchhhhcCCCCcEEecCCCCC--CcccCccccCCC
Q 001145 537 FSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNT--LIE-RLPESICDLVYLQVLNLSDCHD--LIELPKRLASIF 611 (1141)
Q Consensus 537 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~--l~~lp~~i~~L~ 611 (1141)
+..+..|..|++.+..++.+ ..+-.|++|++|.++.| .+. .++-...++++|++|++++|+. +..++. +.++.
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhc
Confidence 45556666666666666554 23456788888888888 333 4555555668888888888762 222222 56677
Q ss_pred CCcEEEecCccccccc---CcccCCCCCCCccCceEecc
Q 001145 612 QLRHLMIYGCCRLSQF---PDHIGRLIQLQTLPVFIVGT 647 (1141)
Q Consensus 612 ~L~~L~l~~~~~~~~~---p~~i~~l~~L~~L~~~~~~~ 647 (1141)
+|..|+++.|...... -..+.-+++|..|+.+.+..
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 7888888877433211 12244577777777765543
No 233
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.057 Score=62.30 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=40.1
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-+.+-+|.++-+++|.+++.-..-.+ .-+-+++..+|++|||||.+|+.|+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrg-s~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRG-SVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcc-cCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 34567999999999999886431111 11336999999999999999999986
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.24 E-value=0.017 Score=68.16 Aligned_cols=43 Identities=33% Similarity=0.473 Sum_probs=35.0
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~-------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP-------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHH
Confidence 6899999998888776543 233567999999999999999975
No 235
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.0032 Score=58.37 Aligned_cols=21 Identities=48% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 236
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.16 E-value=0.0083 Score=62.85 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=28.1
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccc-eEEEEEeCcc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-LKIWVCVNED 230 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~ 230 (1141)
.++|.|..|+||||||+.+++. ++.+|+ ..+++-+.+.
T Consensus 71 r~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer 109 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGER 109 (274)
T ss_pred EEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccC
Confidence 6899999999999999999984 433443 4555555543
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.02 Score=68.25 Aligned_cols=143 Identities=17% Similarity=0.279 Sum_probs=85.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc----CcccccccceEEEE----------E
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN----DEKVTKSFELKIWV----------C 226 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~----~~~~~~~f~~~~wv----------~ 226 (1141)
+.++||++|++++++.|..... + --.++|.+|||||++|.-++. ..--..-=+..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K-----N--NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGak 242 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK-----N--NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAK 242 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC-----C--CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccc
Confidence 4589999999999999986521 1 224789999999998855544 21111111122221 1
Q ss_pred eCcchhHHHHHHh----cCcceeeeecCCCCC---------ChHHHHHHHHhccCCCCCcEEEEEcCchHHH------Hh
Q 001145 227 VNEDFNSQLRRLL----RGRRYLLVLDDVWNE---------DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVA------TI 287 (1141)
Q Consensus 227 ~~~~~~~~l~~~l----~~k~~LlvlDdvw~~---------~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~------~~ 287 (1141)
...+|...++..+ +.++..+.+|.++.- ..+.-..++.++..+. --.|-.||-++.-- ..
T Consensus 243 yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 243 YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHHHHHHhhhchHH
Confidence 2345666665555 455899999998431 1223334555555433 23466666654321 11
Q ss_pred hCCCCceeCCCCCHHHHHHHHhhc
Q 001145 288 VGTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 288 ~~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
-..-+.+.+..-+.+++...++..
T Consensus 322 ~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 322 ERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HhcCceeeCCCCCHHHHHHHHHHH
Confidence 123347888999999999888764
No 238
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.034 Score=53.38 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=36.7
Q ss_pred HHHHHhcCcceeeeecCCCC--CChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhh
Q 001145 234 QLRRLLRGRRYLLVLDDVWN--EDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIV 288 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~--~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~ 288 (1141)
.+.+.+-+++-+++-|.--- +....|+.+.-.-.-...|+.|+++|.+..+-..+
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 46677778888999986411 23345655433323345799999999998877665
No 239
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.14 E-value=0.014 Score=67.19 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=51.5
Q ss_pred CceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-----HHHHHhc--------CcceeeeecCCCC
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS-----QLRRLLR--------GRRYLLVLDDVWN 253 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-----~l~~~l~--------~k~~LlvlDdvw~ 253 (1141)
..-+++.++|++|+||||||.-|++... |. ++-+.+|++-.. .+...++ +++.-+|+|.+..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Ys-VvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----YS-VVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----ce-EEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 4568999999999999999999987432 33 677888876544 4444443 4556699999965
Q ss_pred CChHHHHHHHHhcc
Q 001145 254 EDHEEWDKLRVSLS 267 (1141)
Q Consensus 254 ~~~~~~~~l~~~l~ 267 (1141)
......+.+...+.
T Consensus 399 a~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 399 APRAAVDVILSLVK 412 (877)
T ss_pred CcHHHHHHHHHHHH
Confidence 44333444444443
No 240
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.11 E-value=0.033 Score=64.37 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=88.8
Q ss_pred CccccchHHHHHHHHHHHh---CCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC-------cc
Q 001145 161 SEVVGREEDKEAMIDLLAS---NGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN-------ED 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~---~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------~~ 230 (1141)
.++.|.+..++.+.+.... .....+-..++-|.++|++|.|||.+|+++.+... ..|- -+..+ ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~~---~l~~~~l~~~~vGe 302 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPLL---RLDVGKLFGGIVGE 302 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEE---EEEhHHhcccccCh
Confidence 3577877666665542211 10011112456789999999999999999988422 2221 11111 01
Q ss_pred hhHHHHHHh----cCcceeeeecCCCCC--------ChHH----HHHHHHhccCCCCCcEEEEEcCchH-HHHhh----C
Q 001145 231 FNSQLRRLL----RGRRYLLVLDDVWNE--------DHEE----WDKLRVSLSDGAEGSRVIVTTRSAK-VATIV----G 289 (1141)
Q Consensus 231 ~~~~l~~~l----~~k~~LlvlDdvw~~--------~~~~----~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~~----~ 289 (1141)
....+++.+ ...++++++|++..- +... ...+...+.....+.-||.||.... +...+ .
T Consensus 303 se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GR 382 (489)
T CHL00195 303 SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGR 382 (489)
T ss_pred HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCc
Confidence 112333333 457899999998421 0001 1112222332333444566765432 22222 2
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
-...+.+..-+.++..++|+.+......... ...-...+++.+.|.-
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 2447888888999999999887643221110 0112356666666644
No 241
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.09 E-value=0.048 Score=65.21 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=72.2
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cccccceEEEEEeCcchhHHHHH
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VTKSFELKIWVCVNEDFNSQLRR 237 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~l~~ 237 (1141)
....++|....+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.-. ....| +.+.+..-....+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~-----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~~~~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR-----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAALSETLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC-----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCCCHHHHHH
Confidence 345799999999998887765421 223577999999999999999987422 12222 333332222222222
Q ss_pred Hh--------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 238 LL--------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 238 ~l--------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
.+ ....-.++||+|..-....+..+...+..+. ...+||.||..
T Consensus 266 ~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 22 1223468999997666677777877775432 12588888754
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.0075 Score=63.53 Aligned_cols=69 Identities=25% Similarity=0.283 Sum_probs=43.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHH--------HHHHh-c--CcceeeeecCCCCCChHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQ--------LRRLL-R--GRRYLLVLDDVWNEDHEE 258 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--------l~~~l-~--~k~~LlvlDdvw~~~~~~ 258 (1141)
.-+.++|.+|+|||.||.++.+..- ..=-.+.++++.+-+... ....+ + .+-=|+||||+-......
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~ 183 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQ 183 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCH
Confidence 4688999999999999999998533 322346777776544331 11111 1 233489999995544444
Q ss_pred HH
Q 001145 259 WD 260 (1141)
Q Consensus 259 ~~ 260 (1141)
|.
T Consensus 184 ~~ 185 (254)
T COG1484 184 EE 185 (254)
T ss_pred HH
Confidence 44
No 243
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.01 E-value=0.032 Score=61.64 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=69.1
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cccccceEEEEEeCcchhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VTKSFELKIWVCVNEDFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~l~~~l 239 (1141)
..++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++..-. -...| +.+.+..-....+...+
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~-----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pf---v~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP-----LDKPVLIIGERGTGKELIASRLHYLSSRWQGPF---ISLNCAALNENLLDSEL 77 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCe---EEEeCCCCCHHHHHHHH
Confidence 3588999888888888765521 223578999999999999999986321 11222 22332221112222211
Q ss_pred --------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 240 --------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 240 --------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
....-.++||+|..-....+..+...+..+. ...|||.||..
T Consensus 78 fg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 2223468899997666667777777765432 13588887754
No 244
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.00 E-value=0.017 Score=55.45 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 245
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.00 E-value=0.035 Score=61.27 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=66.2
Q ss_pred cccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cccccceEEEEEeCcchhHHHHHHh--
Q 001145 163 VVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VTKSFELKIWVCVNEDFNSQLRRLL-- 239 (1141)
Q Consensus 163 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~l~~~l-- 239 (1141)
++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+++... ....| +-|.+..-....+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~~~~~l~~~lfG 72 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----LDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAALSENLLDSELFG 72 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----CCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCCChHHHHHHHhc
Confidence 46777777777777665421 223578999999999999999986322 12222 22322221112222211
Q ss_pred ------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 240 ------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 240 ------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
....-.++||+|..-.......+...+..+. ...|||.||..
T Consensus 73 ~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 73 HEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred cccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 2234568999997666666777777765432 23488888754
No 246
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.00 E-value=0.059 Score=51.53 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=56.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-ccc--cc---eEEEEE-eCcch--hHHHHHHhcCcceeeeecCCCC-CChHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TKS--FE---LKIWVC-VNEDF--NSQLRRLLRGRRYLLVLDDVWN-EDHEEW 259 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~-~~~~~--~~~l~~~l~~k~~LlvlDdvw~-~~~~~~ 259 (1141)
.+++|+|..|.|||||++.+...... .+. ++ .+.++. .|... ...+.+.+..++-++++|+.-. -|....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 38999999999999999999874321 111 11 112221 22222 2356777778888999998632 234444
Q ss_pred HHHHHhccCCCCCcEEEEEcCchHHHH
Q 001145 260 DKLRVSLSDGAEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 260 ~~l~~~l~~~~~gs~ilvTtr~~~v~~ 286 (1141)
..+...+... +..||++|.+.....
T Consensus 107 ~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 107 EALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 5555555432 246777777755443
No 247
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.96 E-value=0.011 Score=56.42 Aligned_cols=70 Identities=29% Similarity=0.336 Sum_probs=41.1
Q ss_pred EEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-H------------------HHHHhcCcceeeeecCCC
Q 001145 192 IPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS-Q------------------LRRLLRGRRYLLVLDDVW 252 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~------------------l~~~l~~k~~LlvlDdvw 252 (1141)
|.++|++|+|||+||+.++.. .... ..-+.++.+.+. . +.+.. .+..++|||++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~~---~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin 75 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGRP---VIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEIN 75 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTCE---EEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCG
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhcc---eEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcc
Confidence 678999999999999999872 2111 222344443332 0 00001 168899999996
Q ss_pred CCChHHHHHHHHhcc
Q 001145 253 NEDHEEWDKLRVSLS 267 (1141)
Q Consensus 253 ~~~~~~~~~l~~~l~ 267 (1141)
......+..+...+.
T Consensus 76 ~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 76 RAPPEVLESLLSLLE 90 (139)
T ss_dssp G--HHHHHTTHHHHS
T ss_pred cCCHHHHHHHHHHHh
Confidence 555555555655554
No 248
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.96 E-value=0.06 Score=66.98 Aligned_cols=169 Identities=17% Similarity=0.110 Sum_probs=90.9
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-----
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE----- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----- 229 (1141)
.++.|.+..++.|.+.+.-.-. ..+-...+-|.++|++|.|||++|+++++.. ...| +.+..++
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f---i~v~~~~l~~~~ 527 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF---IAVRGPEILSKW 527 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEehHHHhhcc
Confidence 4578888888877766542100 0011234568899999999999999999843 2233 1222111
Q ss_pred --chhHHHHH----HhcCcceeeeecCCCCC--------Ch----HHHHHHHHhccC--CCCCcEEEEEcCchHHH-Hhh
Q 001145 230 --DFNSQLRR----LLRGRRYLLVLDDVWNE--------DH----EEWDKLRVSLSD--GAEGSRVIVTTRSAKVA-TIV 288 (1141)
Q Consensus 230 --~~~~~l~~----~l~~k~~LlvlDdvw~~--------~~----~~~~~l~~~l~~--~~~gs~ilvTtr~~~v~-~~~ 288 (1141)
.....+++ .-...+.+|++|++..- .. .....+...+.. ...+.-||.||...... ..+
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al 607 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL 607 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence 01112333 33456799999998320 00 111223333332 12344456566544322 222
Q ss_pred ----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 289 ----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 289 ----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.-...+.+...+.++..++|+.+.-+ ....+. .-...+++.+.|.-
T Consensus 608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 608 LRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred cCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCcc--CCHHHHHHHcCCCC
Confidence 22347888888999999999765422 111111 11466777777654
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.073 Score=58.37 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=74.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCccc---------------------ccccceEEEEEeCc----------chhH-HH
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKV---------------------TKSFELKIWVCVNE----------DFNS-QL 235 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~~~~wv~~~~----------~~~~-~l 235 (1141)
-.+.+.++|+.|+||||+|+.+....-. ..|-| ..++.... .... .+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccccccccCCCcCHHHH
Confidence 4567889999999999999888652110 11223 23333211 1111 22
Q ss_pred H---HHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHhh-CCCCceeCCCCCHHHHH
Q 001145 236 R---RLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATIV-GTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 236 ~---~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~ 305 (1141)
+ +.+ .+++-++|+|++..-+......+...+.....++.+|++|.+. .+...+ ..-..+.+.+++.++..
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 2 222 2445566678887666666777777776544556677777664 343322 22347889999999998
Q ss_pred HHHhhc
Q 001145 306 TLFKQR 311 (1141)
Q Consensus 306 ~lf~~~ 311 (1141)
+.+...
T Consensus 179 ~~L~~~ 184 (325)
T PRK08699 179 AYLRER 184 (325)
T ss_pred HHHHhc
Confidence 888654
No 250
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.90 E-value=0.019 Score=60.79 Aligned_cols=40 Identities=33% Similarity=0.496 Sum_probs=32.2
Q ss_pred cccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHH
Q 001145 163 VVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLA 209 (1141)
Q Consensus 163 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v 209 (1141)
+-+|..+..--.++|.++ .+..|.+.|.+|.|||-||-++
T Consensus 226 i~prn~eQ~~ALdlLld~-------dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD-------DIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cCcccHHHHHHHHHhcCC-------CCCeEEeeccCCccHhHHHHHH
Confidence 345667777777888876 6789999999999999999655
No 251
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.89 E-value=0.011 Score=53.32 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=39.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|.+-..+.|++.+.+.-.....+++-|++.+|..|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4678887777777776665432334557889999999999999998888764
No 252
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0041 Score=37.10 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=11.7
Q ss_pred cCceEecCCCcccccchhhhc
Q 001145 565 SLRYLNMSNTLIERLPESICD 585 (1141)
Q Consensus 565 ~L~~L~L~~~~i~~lp~~i~~ 585 (1141)
+|++|||++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666555555443
No 253
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.023 Score=65.04 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=103.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc--ccc-----------------e
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK--SFE-----------------L 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~f~-----------------~ 221 (1141)
+++||.+--...|...+.... -..--...|+.|+||||+|+.++.-.-... ..+ -
T Consensus 16 ~evvGQe~v~~~L~nal~~~r------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 467999999999988887651 233556789999999999988865211111 110 0
Q ss_pred EEEEE-eCcchhHHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHH-hhCC
Q 001145 222 KIWVC-VNEDFNSQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVAT-IVGT 290 (1141)
Q Consensus 222 ~~wv~-~~~~~~~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~-~~~~ 290 (1141)
++-+. .|..--..++++. ++|--+.|+|.|+--....|..+..-+.......+.|..|.+ ..+.. ..+.
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSR 169 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR 169 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhc
Confidence 00000 0111001333332 455568899999777778888888877665555665555554 44443 2344
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 338 (1141)
.+.|.++.++.++-...+...+-.... ....+...-|++..+|..-
T Consensus 170 cq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 170 CQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred cccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCChh
Confidence 568999999999888888776632222 2233455666777766443
No 254
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.84 E-value=0.038 Score=51.79 Aligned_cols=57 Identities=28% Similarity=0.352 Sum_probs=21.2
Q ss_pred ccCCCCCCEEeEccCCCCccccc-cCCCCCCcCEEEEccCCCCCCcc-cccCCCCCccEEeec
Q 001145 941 IQNLSLLESLEISECHSLTVLPE-GIEGLTSLRSLSIENCENLAYIP-RGLGHLIALEHLTIM 1001 (1141)
Q Consensus 941 l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~ 1001 (1141)
+..+++|+.+.+.. . ...++. .|.++++|+.+.+.++ ...++ ..+.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 45555566665553 2 222322 4455555555555442 22222 234444455555554
No 255
>PRK13695 putative NTPase; Provisional
Probab=95.81 E-value=0.024 Score=56.39 Aligned_cols=22 Identities=41% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998653
No 256
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.77 E-value=0.046 Score=56.30 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=31.5
Q ss_pred HHHHHhcCcceeeeecCCCC----CChHHHHHHHHhccCCCCCcEEEEEcCchHHH
Q 001145 234 QLRRLLRGRRYLLVLDDVWN----EDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVA 285 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~----~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~ 285 (1141)
.+.+.|..+.=|++||.--. ......-.+...+... |.-|++.|-+-...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v 202 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHh
Confidence 46677888899999997421 2223333344444433 88899999885443
No 257
>PRK06696 uridine kinase; Validated
Probab=95.77 E-value=0.012 Score=61.17 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~la~~~~~~~----~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN----LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC----CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6677788888877531 23578999999999999999999986
No 258
>PRK04132 replication factor C small subunit; Provisional
Probab=95.70 E-value=0.1 Score=63.86 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=91.1
Q ss_pred cCcchHHHHHHHHHcCccccccc-ceEEEEEeCcchh-H----HHHHHhc------CcceeeeecCCCCCChHHHHHHHH
Q 001145 197 LGGIGKTTLAQLAYNDEKVTKSF-ELKIWVCVNEDFN-S----QLRRLLR------GRRYLLVLDDVWNEDHEEWDKLRV 264 (1141)
Q Consensus 197 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~----~l~~~l~------~k~~LlvlDdvw~~~~~~~~~l~~ 264 (1141)
+.++||||+|.+++++.- ...+ ..++-+.+++... . .+.+..+ .+.-++|+|++..-....+..+..
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk 652 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRR 652 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHH
Confidence 668999999999998421 1112 1356677776422 2 2333221 134799999998777778888888
Q ss_pred hccCCCCCcEEEEEcCc-hHHHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHH
Q 001145 265 SLSDGAEGSRVIVTTRS-AKVATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKA 342 (1141)
Q Consensus 265 ~l~~~~~gs~ilvTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 342 (1141)
.+......+++|.+|.+ ..+...+ .....+.+.+++.++-...+.+.+-.... ....+....|++.++|.+-.+..
T Consensus 653 ~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 653 TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 87764555666665554 4443332 23347999999999888877765532111 11234678999999998854443
No 259
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.057 Score=64.04 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=96.9
Q ss_pred CccccchHHH---HHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-chh--
Q 001145 161 SEVVGREEDK---EAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-DFN-- 232 (1141)
Q Consensus 161 ~~~vgr~~~~---~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~-- 232 (1141)
.++.|-++.+ ++++++|..+.. +-+..-++=|.++|++|.|||-||++++-... +-|++++. +|-
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSEFVEM 383 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHHHHHH
Confidence 4577877555 455566654411 11233467788999999999999999998544 23444442 222
Q ss_pred ------HHHHHHh----cCcceeeeecCCCCC---------------ChHHHHHHHHhccCCCCCc--EEEEEcCchHHH
Q 001145 233 ------SQLRRLL----RGRRYLLVLDDVWNE---------------DHEEWDKLRVSLSDGAEGS--RVIVTTRSAKVA 285 (1141)
Q Consensus 233 ------~~l~~~l----~~k~~LlvlDdvw~~---------------~~~~~~~l~~~l~~~~~gs--~ilvTtr~~~v~ 285 (1141)
..+++.+ ...++.+.+|++... ......++..-......+. -++-+|...++.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 1344443 455779999987321 1122333433333322223 233345444433
Q ss_pred Hh--h---CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHH
Q 001145 286 TI--V---GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 286 ~~--~---~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
.. + .-++.+.+..-+.....++|.-++-.... ..+..++++ |+...-|.+=|.
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~-~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL-DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC-CcchhhHHH-HHhcCCCCcHHH
Confidence 22 1 22447888888888899999888733222 233444555 888877777543
No 260
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.66 E-value=0.15 Score=53.79 Aligned_cols=168 Identities=19% Similarity=0.164 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc-----cccceEEEEEeCcchhH---------
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT-----KSFELKIWVCVNEDFNS--------- 233 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-----~~f~~~~wv~~~~~~~~--------- 233 (1141)
+.++++.++|..+. .....-+.|||..|+|||++++++....-.. ..+ .++.|......+.
T Consensus 44 ~~L~~L~~Ll~~P~----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 44 EALDRLEELLEYPK----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred HHHHHHHHHHhCCc----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHH
Confidence 44566666666541 2356689999999999999999998632111 112 2444444333322
Q ss_pred -----------------HHHHHhc-CcceeeeecCCCCC---ChHHHHHH---HHhccCCCCCcEEEEEcCchHHHHh--
Q 001145 234 -----------------QLRRLLR-GRRYLLVLDDVWNE---DHEEWDKL---RVSLSDGAEGSRVIVTTRSAKVATI-- 287 (1141)
Q Consensus 234 -----------------~l~~~l~-~k~~LlvlDdvw~~---~~~~~~~l---~~~l~~~~~gs~ilvTtr~~~v~~~-- 287 (1141)
...+.++ -+--++|+|++.+- ...+...+ ...+.+.-.-+-|.|-|+...-+-.
T Consensus 119 ~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 119 ALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred HhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 1223332 24458899999541 11222222 3334444455667777665332211
Q ss_pred ---hCCCCceeCCCCCHH-HHHHHHhhccc--CCCC-CCcCcchhhHHHHhhcCCchhHH
Q 001145 288 ---VGTIPPYYLKGLSHD-DCWTLFKQRAF--APGE-EYLNFLPVGKEIVKKCGGIPLAA 340 (1141)
Q Consensus 288 ---~~~~~~~~l~~l~~~-~~~~lf~~~~~--~~~~-~~~~~~~~~~~i~~~~~g~Plai 340 (1141)
.+...++.+..-..+ +...|+..... .-.. ..-...++++.|...++|+.=-+
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 111224555555444 34444433211 1111 22234568899999999987443
No 261
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.65 E-value=0.051 Score=50.96 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=35.8
Q ss_pred CCCCCCcCEEEEccCCCCCCc-ccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCc
Q 001145 965 IEGLTSLRSLSIENCENLAYI-PRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTL 1043 (1141)
Q Consensus 965 ~~~l~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 1043 (1141)
|.++++|+.+.+.. . ...+ ...+.++++|+.+.+.++ ........+.++++|+.+.+.+ .....-...+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44455555555542 1 2222 223445555555555542 2222333444554555555543 2211112234445555
Q ss_pred CeEeeccCCCCcccCcCCCCCCCcCEEeec
Q 001145 1044 QSLEIHSCPAFKDLPEWIGNLSSLTSLTIS 1073 (1141)
Q Consensus 1044 ~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~ 1073 (1141)
+.+.+..+ ....-...+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555432 111112334444 55555544
No 262
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.62 E-value=0.17 Score=54.34 Aligned_cols=143 Identities=22% Similarity=0.241 Sum_probs=84.9
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH------
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS------ 233 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~------ 233 (1141)
++.+.+|+.++..+..++...+ . .-+..|-|.|-.|.|||.+++++.+.... ..+|+++-+.+..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~--~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS--C--TIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC--c--ccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHH
Confidence 4678899999999998887652 1 23567799999999999999999985421 2468766443321
Q ss_pred ---------------------------HHHH--Hh--cCcceeeeecCCCCC---ChHHHHHHHHhccCCCCCcEEEEEc
Q 001145 234 ---------------------------QLRR--LL--RGRRYLLVLDDVWNE---DHEEWDKLRVSLSDGAEGSRVIVTT 279 (1141)
Q Consensus 234 ---------------------------~l~~--~l--~~k~~LlvlDdvw~~---~~~~~~~l~~~l~~~~~gs~ilvTt 279 (1141)
.+.+ .. +++.++||||++..- +..-...+...-.-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 1222 12 246899999998321 1111111111111111223444444
Q ss_pred Cc--hHHHHh-hCCCC--ceeCCCCCHHHHHHHHhhc
Q 001145 280 RS--AKVATI-VGTIP--PYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 280 r~--~~v~~~-~~~~~--~~~l~~l~~~~~~~lf~~~ 311 (1141)
-. +..... ++... ++....-+.+|-..++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43 233221 34433 5667888999998888764
No 263
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.60 E-value=0.026 Score=62.60 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.||||||+.+.-
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred eEEEECCCCccHHHHHHHHHc
Confidence 899999999999999999853
No 264
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.081 Score=59.93 Aligned_cols=150 Identities=18% Similarity=0.182 Sum_probs=82.5
Q ss_pred CccccchHHHHHHHHHHHhCCCC----C-CCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEE----EEeCcch
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS----G-FGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIW----VCVNEDF 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~----~-~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w----v~~~~~~ 231 (1141)
.++=|.++.+.++.+++..-.-. . +-..++-|.+||++|.|||.||+++++...+ .|-.+.- --++...
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf~~isApeivSGvSGES 267 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PFLSISAPEIVSGVSGES 267 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ceEeecchhhhcccCccc
Confidence 45778898888887776542100 0 1134567899999999999999999985332 2211110 0122333
Q ss_pred hHHHHHHh----cCcceeeeecCCCCCCh------HHH-----HHHHHhccC---C-CCCcEEEE---EcCchHHHHhhC
Q 001145 232 NSQLRRLL----RGRRYLLVLDDVWNEDH------EEW-----DKLRVSLSD---G-AEGSRVIV---TTRSAKVATIVG 289 (1141)
Q Consensus 232 ~~~l~~~l----~~k~~LlvlDdvw~~~~------~~~-----~~l~~~l~~---~-~~gs~ilv---Ttr~~~v~~~~~ 289 (1141)
...+++.+ ..-++++++|++.--.+ .+. .++...+.. . ..|-.|+| |+|...+-..+.
T Consensus 268 EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 268 EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 33555544 56789999999832110 111 112222211 1 12333444 666654433322
Q ss_pred ----CCCceeCCCCCHHHHHHHHhhcc
Q 001145 290 ----TIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 290 ----~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
-.+.+.+.--++....+++...+
T Consensus 348 RaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 348 RAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred ccccccceeeecCCchHHHHHHHHHHH
Confidence 23466777777777777776654
No 265
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.53 E-value=0.075 Score=52.55 Aligned_cols=97 Identities=19% Similarity=0.113 Sum_probs=54.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-cc--ccceEEEEEeCcc--------hhHHHHHHhcCcceeeeecCCCC-CChH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TK--SFELKIWVCVNED--------FNSQLRRLLRGRRYLLVLDDVWN-EDHE 257 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~--~f~~~~wv~~~~~--------~~~~l~~~l~~k~~LlvlDdvw~-~~~~ 257 (1141)
.+++|+|..|.|||||++.+..-... .+ .++..-...+.+. -...+.+.+..++-++++|+.-. -|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 38999999999999999999863221 11 1211100112222 12256777778888999998632 2333
Q ss_pred HHHHHHHhccCC-CC-CcEEEEEcCchHHHH
Q 001145 258 EWDKLRVSLSDG-AE-GSRVIVTTRSAKVAT 286 (1141)
Q Consensus 258 ~~~~l~~~l~~~-~~-gs~ilvTtr~~~v~~ 286 (1141)
....+...+... .. +..||++|.+.....
T Consensus 106 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 333343333321 12 255777777655444
No 266
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.50 E-value=0.058 Score=60.28 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=83.7
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc-------------------ccceE
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK-------------------SFELK 222 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 222 (1141)
.++|-+....++..+....+ +-...+.++|++|+||||+|..+.+...-.. ..+.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 46777888888888887552 1334699999999999999999876422111 12345
Q ss_pred EEEEeCcchh-----HHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHhh
Q 001145 223 IWVCVNEDFN-----SQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATIV 288 (1141)
Q Consensus 223 ~wv~~~~~~~-----~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~~ 288 (1141)
..+..++... ..+++.. .++.-++++|++.....+....+...+......+.+|++|.. ..+...+
T Consensus 77 lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI 156 (325)
T COG0470 77 LELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTI 156 (325)
T ss_pred EEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchh
Confidence 5555554433 1333332 256789999999655555566666666666677788887763 3333322
Q ss_pred -CCCCceeCCCCCHH
Q 001145 289 -GTIPPYYLKGLSHD 302 (1141)
Q Consensus 289 -~~~~~~~l~~l~~~ 302 (1141)
.....+++.+.+..
T Consensus 157 ~SRc~~i~f~~~~~~ 171 (325)
T COG0470 157 RSRCQRIRFKPPSRL 171 (325)
T ss_pred hhcceeeecCCchHH
Confidence 22235666663333
No 267
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.50 E-value=0.01 Score=67.68 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|.++.+++|++.|...... ....-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~g-l~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQG-LEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHh-cCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999998433111 122446999999999999999999987
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.47 E-value=0.067 Score=52.44 Aligned_cols=93 Identities=24% Similarity=0.221 Sum_probs=55.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEE---------------------E-eCcc--hhHHHHHHhcCccee
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWV---------------------C-VNED--FNSQLRRLLRGRRYL 245 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---------------------~-~~~~--~~~~l~~~l~~k~~L 245 (1141)
.+++|+|..|.|||||.+.++.... .....+++ . .|.. -...+.+.+-.++-+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 3899999999999999999976321 11111111 1 1111 112566677778889
Q ss_pred eeecCCCC-CChHHHHHHHHhccCC-CCCcEEEEEcCchHHH
Q 001145 246 LVLDDVWN-EDHEEWDKLRVSLSDG-AEGSRVIVTTRSAKVA 285 (1141)
Q Consensus 246 lvlDdvw~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~ 285 (1141)
+++|+.-. -|......+...+... ..|..||++|.+....
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99998632 2334444454444322 2366788888876543
No 269
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.087 Score=52.21 Aligned_cols=97 Identities=25% Similarity=0.238 Sum_probs=55.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-ccc---------------cceEEEEEeCcc------------h------hHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TKS---------------FELKIWVCVNED------------F------NSQL 235 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~---------------f~~~~wv~~~~~------------~------~~~l 235 (1141)
.+++|+|..|.|||||.+.++.-... .+. +...+.+. .++ + ...+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~-~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV-PQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE-cCCchhccchHHHHhhCHHHHHHHHH
Confidence 38999999999999999999763211 110 00111111 111 0 0145
Q ss_pred HHHhcCcceeeeecCCCC-CChHHHHHHHHhccCCCCCcEEEEEcCchHHHHh
Q 001145 236 RRLLRGRRYLLVLDDVWN-EDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATI 287 (1141)
Q Consensus 236 ~~~l~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~ 287 (1141)
.+.+-.++-++++|+... -|....+.+...+.....+..||++|.+......
T Consensus 108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 566667788999998643 2333344444444332335678888887666543
No 270
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.11 Score=63.16 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=72.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCC-CceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc----------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFG-RKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE---------- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~-~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---------- 229 (1141)
..++|.++.+..|.+.+.....+-.. .......+.|+.|+|||-||+++.. .+-+..+..+-+..++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhhhhhccCC
Confidence 35788888888888888765321111 2566888999999999999999876 2333334444444443
Q ss_pred -------chhHHHHHHhcCcce-eeeecCCCCCChHHHHHHHHhccCC
Q 001145 230 -------DFNSQLRRLLRGRRY-LLVLDDVWNEDHEEWDKLRVSLSDG 269 (1141)
Q Consensus 230 -------~~~~~l~~~l~~k~~-LlvlDdvw~~~~~~~~~l~~~l~~~ 269 (1141)
..-..+.+.++.++| +|.+|||...+......+...+..+
T Consensus 640 p~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 640 PPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred CcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 111278888888877 6668999776666666666666554
No 271
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.33 Score=49.42 Aligned_cols=153 Identities=17% Similarity=0.231 Sum_probs=86.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-hhH----------------------------HHHH-H
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-FNS----------------------------QLRR-L 238 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~----------------------------~l~~-~ 238 (1141)
..++.++|.-|.|||.+.++...... + +.++-+.+... ... .+.+ .
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 45999999999999999995433111 1 11111222211 000 1222 2
Q ss_pred hcCcc-eeeeecCCCCCChHHHHHHHHhccCCCCCc---EEEEEcCc--------hHHHHhhCCCCc-eeCCCCCHHHHH
Q 001145 239 LRGRR-YLLVLDDVWNEDHEEWDKLRVSLSDGAEGS---RVIVTTRS--------AKVATIVGTIPP-YYLKGLSHDDCW 305 (1141)
Q Consensus 239 l~~k~-~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs---~ilvTtr~--------~~v~~~~~~~~~-~~l~~l~~~~~~ 305 (1141)
.+++| ..+++||.........+.++........++ +|+..-.. ......-..... |++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 36777 899999986555555555544332222222 23322221 111111111123 899999999888
Q ss_pred HHHhhcccCCCCCCcCc-chhhHHHHhhcCCchhHHHHHhh
Q 001145 306 TLFKQRAFAPGEEYLNF-LPVGKEIVKKCGGIPLAAKALGS 345 (1141)
Q Consensus 306 ~lf~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plai~~~~~ 345 (1141)
.+++.+.-+.....+-+ .+....|..+..|.|.+|..++.
T Consensus 207 ~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 207 LYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88887764443333322 23567899999999999987765
No 272
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.41 E-value=0.059 Score=66.53 Aligned_cols=114 Identities=21% Similarity=0.182 Sum_probs=69.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHH----
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLR---- 236 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~---- 236 (1141)
..++|+...+..+.+.+..-. . ...-|.|+|..|+|||++|+.+++.... ... ..+.+.+..-....+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a--~---~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~~-~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA--Q---SDSTVLILGETGTGKELIARAIHNLSGR-NNR-RMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh--C---CCCCEEEECCCCcCHHHHHHHHHHhcCC-CCC-CeEEEecccCChhHhhhhhc
Confidence 368999988888877766431 1 2236889999999999999999874221 111 1222222211111111
Q ss_pred ----------------HHhcCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 237 ----------------RLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 237 ----------------~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
..-....-.++||+|..-.......+...+..+. .+.|||.||..
T Consensus 449 g~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred CcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 1112234569999997766677777777765432 24588888865
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.38 E-value=0.029 Score=55.30 Aligned_cols=21 Identities=43% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++.|+|.+|+||||++..+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH
Confidence 367999999999999999876
No 274
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.38 E-value=0.1 Score=53.04 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=52.8
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEE----------------EEE---e---CcchhHHHHHHhcCcceeeee
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKI----------------WVC---V---NEDFNSQLRRLLRGRRYLLVL 248 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----------------wv~---~---~~~~~~~l~~~l~~k~~Llvl 248 (1141)
+|.|+|+.|.||||+++.+..... ......+ ++. + ...+...++..++...=.+++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~ 80 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILV 80 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEE
Confidence 789999999999999987654211 0101111 111 1 123555777888777889999
Q ss_pred cCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHH
Q 001145 249 DDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVA 285 (1141)
Q Consensus 249 Ddvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~ 285 (1141)
|++ .+.+.+....... ..|-.++.|+-...+.
T Consensus 81 gEi--rd~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 81 GEM--RDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCC--CCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 999 3444444433322 2455577777655444
No 275
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.37 E-value=0.091 Score=59.08 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=35.8
Q ss_pred cCccccchHHHHHHHHHHHhC----C---CCCC----CCceEEEEEEecCcchHHHHHHHHHc
Q 001145 160 ESEVVGREEDKEAMIDLLASN----G---ASGF----GRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~----~---~~~~----~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+..++|.++.++.+...+... . .... ......|.++|++|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 456899999988886655210 0 0000 01135789999999999999999986
No 276
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.34 E-value=0.0059 Score=61.78 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=27.0
Q ss_pred CCCCCCEEeEccC--CCCccccccCCCCCCcCEEEEccCCCC--CCcccccCCCCCccEEeecCCCCC
Q 001145 943 NLSLLESLEISEC--HSLTVLPEGIEGLTSLRSLSIENCENL--AYIPRGLGHLIALEHLTIMYCPSL 1006 (1141)
Q Consensus 943 ~l~~L~~L~Ls~~--~~l~~~~~~~~~l~~L~~L~L~~~~~l--~~l~~~~~~l~~L~~L~l~~~~~~ 1006 (1141)
.+|+|+.|.+|.| +....++.....+|+|++|++++|.+- ..++ .+..+.+|..|++.+|...
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCcc
Confidence 4445555555554 333333332333455555555554332 1111 2334445555555555443
No 277
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.11 Score=59.80 Aligned_cols=151 Identities=17% Similarity=0.095 Sum_probs=84.4
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceE-------EEEEe
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELK-------IWVCV 227 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~-------~wv~~ 227 (1141)
+++=|.++-+.++.+...-... .-+-..++-|..+|++|.|||++|+++++. ....|-.+ .||--
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCeeeccCHHHHHHhcCc
Confidence 3455677666666654432210 011235778999999999999999999984 33444322 35555
Q ss_pred CcchhHHH-HHHhcCcceeeeecCCCCCC-------h----HHHHHHHHhccCCCCCcEEEE---EcCchHHHHhh-C--
Q 001145 228 NEDFNSQL-RRLLRGRRYLLVLDDVWNED-------H----EEWDKLRVSLSDGAEGSRVIV---TTRSAKVATIV-G-- 289 (1141)
Q Consensus 228 ~~~~~~~l-~~~l~~k~~LlvlDdvw~~~-------~----~~~~~l~~~l~~~~~gs~ilv---Ttr~~~v~~~~-~-- 289 (1141)
|+..-..+ +++-+--..++.+|.+..-. . ....++..-+........|+| |.|...+-..+ .
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence 54443222 22334456999999883210 0 112222222222222223433 44555444332 2
Q ss_pred -CCCceeCCCCCHHHHHHHHhhccc
Q 001145 290 -TIPPYYLKGLSHDDCWTLFKQRAF 313 (1141)
Q Consensus 290 -~~~~~~l~~l~~~~~~~lf~~~~~ 313 (1141)
.+..+.+..-+.+...++|+.++-
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHh
Confidence 344677777778888889998873
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.017 Score=53.85 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
--|.|.||+|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999863
No 279
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.15 E-value=0.1 Score=61.74 Aligned_cols=114 Identities=22% Similarity=0.212 Sum_probs=71.9
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cccccceEEEEEeCcchhHHHHHH
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VTKSFELKIWVCVNEDFNSQLRRL 238 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~l~~~ 238 (1141)
...++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.-. ....| +.|.+..-....+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~-----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~---v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA-----SDLNVLILGETGVGKELVARAIHAASPRADKPL---VYLNCAALPESLAESE 257 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC-----CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCe---EEEEcccCChHHHHHH
Confidence 35689999999998888876521 234688999999999999999987422 11222 3333332212222211
Q ss_pred h--------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 239 L--------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 239 l--------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
+ ....--++||+|..-....+..+...+..+. ...|||.||..
T Consensus 258 lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 258 LFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred hcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1 1122347999997666677778877775432 24588888865
No 280
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.07 E-value=0.1 Score=50.05 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHHhcC-cceeeeecCCCC---CChHHHHHHHHhccCCCCCcEEEEEcCchH
Q 001145 236 RRLLRG-RRYLLVLDDVWN---EDHEEWDKLRVSLSDGAEGSRVIVTTRSAK 283 (1141)
Q Consensus 236 ~~~l~~-k~~LlvlDdvw~---~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~ 283 (1141)
++.+.. +-=|+|||++-. ....+.+.+...+.....+..||+|.|...
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 334444 445999999821 122345567777776677889999999843
No 281
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.96 E-value=0.069 Score=58.47 Aligned_cols=44 Identities=32% Similarity=0.336 Sum_probs=33.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|.++.++.+.-.+... +..-+.+.|.+|+||||+|+.+..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~-------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP-------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc-------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 56899999888877555433 123588999999999999999854
No 282
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.94 E-value=0.052 Score=56.82 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=30.5
Q ss_pred EEEEEecCcchHHHHHHHHHcCccc--ccccceEEEEEeCcchh
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKV--TKSFELKIWVCVNEDFN 232 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~ 232 (1141)
.++|.|..|+|||+|+..+.++... +++-+..+++-+.+...
T Consensus 71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~r 114 (276)
T cd01135 71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITME 114 (276)
T ss_pred EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccH
Confidence 6799999999999999998875331 12346677877765443
No 283
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.94 E-value=0.1 Score=61.71 Aligned_cols=114 Identities=20% Similarity=0.164 Sum_probs=68.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cccccceEEEEEeCcchhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VTKSFELKIWVCVNEDFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~l~~~l 239 (1141)
..++|....+.++++.+..-.. .-.-|.|+|..|+||+++|++++..-. -.+.| +.+.+..-....+...+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pf---v~inca~~~~~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPF---LALNCASIPDDVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeccccCCHHHHHHHh
Confidence 3689998888888777654311 112478999999999999999875321 11222 23333322222222111
Q ss_pred --------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCch
Q 001145 240 --------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRSA 282 (1141)
Q Consensus 240 --------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 282 (1141)
....-.++||+|..-.......+...+..+. ...|||.||...
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 1223457899997767777777877776532 134788877653
No 284
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.90 E-value=0.03 Score=57.81 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=68.1
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc-------ccceEEEEEeC---c
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK-------SFELKIWVCVN---E 229 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~~---~ 229 (1141)
+..++|..-.++.|+..+.+.-.....+++-|++.+|..|+||.-.++.++++-...+ +|-.+.-..-. +
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie 160 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE 160 (344)
T ss_pred HHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHH
Confidence 4567888888888888777653334456788999999999999999999887532111 12111111000 2
Q ss_pred chhHHHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhcc
Q 001145 230 DFNSQLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLS 267 (1141)
Q Consensus 230 ~~~~~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~ 267 (1141)
++...+++.+ .-+|-|+|+|++......-.+.+...+.
T Consensus 161 ~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 161 DYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 2333444444 3468999999996555555566655554
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.90 E-value=0.059 Score=54.34 Aligned_cols=37 Identities=27% Similarity=0.225 Sum_probs=25.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEe
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCV 227 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 227 (1141)
++|+.++|+.|+||||.+-+++..... +-..+..++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecC
Confidence 369999999999999998877763222 2223455554
No 286
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.90 E-value=0.0011 Score=64.99 Aligned_cols=85 Identities=19% Similarity=0.132 Sum_probs=71.1
Q ss_pred cCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEE
Q 001145 537 FSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHL 616 (1141)
Q Consensus 537 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 616 (1141)
+..++..++||++.|.+..+-..|..++.|..|+++.|.|..+|+.++.+..+..+++..|. ...+|.++++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 56778888888888888877778888888888888888888888888888888888887654 77888888888888888
Q ss_pred EecCcc
Q 001145 617 MIYGCC 622 (1141)
Q Consensus 617 ~l~~~~ 622 (1141)
++-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 887774
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.89 E-value=0.14 Score=51.08 Aligned_cols=97 Identities=22% Similarity=0.157 Sum_probs=55.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-cc--------------ccce-EEEEEeCcc-------------h------hHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TK--------------SFEL-KIWVCVNED-------------F------NSQ 234 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~--------------~f~~-~~wv~~~~~-------------~------~~~ 234 (1141)
.+++|+|..|.|||||++.+...... .+ .+.. ..++.-... . ...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 38999999999999999999764211 11 0011 112211000 0 014
Q ss_pred HHHHhcCcceeeeecCCCCC-ChHHHHHHHHhccCCCCCcEEEEEcCchHHHH
Q 001145 235 LRRLLRGRRYLLVLDDVWNE-DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 235 l~~~l~~k~~LlvlDdvw~~-~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~ 286 (1141)
+.+.+-.++-++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 55666778889999987432 33333444444433234667888888766554
No 288
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.87 E-value=0.086 Score=51.82 Aligned_cols=78 Identities=21% Similarity=0.151 Sum_probs=47.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccc-cccceEEEEEeCcchh-----HHHHHH--------hcCcceeeeecCCCCC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVT-KSFELKIWVCVNEDFN-----SQLRRL--------LRGRRYLLVLDDVWNE 254 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~-----~~l~~~--------l~~k~~LlvlDdvw~~ 254 (1141)
..++.+.|+.|+|||.+|+.+.. ... +.....+-+..++-.. ..+.+. .....-+|+||++...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 46889999999999999999986 222 2333344444432211 011110 1112239999999776
Q ss_pred Ch-----------HHHHHHHHhccC
Q 001145 255 DH-----------EEWDKLRVSLSD 268 (1141)
Q Consensus 255 ~~-----------~~~~~l~~~l~~ 268 (1141)
.. ..|..+...+..
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHhcc
Confidence 77 678888777654
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.2 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+.++|+++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999875
No 290
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.79 E-value=0.12 Score=50.98 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=54.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcCc---ccccc---cc--eEEEEE---------eCcc-h-------------hHHHHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDE---KVTKS---FE--LKIWVC---------VNED-F-------------NSQLRRL 238 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~---------~~~~-~-------------~~~l~~~ 238 (1141)
.+++|+|+.|.|||||.+.+..+. .+... |. ...|+. .... . ...+.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara 101 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence 489999999999999999986321 11111 11 122321 0000 0 0145556
Q ss_pred hcCc--ceeeeecCCCC-CChHHHHHHHHhccCC-CCCcEEEEEcCchHHHH
Q 001145 239 LRGR--RYLLVLDDVWN-EDHEEWDKLRVSLSDG-AEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 239 l~~k--~~LlvlDdvw~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 286 (1141)
+-.+ .-++++|+.-. -+....+.+...+... ..|..||++|.+.....
T Consensus 102 l~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6666 77888898632 2333444444444321 24667888888876654
No 291
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.78 E-value=0.014 Score=34.77 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.7
Q ss_pred cccEEEccCCCCcccccccccc
Q 001145 542 YLRTLNLSGSGIKKLHSSISCL 563 (1141)
Q Consensus 542 ~Lr~L~L~~~~l~~lp~~i~~L 563 (1141)
+|++|||++|.++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 292
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.77 E-value=0.042 Score=60.05 Aligned_cols=37 Identities=30% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 169 DKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 169 ~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-..++++.+..-+ .+ ..+.|+|.+|+|||||++.+.+
T Consensus 119 ~~~RvID~l~PiG-----kG-QR~LIvG~pGtGKTTLl~~la~ 155 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KG-QRGLIVAPPRAGKTVLLQQIAA 155 (380)
T ss_pred hhHhhhhheeecC-----CC-ceEEEECCCCCCHHHHHHHHHH
Confidence 3455777777542 12 2568999999999999999877
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.76 E-value=0.1 Score=52.18 Aligned_cols=93 Identities=25% Similarity=0.212 Sum_probs=54.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEE---eCc-------------------------------------
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVC---VNE------------------------------------- 229 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~------------------------------------- 229 (1141)
.+++|+|..|.|||||++.++.... .....+++. +..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 3899999999999999999986421 111112111 100
Q ss_pred chhHHHHHHhcCcceeeeecCCCC-CChHHHHHHHHhccCCC-C-CcEEEEEcCchHHH
Q 001145 230 DFNSQLRRLLRGRRYLLVLDDVWN-EDHEEWDKLRVSLSDGA-E-GSRVIVTTRSAKVA 285 (1141)
Q Consensus 230 ~~~~~l~~~l~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~~-~-gs~ilvTtr~~~v~ 285 (1141)
.-...+.+.+...+-++++|+.-. -|....+.+...+.... . |..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 000145566677788999998632 23344444544443321 2 56788888776554
No 294
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.029 Score=55.42 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=35.0
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccc----eEEEEEeCcchhHHHHHHhcCcceeeeecCC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFE----LKIWVCVNEDFNSQLRRLLRGRRYLLVLDDV 251 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdv 251 (1141)
.|.|.|.+|+||||+|+.+.+...+ .|.+ .+.++.........++.++.... +|-|++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i-~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~--lv~d~i 63 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL-PHLDTGDILRAAIAERTELGEEIKKYIDKGE--LVPDEI 63 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-cEEcHhHHhHhhhccCChHHHHHHHHHHcCC--ccchHH
Confidence 4789999999999999999875221 1222 22223333444446666554444 555555
No 295
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.72 E-value=0.17 Score=51.44 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=54.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc------------cccc-ceEEEEEeCcch-------h---HHHHHHhcC----c
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV------------TKSF-ELKIWVCVNEDF-------N---SQLRRLLRG----R 242 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~------------~~~f-~~~~wv~~~~~~-------~---~~l~~~l~~----k 242 (1141)
++++|+|+.|.|||||.+.+.-...+ .-++ ....+.++.++. . ..+.+.+.. +
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 59999999999999999888632110 0011 112233332221 1 134444432 7
Q ss_pred ceeeeecCCCCC-ChHHHHH----HHHhccCCCCCcEEEEEcCchHHHHhh
Q 001145 243 RYLLVLDDVWNE-DHEEWDK----LRVSLSDGAEGSRVIVTTRSAKVATIV 288 (1141)
Q Consensus 243 ~~LlvlDdvw~~-~~~~~~~----l~~~l~~~~~gs~ilvTtr~~~v~~~~ 288 (1141)
+-++++|+.-.. +...... +...+. ..|..+|++|.+.+.+..+
T Consensus 106 p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 106 PVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred CeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 889999996321 2222222 222232 2367899999987777654
No 296
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.72 E-value=0.36 Score=49.44 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=99.5
Q ss_pred cccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC----cccccccceEEEEEeCcc--------
Q 001145 163 VVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND----EKVTKSFELKIWVCVNED-------- 230 (1141)
Q Consensus 163 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~----~~~~~~f~~~~wv~~~~~-------- 230 (1141)
+.++++....+....... ...-..++|+.|.||-|.+..+.+. --.+-+-+.+.|.+.+..
T Consensus 15 l~~~~e~~~~Lksl~~~~-------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG-------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred cccHHHHHHHHHHhcccC-------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 566666666666544422 4667889999999999988666542 111223445556544322
Q ss_pred --h------------h-HHHHHHh----c--------Ccce-eeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-
Q 001145 231 --F------------N-SQLRRLL----R--------GRRY-LLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS- 281 (1141)
Q Consensus 231 --~------------~-~~l~~~l----~--------~k~~-LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~- 281 (1141)
+ + ..+++.+ + .+.| ++|+-.+.+-..+....++.-...-...+|+|+..-+
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~ 167 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNST 167 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCc
Confidence 0 1 0222222 1 2333 5666666444556666666665555567787774433
Q ss_pred hHHHHhhC-CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 282 AKVATIVG-TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 282 ~~v~~~~~-~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
..+...+. .--.+++...+++|-...+++.+-..+-.-| .+++.+|+++++|.---..
T Consensus 168 SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 168 SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHH
Confidence 12222211 1225788999999999988887633332222 5689999999998764333
No 297
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.72 E-value=0.021 Score=53.62 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEecCcchHHHHHHHHHcC
Q 001145 192 IPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~ 212 (1141)
|.|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 298
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.15 Score=50.57 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=56.1
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-ccc--------------cce-EEEEEeCcch------------------hHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TKS--------------FEL-KIWVCVNEDF------------------NSQL 235 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~--------------f~~-~~wv~~~~~~------------------~~~l 235 (1141)
.+++|+|..|.|||||++.++..... .+. +.. ..++.-...+ ...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 38999999999999999999764211 110 011 1111111000 0145
Q ss_pred HHHhcCcceeeeecCCCC-CChHHHHHHHHhccCC-CCCcEEEEEcCchHHHHh
Q 001145 236 RRLLRGRRYLLVLDDVWN-EDHEEWDKLRVSLSDG-AEGSRVIVTTRSAKVATI 287 (1141)
Q Consensus 236 ~~~l~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~~ 287 (1141)
.+.+..++=++++|+.-. -|....+.+...+... ..|..||++|.+......
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 566777888999998632 2333334444444322 236678888888665543
No 299
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.19 Score=50.15 Aligned_cols=97 Identities=23% Similarity=0.222 Sum_probs=54.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-ccc-----------------c-ceEEEEEeCcch-------------------
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TKS-----------------F-ELKIWVCVNEDF------------------- 231 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~-----------------f-~~~~wv~~~~~~------------------- 231 (1141)
.+++|+|..|.|||||++.+...... .+. + ....++.-...+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~ 106 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQ 106 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHH
Confidence 38999999999999999999753111 010 0 011222111000
Q ss_pred -hHHHHHHhcCcceeeeecCCCC-CChHHHHHHHHhccCCC-C-CcEEEEEcCchHHHH
Q 001145 232 -NSQLRRLLRGRRYLLVLDDVWN-EDHEEWDKLRVSLSDGA-E-GSRVIVTTRSAKVAT 286 (1141)
Q Consensus 232 -~~~l~~~l~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~~-~-gs~ilvTtr~~~v~~ 286 (1141)
...+.+.+..++=++++|+.-. -|......+...+.... . |..||++|.+.....
T Consensus 107 qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 107 QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 0135556667788999998632 23444444444443221 2 567888877765544
No 300
>PRK07667 uridine kinase; Provisional
Probab=94.70 E-value=0.038 Score=55.95 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 170 KEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+.|.+.+.... +...+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~-----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK-----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665541 2347999999999999999999986
No 301
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.68 E-value=0.022 Score=51.50 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=18.6
Q ss_pred EEEEecCcchHHHHHHHHHcCcccccccc
Q 001145 192 IPIVGLGGIGKTTLAQLAYNDEKVTKSFE 220 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~ 220 (1141)
|.|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67899999999999999997 4556675
No 302
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.67 E-value=0.039 Score=60.06 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=21.6
Q ss_pred CceEEEEEEecCcchHHHHHHHHHc
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++.+++++.|-|||||||+|..+..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 4679999999999999998877654
No 303
>PTZ00301 uridine kinase; Provisional
Probab=94.66 E-value=0.028 Score=57.24 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998876
No 304
>PRK06547 hypothetical protein; Provisional
Probab=94.63 E-value=0.039 Score=54.26 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=22.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...+|+|.|++|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999863
No 305
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.60 E-value=0.023 Score=46.14 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 306
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.58 E-value=0.041 Score=59.35 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=39.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-------chhHHHHHHh---------cCcceeeeecC
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-------DFNSQLRRLL---------RGRRYLLVLDD 250 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-------~~~~~l~~~l---------~~k~~LlvlDd 250 (1141)
..+..++|||++|.|||.+|+++++... -.| +-+..++ +....+++.+ +++.++|++|+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg--~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG--IEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC--CCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 3578999999999999999999998433 222 2222221 1112333322 46799999999
Q ss_pred CC
Q 001145 251 VW 252 (1141)
Q Consensus 251 vw 252 (1141)
+.
T Consensus 221 ID 222 (413)
T PLN00020 221 LD 222 (413)
T ss_pred hh
Confidence 83
No 307
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.057 Score=52.09 Aligned_cols=109 Identities=20% Similarity=0.330 Sum_probs=58.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-----------------HHHHHHhcCcc---eeeeec
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-----------------SQLRRLLRGRR---YLLVLD 249 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-----------------~~l~~~l~~k~---~LlvlD 249 (1141)
..+.|.|+.|+|||||+++++.+. .+++++|..-. ....+.+.... |--|.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~--------~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~g 76 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD--------KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHG 76 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc--------CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcC
Confidence 488999999999999999999853 23344442211 14455554443 345666
Q ss_pred CCCCCChHHHHHHHHhccCCCCCcEEEEEcCch---HHHHhhCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 250 DVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA---KVATIVGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 250 dvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~---~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
|.|...... +...+. .|--||+-.--+ .+...+.....+-+.|-+.++...-+..+.
T Consensus 77 nyYGT~~~~---ve~~~~---~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg 136 (191)
T COG0194 77 NYYGTSREP---VEQALA---EGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRG 136 (191)
T ss_pred CcccCcHHH---HHHHHh---cCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC
Confidence 766543322 222222 233344433322 233334433355566777776666655543
No 308
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.57 E-value=0.088 Score=53.22 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=23.5
Q ss_pred EEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC
Q 001145 192 IPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN 228 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 228 (1141)
+.|.|.+|+|||+||.++....- ..=..++|++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECC
Confidence 67899999999999988755311 111335566554
No 309
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.26 Score=58.51 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=73.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEE-------EEEeCcc-hhHHHHHHhcCcceeeeecCCCC-----C
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKI-------WVCVNED-FNSQLRRLLRGRRYLLVLDDVWN-----E 254 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-------wv~~~~~-~~~~l~~~l~~k~~LlvlDdvw~-----~ 254 (1141)
..+.+-++|++|.|||.||+++++ .....|-.+. |+.-+.. .........+..++.|.+|.+.. .
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG 352 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCC
Confidence 556899999999999999999998 3333443222 2222211 11234444467899999999821 1
Q ss_pred C------hHHHHHHHHhccCCC--CCcEEEEEcCc-hHHHHhh----CCCCceeCCCCCHHHHHHHHhhccc
Q 001145 255 D------HEEWDKLRVSLSDGA--EGSRVIVTTRS-AKVATIV----GTIPPYYLKGLSHDDCWTLFKQRAF 313 (1141)
Q Consensus 255 ~------~~~~~~l~~~l~~~~--~gs~ilvTtr~-~~v~~~~----~~~~~~~l~~l~~~~~~~lf~~~~~ 313 (1141)
. .....++...+.... .+..||-||-. ..+-..+ .-...+.+..-+.++..+.|+.+.-
T Consensus 353 ~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 353 PSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 1 123334444443222 33334444433 3222221 2244788999999999999998873
No 310
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.36 Score=53.43 Aligned_cols=146 Identities=17% Similarity=0.125 Sum_probs=79.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceE-EEE-EeCcchhHHHHHHh--cCcceeeeecCCCCC------C----
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELK-IWV-CVNEDFNSQLRRLL--RGRRYLLVLDDVWNE------D---- 255 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv-~~~~~~~~~l~~~l--~~k~~LlvlDdvw~~------~---- 255 (1141)
+--.++|++|.|||+++.+++|... |+.. .-. .|..+. .+++.| ...|-+||+.|+.-. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n~--dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~ 309 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLDS--DLRHLLLATPNKSILLIEDIDCSFDLRERRKKKK 309 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCcH--HHHHHHHhCCCCcEEEEeeccccccccccccccc
Confidence 3456899999999999999998422 4422 112 222233 477777 455777788887321 0
Q ss_pred --------hHHHHHHHHhccC---CCCCcEEEE-EcCchHHH-Hh-hCC---CCceeCCCCCHHHHHHHHhhcccCCCCC
Q 001145 256 --------HEEWDKLRVSLSD---GAEGSRVIV-TTRSAKVA-TI-VGT---IPPYYLKGLSHDDCWTLFKQRAFAPGEE 318 (1141)
Q Consensus 256 --------~~~~~~l~~~l~~---~~~gs~ilv-Ttr~~~v~-~~-~~~---~~~~~l~~l~~~~~~~lf~~~~~~~~~~ 318 (1141)
.....-|..++.. ..-+-|||| ||-..+-. .+ +.. +..+.+.-=+.+....||.++...+.
T Consensus 310 ~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-- 387 (457)
T KOG0743|consen 310 ENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-- 387 (457)
T ss_pred ccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--
Confidence 0112223333321 111346655 55443221 11 221 22566777788888888888873322
Q ss_pred CcCcchhhHHHHhhcCCchhHHHHHhhh
Q 001145 319 YLNFLPVGKEIVKKCGGIPLAAKALGSL 346 (1141)
Q Consensus 319 ~~~~~~~~~~i~~~~~g~Plai~~~~~~ 346 (1141)
-.+++.+|.+.-.|.-+.-..++..
T Consensus 388 ---~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 388 ---DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ---CcchhHHHHHHhhcCccCHHHHHHH
Confidence 2345666666555554444444443
No 311
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.52 E-value=0.11 Score=52.95 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=28.0
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN 232 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 232 (1141)
.++|.|.+|+|||+|+..+.++.. -+..+++.+.+...
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~ 54 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGR 54 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHH
T ss_pred EEEEEcCcccccchhhHHHHhccc----ccceeeeeccccch
Confidence 688999999999999999987432 23346676665443
No 312
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.48 E-value=0.038 Score=57.06 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=18.9
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 3789999999999998877765
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.46 E-value=0.027 Score=57.23 Aligned_cols=21 Identities=48% Similarity=0.586 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
||+|.|.+|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 314
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.42 E-value=0.14 Score=50.78 Aligned_cols=96 Identities=26% Similarity=0.278 Sum_probs=54.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-cc---------------ccceEEEEEeCcch------------------hHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TK---------------SFELKIWVCVNEDF------------------NSQL 235 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~---------------~f~~~~wv~~~~~~------------------~~~l 235 (1141)
.+++|+|..|.|||||++.+..-... .+ .+...+.+ +.++. ...+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~-~~q~~~~~~~tv~~~lLS~G~~qrv~l 107 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY-LPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE-ECCCCccccCcHHHHCcCHHHHHHHHH
Confidence 38999999999999999999763211 01 00111111 11111 1145
Q ss_pred HHHhcCcceeeeecCCCC-CChHHHHHHHHhccCC-CCCcEEEEEcCchHHHH
Q 001145 236 RRLLRGRRYLLVLDDVWN-EDHEEWDKLRVSLSDG-AEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 236 ~~~l~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 286 (1141)
.+.+..++-++++|+... -|......+...+... ..|..||++|.+.....
T Consensus 108 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 566667778899998732 2333333444444321 23667888888766554
No 315
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.41 Score=47.83 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=80.5
Q ss_pred ccccc-hHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-
Q 001145 162 EVVGR-EEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS- 233 (1141)
Q Consensus 162 ~~vgr-~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~- 233 (1141)
++||. ++.+.+|.+.+.-+-. +-+-.+++-|.++|++|.|||-||++|++.. ..-|+.||..--.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgselvq 219 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELVQ 219 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHHHHH
Confidence 34554 6666666655432210 0012356788999999999999999999732 2445666643211
Q ss_pred --------HHHHHh----cCcceeeeecCCCCC-----------ChHHHHHH---HHhccC--CCCCcEEEEEcCchHHH
Q 001145 234 --------QLRRLL----RGRRYLLVLDDVWNE-----------DHEEWDKL---RVSLSD--GAEGSRVIVTTRSAKVA 285 (1141)
Q Consensus 234 --------~l~~~l----~~k~~LlvlDdvw~~-----------~~~~~~~l---~~~l~~--~~~gs~ilvTtr~~~v~ 285 (1141)
.+++.+ ..-+-.|..|.+.+. +.+..... ...+.. ..+.-+||++|..-++.
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 233322 334678888887331 12222222 223322 23566888877654443
Q ss_pred Hh--h---CCCCceeCCCCCHHHHHHHHhhcc
Q 001145 286 TI--V---GTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 286 ~~--~---~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.. + ..++-++..+-+++...++++-+.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 22 1 223467777777777777776554
No 316
>PRK04296 thymidine kinase; Provisional
Probab=94.34 E-value=0.17 Score=50.91 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=48.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEe--Ccc--------------------hhHHHHHHh---cCcce
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCV--NED--------------------FNSQLRRLL---RGRRY 244 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~--------------------~~~~l~~~l---~~k~~ 244 (1141)
.++.|+|..|.||||+|........ .+-..+..+.. ... ....+.+.+ .++.-
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKID 80 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCC
Confidence 3788999999999999987766321 11111121210 000 001122222 22445
Q ss_pred eeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH
Q 001145 245 LLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK 283 (1141)
Q Consensus 245 LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~ 283 (1141)
+||+|.+..-+.++...+...+. ..|..|++|.++..
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 89999984333333333444332 35778999988743
No 317
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.33 E-value=0.2 Score=49.53 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=32.2
Q ss_pred HHHHHhcCcceeeeecCCCCC-ChHHHHHHHHhccC-CCCCcEEEEEcCchHHHHhh
Q 001145 234 QLRRLLRGRRYLLVLDDVWNE-DHEEWDKLRVSLSD-GAEGSRVIVTTRSAKVATIV 288 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~~-~~~~~~~l~~~l~~-~~~gs~ilvTtr~~~v~~~~ 288 (1141)
.|.+.|.-++-++.+|..-+. |++--..+...... ...|--.++.|.....|..+
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 577788888889999998442 33333333333221 23565566666666666554
No 318
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.32 E-value=0.19 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999763
No 319
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.0021 Score=64.87 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccc-cccCCCCCCcCeE
Q 001145 968 LTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASL-PDELQHVTTLQSL 1046 (1141)
Q Consensus 968 l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L 1046 (1141)
+.+.++|+..+|.....- ....++.|+.|.|+-|.+... ..+..|++|++|+|..|.+...- -.-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456677777776654321 234677777777777776543 23556677777777776653211 1235566667777
Q ss_pred eeccCCCCcccCc-----CCCCCCCcCEEe
Q 001145 1047 EIHSCPAFKDLPE-----WIGNLSSLTSLT 1071 (1141)
Q Consensus 1047 ~l~~n~~~~~lp~-----~l~~l~~L~~L~ 1071 (1141)
.|..|+-.+.-+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7666665444332 223455555554
No 320
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.28 E-value=0.034 Score=57.36 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=22.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+..+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 321
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.27 E-value=0.044 Score=59.25 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4788889999999999987764
No 322
>PRK08233 hypothetical protein; Provisional
Probab=94.26 E-value=0.033 Score=56.02 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999999863
No 323
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.26 E-value=0.19 Score=51.05 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHhcCcceeeeecCCCC-CChHHHHHHHHhccCC--CCCcEEEEEcCchHHHHhh
Q 001145 234 QLRRLLRGRRYLLVLDDVWN-EDHEEWDKLRVSLSDG--AEGSRVIVTTRSAKVATIV 288 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~--~~gs~ilvTtr~~~v~~~~ 288 (1141)
.+.+.+-..+-+|+.|+--. -|...-+.+...+... ..|..||+.|.+..+|..+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 46666777788899997421 1223333444444332 3577899999999999864
No 324
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.09 Score=54.77 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=41.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCccc--ccccceEEEEEeCc--chh--------------HHHHHHhcCcc--eeeee
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKV--TKSFELKIWVCVNE--DFN--------------SQLRRLLRGRR--YLLVL 248 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~--~~~--------------~~l~~~l~~k~--~Llvl 248 (1141)
-++|.++|++|.|||+|.+++++...+ ...|....-+.++. -|. ..+++.+.++. +.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 478999999999999999999986544 34555544444431 111 14566665554 34557
Q ss_pred cCC
Q 001145 249 DDV 251 (1141)
Q Consensus 249 Ddv 251 (1141)
|.|
T Consensus 257 DEV 259 (423)
T KOG0744|consen 257 DEV 259 (423)
T ss_pred HHH
Confidence 887
No 325
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.23 E-value=0.24 Score=58.49 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=68.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-ccccceEEEEEeCcchhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-TKSFELKIWVCVNEDFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~l~~~l 239 (1141)
..++|+...+.++.+.+.... ..-..|.|.|.+|+|||++|+.++..-.. ...| +.+.+..-....+...+
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~-----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~---i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS-----RSSISVLINGESGTGKELVAHALHRHSPRAKAPF---IALNMAAIPKDLIESEL 209 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh-----ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCe---EeeeCCCCCHHHHHHHh
Confidence 358898888888777765431 12236789999999999999999874221 1222 23333222222233222
Q ss_pred --------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 240 --------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 240 --------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
....--++||++..-.......+...+..+. ...|||+||..
T Consensus 210 fg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 210 FGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred cCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 1112357889997666677777777765432 12388988865
No 326
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.21 E-value=0.23 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 327
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.11 Score=58.35 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|+|..|+|||||++.++..
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC
Confidence 47899999999999999999863
No 328
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.15 E-value=0.039 Score=56.68 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|+|++|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 329
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.033 Score=54.83 Aligned_cols=24 Identities=46% Similarity=0.529 Sum_probs=21.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
.+|+|-||-|+||||||+.+.+..
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHh
Confidence 589999999999999999999843
No 330
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.10 E-value=0.19 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 331
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.07 E-value=0.041 Score=54.94 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=26.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEE
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWV 225 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 225 (1141)
...+|.+.|+.|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 345999999999999999999987 333344444444
No 332
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.06 E-value=0.069 Score=57.50 Aligned_cols=52 Identities=29% Similarity=0.468 Sum_probs=43.3
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+..++|.++.++++++.+.... .+.+.+-+++.++|+.|.||||||..+.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA-~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAA-QGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHH-hccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999887653 23345668999999999999999999876
No 333
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.04 E-value=0.35 Score=51.02 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=80.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc-ccccccceEEEEEeCcch--------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE-KVTKSFELKIWVCVNEDF-------- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~-------- 231 (1141)
..++|-.++...+-.++...-. .+ +..-|.|+|+.|.|||+|...+..+. +...+| .-|......
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~g-EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HG-ESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALK 97 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hc-CCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHH
Confidence 3578888888888777765411 11 23367899999999999998887751 222333 233332211
Q ss_pred --------------------hH---HHHHHhc------CcceeeeecCCCCCCh-HHHHHHHHhc---c-CCCCCcEEEE
Q 001145 232 --------------------NS---QLRRLLR------GRRYLLVLDDVWNEDH-EEWDKLRVSL---S-DGAEGSRVIV 277 (1141)
Q Consensus 232 --------------------~~---~l~~~l~------~k~~LlvlDdvw~~~~-~~~~~l~~~l---~-~~~~gs~ilv 277 (1141)
.. .+-..|+ +.++.+|+|.+.-.-. ....-+...| . ...|-+-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 11 1222222 2368888887732211 1111122222 1 1345677788
Q ss_pred EcCchH-------HHHhhCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 278 TTRSAK-------VATIVGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 278 Ttr~~~-------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
|||-.- |-.......++-+..++-++...++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 999632 22222222355667778888888887765
No 334
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=0.0036 Score=63.17 Aligned_cols=99 Identities=20% Similarity=0.130 Sum_probs=51.0
Q ss_pred CCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc--cCCCCCCcCE
Q 001145 896 NPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE--GIEGLTSLRS 973 (1141)
Q Consensus 896 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~--~~~~l~~L~~ 973 (1141)
+.+.++|+..+|... .+. ....++.|+.|.|+-|.+.+.- .+..|++|++|.|..|.+.. +.+ .+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 445566666666532 221 1345666666666666654332 25566666666666655322 221 3456666666
Q ss_pred EEEccCCCCCCccc-----ccCCCCCccEEe
Q 001145 974 LSIENCENLAYIPR-----GLGHLIALEHLT 999 (1141)
Q Consensus 974 L~L~~~~~l~~l~~-----~~~~l~~L~~L~ 999 (1141)
|.|..|+-....+. .+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666554433221 233455555553
No 335
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.03 E-value=0.054 Score=58.57 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|.|-|||||||+|-.+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 4788999999999999977764
No 336
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.02 E-value=0.33 Score=49.86 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=54.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCccc--cc-----------ccceEEEEEeCc---------chhHHHH---HH--hcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKV--TK-----------SFELKIWVCVNE---------DFNSQLR---RL--LRG 241 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~--~~-----------~f~~~~wv~~~~---------~~~~~l~---~~--l~~ 241 (1141)
.+++.|+|+.|.||||+.+.+...... .+ .|+. +...... .|...++ .. +..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~-i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~ 107 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDK-IFTRMSSRESVSSGQSAFMIDLYQVSKALRLAT 107 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeee-eeeeeCCccChhhccchHHHHHHHHHHHHHhCC
Confidence 378999999999999999988631100 01 1111 1111111 1222222 22 247
Q ss_pred cceeeeecCCCCCC-hHHH----HHHHHhccCC-CCCcEEEEEcCchHHHHhh
Q 001145 242 RRYLLVLDDVWNED-HEEW----DKLRVSLSDG-AEGSRVIVTTRSAKVATIV 288 (1141)
Q Consensus 242 k~~LlvlDdvw~~~-~~~~----~~l~~~l~~~-~~gs~ilvTtr~~~v~~~~ 288 (1141)
++-|+++|..-.-. ..+. ..+...+... ..+..+|++|...+++...
T Consensus 108 ~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 108 RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 78999999985422 1111 1222333322 2345799999988877654
No 337
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.02 E-value=0.13 Score=53.21 Aligned_cols=76 Identities=8% Similarity=0.130 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-hcccHHHHHHHHHHHHHHhhhhhhHHHh
Q 001145 8 PLLQVIFDKVASGLLKSIALKFGYEEEIDKLRHTINLIRAVVEDAEER-QVREKALKIWLADLKEVAYDVDNLLDEF 83 (1141)
Q Consensus 8 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~-~~~~~~~~~wl~~l~~~~~d~ed~ld~~ 83 (1141)
+.|.+++.++-++.........-++.+++-++.+++.+|.||+...+. .........+..++-..||++|.++|.+
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 467777777777766666666678899999999999999999987443 4444458889999999999999999986
No 338
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.082 Score=60.98 Aligned_cols=62 Identities=21% Similarity=0.147 Sum_probs=44.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch-------h----HHHHHHhcCcceeeeecCC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF-------N----SQLRRLLRGRRYLLVLDDV 251 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-------~----~~l~~~l~~k~~LlvlDdv 251 (1141)
..-|.|.|+.|+|||+||+++++... +...-.+..|..+.-- . ..+.+.+.-.+-+|||||+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDL 503 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcch
Confidence 34788999999999999999998543 4444455666655311 1 1344556778999999998
No 339
>PRK06762 hypothetical protein; Provisional
Probab=93.94 E-value=0.04 Score=54.38 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 340
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.92 E-value=0.042 Score=55.57 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.3
Q ss_pred CCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 186 GRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 186 ~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++..|.++||+|.||||..+.++..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 346678999999999999999999874
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.92 E-value=0.36 Score=47.49 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=53.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-ccc--cc---eEEEEEeCc---------c--------h------hHHHHHHhc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-TKS--FE---LKIWVCVNE---------D--------F------NSQLRRLLR 240 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~---------~--------~------~~~l~~~l~ 240 (1141)
.+++|+|..|.|||||++.+...... .+. ++ ...++.-.. . + ...+.+.+-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 38999999999999999999874221 111 11 111111000 0 0 014556666
Q ss_pred CcceeeeecCCCC-CChHHHHHHHHhccCCCCCcEEEEEcCchHHHH
Q 001145 241 GRRYLLVLDDVWN-EDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 241 ~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~ 286 (1141)
.++=++++|+--. -|......+...+... +..||++|.+.....
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 7788899998632 2333444444444432 356777777765543
No 342
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.92 E-value=0.23 Score=60.95 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=68.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cccccceEEEEEeCcchhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VTKSFELKIWVCVNEDFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~l~~~l 239 (1141)
+.++|....+.++.+.+..-.. ...-|.|+|..|+||+++|+.+++.-. ....| +.|.+..-....+...+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~-----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pf---v~vnc~~~~~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK-----SSFPVLLCGEEGVGKALLAQAIHNESERAAGPY---IAVNCQLYPDEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC-----cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCe---EEEECCCCChHHHHHHh
Confidence 3578988888888777765421 122478999999999999999987321 11222 23333222222222211
Q ss_pred -----------------cCcceeeeecCCCCCChHHHHHHHHhccCCC---C--------CcEEEEEcCc
Q 001145 240 -----------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA---E--------GSRVIVTTRS 281 (1141)
Q Consensus 240 -----------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~---~--------gs~ilvTtr~ 281 (1141)
....-.|+||++..-....+..+...+..+. . ..+||.||..
T Consensus 397 fg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 1122358999997666677777877775432 1 3467777654
No 343
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.90 E-value=0.073 Score=56.51 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=18.1
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999999863
No 344
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.87 E-value=0.081 Score=60.15 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=27.7
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE 229 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 229 (1141)
.++|.|.+|+|||||+.++.+.... .+-+.++++-+.+
T Consensus 145 R~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGE 182 (461)
T PRK12597 145 KTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGE 182 (461)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCc
Confidence 7899999999999999888764321 2446666666553
No 345
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.87 E-value=0.43 Score=58.04 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=77.8
Q ss_pred CccccchHHHHHHHHHHH---hCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc------
Q 001145 161 SEVVGREEDKEAMIDLLA---SNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE------ 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~---~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------ 229 (1141)
.++.|.+..++++.+.+. .... .-...-.+-|.++|++|.|||++|+.+..... ..| +.+..++
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f---~~is~~~~~~~~~ 226 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSDFVEMFV 226 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCE---EEEehHHhHHhhh
Confidence 356777766665554432 2100 00011233589999999999999999987432 222 1222211
Q ss_pred -----chhHHHHHHhcCcceeeeecCCCCC----------ChHHHHHHHHh----ccC--CCCCcEEEEEcCchHHHH-h
Q 001145 230 -----DFNSQLRRLLRGRRYLLVLDDVWNE----------DHEEWDKLRVS----LSD--GAEGSRVIVTTRSAKVAT-I 287 (1141)
Q Consensus 230 -----~~~~~l~~~l~~k~~LlvlDdvw~~----------~~~~~~~l~~~----l~~--~~~gs~ilvTtr~~~v~~-~ 287 (1141)
.....+.......++++++|+++.- ....+...... +.. ...+.-+|.||...+... .
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 0111233333456789999998431 01122222222 221 123445555776544322 2
Q ss_pred h----CCCCceeCCCCCHHHHHHHHhhcc
Q 001145 288 V----GTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 288 ~----~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
+ .-.+.+.+...+.++..++++.+.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 2 123467788888888888888765
No 346
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.86 E-value=0.084 Score=48.85 Aligned_cols=40 Identities=25% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
++..++.+.|...- ..-.+|.+.|.-|.||||+++.+...
T Consensus 6 ~~t~~l~~~l~~~l-----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL-----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC-----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555554331 12248999999999999999999874
No 347
>PRK03839 putative kinase; Provisional
Probab=93.86 E-value=0.04 Score=55.25 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 348
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.85 E-value=0.087 Score=57.04 Aligned_cols=44 Identities=27% Similarity=0.233 Sum_probs=32.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS 233 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 233 (1141)
.-+++-|+|++|+||||||.+++.. ....-..++|+...+.++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 3468899999999999999988753 2233346778877666654
No 349
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.84 E-value=0.33 Score=50.20 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999975
No 350
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.84 E-value=0.34 Score=51.62 Aligned_cols=69 Identities=26% Similarity=0.272 Sum_probs=44.3
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcc-c-----------ccccceEEEEEeC----cchhHHHHHHhcCcceeeeecCCCC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEK-V-----------TKSFELKIWVCVN----EDFNSQLRRLLRGRRYLLVLDDVWN 253 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~-~-----------~~~f~~~~wv~~~----~~~~~~l~~~l~~k~~LlvlDdvw~ 253 (1141)
.+|.|.|..|.||||+++.+.+... . .-.+....++.+. .++...++..++...=.++++++
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi-- 158 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI-- 158 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC--
Confidence 3899999999999999987754210 0 0011222233333 24556788888888889999999
Q ss_pred CChHHHH
Q 001145 254 EDHEEWD 260 (1141)
Q Consensus 254 ~~~~~~~ 260 (1141)
.+.+...
T Consensus 159 R~~e~a~ 165 (264)
T cd01129 159 RDAETAE 165 (264)
T ss_pred CCHHHHH
Confidence 4444433
No 351
>PHA02774 E1; Provisional
Probab=93.83 E-value=0.19 Score=57.92 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=37.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHhcCcceeeeecCC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLLRGRRYLLVLDDV 251 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdv 251 (1141)
-..+.|+|++|.|||.+|..+.+-. . -....|+.....|- -+-+.+.+ ++|+||+
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L--~--G~vi~fvN~~s~Fw---Lqpl~d~k-i~vlDD~ 488 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFL--K--GKVISFVNSKSHFW---LQPLADAK-IALLDDA 488 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh--C--CCEEEEEECccccc---cchhccCC-EEEEecC
Confidence 4589999999999999999998732 1 22345666554442 22334444 6899999
No 352
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.82 E-value=0.11 Score=54.78 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=32.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCccccc----ccceEEEEEeCcchh
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTK----SFELKIWVCVNEDFN 232 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~ 232 (1141)
-.++.|+|.+|+|||+||.+++-...... .-..++|+...+.+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~ 66 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR 66 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcC
Confidence 46999999999999999999974322222 135788998877654
No 353
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.79 E-value=0.23 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999753
No 354
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.052 Score=54.36 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=22.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++.+|+|.|.+|.||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 355
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.34 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 356
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.26 Score=49.23 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=33.7
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.++-|.+-.+.+|.+...-.-. .-+-..++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3455666666665554332100 001234677889999999999999999985
No 357
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.24 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 358
>PRK04040 adenylate kinase; Provisional
Probab=93.72 E-value=0.048 Score=54.67 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 359
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.3 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|..|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999975
No 360
>PRK00625 shikimate kinase; Provisional
Probab=93.71 E-value=0.042 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 361
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.68 E-value=0.28 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999763
No 362
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.66 E-value=0.081 Score=55.32 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+..+|+|.|+.|.|||||++.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999886
No 363
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.63 E-value=0.11 Score=54.28 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=30.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN 228 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 228 (1141)
-.++.|+|.+|+|||++|.+++... ...-..++|+...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC
Confidence 4699999999999999999987632 2234568898887
No 364
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=93.61 E-value=0.33 Score=56.95 Aligned_cols=113 Identities=21% Similarity=0.189 Sum_probs=69.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC---------cccccccceEEEEEeCcch
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND---------EKVTKSFELKIWVCVNEDF 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~---------~~~~~~f~~~~wv~~~~~~ 231 (1141)
..++|....+.++.+.+..-.. ...-|.|.|..|+||+++|+.+++. .+....| +-+.+..-.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~-----s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pf---v~inCaal~ 290 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR-----SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPF---VAVNCGAIA 290 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC-----CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCe---EEeecccCC
Confidence 3589999888888887764311 2236889999999999999999874 2222222 222222111
Q ss_pred hHHHHHHh---------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEc
Q 001145 232 NSQLRRLL---------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTT 279 (1141)
Q Consensus 232 ~~~l~~~l---------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 279 (1141)
...+...| ....--|+||++.+-....+..+...+..+. ...|||.+|
T Consensus 291 e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 291 ESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred hhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 22222221 1112368999997666677777877775432 123788877
Q ss_pred Cc
Q 001145 280 RS 281 (1141)
Q Consensus 280 r~ 281 (1141)
..
T Consensus 371 ~~ 372 (538)
T PRK15424 371 HC 372 (538)
T ss_pred CC
Confidence 43
No 365
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.38 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++.-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999763
No 366
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.59 E-value=4.5 Score=49.47 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=32.8
Q ss_pred HHHHHhcCcceeeeecCCCCC-ChHHHHHHHHhccCC-CCCcEEEEEcCchHHHH
Q 001145 234 QLRRLLRGRRYLLVLDDVWNE-DHEEWDKLRVSLSDG-AEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~~-~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 286 (1141)
.+.+.+-.++-+++||..-+. |...=..+...+... ...+.|+||-|...+..
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 577788889999999987332 222222344444322 23578888888876653
No 367
>PRK15115 response regulator GlrR; Provisional
Probab=93.57 E-value=0.49 Score=55.47 Aligned_cols=114 Identities=20% Similarity=0.126 Sum_probs=65.7
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh--
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL-- 239 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l-- 239 (1141)
.++|....+.++.+....-. .....|.|.|.+|+|||++|+.+.+...... ...+.+.+..-....+...+
T Consensus 135 ~lig~s~~~~~~~~~~~~~a-----~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~--~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA-----QSDVSVLINGQSGTGKEILAQAIHNASPRAS--KPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhc-----cCCCeEEEEcCCcchHHHHHHHHHHhcCCCC--CCeEEEeCCCCCHHHHHHHhcC
Confidence 46777777766665544321 1123567999999999999999987422111 11222222221112222221
Q ss_pred ------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCch
Q 001145 240 ------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRSA 282 (1141)
Q Consensus 240 ------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 282 (1141)
....-.++||++..-....+..+...+..+. ...|||.||...
T Consensus 208 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 208 HARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 1223468999997666677777777765432 135888888653
No 368
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.52 E-value=0.21 Score=52.54 Aligned_cols=42 Identities=19% Similarity=0.083 Sum_probs=28.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF 231 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 231 (1141)
.-+++.|+|.+|+|||++|.++.... .+ +=..++|++..+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~~ 65 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENTS 65 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCCH
Confidence 34689999999999999999985421 11 22346666665444
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.28 Score=47.38 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+.|.|+.|+|||||.+.++-
T Consensus 30 ~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 788999999999999999964
No 370
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.52 E-value=0.12 Score=58.67 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|.|.+|+|||||+.++..
T Consensus 146 R~gIfa~~GvGKt~Ll~~i~~ 166 (463)
T PRK09280 146 KIGLFGGAGVGKTVLIQELIN 166 (463)
T ss_pred EEEeecCCCCChhHHHHHHHH
Confidence 789999999999999988754
No 371
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.49 E-value=0.16 Score=57.37 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|+|..|+|||||++.+++.
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~ 181 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARN 181 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999874
No 372
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.47 E-value=0.39 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|+.|.|||||++.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999763
No 373
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.47 E-value=0.16 Score=57.41 Aligned_cols=61 Identities=30% Similarity=0.463 Sum_probs=42.0
Q ss_pred EEEEEecCcchHHHHH-HHHHcCccc-----ccccceEEEEEeCcchhH-------------------------------
Q 001145 191 VIPIVGLGGIGKTTLA-QLAYNDEKV-----TKSFELKIWVCVNEDFNS------------------------------- 233 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~------------------------------- 233 (1141)
.++|.|..|+|||+|| ..+.+...+ .++-+..+++-+.+..+.
T Consensus 191 R~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r 270 (574)
T PTZ00185 191 RELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQ 270 (574)
T ss_pred EEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHH
Confidence 6789999999999997 666664322 123345677766554332
Q ss_pred --------HHHHHh--cCcceeeeecCC
Q 001145 234 --------QLRRLL--RGRRYLLVLDDV 251 (1141)
Q Consensus 234 --------~l~~~l--~~k~~LlvlDdv 251 (1141)
.+.+++ +++.+|+|+||+
T Consensus 271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 271 YLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 344555 578999999998
No 374
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.45 E-value=0.51 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++++++|++|+||||++..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999998887765
No 375
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.32 Score=47.36 Aligned_cols=95 Identities=26% Similarity=0.288 Sum_probs=55.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEE---------------------eCcch--hHHHHHHhcCcceee
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVC---------------------VNEDF--NSQLRRLLRGRRYLL 246 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------------~~~~~--~~~l~~~l~~k~~Ll 246 (1141)
.+++|+|..|.|||||++.+...... ....+++. .|... ...+.+.+....-++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 48999999999999999999874221 11122211 11111 124566667778899
Q ss_pred eecCCCCC-ChHHHHHHHHhccCC-CCCcEEEEEcCchHHHHh
Q 001145 247 VLDDVWNE-DHEEWDKLRVSLSDG-AEGSRVIVTTRSAKVATI 287 (1141)
Q Consensus 247 vlDdvw~~-~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~~ 287 (1141)
++|+.-.. |......+...+... ..+..++++|.+......
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99987321 233333443333321 124568888877665544
No 376
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.44 E-value=0.11 Score=51.73 Aligned_cols=97 Identities=28% Similarity=0.318 Sum_probs=54.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC---cccccccc-----------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND---EKVTKSFE----------------- 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~---~~~~~~f~----------------- 220 (1141)
.+++|.+..+..+.-...+. +-+.++|.+|+|||++|+.+-.= .......+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~---------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~ 73 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG---------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLI 73 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC-----------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEE
T ss_pred hhhcCcHHHHHHHHHHHcCC---------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCcee
Confidence 46889888888776555432 47889999999999999998541 00011111
Q ss_pred -eEEEEEeCcchhHHHHHHh------------cCcceeeeecCCCCCChHHHHHHHHhccC
Q 001145 221 -LKIWVCVNEDFNSQLRRLL------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSD 268 (1141)
Q Consensus 221 -~~~wv~~~~~~~~~l~~~l------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~ 268 (1141)
.+-|....+... ....+ ...+=++.||++-.-+....+.++.++..
T Consensus 74 ~~~Pfr~phhs~s--~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 74 RQRPFRAPHHSAS--EAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLED 132 (206)
T ss_dssp E---EEEE-TT----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred cCCCcccCCCCcC--HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHC
Confidence 111222222221 12222 23456888999876667777888888765
No 377
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.43 E-value=0.29 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+++++|++|+||||++..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 378
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.41 E-value=0.17 Score=57.00 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|.|..|+|||||.+.+++.
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~ 185 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRS 185 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcC
Confidence 47899999999999999999874
No 379
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.38 E-value=0.057 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|+|+|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999985
No 380
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.37 Score=48.19 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEEecCcchHHHHHHHHHcCc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
+-+|.|+.|.||||||..+.-++
T Consensus 32 vhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 88899999999999999997764
No 381
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.37 E-value=0.33 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++..
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 382
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.36 E-value=0.39 Score=48.17 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999763
No 383
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.34 E-value=0.11 Score=58.68 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=28.9
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED 230 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 230 (1141)
.++|.|.+|+|||+|+.++..+.. +.+-+.++++-+.+.
T Consensus 140 r~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR 178 (449)
T TIGR03305 140 KAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGER 178 (449)
T ss_pred EEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccC
Confidence 689999999999999999876532 222367777766543
No 384
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.33 E-value=0.37 Score=49.17 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=55.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcCc--c-cccc--c--------------ceEEEEEeCcchh------------------
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDE--K-VTKS--F--------------ELKIWVCVNEDFN------------------ 232 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~--~-~~~~--f--------------~~~~wv~~~~~~~------------------ 232 (1141)
.+++|+|..|.|||||.+.+.... . ..+. | ...+++ +.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~~~~L 105 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYVNEGF 105 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhccccC
Confidence 489999999999999999998741 1 1110 0 011211 111110
Q ss_pred -------HHHHHHhcCcceeeeecCCCC-CChHHHHHHHHhccCC-CCCcEEEEEcCchHHHH
Q 001145 233 -------SQLRRLLRGRRYLLVLDDVWN-EDHEEWDKLRVSLSDG-AEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 233 -------~~l~~~l~~k~~LlvlDdvw~-~~~~~~~~l~~~l~~~-~~gs~ilvTtr~~~v~~ 286 (1141)
..+.+.+-.++-++++|+.-. -|....+.+...+... ..|..||++|.+.....
T Consensus 106 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 045556667788999998632 2334444444444322 23567888887766554
No 385
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.31 E-value=0.065 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|+|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988765
No 386
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.29 E-value=0.13 Score=55.68 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=30.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS 233 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 233 (1141)
.-+++-|+|++|+||||||.++... ....-..++|+...+.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence 3469999999999999999887653 2223345667766655543
No 387
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.27 E-value=0.43 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999864
No 388
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.27 E-value=0.61 Score=54.31 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=95.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc------cccccceEEEEEeCc----c
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK------VTKSFELKIWVCVNE----D 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~------~~~~f~~~~wv~~~~----~ 230 (1141)
..+-+|+.+..+|.+.+...=.. ...-+.+-|.|.+|.|||..+..|.+... --..|+ +|.+.. .
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~--~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~---yveINgm~l~~ 470 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD--QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD---YVEINGLRLAS 470 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC--CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc---EEEEcceeecC
Confidence 34678999999999988754212 11234899999999999999999987321 122344 222211 1
Q ss_pred hhH---------------------HHHHHh-----cCcceeeeecCC---CCCChHHHHHHHHhccC-CCCCcEEEEEcC
Q 001145 231 FNS---------------------QLRRLL-----RGRRYLLVLDDV---WNEDHEEWDKLRVSLSD-GAEGSRVIVTTR 280 (1141)
Q Consensus 231 ~~~---------------------~l~~~l-----~~k~~LlvlDdv---w~~~~~~~~~l~~~l~~-~~~gs~ilvTtr 280 (1141)
+.. .+.... +.+.+++++|++ |... .+.+...|.+ ..++||++|-+-
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~---QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS---QDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc---HHHHHHHhcCCcCCCCceEEEEe
Confidence 111 233333 245688888887 3221 2334444443 347888877543
Q ss_pred ch-----------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCC-CCcCcchhhHHHHhhcCCchhHHHHHhh
Q 001145 281 SA-----------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGE-EYLNFLPVGKEIVKKCGGIPLAAKALGS 345 (1141)
Q Consensus 281 ~~-----------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~~~~ 345 (1141)
.. .++..++ -..+..++-++++-.+....+.-+-.. .....+-++++|+.--|-.-.|+.+.-+
T Consensus 548 aNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred cccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 21 1111111 124667777777777766665433211 2222333455555555555555554443
No 389
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.27 E-value=0.32 Score=52.63 Aligned_cols=38 Identities=29% Similarity=0.270 Sum_probs=29.3
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN 232 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 232 (1141)
.++|.|..|+|||+|++++.+.. +-+.++++-+.+..+
T Consensus 159 r~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~ 196 (369)
T cd01134 159 TAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGN 196 (369)
T ss_pred EEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChH
Confidence 78999999999999999999853 234677777765433
No 390
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.26 E-value=0.41 Score=50.47 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999999753
No 391
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.25 E-value=0.085 Score=57.04 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|.|-||+||||++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 4788889999999999988765
No 392
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.24 E-value=0.38 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3899999999999999999975
No 393
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.23 E-value=0.19 Score=51.20 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|+|+.|+|||||.+.+.-
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999964
No 394
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.23 E-value=0.34 Score=56.90 Aligned_cols=113 Identities=20% Similarity=0.188 Sum_probs=69.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc-ccccccceEEEEEeCcchhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE-KVTKSFELKIWVCVNEDFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~l~~~l 239 (1141)
..++|....+.++.+.+..-.. ...-|.|.|..|+||+++|+.+++.- +....| +-+.+..-....+...+
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~-----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~e~lleseL 283 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR-----SDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIAESLLEAEL 283 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC-----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCChhHHHHHh
Confidence 3589999888888887764311 22468899999999999999998632 222223 22222211122222222
Q ss_pred c---------------------CcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 240 R---------------------GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 240 ~---------------------~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
- ...--|+||++.+-.......+...+..+. ...|||.||..
T Consensus 284 FG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred cCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 1 122358999997666666777877775432 12378887754
No 395
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.22 E-value=0.072 Score=50.77 Aligned_cols=22 Identities=50% Similarity=0.620 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.||-|.|.+|.||||||+++..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 396
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.22 E-value=0.37 Score=50.89 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 397
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.15 Score=55.46 Aligned_cols=41 Identities=32% Similarity=0.306 Sum_probs=31.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS 233 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 233 (1141)
.+|.|-|.+|||||||.-+++.+ ....- .+.+|+-.+....
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Q 134 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQ 134 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHH
Confidence 58999999999999999999884 33333 6888887766543
No 398
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.20 E-value=0.12 Score=49.57 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc
Q 001145 169 DKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 169 ~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
.++++.+.+.+ ++++++|..|||||||+..+..+.
T Consensus 25 g~~~l~~~l~~----------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG----------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT----------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC----------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 46677777754 389999999999999999999853
No 399
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.18 E-value=0.24 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 400
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.17 E-value=0.42 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|..|.|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 401
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.17 E-value=0.39 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 402
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.17 E-value=0.6 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-.|++|.|..|.||||+.+.++.
T Consensus 28 Gei~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 28 GEITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred ceEEEEEcCCCCCchhHHHHHHH
Confidence 35999999999999999999986
No 403
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.15 E-value=0.15 Score=52.24 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 169 DKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 169 ~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+..++++.+.... .+..+|+|.|+||+|||||+.++...
T Consensus 14 ~~~~ll~~l~~~~-----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT-----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT-----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 3455666665541 24579999999999999999888763
No 404
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.13 E-value=0.46 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 48999999999999999999753
No 405
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.12 E-value=1.1 Score=47.76 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=55.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccc-c--ccceEEEEEeC--cch------------------------hHHHHHH
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVT-K--SFELKIWVCVN--EDF------------------------NSQLRRL 238 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~--~f~~~~wv~~~--~~~------------------------~~~l~~~ 238 (1141)
....++|+|+.|.|||||.+.+....... + .|+..-...+. ... ...+...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~ 189 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMML 189 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHH
Confidence 35689999999999999999998742211 0 11111111110 000 0012222
Q ss_pred h-cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHh
Q 001145 239 L-RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATI 287 (1141)
Q Consensus 239 l-~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~ 287 (1141)
+ ...+-++++|.+- ..+.+..+...+. .|..+|+||-...+...
T Consensus 190 i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 190 IRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 2 2568899999983 3445555555543 47789999987666443
No 406
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.7 Score=54.03 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=57.0
Q ss_pred cCccccchHHHHH---HHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc-----eEEEEEeCc
Q 001145 160 ESEVVGREEDKEA---MIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-----LKIWVCVNE 229 (1141)
Q Consensus 160 ~~~~vgr~~~~~~---l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~ 229 (1141)
-.++-|.++.+++ +++.|.++.. .-++.-++=|.++|++|.|||.||+++.....+-..+- .-++|.|..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGA 228 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGA 228 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCc
Confidence 3567788765554 5566665421 01223467789999999999999999998655432111 123333433
Q ss_pred chh-HHHHHHhcCcceeeeecCC
Q 001145 230 DFN-SQLRRLLRGRRYLLVLDDV 251 (1141)
Q Consensus 230 ~~~-~~l~~~l~~k~~LlvlDdv 251 (1141)
... ....+..+.-++.+++|.+
T Consensus 229 sRVRdLF~qAkk~aP~IIFIDEi 251 (596)
T COG0465 229 SRVRDLFEQAKKNAPCIIFIDEI 251 (596)
T ss_pred HHHHHHHHHhhccCCCeEEEehh
Confidence 332 2344555666899999987
No 407
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.12 E-value=0.9 Score=53.61 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=67.2
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh--
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL-- 239 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l-- 239 (1141)
.++|......++.+.+..-. . ....+.|.|..|+||+++|+.+...... .....+-+.+..-....+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a--~---~~~~vli~Ge~GtGK~~~A~~ih~~~~~--~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS--R---SDITVLINGESGTGKELVARALHRHSPR--ANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh--C---cCCeEEEECCCCCCHHHHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHhcC
Confidence 47787777777776665431 1 2236789999999999999999863221 1111222332222222222222
Q ss_pred ------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCch
Q 001145 240 ------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRSA 282 (1141)
Q Consensus 240 ------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 282 (1141)
....-.|+||++..-....+..+...+..+. .+.+||+||...
T Consensus 208 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 208 HEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1223458899997666677777877665432 245888888653
No 408
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.46 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999965
No 409
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.11 E-value=0.096 Score=56.46 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=17.6
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|++.|-|||||||+|..+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 477889999999998877654
No 410
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.10 E-value=0.3 Score=51.91 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.5
Q ss_pred EEEEecCcchHHHHHHHHHc
Q 001145 192 IPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~ 211 (1141)
|.++|.+|+||||+|+++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 411
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.10 E-value=0.29 Score=50.40 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=53.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcCc---cc-------ccccc--eEEEEE--eCcc-------hhH---HHHHHhc--Ccc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDE---KV-------TKSFE--LKIWVC--VNED-------FNS---QLRRLLR--GRR 243 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~---~~-------~~~f~--~~~wv~--~~~~-------~~~---~l~~~l~--~k~ 243 (1141)
++++|.|+.|.||||+.+.+.-.. .. +..+. ..++.. +.++ |.. .+...+. .++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999984210 00 00111 012211 1111 111 3444553 578
Q ss_pred eeeeecCCCC----CChHH-HHHHHHhccCCCCCcEEEEEcCchHHHHhh
Q 001145 244 YLLVLDDVWN----EDHEE-WDKLRVSLSDGAEGSRVIVTTRSAKVATIV 288 (1141)
Q Consensus 244 ~LlvlDdvw~----~~~~~-~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~ 288 (1141)
-++++|..-. .+... ...+...+... .++.+|++|...++....
T Consensus 111 ~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~ 159 (216)
T cd03284 111 SLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELE 159 (216)
T ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHh
Confidence 8999999721 11111 12233344322 367789999887765543
No 412
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.47 Score=54.11 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=70.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceE-------EEEEeCcchhH-HHHHHhcCcceeeeecCCCC-----CC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELK-------IWVCVNEDFNS-QLRRLLRGRRYLLVLDDVWN-----ED 255 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~-------~wv~~~~~~~~-~l~~~l~~k~~LlvlDdvw~-----~~ 255 (1141)
+.-|.++|++|.|||-||++|+|.. .-.|-.+ .||--|+..-. .+++.-..-+++|.+|.+.. .+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~ 622 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD 622 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence 4568899999999999999999943 3344211 12222221111 22333356689999999832 01
Q ss_pred ------hHHHHHHHHhccC--CCCCcEEEEEcCchH-HHHhh-C---CCCceeCCCCCHHHHHHHHhhccc
Q 001145 256 ------HEEWDKLRVSLSD--GAEGSRVIVTTRSAK-VATIV-G---TIPPYYLKGLSHDDCWTLFKQRAF 313 (1141)
Q Consensus 256 ------~~~~~~l~~~l~~--~~~gs~ilvTtr~~~-v~~~~-~---~~~~~~l~~l~~~~~~~lf~~~~~ 313 (1141)
.....++..-+.. ...|.-||-.|-..+ +-..+ . -...+.+..-+.+|-.++++...-
T Consensus 623 ~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 623 EGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 1122333333332 235666666554433 33222 1 233677777888888899888764
No 413
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.05 E-value=0.15 Score=54.58 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=39.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHH
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRL 238 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~ 238 (1141)
.-+++.|.|.+|+|||++|.++.. +.......++||+..++....++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESPEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCHHHHHHHH
Confidence 346999999999999999998877 3444578899999998887655544
No 414
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.04 E-value=0.42 Score=50.38 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|..|.|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999975
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.65 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-.+++++|+.|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999987765
No 416
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.00 E-value=0.061 Score=29.64 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=5.1
Q ss_pred cCceEecCCCccccc
Q 001145 565 SLRYLNMSNTLIERL 579 (1141)
Q Consensus 565 ~L~~L~L~~~~i~~l 579 (1141)
+|+.|+|++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 417
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.99 E-value=0.13 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+.+|+|.|..|+||||+|+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999987754
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.99 E-value=0.068 Score=53.53 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+++|+|+.|+||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998764
No 419
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=92.98 E-value=0.34 Score=47.59 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.0
Q ss_pred EEEEecCcchHHHHHHHHHcC
Q 001145 192 IPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~ 212 (1141)
|+|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 420
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.98 E-value=0.69 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=21.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|.++|+.|+||||.+..++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988875
No 421
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.98 E-value=0.48 Score=54.35 Aligned_cols=34 Identities=44% Similarity=0.720 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHH-HHHHHHcC
Q 001145 170 KEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTT-LAQLAYND 212 (1141)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTt-La~~v~~~ 212 (1141)
.++|+..+.++ .||.|+|-.|.|||| |||.+|.+
T Consensus 361 R~~ll~~ir~n---------~vvvivgETGSGKTTQl~QyL~ed 395 (1042)
T KOG0924|consen 361 RDQLLSVIREN---------QVVVIVGETGSGKTTQLAQYLYED 395 (1042)
T ss_pred HHHHHHHHhhC---------cEEEEEecCCCCchhhhHHHHHhc
Confidence 45555555544 499999999999987 67777764
No 422
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.34 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 423
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.95 E-value=0.63 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.+..
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999976
No 424
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.94 E-value=0.074 Score=48.98 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEecCcchHHHHHHHHHcCc
Q 001145 192 IPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.91 E-value=0.68 Score=46.48 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=53.3
Q ss_pred EEEEEecCcchHHHHHHHHHcCccc-------------ccccceEEEEEeC--c-------chhH---HHHHHhcC--cc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKV-------------TKSFELKIWVCVN--E-------DFNS---QLRRLLRG--RR 243 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~--~-------~~~~---~l~~~l~~--k~ 243 (1141)
++.|.|+.|.||||+.+.+.-.... -..|+.. ..... + .|.. .+...+.. ++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i-l~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI-FTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE-EEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 4679999999999999998732100 0111111 11111 1 1212 34445544 88
Q ss_pred eeeeecCCCCC-ChHHHH----HHHHhccCCCCCcEEEEEcCchHHHHhhC
Q 001145 244 YLLVLDDVWNE-DHEEWD----KLRVSLSDGAEGSRVIVTTRSAKVATIVG 289 (1141)
Q Consensus 244 ~LlvlDdvw~~-~~~~~~----~l~~~l~~~~~gs~ilvTtr~~~v~~~~~ 289 (1141)
-++++|..-.. +...-. .+...+.. ..++.+|++|...++...+.
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 99999997432 121111 22222322 23678999999887776543
No 426
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.87 E-value=0.12 Score=55.90 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|.|-|||||||++..+..
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~ 24 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSA 24 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5888889999999999887765
No 427
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=92.87 E-value=1.2 Score=49.61 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 3 ~~a~~la~~I~~~~----~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 3 PYAKALAEIIKNPD----SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHHHhccC----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34566777776541 135679999999999999999998763
No 428
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.87 E-value=0.46 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999763
No 429
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.86 E-value=0.096 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|-+.|.+|+||||+|+++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 577899999999999999876
No 430
>PRK08149 ATP synthase SpaL; Validated
Probab=92.85 E-value=0.2 Score=56.47 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|+|..|+|||||++.++..
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcC
Confidence 37899999999999999999864
No 431
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.27 Score=57.51 Aligned_cols=86 Identities=23% Similarity=0.218 Sum_probs=55.6
Q ss_pred CccccchHHHHHHHHHHHhCCC-----CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 161 SEVVGREEDKEAMIDLLASNGA-----SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~-----~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
+++=|.++-+.+|.+-+.-+-. +.+-.+.+=|.++|++|.|||-+|++|+.... ..|++|...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGPELLNM 744 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGPELLNM 744 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCHHHHHH
Confidence 4566888888888876653210 11112345688999999999999999997322 234555421
Q ss_pred --------hhHHHHHHhcCcceeeeecCCCC
Q 001145 231 --------FNSQLRRLLRGRRYLLVLDDVWN 253 (1141)
Q Consensus 231 --------~~~~l~~~l~~k~~LlvlDdvw~ 253 (1141)
......++-..++|.|.+|.+.+
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 11233444467899999999843
No 432
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.84 E-value=0.059 Score=55.65 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 433
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.84 E-value=0.43 Score=49.18 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 434
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.83 E-value=0.36 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999764
No 435
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.83 E-value=0.061 Score=54.12 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 436
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.82 E-value=0.062 Score=54.87 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 437
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.82 E-value=0.19 Score=56.13 Aligned_cols=42 Identities=31% Similarity=0.211 Sum_probs=30.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN 232 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 232 (1141)
-.++.|.|.+|+|||||+.+++.. ....-..++|++..+...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~~ 123 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESPE 123 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCHH
Confidence 359999999999999999998763 222224577887765544
No 438
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.82 E-value=0.063 Score=53.37 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 439
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.78 E-value=0.38 Score=49.70 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 440
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.75 E-value=0.4 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 441
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.084 Score=53.03 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=50.5
Q ss_pred ccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh---
Q 001145 162 EVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN--- 232 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--- 232 (1141)
++-|-.+.++++.+...-.-- .-+-..++-|.++|++|.|||-+|++|+| +....|-.++--..-+.+-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvigselvqkyvgeg 255 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeehhHHHHHHHhhhh
Confidence 345666777777665432200 00123467788999999999999999999 4444443222111111111
Q ss_pred -H---HHHHHhc-CcceeeeecCC
Q 001145 233 -S---QLRRLLR-GRRYLLVLDDV 251 (1141)
Q Consensus 233 -~---~l~~~l~-~k~~LlvlDdv 251 (1141)
. .+.+..+ .|-++|.+|.+
T Consensus 256 armvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 256 ARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred HHHHHHHHHHhcccceEEEEeecc
Confidence 1 2333333 45688999987
No 442
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=92.72 E-value=0.11 Score=56.45 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|+|-||+||||+|..+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3788899999999999988875
No 443
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.71 E-value=0.075 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.68 E-value=0.11 Score=50.57 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4569999999999999999999863
No 445
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.67 E-value=0.19 Score=57.02 Aligned_cols=51 Identities=27% Similarity=0.321 Sum_probs=34.6
Q ss_pred CccccchHHHHHHHHHHHhC------CCC---CCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 161 SEVVGREEDKEAMIDLLASN------GAS---GFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~------~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|.+..++.+...+... ... ........|.++|++|+|||++|+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999888875544211 000 0011235688999999999999999986
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.64 E-value=0.083 Score=50.18 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.5
Q ss_pred EEEEEecCcchHHHHHHHHH
Q 001145 191 VIPIVGLGGIGKTTLAQLAY 210 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~ 210 (1141)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 447
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.63 E-value=0.48 Score=55.22 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=41.7
Q ss_pred CceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-------HHHHHhcCcceeeeecCCCCC--ChH
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS-------QLRRLLRGRRYLLVLDDVWNE--DHE 257 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-------~l~~~l~~k~~LlvlDdvw~~--~~~ 257 (1141)
....+|.++|.+|.||||+|+.++... -|+.++.+.-. ...+.|+..+- +|+|+.... ...
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~---------g~~~vn~D~lg~~~~~~~~a~~~L~~G~s-VVIDaTn~~~~~R~ 436 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPA---------GYKHVNADTLGSTQNCLTACERALDQGKR-CAIDNTNPDAASRA 436 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHc---------CCeEECcHHHHHHHHHHHHHHHHHhCCCc-EEEECCCCCHHHHH
Confidence 357899999999999999999988631 14444544322 33445544443 577988532 134
Q ss_pred HHHHHH
Q 001145 258 EWDKLR 263 (1141)
Q Consensus 258 ~~~~l~ 263 (1141)
.|..+.
T Consensus 437 ~~i~lA 442 (526)
T TIGR01663 437 KFLQCA 442 (526)
T ss_pred HHHHHH
Confidence 444443
No 448
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.60 E-value=0.16 Score=56.41 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=36.8
Q ss_pred CccccchHHHHHHHHHHHhCC------CC-CCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 161 SEVVGREEDKEAMIDLLASNG------AS-GFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~------~~-~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|.++.++.+.-.+.... .+ .....++.|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468899888888866655320 00 01113467899999999999999999873
No 449
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.60 E-value=0.56 Score=52.30 Aligned_cols=88 Identities=22% Similarity=0.240 Sum_probs=53.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEE-------------------eC---cchhHHHHHHhcCcceeee
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVC-------------------VN---EDFNSQLRRLLRGRRYLLV 247 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-------------------~~---~~~~~~l~~~l~~k~~Llv 247 (1141)
..|.|.|+.|.||||+++.+... +......+++.- +. .++...++..++..+=.|+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 48999999999999999987752 111112222211 11 2355578888888889999
Q ss_pred ecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHH
Q 001145 248 LDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKV 284 (1141)
Q Consensus 248 lDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v 284 (1141)
+|.+ .+.+.+....... ..|-.++.|.-...+
T Consensus 201 vgEi--rd~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 201 IGEM--RDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred EeCC--CCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 9999 4555554433322 234445555554333
No 450
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.59 E-value=0.092 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..+|+|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 359999999999999999999873
No 451
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.58 E-value=0.54 Score=49.25 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||.+.+..-
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999753
No 452
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=92.57 E-value=0.84 Score=42.40 Aligned_cols=87 Identities=18% Similarity=0.382 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHH--HHHHHHcCcccccccceEEEEEeCcchhH-HHHHHh----c
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTT--LAQLAYNDEKVTKSFELKIWVCVNEDFNS-QLRRLL----R 240 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTt--La~~v~~~~~~~~~f~~~~wv~~~~~~~~-~l~~~l----~ 240 (1141)
+++.-++++|.+--. .++-++|+|-||+-||||- +|..||.+. -|.-+|...-. .++.-| .
T Consensus 36 eeLGlLVDFmaEl~K---~~Gh~lIGiRGmPRVGKTEsivAasVcAnK---------rW~f~SSTlikQTvRs~L~~dE~ 103 (192)
T PF11868_consen 36 EELGLLVDFMAELFK---EEGHKLIGIRGMPRVGKTESIVAASVCANK---------RWLFLSSTLIKQTVRSQLIEDEY 103 (192)
T ss_pred hHhccHHHHHHHHHH---hcCceEEeecCCCccCchhHHHHHhhhcCc---------eEEEeeHHHHHHHHHHHhhhccc
Confidence 445556665543211 1256799999999999996 455566543 38888765532 233333 2
Q ss_pred CcceeeeecCCCC---CChHHHHHHHHhc
Q 001145 241 GRRYLLVLDDVWN---EDHEEWDKLRVSL 266 (1141)
Q Consensus 241 ~k~~LlvlDdvw~---~~~~~~~~l~~~l 266 (1141)
+..-+.++|++-+ .+...|..+....
T Consensus 104 ~~~~ifIIDGivSt~r~~e~H~~Lvreim 132 (192)
T PF11868_consen 104 NENNIFIIDGIVSTRRSNERHWQLVREIM 132 (192)
T ss_pred CcCcEEEEeeeeeeccCCHHHHHHHHHHH
Confidence 3567888999732 2345666665544
No 453
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.55 E-value=0.55 Score=48.29 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|..|.|||||++.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999965
No 454
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=92.55 E-value=0.33 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.4
Q ss_pred EEEEecCcchHHHHHHHHHcC
Q 001145 192 IPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~ 212 (1141)
|+++|.+|+|||||++.+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999888654
No 455
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.53 E-value=0.28 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|+|..|+|||||++.+.+.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998863
No 456
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.53 E-value=0.076 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999874
No 457
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.53 E-value=0.54 Score=45.71 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHhcCcc-eeeeecCCC---CCChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 236 RRLLRGRR-YLLVLDDVW---NEDHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 236 ~~~l~~k~-~LlvlDdvw---~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
++.+...+ =|+|||.+- +...-+.+.+...+.....+..||+|-|..
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34444444 599999981 111233456666676667788999999985
No 458
>PRK13949 shikimate kinase; Provisional
Probab=92.53 E-value=0.08 Score=52.10 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 459
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.52 E-value=0.45 Score=57.16 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|+|+.|.|||||++.+..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 460
>PRK06217 hypothetical protein; Validated
Probab=92.52 E-value=0.079 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEecCcchHHHHHHHHHcCc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998743
No 461
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.50 E-value=0.3 Score=52.15 Aligned_cols=72 Identities=28% Similarity=0.455 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-HHHHHHh---------
Q 001145 170 KEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-SQLRRLL--------- 239 (1141)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~l~~~l--------- 239 (1141)
...+++.+... + +-|.++|+.|+|||++++....... ...|- ..-+..+..-. ..+++.+
T Consensus 22 ~~~ll~~l~~~-------~-~pvLl~G~~GtGKT~li~~~l~~l~-~~~~~-~~~~~~s~~Tts~~~q~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSN-------G-RPVLLVGPSGTGKTSLIQNFLSSLD-SDKYL-VITINFSAQTTSNQLQKIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHC-------T-EEEEEESSTTSSHHHHHHHHHHCST-TCCEE-EEEEES-TTHHHHHHHHCCCTTECECTT
T ss_pred HHHHHHHHHHc-------C-CcEEEECCCCCchhHHHHhhhccCC-ccccc-eeEeeccCCCCHHHHHHHHhhcEEcCCC
Confidence 34566666655 2 3568999999999999999876322 11221 23334443222 2344333
Q ss_pred ------cCcceeeeecCC
Q 001145 240 ------RGRRYLLVLDDV 251 (1141)
Q Consensus 240 ------~~k~~LlvlDdv 251 (1141)
.+|+.++.+||+
T Consensus 92 ~~~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 92 RVYGPPGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEEESSSEEEEEEETT
T ss_pred CCCCCCCCcEEEEEeccc
Confidence 356889999998
No 462
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.49 E-value=0.19 Score=55.85 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=38.1
Q ss_pred cCccccchHHHHHHHHHHHhC----C---CCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 160 ESEVVGREEDKEAMIDLLASN----G---ASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~----~---~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+..++|.++.++.+..++... . ........+.|.++|++|+|||++|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999988777541 0 0000112467899999999999999999873
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.49 E-value=0.089 Score=52.78 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999999999999987
No 464
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.49 E-value=0.18 Score=52.43 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=34.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL 239 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l 239 (1141)
.-.++.|.|.+|+||||+|.+++... ...-..++|+.....+...+++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~~~~~~~~ 67 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSSERFRQIA 67 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCHHHHHHHH
Confidence 34699999999999999999987632 222335677776665555444443
No 465
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=92.42 E-value=0.43 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999753
No 466
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.42 E-value=0.24 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|+|..|+|||||++.+.+.
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~ 178 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNA 178 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCC
Confidence 38899999999999999999863
No 467
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.39 E-value=0.22 Score=52.69 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=31.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccc----cccceEEEEEeCcchhH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVT----KSFELKIWVCVNEDFNS 233 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~ 233 (1141)
.+.=|+|.+|+|||+|+.+++-+..+. +.=..++|+.-...|..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~ 86 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP 86 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH
Confidence 488999999999999998776433222 22246899988877765
No 468
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.38 E-value=0.12 Score=51.92 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=28.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN 228 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 228 (1141)
+++.|+|+.|+|||||++++.. .....|...++.+-.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 5889999999999999999987 444567655555443
No 469
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.38 E-value=0.51 Score=52.66 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=47.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCc------cccc-------ccceEEEEEeCcchhHHHHHHhcCcceeeeecCCCCC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDE------KVTK-------SFELKIWVCVNEDFNSQLRRLLRGRRYLLVLDDVWNE 254 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~------~~~~-------~f~~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdvw~~ 254 (1141)
.+-+|+|+|++|.|||||.+.+.... .+++ .-...-+..+..+....+.-.--..-+|+.+|+-..-
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaKIaDLVlLlIdgnfGf 147 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAKIADLVLLLIDGNFGF 147 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHHHhhheeEEEeccccCc
Confidence 45688899999999999998876521 1111 1111223333344443333322344578888886554
Q ss_pred ChHHHHHHHHhccCCCCC
Q 001145 255 DHEEWDKLRVSLSDGAEG 272 (1141)
Q Consensus 255 ~~~~~~~l~~~l~~~~~g 272 (1141)
+.+..+-+....+.+-+.
T Consensus 148 EMETmEFLnil~~HGmPr 165 (1077)
T COG5192 148 EMETMEFLNILISHGMPR 165 (1077)
T ss_pred eehHHHHHHHHhhcCCCc
Confidence 555555555444444443
No 470
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.36 E-value=0.27 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|+|..|.|||||++.+...
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 37899999999999999999864
No 471
>PRK09354 recA recombinase A; Provisional
Probab=92.33 E-value=0.21 Score=54.62 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=32.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS 233 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 233 (1141)
.-+++-|+|++|+||||||.+++.. ....-..++|+...+.++.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH
Confidence 3468999999999999999988753 2233356778877766655
No 472
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.33 E-value=0.42 Score=49.27 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=31.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE 229 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 229 (1141)
.-+++.|+|++|+|||++|.++... ....-..++|+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC
Confidence 3469999999999999999988763 223346789998875
No 473
>PRK13947 shikimate kinase; Provisional
Probab=92.32 E-value=0.087 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 474
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.31 E-value=0.25 Score=52.41 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=22.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+..+|.|+|.+|+|||||+..+.+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999887
No 475
>PRK10867 signal recognition particle protein; Provisional
Probab=92.31 E-value=0.47 Score=53.91 Aligned_cols=24 Identities=46% Similarity=0.445 Sum_probs=20.0
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999997766654
No 476
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.30 E-value=0.09 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999863
No 477
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=0.24 Score=58.04 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHhcCcceeeeecCCCCCCh-HHHHHHHHhcc-CCCCCcEEEEEcCchHHHH
Q 001145 234 QLRRLLRGRRYLLVLDDVWNEDH-EEWDKLRVSLS-DGAEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~~~~-~~~~~l~~~l~-~~~~gs~ilvTtr~~~v~~ 286 (1141)
+|.++|-.++..+|||+.-+.-. +.=..+...+. .....+-|+|+-|-..|..
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~ 668 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH 668 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh
Confidence 67888888999999999732110 11011222332 1223677888888766654
No 478
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.28 E-value=3.1 Score=45.01 Aligned_cols=147 Identities=10% Similarity=0.051 Sum_probs=88.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCc--------ccccccceEEEEEe-Ccchh-HHH---HHHh---c---Ccceeeeec
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDE--------KVTKSFELKIWVCV-NEDFN-SQL---RRLL---R---GRRYLLVLD 249 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~-~~l---~~~l---~---~k~~LlvlD 249 (1141)
.++..++|..|+||+++|+.+.+.. ....+=+...++.. ..... ..+ .+.+ . +++-++|+|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~ 97 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIK 97 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEe
Confidence 4577799999999999998886532 11111112333331 11111 122 2222 1 578889999
Q ss_pred CCCCCChHHHHHHHHhccCCCCCcEEEEEcC-chHHHHh-hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhH
Q 001145 250 DVWNEDHEEWDKLRVSLSDGAEGSRVIVTTR-SAKVATI-VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGK 327 (1141)
Q Consensus 250 dvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr-~~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 327 (1141)
++..........+...+.....++.+|++|. ...+... ......+++.++++++..+.+.... ...+.+.
T Consensus 98 ~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~--------~~~~~a~ 169 (299)
T PRK07132 98 NIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN--------KEKEYNW 169 (299)
T ss_pred cccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC--------CChhHHH
Confidence 9866666677788888887777777776554 4444432 3345589999999999887776531 1113355
Q ss_pred HHHhhcCCchhHHHHH
Q 001145 328 EIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 328 ~i~~~~~g~Plai~~~ 343 (1141)
.++...+|.=-|+..+
T Consensus 170 ~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 170 FYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 5666666633455543
No 479
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.27 E-value=0.23 Score=56.07 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|+|..|+|||||++.+...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998763
No 480
>PRK05439 pantothenate kinase; Provisional
Probab=92.27 E-value=0.19 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=22.0
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+.+|+|.|.+|+||||+|+.+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998875
No 481
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.26 E-value=0.11 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+..+|+|+|++|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 482
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.26 E-value=0.6 Score=46.10 Aligned_cols=93 Identities=20% Similarity=0.162 Sum_probs=54.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcC-----ccc-----------------ccccceEEEEEeCcch-------hH-------
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND-----EKV-----------------TKSFELKIWVCVNEDF-------NS------- 233 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~-----~~~-----------------~~~f~~~~wv~~~~~~-------~~------- 233 (1141)
..|-|+|..|-||||.|..+.-. .++ -.....+-|......+ ..
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 48899999999999999655321 000 0011123333322221 11
Q ss_pred ---HHHHHhcC-cceeeeecCCC---CCChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 234 ---QLRRLLRG-RRYLLVLDDVW---NEDHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 234 ---~l~~~l~~-k~~LlvlDdvw---~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
..++.+.. +-=|+|||.+- +....+.+.+...+.....+..||+|-|..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 23444444 44599999981 112234566777777767788999999985
No 483
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.25 E-value=0.55 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...|+|+|.+|+|||||...+.+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998875
No 484
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.25 E-value=0.17 Score=52.37 Aligned_cols=151 Identities=13% Similarity=0.160 Sum_probs=75.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCc--------ccc-----cccceEEEEEe--Ccc-------hhH---HHHHHh--cC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDE--------KVT-----KSFELKIWVCV--NED-------FNS---QLRRLL--RG 241 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~--------~~~-----~~f~~~~wv~~--~~~-------~~~---~l~~~l--~~ 241 (1141)
.+++.|.|+.|.||||+.+.+.-.. -.. ..|+. +...+ .+. +.. .+...+ -.
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~-il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~ 108 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDC-ILARVGASDSQLKGVSTFMAEMLETAAILKSAT 108 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccce-eEeeeccccchhcCcChHHHHHHHHHHHHHhCC
Confidence 4699999999999999988764210 000 01111 11111 111 111 333444 35
Q ss_pred cceeeeecCCCC---C-Ch--HHHHHHHHhccCCCCCcEEEEEcCchHHHHhhCCCCc---eeCCCCCHH--HHHHHHhh
Q 001145 242 RRYLLVLDDVWN---E-DH--EEWDKLRVSLSDGAEGSRVIVTTRSAKVATIVGTIPP---YYLKGLSHD--DCWTLFKQ 310 (1141)
Q Consensus 242 k~~LlvlDdvw~---~-~~--~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~---~~l~~l~~~--~~~~lf~~ 310 (1141)
++-|+++|..-. . |. ..|..+ ..+.. ..|+.+|+||-..++...+..... .++.....+ +.. .|.-
T Consensus 109 ~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~-~~~Y 185 (222)
T cd03285 109 ENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL-TMLY 185 (222)
T ss_pred CCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE-eEEE
Confidence 788999999832 1 11 122222 33332 346789999987777665433221 122111111 111 1111
Q ss_pred cccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhc
Q 001145 311 RAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMR 348 (1141)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 348 (1141)
+. ..+. .....|-++++++ |+|-.+.-.|..+.
T Consensus 186 ~l-~~G~---~~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 186 KV-EKGA---CDQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred EE-eeCC---CCCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 11 1111 1134566777766 89988887777654
No 485
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.24 E-value=0.11 Score=49.13 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
++|.|+|..|+|||||++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999883
No 486
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.23 E-value=0.091 Score=49.13 Aligned_cols=22 Identities=50% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+|.|-|++|.||||+|+.+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999874
No 487
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.22 E-value=0.66 Score=47.39 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=53.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc-------------ccccceEEEEEeCc---------chhH---HHHHHh--cCc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV-------------TKSFELKIWVCVNE---------DFNS---QLRRLL--RGR 242 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~---------~~~~---~l~~~l--~~k 242 (1141)
.+++|+|+.|.||||+.+.+...... -..|+ .++..... .+.. .+..++ ...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~d-qi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVD-RIFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcC-EEEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 58999999999999999999732100 00111 11222111 1111 223333 357
Q ss_pred ceeeeecCCCCC-Ch---HHH-HHHHHhccCCCCCcEEEEEcCchHHHHhhC
Q 001145 243 RYLLVLDDVWNE-DH---EEW-DKLRVSLSDGAEGSRVIVTTRSAKVATIVG 289 (1141)
Q Consensus 243 ~~LlvlDdvw~~-~~---~~~-~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~ 289 (1141)
+-++++|..-.. +. ... ..+...+. ..+..+|++|.+.++...+.
T Consensus 109 ~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 109 RSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLPE 158 (202)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHhh
Confidence 899999997431 11 111 11222232 23677899998888777654
No 488
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.22 E-value=1.2 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.+..-
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 38999999999999999999764
No 489
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.20 E-value=0.73 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|..|.|||||++.++.-
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 38999999999999999999753
No 490
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.20 E-value=0.11 Score=49.20 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEecCcchHHHHHHHHHcC
Q 001145 192 IPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~~ 212 (1141)
|+|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999873
No 491
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=92.17 E-value=0.17 Score=55.20 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=19.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|+|.|-||+||||.+..+..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~ 26 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLA 26 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHH
Confidence 357888899999999998876653
No 492
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.16 E-value=0.43 Score=53.80 Aligned_cols=56 Identities=27% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHhcCcceeeeecCCCCC-ChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhhCC
Q 001145 234 QLRRLLRGRRYLLVLDDVWNE-DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIVGT 290 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~~-~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~~ 290 (1141)
.+.+.|-.++-|+.||+--.. |.+.-..+-..|.....+ .++|++|+++....+++
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhh
Confidence 466667788999999996332 333434455566544433 68999999877665443
No 493
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.16 E-value=0.28 Score=56.32 Aligned_cols=34 Identities=35% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++++++..-+. =..+.|+|++|+|||||++.+.+
T Consensus 405 RvIDll~PIGk------GQR~LIvgpp~aGKTtLL~~IAn 438 (672)
T PRK12678 405 RVIDLIMPIGK------GQRGLIVSPPKAGKTTILQNIAN 438 (672)
T ss_pred eeeeeeccccc------CCEeEEeCCCCCCHHHHHHHHHH
Confidence 45666654421 13678999999999999999987
No 494
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.15 E-value=0.094 Score=52.23 Aligned_cols=21 Identities=48% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 495
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.11 E-value=0.27 Score=56.09 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=26.7
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccc--eEEEEEeCc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFE--LKIWVCVNE 229 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~ 229 (1141)
.++|.|..|+|||||+.++.+.....+.+. .++++-+.+
T Consensus 143 R~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGE 183 (458)
T TIGR01041 143 KLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGI 183 (458)
T ss_pred EEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccc
Confidence 689999999999999999987543321111 445555543
No 496
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.10 E-value=0.49 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++++|+.|+||||++.++...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 59999999999999999999863
No 497
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=92.10 E-value=0.7 Score=54.14 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=67.2
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-ccccceEEEEEeCcchhHHHHHHh-
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-TKSFELKIWVCVNEDFNSQLRRLL- 239 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~l~~~l- 239 (1141)
.++|....+.++.+.+..-. . .. .-|.|.|..|+||+++|+.+...... ...| +.+.+..-....+...+
T Consensus 140 ~lig~s~~~~~l~~~i~~~a--~--~~-~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~---v~v~c~~~~~~~~~~~lf 211 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA--P--SD-ITVLLLGESGTGKEVLARALHQLSDRKDKRF---VAINCAAIPENLLESELF 211 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh--C--CC-CCEEEECCCCcCHHHHHHHHHHhCCcCCCCe---EEEECCCCChHHHHHHhc
Confidence 47888877777777665431 1 12 24569999999999999999863221 1122 23333322222233222
Q ss_pred -------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCch
Q 001145 240 -------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRSA 282 (1141)
Q Consensus 240 -------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~~ 282 (1141)
+...-.++||++..-.......+...+..+. ...+||.||...
T Consensus 212 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 212 GYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred CCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 1223468999997666666777777765432 145888888653
No 498
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.09 E-value=0.4 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999975
No 499
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.09 E-value=0.46 Score=53.64 Aligned_cols=24 Identities=46% Similarity=0.407 Sum_probs=21.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+.+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988764
No 500
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.07 E-value=0.61 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|+.|.|||||.+.+..-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999763
Done!