Query 001145
Match_columns 1141
No_of_seqs 628 out of 4581
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.8E-46 2E-50 464.0 25.1 575 491-1124 100-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.6E-45 9E-50 458.1 27.8 600 491-1141 50-741 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 4.7E-45 1.6E-49 434.4 19.4 289 164-479 131-473 (549)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-39 7.8E-44 401.9 35.8 575 489-1116 23-636 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-39 1.1E-43 395.2 32.1 518 503-1101 22-557 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.4E-38 4.9E-43 389.3 34.7 518 489-1100 31-558 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-37 7.4E-42 384.2 40.9 541 503-1100 15-595 (680)
8 3t6q_A CD180 antigen; protein- 100.0 2.6E-36 9E-41 369.2 33.9 250 849-1100 277-534 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-36 1.3E-40 367.7 32.5 519 489-1082 30-562 (606)
10 1vt4_I APAF-1 related killer D 100.0 2.5E-36 8.6E-41 357.9 17.9 259 163-471 130-437 (1221)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3.9E-35 1.3E-39 354.4 28.2 468 504-1100 17-508 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 1.7E-34 5.8E-39 350.9 33.8 496 489-1082 26-535 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 5.6E-35 1.9E-39 355.2 29.3 483 504-1100 19-529 (570)
14 4eco_A Uncharacterized protein 100.0 8E-35 2.7E-39 354.5 19.8 380 573-1102 192-632 (636)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-32 4.8E-37 346.9 39.0 194 893-1100 358-558 (844)
16 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-34 8.2E-39 383.8 21.5 285 159-477 122-452 (1249)
17 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-32 1E-36 344.0 38.3 512 489-1079 22-561 (844)
18 4ecn_A Leucine-rich repeat pro 100.0 1.4E-33 4.8E-38 347.3 24.6 278 721-1085 543-847 (876)
19 2z81_A CD282 antigen, TOLL-lik 100.0 7E-33 2.4E-37 334.7 27.1 465 489-1082 24-514 (549)
20 4eco_A Uncharacterized protein 100.0 3.2E-33 1.1E-37 340.5 22.4 360 550-1055 192-601 (636)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-32 1.2E-36 325.9 28.4 446 518-1100 3-479 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-31 4.3E-36 330.9 33.4 515 503-1100 42-578 (635)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-31 5.4E-36 320.1 30.6 454 495-1080 4-483 (520)
24 4ecn_A Leucine-rich repeat pro 100.0 3.1E-32 1.1E-36 335.3 24.2 384 551-1075 435-861 (876)
25 1z6t_A APAF-1, apoptotic prote 100.0 5.4E-31 1.8E-35 319.7 21.2 280 160-474 123-449 (591)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4E-30 1.4E-34 310.3 27.0 141 494-644 34-178 (562)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-29 5.6E-34 304.9 29.6 265 828-1100 219-508 (562)
28 3v47_A TOLL-like receptor 5B a 100.0 1.7E-28 5.8E-33 288.7 26.4 138 945-1082 275-412 (455)
29 1o6v_A Internalin A; bacterial 100.0 9.2E-28 3.1E-32 282.1 30.6 173 893-1079 217-389 (466)
30 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-27 7.5E-32 292.9 34.1 519 488-1079 49-581 (635)
31 1o6v_A Internalin A; bacterial 100.0 1.5E-27 5.3E-32 280.2 28.9 346 513-1055 44-389 (466)
32 1jl5_A Outer protein YOPM; leu 100.0 9.9E-28 3.4E-32 278.4 24.1 85 540-629 10-108 (454)
33 3v47_A TOLL-like receptor 5B a 100.0 3.4E-27 1.2E-31 277.5 24.5 384 543-1100 12-406 (455)
34 2id5_A Lingo-1, leucine rich r 99.9 3.2E-26 1.1E-30 270.6 29.2 188 893-1080 148-335 (477)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-26 5.7E-31 268.4 23.3 359 509-1085 36-394 (457)
36 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-26 1.3E-30 265.4 25.7 338 536-1099 37-384 (457)
37 1jl5_A Outer protein YOPM; leu 99.9 2.5E-26 8.7E-31 266.5 23.0 147 557-785 5-164 (454)
38 4fmz_A Internalin; leucine ric 99.9 1.1E-25 3.6E-30 254.3 26.5 81 537-621 40-120 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 3.7E-25 1.3E-29 261.5 29.3 165 892-1056 171-335 (477)
40 4fmz_A Internalin; leucine ric 99.9 8.1E-25 2.8E-29 247.0 25.2 60 559-621 39-98 (347)
41 3o6n_A APL1; leucine-rich repe 99.9 1.4E-23 4.8E-28 240.7 25.6 82 540-621 44-127 (390)
42 3oja_B Anopheles plasmodium-re 99.9 2.6E-23 8.9E-28 251.8 25.5 82 540-621 50-133 (597)
43 2ft3_A Biglycan; proteoglycan, 99.9 5.1E-23 1.7E-27 230.1 25.6 78 542-621 34-112 (332)
44 3o6n_A APL1; leucine-rich repe 99.9 5.7E-23 1.9E-27 235.6 26.0 146 945-1100 205-350 (390)
45 1xku_A Decorin; proteoglycan, 99.9 1.1E-22 3.6E-27 227.5 27.5 156 940-1099 166-329 (330)
46 3oja_B Anopheles plasmodium-re 99.9 5.3E-23 1.8E-27 249.1 23.8 125 513-640 49-176 (597)
47 1ogq_A PGIP-2, polygalacturona 99.9 6.5E-24 2.2E-28 234.4 12.4 249 830-1103 50-305 (313)
48 4fcg_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 225.8 18.1 203 893-1099 100-311 (328)
49 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.8E-26 219.2 24.8 98 516-621 34-133 (332)
50 1z7x_W Ribonuclease inhibitor; 99.9 5.6E-25 1.9E-29 259.2 -4.9 184 897-1080 199-413 (461)
51 1ogq_A PGIP-2, polygalacturona 99.9 7.6E-23 2.6E-27 225.8 12.2 188 892-1082 120-308 (313)
52 4fcg_A Uncharacterized protein 99.9 9.4E-22 3.2E-26 218.3 17.1 204 895-1103 79-291 (328)
53 1z7x_W Ribonuclease inhibitor; 99.9 4.8E-24 1.6E-28 251.3 -4.1 188 891-1078 221-440 (461)
54 1xku_A Decorin; proteoglycan, 99.9 2E-20 6.7E-25 209.0 24.8 202 893-1101 96-305 (330)
55 3zyi_A Leucine-rich repeat-con 99.9 1.8E-20 6.3E-25 219.0 22.9 233 843-1100 66-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 2.4E-20 8.1E-25 217.2 23.0 233 843-1100 55-290 (440)
57 2z66_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 208.0 18.4 209 891-1100 46-259 (306)
58 3ogk_B Coronatine-insensitive 99.8 1.9E-22 6.6E-27 245.8 3.4 207 893-1099 314-548 (592)
59 2z80_A TOLL-like receptor 2, v 99.8 2.1E-20 7.1E-25 210.9 17.8 81 539-621 29-110 (353)
60 2z66_A Variable lymphocyte rec 99.8 6.4E-20 2.2E-24 202.5 20.8 186 894-1080 75-263 (306)
61 1ozn_A Reticulon 4 receptor; N 99.8 3.9E-20 1.3E-24 201.8 18.3 205 896-1100 31-236 (285)
62 2z80_A TOLL-like receptor 2, v 99.8 3.6E-20 1.2E-24 209.0 18.5 205 895-1100 98-312 (353)
63 3zyi_A Leucine-rich repeat-con 99.8 2.5E-19 8.4E-24 209.4 24.3 183 893-1077 119-302 (452)
64 3zyj_A Leucine-rich repeat-con 99.8 2.7E-19 9.3E-24 208.2 24.3 183 893-1077 108-291 (440)
65 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-19 3.9E-24 198.1 17.8 190 891-1080 50-240 (285)
66 3ogk_B Coronatine-insensitive 99.8 1.4E-21 4.7E-26 238.3 2.6 83 539-621 110-202 (592)
67 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-18 3.8E-23 208.1 25.7 71 542-621 41-111 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-18 5.4E-23 206.8 24.2 98 515-628 40-137 (622)
69 2p1m_B Transport inhibitor res 99.8 1.3E-21 4.3E-26 238.8 -3.4 83 539-621 103-194 (594)
70 1wwl_A Monocyte differentiatio 99.8 3.6E-20 1.2E-24 204.6 6.7 200 895-1100 93-307 (312)
71 2o6q_A Variable lymphocyte rec 99.8 2.5E-18 8.7E-23 185.4 21.1 200 898-1100 17-216 (270)
72 2z62_A TOLL-like receptor 4, v 99.8 2E-18 7E-23 187.2 17.7 203 897-1100 28-235 (276)
73 3o53_A Protein LRIM1, AGAP0063 99.8 1E-19 3.5E-24 201.4 6.2 152 920-1075 119-272 (317)
74 1p9a_G Platelet glycoprotein I 99.8 7.2E-18 2.5E-22 183.2 20.3 201 893-1100 6-206 (290)
75 2p1m_B Transport inhibitor res 99.8 6.4E-21 2.2E-25 232.6 -7.3 207 892-1099 309-541 (594)
76 3rfs_A Internalin B, repeat mo 99.8 5.6E-18 1.9E-22 182.8 15.7 189 893-1090 59-247 (272)
77 1wwl_A Monocyte differentiatio 99.8 1.7E-19 5.8E-24 199.2 3.5 180 894-1079 118-310 (312)
78 3oja_A Leucine-rich immune mol 99.8 9.2E-19 3.1E-23 205.2 9.6 170 897-1073 99-270 (487)
79 3oja_A Leucine-rich immune mol 99.7 4.4E-18 1.5E-22 199.4 15.0 198 891-1102 52-250 (487)
80 2z62_A TOLL-like receptor 4, v 99.7 1.4E-17 4.8E-22 180.5 17.6 188 892-1080 47-239 (276)
81 3o53_A Protein LRIM1, AGAP0063 99.7 5.7E-18 1.9E-22 187.4 14.3 238 850-1102 34-275 (317)
82 2o6q_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 174.8 20.3 184 897-1080 37-220 (270)
83 2xwt_C Thyrotropin receptor; s 99.7 2.8E-17 9.7E-22 173.7 16.9 200 897-1102 31-239 (239)
84 3rfs_A Internalin B, repeat mo 99.7 2.6E-17 8.7E-22 177.6 15.1 196 893-1099 37-232 (272)
85 4glp_A Monocyte differentiatio 99.7 3E-17 1E-21 181.0 14.9 199 896-1100 90-305 (310)
86 2xwt_C Thyrotropin receptor; s 99.7 1.2E-16 4.1E-21 168.9 17.8 208 840-1076 20-237 (239)
87 1p9a_G Platelet glycoprotein I 99.7 1.8E-16 6E-21 172.2 19.5 179 897-1079 31-209 (290)
88 3m19_A Variable lymphocyte rec 99.7 2.4E-16 8.3E-21 167.8 19.0 180 898-1080 15-194 (251)
89 3m19_A Variable lymphocyte rec 99.7 2.7E-16 9.4E-21 167.3 18.1 177 921-1100 14-190 (251)
90 1h6u_A Internalin H; cell adhe 99.7 1.8E-16 6.3E-21 174.0 15.4 190 895-1100 39-228 (308)
91 2ca6_A RAN GTPase-activating p 99.7 6E-18 2.1E-22 193.3 0.5 209 892-1100 55-314 (386)
92 2ast_B S-phase kinase-associat 99.7 3.2E-17 1.1E-21 183.8 4.9 202 897-1099 70-282 (336)
93 3qfl_A MLA10; coiled-coil, (CC 99.6 4.6E-17 1.6E-21 145.6 3.7 81 8-88 1-83 (115)
94 4glp_A Monocyte differentiatio 99.6 7.3E-16 2.5E-20 169.9 13.5 180 894-1079 114-308 (310)
95 1h6u_A Internalin H; cell adhe 99.6 1.3E-15 4.6E-20 167.2 15.2 173 893-1079 59-231 (308)
96 2ast_B S-phase kinase-associat 99.6 3.2E-17 1.1E-21 183.8 1.5 208 893-1106 89-309 (336)
97 4ay9_X Follicle-stimulating ho 99.6 8.5E-15 2.9E-19 164.2 20.1 230 842-1099 20-256 (350)
98 2ca6_A RAN GTPase-activating p 99.6 2.4E-17 8.2E-22 188.3 -0.9 259 828-1099 30-340 (386)
99 2o6s_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 151.6 14.7 180 901-1090 11-190 (208)
100 4ay9_X Follicle-stimulating ho 99.6 4E-14 1.4E-18 158.8 21.5 59 729-791 12-71 (350)
101 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 150.1 13.4 173 896-1079 27-199 (208)
102 3goz_A Leucine-rich repeat-con 99.5 3.7E-16 1.3E-20 176.4 -0.2 210 891-1100 44-295 (362)
103 4ezg_A Putative uncharacterize 99.5 1.7E-14 5.9E-19 146.9 12.1 150 944-1100 43-192 (197)
104 3cvr_A Invasion plasmid antige 99.5 6.9E-14 2.4E-18 164.5 17.6 176 897-1100 59-241 (571)
105 1h6t_A Internalin B; cell adhe 99.5 2.1E-14 7.3E-19 156.0 12.3 173 893-1079 42-214 (291)
106 2v9t_B SLIT homolog 2 protein 99.5 9.3E-14 3.2E-18 143.9 15.6 152 924-1078 14-165 (220)
107 1h6t_A Internalin B; cell adhe 99.5 6E-14 2E-18 152.4 14.7 170 917-1100 42-211 (291)
108 2v9t_B SLIT homolog 2 protein 99.5 9E-14 3.1E-18 144.0 15.0 152 900-1054 14-165 (220)
109 4ezg_A Putative uncharacterize 99.5 3.9E-14 1.4E-18 144.2 11.4 151 920-1077 43-193 (197)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4.1E-18 143.0 15.1 153 924-1079 14-167 (220)
111 1m9s_A Internalin B; cell inva 99.5 4.6E-14 1.6E-18 168.3 13.4 174 893-1080 39-212 (605)
112 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 142.5 15.8 155 922-1080 20-174 (229)
113 3e6j_A Variable lymphocyte rec 99.5 2.2E-13 7.7E-18 142.1 15.8 152 899-1054 21-172 (229)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 1.4E-13 4.9E-18 142.5 14.1 153 900-1055 14-167 (220)
115 3goz_A Leucine-rich repeat-con 99.5 8.8E-16 3E-20 173.3 -3.3 211 890-1100 15-264 (362)
116 1m9s_A Internalin B; cell inva 99.5 1.4E-13 4.8E-18 164.1 14.6 171 917-1101 39-209 (605)
117 2xot_A Amphoterin-induced prot 99.5 7.9E-14 2.7E-18 156.9 11.9 176 900-1078 21-202 (361)
118 3cvr_A Invasion plasmid antige 99.5 2.8E-13 9.6E-18 159.4 15.5 166 897-1087 80-252 (571)
119 2xot_A Amphoterin-induced prot 99.5 1.1E-13 3.7E-18 155.8 11.5 158 897-1054 39-202 (361)
120 1xeu_A Internalin C; cellular 99.4 4E-13 1.4E-17 143.3 10.1 170 896-1080 18-187 (263)
121 1dce_A Protein (RAB geranylger 99.4 5.2E-15 1.8E-19 175.4 -5.7 196 894-1096 346-567 (567)
122 1w5s_A Origin recognition comp 99.3 2.2E-12 7.6E-17 148.7 11.7 273 161-450 22-372 (412)
123 2ell_A Acidic leucine-rich nuc 99.3 2.8E-12 9.7E-17 126.7 10.5 131 921-1077 24-159 (168)
124 2qen_A Walker-type ATPase; unk 99.3 1.8E-11 6E-16 137.8 18.5 267 159-470 10-348 (350)
125 1xeu_A Internalin C; cellular 99.3 3.2E-12 1.1E-16 136.4 11.5 151 893-1056 37-187 (263)
126 2ell_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 126.1 10.1 130 969-1101 24-159 (168)
127 2fna_A Conserved hypothetical 99.3 2.3E-11 7.9E-16 137.3 16.4 266 159-469 11-355 (357)
128 1w8a_A SLIT protein; signaling 99.3 1.9E-11 6.4E-16 123.5 13.6 131 948-1081 11-142 (192)
129 1w8a_A SLIT protein; signaling 99.3 1.6E-11 5.6E-16 123.9 13.1 131 924-1057 11-142 (192)
130 4b8c_D Glucose-repressible alc 99.3 7.1E-13 2.4E-17 162.5 3.2 143 937-1083 216-359 (727)
131 2je0_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 123.6 7.0 84 921-1006 17-101 (149)
132 2je0_A Acidic leucine-rich nuc 99.3 1.9E-12 6.5E-17 125.0 5.6 127 944-1072 16-147 (149)
133 1dce_A Protein (RAB geranylger 99.3 3.6E-14 1.2E-18 168.2 -8.8 176 918-1100 346-544 (567)
134 4b8c_D Glucose-repressible alc 99.3 7.1E-13 2.4E-17 162.5 2.1 154 888-1051 215-369 (727)
135 3sb4_A Hypothetical leucine ri 99.2 4.6E-11 1.6E-15 132.5 13.0 102 992-1095 225-327 (329)
136 2wfh_A SLIT homolog 2 protein 99.2 8.9E-11 3E-15 118.4 13.7 127 948-1078 13-139 (193)
137 2wfh_A SLIT homolog 2 protein 99.2 8E-11 2.7E-15 118.7 13.1 127 924-1054 13-139 (193)
138 1a9n_A U2A', U2A'; complex (nu 99.2 3.2E-11 1.1E-15 120.0 9.2 129 511-645 15-150 (176)
139 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5E-15 115.4 13.5 110 970-1079 29-138 (177)
140 2o6r_A Variable lymphocyte rec 99.2 2.1E-10 7.2E-15 114.2 13.9 127 971-1100 9-135 (177)
141 1njg_A DNA polymerase III subu 99.1 3.3E-10 1.1E-14 120.3 14.6 178 161-346 23-230 (250)
142 1a9n_A U2A', U2A'; complex (nu 99.1 4.7E-11 1.6E-15 118.8 6.8 85 942-1029 16-100 (176)
143 3sb4_A Hypothetical leucine ri 99.1 3.7E-10 1.3E-14 125.2 12.4 103 968-1072 225-328 (329)
144 4fdw_A Leucine rich hypothetic 99.1 4.7E-09 1.6E-13 118.6 20.4 216 890-1118 173-395 (401)
145 1ds9_A Outer arm dynein; leuci 99.0 1.4E-12 4.6E-17 132.9 -9.0 129 920-1053 17-152 (198)
146 2chg_A Replication factor C sm 99.0 1.9E-09 6.6E-14 112.3 14.0 174 161-344 17-204 (226)
147 2qby_B CDC6 homolog 3, cell di 99.0 2.9E-09 9.9E-14 121.2 16.0 266 161-450 20-340 (384)
148 1fnn_A CDC6P, cell division co 99.0 5.7E-09 1.9E-13 119.1 17.3 300 161-475 17-385 (389)
149 4fdw_A Leucine rich hypothetic 99.0 1.5E-08 5E-13 114.6 19.8 196 890-1099 151-355 (401)
150 1ds9_A Outer arm dynein; leuci 99.0 1.5E-11 5.3E-16 125.0 -4.5 133 504-642 37-181 (198)
151 2v1u_A Cell division control p 99.0 4.3E-09 1.5E-13 120.0 14.9 270 161-450 19-352 (387)
152 4fs7_A Uncharacterized protein 98.9 7.2E-08 2.5E-12 109.6 22.9 196 890-1099 178-376 (394)
153 3g39_A Variable lymphocyte rec 98.9 6.8E-09 2.3E-13 102.1 11.3 86 993-1078 30-115 (170)
154 1hqc_A RUVB; extended AAA-ATPa 98.9 2E-09 7E-14 119.1 8.2 272 161-448 12-324 (324)
155 3g39_A Variable lymphocyte rec 98.9 9.4E-09 3.2E-13 101.1 11.6 103 995-1100 11-113 (170)
156 2r9u_A Variable lymphocyte rec 98.8 1.1E-08 3.9E-13 100.8 11.5 86 993-1078 33-118 (174)
157 1sxj_B Activator 1 37 kDa subu 98.8 8.3E-09 2.8E-13 114.3 11.3 177 161-346 21-212 (323)
158 2r9u_A Variable lymphocyte rec 98.8 1.8E-08 6E-13 99.4 11.8 102 996-1100 15-116 (174)
159 2qby_A CDC6 homolog 1, cell di 98.8 7.6E-09 2.6E-13 117.9 9.3 268 161-449 20-348 (386)
160 1iqp_A RFCS; clamp loader, ext 98.7 1E-07 3.5E-12 105.6 14.2 176 161-345 25-213 (327)
161 4fs7_A Uncharacterized protein 98.7 1.1E-06 3.7E-11 99.9 22.9 317 747-1094 67-393 (394)
162 3un9_A NLR family member X1; l 98.7 6.1E-10 2.1E-14 124.6 -4.4 158 896-1053 71-251 (372)
163 3un9_A NLR family member X1; l 98.7 9.9E-10 3.4E-14 122.9 -3.6 161 920-1080 71-254 (372)
164 2ra8_A Uncharacterized protein 98.5 1.7E-08 5.9E-13 111.6 2.4 156 940-1100 167-341 (362)
165 2ifg_A High affinity nerve gro 98.5 1.5E-07 5.3E-12 105.0 10.2 105 949-1055 12-117 (347)
166 2ra8_A Uncharacterized protein 98.5 3.1E-08 1.1E-12 109.5 3.9 157 941-1100 135-318 (362)
167 2ifg_A High affinity nerve gro 98.5 2.6E-07 8.8E-12 103.2 10.4 106 972-1079 11-117 (347)
168 1jr3_A DNA polymerase III subu 98.5 9.6E-07 3.3E-11 99.7 14.3 175 161-344 16-221 (373)
169 2chq_A Replication factor C sm 98.4 1.1E-06 3.6E-11 97.0 11.6 173 161-343 17-203 (319)
170 4gt6_A Cell surface protein; l 98.4 3.6E-05 1.2E-09 87.2 23.9 106 964-1075 260-367 (394)
171 3bos_A Putative DNA replicatio 98.3 5.9E-07 2E-11 94.4 7.5 171 162-344 29-217 (242)
172 1jbk_A CLPB protein; beta barr 98.3 7.7E-07 2.6E-11 89.8 6.4 139 161-308 22-194 (195)
173 4gt6_A Cell surface protein; l 98.2 0.00014 4.8E-09 82.3 23.5 129 939-1075 259-388 (394)
174 3h4m_A Proteasome-activating n 98.1 8.2E-06 2.8E-10 87.9 11.4 174 161-342 17-229 (285)
175 3pvs_A Replication-associated 98.1 6.4E-06 2.2E-10 93.7 10.8 169 161-343 26-214 (447)
176 1sxj_D Activator 1 41 kDa subu 98.1 8.1E-06 2.8E-10 91.3 10.8 174 161-343 37-234 (353)
177 3pfi_A Holliday junction ATP-d 98.1 7E-06 2.4E-10 91.0 10.2 174 161-343 29-226 (338)
178 2z4s_A Chromosomal replication 98.1 1.4E-05 4.8E-10 91.2 11.8 149 189-341 130-303 (440)
179 4h09_A Hypothetical leucine ri 98.1 0.00049 1.7E-08 77.4 24.6 127 941-1074 213-342 (379)
180 1sxj_A Activator 1 95 kDa subu 98.0 1.1E-05 3.6E-10 94.6 10.7 176 161-345 39-254 (516)
181 3u61_B DNA polymerase accessor 98.0 1.4E-05 4.6E-10 88.0 10.2 165 161-341 26-213 (324)
182 1sxj_E Activator 1 40 kDa subu 98.0 1.5E-05 5.1E-10 89.1 10.3 176 161-344 14-237 (354)
183 1d2n_A N-ethylmaleimide-sensit 98.0 5.8E-05 2E-09 80.4 14.0 159 161-335 33-228 (272)
184 3n70_A Transport activator; si 98.0 1.4E-05 4.7E-10 75.8 7.6 112 162-281 2-115 (145)
185 3e4g_A ATP synthase subunit S, 97.9 2.5E-06 8.6E-11 82.0 2.0 87 1018-1104 62-154 (176)
186 3syl_A Protein CBBX; photosynt 97.9 2.3E-05 7.9E-10 85.5 9.8 150 162-312 32-217 (309)
187 2p65_A Hypothetical protein PF 97.9 1.5E-05 5.1E-10 79.6 7.5 45 161-212 22-66 (187)
188 1a5t_A Delta prime, HOLB; zinc 97.9 0.00017 5.7E-09 79.2 15.8 164 167-344 8-205 (334)
189 3uk6_A RUVB-like 2; hexameric 97.8 6E-05 2E-09 84.6 11.4 95 243-343 190-302 (368)
190 3co5_A Putative two-component 97.8 9.3E-06 3.2E-10 76.7 3.9 110 161-281 4-115 (143)
191 1l8q_A Chromosomal replication 97.8 8E-05 2.7E-09 81.7 12.1 144 189-339 37-203 (324)
192 2qz4_A Paraplegin; AAA+, SPG7, 97.8 8.7E-05 3E-09 78.7 12.0 177 161-343 6-221 (262)
193 4h09_A Hypothetical leucine ri 97.8 0.0014 4.8E-08 73.6 22.2 131 964-1098 212-342 (379)
194 3e4g_A ATP synthase subunit S, 97.8 8.6E-06 2.9E-10 78.2 3.2 37 969-1005 61-97 (176)
195 3eie_A Vacuolar protein sortin 97.8 0.00017 5.7E-09 78.9 13.5 175 161-344 18-228 (322)
196 1sxj_C Activator 1 40 kDa subu 97.8 0.00015 5.1E-09 80.1 13.0 171 161-341 25-209 (340)
197 3d8b_A Fidgetin-like protein 1 97.7 0.00016 5.4E-09 80.2 12.7 178 161-345 84-296 (357)
198 3te6_A Regulatory protein SIR3 97.7 4.9E-05 1.7E-09 81.2 8.0 145 161-312 20-211 (318)
199 2qp9_X Vacuolar protein sortin 97.7 0.00044 1.5E-08 76.4 15.7 177 161-344 51-261 (355)
200 2bjv_A PSP operon transcriptio 97.7 0.00017 5.7E-09 76.5 11.6 114 161-281 6-150 (265)
201 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00075 2.6E-08 73.4 16.4 179 161-345 12-224 (322)
202 3rw6_A Nuclear RNA export fact 97.6 3.8E-05 1.3E-09 79.9 5.7 78 539-617 168-257 (267)
203 1io0_A Tropomodulin; LRR prote 97.6 8.3E-06 2.8E-10 81.0 0.4 42 940-981 31-77 (185)
204 3b9p_A CG5977-PA, isoform A; A 97.6 0.00043 1.5E-08 74.8 13.7 175 161-344 21-233 (297)
205 1io0_A Tropomodulin; LRR prote 97.6 3.3E-05 1.1E-09 76.6 4.4 111 509-621 30-161 (185)
206 3ec2_A DNA replication protein 97.6 4.7E-05 1.6E-09 75.3 5.1 110 166-281 19-142 (180)
207 3cf0_A Transitional endoplasmi 97.6 0.00055 1.9E-08 73.8 13.7 171 161-339 15-223 (301)
208 2zan_A Vacuolar protein sortin 97.5 0.0011 3.9E-08 75.5 16.1 181 161-344 134-345 (444)
209 2gno_A DNA polymerase III, gam 97.5 0.00047 1.6E-08 73.9 12.1 138 166-312 2-152 (305)
210 3hu3_A Transitional endoplasmi 97.5 0.00046 1.6E-08 79.2 12.7 175 161-343 204-414 (489)
211 1ojl_A Transcriptional regulat 97.5 0.00042 1.4E-08 74.6 11.7 113 161-281 2-146 (304)
212 2w58_A DNAI, primosome compone 97.5 5.3E-05 1.8E-09 76.6 4.4 108 168-281 36-158 (202)
213 3vfd_A Spastin; ATPase, microt 97.5 0.0005 1.7E-08 77.3 12.7 177 161-344 115-326 (389)
214 3rw6_A Nuclear RNA export fact 97.5 2.1E-05 7.3E-10 81.9 1.1 105 537-643 137-259 (267)
215 3pxg_A Negative regulator of g 97.5 0.00034 1.2E-08 80.5 10.7 139 161-312 180-338 (468)
216 1ofh_A ATP-dependent HSL prote 97.4 0.00053 1.8E-08 74.7 11.8 144 161-311 15-214 (310)
217 4fcw_A Chaperone protein CLPB; 97.4 0.00044 1.5E-08 75.3 10.4 119 161-281 17-169 (311)
218 2kjq_A DNAA-related protein; s 97.3 9.3E-05 3.2E-09 70.0 3.5 85 191-281 38-124 (149)
219 1qvr_A CLPB protein; coiled co 97.3 0.00046 1.6E-08 86.1 10.7 142 161-311 170-344 (854)
220 1in4_A RUVB, holliday junction 97.3 0.0006 2E-08 74.8 10.1 173 161-343 25-222 (334)
221 1lv7_A FTSH; alpha/beta domain 97.2 0.0031 1.1E-07 66.3 14.4 173 161-341 12-222 (257)
222 4b4t_J 26S protease regulatory 97.2 0.0027 9.4E-08 69.5 13.5 169 161-337 148-354 (405)
223 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0012 4.1E-08 81.5 11.5 144 161-312 186-362 (758)
224 3pxi_A Negative regulator of g 97.1 0.0014 4.7E-08 80.8 11.7 149 161-311 491-674 (758)
225 3pxi_A Negative regulator of g 97.1 0.0013 4.6E-08 80.9 10.8 139 161-312 180-338 (758)
226 4b4t_H 26S protease regulatory 97.0 0.0017 5.7E-08 72.2 9.7 169 161-337 209-415 (467)
227 4b4t_K 26S protease regulatory 97.0 0.0036 1.2E-07 69.7 12.4 169 161-337 172-379 (428)
228 4b4t_L 26S protease subunit RP 97.0 0.0051 1.8E-07 68.6 13.6 169 161-337 181-387 (437)
229 2ce7_A Cell division protein F 96.9 0.0052 1.8E-07 69.8 12.6 169 161-337 16-221 (476)
230 2c9o_A RUVB-like 1; hexameric 96.8 0.0035 1.2E-07 71.9 10.4 95 244-344 297-410 (456)
231 2r44_A Uncharacterized protein 96.8 0.0015 5.1E-08 71.7 7.0 138 161-312 27-198 (331)
232 4b4t_M 26S protease regulatory 96.8 0.0035 1.2E-07 69.9 9.9 169 161-337 181-387 (434)
233 2r62_A Cell division protease 96.7 0.00047 1.6E-08 73.2 1.8 147 161-312 11-196 (268)
234 4b4t_I 26S protease regulatory 96.6 0.0035 1.2E-07 68.9 8.3 169 161-337 182-388 (437)
235 3cf2_A TER ATPase, transitiona 96.6 0.0079 2.7E-07 72.5 11.9 170 161-338 204-408 (806)
236 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.006 2E-07 69.8 10.0 138 161-312 22-196 (500)
237 2qgz_A Helicase loader, putati 96.5 0.001 3.6E-08 71.5 3.3 58 166-228 133-190 (308)
238 1qvr_A CLPB protein; coiled co 96.4 0.0078 2.7E-07 75.0 10.8 119 161-281 558-710 (854)
239 3m6a_A ATP-dependent protease 96.4 0.0072 2.5E-07 70.7 9.7 143 161-312 81-266 (543)
240 3t15_A Ribulose bisphosphate c 96.4 0.0055 1.9E-07 65.5 7.9 60 188-252 35-109 (293)
241 2x8a_A Nuclear valosin-contain 96.4 0.018 6.1E-07 60.7 11.6 146 161-312 10-191 (274)
242 1tue_A Replication protein E1; 96.4 0.0012 4E-08 64.4 2.2 23 190-212 59-81 (212)
243 1r6b_X CLPA protein; AAA+, N-t 96.3 0.018 6.1E-07 71.0 13.0 116 161-281 458-607 (758)
244 1um8_A ATP-dependent CLP prote 96.3 0.015 5.1E-07 64.9 10.9 22 190-211 73-94 (376)
245 1ixz_A ATP-dependent metallopr 96.2 0.026 9E-07 58.9 11.7 168 161-337 16-221 (254)
246 1iy2_A ATP-dependent metallopr 96.1 0.039 1.3E-06 58.4 12.6 168 161-337 40-245 (278)
247 1ypw_A Transitional endoplasmi 96.1 0.011 3.6E-07 72.8 9.0 169 161-337 204-407 (806)
248 2dhr_A FTSH; AAA+ protein, hex 96.0 0.049 1.7E-06 62.2 13.6 169 161-337 31-236 (499)
249 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0027 9.3E-08 66.9 2.7 57 190-252 124-192 (331)
250 1ye8_A Protein THEP1, hypothet 95.9 0.056 1.9E-06 52.5 11.8 22 191-212 2-23 (178)
251 1g8p_A Magnesium-chelatase 38 95.9 0.012 4.2E-07 65.0 8.0 44 161-211 24-67 (350)
252 2orw_A Thymidine kinase; TMTK, 95.2 0.021 7.3E-07 55.9 6.0 85 191-281 5-112 (184)
253 1pgv_A TMD-1, tropomodulin TMD 95.0 0.0074 2.5E-07 59.1 1.9 14 942-955 38-51 (197)
254 2eyu_A Twitching motility prot 95.0 0.052 1.8E-06 56.4 8.3 89 190-285 26-136 (261)
255 3rfe_A Platelet glycoprotein I 94.9 0.038 1.3E-06 50.4 6.2 53 544-598 11-66 (130)
256 1pgv_A TMD-1, tropomodulin TMD 94.7 0.019 6.4E-07 56.2 3.9 89 891-979 35-136 (197)
257 3k1j_A LON protease, ATP-depen 94.7 0.046 1.6E-06 65.0 8.1 43 161-212 41-83 (604)
258 3jvv_A Twitching mobility prot 94.7 0.092 3.1E-06 57.2 9.7 92 190-286 124-235 (356)
259 1rz3_A Hypothetical protein rb 94.7 0.035 1.2E-06 55.5 5.9 42 166-211 3-44 (201)
260 3ice_A Transcription terminati 94.3 0.041 1.4E-06 59.2 5.6 34 172-211 163-196 (422)
261 1jr3_D DNA polymerase III, del 94.3 0.2 7E-06 54.7 11.6 151 189-342 18-183 (343)
262 2ewv_A Twitching motility prot 94.1 0.12 4.3E-06 56.8 9.3 91 190-285 137-247 (372)
263 2r8r_A Sensor protein; KDPD, P 94.0 0.086 2.9E-06 52.5 6.9 87 191-282 8-127 (228)
264 2b8t_A Thymidine kinase; deoxy 93.9 0.13 4.5E-06 51.6 8.0 88 190-282 13-126 (223)
265 2pze_A Cystic fibrosis transme 93.8 0.33 1.1E-05 49.2 11.1 22 191-212 36-57 (229)
266 3l0o_A Transcription terminati 93.8 0.083 2.9E-06 56.7 6.6 35 171-211 163-197 (427)
267 3upu_A ATP-dependent DNA helic 93.7 0.24 8.3E-06 56.5 11.1 103 167-281 31-164 (459)
268 3c8u_A Fructokinase; YP_612366 93.6 0.051 1.7E-06 54.6 4.6 24 188-211 21-44 (208)
269 3lw7_A Adenylate kinase relate 93.6 0.03 1E-06 54.5 2.8 19 191-209 3-21 (179)
270 1gvn_B Zeta; postsegregational 93.6 0.062 2.1E-06 56.9 5.4 42 168-211 14-55 (287)
271 1zp6_A Hypothetical protein AT 93.6 0.036 1.2E-06 54.8 3.4 23 190-212 10-32 (191)
272 1qhx_A CPT, protein (chloramph 93.5 0.033 1.1E-06 54.4 2.8 22 190-211 4-25 (178)
273 3nh6_A ATP-binding cassette SU 93.4 0.13 4.6E-06 54.5 7.6 22 190-211 81-102 (306)
274 1ly1_A Polynucleotide kinase; 93.4 0.037 1.3E-06 54.1 3.0 22 190-211 3-24 (181)
275 3kb2_A SPBC2 prophage-derived 93.3 0.036 1.2E-06 53.8 2.8 22 190-211 2-23 (173)
276 1g5t_A COB(I)alamin adenosyltr 93.3 0.092 3.2E-06 51.0 5.5 48 235-282 112-163 (196)
277 2p5t_B PEZT; postsegregational 93.2 0.072 2.5E-06 55.3 5.1 42 168-211 13-54 (253)
278 3vaa_A Shikimate kinase, SK; s 93.2 0.034 1.2E-06 55.4 2.5 22 190-211 26-47 (199)
279 2ga8_A Hypothetical 39.9 kDa p 93.2 0.089 3E-06 56.4 5.7 45 164-211 2-46 (359)
280 1kgd_A CASK, peripheral plasma 93.1 0.04 1.4E-06 53.8 2.7 22 190-211 6-27 (180)
281 2hf9_A Probable hydrogenase ni 93.0 0.082 2.8E-06 53.9 5.2 25 188-212 37-61 (226)
282 3hws_A ATP-dependent CLP prote 93.0 0.052 1.8E-06 60.1 3.8 50 162-211 16-73 (363)
283 3cf2_A TER ATPase, transitiona 93.0 0.3 1E-05 58.8 10.6 145 161-312 477-661 (806)
284 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.22 7.4E-06 53.8 8.5 87 191-282 173-275 (330)
285 3uie_A Adenylyl-sulfate kinase 92.9 0.058 2E-06 53.8 3.6 23 189-211 25-47 (200)
286 3trf_A Shikimate kinase, SK; a 92.8 0.042 1.4E-06 54.0 2.5 22 190-211 6-27 (185)
287 3hr8_A Protein RECA; alpha and 92.8 0.11 3.6E-06 56.5 5.8 44 189-234 61-104 (356)
288 1kag_A SKI, shikimate kinase I 92.8 0.042 1.4E-06 53.3 2.4 22 190-211 5-26 (173)
289 3tqc_A Pantothenate kinase; bi 92.7 0.11 3.7E-06 55.6 5.6 45 164-211 70-114 (321)
290 2rhm_A Putative kinase; P-loop 92.6 0.067 2.3E-06 52.9 3.7 23 189-211 5-27 (193)
291 3fwy_A Light-independent proto 92.6 0.058 2E-06 57.7 3.3 24 188-211 47-70 (314)
292 1nks_A Adenylate kinase; therm 92.6 0.057 2E-06 53.4 3.1 22 190-211 2-23 (194)
293 2wsm_A Hydrogenase expression/ 92.6 0.084 2.9E-06 53.6 4.4 40 166-212 14-53 (221)
294 1knq_A Gluconate kinase; ALFA/ 92.5 0.063 2.1E-06 52.1 3.2 23 189-211 8-30 (175)
295 3f9v_A Minichromosome maintena 92.5 0.022 7.5E-07 67.2 -0.2 87 191-281 329-443 (595)
296 4gp7_A Metallophosphoesterase; 92.4 0.058 2E-06 52.1 2.8 22 190-211 10-31 (171)
297 2bdt_A BH3686; alpha-beta prot 92.4 0.065 2.2E-06 52.8 3.3 22 190-211 3-24 (189)
298 3e1s_A Exodeoxyribonuclease V, 92.3 0.36 1.2E-05 56.4 9.9 83 191-279 206-313 (574)
299 2ze6_A Isopentenyl transferase 92.3 0.064 2.2E-06 55.7 3.0 22 190-211 2-23 (253)
300 3tui_C Methionine import ATP-b 92.2 0.19 6.6E-06 54.4 6.8 54 234-287 173-229 (366)
301 1odf_A YGR205W, hypothetical 3 92.2 0.13 4.4E-06 54.3 5.4 24 188-211 30-53 (290)
302 4eun_A Thermoresistant glucoki 92.2 0.066 2.3E-06 53.3 3.0 22 190-211 30-51 (200)
303 3t61_A Gluconokinase; PSI-biol 92.1 0.053 1.8E-06 54.2 2.2 23 189-211 18-40 (202)
304 2qt1_A Nicotinamide riboside k 92.0 0.085 2.9E-06 52.9 3.6 24 188-211 20-43 (207)
305 3tr0_A Guanylate kinase, GMP k 92.0 0.07 2.4E-06 53.4 3.0 22 190-211 8-29 (205)
306 1kht_A Adenylate kinase; phosp 92.0 0.066 2.3E-06 52.9 2.8 22 190-211 4-25 (192)
307 3iij_A Coilin-interacting nucl 92.0 0.052 1.8E-06 53.0 2.0 23 189-211 11-33 (180)
308 3tau_A Guanylate kinase, GMP k 92.0 0.068 2.3E-06 53.6 2.8 23 190-212 9-31 (208)
309 1z47_A CYSA, putative ABC-tran 92.0 0.39 1.3E-05 52.0 8.9 21 191-211 43-63 (355)
310 1zuh_A Shikimate kinase; alpha 92.0 0.062 2.1E-06 51.8 2.4 24 188-211 6-29 (168)
311 1ukz_A Uridylate kinase; trans 91.9 0.085 2.9E-06 52.7 3.5 24 188-211 14-37 (203)
312 3asz_A Uridine kinase; cytidin 91.9 0.083 2.9E-06 53.1 3.4 23 189-211 6-28 (211)
313 1tev_A UMP-CMP kinase; ploop, 91.9 0.074 2.5E-06 52.7 3.0 22 190-211 4-25 (196)
314 2jaq_A Deoxyguanosine kinase; 91.9 0.07 2.4E-06 53.4 2.8 21 191-211 2-22 (205)
315 1uf9_A TT1252 protein; P-loop, 91.9 0.083 2.8E-06 52.7 3.3 24 188-211 7-30 (203)
316 3a00_A Guanylate kinase, GMP k 91.8 0.058 2E-06 53.0 2.0 22 190-211 2-23 (186)
317 1ex7_A Guanylate kinase; subst 91.8 0.049 1.7E-06 53.1 1.4 21 191-211 3-23 (186)
318 2if2_A Dephospho-COA kinase; a 91.8 0.075 2.6E-06 53.1 2.9 21 191-211 3-23 (204)
319 3umf_A Adenylate kinase; rossm 91.8 0.086 2.9E-06 52.8 3.2 25 187-211 27-51 (217)
320 1xjc_A MOBB protein homolog; s 91.7 0.077 2.6E-06 50.5 2.6 24 188-211 3-26 (169)
321 2qor_A Guanylate kinase; phosp 91.7 0.058 2E-06 54.0 1.9 23 189-211 12-34 (204)
322 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.082 2.8E-06 55.2 3.1 23 189-211 4-26 (260)
323 3vr4_D V-type sodium ATPase su 91.6 0.14 4.7E-06 56.7 4.9 24 191-214 153-176 (465)
324 1jjv_A Dephospho-COA kinase; P 91.6 0.091 3.1E-06 52.6 3.3 22 190-211 3-24 (206)
325 1y63_A LMAJ004144AAA protein; 91.6 0.081 2.8E-06 51.9 2.8 23 189-211 10-32 (184)
326 1lvg_A Guanylate kinase, GMP k 91.6 0.064 2.2E-06 53.3 2.1 22 190-211 5-26 (198)
327 1via_A Shikimate kinase; struc 91.6 0.075 2.6E-06 51.6 2.5 21 191-211 6-26 (175)
328 2yvu_A Probable adenylyl-sulfa 91.5 0.1 3.6E-06 51.2 3.6 24 188-211 12-35 (186)
329 3io5_A Recombination and repai 91.5 0.2 6.8E-06 52.6 5.7 47 191-237 30-76 (333)
330 1htw_A HI0065; nucleotide-bind 91.5 0.1 3.5E-06 49.4 3.3 22 190-211 34-55 (158)
331 3ney_A 55 kDa erythrocyte memb 91.5 0.083 2.8E-06 51.8 2.7 23 189-211 19-41 (197)
332 3tlx_A Adenylate kinase 2; str 91.5 0.16 5.5E-06 52.3 5.0 24 188-211 28-51 (243)
333 1v43_A Sugar-binding transport 91.5 0.51 1.7E-05 51.5 9.2 21 191-211 39-59 (372)
334 2c95_A Adenylate kinase 1; tra 91.4 0.079 2.7E-06 52.6 2.5 22 190-211 10-31 (196)
335 2j41_A Guanylate kinase; GMP, 91.4 0.089 3E-06 52.7 3.0 23 190-212 7-29 (207)
336 3cm0_A Adenylate kinase; ATP-b 91.4 0.092 3.2E-06 51.5 3.0 22 190-211 5-26 (186)
337 1cke_A CK, MSSA, protein (cyti 91.3 0.092 3.2E-06 53.5 3.0 22 190-211 6-27 (227)
338 2iyv_A Shikimate kinase, SK; t 91.2 0.072 2.5E-06 52.2 2.0 21 191-211 4-24 (184)
339 2bbw_A Adenylate kinase 4, AK4 91.2 0.095 3.3E-06 54.2 3.0 23 189-211 27-49 (246)
340 1sky_E F1-ATPase, F1-ATP synth 91.2 0.2 6.7E-06 56.0 5.6 22 191-212 153-174 (473)
341 2bwj_A Adenylate kinase 5; pho 91.2 0.096 3.3E-06 52.0 2.9 22 190-211 13-34 (199)
342 4akg_A Glutathione S-transfera 91.1 0.43 1.5E-05 65.4 9.8 118 191-312 1269-1431(2695)
343 1qf9_A UMP/CMP kinase, protein 91.1 0.11 3.6E-06 51.4 3.1 23 189-211 6-28 (194)
344 2f1r_A Molybdopterin-guanine d 91.1 0.089 3E-06 50.5 2.4 22 190-211 3-24 (171)
345 2plr_A DTMP kinase, probable t 91.1 0.1 3.5E-06 52.5 3.0 23 190-212 5-27 (213)
346 3rfe_A Platelet glycoprotein I 91.1 0.3 1E-05 44.3 5.9 55 1021-1077 12-67 (130)
347 2cdn_A Adenylate kinase; phosp 91.1 0.1 3.5E-06 52.0 3.0 24 188-211 19-42 (201)
348 1g41_A Heat shock protein HSLU 91.0 0.13 4.5E-06 57.3 4.1 51 161-211 15-72 (444)
349 3aez_A Pantothenate kinase; tr 91.0 0.11 3.8E-06 55.5 3.4 24 188-211 89-112 (312)
350 2pt5_A Shikimate kinase, SK; a 91.0 0.1 3.4E-06 50.2 2.7 21 191-211 2-22 (168)
351 3rlf_A Maltose/maltodextrin im 90.9 0.28 9.7E-06 53.5 6.5 21 191-211 31-51 (381)
352 1znw_A Guanylate kinase, GMP k 90.9 0.11 3.7E-06 52.1 3.0 22 190-211 21-42 (207)
353 1uj2_A Uridine-cytidine kinase 90.9 0.11 3.7E-06 54.0 3.1 24 188-211 21-44 (252)
354 1e6c_A Shikimate kinase; phosp 90.8 0.088 3E-06 50.9 2.2 21 191-211 4-24 (173)
355 2yyz_A Sugar ABC transporter, 90.8 0.38 1.3E-05 52.2 7.3 21 191-211 31-51 (359)
356 2grj_A Dephospho-COA kinase; T 90.7 0.12 4.2E-06 50.7 3.0 24 188-211 11-34 (192)
357 2vli_A Antibiotic resistance p 90.6 0.084 2.9E-06 51.7 1.8 23 189-211 5-27 (183)
358 2pbr_A DTMP kinase, thymidylat 90.5 0.11 3.9E-06 51.3 2.8 21 191-211 2-22 (195)
359 4e22_A Cytidylate kinase; P-lo 90.5 0.12 4.2E-06 53.5 3.0 22 190-211 28-49 (252)
360 2jeo_A Uridine-cytidine kinase 90.5 0.14 4.7E-06 52.9 3.4 23 189-211 25-47 (245)
361 1z6g_A Guanylate kinase; struc 90.4 0.11 3.6E-06 52.6 2.4 22 190-211 24-45 (218)
362 2pez_A Bifunctional 3'-phospho 90.4 0.14 4.6E-06 49.9 3.1 23 189-211 5-27 (179)
363 1aky_A Adenylate kinase; ATP:A 90.4 0.11 3.8E-06 52.7 2.5 22 190-211 5-26 (220)
364 2f6r_A COA synthase, bifunctio 90.4 0.15 5.1E-06 53.8 3.6 24 188-211 74-97 (281)
365 1zd8_A GTP:AMP phosphotransfer 90.3 0.13 4.4E-06 52.5 2.9 23 189-211 7-29 (227)
366 1xx6_A Thymidine kinase; NESG, 90.2 0.9 3.1E-05 44.3 8.8 89 190-282 9-118 (191)
367 1ny5_A Transcriptional regulat 90.2 0.66 2.3E-05 51.4 8.9 112 162-281 138-281 (387)
368 4dkx_A RAS-related protein RAB 90.2 0.32 1.1E-05 48.8 5.7 22 191-212 15-36 (216)
369 1rj9_A FTSY, signal recognitio 90.1 0.13 4.4E-06 54.7 2.9 23 189-211 102-124 (304)
370 2i3b_A HCR-ntpase, human cance 90.1 0.12 4.1E-06 50.6 2.4 21 191-211 3-23 (189)
371 1s96_A Guanylate kinase, GMP k 90.1 0.14 4.8E-06 51.5 3.0 22 190-211 17-38 (219)
372 1zu4_A FTSY; GTPase, signal re 90.1 0.35 1.2E-05 51.8 6.2 25 187-211 103-127 (320)
373 3gqb_B V-type ATP synthase bet 90.1 0.21 7.1E-06 55.2 4.5 24 191-214 149-172 (464)
374 1nn5_A Similar to deoxythymidy 90.1 0.13 4.5E-06 51.8 2.8 22 190-211 10-31 (215)
375 1gtv_A TMK, thymidylate kinase 90.1 0.099 3.4E-06 52.7 1.8 21 191-211 2-22 (214)
376 2wwf_A Thymidilate kinase, put 90.0 0.14 4.7E-06 51.5 2.9 23 189-211 10-32 (212)
377 3e70_C DPA, signal recognition 90.0 0.24 8.2E-06 53.2 4.8 24 188-211 128-151 (328)
378 2ck3_D ATP synthase subunit be 89.9 0.36 1.2E-05 53.7 6.2 52 172-230 142-193 (482)
379 4a74_A DNA repair and recombin 89.9 0.16 5.6E-06 51.8 3.3 22 190-211 26-47 (231)
380 3fb4_A Adenylate kinase; psych 89.9 0.14 4.8E-06 51.7 2.8 21 191-211 2-22 (216)
381 1yrb_A ATP(GTP)binding protein 89.8 0.18 6.1E-06 52.7 3.7 25 187-211 12-36 (262)
382 2wji_A Ferrous iron transport 89.8 0.22 7.6E-06 47.6 4.0 23 190-212 4-26 (165)
383 2z0h_A DTMP kinase, thymidylat 89.8 0.15 5E-06 50.6 2.8 21 191-211 2-22 (197)
384 1m7g_A Adenylylsulfate kinase; 89.7 0.17 5.8E-06 50.8 3.3 23 189-211 25-47 (211)
385 3b9q_A Chloroplast SRP recepto 89.7 0.17 5.9E-06 53.7 3.4 24 188-211 99-122 (302)
386 2r9v_A ATP synthase subunit al 89.7 0.45 1.5E-05 53.3 6.8 35 191-229 177-213 (515)
387 3dl0_A Adenylate kinase; phosp 89.7 0.15 5.1E-06 51.5 2.8 21 191-211 2-22 (216)
388 2ehv_A Hypothetical protein PH 89.5 0.16 5.5E-06 52.6 3.0 22 190-211 31-52 (251)
389 3p32_A Probable GTPase RV1496/ 89.5 0.31 1.1E-05 53.4 5.4 24 188-211 78-101 (355)
390 3d3q_A TRNA delta(2)-isopenten 89.5 0.17 5.7E-06 54.2 3.0 22 190-211 8-29 (340)
391 1v5w_A DMC1, meiotic recombina 89.5 0.45 1.5E-05 51.8 6.6 44 189-232 122-169 (343)
392 2onk_A Molybdate/tungstate ABC 89.4 0.15 5.2E-06 52.1 2.7 22 190-211 25-46 (240)
393 2v54_A DTMP kinase, thymidylat 89.4 0.16 5.5E-06 50.6 2.8 23 190-212 5-27 (204)
394 3a8t_A Adenylate isopentenyltr 89.4 0.2 6.8E-06 53.4 3.5 23 189-211 40-62 (339)
395 3nwj_A ATSK2; P loop, shikimat 89.3 0.15 5E-06 52.5 2.4 21 191-211 50-70 (250)
396 2px0_A Flagellar biosynthesis 89.3 0.18 6E-06 53.5 3.1 23 189-211 105-127 (296)
397 2zej_A Dardarin, leucine-rich 89.3 0.16 5.4E-06 49.7 2.6 22 191-212 4-25 (184)
398 2pcj_A ABC transporter, lipopr 89.3 0.17 5.8E-06 51.2 2.8 21 191-211 32-52 (224)
399 2zr9_A Protein RECA, recombina 89.2 0.77 2.6E-05 49.9 8.2 47 190-238 62-108 (349)
400 2c61_A A-type ATP synthase non 89.2 0.28 9.6E-06 54.6 4.7 39 191-229 154-194 (469)
401 1vma_A Cell division protein F 89.2 0.2 7E-06 53.2 3.5 24 188-211 103-126 (306)
402 2z43_A DNA repair and recombin 89.1 0.48 1.7E-05 51.1 6.5 42 190-231 108-153 (324)
403 1zak_A Adenylate kinase; ATP:A 89.1 0.17 5.6E-06 51.4 2.7 23 189-211 5-27 (222)
404 1xp8_A RECA protein, recombina 89.1 0.79 2.7E-05 50.0 8.2 47 190-238 75-121 (366)
405 3tif_A Uncharacterized ABC tra 89.1 0.17 6E-06 51.5 2.8 21 191-211 33-53 (235)
406 1vht_A Dephospho-COA kinase; s 89.0 0.2 7E-06 50.5 3.3 23 189-211 4-26 (218)
407 1oix_A RAS-related protein RAB 89.0 0.23 7.8E-06 48.9 3.5 25 188-212 28-52 (191)
408 3lnc_A Guanylate kinase, GMP k 89.0 0.14 4.8E-06 52.3 2.0 22 190-211 28-50 (231)
409 1sq5_A Pantothenate kinase; P- 89.0 0.22 7.4E-06 53.4 3.5 24 188-211 79-102 (308)
410 3r20_A Cytidylate kinase; stru 88.9 0.2 6.8E-06 50.7 3.0 22 190-211 10-31 (233)
411 2dyk_A GTP-binding protein; GT 88.9 0.21 7.2E-06 47.3 3.1 23 190-212 2-24 (161)
412 3be4_A Adenylate kinase; malar 88.9 0.19 6.5E-06 50.7 2.9 22 190-211 6-27 (217)
413 3crm_A TRNA delta(2)-isopenten 88.9 0.19 6.6E-06 53.3 3.0 22 190-211 6-27 (323)
414 3sr0_A Adenylate kinase; phosp 88.8 0.19 6.6E-06 49.9 2.8 21 191-211 2-22 (206)
415 1np6_A Molybdopterin-guanine d 88.8 0.19 6.4E-06 48.4 2.6 23 189-211 6-28 (174)
416 2qe7_A ATP synthase subunit al 88.8 0.48 1.7E-05 53.0 6.2 35 191-229 164-200 (502)
417 3dzd_A Transcriptional regulat 88.8 0.92 3.2E-05 49.8 8.5 113 161-281 129-272 (368)
418 1e4v_A Adenylate kinase; trans 88.7 0.2 6.8E-06 50.4 2.9 21 191-211 2-22 (214)
419 3b85_A Phosphate starvation-in 88.6 0.15 5.3E-06 50.7 2.0 21 191-211 24-44 (208)
420 2cvh_A DNA repair and recombin 88.6 0.21 7.1E-06 50.5 3.0 22 190-211 21-42 (220)
421 3ake_A Cytidylate kinase; CMP 88.6 0.2 6.7E-06 50.1 2.8 21 191-211 4-24 (208)
422 2wjg_A FEOB, ferrous iron tran 88.6 0.32 1.1E-05 47.5 4.3 25 188-212 6-30 (188)
423 2xb4_A Adenylate kinase; ATP-b 88.6 0.2 6.7E-06 50.8 2.8 21 191-211 2-22 (223)
424 1fx0_B ATP synthase beta chain 88.6 0.5 1.7E-05 52.8 6.1 53 172-231 154-206 (498)
425 3gfo_A Cobalt import ATP-bindi 88.5 0.2 6.8E-06 52.4 2.8 21 191-211 36-56 (275)
426 2ged_A SR-beta, signal recogni 88.5 0.31 1.1E-05 48.0 4.1 25 188-212 47-71 (193)
427 2cbz_A Multidrug resistance-as 88.5 0.2 6.9E-06 51.2 2.8 21 191-211 33-53 (237)
428 3exa_A TRNA delta(2)-isopenten 88.5 0.22 7.4E-06 52.3 3.0 22 190-211 4-25 (322)
429 2og2_A Putative signal recogni 88.4 0.23 8E-06 53.9 3.3 24 188-211 156-179 (359)
430 2f7s_A C25KG, RAS-related prot 88.4 1.9 6.6E-05 43.0 10.1 25 188-212 24-48 (217)
431 1b0u_A Histidine permease; ABC 88.4 0.21 7.1E-06 52.0 2.8 21 191-211 34-54 (262)
432 3vr4_A V-type sodium ATPase ca 88.2 0.7 2.4E-05 52.4 7.0 48 172-229 221-268 (600)
433 1sgw_A Putative ABC transporte 88.2 0.18 6.3E-06 50.4 2.2 21 191-211 37-57 (214)
434 1ji0_A ABC transporter; ATP bi 88.2 0.22 7.5E-06 51.0 2.8 21 191-211 34-54 (240)
435 2olj_A Amino acid ABC transpor 88.1 0.22 7.5E-06 51.7 2.8 21 191-211 52-72 (263)
436 2f9l_A RAB11B, member RAS onco 88.1 0.23 8E-06 49.2 3.0 24 189-212 5-28 (199)
437 1fx0_A ATP synthase alpha chai 88.1 0.52 1.8E-05 52.8 5.9 35 191-229 165-201 (507)
438 1mv5_A LMRA, multidrug resista 88.1 0.24 8.1E-06 50.9 3.0 22 190-211 29-50 (243)
439 1c1y_A RAS-related protein RAP 88.1 1.4 4.9E-05 41.6 8.6 22 191-212 5-26 (167)
440 2d2e_A SUFC protein; ABC-ATPas 88.0 0.24 8.2E-06 51.1 3.0 21 191-211 31-51 (250)
441 1ak2_A Adenylate kinase isoenz 88.0 0.23 7.8E-06 50.8 2.8 23 189-211 16-38 (233)
442 1g6h_A High-affinity branched- 88.0 0.23 7.7E-06 51.5 2.8 21 191-211 35-55 (257)
443 1u94_A RECA protein, recombina 88.0 0.68 2.3E-05 50.4 6.7 44 190-235 64-107 (356)
444 3bh0_A DNAB-like replicative h 88.0 0.41 1.4E-05 51.3 5.0 44 190-235 69-112 (315)
445 4g1u_C Hemin import ATP-bindin 87.9 0.22 7.7E-06 51.8 2.7 21 191-211 39-59 (266)
446 2ce2_X GTPase HRAS; signaling 87.8 0.25 8.4E-06 47.0 2.8 22 191-212 5-26 (166)
447 2zu0_C Probable ATP-dependent 87.8 0.25 8.5E-06 51.5 3.0 21 191-211 48-68 (267)
448 2aka_B Dynamin-1; fusion prote 87.8 3.3 0.00011 43.9 12.1 43 170-213 8-50 (299)
449 3foz_A TRNA delta(2)-isopenten 87.8 0.25 8.6E-06 51.8 3.0 23 189-211 10-32 (316)
450 1vpl_A ABC transporter, ATP-bi 87.8 0.24 8.1E-06 51.2 2.8 21 191-211 43-63 (256)
451 2ff7_A Alpha-hemolysin translo 87.8 0.24 8.2E-06 50.9 2.8 21 191-211 37-57 (247)
452 2qmh_A HPR kinase/phosphorylas 87.7 0.28 9.7E-06 47.5 3.1 22 190-211 35-56 (205)
453 3mfy_A V-type ATP synthase alp 87.7 0.63 2.2E-05 52.5 6.2 34 172-211 216-249 (588)
454 3end_A Light-independent proto 87.7 0.27 9.3E-06 52.7 3.3 24 188-211 40-63 (307)
455 3kl4_A SRP54, signal recogniti 87.7 0.4 1.4E-05 53.4 4.7 24 188-211 96-119 (433)
456 2gza_A Type IV secretion syste 87.6 2.1 7.1E-05 46.8 10.4 21 191-211 177-197 (361)
457 2w0m_A SSO2452; RECA, SSPF, un 87.6 0.26 8.9E-06 50.3 3.0 22 190-211 24-45 (235)
458 3dm5_A SRP54, signal recogniti 87.5 0.51 1.7E-05 52.6 5.4 24 188-211 99-122 (443)
459 2ck3_A ATP synthase subunit al 87.5 0.56 1.9E-05 52.6 5.7 53 172-230 151-209 (510)
460 2qi9_C Vitamin B12 import ATP- 87.5 0.25 8.7E-06 50.7 2.8 21 191-211 28-48 (249)
461 2dr3_A UPF0273 protein PH0284; 87.5 0.45 1.6E-05 49.0 4.8 40 190-231 24-63 (247)
462 3oaa_A ATP synthase subunit al 87.5 0.71 2.4E-05 51.5 6.4 36 191-230 164-201 (513)
463 2ghi_A Transport protein; mult 87.4 0.26 8.7E-06 51.2 2.8 22 191-212 48-69 (260)
464 2ixe_A Antigen peptide transpo 87.4 0.26 8.7E-06 51.5 2.8 22 190-211 46-67 (271)
465 1n0w_A DNA repair protein RAD5 87.4 0.27 9.2E-06 50.6 3.0 22 190-211 25-46 (243)
466 1ltq_A Polynucleotide kinase; 87.4 0.27 9.1E-06 52.6 3.0 22 190-211 3-24 (301)
467 2v9p_A Replication protein E1; 87.4 0.27 9.4E-06 51.9 3.0 22 190-211 127-148 (305)
468 2j37_W Signal recognition part 87.3 0.55 1.9E-05 53.5 5.7 25 187-211 99-123 (504)
469 2nq2_C Hypothetical ABC transp 87.2 0.27 9.1E-06 50.8 2.8 21 191-211 33-53 (253)
470 2gj8_A MNME, tRNA modification 87.2 0.35 1.2E-05 46.5 3.5 23 190-212 5-27 (172)
471 2nzj_A GTP-binding protein REM 87.2 0.38 1.3E-05 46.2 3.8 24 189-212 4-27 (175)
472 3q72_A GTP-binding protein RAD 87.2 0.27 9.2E-06 46.9 2.7 22 191-212 4-25 (166)
473 2lkc_A Translation initiation 87.1 0.37 1.3E-05 46.5 3.7 25 188-212 7-31 (178)
474 2yz2_A Putative ABC transporte 87.1 0.27 9.3E-06 51.2 2.8 21 191-211 35-55 (266)
475 2ihy_A ABC transporter, ATP-bi 87.1 0.27 9.3E-06 51.5 2.8 21 191-211 49-69 (279)
476 3con_A GTPase NRAS; structural 87.1 0.27 9.4E-06 48.2 2.7 23 190-212 22-44 (190)
477 1ls1_A Signal recognition part 87.1 0.32 1.1E-05 51.6 3.4 23 189-211 98-120 (295)
478 2yv5_A YJEQ protein; hydrolase 87.1 0.37 1.3E-05 51.3 3.9 22 191-213 167-188 (302)
479 1z2a_A RAS-related protein RAB 87.0 0.36 1.2E-05 46.0 3.5 24 189-212 5-28 (168)
480 1cr0_A DNA primase/helicase; R 87.0 0.29 1E-05 52.1 3.1 22 190-211 36-57 (296)
481 1zd9_A ADP-ribosylation factor 87.0 2.1 7.1E-05 41.6 9.2 24 189-212 22-45 (188)
482 3qf4_A ABC transporter, ATP-bi 87.0 0.89 3E-05 53.5 7.5 22 190-211 370-391 (587)
483 1fzq_A ADP-ribosylation factor 86.9 0.37 1.3E-05 46.8 3.5 25 188-212 15-39 (181)
484 3sop_A Neuronal-specific septi 86.9 0.31 1.1E-05 50.8 3.1 21 191-211 4-24 (270)
485 2xxa_A Signal recognition part 86.9 0.33 1.1E-05 54.4 3.5 24 188-211 99-122 (433)
486 1m7b_A RND3/RHOE small GTP-bin 86.9 0.29 1E-05 47.7 2.8 24 189-212 7-30 (184)
487 2qu8_A Putative nucleolar GTP- 86.8 1.8 6.2E-05 43.7 8.9 25 188-212 28-52 (228)
488 2yhs_A FTSY, cell division pro 86.8 0.32 1.1E-05 54.7 3.2 24 188-211 292-315 (503)
489 1nlf_A Regulatory protein REPA 86.8 0.31 1.1E-05 51.4 3.1 22 190-211 31-52 (279)
490 3zvl_A Bifunctional polynucleo 86.8 0.28 9.5E-06 55.1 2.8 25 188-212 257-281 (416)
491 2hxs_A RAB-26, RAS-related pro 86.7 0.47 1.6E-05 45.7 4.2 25 188-212 5-29 (178)
492 1u8z_A RAS-related protein RAL 86.7 0.31 1E-05 46.5 2.8 23 190-212 5-27 (168)
493 3ihw_A Centg3; RAS, centaurin, 86.6 0.3 1E-05 47.7 2.7 24 189-212 20-43 (184)
494 2erx_A GTP-binding protein DI- 86.5 0.32 1.1E-05 46.6 2.8 23 190-212 4-26 (172)
495 3qf4_B Uncharacterized ABC tra 86.5 0.74 2.5E-05 54.4 6.4 22 190-211 382-403 (598)
496 2fz4_A DNA repair protein RAD2 86.5 2.8 9.4E-05 42.6 10.0 20 192-211 111-130 (237)
497 3b5x_A Lipid A export ATP-bind 86.5 1.4 4.8E-05 51.9 8.8 22 190-211 370-391 (582)
498 1q3t_A Cytidylate kinase; nucl 86.4 0.32 1.1E-05 49.8 2.8 24 188-211 15-38 (236)
499 2afh_E Nitrogenase iron protei 86.4 0.36 1.2E-05 51.2 3.4 23 189-211 2-24 (289)
500 3q85_A GTP-binding protein REM 86.4 0.42 1.4E-05 45.6 3.6 22 190-211 3-24 (169)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-46 Score=464.04 Aligned_cols=575 Identities=19% Similarity=0.143 Sum_probs=325.2
Q ss_pred CceeEEEEEeCCCCCcCch--hhhcCCCCcEEeccccCCCCCCCCccc-cCCCCcccEEEccCCCCcccc-cc---cccc
Q 001145 491 AQTRHSSVVCDSDLQTIPE--SLYEAKKLRTLNLLFSKGDLGEAPPKL-FSSFRYLRTLNLSGSGIKKLH-SS---ISCL 563 (1141)
Q Consensus 491 ~~~r~l~~~~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~l~~lp-~~---i~~L 563 (1141)
...+++.+..+.....+|. .+..+++|++|++ +.+.+....+.. +.++++|++|+|++|.++..+ .. ++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L--s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV--SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEEC--CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEEC--cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 4455555544432223344 5666666666665 333333222222 256666666666666665443 22 5566
Q ss_pred ccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCce
Q 001145 564 ISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVF 643 (1141)
Q Consensus 564 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 643 (1141)
++|++|++++|.+..... +.++++|++|++++|.....+|. ++++++|++|++++|.....+|..++.+++|++|++.
T Consensus 178 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp TTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 666666666666554322 25666666666666654444554 6666666666666664444555666666666666442
Q ss_pred EeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccC
Q 001145 644 IVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQ 723 (1141)
Q Consensus 644 ~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 723 (1141)
........ ....+++|+.|+++.+... ..++..+.
T Consensus 256 ~n~l~~~~-------------------------------~~~~l~~L~~L~L~~n~l~--------------~~ip~~~~ 290 (768)
T 3rgz_A 256 SNQFVGPI-------------------------------PPLPLKSLQYLSLAENKFT--------------GEIPDFLS 290 (768)
T ss_dssp SSCCEESC-------------------------------CCCCCTTCCEEECCSSEEE--------------ESCCCCSC
T ss_pred CCcccCcc-------------------------------CccccCCCCEEECcCCccC--------------CccCHHHH
Confidence 21110000 0003445555555432211 11222232
Q ss_pred C-CcCccEEEecccCCC-CCCcccCCCCCCCccEEEEeccCCCCCCCC--CCCCCCcceeeecCCCCceEeCCcccCCCC
Q 001145 724 P-HQNLKRLSVEGYSGD-RFPTWIGFPGLPNLTNIVLINCKRCENLPA--LGQLPFLRVIYMHGMHSVKSIDSGFYGRGS 799 (1141)
Q Consensus 724 ~-~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 799 (1141)
. +++|+.|++++|... .+|.++. .+++|+.|++++|.+...+|. ++.+++|++|++++|.....++..+.
T Consensus 291 ~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---- 364 (768)
T 3rgz_A 291 GACDTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT---- 364 (768)
T ss_dssp TTCTTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH----
T ss_pred hhcCcCCEEECcCCcCCCccchHHh--cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH----
Confidence 2 255666666555543 3444443 455666666666555444443 55566666666655543333332221
Q ss_pred CCccc-ccceeecccccccccccccCccccCCcccEEeeccCccccCCC----CCCCCCeEEEeccCcc--hhccccccc
Q 001145 800 GRPFQ-SLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMP----WFPSLQHLEFRNCNEM--IMKSATNFS 872 (1141)
Q Consensus 800 ~~~f~-~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp----~l~~L~~L~l~~~~~~--~~~~~~~~~ 872 (1141)
.++ +|+.|.+.++.-............+++|+.|++.+|.....+| .+++|+.|++++|... ....+..++
T Consensus 365 --~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 365 --NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp --HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred --hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 122 4555555443211111111111124556666666664333333 2556666666665532 222344555
Q ss_pred ceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeE
Q 001145 873 TLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEI 952 (1141)
Q Consensus 873 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L 952 (1141)
.|+.|.+..+.... ..+..+..+++|++|++++|.....+|..+..+++|+.|++++|.+.+.+|..++.+++|++|+|
T Consensus 443 ~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 443 KLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcccC-cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 56666655543221 22344556666777777776666566666666667777777777666666666666677777777
Q ss_pred ccCCCCccccccCCCCCCcCEEEEccCCCCCCccc---------------------------------------------
Q 001145 953 SECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPR--------------------------------------------- 987 (1141)
Q Consensus 953 s~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--------------------------------------------- 987 (1141)
++|++.+.+|..+..+++|+.|++++|...+.+|.
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 77766666666666666777777766655444432
Q ss_pred -------------------------ccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCC
Q 001145 988 -------------------------GLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTT 1042 (1141)
Q Consensus 988 -------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 1042 (1141)
.++.+++|+.|++++|.+...+|..+..+++|+.|+|++|.+.+.+|..++++++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 3344567888888888888888888888888888888888888888888888888
Q ss_pred cCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcchH----HhhccCCCCCcccee
Q 001145 1043 LQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRLE----SRCKKYVGEDWLKVA 1118 (1141)
Q Consensus 1043 L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L~----~~~~~~~~~~~~~i~ 1118 (1141)
|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+.+|+. ..+.++....+.|||.|- ..|....+++|++|+
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC--------
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCC
Confidence 888888888888888888888888888888888888888875 334566666677776432 378999999999999
Q ss_pred ccceee
Q 001145 1119 HIPHTY 1124 (1141)
Q Consensus 1119 ~i~~~~ 1124 (1141)
|+|++.
T Consensus 761 ~~~~~~ 766 (768)
T 3rgz_A 761 RSHHHH 766 (768)
T ss_dssp ------
T ss_pred CccccC
Confidence 999864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.6e-45 Score=458.11 Aligned_cols=600 Identities=19% Similarity=0.155 Sum_probs=459.6
Q ss_pred CceeEEEEEeCCCCCc---CchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCc-cccc--cccccc
Q 001145 491 AQTRHSSVVCDSDLQT---IPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIK-KLHS--SISCLI 564 (1141)
Q Consensus 491 ~~~r~l~~~~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~--~i~~L~ 564 (1141)
..++.+.+........ ++..+..++.|+.+++ +.+.+.. .+..|..+++|++|+|++|.++ .+|. .+++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~--~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL--SNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC--TTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCC--cCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 3556666554433333 6778888999999987 3333322 2355899999999999999987 4676 899999
Q ss_pred cCceEecCCCccc-ccchhh-hcCCCCcEEecCCCCCCcccCcc---ccCCCCCcEEEecCcccccccCcccCCCCCCCc
Q 001145 565 SLRYLNMSNTLIE-RLPESI-CDLVYLQVLNLSDCHDLIELPKR---LASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQT 639 (1141)
Q Consensus 565 ~L~~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 639 (1141)
+|++|+|++|.+. ..|..+ .++++|++|++++|......|.. +.++++|++|++++|......| ++.+++|++
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEF 204 (768)
T ss_dssp TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCE
T ss_pred CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCE
Confidence 9999999999886 445554 89999999999999866666666 7899999999999985443333 378899999
Q ss_pred cCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhh
Q 001145 640 LPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVL 719 (1141)
Q Consensus 640 L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1141)
|++....... .+..+..++-...+.+..-.. .......+..+++|+.|+++.+.... . .
T Consensus 205 L~Ls~n~l~~--~~~~l~~l~~L~~L~Ls~n~l----~~~~~~~l~~l~~L~~L~Ls~n~l~~--------------~-~ 263 (768)
T 3rgz_A 205 LDVSSNNFST--GIPFLGDCSALQHLDISGNKL----SGDFSRAISTCTELKLLNISSNQFVG--------------P-I 263 (768)
T ss_dssp EECCSSCCCS--CCCBCTTCCSCCEEECCSSCC----CSCHHHHTTTCSSCCEEECCSSCCEE--------------S-C
T ss_pred EECcCCcCCC--CCcccccCCCCCEEECcCCcC----CCcccHHHhcCCCCCEEECCCCcccC--------------c-c
Confidence 8775443221 112233333222444433221 12234567788899999988654321 0 1
Q ss_pred cccCCCcCccEEEecccCCC-CCCcccCCCCCCCccEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCceEeCCcccCC
Q 001145 720 DSLQPHQNLKRLSVEGYSGD-RFPTWIGFPGLPNLTNIVLINCKRCENLPA-LGQLPFLRVIYMHGMHSVKSIDSGFYGR 797 (1141)
Q Consensus 720 ~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 797 (1141)
.. ..+++|+.|++.+|... .+|.++. ..+++|+.|++++|.+...+|. ++.+++|+.|++++|.....++....+
T Consensus 264 ~~-~~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~- 340 (768)
T 3rgz_A 264 PP-LPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL- 340 (768)
T ss_dssp CC-CCCTTCCEEECCSSEEEESCCCCSC-TTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-
T ss_pred Cc-cccCCCCEEECcCCccCCccCHHHH-hhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-
Confidence 11 16788999999998876 7787765 2358999999999988776666 889999999999998766566544221
Q ss_pred CCCCcccccceeecccccccccccccCccccCC-cccEEeeccCccccCCCC------CCCCCeEEEeccCcc--hhccc
Q 001145 798 GSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFP-SLVKLFINKCERLKNMPW------FPSLQHLEFRNCNEM--IMKSA 868 (1141)
Q Consensus 798 ~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p-~L~~L~i~~c~~L~~lp~------l~~L~~L~l~~~~~~--~~~~~ 868 (1141)
.+++|+.|.+.++.-... .......++ +|+.|++++|..-..+|. +++|+.|++++|... ....+
T Consensus 341 ----~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 341 ----KMRGLKVLDLSFNEFSGE--LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp ----TCTTCCEEECCSSEEEEC--CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred ----cCCCCCEEeCcCCccCcc--ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 467888888876532211 111122344 899999999875433332 578999999998854 33456
Q ss_pred ccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCC
Q 001145 869 TNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLE 948 (1141)
Q Consensus 869 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~ 948 (1141)
..++.|+.|.+.++.... ..+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 415 ~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcCCCCCEEECcCCcccC-cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 778899999998764321 3356688899999999999998889999999999999999999999989999999999999
Q ss_pred EEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcC----------------
Q 001145 949 SLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPEN---------------- 1012 (1141)
Q Consensus 949 ~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------- 1012 (1141)
+|+|++|++.+.+|..+..+++|++|++++|...+.+|..++.+++|+.|++++|++...+|..
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 9999999999899999999999999999999998899999999999999999999876554432
Q ss_pred ------------------------------------------------------ccccCCcceEEecCCCCcccccccCC
Q 001145 1013 ------------------------------------------------------FRNLTMLKSLCILSCPELASLPDELQ 1038 (1141)
Q Consensus 1013 ------------------------------------------------------~~~l~~L~~L~L~~n~~~~~~~~~l~ 1038 (1141)
+..+++|+.|++++|++.+.+|..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 33457899999999999999999999
Q ss_pred CCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcchHHhhccCCCCCcccee
Q 001145 1039 HVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRLESRCKKYVGEDWLKVA 1118 (1141)
Q Consensus 1039 ~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~i~ 1118 (1141)
++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|++|++++|+--.
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g--------------- 718 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG--------------- 718 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE---------------
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc---------------
Confidence 99999999999999999999999999999999999999999999999999999999999995321
Q ss_pred ccceeeeCCccCCCCCcccCCCC
Q 001145 1119 HIPHTYIGSQLNPDKTNASSSLC 1141 (1141)
Q Consensus 1119 ~i~~~~~~~~~~~~~~~~~~~~~ 1141 (1141)
.||....-..+++..+.||+++|
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEEE
T ss_pred cCCCchhhccCCHHHhcCCchhc
Confidence 34444333455666788888887
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.7e-45 Score=434.37 Aligned_cols=289 Identities=20% Similarity=0.266 Sum_probs=232.9
Q ss_pred ccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc--CcccccccceEEEEEeCcch--h-------
Q 001145 164 VGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN--DEKVTKSFELKIWVCVNEDF--N------- 232 (1141)
Q Consensus 164 vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~------- 232 (1141)
|||++++++|.++|.... ....++|+|+|||||||||||+++|+ +.+++.+|+.++||++++.. +
T Consensus 131 ~GR~~~~~~l~~~L~~~~----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 699999999999997652 23578999999999999999999998 67899999999999998853 1
Q ss_pred --------------------------HHHHHHhcCc-ceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHH
Q 001145 233 --------------------------SQLRRLLRGR-RYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVA 285 (1141)
Q Consensus 233 --------------------------~~l~~~l~~k-~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~ 285 (1141)
..+++.++++ ||||||||||+.+...|.. .+||+||||||+..++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 2456677886 9999999999743223432 2799999999999999
Q ss_pred HhhCC-CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHh--hcc
Q 001145 286 TIVGT-IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYV--QES 362 (1141)
Q Consensus 286 ~~~~~-~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~--~~~ 362 (1141)
..++. ..+|++++|++++||+||.+++|+... .+.+.+++++|+++|+|+|||++++|+.++.+ .|..+ +.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~~~l~~ 353 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKMAQLNN 353 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHHHHhHH
Confidence 88753 357999999999999999999987543 45677899999999999999999999999765 25443 333
Q ss_pred cccccccCccchhHHHHhhccCCcchhhhhhc-----------cccccCCCceechHHHHHHHHHc--CCcccCcccccH
Q 001145 363 DLWNACEGENRILPALRLSYSHLPSHLKCCFT-----------FCSVFPKNFVIKKDNLTHLWIAE--GLIRSKDERKAL 429 (1141)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~W~ae--g~i~~~~~~~~~ 429 (1141)
..+.. ...++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+.....
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 33322 2455889999999999999999999 999999999999 8999999 999876633677
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCeecccchhHHHHHHHHhhcCceE
Q 001145 430 EDIANDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDLAQSVVGGEFV 479 (1141)
Q Consensus 430 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e~~ 479 (1141)
+++++ ||++|++++|++....+ ...+|+|||++|++|+.++.+++.
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 99999999999986543 345689999999999999887654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-39 Score=401.89 Aligned_cols=575 Identities=14% Similarity=0.078 Sum_probs=368.7
Q ss_pred CCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccc-cccccccCc
Q 001145 489 HLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHS-SISCLISLR 567 (1141)
Q Consensus 489 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~ 567 (1141)
.+..++++.+..+......+..+..+++|++|++ +.+.+....+..|.++++|++|+|++|.++.+|. .|+++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV--GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEEC--CSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEEC--CCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 3456666666665333333345666777777776 5555666666666677777777777777776665 467777777
Q ss_pred eEecCCCcccccc-hhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCc-cc--CCCCCCCccCce
Q 001145 568 YLNMSNTLIERLP-ESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPD-HI--GRLIQLQTLPVF 643 (1141)
Q Consensus 568 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i--~~l~~L~~L~~~ 643 (1141)
+|++++|.+..+| ..++++++|++|++++|......|..++++++|++|++++|. +..++. .+ ..+++|++|++.
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECC
Confidence 7777777776665 456777777777777766555555666677777777777663 333332 22 234555555432
Q ss_pred EeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccC
Q 001145 644 IVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQ 723 (1141)
Q Consensus 644 ~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 723 (1141)
..... . .....+..+.+|+.|.+...... ..........+
T Consensus 180 ~n~l~-----------------------~------~~~~~~~~l~~L~~L~l~~~~l~----------~~~~~~~~~~l- 219 (680)
T 1ziw_A 180 SNQIK-----------------------E------FSPGCFHAIGRLFGLFLNNVQLG----------PSLTEKLCLEL- 219 (680)
T ss_dssp TCCCC-----------------------C------BCTTGGGGSSEECEEECTTCCCH----------HHHHHHHHHHH-
T ss_pred CCccc-----------------------c------cChhhhhhhhhhhhhhccccccC----------hhhHHHHHHHh-
Confidence 11000 0 00112333445555554322110 01111111111
Q ss_pred CCcCccEEEecccCCCCCC-cccCCCCC--CCccEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCceEeCCcccCCCC
Q 001145 724 PHQNLKRLSVEGYSGDRFP-TWIGFPGL--PNLTNIVLINCKRCENLPA-LGQLPFLRVIYMHGMHSVKSIDSGFYGRGS 799 (1141)
Q Consensus 724 ~~~~L~~L~l~~~~~~~~p-~~~~~~~l--~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 799 (1141)
..++|+.|+++++.....+ .++. .+ ++|+.|++++|.+....+. ++.+++|+.|++++|......+..+.
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~~~--~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---- 293 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQLSTTSNTTFL--GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH---- 293 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTG--GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT----
T ss_pred hhccccEEEccCCcccccChhHhh--ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc----
Confidence 2356667777666654432 3332 22 3377777777665554433 66677777777776654443333222
Q ss_pred CCcccccceeeccccccccc-----cc--ccCccccCCcccEEeeccCccccC----CCCCCCCCeEEEeccCcch----
Q 001145 800 GRPFQSLQELSLIDFPSLEF-----WW--SMNTKEEFPSLVKLFINKCERLKN----MPWFPSLQHLEFRNCNEMI---- 864 (1141)
Q Consensus 800 ~~~f~~L~~L~l~~l~~l~~-----~~--~~~~~~~~p~L~~L~i~~c~~L~~----lp~l~~L~~L~l~~~~~~~---- 864 (1141)
.+++|+.|.+.+...... .. .......+++|+.|++++|.--.. +..+++|+.|++++|....
T Consensus 294 --~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 294 --GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp --TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred --CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence 355666666653211100 00 001223567788888877753221 2336778888887765211
Q ss_pred hccccc--ccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccc-cccCCCCccCeeecccccccccccccc
Q 001145 865 MKSATN--FSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSIS-SKLGCLVALKSLTIRWCQELIALPQEI 941 (1141)
Q Consensus 865 ~~~~~~--~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~l 941 (1141)
...+.. .+.++.|.+.++... .+.+..+..+++|+.|++++|.....++ ..+..+++|++|++++|.+....+..+
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 450 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT
T ss_pred hhhhcccccCcCceEECCCCCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh
Confidence 111111 235677777665432 2334668889999999999998776666 568899999999999999887777889
Q ss_pred cCCCCCCEEeEccCCCC--ccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccC--------c
Q 001145 942 QNLSLLESLEISECHSL--TVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLP--------E 1011 (1141)
Q Consensus 942 ~~l~~L~~L~Ls~~~~l--~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~--------~ 1011 (1141)
..+++|+.|++++|.+. +.+|..+..+++|+.|++++|......+..+.++++|+.|++++|.+....+ .
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcch
Confidence 99999999999999864 5677888999999999999988776666678999999999999998875422 2
Q ss_pred CccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCC-CCCC
Q 001145 1012 NFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQ-HLTT 1090 (1141)
Q Consensus 1012 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~-~l~~ 1090 (1141)
.+.++++|+.|++++|.+....+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+.+..|..+. .+++
T Consensus 531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence 378899999999999998744445689999999999999987655556678999999999999988777666565 6889
Q ss_pred cceEeccCCcchHHhhcc-CCCCCccc
Q 001145 1091 LQHLSIRECPRLESRCKK-YVGEDWLK 1116 (1141)
Q Consensus 1091 L~~L~l~~c~~L~~~~~~-~~~~~~~~ 1116 (1141)
|+.|++++||- ...|.. ..-..|.+
T Consensus 611 L~~l~l~~N~~-~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 611 LTELDMRFNPF-DCTCESIAWFVNWIN 636 (680)
T ss_dssp CSEEECTTCCC-CBCCCCCSSEECCSS
T ss_pred cCEEEccCCCc-ccCCccHHHHHHHHH
Confidence 99999999973 334543 33345543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-39 Score=395.21 Aligned_cols=518 Identities=17% Similarity=0.103 Sum_probs=361.5
Q ss_pred CCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccc-cccccccccCceEecCCCccccc-c
Q 001145 503 DLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISLRYLNMSNTLIERL-P 580 (1141)
Q Consensus 503 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~l-p 580 (1141)
.+..+|..+. +.+++|++ +.+.+..+.+..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |
T Consensus 22 ~l~~ip~~~~--~~l~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 22 KLSKVPDDIP--SSTKNIDL--SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp CCSSCCTTSC--TTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred CcccCCCCCC--CCcCEEEC--CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence 3445565443 67888887 66777777777788899999999999988887 45788899999999999988887 7
Q ss_pred hhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCccccc-ccCcccCCCCCCCccCceEeccccCCCccccCCC
Q 001145 581 ESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLS-QFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSL 659 (1141)
Q Consensus 581 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L 659 (1141)
..|+++++|++|++++|......|..++++++|++|++++|.... .+|..++++++|++|++...... . +
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~------~---~ 168 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ------T---I 168 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC------E---E
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce------e---c
Confidence 888999999999999887444444778889999999998884333 46778888888887754211000 0 0
Q ss_pred CCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCc-CccEEEecccCC
Q 001145 660 PLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQ-NLKRLSVEGYSG 738 (1141)
Q Consensus 660 ~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 738 (1141)
. . ..+..+..++ .+..|++++|..
T Consensus 169 ~--------------~-----------------------------------------~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 169 T--------------V-----------------------------------------NDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp C--------------T-----------------------------------------TTTHHHHHCTTCCCEEECTTCCC
T ss_pred C--------------h-----------------------------------------hhhhhhhccccccceeeccCCCc
Confidence 0 0 0000011111 133555555555
Q ss_pred CCCCcccCCCCCCCccEEEEeccCCCC-CCCC-CCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccce-----eec
Q 001145 739 DRFPTWIGFPGLPNLTNIVLINCKRCE-NLPA-LGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQE-----LSL 811 (1141)
Q Consensus 739 ~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~-----L~l 811 (1141)
..+|.... ...+|+.|++++|.... ..+. ++.++.|+.+.+.......... ........+..+.. +.+
T Consensus 194 ~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 194 DFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---LEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp CEECTTTT--TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---CSCCCGGGGTTGGGSEEEEEEE
T ss_pred ceeCcccc--cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc---ccccChHHhhhhhhccHhheec
Confidence 55554432 22366666666665432 1222 4555555555553211100000 00000012222222 222
Q ss_pred ccccccccccccCccccCCcccEEeeccCcc--ccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhh
Q 001145 812 IDFPSLEFWWSMNTKEEFPSLVKLFINKCER--LKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIF 889 (1141)
Q Consensus 812 ~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~--L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 889 (1141)
.....+..... ....+++|+.|++.++.. +..++.+++|+.|++++|.......+ .++.|+.|.+.++......
T Consensus 269 ~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 269 TYTNDFSDDIV--KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CCCTTCCGGGG--SCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC-
T ss_pred ccccccccccc--ccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch-
Confidence 22222222111 134566777777776642 12333356777777777776444444 6677777777766433222
Q ss_pred hhhhcCCCCccEEEEecCCCccc--cccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcccc-ccCC
Q 001145 890 ERLLENNPCLTSLTISSCPNLRS--ISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLP-EGIE 966 (1141)
Q Consensus 890 ~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~ 966 (1141)
.+..+++|++|++++|..... ++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+ ..+.
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 467899999999999875443 3667889999999999999955 466789999999999999999877766 5788
Q ss_pred CCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCc-ccCcCccccCCcceEEecCCCCcccccccCCCCCCcCe
Q 001145 967 GLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLA-FLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQS 1045 (1141)
Q Consensus 967 ~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1045 (1141)
.+++|++|++++|......|..+..+++|+.|++++|.+.. ..|..+..+++|++|++++|.+.+..|..+.++++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 99999999999999888888889999999999999999887 47888999999999999999998888888999999999
Q ss_pred EeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCC-CcceEeccCCcc
Q 001145 1046 LEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLT-TLQHLSIRECPR 1101 (1141)
Q Consensus 1046 L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~-~L~~L~l~~c~~ 1101 (1141)
|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+..++ +|+.|++++||-
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 999999988888999999999999999999866 7787788887 699999999863
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-38 Score=389.32 Aligned_cols=518 Identities=16% Similarity=0.138 Sum_probs=341.2
Q ss_pred CCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccc-cccccccccCc
Q 001145 489 HLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISLR 567 (1141)
Q Consensus 489 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~ 567 (1141)
.+..++++.+..+......+..+..+++|++|++ +.+.+..+.+..|.++++|++|+|++|.++.+ |..|+++++|+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEEC--CCCccceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 4566777777776444444667888888888887 66666666677788888888888888888766 56788888888
Q ss_pred eEecCCCccccc-chhhhcCCCCcEEecCCCCCCc-ccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEe
Q 001145 568 YLNMSNTLIERL-PESICDLVYLQVLNLSDCHDLI-ELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIV 645 (1141)
Q Consensus 568 ~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 645 (1141)
+|++++|.++.+ |..++++++|++|++++|.... ..|. +..+++|++|++++|......|..++.+++|+.+.+...
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 888888888877 5778888888888888876443 2244 444888888888887443334555777777774322111
Q ss_pred ccccCCCccccCCCCCC-CeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCC
Q 001145 646 GTEISQGLKQLHSLPLA-GELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQP 724 (1141)
Q Consensus 646 ~~~~~~~l~~L~~L~l~-~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 724 (1141)
+.. +..+..-... ..+..-.+.... .....+..+.++....+........ .........+..+.+
T Consensus 188 ~n~----l~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~l~~l~~~~~~~~------~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 188 GND----IAGIEPGAFDSAVFQSLNFGGTQ----NLLVIFKGLKNSTIQSLWLGTFEDM------DDEDISPAVFEGLCE 253 (606)
T ss_dssp TCC----CCEECTTTTTTCEEEEEECTTCS----CHHHHHHHTTTCEEEEEECCCCTTS------CCCCCCGGGGGGGGG
T ss_pred CCc----cCccChhHhhhccccccccCCch----hHHHHhhhccccchhheechhhccc------cccccChhHhchhhc
Confidence 110 0000000000 001000000000 0111122222333333322211100 000011111222222
Q ss_pred CcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCccc
Q 001145 725 HQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQ 804 (1141)
Q Consensus 725 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~ 804 (1141)
. +|+.|++.++....++... +..+++|+.|++++|.+....+.++.+++|++|++.+|......+..
T Consensus 254 ~-~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~----------- 320 (606)
T 3t6q_A 254 M-SVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS----------- 320 (606)
T ss_dssp S-EEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-----------
T ss_pred C-ceeEEEeecCccCccCHHH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-----------
Confidence 1 5666666666666555432 12566666666666655533233666666666666665422111100
Q ss_pred ccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCC
Q 001145 805 SLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTG 884 (1141)
Q Consensus 805 ~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~ 884 (1141)
...+ ++|+.|++++|.....
T Consensus 321 ---------------------~~~l--------------------~~L~~L~l~~n~~~~~------------------- 340 (606)
T 3t6q_A 321 ---------------------ASNF--------------------PSLTHLSIKGNTKRLE------------------- 340 (606)
T ss_dssp ---------------------GGGC--------------------TTCSEEECCSCSSCCB-------------------
T ss_pred ---------------------hhcc--------------------CcCCEEECCCCCcccc-------------------
Confidence 0123 3444444444331100
Q ss_pred cchhhhhhhcCCCCccEEEEecCCCcccc--ccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcccc
Q 001145 885 QLVIFERLLENNPCLTSLTISSCPNLRSI--SSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLP 962 (1141)
Q Consensus 885 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~ 962 (1141)
+....+..+++|++|++++|...... +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+
T Consensus 341 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 341 ---LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp ---CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ---cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 01223667888999999988765544 5668889999999999999887778888999999999999998776655
Q ss_pred c-cCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcc---cCcCccccCCcceEEecCCCCcccccccCC
Q 001145 963 E-GIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAF---LPENFRNLTMLKSLCILSCPELASLPDELQ 1038 (1141)
Q Consensus 963 ~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 1038 (1141)
. .+..+++|++|++++|......|..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..|..+.
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc
Confidence 4 478899999999999888777788889999999999999988652 235688899999999999999888888899
Q ss_pred CCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1039 HVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1039 ~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
.+++|+.|++++|.+.+..|..+..+++| .|++++|.+.+..|..+..+++|+.|++++||
T Consensus 498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 99999999999999888888999999999 99999999988888888889999999999997
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-37 Score=384.17 Aligned_cols=541 Identities=16% Similarity=0.108 Sum_probs=409.7
Q ss_pred CCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccc-cccccccccCceEecCCCcccccch
Q 001145 503 DLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISLRYLNMSNTLIERLPE 581 (1141)
Q Consensus 503 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~ 581 (1141)
....+|..+. +++++|++ +.+.+..+++..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.
T Consensus 15 ~L~~ip~~~~--~~l~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 15 KLTQVPDDLP--TNITVLNL--THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCCSCSC--TTCSEEEC--CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CccccccccC--CCCcEEEC--CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 3445665543 78999998 77788888888899999999999999999887 5678999999999999999999987
Q ss_pred -hhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCC
Q 001145 582 -SICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLP 660 (1141)
Q Consensus 582 -~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~ 660 (1141)
.|+++++|++|++++|......|..++++++|++|++++|......|..++++++|++|++.... +.
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---------l~--- 158 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK---------IQ--- 158 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC---------CC---
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc---------cc---
Confidence 59999999999999987544445779999999999999996555566778899999988552211 00
Q ss_pred CCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCC
Q 001145 661 LAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDR 740 (1141)
Q Consensus 661 l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 740 (1141)
..... .-....+++|+.|+++++.... .....+..+.+|+.|.+.++....
T Consensus 159 --------------~~~~~-~~~~~~~~~L~~L~L~~n~l~~--------------~~~~~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 159 --------------ALKSE-ELDIFANSSLKKLELSSNQIKE--------------FSPGCFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp --------------CBCHH-HHGGGTTCEESEEECTTCCCCC--------------BCTTGGGGSSEECEEECTTCCCHH
T ss_pred --------------ccCHH-HhhccccccccEEECCCCcccc--------------cChhhhhhhhhhhhhhccccccCh
Confidence 00000 0112245688888887553221 123345566788888887765321
Q ss_pred -----CCcccCCCCCCCccEEEEeccCCCCCCCC-CCCCCC--cceeeecCCCCceEeCCcccCCCCCCcccccceeecc
Q 001145 741 -----FPTWIGFPGLPNLTNIVLINCKRCENLPA-LGQLPF--LRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLI 812 (1141)
Q Consensus 741 -----~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~ 812 (1141)
++..+ ..++|+.|++++|.+....+. ++.++. |+.|++++|......+..+. .+++|+.|.+.
T Consensus 210 ~~~~~~~~~l---~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~ 280 (680)
T 1ziw_A 210 SLTEKLCLEL---ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA------WLPQLEYFFLE 280 (680)
T ss_dssp HHHHHHHHHH---TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT------TCTTCCEEECC
T ss_pred hhHHHHHHHh---hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc------CcccccEeeCC
Confidence 11111 247899999999987765554 666654 99999999875544333332 57788888887
Q ss_pred cccccccccccCccccCCcccEEeeccCccc-----------c--CCCCCCCCCeEEEeccCcchh--cccccccceeee
Q 001145 813 DFPSLEFWWSMNTKEEFPSLVKLFINKCERL-----------K--NMPWFPSLQHLEFRNCNEMIM--KSATNFSTLLTL 877 (1141)
Q Consensus 813 ~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L-----------~--~lp~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L 877 (1141)
+..-... .......+++|+.|++.++..- . .+..+++|+.|++++|..... ..+..++.|+.|
T Consensus 281 ~n~l~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 281 YNNIQHL--FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp SCCBSEE--CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred CCccCcc--ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 6532221 1223457889999999875421 1 233478999999999875433 346678889999
Q ss_pred eecCcCCcch-hhhhhhc--CCCCccEEEEecCCCccccccccCCCCccCeeeccccccccccc-ccccCCCCCCEEeEc
Q 001145 878 LIDGFTGQLV-IFERLLE--NNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALP-QEIQNLSLLESLEIS 953 (1141)
Q Consensus 878 ~l~~~~~~~~-~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~Ls 953 (1141)
.+.++..... +....+. ..++|+.|++++|......|..+..+++|+.|++++|.+.+.+| ..+..+++|++|+++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 9887542221 1112222 23689999999998877778889999999999999999887665 578999999999999
Q ss_pred cCCCCccccccCCCCCCcCEEEEccCCCC--CCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcc
Q 001145 954 ECHSLTVLPEGIEGLTSLRSLSIENCENL--AYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELA 1031 (1141)
Q Consensus 954 ~~~~l~~~~~~~~~l~~L~~L~L~~~~~l--~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 1031 (1141)
+|++....+..+..+++|+.|++++|... ..+|..+..+++|+.|++++|.+....+..+.++++|++|++++|.+..
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 99977767778889999999999998764 5678889999999999999999988888889999999999999999865
Q ss_pred cc----c----ccCCCCCCcCeEeeccCCCCcccC-cCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1032 SL----P----DELQHVTTLQSLEIHSCPAFKDLP-EWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1032 ~~----~----~~l~~l~~L~~L~l~~n~~~~~lp-~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
.. | ..+.++++|+.|++++|.+. .+| ..|..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 32 1 23788999999999999876 555 568999999999999998886666667899999999999993
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-36 Score=369.23 Aligned_cols=250 Identities=19% Similarity=0.167 Sum_probs=203.1
Q ss_pred CCCCCeEEEeccCcchh-cccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccc-cCCCCccCee
Q 001145 849 FPSLQHLEFRNCNEMIM-KSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSK-LGCLVALKSL 926 (1141)
Q Consensus 849 l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L 926 (1141)
+++|+.|++++|..... ..+..+++|+.|.+.++... ...+..+..+++|++|++++|.....++.. +..+++|++|
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 44555555555543221 12334455555555543322 122455788999999999999877666554 8899999999
Q ss_pred ecccccccccc--cccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccc-ccCCCCCccEEeecCC
Q 001145 927 TIRWCQELIAL--PQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPR-GLGHLIALEHLTIMYC 1003 (1141)
Q Consensus 927 ~L~~~~~~~~l--~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~ 1003 (1141)
++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|......+. .+..+++|+.|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 99999987655 66789999999999999998877788899999999999999887766554 4889999999999999
Q ss_pred CCCcccCcCccccCCcceEEecCCCCccc---ccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1004 PSLAFLPENFRNLTMLKSLCILSCPELAS---LPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1004 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
.+....|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 99888888999999999999999998762 235688899999999999998888889999999999999999999999
Q ss_pred cCCCCCCCCCcceEeccCCc
Q 001145 1081 LPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1081 lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
.|..+..+++| .|++++|.
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSC
T ss_pred ChhHhCccccc-EEECcCCc
Confidence 99999999999 99999994
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-36 Score=367.70 Aligned_cols=519 Identities=16% Similarity=0.114 Sum_probs=371.2
Q ss_pred CCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccc-cccccccccCc
Q 001145 489 HLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISLR 567 (1141)
Q Consensus 489 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~ 567 (1141)
.+..++++.+..+......+..+.++++|++|++ +.+.+..+.+..|.++++|++|+|++|.++.+ |..|+++++|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL--SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeC--CCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 5577889988877544444568999999999998 67778777788899999999999999999988 78999999999
Q ss_pred eEecCCCcccccc-hhhhcCCCCcEEecCCCCCCc-ccCccccCCCCCcEEEecCcccccccCcccCCCCCCCc----cC
Q 001145 568 YLNMSNTLIERLP-ESICDLVYLQVLNLSDCHDLI-ELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQT----LP 641 (1141)
Q Consensus 568 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~----L~ 641 (1141)
+|++++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+. |+
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 9999999999887 789999999999999987544 68999999999999999999554445666777777763 33
Q ss_pred ceEeccccCCCccccCCCCCCC-eEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhc
Q 001145 642 VFIVGTEISQGLKQLHSLPLAG-ELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLD 720 (1141)
Q Consensus 642 ~~~~~~~~~~~l~~L~~L~l~~-~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1141)
+... .+..+..-.... .+..-.+..-..........+.+++.|+.+.+.+......... .......+.
T Consensus 188 l~~n------~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l-----~~~~~~~~~ 256 (606)
T 3vq2_A 188 MSLN------PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL-----EIFEPSIME 256 (606)
T ss_dssp CTTC------CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC-----SCCCGGGGT
T ss_pred ccCC------CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc-----cccChHHhh
Confidence 3111 111111111110 2222222222222345556678888999998887653221000 000111222
Q ss_pred ccCCCcCccEEEec-ccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCC
Q 001145 721 SLQPHQNLKRLSVE-GYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGS 799 (1141)
Q Consensus 721 ~l~~~~~L~~L~l~-~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 799 (1141)
.+... .++.+.+. .+........ +..+++|+.|++.+|.+ ..++.+..+++|+.|++.+|.. ..++ .+
T Consensus 257 ~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~----- 325 (606)
T 3vq2_A 257 GLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP-TL----- 325 (606)
T ss_dssp TGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-CC-----
T ss_pred hhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-cC-----
Confidence 22222 34455552 2222221111 22566777777777765 3344666677777777776653 2222 00
Q ss_pred CCcccccceeecccccccccccccCccccCCcccEEeeccCccccCC--CCCCCCCeEEEeccCcchhcccccccceeee
Q 001145 800 GRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNM--PWFPSLQHLEFRNCNEMIMKSATNFSTLLTL 877 (1141)
Q Consensus 800 ~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~l--p~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 877 (1141)
.+++|+.|++.+|..+..+ ..+++|+.|++++|......
T Consensus 326 ----------------------------~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~----------- 366 (606)
T 3vq2_A 326 ----------------------------DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG----------- 366 (606)
T ss_dssp ----------------------------CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEE-----------
T ss_pred ----------------------------CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCc-----------
Confidence 1233334444433322222 12556666666665422110
Q ss_pred eecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeeccccccccccc-ccccCCCCCCEEeEccCC
Q 001145 878 LIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALP-QEIQNLSLLESLEISECH 956 (1141)
Q Consensus 878 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~Ls~~~ 956 (1141)
..+..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.
T Consensus 367 ----------~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 367 ----------CCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp ----------ECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred ----------chhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 012346788999999999987 55677788999999999999999888776 578999999999999999
Q ss_pred CCccccccCCCCCCcCEEEEccCCCCC-CcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccc
Q 001145 957 SLTVLPEGIEGLTSLRSLSIENCENLA-YIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPD 1035 (1141)
Q Consensus 957 ~l~~~~~~~~~l~~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 1035 (1141)
+.+..|..+.++++|++|++++|.... .+|..++.+++|+.|++++|.+....|..+..+++|++|++++|++.+..|.
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 888888889999999999999988776 3687899999999999999999988889999999999999999999888899
Q ss_pred cCCCCCCcCeEeeccCCCCcccCcCCCCCC-CcCEEeeccCCCccccC
Q 001145 1036 ELQHVTTLQSLEIHSCPAFKDLPEWIGNLS-SLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1036 ~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~-~L~~L~l~~n~~~~~lp 1082 (1141)
.+.++++|+.|++++|.+. .+|..+..++ +|+.|++++|++...-+
T Consensus 516 ~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999999999855 7888788887 69999999999875433
No 10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.5e-36 Score=357.89 Aligned_cols=259 Identities=20% Similarity=0.208 Sum_probs=209.7
Q ss_pred cccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccce-EEEEEeCcchhH--------
Q 001145 163 VVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFEL-KIWVCVNEDFNS-------- 233 (1141)
Q Consensus 163 ~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~-------- 233 (1141)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4999999999999998641 3579999999999999999999998788899997 999999865321
Q ss_pred -----------------------------HHHHHh---cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc
Q 001145 234 -----------------------------QLRRLL---RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS 281 (1141)
Q Consensus 234 -----------------------------~l~~~l---~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~ 281 (1141)
.+++.+ .+||+||||||||+ ...|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 123333 57999999999996 4566653 2 68999999999
Q ss_pred hHHHHhhCCCCceeCC------CCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccC-Chh
Q 001145 282 AKVATIVGTIPPYYLK------GLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKR-EEG 354 (1141)
Q Consensus 282 ~~v~~~~~~~~~~~l~------~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~~~ 354 (1141)
+.++..+.....+.++ +|+++|||+||++.. +.. ..++..+| |+|+||||+++|+.|+.+. ..+
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 9988655443456666 999999999999983 322 23344444 9999999999999999874 567
Q ss_pred hHHHhhcccccccccCccchhHHHHhhccCCcchh-hhhhccccccCCCceechHHHHHHHHHcCCcccCcccccHHHHH
Q 001145 355 DWLYVQESDLWNACEGENRILPALRLSYSHLPSHL-KCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDIA 433 (1141)
Q Consensus 355 ~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~ 433 (1141)
+|... ....+..+|.+||+.||++. |.||+|||+||+++.|.++.++.+|+++| ++.+
T Consensus 346 eW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedA 404 (1221)
T 1vt4_I 346 NWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDV 404 (1221)
T ss_dssp HHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHH
T ss_pred HHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHH
Confidence 78653 13458999999999999999 99999999999999999999999999887 1347
Q ss_pred HHHHHHHhhccccccccCCCCCCeecccchhHHHHHHH
Q 001145 434 NDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDLAQ 471 (1141)
Q Consensus 434 ~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~ 471 (1141)
+.++++|+++||++.. +....|+|||++++++.
T Consensus 405 e~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 8899999999999873 12245899999999663
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.9e-35 Score=354.41 Aligned_cols=468 Identities=16% Similarity=0.120 Sum_probs=302.0
Q ss_pred CCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCcccc-ccccccccCceEecCCCcccccchh
Q 001145 504 LQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLH-SSISCLISLRYLNMSNTLIERLPES 582 (1141)
Q Consensus 504 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~ 582 (1141)
+..+|..+. +.+++|++ +.+.+....+..|.++++|++|+|++|.++.++ ..|+++++|++|+|++|.+..+|..
T Consensus 17 l~~ip~~~~--~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDL--SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp CSSCCSCCC--TTCCEEEC--CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred cccccccCC--CCccEEEC--cCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 334444332 56777776 555555555566777777777777777777664 4677777777777777777766554
Q ss_pred -hhcCCCCcEEecCCCCCCc-ccCccccCCCCCcEEEecCcccccccC-cccCCCCCCCccCceEeccccCCCccccCCC
Q 001145 583 -ICDLVYLQVLNLSDCHDLI-ELPKRLASIFQLRHLMIYGCCRLSQFP-DHIGRLIQLQTLPVFIVGTEISQGLKQLHSL 659 (1141)
Q Consensus 583 -i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L 659 (1141)
++++++|++|++++|.... ..|..++++++|++|++++|..+..+| ..++.+++|++|
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L------------------- 153 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL------------------- 153 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-------------------
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee-------------------
Confidence 7777777777777765332 345567777777777777764344444 235555555444
Q ss_pred CCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCC
Q 001145 660 PLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGD 739 (1141)
Q Consensus 660 ~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 739 (1141)
+++.+... ...+..+..+++|+.|++.++...
T Consensus 154 ----------------------------------~L~~n~l~--------------~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 154 ----------------------------------EIKALSLR--------------NYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp ----------------------------------EEEETTCC--------------EECTTTTTTCSEEEEEEEECSBST
T ss_pred ----------------------------------eccCCccc--------------ccChhhhhccccCceEecccCccc
Confidence 44332211 012233445555666666665555
Q ss_pred CCCcccCCCCCCCccEEEEeccCCCCC----CCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeeccccc
Q 001145 740 RFPTWIGFPGLPNLTNIVLINCKRCEN----LPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFP 815 (1141)
Q Consensus 740 ~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~ 815 (1141)
.+|.++. ..+++|+.|++++|.+... .+....+++|+.|++.+|.........+..
T Consensus 186 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------------------- 245 (549)
T 2z81_A 186 FLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK------------------- 245 (549)
T ss_dssp THHHHHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG-------------------
T ss_pred ccchhhH-hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH-------------------
Confidence 5554431 1356677777776665442 222445667777777665422111110000
Q ss_pred ccccccccCccccCCcccEEeeccCcc----------ccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCc
Q 001145 816 SLEFWWSMNTKEEFPSLVKLFINKCER----------LKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQ 885 (1141)
Q Consensus 816 ~l~~~~~~~~~~~~p~L~~L~i~~c~~----------L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 885 (1141)
....++.|+.+.+.+|.. ...+..+++|+.|.+.++..........
T Consensus 246 ---------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~--------------- 301 (549)
T 2z81_A 246 ---------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD--------------- 301 (549)
T ss_dssp ---------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC---------------
T ss_pred ---------Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc---------------
Confidence 001223333333333321 1123345677777777664321111000
Q ss_pred chhhhhhhcCCCCccEEEEecCCCcccccccc-CCCCccCeeeccccccccccc---ccccCCCCCCEEeEccCCCCccc
Q 001145 886 LVIFERLLENNPCLTSLTISSCPNLRSISSKL-GCLVALKSLTIRWCQELIALP---QEIQNLSLLESLEISECHSLTVL 961 (1141)
Q Consensus 886 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~l~---~~l~~l~~L~~L~Ls~~~~l~~~ 961 (1141)
.+..+...++|+.|++++|. +..+|..+ ..+++|+.|++++|.+.+..| ..++.+++|++|++++|.+....
T Consensus 302 ---l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 377 (549)
T 2z81_A 302 ---LSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377 (549)
T ss_dssp ---CCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred ---chhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence 01123345789999999986 55677665 578999999999999877654 33778999999999999876533
Q ss_pred c--ccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCC
Q 001145 962 P--EGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQH 1039 (1141)
Q Consensus 962 ~--~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 1039 (1141)
+ ..+..+++|++|++++|... .+|..+..+++|+.|++++|.+.. +|..+ .++|+.|++++|.+.+. ...
T Consensus 378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~ 449 (549)
T 2z81_A 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLF 449 (549)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCC
T ss_pred cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----ccc
Confidence 2 34778999999999997655 678888899999999999998763 33332 36899999999988653 257
Q ss_pred CCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1040 VTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1040 l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+++|+.|++++|.+. .+|. ...+++|+.|++++|.+.+..|..+..+++|+.|++++||
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 889999999999865 7776 4678999999999999988888888999999999999987
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=350.94 Aligned_cols=496 Identities=18% Similarity=0.135 Sum_probs=294.8
Q ss_pred CCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCcccc-ccccccccCc
Q 001145 489 HLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLH-SSISCLISLR 567 (1141)
Q Consensus 489 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~ 567 (1141)
.+..++++.+..+......+..+..+++|++|++ +.+.+..+.+..|.++++|++|+|++|.++.+| ..|+++++|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEEC--CCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 4567888888777444444567889999999998 666777777778999999999999999998876 6889999999
Q ss_pred eEecCCCcccccch-hhhcCCCCcEEecCCCCCCc-ccCccccCCCCCcEEEecCcccccccCcccCCCCCC----CccC
Q 001145 568 YLNMSNTLIERLPE-SICDLVYLQVLNLSDCHDLI-ELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQL----QTLP 641 (1141)
Q Consensus 568 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L----~~L~ 641 (1141)
+|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++| +.|+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 99999999998875 68999999999999987444 478899999999999999885444445567777777 3333
Q ss_pred ceEeccccCCCccccCCCCCCC-eEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhc
Q 001145 642 VFIVGTEISQGLKQLHSLPLAG-ELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLD 720 (1141)
Q Consensus 642 ~~~~~~~~~~~l~~L~~L~l~~-~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1141)
+... .+..+..-.+.. .+..-.+.............+..++.++.+.+.+........ ........+.
T Consensus 184 l~~n------~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~-----l~~~~~~~~~ 252 (570)
T 2z63_A 184 LSLN------PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN-----LEKFDKSALE 252 (570)
T ss_dssp CTTC------CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS-----CEECCTTTTG
T ss_pred cCCC------CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchh-----hhhcchhhhc
Confidence 2111 111110000000 111111111111223344455667777777766543221000 0000011112
Q ss_pred ccCCCcCccEEEecccC--CCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCC
Q 001145 721 SLQPHQNLKRLSVEGYS--GDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRG 798 (1141)
Q Consensus 721 ~l~~~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 798 (1141)
.+..+ .++.+.+.++. ....|.++. .+++|+.|++++|.+....+.+..+ +|+.|++.+|... .++.
T Consensus 253 ~l~~l-~l~~l~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~------ 321 (570)
T 2z63_A 253 GLCNL-TIEEFRLAYLDYYLDDIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT------ 321 (570)
T ss_dssp GGGGS-EEEEEEEEETTEEESCSTTTTG--GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB------
T ss_pred ccccc-chhhhhhhcchhhhhhchhhhc--CcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc------
Confidence 22221 35566666542 233444443 6789999999998766433336677 8899998876522 1110
Q ss_pred CCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeee
Q 001145 799 SGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLL 878 (1141)
Q Consensus 799 ~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 878 (1141)
..++ +|+.|++.+|.......
T Consensus 322 ----------------------------~~l~--------------------~L~~L~l~~n~~~~~~~----------- 342 (570)
T 2z63_A 322 ----------------------------LKLK--------------------SLKRLTFTSNKGGNAFS----------- 342 (570)
T ss_dssp ----------------------------CBCS--------------------SCCEEEEESCBSCCBCC-----------
T ss_pred ----------------------------cccc--------------------ccCEEeCcCCccccccc-----------
Confidence 0122 23333333332110000
Q ss_pred ecCcCCcchhhhhhhcCCCCccEEEEecCCCcccc--ccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCC
Q 001145 879 IDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSI--SSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECH 956 (1141)
Q Consensus 879 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~ 956 (1141)
...+++|++|++++|...... +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.
T Consensus 343 --------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 343 --------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp --------------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSE
T ss_pred --------------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCc
Confidence 133456666666665433221 3445566666666666666544333 36666666666666666
Q ss_pred CCcccc-ccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCC-cccCcCccccCCcceEEecCCCCccccc
Q 001145 957 SLTVLP-EGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSL-AFLPENFRNLTMLKSLCILSCPELASLP 1034 (1141)
Q Consensus 957 ~l~~~~-~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 1034 (1141)
+....+ ..+..+++|++|++++|......|..+..+++|+.|++++|.+. ..+|..+..+++|++|++++|.+.+..|
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 544433 24556666666666666655555556666666666666666654 3455566666666666666666655556
Q ss_pred ccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccC
Q 001145 1035 DELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1035 ~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp 1082 (1141)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++....|
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 666666666666666666555444556666666666666666554433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=355.16 Aligned_cols=483 Identities=19% Similarity=0.168 Sum_probs=344.7
Q ss_pred CCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCcccc-ccccccccCceEecCCCcccccc-h
Q 001145 504 LQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLH-SSISCLISLRYLNMSNTLIERLP-E 581 (1141)
Q Consensus 504 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp-~ 581 (1141)
...+|..+ .+.+++|++ +.+.+..+.+..|.++++|++|+|++|.++.++ ..|+++++|++|+|++|.++.+| .
T Consensus 19 l~~ip~~l--~~~l~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 19 FYKIPDNL--PFSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp CSSCCSSS--CSSCCEEEC--CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccCCCc--cccccEEEc--cCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 44455544 357899998 777777777778999999999999999999885 57899999999999999998886 6
Q ss_pred hhhcCCCCcEEecCCCCCCcccCc-cccCCCCCcEEEecCccccc-ccCcccCCCCCCCccCceEeccccCCCccccCCC
Q 001145 582 SICDLVYLQVLNLSDCHDLIELPK-RLASIFQLRHLMIYGCCRLS-QFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSL 659 (1141)
Q Consensus 582 ~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L 659 (1141)
.|+++++|++|++++|. +..+|. .++.+++|++|++++|.... .+|..++++++|++|++...... .
T Consensus 95 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~------~---- 163 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ------S---- 163 (570)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC------E----
T ss_pred hhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc------e----
Confidence 79999999999999986 555554 68999999999999984333 36888888888888754211000 0
Q ss_pred CCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCc----cEEEecc
Q 001145 660 PLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNL----KRLSVEG 735 (1141)
Q Consensus 660 ~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~l~~ 735 (1141)
.....+..+.+| ..|++++
T Consensus 164 ---------------------------------------------------------~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 164 ---------------------------------------------------------IYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp ---------------------------------------------------------ECGGGGHHHHTCTTCCCEEECTT
T ss_pred ---------------------------------------------------------ecHHHccchhccchhhhhcccCC
Confidence 000112222233 5666666
Q ss_pred cCCCCCCcccCCCCCCCccEEEEeccCCCC-CCCC-CCCCCCcceeeecCC-----CCceEeCCcccCCCCCCcccccce
Q 001145 736 YSGDRFPTWIGFPGLPNLTNIVLINCKRCE-NLPA-LGQLPFLRVIYMHGM-----HSVKSIDSGFYGRGSGRPFQSLQE 808 (1141)
Q Consensus 736 ~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~~-l~~l~~L~~L~L~~~-----~~~~~~~~~~~~~~~~~~f~~L~~ 808 (1141)
+....++.... ...+|+.|++++|.... .++. ++.++.++.+.+... ..+..++. ..|..+..
T Consensus 187 n~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~--------~~~~~l~~ 256 (570)
T 2z63_A 187 NPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK--------SALEGLCN 256 (570)
T ss_dssp CCCCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT--------TTTGGGGG
T ss_pred CCceecCHHHh--ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch--------hhhccccc
Confidence 66655554332 22367777777764221 1111 444555555444321 11111111 12333332
Q ss_pred ee-----cccccccccccccCccccCCcccEEeeccCccccCCCC----CCCCCeEEEeccCcchhcccccccceeeeee
Q 001145 809 LS-----LIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPW----FPSLQHLEFRNCNEMIMKSATNFSTLLTLLI 879 (1141)
Q Consensus 809 L~-----l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~----l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l 879 (1141)
+. +..++.+... .......+++|+.|++.+|. +..+|. + +|+.|++++|.....
T Consensus 257 l~l~~l~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~~l-------------- 319 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDD-IIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFGQF-------------- 319 (570)
T ss_dssp SEEEEEEEEETTEEESC-STTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCSSC--------------
T ss_pred cchhhhhhhcchhhhhh-chhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCccccc--------------
Confidence 22 2221111111 11122345667777776663 333432 3 666666666653211
Q ss_pred cCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccc--cccccCCCCCCEEeEccCCC
Q 001145 880 DGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIAL--PQEIQNLSLLESLEISECHS 957 (1141)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l--~~~l~~l~~L~~L~Ls~~~~ 957 (1141)
+ ...+++|++|++++|......+. ..+++|++|++++|.+.... |..+..+++|++|++++|.+
T Consensus 320 ----------~--~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 320 ----------P--TLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp ----------C--BCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred ----------C--cccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 1 14578999999999986665544 68999999999999976543 66788999999999999986
Q ss_pred CccccccCCCCCCcCEEEEccCCCCCCcc-cccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCc-ccccc
Q 001145 958 LTVLPEGIEGLTSLRSLSIENCENLAYIP-RGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPEL-ASLPD 1035 (1141)
Q Consensus 958 l~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~ 1035 (1141)
.+. +..+..+++|++|++++|......+ ..+..+++|+.|++++|.+....|..+..+++|++|++++|.+. +.+|.
T Consensus 386 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~ 464 (570)
T 2z63_A 386 ITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464 (570)
T ss_dssp EEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh
Confidence 654 4448889999999999988776555 46889999999999999998888999999999999999999987 47889
Q ss_pred cCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1036 ELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1036 ~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|+
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999999999999888879999999999999999999888888888999999999999986
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8e-35 Score=354.51 Aligned_cols=380 Identities=16% Similarity=0.183 Sum_probs=258.7
Q ss_pred CCcccccchhhhcCCCCcEEecCCCCCCcc-----------------cCcccc--CCCCCcEEEecCcccccccCcccCC
Q 001145 573 NTLIERLPESICDLVYLQVLNLSDCHDLIE-----------------LPKRLA--SIFQLRHLMIYGCCRLSQFPDHIGR 633 (1141)
Q Consensus 573 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-----------------lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~ 633 (1141)
+|.++.+|..++++++|++|+|++|..... +|..++ ++++|++|++++|.....+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456666777788888888888887764443 777777 7888888888877666677777777
Q ss_pred CCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchh
Q 001145 634 LIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNR 713 (1141)
Q Consensus 634 l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 713 (1141)
+++|++|++.... .
T Consensus 272 l~~L~~L~Ls~n~-----------------------------------------------------~------------- 285 (636)
T 4eco_A 272 LPEMQLINVACNR-----------------------------------------------------G------------- 285 (636)
T ss_dssp CSSCCEEECTTCT-----------------------------------------------------T-------------
T ss_pred CCCCCEEECcCCC-----------------------------------------------------C-------------
Confidence 7777666431000 0
Q ss_pred hHH-Hhhc------ccCCCcCccEEEecccCCCCCCc--ccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCC
Q 001145 714 QAE-EVLD------SLQPHQNLKRLSVEGYSGDRFPT--WIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGM 784 (1141)
Q Consensus 714 ~~~-~~~~------~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 784 (1141)
... .++. .+..+++|+.|++++|....+|. .+. .+++|+.|++++|.+...+|.++.+++|+.|++++|
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 000 1111 22344788888888888888888 665 688899999988887766777788888888888876
Q ss_pred CCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeEEEeccCcch
Q 001145 785 HSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMI 864 (1141)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~ 864 (1141)
... .++..+. .+++ +|+.|++++|....
T Consensus 364 ~l~-~lp~~l~--------------------------------~l~~-------------------~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 364 QIT-EIPANFC--------------------------------GFTE-------------------QVENLSFAHNKLKY 391 (636)
T ss_dssp EEE-ECCTTSE--------------------------------EECT-------------------TCCEEECCSSCCSS
T ss_pred ccc-cccHhhh--------------------------------hhcc-------------------cCcEEEccCCcCcc
Confidence 522 3222111 2222 03333333333110
Q ss_pred hcccccccceeeeeecCcCCcchhhhhhhcC--CCCccEEEEecCCCccccccccC-------CCCccCeeecccccccc
Q 001145 865 MKSATNFSTLLTLLIDGFTGQLVIFERLLEN--NPCLTSLTISSCPNLRSISSKLG-------CLVALKSLTIRWCQELI 935 (1141)
Q Consensus 865 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~-------~~~~L~~L~L~~~~~~~ 935 (1141)
. +..+.. +++|+.|++++|.....+|..+. .+++|+.|++++|.+..
T Consensus 392 l------------------------p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~ 447 (636)
T 4eco_A 392 I------------------------PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447 (636)
T ss_dssp C------------------------CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS
T ss_pred c------------------------chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc
Confidence 0 011222 34788999999888777777666 77789999999998774
Q ss_pred cccccccCCCCCCEEeEccCCCCccccccC-CC-------CCCcCEEEEccCCCCCCcccccC--CCCCccEEeecCCCC
Q 001145 936 ALPQEIQNLSLLESLEISECHSLTVLPEGI-EG-------LTSLRSLSIENCENLAYIPRGLG--HLIALEHLTIMYCPS 1005 (1141)
Q Consensus 936 ~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~-~~-------l~~L~~L~L~~~~~l~~l~~~~~--~l~~L~~L~l~~~~~ 1005 (1141)
..+..+..+++|++|+|++|.+. .+|... .. +++|+.|++++|... .+|..+. .+++|+.|++++|.+
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC
Confidence 33334567889999999998876 565533 22 238899999887666 6777776 888999999999888
Q ss_pred CcccCcCccccCCcceEEec------CCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1006 LAFLPENFRNLTMLKSLCIL------SCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1006 ~~~~~~~~~~l~~L~~L~L~------~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
.. +|..+..+++|+.|+++ +|.+.+.+|..+.++++|+.|++++|.+ +.+|..+. ++|+.|++++|++..
T Consensus 526 ~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 76 78888888899999884 5666777888888888888888888886 77787655 788888888887765
Q ss_pred ccCCCC--------CCCCCcceEeccCCcch
Q 001145 1080 SLPANL--------QHLTTLQHLSIRECPRL 1102 (1141)
Q Consensus 1080 ~lp~~~--------~~l~~L~~L~l~~c~~L 1102 (1141)
.-+..+ ..+...+..++.+|+.|
T Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 602 IDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp EECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred ccHHhcchhhhcccceeecCCccccCCCccc
Confidence 432221 12223345567778765
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=346.92 Aligned_cols=194 Identities=15% Similarity=0.075 Sum_probs=112.0
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccc-cccCCCCCCc
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVL-PEGIEGLTSL 971 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~-~~~~~~l~~L 971 (1141)
+..+++|+.|++++|... .+ ..+++|+.|++++|.+. .+|. ...+++.|++++|.+.... +..+..+++|
T Consensus 358 ~~~l~~L~~L~Ls~N~l~-~i----~~~~~L~~L~l~~N~l~-~l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALT-TI----HFIPSIPDIFLSGNKLV-TLPK---INLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SCSCCCCCEEEEETCCSC-CC----SSCCSCSEEEEESCCCC-CCCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hcCCCCCCEEECCCCCCC-cc----cCCCCcchhccCCCCcc-cccc---cccccceeecccCccccCchhhhhhcCCcc
Confidence 455666666666666432 22 22556666666666644 3332 2355666666666644321 1123456667
Q ss_pred CEEEEccCCCCCCccc-ccCCCCCccEEeecCCCCCc-----ccCcCccccCCcceEEecCCCCcccccccCCCCCCcCe
Q 001145 972 RSLSIENCENLAYIPR-GLGHLIALEHLTIMYCPSLA-----FLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQS 1045 (1141)
Q Consensus 972 ~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1045 (1141)
+.|++++|......+. .+..+++|+.|++++|.+.. ..+..+.++++|+.|+|++|.+.+..|..+.++++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 7777766655432221 23456667777777666542 22344566677777777777666555666666777777
Q ss_pred EeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1046 LEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1046 L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
|+|++|.+.+..|..+. ++|+.|++++|.+.+..|..+ ++|+.|++++||
T Consensus 509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np 558 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNK 558 (844)
T ss_dssp EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEEC
T ss_pred eECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCC
Confidence 77777665443333333 667777777777666666543 356677777665
No 16
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-34 Score=383.84 Aligned_cols=285 Identities=22% Similarity=0.302 Sum_probs=225.4
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-cccc-ceEEEEEeCcchhH---
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-TKSF-ELKIWVCVNEDFNS--- 233 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~--- 233 (1141)
....||||++++++|.++|...+ .+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++....
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~-----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN-----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT-----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc-----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 34579999999999999997541 25789999999999999999999997543 4444 57779999874321
Q ss_pred -----------------------------HHHHHhcCc--ceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 234 -----------------------------QLRRLLRGR--RYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 234 -----------------------------~l~~~l~~k--~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
.++..+.++ |+||||||||+ ...|.. ..+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~--~~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD--PWVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC--HHHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC--HHHHHh-------hcCCCEEEEEcCCH
Confidence 344445555 99999999985 333332 36789999999999
Q ss_pred HHHHh-hCCCCceeCCC-CCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhh
Q 001145 283 KVATI-VGTIPPYYLKG-LSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQ 360 (1141)
Q Consensus 283 ~v~~~-~~~~~~~~l~~-l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~ 360 (1141)
.++.. ++....+++.+ |+++||++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l 342 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYL 342 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHH
Confidence 99854 45566899996 99999999999988432 345667899999999999999999999998766 3566554
Q ss_pred cc---ccccc-c----cCccchhHHHHhhccCCcchhhhhhccccccCCCceechHHHHHHHHHcCCcccCcccccHHHH
Q 001145 361 ES---DLWNA-C----EGENRILPALRLSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDI 432 (1141)
Q Consensus 361 ~~---~~~~~-~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 432 (1141)
+. ..+.. . .....+..++.+||+.||+++|.||+|||+||+++.|+++.++++|.++ ++.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~ 410 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEE 410 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHH
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHH
Confidence 32 11111 1 1124588999999999999999999999999999999999999999553 366
Q ss_pred HHHHHHHHhhccccccccCCCCCCeecccchhHHHHHHHHhhcCc
Q 001145 433 ANDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDLAQSVVGGE 477 (1141)
Q Consensus 433 ~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~~~e 477 (1141)
++.++++|++++|++... +++..+|+|||++|++++..+.++
T Consensus 411 ~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 889999999999998643 345567899999999999987765
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=343.96 Aligned_cols=512 Identities=14% Similarity=0.069 Sum_probs=296.7
Q ss_pred CCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCC-CCCCCCccccCCCCcccEEEccCCCCccc-cccccccccC
Q 001145 489 HLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKG-DLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISL 566 (1141)
Q Consensus 489 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L 566 (1141)
.+..++++.+..+......+..+..+++|++|++ +.+ ....+.+..|.++++|++|+|++|.++.+ |..|+++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdL--s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEE--CTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeC--CCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 5667778877776444444667778888888887 333 33334466678888888888888887766 6678888888
Q ss_pred ceEecCCCcccc-cchh--hhcCCCCcEEecCCCCCCcccC-ccccCCCCCcEEEecCcccccccCcccCCC--CCCCcc
Q 001145 567 RYLNMSNTLIER-LPES--ICDLVYLQVLNLSDCHDLIELP-KRLASIFQLRHLMIYGCCRLSQFPDHIGRL--IQLQTL 640 (1141)
Q Consensus 567 ~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l--~~L~~L 640 (1141)
++|+|++|.+.. +|.. +++|++|++|+|++|......| ..++++++|++|++++|......|..++.+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 888888887765 4544 7788888888888876444323 467788888888888775444455556655 667666
Q ss_pred CceEecccc--CCCccccCC-CC--CCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhH
Q 001145 641 PVFIVGTEI--SQGLKQLHS-LP--LAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQA 715 (1141)
Q Consensus 641 ~~~~~~~~~--~~~l~~L~~-L~--l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 715 (1141)
++....... ...+..+.. +. ....+.+..-.......... ........+..|.+........ ...+...
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~l~~~~l~~L~l~~~~~~~~-----~~~~~l~ 253 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF-SNAISKSQAFSLILAHHIMGAG-----FGFHNIK 253 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG-GGTSCSCCBSEEECCSSCCBCS-----SSCSSST
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH-HhhcCcccccceeccccccccc-----ccccccC
Confidence 543221110 000000000 00 00011111100000000000 0111122333333321100000 0000000
Q ss_pred HHhhcccCC--CcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCceEeCC
Q 001145 716 EEVLDSLQP--HQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPA-LGQLPFLRVIYMHGMHSVKSIDS 792 (1141)
Q Consensus 716 ~~~~~~l~~--~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~ 792 (1141)
......+.. .++|+.|+++++....++... +..+++|+.|+|++|.+....+. ++.+++|+.|++++|......+.
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 011111221 245666666655544443221 12455666666666655444333 55566666666655542211111
Q ss_pred cccCCCCCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCC-----CCCCCCeEEEeccCcchhcc
Q 001145 793 GFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMP-----WFPSLQHLEFRNCNEMIMKS 867 (1141)
Q Consensus 793 ~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-----~l~~L~~L~l~~~~~~~~~~ 867 (1141)
....+++|+.|+++++. +..++ .+++|+.|++++|....
T Consensus 333 --------------------------------~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 376 (844)
T 3j0a_A 333 --------------------------------NFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTT--- 376 (844)
T ss_dssp --------------------------------SCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCC---
T ss_pred --------------------------------HhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCc---
Confidence 11244555555555552 33322 25677777777665221
Q ss_pred cccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeeccccccccc-ccccccCCCC
Q 001145 868 ATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIA-LPQEIQNLSL 946 (1141)
Q Consensus 868 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-l~~~l~~l~~ 946 (1141)
+..+++|+.|++++|... .+|. ...+++.|++++|.+.+. .+..+..+++
T Consensus 377 -------------------------i~~~~~L~~L~l~~N~l~-~l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 377 -------------------------IHFIPSIPDIFLSGNKLV-TLPK---INLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp -------------------------CSSCCSCSEEEEESCCCC-CCCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred -------------------------ccCCCCcchhccCCCCcc-cccc---cccccceeecccCccccCchhhhhhcCCc
Confidence 223677888888887643 4443 245788888888886543 1223567888
Q ss_pred CCEEeEccCCCCccccc-cCCCCCCcCEEEEccCCCCC-----CcccccCCCCCccEEeecCCCCCcccCcCccccCCcc
Q 001145 947 LESLEISECHSLTVLPE-GIEGLTSLRSLSIENCENLA-----YIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLK 1020 (1141)
Q Consensus 947 L~~L~Ls~~~~l~~~~~-~~~~l~~L~~L~L~~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 1020 (1141)
|+.|+|++|.+....+. .+..+++|+.|++++|.... ..+..+.++++|+.|++++|.+....|..+..+++|+
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence 88899988886654333 34567888888888877652 2344577888899999999888877778888889999
Q ss_pred eEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1021 SLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1021 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
.|+|++|.+....+..+. ++|+.|++++|.+.+..|.. +++|+.|++++|+...
T Consensus 508 ~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 508 GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFIC 561 (844)
T ss_dssp EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCC
T ss_pred eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCccc
Confidence 999999988655455444 78999999998887776654 3578888998887764
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-33 Score=347.33 Aligned_cols=278 Identities=16% Similarity=0.148 Sum_probs=195.6
Q ss_pred ccCCCcCccEEEecccCCCCCCc--ccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCC
Q 001145 721 SLQPHQNLKRLSVEGYSGDRFPT--WIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRG 798 (1141)
Q Consensus 721 ~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 798 (1141)
.+..+++|+.|++++|.+..+|. .+. .+++|+.|+|++|.+. .+|.++.+++|+.|++++|... .++..+
T Consensus 543 ~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l---- 614 (876)
T 4ecn_A 543 DEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDF---- 614 (876)
T ss_dssp CTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTS----
T ss_pred cccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHH----
Confidence 34456688888888888888887 665 7888999999888877 6778888888888888887633 222111
Q ss_pred CCCcccccceeecccccccccccccCccccCCc-ccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeee
Q 001145 799 SGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPS-LVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTL 877 (1141)
Q Consensus 799 ~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~-L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 877 (1141)
..+++ |+.|++++|. +..+|
T Consensus 615 ----------------------------~~l~~~L~~L~Ls~N~-L~~lp------------------------------ 635 (876)
T 4ecn_A 615 ----------------------------CAFTDQVEGLGFSHNK-LKYIP------------------------------ 635 (876)
T ss_dssp ----------------------------CEECTTCCEEECCSSC-CCSCC------------------------------
T ss_pred ----------------------------hhccccCCEEECcCCC-CCcCc------------------------------
Confidence 12222 3333333332 11111
Q ss_pred eecCcCCcchhhhhhhcC--CCCccEEEEecCCCccccccc---cC--CCCccCeeeccccccccccccc-ccCCCCCCE
Q 001145 878 LIDGFTGQLVIFERLLEN--NPCLTSLTISSCPNLRSISSK---LG--CLVALKSLTIRWCQELIALPQE-IQNLSLLES 949 (1141)
Q Consensus 878 ~l~~~~~~~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~---~~--~~~~L~~L~L~~~~~~~~l~~~-l~~l~~L~~ 949 (1141)
..+.. .++|+.|++++|.....+|.. +. .+++|+.|++++|.+. .+|.. +..+++|+.
T Consensus 636 -------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 636 -------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIST 701 (876)
T ss_dssp -------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSE
T ss_pred -------------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCE
Confidence 11222 245899999998876554432 22 3458999999999877 45544 458899999
Q ss_pred EeEccCCCCccccccCCC--------CCCcCEEEEccCCCCCCcccccC--CCCCccEEeecCCCCCcccCcCccccCCc
Q 001145 950 LEISECHSLTVLPEGIEG--------LTSLRSLSIENCENLAYIPRGLG--HLIALEHLTIMYCPSLAFLPENFRNLTML 1019 (1141)
Q Consensus 950 L~Ls~~~~l~~~~~~~~~--------l~~L~~L~L~~~~~l~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 1019 (1141)
|+|++|.+. .+|..+.. +++|+.|+|++|... .+|..+. .+++|+.|++++|.+.. +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 999998866 56653322 238999999987665 6777776 88999999999988876 67788888999
Q ss_pred ceEEecC------CCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCC
Q 001145 1020 KSLCILS------CPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANL 1085 (1141)
Q Consensus 1020 ~~L~L~~------n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~ 1085 (1141)
+.|+|++ |.+.+.+|..+.++++|+.|+|++|.+ +.+|..+. ++|+.|+|++|++...-+..+
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 9999876 666677888888888888888888886 77887654 688888888888766544433
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-33 Score=334.70 Aligned_cols=465 Identities=15% Similarity=0.110 Sum_probs=327.9
Q ss_pred CCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccc-cccccccCc
Q 001145 489 HLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHS-SISCLISLR 567 (1141)
Q Consensus 489 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~ 567 (1141)
.+..++++.+..+......+..+..+++|++|++ +.+.+....+..|..+++|++|+|++|.++.+|. .|+++++|+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL--KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEEC--CCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 3467889998887544445678999999999998 7777877778889999999999999999998876 499999999
Q ss_pred eEecCCCcccc--cchhhhcCCCCcEEecCCCCCCcccC-ccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceE
Q 001145 568 YLNMSNTLIER--LPESICDLVYLQVLNLSDCHDLIELP-KRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFI 644 (1141)
Q Consensus 568 ~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 644 (1141)
+|++++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|++|++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l-- 179 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL-- 179 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE--
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec--
Confidence 99999999985 47889999999999999998677776 57999999999999999655567777777776666643
Q ss_pred eccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCC
Q 001145 645 VGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQP 724 (1141)
Q Consensus 645 ~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 724 (1141)
+++... ..... .+..
T Consensus 180 ---------------------------------------------------~~n~~~-----------~~~~~---~~~~ 194 (549)
T 2z81_A 180 ---------------------------------------------------HLSESA-----------FLLEI---FADI 194 (549)
T ss_dssp ---------------------------------------------------ECSBST-----------THHHH---HHHS
T ss_pred ---------------------------------------------------ccCccc-----------ccchh---hHhh
Confidence 211100 00000 0122
Q ss_pred CcCccEEEecccCCCCCC---cccCCCCCCCccEEEEeccCCCCCC-----CCCCCCCCcceeeecCCCCceEeCCcccC
Q 001145 725 HQNLKRLSVEGYSGDRFP---TWIGFPGLPNLTNIVLINCKRCENL-----PALGQLPFLRVIYMHGMHSVKSIDSGFYG 796 (1141)
Q Consensus 725 ~~~L~~L~l~~~~~~~~p---~~~~~~~l~~L~~L~L~~~~~~~~l-----~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 796 (1141)
+++|+.|++++|....++ .++ ...+++|+.|++.+|.+.+.. ..+..+++|+.|++.+|............
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPV-DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSS-CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred cccccEEEccCCccccccccccch-hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 455556666655544432 122 124567777777776543311 11345667777777766422110000000
Q ss_pred CCCCCcccccceeecccccccccccccCccccCCcccEEeeccCccc-----cCCC----CCCCCCeEEEeccCcchhcc
Q 001145 797 RGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERL-----KNMP----WFPSLQHLEFRNCNEMIMKS 867 (1141)
Q Consensus 797 ~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L-----~~lp----~l~~L~~L~l~~~~~~~~~~ 867 (1141)
.. ....+++|+.+.+.++..- ..++ ..++|+.|++++|....
T Consensus 274 ~~--------------------------~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~--- 324 (549)
T 2z81_A 274 SD--------------------------VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL--- 324 (549)
T ss_dssp TT--------------------------CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC---
T ss_pred hh--------------------------hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc---
Confidence 00 0012333333333333210 0111 13567778887765321
Q ss_pred cccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCcccccc---ccCCCCccCeeeccccccccccc--cccc
Q 001145 868 ATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISS---KLGCLVALKSLTIRWCQELIALP--QEIQ 942 (1141)
Q Consensus 868 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~l~--~~l~ 942 (1141)
++...+..+++|+.|++++|.....+|. .+..+++|+.|++++|.+.+..+ ..+.
T Consensus 325 --------------------ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 325 --------------------VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp --------------------CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred --------------------CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence 1122245689999999999987776643 36788999999999999765432 4588
Q ss_pred CCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceE
Q 001145 943 NLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSL 1022 (1141)
Q Consensus 943 ~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1022 (1141)
.+++|++|++++|++. .+|..+..+++|++|++++|... .+|..+ .++|+.|++++|.+... ...+++|++|
T Consensus 385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L 456 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQEL 456 (549)
T ss_dssp GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEE
T ss_pred cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEE
Confidence 8999999999999865 68888888999999999997754 444333 36899999999988753 2578999999
Q ss_pred EecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccC
Q 001145 1023 CILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1023 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp 1082 (1141)
++++|++. .+|. ...+++|+.|++++|.+.+..|..+..+++|+.|++++|++....|
T Consensus 457 ~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 457 YISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999985 6776 4578999999999999887777789999999999999999765433
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-33 Score=340.46 Aligned_cols=360 Identities=16% Similarity=0.154 Sum_probs=260.2
Q ss_pred CCCCccccccccccccCceEecCCCcccc------------------cchhhh--cCCCCcEEecCCCCCCcccCccccC
Q 001145 550 GSGIKKLHSSISCLISLRYLNMSNTLIER------------------LPESIC--DLVYLQVLNLSDCHDLIELPKRLAS 609 (1141)
Q Consensus 550 ~~~l~~lp~~i~~L~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~ 609 (1141)
+|.++.+|..++++++|++|+|++|.++. +|..++ ++++|++|++++|.....+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 45677789999999999999999999998 999998 9999999999999888899999999
Q ss_pred CCCCcEEEecCccccc--ccCcccCCC------CCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHH
Q 001145 610 IFQLRHLMIYGCCRLS--QFPDHIGRL------IQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAF 681 (1141)
Q Consensus 610 L~~L~~L~l~~~~~~~--~~p~~i~~l------~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~ 681 (1141)
+++|++|++++|..+. .+|..++++ ++|++|++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L--------------------------------------- 312 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI--------------------------------------- 312 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC---------------------------------------
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC---------------------------------------
Confidence 9999999999985244 588888765 55555533
Q ss_pred hcccCCCCCceEEEEEecCCCccccccccchhhHHHhhc--ccCCCcCccEEEecccCCC-CCCcccCCCCCCCccEEEE
Q 001145 682 ASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLD--SLQPHQNLKRLSVEGYSGD-RFPTWIGFPGLPNLTNIVL 758 (1141)
Q Consensus 682 ~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L 758 (1141)
+.+.. . .++. .+..+++|+.|++++|... .+| .+. .+++|+.|++
T Consensus 313 --------------~~n~l--------------~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L 360 (636)
T 4eco_A 313 --------------GYNNL--------------K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--SEIKLASLNL 360 (636)
T ss_dssp --------------CSSCC--------------S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--EEEEESEEEC
T ss_pred --------------CCCcC--------------C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC--CCCCCCEEEC
Confidence 21111 0 1222 4555667777777777766 666 332 5777888888
Q ss_pred eccCCCCCCCC-CCCCCC-cceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccEEe
Q 001145 759 INCKRCENLPA-LGQLPF-LRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLF 836 (1141)
Q Consensus 759 ~~~~~~~~l~~-l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~ 836 (1141)
++|.+. .+|. ++.+++ |+.|++++|... .++..+.. ..+++|+.|+
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~------------------------------~~l~~L~~L~ 408 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA------------------------------KSVSVMSAID 408 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT------------------------------TCSSCEEEEE
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh------------------------------cccCccCEEE
Confidence 777766 3443 777777 888888776532 22221100 0122333343
Q ss_pred eccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccc
Q 001145 837 INKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSK 916 (1141)
Q Consensus 837 i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 916 (1141)
+++|..-..+|. .+... ......+++|+.|++++|... .+|..
T Consensus 409 Ls~N~l~~~~p~------------------~l~~~------------------~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 451 (636)
T 4eco_A 409 FSYNEIGSVDGK------------------NFDPL------------------DPTPFKGINVSSINLSNNQIS-KFPKE 451 (636)
T ss_dssp CCSSCTTTTTTC------------------SSCTT------------------CSSCCCCCCEEEEECCSSCCC-SCCTH
T ss_pred CcCCcCCCcchh------------------hhccc------------------ccccccCCCCCEEECcCCccC-cCCHH
Confidence 333321111110 00000 000125678999999999765 56554
Q ss_pred -cCCCCccCeeeccccccccccccc-ccC-------CCCCCEEeEccCCCCccccccCC--CCCCcCEEEEccCCCCCCc
Q 001145 917 -LGCLVALKSLTIRWCQELIALPQE-IQN-------LSLLESLEISECHSLTVLPEGIE--GLTSLRSLSIENCENLAYI 985 (1141)
Q Consensus 917 -~~~~~~L~~L~L~~~~~~~~l~~~-l~~-------l~~L~~L~Ls~~~~l~~~~~~~~--~l~~L~~L~L~~~~~l~~l 985 (1141)
+..+++|+.|++++|.+. .+|.. +.. +++|+.|+|++|.+. .+|..+. .+++|+.|++++|.... +
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence 567899999999999987 55543 332 339999999999976 6887776 89999999999988776 8
Q ss_pred ccccCCCCCccEEeec------CCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCc
Q 001145 986 PRGLGHLIALEHLTIM------YCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 986 ~~~~~~l~~L~~L~l~------~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
|..+..+++|+.|+++ +|.+...+|..+..+++|++|+|++|.+ +.+|..+. ++|+.|++++|++..
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 8899999999999994 5667788999999999999999999999 78888765 899999999998764
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=325.93 Aligned_cols=446 Identities=19% Similarity=0.158 Sum_probs=298.3
Q ss_pred cEEeccccCCCCCCCCccccCCCCcccEEEccCCCCcccc-ccccccccCceEecCCCccccc-chhhhcCCCCcEEecC
Q 001145 518 RTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLH-SSISCLISLRYLNMSNTLIERL-PESICDLVYLQVLNLS 595 (1141)
Q Consensus 518 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~ 595 (1141)
+++++ +.+.+..++...+ ++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+ |..++++++|++|+++
T Consensus 3 ~~l~l--s~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDR--SKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEEC--TTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEec--CCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 45665 5555555444322 67777777777777665 4677777777777777777766 5677777777777777
Q ss_pred CCCCCcccCccccCCCCCcEEEecCccccc-ccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccC
Q 001145 596 DCHDLIELPKRLASIFQLRHLMIYGCCRLS-QFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVK 674 (1141)
Q Consensus 596 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~ 674 (1141)
+|. +..+|.. .+++|++|++++|.... .+|..++.++
T Consensus 78 ~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~--------------------------------------- 115 (520)
T 2z7x_B 78 HNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS--------------------------------------- 115 (520)
T ss_dssp SSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT---------------------------------------
T ss_pred CCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCC---------------------------------------
Confidence 765 4566665 67777777777763222 2344444444
Q ss_pred CcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCc--cEEEecccCC---CCCCcccCCCC
Q 001145 675 SGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNL--KRLSVEGYSG---DRFPTWIGFPG 749 (1141)
Q Consensus 675 ~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~ 749 (1141)
+|+.|+++.+.... ..+..+++| +.|++.++.. ...|.++. .
T Consensus 116 --------------~L~~L~L~~n~l~~-----------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~--~ 162 (520)
T 2z7x_B 116 --------------QLKFLGLSTTHLEK-----------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ--D 162 (520)
T ss_dssp --------------TCCEEEEEESSCCG-----------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT--T
T ss_pred --------------cceEEEecCcccch-----------------hhccccccceeeEEEeeccccccccccccccc--c
Confidence 44444554432210 123334455 8888888765 33344432 2
Q ss_pred CC-CccEEEEeccCCCCCCCC--CCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCcc
Q 001145 750 LP-NLTNIVLINCKRCENLPA--LGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTK 826 (1141)
Q Consensus 750 l~-~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~ 826 (1141)
+. +...+++.+|.....++. +..+++|+.|++++|.... .+.. +.. ..+..
T Consensus 163 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-------------~~~~-----------~~~--~~~~l 216 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN-------------KCSY-----------FLS--ILAKL 216 (520)
T ss_dssp CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT-------------TTHH-----------HHH--HHHGG
T ss_pred cccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc-------------ccce-----------eec--chhhh
Confidence 22 233455556655544443 5667777777776653100 0000 000 00112
Q ss_pred ccCCcccEEeeccCcccc----CCC---CCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhh-----c
Q 001145 827 EEFPSLVKLFINKCERLK----NMP---WFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLL-----E 894 (1141)
Q Consensus 827 ~~~p~L~~L~i~~c~~L~----~lp---~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-----~ 894 (1141)
..+++|+.|++.+|.--. .++ ..++|+.|++++|...... +..+ .
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------------------p~~~~~~~~~ 273 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL-----------------------DFRDFDYSGT 273 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC-----------------------CCCCCCCCSC
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc-----------------------ccchhhcccc
Confidence 356677777776653211 111 1347777777776532110 1112 6
Q ss_pred CCCCccEEEEecCCCccccc-cccCCC---CccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCC
Q 001145 895 NNPCLTSLTISSCPNLRSIS-SKLGCL---VALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTS 970 (1141)
Q Consensus 895 ~~~~L~~L~L~~~~~~~~~~-~~~~~~---~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~ 970 (1141)
.+++|+.+++++|.. .+| ..+..+ ++|+.|++++|.+.... .+..+++|++|++++|.+.+..|..+..+++
T Consensus 274 ~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 274 SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 788899999998876 555 233333 57999999999865432 1268899999999999988878888899999
Q ss_pred cCEEEEccCCCCC--CcccccCCCCCccEEeecCCCCCcccCc-CccccCCcceEEecCCCCcccccccCCCCCCcCeEe
Q 001145 971 LRSLSIENCENLA--YIPRGLGHLIALEHLTIMYCPSLAFLPE-NFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLE 1047 (1141)
Q Consensus 971 L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 1047 (1141)
|++|++++|.... .+|..+..+++|+.|++++|.+...+|. .+..+++|+.|++++|.+.+.+|..+. ++|+.|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~ 427 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence 9999999988765 5667789999999999999999874554 578899999999999999887777664 7999999
Q ss_pred eccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCC-CCCCCCcceEeccCCc
Q 001145 1048 IHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPAN-LQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1048 l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~-~~~l~~L~~L~l~~c~ 1100 (1141)
+++|.+. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++||
T Consensus 428 Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 9999865 88888889999999999999876 56665 8889999999999996
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-31 Score=330.91 Aligned_cols=515 Identities=22% Similarity=0.197 Sum_probs=319.6
Q ss_pred CCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccc-cccccccCceEecCCCcccccch
Q 001145 503 DLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHS-SISCLISLRYLNMSNTLIERLPE 581 (1141)
Q Consensus 503 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~ 581 (1141)
....+|..+. +.++.|+| +.|.+..+++..|.++++|++|+|++|.++.+|. +|.+|++|++|+|++|.++.+|.
T Consensus 42 ~l~~vP~~lp--~~~~~LdL--s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCSSCCSSSC--TTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcCccCCCCC--cCCCEEEe--eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3455665542 47899998 7788888888889999999999999999998864 68999999999999999998875
Q ss_pred -hhhcCCCCcEEecCCCCCCcccC-ccccCCCCCcEEEecCccccc-ccCcccCCCCCCCccCceEeccc--cCCCcccc
Q 001145 582 -SICDLVYLQVLNLSDCHDLIELP-KRLASIFQLRHLMIYGCCRLS-QFPDHIGRLIQLQTLPVFIVGTE--ISQGLKQL 656 (1141)
Q Consensus 582 -~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~--~~~~l~~L 656 (1141)
.|.+|++|++|++++|. +..+| ..|+++++|++|++++|.... ..|..++.+++|++|++...... ....+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 57899999999999986 45555 458999999999999884322 35667788888888755221100 00000011
Q ss_pred CCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEeccc
Q 001145 657 HSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGY 736 (1141)
Q Consensus 657 ~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 736 (1141)
..+. .....++++.+.. ..+.........+..+.+.++
T Consensus 197 ~~l~---------------------------~~~~~~~ls~n~l---------------~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 197 HQMP---------------------------LLNLSLDLSLNPM---------------NFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp HTCT---------------------------TCCCEEECTTCCC---------------CEECTTTTTTCEEEEEEEESC
T ss_pred hhhh---------------------------hhhhhhhcccCcc---------------cccCcccccchhhhhhhhhcc
Confidence 1110 0001111110000 000001111112233333332
Q ss_pred CCC--CCCcccCCCCCCCccEEEEeccCC--CCCCC-----CCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccc
Q 001145 737 SGD--RFPTWIGFPGLPNLTNIVLINCKR--CENLP-----ALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQ 807 (1141)
Q Consensus 737 ~~~--~~p~~~~~~~l~~L~~L~L~~~~~--~~~l~-----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~ 807 (1141)
... ..+..+ ..+..++...+..... ...+. .+..+..+..+.+..+.......
T Consensus 235 ~~~~~~~~~~~--~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------------- 296 (635)
T 4g8a_A 235 FDSLNVMKTCI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD---------------- 296 (635)
T ss_dssp CSSHHHHHHHH--HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE----------------
T ss_pred cccccccchhh--cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc----------------
Confidence 211 000111 1233333333221111 00000 11122222222221111000000
Q ss_pred eeecccccccccccccCccccCCcccEEeeccCcc--ccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCc
Q 001145 808 ELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCER--LKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQ 885 (1141)
Q Consensus 808 ~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~--L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 885 (1141)
........++.+..+.+.++.. +..+....+|+.|++.+|..... ....+..+..+.+......
T Consensus 297 -------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 297 -------------GIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp -------------ECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSC-CCCBCTTCCEEEEESCCSC
T ss_pred -------------chhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCc-CcccchhhhhcccccccCC
Confidence 0001111233344444433321 11222344555555555442211 1122333444444333221
Q ss_pred chhhhhhhcCCCCccEEEEecCCCcc--ccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc
Q 001145 886 LVIFERLLENNPCLTSLTISSCPNLR--SISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE 963 (1141)
Q Consensus 886 ~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~ 963 (1141)
.. .....+++|+.|++++|.... ..+..+..+.+|+.|++..|.... .+..+..+++|+.+++++|......+.
T Consensus 363 ~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 363 NA---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CB---CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred CC---cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence 11 113457889999999887543 233445678889999999888544 445678899999999998876655443
Q ss_pred -cCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCc-ccCcCccccCCcceEEecCCCCcccccccCCCCC
Q 001145 964 -GIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLA-FLPENFRNLTMLKSLCILSCPELASLPDELQHVT 1041 (1141)
Q Consensus 964 -~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 1041 (1141)
.+..+++++.++++.|......+..+..+++|+.|++++|.... ..|..+..+++|++|+|++|++.+..|..+.+++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 56788999999999988877777788899999999999997544 5678889999999999999999888888899999
Q ss_pred CcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCC-CCcceEeccCCc
Q 001145 1042 TLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHL-TTLQHLSIRECP 1100 (1141)
Q Consensus 1042 ~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l-~~L~~L~l~~c~ 1100 (1141)
+|+.|+|++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+ ++|+.|++++||
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999999998777667788999999999999999999999888887 689999999986
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=320.09 Aligned_cols=454 Identities=16% Similarity=0.093 Sum_probs=327.0
Q ss_pred EEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccc-cccccccccCceEecCC
Q 001145 495 HSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISLRYLNMSN 573 (1141)
Q Consensus 495 ~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~ 573 (1141)
++.+..+ .+..+|..+. ++++.|++ +.+.+....+..|..+++|++|+|++|.++.+ |..|+++++|++|+|++
T Consensus 4 ~l~ls~n-~l~~ip~~~~--~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 4 LVDRSKN-GLIHVPKDLS--QKTTILNI--SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp EEECTTS-CCSSCCCSCC--TTCSEEEC--CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred eEecCCC-Cccccccccc--ccccEEEC--CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 3444444 3445666554 89999998 77788888888899999999999999999987 67999999999999999
Q ss_pred CcccccchhhhcCCCCcEEecCCCCCCc-ccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCC
Q 001145 574 TLIERLPESICDLVYLQVLNLSDCHDLI-ELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQG 652 (1141)
Q Consensus 574 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~ 652 (1141)
|.++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|. +.. ..++.+++|
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L--------------- 138 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHL--------------- 138 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTS---------------
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccc---------------
Confidence 999999987 89999999999998554 578899999999999999883 222 122222222
Q ss_pred ccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCc-CccEE
Q 001145 653 LKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQ-NLKRL 731 (1141)
Q Consensus 653 l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L 731 (1141)
+|+.|+++++.... ....+..+..+. ....+
T Consensus 139 ------------------------------------~L~~L~l~~n~l~~------------~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 139 ------------------------------------NISKVLLVLGETYG------------EKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp ------------------------------------CEEEEEEEECTTTT------------SSCCTTTTTTCCEEEEEE
T ss_pred ------------------------------------eeeEEEeecccccc------------cccccccccccccceEEE
Confidence 22555555543200 001112222222 22345
Q ss_pred EecccCCCCCCcccCCCCCCCccEEEEeccC-------CCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCccc
Q 001145 732 SVEGYSGDRFPTWIGFPGLPNLTNIVLINCK-------RCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQ 804 (1141)
Q Consensus 732 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~-------~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~ 804 (1141)
.+.++..........+..+++|+.|++++|. ....++.++.+++|+.|++.++.........
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~----------- 239 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR----------- 239 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH-----------
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH-----------
Confidence 5555553322222223468999999999986 3344556788889999998775421110000
Q ss_pred ccceeecccccccccccccCccccCCcccEEeeccCccccCCC---------CCCCCCeEEEeccCcchhccccccccee
Q 001145 805 SLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMP---------WFPSLQHLEFRNCNEMIMKSATNFSTLL 875 (1141)
Q Consensus 805 ~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp---------~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 875 (1141)
. ......++|+.|++++|..-..+| .+++|+.++++++.. ..
T Consensus 240 ---------~---------~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~---------- 290 (520)
T 2z7x_B 240 ---------I---------LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF---------- 290 (520)
T ss_dssp ---------H---------HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS----------
T ss_pred ---------H---------HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec----------
Confidence 0 000123578888888875432343 245566666666543 00
Q ss_pred eeeecCcCCcchhhhhhhc---CCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeE
Q 001145 876 TLLIDGFTGQLVIFERLLE---NNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEI 952 (1141)
Q Consensus 876 ~L~l~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L 952 (1141)
+...+. ..++|+.|++++|...... .+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 291 -------------p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 291 -------------PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp -------------CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred -------------chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 001111 1257999999998754322 1268899999999999998888888999999999999
Q ss_pred ccCCCCc--cccccCCCCCCcCEEEEccCCCCCCcccc-cCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCC
Q 001145 953 SECHSLT--VLPEGIEGLTSLRSLSIENCENLAYIPRG-LGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPE 1029 (1141)
Q Consensus 953 s~~~~l~--~~~~~~~~l~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 1029 (1141)
++|.+.+ .+|..+..+++|++|++++|.....+|.. +..+++|+.|++++|.+....|..+. ++|+.|++++|.+
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence 9999876 45667889999999999998887767764 78899999999999998877666554 7999999999998
Q ss_pred cccccccCCCCCCcCeEeeccCCCCcccCcC-CCCCCCcCEEeeccCCCccc
Q 001145 1030 LASLPDELQHVTTLQSLEIHSCPAFKDLPEW-IGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1030 ~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~-l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|++...
T Consensus 434 ~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 434 K-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred c-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 6 78888889999999999999865 67765 88999999999999987654
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-32 Score=335.33 Aligned_cols=384 Identities=15% Similarity=0.095 Sum_probs=283.1
Q ss_pred CCCccccccccccccCceEecCCCcccc------------------cchhhh--cCCCCcEEecCCCCCCcccCccccCC
Q 001145 551 SGIKKLHSSISCLISLRYLNMSNTLIER------------------LPESIC--DLVYLQVLNLSDCHDLIELPKRLASI 610 (1141)
Q Consensus 551 ~~l~~lp~~i~~L~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L 610 (1141)
|.++.+|..|++|++|++|+|++|.++. +|..++ +|++|++|+|++|.....+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 6677799999999999999999999998 999988 99999999999999899999999999
Q ss_pred CCCcEEEecCccccc--ccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCC
Q 001145 611 FQLRHLMIYGCCRLS--QFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKP 688 (1141)
Q Consensus 611 ~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~ 688 (1141)
++|++|++++|..+. .+|..+++++. .+..++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~----------------------------------------------~~~~l~ 548 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLAD----------------------------------------------DEDTGP 548 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHH----------------------------------------------CTTTTT
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhh----------------------------------------------cccccC
Confidence 999999999996244 58877765540 011223
Q ss_pred CCceEEEEEecCCCccccccccchhhHHHhhc--ccCCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCC
Q 001145 689 KLHSLGLSWRNNHDALMKETDDRNRQAEEVLD--SLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCEN 766 (1141)
Q Consensus 689 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 766 (1141)
+|+.|+++.+... .++. .+..+++|+.|++++|.+..+| .+ ..+++|+.|+|++|.+. .
T Consensus 549 ~L~~L~Ls~N~L~---------------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~--~~L~~L~~L~Ls~N~l~-~ 609 (876)
T 4ecn_A 549 KIQIFYMGYNNLE---------------EFPASASLQKMVKLGLLDCVHNKVRHLE-AF--GTNVKLTDLKLDYNQIE-E 609 (876)
T ss_dssp TCCEEECCSSCCC---------------BCCCHHHHTTCTTCCEEECTTSCCCBCC-CC--CTTSEESEEECCSSCCS-C
T ss_pred CccEEEeeCCcCC---------------ccCChhhhhcCCCCCEEECCCCCcccch-hh--cCCCcceEEECcCCccc-c
Confidence 4445554433211 2333 5667788999999999888888 44 37899999999999877 5
Q ss_pred CCC-CCCCCC-cceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccEEeeccCcccc
Q 001145 767 LPA-LGQLPF-LRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLK 844 (1141)
Q Consensus 767 l~~-l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~ 844 (1141)
+|. ++.+++ |+.|++++|... .++..+.. ...++|+.|++++|..-.
T Consensus 610 lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~------------------------------~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA------------------------------KSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCTTSCEECTTCCEEECCSSCCC-SCCSCCCT------------------------------TCSSCEEEEECCSSCTTT
T ss_pred chHHHhhccccCCEEECcCCCCC-cCchhhhc------------------------------cccCCCCEEECcCCcCCC
Confidence 554 888998 999999988633 33221110 012234444444443211
Q ss_pred CCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccc-cCCCCcc
Q 001145 845 NMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSK-LGCLVAL 923 (1141)
Q Consensus 845 ~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L 923 (1141)
.+|.++. ......+++|+.|++++|... .+|.. +..+++|
T Consensus 659 ~ip~l~~--------------------------------------~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L 699 (876)
T 4ecn_A 659 EGRNISC--------------------------------------SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI 699 (876)
T ss_dssp TSSSCSS--------------------------------------CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC
T ss_pred ccccchh--------------------------------------hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC
Confidence 1111000 000123468999999999765 66655 4589999
Q ss_pred Ceeeccccccccccccccc--------CCCCCCEEeEccCCCCccccccCC--CCCCcCEEEEccCCCCCCcccccCCCC
Q 001145 924 KSLTIRWCQELIALPQEIQ--------NLSLLESLEISECHSLTVLPEGIE--GLTSLRSLSIENCENLAYIPRGLGHLI 993 (1141)
Q Consensus 924 ~~L~L~~~~~~~~l~~~l~--------~l~~L~~L~Ls~~~~l~~~~~~~~--~l~~L~~L~L~~~~~l~~l~~~~~~l~ 993 (1141)
+.|++++|.+. .+|..+. ++++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.... +|..+..++
T Consensus 700 ~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~ 776 (876)
T 4ecn_A 700 STIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776 (876)
T ss_dssp SEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT
T ss_pred CEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC
Confidence 99999999976 5554432 2349999999999866 6788776 89999999999987766 788899999
Q ss_pred CccEEeecC------CCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCc
Q 001145 994 ALEHLTIMY------CPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSL 1067 (1141)
Q Consensus 994 ~L~~L~l~~------~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L 1067 (1141)
+|+.|++++ |.+...+|..+..+++|+.|+|++|.+ +.+|..+. ++|+.|+|++|++...-+..+.....+
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~ 853 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA 853 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHT
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccc
Confidence 999999977 667778899999999999999999999 88888765 699999999999766544444443344
Q ss_pred CEEeeccC
Q 001145 1068 TSLTISDC 1075 (1141)
Q Consensus 1068 ~~L~l~~n 1075 (1141)
..+.+.+|
T Consensus 854 ~~~~L~~n 861 (876)
T 4ecn_A 854 GMYVLLYD 861 (876)
T ss_dssp TCCEEECC
T ss_pred hheeecCC
Confidence 45555544
No 25
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=319.72 Aligned_cols=280 Identities=24% Similarity=0.331 Sum_probs=215.4
Q ss_pred cCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc-cccc-ceEEEEEeCcchhH----
Q 001145 160 ESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV-TKSF-ELKIWVCVNEDFNS---- 233 (1141)
Q Consensus 160 ~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~---- 233 (1141)
.+.||||++++++|.++|... ..+.++|+|+||||+||||||++++++.++ ..+| +.++|+++++....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcc-----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHH
Confidence 356999999999999999754 124689999999999999999999997655 7789 47999998754111
Q ss_pred ----------------------------HHHHHhcC--cceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH
Q 001145 234 ----------------------------QLRRLLRG--RRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK 283 (1141)
Q Consensus 234 ----------------------------~l~~~l~~--k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~ 283 (1141)
.+.+.+.+ +++||||||+|+. ..+. .+ .+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcH
Confidence 23333433 7899999999852 2222 23 56899999999998
Q ss_pred HHHhhCCCCceeC---CCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhcccCChhhHHHhh
Q 001145 284 VATIVGTIPPYYL---KGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLYVQ 360 (1141)
Q Consensus 284 v~~~~~~~~~~~l---~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~ 360 (1141)
++..+. ...+++ .+|+.+|+++||...++.. .....+.+.+|+++|+|+|+|+..+|+.++.+. ..|....
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l 342 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYL 342 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHH
Confidence 876543 234444 5899999999999988642 223456789999999999999999999998764 3677654
Q ss_pred cccc---cc-c----ccCccchhHHHHhhccCCcchhhhhhccccccCCCceechHHHHHHHHHcCCcccCcccccHHHH
Q 001145 361 ESDL---WN-A----CEGENRILPALRLSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTHLWIAEGLIRSKDERKALEDI 432 (1141)
Q Consensus 361 ~~~~---~~-~----~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 432 (1141)
.... +. . ......+..++..||+.||++.|.||.+||+||+++.|+.+.++.+|.++ .+.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~ 410 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEE 410 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHH
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHH
Confidence 4211 11 0 11224588999999999999999999999999999999999999999542 234
Q ss_pred HHHHHHHHhhccccccccCCCCCCeecccchhHHHHHHHHhh
Q 001145 433 ANDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDLAQSVV 474 (1141)
Q Consensus 433 ~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~~~~~ 474 (1141)
++.++++|+++++++... ++....|+||+++|++++...
T Consensus 411 ~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 788999999999998543 234456899999999998763
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=4e-30 Score=310.25 Aligned_cols=141 Identities=19% Similarity=0.205 Sum_probs=111.5
Q ss_pred eEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccc-cccccccccCceEecC
Q 001145 494 RHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKL-HSSISCLISLRYLNMS 572 (1141)
Q Consensus 494 r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 572 (1141)
+++.+..+ .+..+|..+. +++++|++ +.+.+..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|+
T Consensus 34 ~~l~ls~~-~L~~ip~~~~--~~L~~L~L--s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNR-NLTHVPKDLP--PRTKALSL--SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTS-CCCSCCTTSC--TTCCEEEC--CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcCCC-CCccCCCCCC--CCcCEEEC--CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 45555444 4555676553 78999998 77788888888899999999999999999988 5789999999999999
Q ss_pred CCcccccchhhhcCCCCcEEecCCCCCCc-ccCccccCCCCCcEEEecCcccccccCcccCCCCCC--CccCceE
Q 001145 573 NTLIERLPESICDLVYLQVLNLSDCHDLI-ELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQL--QTLPVFI 644 (1141)
Q Consensus 573 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~~~~ 644 (1141)
+|.++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..+..+++| ++|++..
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEE
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeec
Confidence 9999999987 89999999999987443 345789999999999999984332 234555555 7776543
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.6e-29 Score=304.92 Aligned_cols=265 Identities=16% Similarity=0.092 Sum_probs=189.5
Q ss_pred cCCcccEEeeccCc----cc----cCCCCCCCCCeEEEeccCcchh-----cccccccceeeeeecCcCCcchhhhhhh-
Q 001145 828 EFPSLVKLFINKCE----RL----KNMPWFPSLQHLEFRNCNEMIM-----KSATNFSTLLTLLIDGFTGQLVIFERLL- 893 (1141)
Q Consensus 828 ~~p~L~~L~i~~c~----~L----~~lp~l~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~l~~~~~~~~~~~~~~- 893 (1141)
.+++|+.++++++. .+ ..+..+++|+.|++.++..... ........++.|.+.++.....++...+
T Consensus 219 ~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 45677777777652 11 1233467778888877653211 1111223677777665432211111111
Q ss_pred ---cCCCCccEEEEecCCCcccccc-ccC---CCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCC
Q 001145 894 ---ENNPCLTSLTISSCPNLRSISS-KLG---CLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIE 966 (1141)
Q Consensus 894 ---~~~~~L~~L~L~~~~~~~~~~~-~~~---~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~ 966 (1141)
..++.|+.+++..+.. .+|. .+. ...+|++|++++|.+.... ....+++|++|++++|.+.+..|..+.
T Consensus 299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence 4445555555555443 3331 111 1256899999998864321 126889999999999998888888899
Q ss_pred CCCCcCEEEEccCCCCC--CcccccCCCCCccEEeecCCCCCcccC-cCccccCCcceEEecCCCCcccccccCCCCCCc
Q 001145 967 GLTSLRSLSIENCENLA--YIPRGLGHLIALEHLTIMYCPSLAFLP-ENFRNLTMLKSLCILSCPELASLPDELQHVTTL 1043 (1141)
Q Consensus 967 ~l~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 1043 (1141)
.+++|+.|++++|.... .+|..+..+++|+.|++++|.+...+| ..+..+++|+.|++++|.+.+.+|..+. ++|
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L 452 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence 99999999999987665 345678999999999999999987444 4588899999999999999877776554 799
Q ss_pred CeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCC-CCCCCCcceEeccCCc
Q 001145 1044 QSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPAN-LQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1044 ~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~-~~~l~~L~~L~l~~c~ 1100 (1141)
+.|++++|.+ +.+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++||
T Consensus 453 ~~L~L~~N~l-~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 453 KVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SEEECCSSCC-CCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred CEEECCCCcC-cccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 9999999975 478888889999999999999877 56665 8899999999999996
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.7e-28 Score=288.68 Aligned_cols=138 Identities=17% Similarity=0.079 Sum_probs=91.2
Q ss_pred CCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEe
Q 001145 945 SLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCI 1024 (1141)
Q Consensus 945 ~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 1024 (1141)
++|+.|++++|.+.+..|..+..+++|++|++++|......|..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 56777777777766666666666777777777776665555556666777777777777666555666666677777777
Q ss_pred cCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccC
Q 001145 1025 LSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1025 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp 1082 (1141)
++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++....|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7776655556666667777777777766554444455666777777777776665544
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=9.2e-28 Score=282.13 Aligned_cols=173 Identities=21% Similarity=0.248 Sum_probs=135.2
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++|+.|++++|... .++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... +. +..+++|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 290 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALT 290 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccC
Confidence 344677888888887643 333 46788899999999998766544 78889999999999886654 33 77889999
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
.|++++|......+ +..+++|+.|++++|.+....| +..+++|+.|++++|.+.+. ..+.++++|+.|++++|.
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence 99999977655433 7788999999999998876655 67888999999999987654 467788999999999988
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
+.+..| +..+++|+.|++++|++.+
T Consensus 365 l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 365 ISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCccch--hhcCCCCCEEeccCCcccC
Confidence 776655 7888999999999887765
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.2e-27 Score=292.88 Aligned_cols=519 Identities=19% Similarity=0.150 Sum_probs=335.7
Q ss_pred CCCCceeEEEEEeCCCCCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccc-cccccccC
Q 001145 488 RHLAQTRHSSVVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHS-SISCLISL 566 (1141)
Q Consensus 488 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L 566 (1141)
.+|..++++.+..+......+..|..+++|++|+| +.+.+..+++.+|.++++|++|+|++|.++.+|. .|+++.+|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L--s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC--CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 35678899999887433333468999999999998 7788888888899999999999999999999985 68999999
Q ss_pred ceEecCCCcccccch-hhhcCCCCcEEecCCCCCCc-ccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceE
Q 001145 567 RYLNMSNTLIERLPE-SICDLVYLQVLNLSDCHDLI-ELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFI 644 (1141)
Q Consensus 567 ~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 644 (1141)
++|+|++|.++.+|. .|++|++|++|++++|.... .+|..++.+++|++|++++|......|..+..+.+++.+....
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 999999999999975 58999999999999987433 5688899999999999999954444455576666665543321
Q ss_pred eccccCCCccccCCCCCCCeEEEcc--ccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhccc
Q 001145 645 VGTEISQGLKQLHSLPLAGELNIRK--LENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSL 722 (1141)
Q Consensus 645 ~~~~~~~~l~~L~~L~l~~~l~i~~--l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 722 (1141)
.-.. ..+..+..-... ...... +.............+..+..++...+......... .........+
T Consensus 207 ~ls~--n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~--------~l~~~~~~~~ 275 (635)
T 4g8a_A 207 DLSL--NPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG--------NLEKFDKSAL 275 (635)
T ss_dssp ECTT--CCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCCCTTTT
T ss_pred hccc--CcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccc--------cccccccccc
Confidence 1100 011111100000 000000 00000011111222333333433333322111000 0000000011
Q ss_pred CCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCC----CCCCCCCCCCcceeeecCCCCceEeCCcccCCC
Q 001145 723 QPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCE----NLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRG 798 (1141)
Q Consensus 723 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~----~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 798 (1141)
. .+..+....+..+.... ....+..+++++.+.+.++....... +
T Consensus 276 ~-------------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~---- 324 (635)
T 4g8a_A 276 E-------------------------GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--F---- 324 (635)
T ss_dssp G-------------------------GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--G----
T ss_pred c-------------------------cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--c----
Confidence 1 12223333332221111 11223444555555555443211110 0
Q ss_pred CCCcccccceeecccccccccccccCccccCCcccEEeeccCccccC--CCCCCCCCeEEEeccCcchhcccccccceee
Q 001145 799 SGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKN--MPWFPSLQHLEFRNCNEMIMKSATNFSTLLT 876 (1141)
Q Consensus 799 ~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~--lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 876 (1141)
....+|+.|.+.++.-... ....++.|+.+.+..+..-.. ...+++|+.|+++++......
T Consensus 325 --~~~~~L~~L~l~~~~~~~~-----~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~---------- 387 (635)
T 4g8a_A 325 --SYNFGWQHLELVNCKFGQF-----PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG---------- 387 (635)
T ss_dssp --GSCCCCSEEEEESCEESSC-----CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE----------
T ss_pred --ccchhhhhhhcccccccCc-----CcccchhhhhcccccccCCCCcccccccccccchhhcccccccc----------
Confidence 0123344444433321100 011344455555444332111 112556666666655432111
Q ss_pred eeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeeccccccccccc-ccccCCCCCCEEeEccC
Q 001145 877 LLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALP-QEIQNLSLLESLEISEC 955 (1141)
Q Consensus 877 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~Ls~~ 955 (1141)
..+..+..+.+|+.|++..+.. ...+..+..+++|+.+++..|......+ ..+..+++|+.+++++|
T Consensus 388 -----------~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 388 -----------CCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp -----------ECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred -----------ccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 1123355678899999988764 4455567889999999999888766544 45788999999999999
Q ss_pred CCCccccccCCCCCCcCEEEEccCCCCC-CcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCccccc
Q 001145 956 HSLTVLPEGIEGLTSLRSLSIENCENLA-YIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLP 1034 (1141)
Q Consensus 956 ~~l~~~~~~~~~l~~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 1034 (1141)
.+....+..+..+++|+.|++++|.... ..|..+..+++|+.|++++|.+....|..+.++++|++|+|++|++....|
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 9887777788899999999999987655 456788999999999999999998889999999999999999999987778
Q ss_pred ccCCCCCCcCeEeeccCCCCcccCcCCCCC-CCcCEEeeccCCCcc
Q 001145 1035 DELQHVTTLQSLEIHSCPAFKDLPEWIGNL-SSLTSLTISDCHTII 1079 (1141)
Q Consensus 1035 ~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l-~~L~~L~l~~n~~~~ 1079 (1141)
..+.++++|+.|++++|.+.+..|+.+..+ ++|+.|++++|++..
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 889999999999999999988888888888 689999999998753
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.5e-27 Score=280.20 Aligned_cols=346 Identities=20% Similarity=0.241 Sum_probs=205.6
Q ss_pred cCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEE
Q 001145 513 EAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVL 592 (1141)
Q Consensus 513 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 592 (1141)
.+++++.|.+ ..+.+..++ . +..+++|++|+|++|.++.+|. ++++++|++|++++|.+..+|. +.++++|++|
T Consensus 44 ~l~~l~~L~l--~~~~i~~l~-~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQA--DRLGIKSID-G-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEEC--CSSCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred HhccccEEec--CCCCCccCc-c-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 4567788886 444444432 2 6778888888888888888876 8888888888888888888876 8888888888
Q ss_pred ecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccc
Q 001145 593 NLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLEN 672 (1141)
Q Consensus 593 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~ 672 (1141)
++++|. +..+|. +..+++|++|++++| .+..++ .++.+++|+.|
T Consensus 118 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L-------------------------------- 161 (466)
T 1o6v_A 118 TLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQL-------------------------------- 161 (466)
T ss_dssp ECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEE--------------------------------
T ss_pred ECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEe--------------------------------
Confidence 888875 555665 888888888888887 333333 24455544444
Q ss_pred cCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCcccCCCCCCC
Q 001145 673 VKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPN 752 (1141)
Q Consensus 673 ~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 752 (1141)
.+..... ....+..+++|+.|+++++....++. + ..+++
T Consensus 162 ---------------------~l~~~~~-----------------~~~~~~~l~~L~~L~l~~n~l~~~~~-l--~~l~~ 200 (466)
T 1o6v_A 162 ---------------------SFGNQVT-----------------DLKPLANLTTLERLDISSNKVSDISV-L--AKLTN 200 (466)
T ss_dssp ---------------------EEEESCC-----------------CCGGGTTCTTCCEEECCSSCCCCCGG-G--GGCTT
T ss_pred ---------------------ecCCccc-----------------CchhhccCCCCCEEECcCCcCCCChh-h--ccCCC
Confidence 3321000 00113334445555555544433322 1 13444
Q ss_pred ccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcc
Q 001145 753 LTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSL 832 (1141)
Q Consensus 753 L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L 832 (1141)
|+.|++++|.+.... .++.+++|+.|++++|...
T Consensus 201 L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~--------------------------------------------- 234 (466)
T 1o6v_A 201 LESLIATNNQISDIT-PLGILTNLDELSLNGNQLK--------------------------------------------- 234 (466)
T ss_dssp CSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC---------------------------------------------
T ss_pred CCEEEecCCcccccc-cccccCCCCEEECCCCCcc---------------------------------------------
Confidence 444444444332211 1333333333333332100
Q ss_pred cEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccc
Q 001145 833 VKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRS 912 (1141)
Q Consensus 833 ~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 912 (1141)
.+ ..+..+++|+.|++++|.....
T Consensus 235 ------------~~--------------------------------------------~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 235 ------------DI--------------------------------------------GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp ------------CC--------------------------------------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred ------------cc--------------------------------------------hhhhcCCCCCEEECCCCccccc
Confidence 00 0133445566666666543332
Q ss_pred cccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCC
Q 001145 913 ISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHL 992 (1141)
Q Consensus 913 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l 992 (1141)
.+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|......| +..+
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 22 5566666667776666554332 5666777777777776544322 5566777777777766554443 5667
Q ss_pred CCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCc
Q 001145 993 IALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 993 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
++|+.|++++|.+... ..+..+++|+.|++++|++.+..| +..+++|+.|++++|++.+
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7777777777766543 356667777777777777765555 6677777777777776543
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=9.9e-28 Score=278.39 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCcccEEEccCCCCccccccccccccCceEecCCCccc-ccchhhhcCCCC-------------cEEecCCCCCCcccCc
Q 001145 540 FRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIE-RLPESICDLVYL-------------QVLNLSDCHDLIELPK 605 (1141)
Q Consensus 540 l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp~ 605 (1141)
..+|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++.+| ++|++++|. +..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 45677777777777777777777777777777777665 567777666654 666666654 455554
Q ss_pred cccCCCCCcEEEecCcccccccCc
Q 001145 606 RLASIFQLRHLMIYGCCRLSQFPD 629 (1141)
Q Consensus 606 ~i~~L~~L~~L~l~~~~~~~~~p~ 629 (1141)
. .++|++|++++| .+..+|.
T Consensus 89 ~---~~~L~~L~l~~n-~l~~lp~ 108 (454)
T 1jl5_A 89 L---PPHLESLVASCN-SLTELPE 108 (454)
T ss_dssp C---CTTCSEEECCSS-CCSSCCC
T ss_pred C---cCCCCEEEccCC-cCCcccc
Confidence 2 356667776665 3344553
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=3.4e-27 Score=277.51 Aligned_cols=384 Identities=15% Similarity=0.088 Sum_probs=255.6
Q ss_pred ccEEEccCCCCccccccccccccCceEecCCCccccc-chhhhcCCCCcEEecCCCCCCccc-CccccCCCCCcEEEecC
Q 001145 543 LRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERL-PESICDLVYLQVLNLSDCHDLIEL-PKRLASIFQLRHLMIYG 620 (1141)
Q Consensus 543 Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 620 (1141)
-+.++.+++.++.+|. + .++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..+..+++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3568888899999997 3 38999999999999987 788999999999999998865455 56789999999999999
Q ss_pred cccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecC
Q 001145 621 CCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNN 700 (1141)
Q Consensus 621 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~ 700 (1141)
|......|..++.+++|++|++ +.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L-----------------------------------------------------~~n~l 115 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTL-----------------------------------------------------TQCNL 115 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEEC-----------------------------------------------------TTSCC
T ss_pred CccCccChhhccCcccCCEEeC-----------------------------------------------------CCCCC
Confidence 8544444666766666666533 11000
Q ss_pred CCccccccccchhhHHHhh--cccCCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCC--CCCCCCc
Q 001145 701 HDALMKETDDRNRQAEEVL--DSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPA--LGQLPFL 776 (1141)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L 776 (1141)
....+ ..+.. +++|+.|++++|.+....|. ++.+++|
T Consensus 116 --------------~~~~~~~~~~~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 116 --------------DGAVLSGNFFKP-------------------------LTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp --------------BTHHHHSSTTTT-------------------------CTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred --------------CccccCcccccC-------------------------cccCCEEECCCCccCccCcccccCCCCcc
Confidence 00011 11333 44555555555544443333 4555666
Q ss_pred ceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeEE
Q 001145 777 RVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHLE 856 (1141)
Q Consensus 777 ~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L~ 856 (1141)
++|++++|......+..+ ..+ ..+.|+.|.+.++.. ..++..
T Consensus 157 ~~L~L~~n~l~~~~~~~l---------~~l---------------------~~~~L~~L~l~~n~l-~~~~~~------- 198 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDL---------LNF---------------------QGKHFTLLRLSSITL-QDMNEY------- 198 (455)
T ss_dssp CEEECTTCCBSCCCTTTS---------GGG---------------------TTCEEEEEECTTCBC-TTCSTT-------
T ss_pred cEEeCCCCcccccChhhh---------hcc---------------------ccccccccccccCcc-cccchh-------
Confidence 666666554222111110 000 011222333322210 000000
Q ss_pred EeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCC---CCccCeeecccccc
Q 001145 857 FRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGC---LVALKSLTIRWCQE 933 (1141)
Q Consensus 857 l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~---~~~L~~L~L~~~~~ 933 (1141)
. ........+..+++|+.|++++|......|..+.. .++|+.|++++|..
T Consensus 199 ----------~-----------------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 199 ----------W-----------------LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp ----------C-----------------TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred ----------h-----------------ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 0 00000111334567777777777665555544322 25666666666654
Q ss_pred cccccccccCCCCCCEEeEccCCCCccccccCC--CCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCc
Q 001145 934 LIALPQEIQNLSLLESLEISECHSLTVLPEGIE--GLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPE 1011 (1141)
Q Consensus 934 ~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~--~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 1011 (1141)
.+... ....++.+ .+..+. ..++|+.|++++|......|..++.+++|+.|++++|.+....|.
T Consensus 252 ~~~~~-~~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 252 MGSSF-GHTNFKDP-------------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TSCCT-TCCSSCCC-------------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccccc-chhhhccC-------------cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 33211 00111111 011111 247899999999998888888899999999999999999988888
Q ss_pred CccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCc
Q 001145 1012 NFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTL 1091 (1141)
Q Consensus 1012 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L 1091 (1141)
.+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999999999987778889999999999999999887778999999999999999998887666677899999
Q ss_pred ceEeccCCc
Q 001145 1092 QHLSIRECP 1100 (1141)
Q Consensus 1092 ~~L~l~~c~ 1100 (1141)
+.|++++|+
T Consensus 398 ~~L~l~~N~ 406 (455)
T 3v47_A 398 QKIWLHTNP 406 (455)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCC
Confidence 999999985
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.2e-26 Score=270.57 Aligned_cols=188 Identities=19% Similarity=0.177 Sum_probs=160.7
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++|+.|++++|......+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+.++.......+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 55667888999998876555555688999999999999998877777899999999999999998888888666677999
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
+|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....|..+..+++|+.|++++|.
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999987665444578899999999999999887777888999999999999999988888889999999999999998
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
+....+..+..+++|+.|++++|++...
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCc
Confidence 7665556788899999999999987643
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.7e-26 Score=268.35 Aligned_cols=359 Identities=15% Similarity=0.139 Sum_probs=215.4
Q ss_pred hhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCC
Q 001145 509 ESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVY 588 (1141)
Q Consensus 509 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~ 588 (1141)
..+..+++|++|++ +.+.+...+ .|..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| ++++++
T Consensus 36 ~~~~~l~~L~~L~L--s~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDC--HNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEEC--CSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred cChhHcCCCCEEEc--cCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 34566777777776 555555442 3677777777777777777765 777777777777777777765 777777
Q ss_pred CcEEecCCCCCCcccCccccCCCCCcEEEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEc
Q 001145 589 LQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIR 668 (1141)
Q Consensus 589 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~ 668 (1141)
|++|++++|. +..+| ++.+++|++|++++| .+..++ ++.+++|++|
T Consensus 108 L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L---------------------------- 153 (457)
T 3bz5_A 108 LTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTEL---------------------------- 153 (457)
T ss_dssp CCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEE----------------------------
T ss_pred CCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEE----------------------------
Confidence 7777777765 44454 677777777777776 333332 4444444444
Q ss_pred cccccCCcchHHHhcccCCCCCceEEEEEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCcccCCC
Q 001145 669 KLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGFP 748 (1141)
Q Consensus 669 ~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 748 (1141)
+++.+.... .+ .+..+++|+.|++++|....+| + .
T Consensus 154 -------------------------~l~~n~~~~--------------~~--~~~~l~~L~~L~ls~n~l~~l~--l--~ 188 (457)
T 3bz5_A 154 -------------------------DCHLNKKIT--------------KL--DVTPQTQLTTLDCSFNKITELD--V--S 188 (457)
T ss_dssp -------------------------ECTTCSCCC--------------CC--CCTTCTTCCEEECCSSCCCCCC--C--T
T ss_pred -------------------------ECCCCCccc--------------cc--ccccCCcCCEEECCCCccceec--c--c
Confidence 222111000 00 1334455666666666655554 2 2
Q ss_pred CCCCccEEEEeccCCCCCCCCCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCcccc
Q 001145 749 GLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEE 828 (1141)
Q Consensus 749 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~ 828 (1141)
.+++|+.|++++|.+... .++.+++|+.|++++|.... ++ ...
T Consensus 189 ~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip----------------------------------~~~ 231 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID----------------------------------VTP 231 (457)
T ss_dssp TCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC----------------------------------CTT
T ss_pred cCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC----------------------------------ccc
Confidence 456666666666654432 35556666666665553211 10 001
Q ss_pred CCcccEEeeccCccccCCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCC
Q 001145 829 FPSLVKLFINKCERLKNMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCP 908 (1141)
Q Consensus 829 ~p~L~~L~i~~c~~L~~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 908 (1141)
+++|+.|++++|..... .+..+++|+.|+++++
T Consensus 232 --------------------l~~L~~L~l~~N~l~~~--------------------------~~~~l~~L~~L~l~~n- 264 (457)
T 3bz5_A 232 --------------------LTQLTYFDCSVNPLTEL--------------------------DVSTLSKLTTLHCIQT- 264 (457)
T ss_dssp --------------------CTTCSEEECCSSCCSCC--------------------------CCTTCTTCCEEECTTC-
T ss_pred --------------------cCCCCEEEeeCCcCCCc--------------------------CHHHCCCCCEEeccCC-
Confidence 23333344333321100 0234455666665443
Q ss_pred CccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccc
Q 001145 909 NLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRG 988 (1141)
Q Consensus 909 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~ 988 (1141)
+|+.|++++|...+.+| +..+++|+.|++++|..++.+|. ..++|+.|++++|
T Consensus 265 -------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~--------- 317 (457)
T 3bz5_A 265 -------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN--------- 317 (457)
T ss_dssp -------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---------
T ss_pred -------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc---------
Confidence 46677777777666665 45677888888888877776664 3455665555543
Q ss_pred cCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcC
Q 001145 989 LGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLT 1068 (1141)
Q Consensus 989 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~ 1068 (1141)
++|+.|++++|.+... .+..+++|+.|++++|++.+ +++|+.|++++|.+.+. ..+..|.
T Consensus 318 ----~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~ 377 (457)
T 3bz5_A 318 ----PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMP 377 (457)
T ss_dssp ----TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECC
T ss_pred ----ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecC
Confidence 5677888888877653 26777888888888887643 35667777777765443 2455677
Q ss_pred EEeeccCCCccccCCCC
Q 001145 1069 SLTISDCHTIISLPANL 1085 (1141)
Q Consensus 1069 ~L~l~~n~~~~~lp~~~ 1085 (1141)
.+++++|.+.+.+|..+
T Consensus 378 ~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 378 KETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CBCCBTTBEEEECCTTC
T ss_pred ccccccCcEEEEcChhH
Confidence 78888888888887654
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.7e-26 Score=265.40 Aligned_cols=338 Identities=17% Similarity=0.132 Sum_probs=201.8
Q ss_pred ccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcE
Q 001145 536 LFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRH 615 (1141)
Q Consensus 536 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 615 (1141)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCE
Confidence 4677889999999999998887 6889999999999999999886 8899999999999987 55555 888999999
Q ss_pred EEecCcccccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEE
Q 001145 616 LMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGL 695 (1141)
Q Consensus 616 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l 695 (1141)
|++++| .+..+| ++.+++|++|
T Consensus 111 L~L~~N-~l~~l~--~~~l~~L~~L------------------------------------------------------- 132 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VSQNPLLTYL------------------------------------------------------- 132 (457)
T ss_dssp EECCSS-CCSCCC--CTTCTTCCEE-------------------------------------------------------
T ss_pred EECCCC-cCCeec--CCCCCcCCEE-------------------------------------------------------
Confidence 999887 343333 4444443333
Q ss_pred EEecCCCccccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCC
Q 001145 696 SWRNNHDALMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPF 775 (1141)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 775 (1141)
++++|....++ + ..+++|+.|++++|.....+ .++.+++
T Consensus 133 ------------------------------------~l~~N~l~~l~--l--~~l~~L~~L~l~~n~~~~~~-~~~~l~~ 171 (457)
T 3bz5_A 133 ------------------------------------NCARNTLTEID--V--SHNTQLTELDCHLNKKITKL-DVTPQTQ 171 (457)
T ss_dssp ------------------------------------ECTTSCCSCCC--C--TTCTTCCEEECTTCSCCCCC-CCTTCTT
T ss_pred ------------------------------------ECCCCccceec--c--ccCCcCCEEECCCCCccccc-ccccCCc
Confidence 33333332222 1 13455555555555433333 3455555
Q ss_pred cceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccCccccCCcccEEeeccCccccCCCCCCCCCeE
Q 001145 776 LRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMNTKEEFPSLVKLFINKCERLKNMPWFPSLQHL 855 (1141)
Q Consensus 776 L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~l~~L~~L 855 (1141)
|+.|++++|.... ++ ...+++|+.|++.+
T Consensus 172 L~~L~ls~n~l~~-l~----------------------------------l~~l~~L~~L~l~~---------------- 200 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD----------------------------------VSQNKLLNRLNCDT---------------- 200 (457)
T ss_dssp CCEEECCSSCCCC-CC----------------------------------CTTCTTCCEEECCS----------------
T ss_pred CCEEECCCCccce-ec----------------------------------cccCCCCCEEECcC----------------
Confidence 5555555543110 00 00112222222222
Q ss_pred EEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccc
Q 001145 856 EFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELI 935 (1141)
Q Consensus 856 ~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 935 (1141)
|..... .+..+++|+.|++++|.... +| +..+++|+.|++++|.+.+
T Consensus 201 ----N~l~~~--------------------------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 201 ----NNITKL--------------------------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ----SCCSCC--------------------------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ----CcCCee--------------------------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 211000 02334445555555543222 33 4445555555555555443
Q ss_pred cccccccCCC----------CCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCC
Q 001145 936 ALPQEIQNLS----------LLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPS 1005 (1141)
Q Consensus 936 ~l~~~l~~l~----------~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~ 1005 (1141)
.. +..++ +|+.|++++|...+.+| +..+++|+.|++++|..++.+|. ..++|+.|++++|
T Consensus 248 ~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-- 317 (457)
T 3bz5_A 248 LD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-- 317 (457)
T ss_dssp CC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC--
T ss_pred cC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc--
Confidence 22 12233 45556666666665555 34567777777777776666653 3455555555554
Q ss_pred CcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCC
Q 001145 1006 LAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANL 1085 (1141)
Q Consensus 1006 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~ 1085 (1141)
++|++|++++|.+.+ + .+.++++|+.|++++|.+.+ ++.|..|++++|.+.+.
T Consensus 318 -----------~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----- 370 (457)
T 3bz5_A 318 -----------PKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----- 370 (457)
T ss_dssp -----------TTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----
T ss_pred -----------ccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----
Confidence 578889999998866 3 37888899999999887543 35677777777766554
Q ss_pred CCCCCcceEeccCC
Q 001145 1086 QHLTTLQHLSIREC 1099 (1141)
Q Consensus 1086 ~~l~~L~~L~l~~c 1099 (1141)
..+.+|+.+++++|
T Consensus 371 ~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 371 GQTITMPKETLTNN 384 (457)
T ss_dssp EEEEECCCBCCBTT
T ss_pred ceeeecCccccccC
Confidence 13456777777776
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.5e-26 Score=266.54 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=78.5
Q ss_pred cccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCC-------------cEEEecCccc
Q 001145 557 HSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQL-------------RHLMIYGCCR 623 (1141)
Q Consensus 557 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L-------------~~L~l~~~~~ 623 (1141)
|+.+ ...+|++|++++|.+..+|.+|++|++|++|++++|.....+|..++++.+| ++|++++| .
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~ 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-G 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-C
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-c
Confidence 3444 4589999999999999999999999999999999988777899999999887 55555544 2
Q ss_pred ccccCcccCCCCCCCccCceEeccccCCCccccCCCCCCCeEEEccccccCCcchHHHhcccCCCCCceEEEEEecCCCc
Q 001145 624 LSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDA 703 (1141)
Q Consensus 624 ~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~l~i~~l~~~~~~~~~~~~~L~~~~~L~~L~l~~~~~~~~ 703 (1141)
+..+|.. .++|+.|+++++....
T Consensus 83 l~~lp~~--------------------------------------------------------~~~L~~L~l~~n~l~~- 105 (454)
T 1jl5_A 83 LSSLPEL--------------------------------------------------------PPHLESLVASCNSLTE- 105 (454)
T ss_dssp CSCCCSC--------------------------------------------------------CTTCSEEECCSSCCSS-
T ss_pred cccCCCC--------------------------------------------------------cCCCCEEEccCCcCCc-
Confidence 3333321 1245555554332211
Q ss_pred cccccccchhhHHHhhcccCCCcCccEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCCCCCCCCcceeeecC
Q 001145 704 LMKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHG 783 (1141)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 783 (1141)
++. .+++|+.|++++|....+|.. .++|+.|++++|.+.. +|.++.+++|++|++++
T Consensus 106 --------------lp~---~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 106 --------------LPE---LPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp --------------CCC---CCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred --------------ccc---ccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 111 126788888888877766643 2578888888887665 66788888888888887
Q ss_pred CC
Q 001145 784 MH 785 (1141)
Q Consensus 784 ~~ 785 (1141)
|.
T Consensus 163 N~ 164 (454)
T 1jl5_A 163 NS 164 (454)
T ss_dssp SC
T ss_pred Cc
Confidence 75
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.1e-25 Score=254.25 Aligned_cols=81 Identities=21% Similarity=0.398 Sum_probs=55.8
Q ss_pred cCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEE
Q 001145 537 FSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHL 616 (1141)
Q Consensus 537 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 616 (1141)
+..+++|+.|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEE
Confidence 3456667777777777776654 6777777777777777777766 7777777777777764 44454 36677777777
Q ss_pred EecCc
Q 001145 617 MIYGC 621 (1141)
Q Consensus 617 ~l~~~ 621 (1141)
++++|
T Consensus 116 ~l~~n 120 (347)
T 4fmz_A 116 YLNED 120 (347)
T ss_dssp ECTTS
T ss_pred ECcCC
Confidence 77665
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.7e-25 Score=261.53 Aligned_cols=165 Identities=21% Similarity=0.141 Sum_probs=143.4
Q ss_pred hhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCc
Q 001145 892 LLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSL 971 (1141)
Q Consensus 892 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L 971 (1141)
.+..+++|+.|++++|......+..+..+++|+.|++++|...+.+|.......+|++|++++|.+....+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 36778899999999998766666678999999999999999988888777777899999999998765433478889999
Q ss_pred CEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccC
Q 001145 972 RSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSC 1051 (1141)
Q Consensus 972 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1051 (1141)
+.|++++|......+..+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+....+..+..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999998877666667899999999999999999888999999999999999999997766677889999999999999
Q ss_pred CCCcc
Q 001145 1052 PAFKD 1056 (1141)
Q Consensus 1052 ~~~~~ 1056 (1141)
++...
T Consensus 331 ~l~c~ 335 (477)
T 2id5_A 331 PLACD 335 (477)
T ss_dssp CEECS
T ss_pred CccCc
Confidence 87543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.1e-25 Score=246.99 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=50.6
Q ss_pred cccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCc
Q 001145 559 SISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGC 621 (1141)
Q Consensus 559 ~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 621 (1141)
.+..+++|++|+++++.+..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n 98 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN 98 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred cchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCC
Confidence 35678899999999999988875 8889999999999975 566666 888899999998887
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-23 Score=240.70 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCcccEEEccCCCCcccccc-ccccccCceEecCCCcccccch-hhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEE
Q 001145 540 FRYLRTLNLSGSGIKKLHSS-ISCLISLRYLNMSNTLIERLPE-SICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLM 617 (1141)
Q Consensus 540 l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 617 (1141)
++++++|+++++.++.+|.. +..+++|++|++++|.++.+|. .+..+++|++|++++|......|..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46677777777777777654 4677777777777777776653 677777777777777664444445567777777777
Q ss_pred ecCc
Q 001145 618 IYGC 621 (1141)
Q Consensus 618 l~~~ 621 (1141)
+++|
T Consensus 124 L~~n 127 (390)
T 3o6n_A 124 LERN 127 (390)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7766
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.6e-23 Score=251.82 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=53.1
Q ss_pred CCcccEEEccCCCCcccccc-ccccccCceEecCCCcccccch-hhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEE
Q 001145 540 FRYLRTLNLSGSGIKKLHSS-ISCLISLRYLNMSNTLIERLPE-SICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLM 617 (1141)
Q Consensus 540 l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 617 (1141)
+.++++|++++|.+..+|.. ++++++|++|+|++|.+..+|. .|+.+++|++|+|++|......|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666777777777666653 4666777777777777766643 666777777777776664443444456667777777
Q ss_pred ecCc
Q 001145 618 IYGC 621 (1141)
Q Consensus 618 l~~~ 621 (1141)
+++|
T Consensus 130 L~~n 133 (597)
T 3oja_B 130 LERN 133 (597)
T ss_dssp CCSS
T ss_pred eeCC
Confidence 6666
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=5.1e-23 Score=230.14 Aligned_cols=78 Identities=24% Similarity=0.232 Sum_probs=56.6
Q ss_pred cccEEEccCCCCccccccccccccCceEecCCCcccccc-hhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecC
Q 001145 542 YLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLP-ESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYG 620 (1141)
Q Consensus 542 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 620 (1141)
++++++++++.++.+|..+. ++|++|++++|.++.+| ..+.++++|++|++++|......|..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57788888888888877664 57888888888777774 4677778888888877764444466677777777777766
Q ss_pred c
Q 001145 621 C 621 (1141)
Q Consensus 621 ~ 621 (1141)
|
T Consensus 112 n 112 (332)
T 2ft3_A 112 N 112 (332)
T ss_dssp S
T ss_pred C
Confidence 5
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.7e-23 Score=235.63 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=86.1
Q ss_pred CCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEe
Q 001145 945 SLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCI 1024 (1141)
Q Consensus 945 ~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 1024 (1141)
++|++|++++|.+.. +|.. .+++|+.|++++|..... ..+..+++|+.|++++|.+....|..+..+++|+.|++
T Consensus 205 ~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 205 IAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp SSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 345555555554332 2221 134555555555544332 24555666666666666666555666666666666666
Q ss_pred cCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1025 LSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1025 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++... | +..+++|+.|++++|+
T Consensus 280 ~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSC
T ss_pred CCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCC
Confidence 666653 34555566677777777777543 5555566677777777777765433 3 4556777777777775
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.1e-22 Score=227.45 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=92.2
Q ss_pred cccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCc
Q 001145 940 EIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTML 1019 (1141)
Q Consensus 940 ~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 1019 (1141)
.+..+++|++|++++|.+.. +|..+ .++|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 34445555555555554332 33322 2556666666655444445556666666666666666655555566666677
Q ss_pred ceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCC------CCCCcCEEeeccCCCcc--ccCCCCCCCCCc
Q 001145 1020 KSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIG------NLSSLTSLTISDCHTII--SLPANLQHLTTL 1091 (1141)
Q Consensus 1020 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~------~l~~L~~L~l~~n~~~~--~lp~~~~~l~~L 1091 (1141)
++|++++|.+. .+|..+..+++|+.|++++|.+.+.-+..+. ..++|+.|++++|++.. ..|..+..+++|
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 77777777664 5666666777777777777765443333332 23677788888887753 345566777788
Q ss_pred ceEeccCC
Q 001145 1092 QHLSIREC 1099 (1141)
Q Consensus 1092 ~~L~l~~c 1099 (1141)
+.+++++|
T Consensus 322 ~~l~L~~N 329 (330)
T 1xku_A 322 AAVQLGNY 329 (330)
T ss_dssp GGEEC---
T ss_pred eEEEeccc
Confidence 88888776
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-23 Score=249.07 Aligned_cols=125 Identities=22% Similarity=0.289 Sum_probs=98.9
Q ss_pred cCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccc-cccccccCceEecCCCcccccch-hhhcCCCCc
Q 001145 513 EAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHS-SISCLISLRYLNMSNTLIERLPE-SICDLVYLQ 590 (1141)
Q Consensus 513 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~ 590 (1141)
.+++++.+++ ..+.+..+++..|..+++|++|+|++|.++.+|. .|+.+++|++|+|++|.+..+|. .++++++|+
T Consensus 49 ~l~~l~~l~l--~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTF--KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEE--SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEe--eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4678899987 6666777777888999999999999999998864 89999999999999999998865 469999999
Q ss_pred EEecCCCCCCcccCcc-ccCCCCCcEEEecCcccccccCcccCCCCCCCcc
Q 001145 591 VLNLSDCHDLIELPKR-LASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTL 640 (1141)
Q Consensus 591 ~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 640 (1141)
+|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 99999986 5567766 5899999999999884333233334444444443
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=6.5e-24 Score=234.39 Aligned_cols=249 Identities=16% Similarity=0.148 Sum_probs=207.5
Q ss_pred CcccEEeeccCcccc--CCC----CCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEE
Q 001145 830 PSLVKLFINKCERLK--NMP----WFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLT 903 (1141)
Q Consensus 830 p~L~~L~i~~c~~L~--~lp----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 903 (1141)
.+++.|+++++.--. .+| .+++|+.|++++++... ...+..+..+++|++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----------------------~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----------------------GPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----------------------SCCCGGGGGCTTCSEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----------------------ccCChhHhcCCCCCEEE
Confidence 467777777764332 233 26677777776422111 11234578889999999
Q ss_pred EecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCC-CcCEEEEccCCCC
Q 001145 904 ISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLT-SLRSLSIENCENL 982 (1141)
Q Consensus 904 L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~-~L~~L~L~~~~~l 982 (1141)
+++|.....+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|...
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 999987778888899999999999999998888888899999999999999998878888888888 9999999998887
Q ss_pred CCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCC
Q 001145 983 AYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIG 1062 (1141)
Q Consensus 983 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~ 1062 (1141)
..+|..+..++ |+.|++++|.+....|..+..+++|+.|++++|.+...+|. +..+++|++|++++|.+.+.+|..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 78888888887 99999999998888888899999999999999998766655 77889999999999998888999999
Q ss_pred CCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcchH
Q 001145 1063 NLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRLE 1103 (1141)
Q Consensus 1063 ~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L~ 1103 (1141)
.+++|+.|++++|++.+.+|.. ..+++|+.|++++|+.+.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 9999999999999999899886 788999999999998653
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.1e-22 Score=225.78 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=185.6
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCC-----
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEG----- 967 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~----- 967 (1141)
+..+++|++|++++|... .+|..+..+++|++|++++|.+. .+|..+..+++|++|+|++|...+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 566899999999999765 88888999999999999999976 77888999999999999999999988886654
Q ss_pred ----CCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCc
Q 001145 968 ----LTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTL 1043 (1141)
Q Consensus 968 ----l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 1043 (1141)
+++|++|++++|... .+|..++.+++|+.|++++|.+.. +|..+..+++|++|++++|++.+.+|..+..+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 999999999997665 788889999999999999999874 56678999999999999999999999999999999
Q ss_pred CeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCC
Q 001145 1044 QSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1044 ~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c 1099 (1141)
+.|++++|+..+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.+++..+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999999999999999999999999999999999999999854
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.1e-21 Score=219.22 Aligned_cols=98 Identities=28% Similarity=0.339 Sum_probs=80.1
Q ss_pred CCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCcccc-ccccccccCceEecCCCccccc-chhhhcCCCCcEEe
Q 001145 516 KLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLH-SSISCLISLRYLNMSNTLIERL-PESICDLVYLQVLN 593 (1141)
Q Consensus 516 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~ 593 (1141)
+++.+++ +.+.+..++... .+.|++|+|++|.++.++ ..++++++|++|++++|.++.+ |..++++++|++|+
T Consensus 34 ~l~~l~~--~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQC--SDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEEC--CSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEEC--CCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 5788887 555565555432 368999999999999885 5899999999999999999988 78899999999999
Q ss_pred cCCCCCCcccCccccCCCCCcEEEecCc
Q 001145 594 LSDCHDLIELPKRLASIFQLRHLMIYGC 621 (1141)
Q Consensus 594 L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 621 (1141)
+++|. +..+|..+. ++|++|++++|
T Consensus 109 L~~n~-l~~l~~~~~--~~L~~L~l~~n 133 (332)
T 2ft3_A 109 ISKNH-LVEIPPNLP--SSLVELRIHDN 133 (332)
T ss_dssp CCSSC-CCSCCSSCC--TTCCEEECCSS
T ss_pred CCCCc-CCccCcccc--ccCCEEECCCC
Confidence 99986 667777665 67788877766
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=5.6e-25 Score=259.23 Aligned_cols=184 Identities=20% Similarity=0.108 Sum_probs=94.0
Q ss_pred CCccEEEEecCCCccc----cccccCCCCccCeeecccccccccc-----cccccCCCCCCEEeEccCCCCcc----ccc
Q 001145 897 PCLTSLTISSCPNLRS----ISSKLGCLVALKSLTIRWCQELIAL-----PQEIQNLSLLESLEISECHSLTV----LPE 963 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~l-----~~~l~~l~~L~~L~Ls~~~~l~~----~~~ 963 (1141)
++|++|++++|..... ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+... ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3444444444433221 2333444455555555555433211 11122455566666666554332 333
Q ss_pred cCCCCCCcCEEEEccCCCCCCc----cccc-CCCCCccEEeecCCCCCcc----cCcCccccCCcceEEecCCCCccccc
Q 001145 964 GIEGLTSLRSLSIENCENLAYI----PRGL-GHLIALEHLTIMYCPSLAF----LPENFRNLTMLKSLCILSCPELASLP 1034 (1141)
Q Consensus 964 ~~~~l~~L~~L~L~~~~~l~~l----~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~ 1034 (1141)
.+..+++|++|++++|...... ...+ ...++|+.|++++|.+... ++..+..+++|++|++++|.+....+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 3444555666666655443221 1111 1224666666666665433 33444555666777776666543322
Q ss_pred c----cCCC-CCCcCeEeeccCCCCc----ccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1035 D----ELQH-VTTLQSLEIHSCPAFK----DLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1035 ~----~l~~-l~~L~~L~l~~n~~~~----~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
. .+.. .++|+.|++++|.+.. .+|..+..+++|+.|++++|++...
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 2 2221 5677777777777654 5666666777777777777766543
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=7.6e-23 Score=225.83 Aligned_cols=188 Identities=17% Similarity=0.164 Sum_probs=164.5
Q ss_pred hhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCC-CCCEEeEccCCCCccccccCCCCCC
Q 001145 892 LLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLS-LLESLEISECHSLTVLPEGIEGLTS 970 (1141)
Q Consensus 892 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~-~L~~L~Ls~~~~l~~~~~~~~~l~~ 970 (1141)
.+..+++|++|++++|.....+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 367788899999999877768888889999999999999998878888888888 999999999998878888887776
Q ss_pred cCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeecc
Q 001145 971 LRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHS 1050 (1141)
Q Consensus 971 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 1050 (1141)
|+.|++++|......|..+..+++|+.|++++|.+....+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 99999999888878888899999999999999988766555 77889999999999999888999999999999999999
Q ss_pred CCCCcccCcCCCCCCCcCEEeeccCCCccccC
Q 001145 1051 CPAFKDLPEWIGNLSSLTSLTISDCHTIISLP 1082 (1141)
Q Consensus 1051 n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp 1082 (1141)
|.+.+.+|.. ..+++|+.|++++|+.....|
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9988888876 889999999999998655434
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=9.4e-22 Score=218.28 Aligned_cols=204 Identities=30% Similarity=0.524 Sum_probs=186.7
Q ss_pred CCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEE
Q 001145 895 NNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSL 974 (1141)
Q Consensus 895 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L 974 (1141)
..+.++.|++++|.. +.+|..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 468899999999874 578888888999999999999977 78888999999999999999876 788889999999999
Q ss_pred EEccCCCCCCcccccCC---------CCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCe
Q 001145 975 SIENCENLAYIPRGLGH---------LIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQS 1045 (1141)
Q Consensus 975 ~L~~~~~l~~l~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1045 (1141)
++++|+..+.+|..+.. +++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 99999999988876654 999999999999887 77888999999999999999986 56778999999999
Q ss_pred EeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcchH
Q 001145 1046 LEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRLE 1103 (1141)
Q Consensus 1046 L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L~ 1103 (1141)
|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|+.+.
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 9999999999999999999999999999999999999999999999999999997654
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=4.8e-24 Score=251.27 Aligned_cols=188 Identities=18% Similarity=0.071 Sum_probs=123.0
Q ss_pred hhhcCCCCccEEEEecCCCcccc-----ccccCCCCccCeeeccccccccc----ccccccCCCCCCEEeEccCCCCccc
Q 001145 891 RLLENNPCLTSLTISSCPNLRSI-----SSKLGCLVALKSLTIRWCQELIA----LPQEIQNLSLLESLEISECHSLTVL 961 (1141)
Q Consensus 891 ~~~~~~~~L~~L~L~~~~~~~~~-----~~~~~~~~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~Ls~~~~l~~~ 961 (1141)
..+..+++|++|++++|...... +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+....
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 33556677777777777533221 12233577888888888876543 4556677888888888888764332
Q ss_pred cc----cC-CCCCCcCEEEEccCCCCCC----cccccCCCCCccEEeecCCCCCcccCcCccc-----cCCcceEEecCC
Q 001145 962 PE----GI-EGLTSLRSLSIENCENLAY----IPRGLGHLIALEHLTIMYCPSLAFLPENFRN-----LTMLKSLCILSC 1027 (1141)
Q Consensus 962 ~~----~~-~~l~~L~~L~L~~~~~l~~----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~L~~n 1027 (1141)
+. .+ ...++|++|++++|..... ++..+..+++|+.|++++|.+....+..+.. .++|++|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 22 11 2346888888888876543 4556677889999999998776543333322 678999999999
Q ss_pred CCcc----cccccCCCCCCcCeEeeccCCCCccc----CcCC-CCCCCcCEEeeccCCCc
Q 001145 1028 PELA----SLPDELQHVTTLQSLEIHSCPAFKDL----PEWI-GNLSSLTSLTISDCHTI 1078 (1141)
Q Consensus 1028 ~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~l----p~~l-~~l~~L~~L~l~~n~~~ 1078 (1141)
.+.. .+|..+..+++|++|++++|++...- ...+ ....+|+.|.+.++...
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 8865 67778888899999999999865431 1111 12345666666555443
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2e-20 Score=209.02 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=166.7
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCc--cccccCCCCCC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLT--VLPEGIEGLTS 970 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~--~~~~~~~~l~~ 970 (1141)
+..+++|++|++++|. ++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hcCCCCCCEEECCCCc-CCccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 5566777777877775 34555443 2789999999999877777778999999999999998753 45667888999
Q ss_pred cCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeecc
Q 001145 971 LRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHS 1050 (1141)
Q Consensus 971 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 1050 (1141)
|++|++++|... .+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 173 L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 173 LSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 999999997655 4565443 8999999999999888888999999999999999999877777888999999999999
Q ss_pred CCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCC------CCCcceEeccCCcc
Q 001145 1051 CPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQH------LTTLQHLSIRECPR 1101 (1141)
Q Consensus 1051 n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~------l~~L~~L~l~~c~~ 1101 (1141)
|.+. .+|.++..+++|+.|++++|++....+..+.. .++|+.|++++||-
T Consensus 250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 9855 88888999999999999999887665555532 47899999999984
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.8e-20 Score=218.96 Aligned_cols=233 Identities=17% Similarity=0.158 Sum_probs=196.4
Q ss_pred ccCCCC--CCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCC
Q 001145 843 LKNMPW--FPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCL 920 (1141)
Q Consensus 843 L~~lp~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 920 (1141)
++.+|. .++++.|++++|..... .+..+..+++|+.|++++|......+..+.++
T Consensus 66 l~~iP~~~~~~l~~L~L~~n~i~~~-----------------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 66 LSEVPQGIPSNTRYLNLMENNIQMI-----------------------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCEE-----------------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cCccCCCCCCCccEEECcCCcCceE-----------------------CHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence 444554 35788888887763221 13447889999999999998766666778999
Q ss_pred CccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccc-ccCCCCCccEEe
Q 001145 921 VALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPR-GLGHLIALEHLT 999 (1141)
Q Consensus 921 ~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~ 999 (1141)
++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|+.|++++|+.+..++. .+..+++|+.|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 9999999999998766666789999999999999997765555788999999999999888887765 588999999999
Q ss_pred ecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1000 IMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1000 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
+++|.+... | .+..+++|+.|+|++|.+.+..|..+.++++|+.|++++|.+....|..+..+++|+.|+|++|.+..
T Consensus 203 L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 203 LGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 999988754 3 57889999999999999988888899999999999999999887778889999999999999998877
Q ss_pred ccCCCCCCCCCcceEeccCCc
Q 001145 1080 SLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1080 ~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
..+..+..+++|+.|++++||
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSC
T ss_pred cChHHhccccCCCEEEccCCC
Confidence 767778889999999999987
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=217.16 Aligned_cols=233 Identities=18% Similarity=0.176 Sum_probs=192.7
Q ss_pred ccCCCC--CCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCC
Q 001145 843 LKNMPW--FPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCL 920 (1141)
Q Consensus 843 L~~lp~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 920 (1141)
++.+|. .++++.|++++|..... .+..+..+++|++|+|++|......+..+.++
T Consensus 55 l~~iP~~~~~~l~~L~L~~n~i~~~-----------------------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 55 LREVPDGISTNTRLLNLHENQIQII-----------------------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp CSSCCSCCCTTCSEEECCSCCCCEE-----------------------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred cCcCCCCCCCCCcEEEccCCcCCee-----------------------CHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence 445554 35788888877763221 12447788999999999998666666778899
Q ss_pred CccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccc-ccCCCCCccEEe
Q 001145 921 VALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPR-GLGHLIALEHLT 999 (1141)
Q Consensus 921 ~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~ 999 (1141)
++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|++++|+.+..++. .+.++++|+.|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 9999999999987766666789999999999999987765555788899999999999888777765 688899999999
Q ss_pred ecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1000 IMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1000 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
+++|.+.. +| .+..+++|+.|+|++|.+....|..+.++++|+.|++++|.+....+..|..+++|+.|+|++|.+..
T Consensus 192 L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 192 LAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 99998764 34 47888999999999999988778889999999999999999887778889999999999999998887
Q ss_pred ccCCCCCCCCCcceEeccCCc
Q 001145 1080 SLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1080 ~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
..+..+..+++|+.|++++||
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSC
T ss_pred cChhHhccccCCCEEEcCCCC
Confidence 777778889999999999987
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.3e-20 Score=208.01 Aligned_cols=209 Identities=22% Similarity=0.198 Sum_probs=174.9
Q ss_pred hhhcCCCCccEEEEecCCCccc--cccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcccc-ccCCC
Q 001145 891 RLLENNPCLTSLTISSCPNLRS--ISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLP-EGIEG 967 (1141)
Q Consensus 891 ~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~~ 967 (1141)
..+..+++|++|++++|..... .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+ ..+..
T Consensus 46 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 124 (306)
T 2z66_A 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124 (306)
T ss_dssp TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTT
T ss_pred hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhh
Confidence 3367889999999998865422 2455667899999999999865 466678889999999999988665443 46788
Q ss_pred CCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCc-ccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeE
Q 001145 968 LTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLA-FLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSL 1046 (1141)
Q Consensus 968 l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 1046 (1141)
+++|++|++++|......+..+..+++|+.|++++|.+.. ..|..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 9999999999988777777788899999999999998876 578888999999999999999887778889999999999
Q ss_pred eeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCC-CcceEeccCCc
Q 001145 1047 EIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLT-TLQHLSIRECP 1100 (1141)
Q Consensus 1047 ~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~-~L~~L~l~~c~ 1100 (1141)
++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|+
T Consensus 205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 9999987766566788899999999999999888888888874 89999999986
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.9e-22 Score=245.79 Aligned_cols=207 Identities=15% Similarity=0.042 Sum_probs=135.6
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeeccc----------cccccc--ccccccCCCCCCEEeEccCCCCcc
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRW----------CQELIA--LPQEIQNLSLLESLEISECHSLTV 960 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~----------~~~~~~--l~~~l~~l~~L~~L~Ls~~~~l~~ 960 (1141)
+..+++|++|+++++.....++.....+++|++|++++ |...+. ++.....+++|++|+++.+.+...
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 56778888888884432233333345678888888884 443332 222345688899999977776554
Q ss_pred ccccCC-CCCCcCEEEEcc---CCCCCC------cccccCCCCCccEEeecCCC--CCcccCcCc-cccCCcceEEecCC
Q 001145 961 LPEGIE-GLTSLRSLSIEN---CENLAY------IPRGLGHLIALEHLTIMYCP--SLAFLPENF-RNLTMLKSLCILSC 1027 (1141)
Q Consensus 961 ~~~~~~-~l~~L~~L~L~~---~~~l~~------l~~~~~~l~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L~L~~n 1027 (1141)
.+..+. .+++|+.|++++ |+..+. ++..+.++++|+.|++++|. +....+..+ ..+++|+.|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 444443 378899998874 344443 23335668899999998765 332222222 34788999999999
Q ss_pred CCcc-cccccCCCCCCcCeEeeccCCCCcc-cCcCCCCCCCcCEEeeccCCCccccCCC-CCCCCCcceEeccCC
Q 001145 1028 PELA-SLPDELQHVTTLQSLEIHSCPAFKD-LPEWIGNLSSLTSLTISDCHTIISLPAN-LQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1028 ~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~-lp~~l~~l~~L~~L~l~~n~~~~~lp~~-~~~l~~L~~L~l~~c 1099 (1141)
.+.. .++..+.++++|+.|++++|++... ++..+..+++|+.|++++|++...-... ...+|.|....+..+
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8765 4455667889999999999985433 3444567899999999999866542222 235677777666554
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=210.93 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=58.9
Q ss_pred CCCcccEEEccCCCCccccccccccccCceEecCCCcccccch-hhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEE
Q 001145 539 SFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPE-SICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLM 617 (1141)
Q Consensus 539 ~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 617 (1141)
.|+...+.+++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|......|..+..+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 34445567888888888887665 478888888888887765 678888888888888764444455577777777777
Q ss_pred ecCc
Q 001145 618 IYGC 621 (1141)
Q Consensus 618 l~~~ 621 (1141)
+++|
T Consensus 107 Ls~n 110 (353)
T 2z80_A 107 LSYN 110 (353)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7766
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=6.4e-20 Score=202.52 Aligned_cols=186 Identities=19% Similarity=0.187 Sum_probs=148.9
Q ss_pred cCCCCccEEEEecCCCccccccccCCCCccCeeeccccccccccc-ccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 894 ENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALP-QEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 894 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
..+++|++|++++|. +..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 75 ~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 75 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp HSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 345677777777765 44566667778888888888888665443 4678888999999998887776677788888999
Q ss_pred EEEEccCCCCC-CcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccC
Q 001145 973 SLSIENCENLA-YIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSC 1051 (1141)
Q Consensus 973 ~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1051 (1141)
+|++++|.... .+|..+..+++|+.|++++|.+....|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 99998877665 46778888899999999999888777888888899999999999887666667888899999999999
Q ss_pred CCCcccCcCCCCCC-CcCEEeeccCCCccc
Q 001145 1052 PAFKDLPEWIGNLS-SLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1052 ~~~~~lp~~l~~l~-~L~~L~l~~n~~~~~ 1080 (1141)
.+.+..|..+..++ +|+.|++++|++...
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 88888888888884 899999999887643
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=3.9e-20 Score=201.83 Aligned_cols=205 Identities=19% Similarity=0.182 Sum_probs=180.2
Q ss_pred CCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCC-CCccccccCCCCCCcCEE
Q 001145 896 NPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECH-SLTVLPEGIEGLTSLRSL 974 (1141)
Q Consensus 896 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~-~l~~~~~~~~~l~~L~~L 974 (1141)
.++|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999988666555678999999999999999877778889999999999999998 444446688899999999
Q ss_pred EEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCC
Q 001145 975 SIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAF 1054 (1141)
Q Consensus 975 ~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1054 (1141)
++++|......+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99998888777778899999999999999998777777899999999999999987665667889999999999999988
Q ss_pred cccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1055 KDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1055 ~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++||
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 8778999999999999999998887666668889999999999996
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=209.00 Aligned_cols=205 Identities=19% Similarity=0.193 Sum_probs=99.4
Q ss_pred CCCCccEEEEecCCCccccccccCCCCccCeeeccccccccccc-ccccCCCCCCEEeEccCCCCccc-cccCCCCCCcC
Q 001145 895 NNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALP-QEIQNLSLLESLEISECHSLTVL-PEGIEGLTSLR 972 (1141)
Q Consensus 895 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~Ls~~~~l~~~-~~~~~~l~~L~ 972 (1141)
.+++|++|++++|......+..+..+++|++|++++|.+....+ ..+..+++|++|++++|...+.+ +..+.++++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 33444444444443322222224455555555555555432221 23455555555555555322222 23445555555
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccC---CCCCCcCeEeec
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDEL---QHVTTLQSLEIH 1049 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~ 1049 (1141)
+|++++|......|..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+..+..+ ...+.++.++++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 55555555444444455555555555555555432222223345555555555555543322221 123455556665
Q ss_pred cCCCCc----ccCcCCCCCCCcCEEeeccCCCccccCCC-CCCCCCcceEeccCCc
Q 001145 1050 SCPAFK----DLPEWIGNLSSLTSLTISDCHTIISLPAN-LQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1050 ~n~~~~----~lp~~l~~l~~L~~L~l~~n~~~~~lp~~-~~~l~~L~~L~l~~c~ 1100 (1141)
++.+.+ .+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|+
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 555433 24555556666666666666554 44443 3556666666666664
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=2.5e-19 Score=209.37 Aligned_cols=183 Identities=19% Similarity=0.198 Sum_probs=100.5
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc-cCCCCCCc
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE-GIEGLTSL 971 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l~~L 971 (1141)
+..+++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|..++.++. .+.++++|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 33445555555555543333333355555556666655554443344455566666666665554554444 35555666
Q ss_pred CEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccC
Q 001145 972 RSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSC 1051 (1141)
Q Consensus 972 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1051 (1141)
++|++++|... .+| .+..+++|+.|++++|.+....|..+.++++|+.|++++|.+....+..+.++++|+.|+|++|
T Consensus 199 ~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 199 KYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 66666664433 233 3555566666666666665555555666666666666666665555555566666666666666
Q ss_pred CCCcccCcCCCCCCCcCEEeeccCCC
Q 001145 1052 PAFKDLPEWIGNLSSLTSLTISDCHT 1077 (1141)
Q Consensus 1052 ~~~~~lp~~l~~l~~L~~L~l~~n~~ 1077 (1141)
.+.+..+..+..+++|+.|++++|+.
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCCccChHHhccccCCCEEEccCCCc
Confidence 55443344455566666666666553
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2.7e-19 Score=208.20 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=105.8
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc-cCCCCCCc
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE-GIEGLTSL 971 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l~~L 971 (1141)
+..+++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|+|++|..+..++. .+.++++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 44455555555555543332233455566666666666665544444556666666666666555554444 45556666
Q ss_pred CEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccC
Q 001145 972 RSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSC 1051 (1141)
Q Consensus 972 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1051 (1141)
++|++++|... .+| .+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....+..+.++++|+.|+|++|
T Consensus 188 ~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 66666665433 334 3556666666666666666555666666666666666666665555555666666666666666
Q ss_pred CCCcccCcCCCCCCCcCEEeeccCCC
Q 001145 1052 PAFKDLPEWIGNLSSLTSLTISDCHT 1077 (1141)
Q Consensus 1052 ~~~~~lp~~l~~l~~L~~L~l~~n~~ 1077 (1141)
.+....+..+..+++|+.|+|++|+.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCccChhHhccccCCCEEEcCCCCc
Confidence 65544445556666666666666654
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.1e-19 Score=198.08 Aligned_cols=190 Identities=19% Similarity=0.150 Sum_probs=157.0
Q ss_pred hhhcCCCCccEEEEecCCCccccccccCCCCccCeeeccccc-ccccccccccCCCCCCEEeEccCCCCccccccCCCCC
Q 001145 891 RLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQ-ELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLT 969 (1141)
Q Consensus 891 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~ 969 (1141)
..+..+++|++|++++|......+..+..+++|++|++++|. +....|..+..+++|++|++++|.+....+..+..++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 346778899999999987666557778889999999999997 4444467788899999999999987776677788899
Q ss_pred CcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeec
Q 001145 970 SLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIH 1049 (1141)
Q Consensus 970 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1049 (1141)
+|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 99999999987766555568889999999999998876666678889999999999999887778888899999999999
Q ss_pred cCCCCcccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1050 SCPAFKDLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1050 ~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
+|.+.+..+..+..+++|+.|++++|++...
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 9887665556688899999999999887644
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.4e-21 Score=238.27 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=53.2
Q ss_pred CCCcccEEEccCCCCccc-ccccccc--ccCceEecCCCc-cc--ccchhhhcCCCCcEEecCCCCCCcc----cCcccc
Q 001145 539 SFRYLRTLNLSGSGIKKL-HSSISCL--ISLRYLNMSNTL-IE--RLPESICDLVYLQVLNLSDCHDLIE----LPKRLA 608 (1141)
Q Consensus 539 ~l~~Lr~L~L~~~~l~~l-p~~i~~L--~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~ 608 (1141)
.+++|++|+|++|.++.. +..++.. .+|++|+|++|. +. .++..+.++++|++|+|++|..... ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 678888888888876532 3344443 348888888775 22 3344455778888888888753222 333445
Q ss_pred CCCCCcEEEecCc
Q 001145 609 SIFQLRHLMIYGC 621 (1141)
Q Consensus 609 ~L~~L~~L~l~~~ 621 (1141)
.+++|++|++++|
T Consensus 190 ~~~~L~~L~L~~n 202 (592)
T 3ogk_B 190 HNTSLEVLNFYMT 202 (592)
T ss_dssp HCCCCCEEECTTC
T ss_pred cCCCccEEEeecc
Confidence 6777888887766
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.1e-18 Score=208.14 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=50.9
Q ss_pred cccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEecCCCCCCcccCccccCCCCCcEEEecCc
Q 001145 542 YLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGC 621 (1141)
Q Consensus 542 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 621 (1141)
.+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence 46777777777777777665 677777777777777776 46777777777765 556665 5677777777766
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.6e-18 Score=206.81 Aligned_cols=98 Identities=26% Similarity=0.286 Sum_probs=76.4
Q ss_pred CCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhhhcCCCCcEEec
Q 001145 515 KKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNL 594 (1141)
Q Consensus 515 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 594 (1141)
.++++|++ +.+.+..++...+ ++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 40 ~~l~~L~l--s~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNV--GESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEEC--CSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEe--cCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 35778887 6666665554432 789999999999999887 57899999999999999987 7889999999
Q ss_pred CCCCCCcccCccccCCCCCcEEEecCcccccccC
Q 001145 595 SDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFP 628 (1141)
Q Consensus 595 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 628 (1141)
++|. +..+|. .+++|++|++++| .+..+|
T Consensus 109 s~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp 137 (622)
T 3g06_A 109 FSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLP 137 (622)
T ss_dssp CSCC-CCCCCC---CCTTCCEEECCSS-CCSCCC
T ss_pred cCCc-CCCCCC---CCCCcCEEECCCC-CCCcCC
Confidence 9976 666776 5688889988887 343333
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.3e-21 Score=238.77 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=38.6
Q ss_pred CCCcccEEEccCCCCccc-ccccc-ccccCceEecCCC-cccc--cchhhhcCCCCcEEecCCCCCCcc----cCccccC
Q 001145 539 SFRYLRTLNLSGSGIKKL-HSSIS-CLISLRYLNMSNT-LIER--LPESICDLVYLQVLNLSDCHDLIE----LPKRLAS 609 (1141)
Q Consensus 539 ~l~~Lr~L~L~~~~l~~l-p~~i~-~L~~L~~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~ 609 (1141)
.+++|+.|+|++|.++.. +..+. .+++|++|+|++| .+.. ++..+.++++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 445555555555554421 22232 4555555555555 3333 334444555555555555541111 2222224
Q ss_pred CCCCcEEEecCc
Q 001145 610 IFQLRHLMIYGC 621 (1141)
Q Consensus 610 L~~L~~L~l~~~ 621 (1141)
+++|++|++++|
T Consensus 183 ~~~L~~L~l~~~ 194 (594)
T 2p1m_B 183 YTSLVSLNISCL 194 (594)
T ss_dssp CCCCCEEECTTC
T ss_pred CCcCcEEEeccc
Confidence 445555555554
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=3.6e-20 Score=204.59 Aligned_cols=200 Identities=18% Similarity=0.144 Sum_probs=168.6
Q ss_pred CCCCccEEEEecCCCcccccccc--CCCCccCeeecccccccccccccccCC-----CCCCEEeEccCCCCccccccCCC
Q 001145 895 NNPCLTSLTISSCPNLRSISSKL--GCLVALKSLTIRWCQELIALPQEIQNL-----SLLESLEISECHSLTVLPEGIEG 967 (1141)
Q Consensus 895 ~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~l~~~l~~l-----~~L~~L~Ls~~~~l~~~~~~~~~ 967 (1141)
.+++|++|++++|.....+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 68999999999998877888775 8999999999999998776 6666665 99999999999988777788999
Q ss_pred CCCcCEEEEccCCCCCC--ccccc--CCCCCccEEeecCCCCCcc---cCcCccccCCcceEEecCCCCccccc-ccCCC
Q 001145 968 LTSLRSLSIENCENLAY--IPRGL--GHLIALEHLTIMYCPSLAF---LPENFRNLTMLKSLCILSCPELASLP-DELQH 1039 (1141)
Q Consensus 968 l~~L~~L~L~~~~~l~~--l~~~~--~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~ 1039 (1141)
+++|++|++++|...+. ++..+ ..+++|+.|++++|.+... ....+..+++|+.|++++|.+.+..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 99999999999887654 33344 8899999999999988732 22334578999999999999987664 45667
Q ss_pred CCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1040 VTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1040 l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+++|+.|++++|.+. .+|..+. ++|+.|++++|.+.+. |. +..+++|+.|++++|+
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence 899999999999865 7888776 8999999999987665 76 8899999999999995
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.5e-18 Score=185.40 Aligned_cols=200 Identities=18% Similarity=0.158 Sum_probs=161.4
Q ss_pred CccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEc
Q 001145 898 CLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIE 977 (1141)
Q Consensus 898 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~ 977 (1141)
..+.++++++. ++.+|..+ .++++.|++++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCC-CCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46778888765 45566543 3678999999998776666678899999999999988665444456788999999999
Q ss_pred cCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCccc
Q 001145 978 NCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDL 1057 (1141)
Q Consensus 978 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~l 1057 (1141)
+|......+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 98776655556788999999999999888777778889999999999999886655556888999999999998876655
Q ss_pred CcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1058 PEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1058 p~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+..+..+++|+.|++++|.+....+..+..+++|+.|++++||
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 5668889999999999998776656667888999999999886
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2e-18 Score=187.15 Aligned_cols=203 Identities=22% Similarity=0.197 Sum_probs=164.1
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSI 976 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L 976 (1141)
++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56899999998765555557888999999999999877666667889999999999999877766677888999999999
Q ss_pred ccCCCCCCcccccCCCCCccEEeecCCCCCcc-cCcCccccCCcceEEecCCCCcccccccCCCCCCcC----eEeeccC
Q 001145 977 ENCENLAYIPRGLGHLIALEHLTIMYCPSLAF-LPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQ----SLEIHSC 1051 (1141)
Q Consensus 977 ~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~l~~n 1051 (1141)
++|......+..++.+++|+.|++++|.+... +|..+..+++|++|++++|.+....+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99877666555788999999999999988764 588889999999999999998776666666666666 8999998
Q ss_pred CCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1052 PAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1052 ~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
.+.. ++.......+|+.|++++|.+.+..+..+..+++|+.|++++||
T Consensus 188 ~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 188 PMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 8654 44444455689999999998776655667889999999999764
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1e-19 Score=201.40 Aligned_cols=152 Identities=9% Similarity=0.053 Sum_probs=69.5
Q ss_pred CCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccC-CCCCCcCEEEEccCCCCCCcccccCCCCCccEE
Q 001145 920 LVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGI-EGLTSLRSLSIENCENLAYIPRGLGHLIALEHL 998 (1141)
Q Consensus 920 ~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~-~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 998 (1141)
+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.... ++ ....+++|+.|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE-CCCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cc-cccccccCCEE
Confidence 3445555555555444444444555555555555555444333332 234555555555543322 22 22234455555
Q ss_pred eecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCC-cccCcCCCCCCCcCEEeeccC
Q 001145 999 TIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAF-KDLPEWIGNLSSLTSLTISDC 1075 (1141)
Q Consensus 999 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~lp~~l~~l~~L~~L~l~~n 1075 (1141)
++++|.+... |..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +.+|.++..+++|+.|++++|
T Consensus 197 ~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 5555544422 222444444555555444442 33444444445555555554443 333444444444444444433
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=7.2e-18 Score=183.20 Aligned_cols=201 Identities=14% Similarity=0.104 Sum_probs=169.8
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++++.++++++. ++.+|..+ .++++.|++++|.+.+..+..+..+++|++|+|++|.+.. ++. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCC
T ss_pred ccccCCccEEECCCCC-CCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCC
Confidence 5677889999999875 55676554 3789999999999887777889999999999999998655 444 36789999
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
+|++++|... .+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999997654 678788899999999999999987777889999999999999999976666677889999999999998
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++||
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 76544456788999999999998775 778888888899999999987
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=6.4e-21 Score=232.56 Aligned_cols=207 Identities=17% Similarity=0.088 Sum_probs=131.8
Q ss_pred hhcCCCCccEEEEecCCCccccccccCCCCccCeeecccc---------ccccc-ccccccCCCCCCEEeEccCCCCccc
Q 001145 892 LLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWC---------QELIA-LPQEIQNLSLLESLEISECHSLTVL 961 (1141)
Q Consensus 892 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~---------~~~~~-l~~~l~~l~~L~~L~Ls~~~~l~~~ 961 (1141)
.+..+++|++|++++|.....++.....+++|++|++.+| .+... +......+++|++|.++.+.+....
T Consensus 309 ~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred HHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 3567899999999988221222222345889999998442 22211 1111234889999988777765544
Q ss_pred cccC-CCCCCcCEEEEc-----cCCCCCCcc------cccCCCCCccEEeecCCCCCcccCcCcc-ccCCcceEEecCCC
Q 001145 962 PEGI-EGLTSLRSLSIE-----NCENLAYIP------RGLGHLIALEHLTIMYCPSLAFLPENFR-NLTMLKSLCILSCP 1028 (1141)
Q Consensus 962 ~~~~-~~l~~L~~L~L~-----~~~~l~~l~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~ 1028 (1141)
+..+ ..+++|+.|+++ +|+..+..| ..+..+++|+.|++++ .+....+..+. .+++|+.|++++|.
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 3333 257899999998 455555322 2356788999999976 44433333333 37889999999998
Q ss_pred CcccccccC-CCCCCcCeEeeccCCCCcccC-cCCCCCCCcCEEeeccCCCccccCCCC-CCCCCcceEeccCC
Q 001145 1029 ELASLPDEL-QHVTTLQSLEIHSCPAFKDLP-EWIGNLSSLTSLTISDCHTIISLPANL-QHLTTLQHLSIREC 1099 (1141)
Q Consensus 1029 ~~~~~~~~l-~~l~~L~~L~l~~n~~~~~lp-~~l~~l~~L~~L~l~~n~~~~~lp~~~-~~l~~L~~L~l~~c 1099 (1141)
+.......+ .++++|+.|++++|.+....+ ..+..+++|+.|++++|+........+ ..+|.|+...+.++
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 755433333 568899999999998744332 344568899999999998743322222 34567766665544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=5.6e-18 Score=182.79 Aligned_cols=189 Identities=17% Similarity=0.112 Sum_probs=139.6
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++|++|++++|.... ++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 5567788888888876433 33 567788888888888887666666677888888888888876665555677788888
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
+|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 88888876665555556778888888888888776666667778888888888888776666667778888888888876
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCC
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTT 1090 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~ 1090 (1141)
+. +.+++|+.|+++.|.+.+.+|..+..++.
T Consensus 217 ~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 217 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp BC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 54 34567788888888888888877665544
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.7e-19 Score=199.15 Aligned_cols=180 Identities=17% Similarity=0.150 Sum_probs=140.5
Q ss_pred cCCCCccEEEEecCCCccccccccCCC-----CccCeeecccccccccccccccCCCCCCEEeEccCCCCcc--ccccC-
Q 001145 894 ENNPCLTSLTISSCPNLRSISSKLGCL-----VALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTV--LPEGI- 965 (1141)
Q Consensus 894 ~~~~~L~~L~L~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~--~~~~~- 965 (1141)
..+++|++|++++|..... |..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|++.+. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5677888888888765444 5555554 8899999999988777777888999999999999987654 23333
Q ss_pred -CCCCCcCEEEEccCCCCC--Ccc-cccCCCCCccEEeecCCCCCcccC-cCccccCCcceEEecCCCCcccccccCCCC
Q 001145 966 -EGLTSLRSLSIENCENLA--YIP-RGLGHLIALEHLTIMYCPSLAFLP-ENFRNLTMLKSLCILSCPELASLPDELQHV 1040 (1141)
Q Consensus 966 -~~l~~L~~L~L~~~~~l~--~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 1040 (1141)
..+++|++|++++|.... .++ ..+..+++|+.|++++|.+....| ..+..+++|+.|++++|.+. .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 788999999999976652 222 234578899999999998877664 45667899999999999986 7777776
Q ss_pred CCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1041 TTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1041 ~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
++|+.|++++|.+.+. |. +..+++|+.|++++|++.+
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999986554 66 8899999999999998764
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=9.2e-19 Score=205.21 Aligned_cols=170 Identities=10% Similarity=0.057 Sum_probs=102.0
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCC-CCCCcCEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIE-GLTSLRSLS 975 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~-~l~~L~~L~ 975 (1141)
++|+.|++++|......+ ..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+..|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 456666666665433322 2356677777777776666666666677777777777776665555443 566777777
Q ss_pred EccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCC-
Q 001145 976 IENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAF- 1054 (1141)
Q Consensus 976 L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~- 1054 (1141)
+++|..... + ....+++|+.|++++|.+... |..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.
T Consensus 176 Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 176 LQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcC
Confidence 777654432 2 233466666666666665543 333556666666666666654 35555666666666666666654
Q ss_pred cccCcCCCCCCCcCEEeec
Q 001145 1055 KDLPEWIGNLSSLTSLTIS 1073 (1141)
Q Consensus 1055 ~~lp~~l~~l~~L~~L~l~ 1073 (1141)
+.+|.++..+++|+.|++.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 3445555566666666554
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.4e-18 Score=199.38 Aligned_cols=198 Identities=13% Similarity=0.053 Sum_probs=148.7
Q ss_pred hhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCC
Q 001145 891 RLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTS 970 (1141)
Q Consensus 891 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~ 970 (1141)
..+..+++|++|+|++|......| +..+++|++|++++|.+.+.. ..++|++|++++|.+....+. .+++
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~ 121 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQG 121 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSS
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCC
Confidence 447778888888888887555444 778888888888888755432 237888888888887664443 3578
Q ss_pred cCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCcc-ccCCcceEEecCCCCcccccccCCCCCCcCeEeec
Q 001145 971 LRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFR-NLTMLKSLCILSCPELASLPDELQHVTTLQSLEIH 1049 (1141)
Q Consensus 971 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1049 (1141)
|+.|++++|......|..++.+++|+.|++++|.+....|..+. .+++|+.|+|++|.+.+. |. ...+++|+.|+++
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls 199 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence 88888888877776677778888888888888888776776665 688888888888887554 32 3357888888888
Q ss_pred cCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcch
Q 001145 1050 SCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRL 1102 (1141)
Q Consensus 1050 ~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L 1102 (1141)
+|.+.+ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+-.
T Consensus 200 ~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 200 SNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 887554 55557788888888888887664 6777778888888888888643
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.4e-17 Score=180.51 Aligned_cols=188 Identities=18% Similarity=0.108 Sum_probs=158.7
Q ss_pred hhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCc
Q 001145 892 LLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSL 971 (1141)
Q Consensus 892 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L 971 (1141)
.+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 47788999999999997665555578999999999999999887777889999999999999999777666578899999
Q ss_pred CEEEEccCCCCC-CcccccCCCCCccEEeecCCCCCcccCcCccccCCcc----eEEecCCCCcccccccCCCCCCcCeE
Q 001145 972 RSLSIENCENLA-YIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLK----SLCILSCPELASLPDELQHVTTLQSL 1046 (1141)
Q Consensus 972 ~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L 1046 (1141)
++|++++|.... .+|..+..+++|+.|++++|.+....+..+..+++|+ +|++++|.+... +.......+|+.|
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L 205 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKEL 205 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEE
Confidence 999999988765 3688999999999999999999877777787777777 899999998654 4444455689999
Q ss_pred eeccCCCCcccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1047 EIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1047 ~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 9999997655556678999999999999987643
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=5.7e-18 Score=187.37 Aligned_cols=238 Identities=11% Similarity=0.018 Sum_probs=101.1
Q ss_pred CCCCeEEEeccCcchh--cccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeee
Q 001145 850 PSLQHLEFRNCNEMIM--KSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLT 927 (1141)
Q Consensus 850 ~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 927 (1141)
++|+.|++++|..... ..+..++.|+.|.+.++...... .+..+++|++|++++|. ++.++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence 4555555555543221 12233344444444333221110 13444445555554443 12221 124444555
Q ss_pred cccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccccc-CCCCCccEEeecCCCCC
Q 001145 928 IRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGL-GHLIALEHLTIMYCPSL 1006 (1141)
Q Consensus 928 L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~ 1006 (1141)
+++|.+.+..+ ..+++|++|++++|.+....+..+..+++|++|++++|......+..+ ..+++|+.|++++|.+.
T Consensus 106 l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 55444333222 123445555555554444333344444455555555544433333332 23445555555554443
Q ss_pred cccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCc-cccCCCC
Q 001145 1007 AFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTI-ISLPANL 1085 (1141)
Q Consensus 1007 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~-~~lp~~~ 1085 (1141)
.. + ....+++|++|++++|.+.. +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. ..+|..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 32 1 11124445555555554432 2233444455555555554432 34444444555555555555444 3344444
Q ss_pred CCCCCcceEeccCCcch
Q 001145 1086 QHLTTLQHLSIRECPRL 1102 (1141)
Q Consensus 1086 ~~l~~L~~L~l~~c~~L 1102 (1141)
..+++|+.|++.+|+.+
T Consensus 259 ~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred hccccceEEECCCchhc
Confidence 44444555555444433
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=5.6e-17 Score=174.83 Aligned_cols=184 Identities=17% Similarity=0.120 Sum_probs=157.5
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSI 976 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L 976 (1141)
++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 57999999998765555557899999999999999977655556789999999999999977655567788999999999
Q ss_pred ccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcc
Q 001145 977 ENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKD 1056 (1141)
Q Consensus 977 ~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1056 (1141)
++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99888777677789999999999999998877777789999999999999998776666788999999999999987655
Q ss_pred cCcCCCCCCCcCEEeeccCCCccc
Q 001145 1057 LPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1057 lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
.+..+..+++|+.|++++|+....
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 556688999999999999987543
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=2.8e-17 Score=173.72 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=159.3
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeeccccc-ccccccccccCCCCCCEEeEcc-CCCCccccccCCCCCCcCEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQ-ELIALPQEIQNLSLLESLEISE-CHSLTVLPEGIEGLTSLRSL 974 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~l~~~l~~l~~L~~L~Ls~-~~~l~~~~~~~~~l~~L~~L 974 (1141)
++|+.|++++|......+..+..+++|++|++++|. +....+..+..+++|++|++++ |.+....+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999987655555578899999999999997 5555555789999999999998 77655444577889999999
Q ss_pred EEccCCCCCCcccccCCCCCcc---EEeecCC-CCCcccCcCccccCCcc-eEEecCCCCcccccccCCCCCCcCeEeec
Q 001145 975 SIENCENLAYIPRGLGHLIALE---HLTIMYC-PSLAFLPENFRNLTMLK-SLCILSCPELASLPDELQHVTTLQSLEIH 1049 (1141)
Q Consensus 975 ~L~~~~~l~~l~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1049 (1141)
++++|.... +|. +..+++|+ .|++++| .+....+..+..+++|+ .|++++|.+. .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999977654 675 88888888 9999999 66666666789999999 9999999986 666554444899999999
Q ss_pred cCCCCccc-CcCCCCC-CCcCEEeeccCCCccccCCCCCCCCCcceEeccCCcch
Q 001145 1050 SCPAFKDL-PEWIGNL-SSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECPRL 1102 (1141)
Q Consensus 1050 ~n~~~~~l-p~~l~~l-~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~~L 1102 (1141)
+|..++.+ +..+..+ ++|+.|++++|++. .+|.. .+++|+.|++.+|+.|
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC---
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCccCC
Confidence 99634444 5678889 99999999998876 45544 6789999999998754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2.6e-17 Score=177.63 Aligned_cols=196 Identities=14% Similarity=0.072 Sum_probs=160.4
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
...+++|+.|++++|.. +.++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCc-cccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44568899999998863 4443 46788999999999998765 3 3688899999999999987766666678899999
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
+|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999988776666668899999999999998887777778889999999999999876666667889999999999998
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCC
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c 1099 (1141)
+.+..|..+..+++|+.|++++|++... +++|+.|+++.|
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n 232 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN 232 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHH
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHH
Confidence 8776667788999999999999977644 456777877765
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=180.98 Aligned_cols=199 Identities=17% Similarity=0.126 Sum_probs=165.0
Q ss_pred CCCccEEEEecCCCcccccccc--CCCCccCeeeccccccccccc----ccccCCCCCCEEeEccCCCCccccccCCCCC
Q 001145 896 NPCLTSLTISSCPNLRSISSKL--GCLVALKSLTIRWCQELIALP----QEIQNLSLLESLEISECHSLTVLPEGIEGLT 969 (1141)
Q Consensus 896 ~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~l~----~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~ 969 (1141)
+++|++|++++|......|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|+|++|.+....+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4679999999998888888777 889999999999999876544 3356799999999999998777777889999
Q ss_pred CcCEEEEccCCCCCC--cc--cccCCCCCccEEeecCCCCCcccCc----CccccCCcceEEecCCCCcccccccCCCC-
Q 001145 970 SLRSLSIENCENLAY--IP--RGLGHLIALEHLTIMYCPSLAFLPE----NFRNLTMLKSLCILSCPELASLPDELQHV- 1040 (1141)
Q Consensus 970 ~L~~L~L~~~~~l~~--l~--~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~~~~l~~l- 1040 (1141)
+|++|++++|..... ++ ..+..+++|+.|++++|.+.. ++. .+..+++|++|++++|.+....|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999886542 22 234789999999999998853 222 24678999999999999988778777776
Q ss_pred --CCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1041 --TTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1041 --~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
++|+.|++++|.+. .+|..+. ++|+.|++++|.+.+. |. +..+++|+.|++++|+
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence 69999999999866 7787664 8999999999988753 44 5778999999999996
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.2e-16 Score=168.87 Aligned_cols=208 Identities=19% Similarity=0.225 Sum_probs=161.8
Q ss_pred CccccCCCCCC-CCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCcccccc-cc
Q 001145 840 CERLKNMPWFP-SLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISS-KL 917 (1141)
Q Consensus 840 c~~L~~lp~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~ 917 (1141)
|..++.+|.++ +|+.|+++++..... .+..+..+++|++|++++|..++.++. .+
T Consensus 20 c~~l~~ip~~~~~l~~L~l~~n~l~~i-----------------------~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f 76 (239)
T 2xwt_C 20 CKDIQRIPSLPPSTQTLKLIETHLRTI-----------------------PSHAFSNLPNISRIYVSIDVTLQQLESHSF 76 (239)
T ss_dssp ECSCSSCCCCCTTCCEEEEESCCCSEE-----------------------CTTTTTTCTTCCEEEEECCSSCCEECTTTE
T ss_pred ccCccccCCCCCcccEEEEeCCcceEE-----------------------CHHHccCCCCCcEEeCCCCCCcceeCHhHc
Confidence 44456666543 789999988764321 123477899999999999974555554 68
Q ss_pred CCCCccCeeeccc-ccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC---EEEEccCCCCCCcc-cccCCC
Q 001145 918 GCLVALKSLTIRW-CQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR---SLSIENCENLAYIP-RGLGHL 992 (1141)
Q Consensus 918 ~~~~~L~~L~L~~-~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~---~L~L~~~~~l~~l~-~~~~~l 992 (1141)
..+++|++|++++ |.+....+..+..+++|++|++++|.+.+ +|. +..+++|+ +|++++|..+..++ ..+..+
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccch
Confidence 8999999999999 77665555678999999999999998665 676 78888888 99999984444554 468899
Q ss_pred CCcc-EEeecCCCCCcccCcCccccCCcceEEecCCC-CcccccccCCCC-CCcCeEeeccCCCCcccCcCCCCCCCcCE
Q 001145 993 IALE-HLTIMYCPSLAFLPENFRNLTMLKSLCILSCP-ELASLPDELQHV-TTLQSLEIHSCPAFKDLPEWIGNLSSLTS 1069 (1141)
Q Consensus 993 ~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~lp~~l~~l~~L~~ 1069 (1141)
++|+ .|++++|.+....+..+.. ++|+.|++++|+ +....+..+..+ ++|+.|++++|.+. .+|.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCce
Confidence 9999 9999999987444444555 899999999996 654445678888 99999999998865 56654 6889999
Q ss_pred EeeccCC
Q 001145 1070 LTISDCH 1076 (1141)
Q Consensus 1070 L~l~~n~ 1076 (1141)
|++++|.
T Consensus 231 L~l~~~~ 237 (239)
T 2xwt_C 231 LIARNTW 237 (239)
T ss_dssp EECTTC-
T ss_pred eeccCcc
Confidence 9998875
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=1.8e-16 Score=172.21 Aligned_cols=179 Identities=15% Similarity=0.034 Sum_probs=152.7
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSI 976 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L 976 (1141)
++++.|++++|......+..+..+++|+.|++++|.+... +. ...+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 6789999999987766677789999999999999997654 33 378999999999999865 57777888999999999
Q ss_pred ccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcc
Q 001145 977 ENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKD 1056 (1141)
Q Consensus 977 ~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1056 (1141)
++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+ ..
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YT 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC-CC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC-Cc
Confidence 99877766667889999999999999999877777788999999999999998755555678899999999999885 47
Q ss_pred cCcCCCCCCCcCEEeeccCCCcc
Q 001145 1057 LPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1057 lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
+|..+..+++|+.|++++|+...
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCC
T ss_pred cChhhcccccCCeEEeCCCCccC
Confidence 88888888999999999998753
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.4e-16 Score=167.77 Aligned_cols=180 Identities=17% Similarity=0.118 Sum_probs=123.8
Q ss_pred CccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEc
Q 001145 898 CLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIE 977 (1141)
Q Consensus 898 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~ 977 (1141)
..+.++++++. ++.+|..+. ++++.|++++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45677777654 455655433 577778888777766666667777788888888777666555566777777777777
Q ss_pred cCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCccc
Q 001145 978 NCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDL 1057 (1141)
Q Consensus 978 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~l 1057 (1141)
+|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 76666555556677777777777777776555555667777777777777765544456667777777777777765555
Q ss_pred CcCCCCCCCcCEEeeccCCCccc
Q 001145 1058 PEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1058 p~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
+..+..+++|+.|++++|++...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 55667777777777777766544
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.7e-16 Score=167.35 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=145.5
Q ss_pred CccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEee
Q 001145 921 VALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTI 1000 (1141)
Q Consensus 921 ~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 1000 (1141)
.+.+.++++++.+. .+|..+. ++|+.|+|++|.+....+..+.++++|++|++++|......+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888887744 5555443 68999999999887766667888999999999998777766767888999999999
Q ss_pred cCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1001 MYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1001 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99998877777888899999999999988765556678889999999999887655555788899999999999988877
Q ss_pred cCCCCCCCCCcceEeccCCc
Q 001145 1081 LPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1081 lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
.+..+..+++|+.|++++|+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHHhCCCCCCEEEeeCCc
Confidence 77778888999999999886
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.8e-16 Score=174.03 Aligned_cols=190 Identities=19% Similarity=0.243 Sum_probs=106.4
Q ss_pred CCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEE
Q 001145 895 NNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSL 974 (1141)
Q Consensus 895 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L 974 (1141)
.+++|++|++++|. +..++ .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.. ++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 34556666666654 23333 35556666666666665443322 5666666666666665433 33 35556666666
Q ss_pred EEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCC
Q 001145 975 SIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAF 1054 (1141)
Q Consensus 975 ~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1054 (1141)
++++|.... ++ .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 666655433 33 25666666666666665544322 5566666666666665543 222 556666666666666543
Q ss_pred cccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1055 KDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1055 ~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+ ++. +..+++|+.|++++|.+.+..| +..+++|+.|++++|+
T Consensus 187 ~-~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 D-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228 (308)
T ss_dssp C-CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEE
T ss_pred c-Chh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCe
Confidence 3 222 5566666666666665544332 5556666666666664
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=6e-18 Score=193.32 Aligned_cols=209 Identities=14% Similarity=0.064 Sum_probs=138.4
Q ss_pred hhcCCCCccEEEEecCCCc---cccccc-------cCCCCccCeeecccccccc----cccccccCCCCCCEEeEccCCC
Q 001145 892 LLENNPCLTSLTISSCPNL---RSISSK-------LGCLVALKSLTIRWCQELI----ALPQEIQNLSLLESLEISECHS 957 (1141)
Q Consensus 892 ~~~~~~~L~~L~L~~~~~~---~~~~~~-------~~~~~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~Ls~~~~ 957 (1141)
.+..+++|++|++++|... ..+|.. +..+++|++|++++|.+.. .+|..+..+++|++|+|++|.+
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 3566777888888776321 223333 3567788888888877665 3555677778888888888776
Q ss_pred Cccccc----cCCCC---------CCcCEEEEccCCCC-CCcc---cccCCCCCccEEeecCCCCCc-----ccCcCccc
Q 001145 958 LTVLPE----GIEGL---------TSLRSLSIENCENL-AYIP---RGLGHLIALEHLTIMYCPSLA-----FLPENFRN 1015 (1141)
Q Consensus 958 l~~~~~----~~~~l---------~~L~~L~L~~~~~l-~~l~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~ 1015 (1141)
....+. .+..+ ++|++|++++|... ..++ ..+..+++|+.|++++|.+.. ..+..+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 432222 22223 77888888877665 2333 355667788888888877652 23336677
Q ss_pred cCCcceEEecCCCCc----ccccccCCCCCCcCeEeeccCCCCcc----cCcCC--CCCCCcCEEeeccCCCcc----cc
Q 001145 1016 LTMLKSLCILSCPEL----ASLPDELQHVTTLQSLEIHSCPAFKD----LPEWI--GNLSSLTSLTISDCHTII----SL 1081 (1141)
Q Consensus 1016 l~~L~~L~L~~n~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~----lp~~l--~~l~~L~~L~l~~n~~~~----~l 1081 (1141)
+++|+.|+|++|.+. ..+|..+..+++|+.|+|++|.+... +|..+ +.+++|+.|+|++|.+.. .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 778888888888774 45666777778888888888776544 45555 347788888888877766 36
Q ss_pred CCCC-CCCCCcceEeccCCc
Q 001145 1082 PANL-QHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1082 p~~~-~~l~~L~~L~l~~c~ 1100 (1141)
|..+ .++++|+.|++++|+
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhcCCCceEEEccCCc
Confidence 6655 456788888888774
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=3.2e-17 Score=183.81 Aligned_cols=202 Identities=13% Similarity=0.156 Sum_probs=104.0
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeeccccccccc-ccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIA-LPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLS 975 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~ 975 (1141)
+.++.|++++|......+ .+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 455555555554333222 234455666666666654433 444555566666666666654444444455556666666
Q ss_pred EccCCCCC--CcccccCCCCCccEEeecCC-CCCcc-cCcCccccC-CcceEEecCCC--Cc-ccccccCCCCCCcCeEe
Q 001145 976 IENCENLA--YIPRGLGHLIALEHLTIMYC-PSLAF-LPENFRNLT-MLKSLCILSCP--EL-ASLPDELQHVTTLQSLE 1047 (1141)
Q Consensus 976 L~~~~~l~--~l~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~L~~n~--~~-~~~~~~l~~l~~L~~L~ 1047 (1141)
+++|.... .++..+..+++|+.|++++| .+... ++..+..++ +|++|++++|. +. ..++..+.++++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 66653332 23444555566666666666 33322 344445555 66666666652 22 23344445556666666
Q ss_pred eccCC-CCcccCcCCCCCCCcCEEeeccCCCc-cccCCCCCCCCCcceEeccCC
Q 001145 1048 IHSCP-AFKDLPEWIGNLSSLTSLTISDCHTI-ISLPANLQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1048 l~~n~-~~~~lp~~l~~l~~L~~L~l~~n~~~-~~lp~~~~~l~~L~~L~l~~c 1099 (1141)
+++|. +....+..+..+++|+.|++++|..+ ......+..+++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66665 33344445555566666666665411 111113445566666666655
No 93
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.64 E-value=4.6e-17 Score=145.63 Aligned_cols=81 Identities=17% Similarity=0.381 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh--hcccHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 001145 8 PLLQVIFDKVASGLLKSIALKFGYEEEIDKLRHTINLIRAVVEDAEER--QVREKALKIWLADLKEVAYDVDNLLDEFCL 85 (1141)
Q Consensus 8 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~ 85 (1141)
|+|+.+++|+++++.+|+....|+++++++|+++|++|++||.+|+.+ +..++.++.|+++||+++||+||++|+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999987 567899999999999999999999999998
Q ss_pred hHH
Q 001145 86 DAI 88 (1141)
Q Consensus 86 ~~~ 88 (1141)
+..
T Consensus 81 ~~~ 83 (115)
T 3qfl_A 81 QVD 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=7.3e-16 Score=169.89 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=147.5
Q ss_pred cCCCCccEEEEecCCCccccc----cccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcc--cc--ccC
Q 001145 894 ENNPCLTSLTISSCPNLRSIS----SKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTV--LP--EGI 965 (1141)
Q Consensus 894 ~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~--~~--~~~ 965 (1141)
..+++|++|++++|......+ ..+..+++|++|++++|.+....+..+..+++|++|+|++|++.+. ++ ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 678999999999998765443 2345789999999999998887778899999999999999987653 22 234
Q ss_pred CCCCCcCEEEEccCCCCCCccc----ccCCCCCccEEeecCCCCCcccCcCcccc---CCcceEEecCCCCcccccccCC
Q 001145 966 EGLTSLRSLSIENCENLAYIPR----GLGHLIALEHLTIMYCPSLAFLPENFRNL---TMLKSLCILSCPELASLPDELQ 1038 (1141)
Q Consensus 966 ~~l~~L~~L~L~~~~~l~~l~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~~~l~ 1038 (1141)
..+++|++|++++|... .++. .+..+++|+.|++++|.+....|..+..+ ++|++|++++|.+. .+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~ 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence 67999999999998764 3443 24688999999999999988777777666 69999999999986 6787764
Q ss_pred CCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1039 HVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1039 ~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
++|+.|++++|.+.+ +|. +..+++|+.|++++|++..
T Consensus 272 --~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred --CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 899999999998664 444 6788999999999998754
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.3e-15 Score=167.16 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=138.7
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++|+.|++++|.. ..++. +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.. ++. +..+++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred hhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCC
Confidence 56678999999999864 44554 8889999999999998654 44 68889999999999998655 443 78899999
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
+|++++|..... + .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... +. +..+++|+.|++++|.
T Consensus 133 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 133 VLYLDLNQITNI-S-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSC
T ss_pred EEECCCCccCcC-c-cccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCc
Confidence 999999766543 3 27889999999999998775443 78899999999999988654 33 7788999999999998
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
+.+. +. +..+++|+.|++++|++..
T Consensus 207 l~~~-~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 207 ISDV-SP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCBC-GG-GTTCTTCCEEEEEEEEEEC
T ss_pred cCcc-cc-ccCCCCCCEEEccCCeeec
Confidence 6544 33 7889999999999988754
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.2e-17 Score=183.78 Aligned_cols=208 Identities=17% Similarity=0.181 Sum_probs=146.5
Q ss_pred hcCCCCccEEEEecCCCccc-cccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCC-CCc-cccccCCCCC
Q 001145 893 LENNPCLTSLTISSCPNLRS-ISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECH-SLT-VLPEGIEGLT 969 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~-~l~-~~~~~~~~l~ 969 (1141)
+..+++|++|++++|..... ++..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.. .++..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 44678888888888874433 66667888889999998888776677778888899999998884 333 2555566788
Q ss_pred CcCEEEEccC-CCCCC-cccccCCCC-CccEEeecCCC--CC-cccCcCccccCCcceEEecCCC-CcccccccCCCCCC
Q 001145 970 SLRSLSIENC-ENLAY-IPRGLGHLI-ALEHLTIMYCP--SL-AFLPENFRNLTMLKSLCILSCP-ELASLPDELQHVTT 1042 (1141)
Q Consensus 970 ~L~~L~L~~~-~~l~~-l~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~ 1042 (1141)
+|++|++++| ..... ++..+..++ +|+.|++++|. +. ..++..+..+++|+.|++++|. +....+..+..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 8999999888 44332 566677888 89999998884 33 3355666778889999999888 55566667788888
Q ss_pred cCeEeeccCCCCc-ccCcCCCCCCCcCEEeeccCCCccccCC-CCCCC-CCcceEeccCCcchHHhh
Q 001145 1043 LQSLEIHSCPAFK-DLPEWIGNLSSLTSLTISDCHTIISLPA-NLQHL-TTLQHLSIRECPRLESRC 1106 (1141)
Q Consensus 1043 L~~L~l~~n~~~~-~lp~~l~~l~~L~~L~l~~n~~~~~lp~-~~~~l-~~L~~L~l~~c~~L~~~~ 1106 (1141)
|+.|++++|.... .....+..+++|+.|++++| ++. .+..+ .+|+.|++++| .++...
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~~ 309 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTIA 309 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCTT
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCcccc
Confidence 9999998886222 21235677888999999888 222 22233 23666667654 444333
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=8.5e-15 Score=164.22 Aligned_cols=230 Identities=20% Similarity=0.156 Sum_probs=174.4
Q ss_pred cccCCCC-C-CCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCccEEEEecCCCcccccc-ccC
Q 001145 842 RLKNMPW-F-PSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCLTSLTISSCPNLRSISS-KLG 918 (1141)
Q Consensus 842 ~L~~lp~-l-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~ 918 (1141)
+++.+|. + ++++.|++++|..... .+..|.++++|++|+|++|...+.++. .|.
T Consensus 20 ~Lt~iP~~l~~~l~~L~Ls~N~i~~i-----------------------~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 20 KVTEIPSDLPRNAIELRFVLTKLRVI-----------------------QKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TCCSCCTTCCTTCSEEEEESCCCSEE-----------------------CTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CCCccCcCcCCCCCEEEccCCcCCCc-----------------------CHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 4566665 3 4789999988764321 134578899999999999988777765 478
Q ss_pred CCCccCee-ecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccc-ccCCCC-Cc
Q 001145 919 CLVALKSL-TIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPR-GLGHLI-AL 995 (1141)
Q Consensus 919 ~~~~L~~L-~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~l~-~L 995 (1141)
+++++.++ .+..|++....|..+..+++|++|++++|.+....+..+....++..|++.+++.+..++. .+..+. .+
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 88887764 4555666666677899999999999999987665555566677888999988777776654 455554 68
Q ss_pred cEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccc-cCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeecc
Q 001145 996 EHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPD-ELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISD 1074 (1141)
Q Consensus 996 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~ 1074 (1141)
+.|++++|.+... +......++|+.|++++|+..+.+|. .+.++++|+.|++++|.+ +.+|. ..+.+|+.|.+.+
T Consensus 157 ~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~--~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 157 VILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPS--YGLENLKKLRARS 232 (350)
T ss_dssp EEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCS--SSCTTCCEEECTT
T ss_pred hhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccCh--hhhccchHhhhcc
Confidence 8999999988754 44444567899999998777777775 578899999999999874 56665 3467788888888
Q ss_pred CCCccccCCCCCCCCCcceEeccCC
Q 001145 1075 CHTIISLPANLQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1075 n~~~~~lp~~~~~l~~L~~L~l~~c 1099 (1141)
|..++.+|. +..+++|+.+++.++
T Consensus 233 ~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 233 TYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred CCCcCcCCC-chhCcChhhCcCCCC
Confidence 888888885 788999999998753
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=2.4e-17 Score=188.34 Aligned_cols=259 Identities=15% Similarity=0.086 Sum_probs=184.6
Q ss_pred cCCcccEEeeccCcccc--------CCCCCCCCCeEEEeccCcchhcccccccceeeeeecCcCCcchhhhhhhcCCCCc
Q 001145 828 EFPSLVKLFINKCERLK--------NMPWFPSLQHLEFRNCNEMIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPCL 899 (1141)
Q Consensus 828 ~~p~L~~L~i~~c~~L~--------~lp~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L 899 (1141)
.+++|+.|++++|.--. .+..+++|+.|++++|........ ...........+..+++|
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~-------------~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE-------------IPEALRLLLQALLKCPKL 96 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGG-------------SHHHHHHHHHHHTTCTTC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccc-------------hhHHHHHHHHHHhhCCcc
Confidence 45667777777764211 244567778888777642110000 000111223446789999
Q ss_pred cEEEEecCCCcc----ccccccCCCCccCeeeccccccccccc----ccccCC---------CCCCEEeEccCCCC-ccc
Q 001145 900 TSLTISSCPNLR----SISSKLGCLVALKSLTIRWCQELIALP----QEIQNL---------SLLESLEISECHSL-TVL 961 (1141)
Q Consensus 900 ~~L~L~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~l~----~~l~~l---------~~L~~L~Ls~~~~l-~~~ 961 (1141)
++|++++|.... .++..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.+. ..+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999998665 467778889999999999999754332 234444 89999999999976 334
Q ss_pred c---ccCCCCCCcCEEEEccCCCCC-----CcccccCCCCCccEEeecCCCCC----cccCcCccccCCcceEEecCCCC
Q 001145 962 P---EGIEGLTSLRSLSIENCENLA-----YIPRGLGHLIALEHLTIMYCPSL----AFLPENFRNLTMLKSLCILSCPE 1029 (1141)
Q Consensus 962 ~---~~~~~l~~L~~L~L~~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~n~~ 1029 (1141)
+ ..+..+++|++|++++|.... ..+..+..+++|+.|++++|.+. ..+|..+..+++|+.|+|++|.+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 4 355678899999999987652 23447888999999999999985 55677888999999999999998
Q ss_pred ccc----ccccC--CCCCCcCeEeeccCCCCc----ccCcCC-CCCCCcCEEeeccCCCccccC--CCC-CCCCCcceEe
Q 001145 1030 LAS----LPDEL--QHVTTLQSLEIHSCPAFK----DLPEWI-GNLSSLTSLTISDCHTIISLP--ANL-QHLTTLQHLS 1095 (1141)
Q Consensus 1030 ~~~----~~~~l--~~l~~L~~L~l~~n~~~~----~lp~~l-~~l~~L~~L~l~~n~~~~~lp--~~~-~~l~~L~~L~ 1095 (1141)
... ++..+ ..+++|+.|+|++|.+.. .+|..+ .++++|+.|++++|++.+..+ ..+ ..+++++.++
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~ 336 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 336 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCE
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcch
Confidence 754 56666 348999999999999776 477776 668999999999999886653 211 2345555566
Q ss_pred ccCC
Q 001145 1096 IREC 1099 (1141)
Q Consensus 1096 l~~c 1099 (1141)
+...
T Consensus 337 l~~~ 340 (386)
T 2ca6_A 337 LDEL 340 (386)
T ss_dssp ECCC
T ss_pred hhhc
Confidence 5544
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=6.8e-15 Score=151.59 Aligned_cols=180 Identities=14% Similarity=0.046 Sum_probs=137.0
Q ss_pred EEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCC
Q 001145 901 SLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCE 980 (1141)
Q Consensus 901 ~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~ 980 (1141)
.++.+++. ++.+|.. ..++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~-l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQG-RTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSC-CSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCC-ccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 44444433 3444443 34578888888888776555567888999999999988665444466788899999999877
Q ss_pred CCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcC
Q 001145 981 NLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEW 1060 (1141)
Q Consensus 981 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~ 1060 (1141)
.....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 66555556788899999999998887766667888899999999999887655556788899999999998653
Q ss_pred CCCCCCcCEEeeccCCCccccCCCCCCCCC
Q 001145 1061 IGNLSSLTSLTISDCHTIISLPANLQHLTT 1090 (1141)
Q Consensus 1061 l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~ 1090 (1141)
..+++|+.|+++.|.+.+.+|..+..++.
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45678899999999998899887776654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=4e-14 Score=158.75 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=43.1
Q ss_pred cEEEecccCCCCCCcccCCCCCCCccEEEEeccCCCCCCCC-CCCCCCcceeeecCCCCceEeC
Q 001145 729 KRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRCENLPA-LGQLPFLRVIYMHGMHSVKSID 791 (1141)
Q Consensus 729 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~ 791 (1141)
+.++.+++..+.+|..+ .+++++|+|++|.+....+. ++.+++|++|+|++|...+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 45666777788888754 36789999999877654433 7888888888888887655544
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.1e-14 Score=150.05 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=144.4
Q ss_pred CCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEE
Q 001145 896 NPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLS 975 (1141)
Q Consensus 896 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~ 975 (1141)
.++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46899999999976655555578999999999999998766666688999999999999997765555678999999999
Q ss_pred EccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCc
Q 001145 976 IENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 976 L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
+++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++. ..+++|+.|+++.|.+.+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 9998777655556889999999999999988777777899999999999999764 356789999999999999
Q ss_pred ccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1056 DLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1056 ~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
.+|.+++.++. ++..|...+
T Consensus 180 ~ip~~~~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 180 VVRNSAGSVAP----DSAKCSGSG 199 (208)
T ss_dssp TBBCTTSSBCT----TCSBBTTTC
T ss_pred eeeccCccccC----CccccccCC
Confidence 99998887765 555665433
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=3.7e-16 Score=176.39 Aligned_cols=210 Identities=12% Similarity=0.023 Sum_probs=143.5
Q ss_pred hhhcCCC-CccEEEEecCCCccccccccCCC-----CccCeeeccccccccccccc----ccCC-CCCCEEeEccCCCCc
Q 001145 891 RLLENNP-CLTSLTISSCPNLRSISSKLGCL-----VALKSLTIRWCQELIALPQE----IQNL-SLLESLEISECHSLT 959 (1141)
Q Consensus 891 ~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~l~~~----l~~l-~~L~~L~Ls~~~~l~ 959 (1141)
..+..++ +|++|++++|......+..+..+ ++|++|++++|.+....+.. +..+ ++|++|++++|.+..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 4466777 88888888886555444444443 88889999888876554442 4445 788999998888655
Q ss_pred ccccc----CCC-CCCcCEEEEccCCCCC----CcccccCCCC-CccEEeecCCCCCcccCcCc----ccc-CCcceEEe
Q 001145 960 VLPEG----IEG-LTSLRSLSIENCENLA----YIPRGLGHLI-ALEHLTIMYCPSLAFLPENF----RNL-TMLKSLCI 1024 (1141)
Q Consensus 960 ~~~~~----~~~-l~~L~~L~L~~~~~l~----~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~L 1024 (1141)
..+.. +.. .++|++|++++|.... .++..+..++ +|+.|++++|.+....+..+ ..+ ++|++|+|
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 43322 334 3588899998877664 3334445555 88999999888765554333 334 58889999
Q ss_pred cCCCCccc----ccccCCC-CCCcCeEeeccCCCCccc----CcCCCCCCCcCEEeeccCCCc-------cccCCCCCCC
Q 001145 1025 LSCPELAS----LPDELQH-VTTLQSLEIHSCPAFKDL----PEWIGNLSSLTSLTISDCHTI-------ISLPANLQHL 1088 (1141)
Q Consensus 1025 ~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~~~~~l----p~~l~~l~~L~~L~l~~n~~~-------~~lp~~~~~l 1088 (1141)
++|.+... ++..+.. .++|+.|++++|.+.... ...+..+++|+.|++++|.+. ..++..+..+
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 98887552 4455544 358899999888765432 244577888999999888722 2345566778
Q ss_pred CCcceEeccCCc
Q 001145 1089 TTLQHLSIRECP 1100 (1141)
Q Consensus 1089 ~~L~~L~l~~c~ 1100 (1141)
++|+.|++++|+
T Consensus 284 ~~L~~LdL~~N~ 295 (362)
T 3goz_A 284 QKIILVDKNGKE 295 (362)
T ss_dssp CEEEEECTTSCB
T ss_pred CceEEEecCCCc
Confidence 888889988885
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.7e-14 Score=146.88 Aligned_cols=150 Identities=21% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEE
Q 001145 944 LSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLC 1023 (1141)
Q Consensus 944 l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 1023 (1141)
+++|++|++++|.+. .+| .+..+++|++|++++|. ...++ .+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 444555555554433 233 34445555555555542 22222 445555555555555555544455555566666666
Q ss_pred ecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1024 ILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1024 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+++|.+....+..+..+++|+.|++++|..++.+| .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 66666555555556666666666666665444444 45666666666666665543 33 45566666666666663
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=6.9e-14 Score=164.55 Aligned_cols=176 Identities=22% Similarity=0.277 Sum_probs=134.2
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSI 976 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L 976 (1141)
.+|+.|++++|.. +.+|..+ +++|+.|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCC-CccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 3788999988864 4476654 478999999998866 566 457899999999988665 666 544 8999999
Q ss_pred ccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcc
Q 001145 977 ENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKD 1056 (1141)
Q Consensus 977 ~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1056 (1141)
++|.... +|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.+.. +|. +. ++|+.|+|++|.+. .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9876654 665 67889999999988775 454 57889999999998755 666 54 88999999988755 6
Q ss_pred cCcCCCCCCCc-------CEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1057 LPEWIGNLSSL-------TSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1057 lp~~l~~l~~L-------~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 776 544 67 89999988765 578777778899999999986
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2.1e-14 Score=155.98 Aligned_cols=173 Identities=23% Similarity=0.226 Sum_probs=138.0
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
...+++|+.|++++|.. ..++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i-~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCC
T ss_pred hhhcCcccEEEccCCCc-ccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence 34567889999998864 4444 37788999999999998766444 8889999999999998654 443 78899999
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
+|++++|.... ++ .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCC-CG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCC-Ch-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 99999976654 33 678899999999999987754 567889999999999998865544 8889999999999987
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
+. .+|. +..+++|+.|++++|++..
T Consensus 190 i~-~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 IS-DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CC-BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CC-CChh-hccCCCCCEEECcCCcccC
Confidence 54 4554 7889999999999987754
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=9.3e-14 Score=143.89 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=102.9
Q ss_pred CeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCC
Q 001145 924 KSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYC 1003 (1141)
Q Consensus 924 ~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~ 1003 (1141)
+.++++++.+ ..+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|......|..+.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCc-CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666653 34454332 57788888887766544446777777777777777666555667777777777777777
Q ss_pred CCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCc
Q 001145 1004 PSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTI 1078 (1141)
Q Consensus 1004 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~ 1078 (1141)
.+....+..+..+++|+.|+|++|.+....|..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 776555555667777777777777776666666777777777777777665555555666777777777776654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=6e-14 Score=152.44 Aligned_cols=170 Identities=19% Similarity=0.181 Sum_probs=143.2
Q ss_pred cCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCcc
Q 001145 917 LGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALE 996 (1141)
Q Consensus 917 ~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 996 (1141)
...+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.... ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 3568899999999998654 44 488899999999999987664 44 8899999999999977554 55 589999999
Q ss_pred EEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCC
Q 001145 997 HLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCH 1076 (1141)
Q Consensus 997 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~ 1076 (1141)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999988754 4678899999999999998654 568899999999999998765443 8999999999999997
Q ss_pred CccccCCCCCCCCCcceEeccCCc
Q 001145 1077 TIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1077 ~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
+.. +|. +..+++|+.|++++|+
T Consensus 190 i~~-l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 190 ISD-LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCB-CGG-GTTCTTCSEEEEEEEE
T ss_pred CCC-Chh-hccCCCCCEEECcCCc
Confidence 755 454 7889999999999985
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=9e-14 Score=143.99 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=111.4
Q ss_pred cEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccC
Q 001145 900 TSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENC 979 (1141)
Q Consensus 900 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~ 979 (1141)
+.++.+++. ++.+|..+ .++|+.|++++|.+....+..+..+++|++|+|++|.+....|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666553 55566543 257888888888876665667778888888888888877666777788888888888886
Q ss_pred CCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCC
Q 001145 980 ENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAF 1054 (1141)
Q Consensus 980 ~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1054 (1141)
......+..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 665444445677888888888888877777777888888888888888876666666777888888888887753
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=3.9e-14 Score=144.20 Aligned_cols=151 Identities=19% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEe
Q 001145 920 LVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLT 999 (1141)
Q Consensus 920 ~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~ 999 (1141)
+++|+.|++++|.+. .+| .+..+++|++|++++|.+ ..++ .+..+++|++|++++|......+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-Ccch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 334444444444433 233 344455555555555532 2122 344455555555555544443444555555555555
Q ss_pred ecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCC
Q 001145 1000 IMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHT 1077 (1141)
Q Consensus 1000 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~ 1077 (1141)
+++|.+....+..+..+++|++|++++|...+.+| .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 55555554444555555556666666555334444 45566666666666666433 33 456666777777766654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=143.03 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=101.3
Q ss_pred CeeecccccccccccccccCCCCCCEEeEccCCCCccccc-cCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecC
Q 001145 924 KSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE-GIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMY 1002 (1141)
Q Consensus 924 ~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~ 1002 (1141)
+.+++++|.+. .+|..+ .+.+++|+|++|.+....+. .+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777644 355433 34567788888776554332 456677777777777665544444677777777777777
Q ss_pred CCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1003 CPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1003 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
|.+....+..+..+++|++|+|++|.+....|..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77766666666677777777777777766656666677777777777776665556666677777777777766553
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=4.6e-14 Score=168.29 Aligned_cols=174 Identities=22% Similarity=0.220 Sum_probs=132.3
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++|+.|++++|. +..++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.. ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 3456778888888876 34444 46788888888888888665444 7788888888888887554 44 577888888
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
.|+|++|.... ++ .+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+....| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 88888876654 33 577888888888888887654 567788888888888888866555 7788889999998887
Q ss_pred CCcccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1053 AFKDLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1053 ~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
+.+ +| .+..+++|+.|+|++|++...
T Consensus 187 i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred CCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 654 44 478888899999888877654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2e-13 Score=142.53 Aligned_cols=155 Identities=17% Similarity=0.105 Sum_probs=113.9
Q ss_pred ccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeec
Q 001145 922 ALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIM 1001 (1141)
Q Consensus 922 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 1001 (1141)
+.+.++.+++. +..+|..+ .++|++|+|++|.+.+..|..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34667777666 34555443 3788888888888777667777888888888888877654444456788888888888
Q ss_pred CCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1002 YCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1002 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
+|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|++...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 88877666666777888888888888775 6677777788888888888776544445677788888888888776543
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=2.2e-13 Score=142.10 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=98.8
Q ss_pred ccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEcc
Q 001145 899 LTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIEN 978 (1141)
Q Consensus 899 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~ 978 (1141)
-+.++.+++. ++.+|..+ .++|+.|++++|.+.+..|..+..+++|++|+|++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3456665543 45555433 36677777777776666666677777777777777775443334556677777777777
Q ss_pred CCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCC
Q 001145 979 CENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAF 1054 (1141)
Q Consensus 979 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1054 (1141)
|......+..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+....+..+..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6555444445667777777777777665 55666677777777777777765544455667777777777777654
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=142.47 Aligned_cols=153 Identities=13% Similarity=0.134 Sum_probs=119.0
Q ss_pred cEEEEecCCCccccccccCCCCccCeeeccccccccccc-ccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEcc
Q 001145 900 TSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALP-QEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIEN 978 (1141)
Q Consensus 900 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~ 978 (1141)
+.++++++. ++.+|..+ .+.++.|++++|.+....+ ..+..+++|++|+|++|.+....+..+.++++|++|++++
T Consensus 14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 477887765 45566543 3456888888888766544 3477888888888888887665555788888888888888
Q ss_pred CCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCc
Q 001145 979 CENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 979 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
|......+..+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77776666678888888888888888887778888888888888888888877777888888888888888887654
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=8.8e-16 Score=173.30 Aligned_cols=211 Identities=11% Similarity=-0.006 Sum_probs=157.3
Q ss_pred hhhhcCCCCccEEEEecCCCccccc----cccCCCC-ccCeeecccccccccccccccCC-----CCCCEEeEccCCCCc
Q 001145 890 ERLLENNPCLTSLTISSCPNLRSIS----SKLGCLV-ALKSLTIRWCQELIALPQEIQNL-----SLLESLEISECHSLT 959 (1141)
Q Consensus 890 ~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~L~~~~~~~~l~~~l~~l-----~~L~~L~Ls~~~~l~ 959 (1141)
+..+...++|++|++++|......+ ..+..++ +|++|++++|.+....+..+..+ ++|++|+|++|.+..
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 3445556669999999998554444 5577888 89999999999877655555543 999999999999765
Q ss_pred cccc----cCCCC-CCcCEEEEccCCCCCCcccc----cCC-CCCccEEeecCCCCCccc----CcCccccC-CcceEEe
Q 001145 960 VLPE----GIEGL-TSLRSLSIENCENLAYIPRG----LGH-LIALEHLTIMYCPSLAFL----PENFRNLT-MLKSLCI 1024 (1141)
Q Consensus 960 ~~~~----~~~~l-~~L~~L~L~~~~~l~~l~~~----~~~-l~~L~~L~l~~~~~~~~~----~~~~~~l~-~L~~L~L 1024 (1141)
..+. .+..+ ++|++|++++|......+.. +.. .++|+.|++++|.+.... +..+..++ +|++|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 5444 23445 89999999998876554433 445 369999999999887533 33344555 9999999
Q ss_pred cCCCCcccccc----cCCCC-CCcCeEeeccCCCCcc----cCcCCCC-CCCcCEEeeccCCCccccC----CCCCCCCC
Q 001145 1025 LSCPELASLPD----ELQHV-TTLQSLEIHSCPAFKD----LPEWIGN-LSSLTSLTISDCHTIISLP----ANLQHLTT 1090 (1141)
Q Consensus 1025 ~~n~~~~~~~~----~l~~l-~~L~~L~l~~n~~~~~----lp~~l~~-l~~L~~L~l~~n~~~~~lp----~~~~~l~~ 1090 (1141)
++|.+....+. .+..+ ++|+.|++++|.+... ++..+.. .++|+.|++++|.+....+ ..+..+++
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 99998765543 34455 5999999999986542 4555555 4599999999998876433 44577899
Q ss_pred cceEeccCCc
Q 001145 1091 LQHLSIRECP 1100 (1141)
Q Consensus 1091 L~~L~l~~c~ 1100 (1141)
|+.|++++|.
T Consensus 255 L~~L~L~~n~ 264 (362)
T 3goz_A 255 LQTVYLDYDI 264 (362)
T ss_dssp CSEEEEEHHH
T ss_pred ccEEEeccCC
Confidence 9999999996
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=1.4e-13 Score=164.10 Aligned_cols=171 Identities=19% Similarity=0.182 Sum_probs=144.8
Q ss_pred cCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCcc
Q 001145 917 LGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALE 996 (1141)
Q Consensus 917 ~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 996 (1141)
+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.... ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 4578899999999999654 44 58899999999999998766443 7889999999999986654 44 789999999
Q ss_pred EEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCC
Q 001145 997 HLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCH 1076 (1141)
Q Consensus 997 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~ 1076 (1141)
.|++++|.+... ..+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999998753 4588999999999999998654 578899999999999998766555 8999999999999998
Q ss_pred CccccCCCCCCCCCcceEeccCCcc
Q 001145 1077 TIISLPANLQHLTTLQHLSIRECPR 1101 (1141)
Q Consensus 1077 ~~~~lp~~~~~l~~L~~L~l~~c~~ 1101 (1141)
+.. +| .+..+++|+.|++++|+-
T Consensus 187 i~~-l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 187 ISD-LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred CCC-Ch-HHccCCCCCEEEccCCcC
Confidence 765 44 478899999999999863
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=7.9e-14 Score=156.94 Aligned_cols=176 Identities=16% Similarity=0.074 Sum_probs=101.3
Q ss_pred cEEEEecCCCccccccccCCCCccCeeeccccccccccccccc-CCCCCCEEeEccCCCCccccccCCCCCCcCEEEEcc
Q 001145 900 TSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQ-NLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIEN 978 (1141)
Q Consensus 900 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~-~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~ 978 (1141)
+.++++++. ++.+|..+ .+.++.|+|++|.+....+..+. .+++|+.|+|++|.+....+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~-l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSC-CSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666553 44555432 23466777777776555444555 677777777777765554445566667777777777
Q ss_pred CCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccC---CCCCCcCeEeeccCCCCc
Q 001145 979 CENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDEL---QHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 979 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~ 1055 (1141)
|......+..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 65544334456666667777777666665556666666666666666666643222222 345666666666665443
Q ss_pred ccCcCCCCCCC--cCEEeeccCCCc
Q 001145 1056 DLPEWIGNLSS--LTSLTISDCHTI 1078 (1141)
Q Consensus 1056 ~lp~~l~~l~~--L~~L~l~~n~~~ 1078 (1141)
..+..+..++. |+.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 22234444444 355666665543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=2.8e-13 Score=159.38 Aligned_cols=166 Identities=20% Similarity=0.211 Sum_probs=134.3
Q ss_pred CCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSI 976 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L 976 (1141)
++|++|++++|... .+| ..+++|+.|++++|.+.+ +|. +.. +|++|+|++|.+.+ +|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 78999999998644 677 467899999999998766 666 554 99999999998766 666 5899999999
Q ss_pred ccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCc-------CeEeec
Q 001145 977 ENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTL-------QSLEIH 1049 (1141)
Q Consensus 977 ~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------~~L~l~ 1049 (1141)
++|.... +|. .+++|+.|++++|.+.. +|. +. ++|+.|+|++|.+. .+|. +.. +| +.|+++
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 9977654 664 67899999999999876 565 54 89999999999885 6676 544 77 999999
Q ss_pred cCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCC
Q 001145 1050 SCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQH 1087 (1141)
Q Consensus 1050 ~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~ 1087 (1141)
+|.+. .+|..+..+++|+.|+|++|++.+.+|..+..
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 99855 68888888999999999999998887765544
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=155.83 Aligned_cols=158 Identities=18% Similarity=0.083 Sum_probs=112.4
Q ss_pred CCccEEEEecCCCccccccccC-CCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEE
Q 001145 897 PCLTSLTISSCPNLRSISSKLG-CLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLS 975 (1141)
Q Consensus 897 ~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~ 975 (1141)
+.++.|+|++|......+..+. .+++|+.|+|++|.+....+..+..+++|++|+|++|.+....+..|.++++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4577888888765544444455 778888888888887666666778888888888888876655455677788888888
Q ss_pred EccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCc---cccCCcceEEecCCCCcccccccCCCCCC--cCeEeecc
Q 001145 976 IENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENF---RNLTMLKSLCILSCPELASLPDELQHVTT--LQSLEIHS 1050 (1141)
Q Consensus 976 L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~L~~n~~~~~~~~~l~~l~~--L~~L~l~~ 1050 (1141)
|++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|+|++|.+....+..+..++. |+.|+|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 88877666556677888888888888887765444444 46788888888888776544455666665 47788888
Q ss_pred CCCC
Q 001145 1051 CPAF 1054 (1141)
Q Consensus 1051 n~~~ 1054 (1141)
|++.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7754
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=4e-13 Score=143.32 Aligned_cols=170 Identities=14% Similarity=0.133 Sum_probs=131.7
Q ss_pred CCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEE
Q 001145 896 NPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLS 975 (1141)
Q Consensus 896 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~ 975 (1141)
+.++..++++++. ++.++ .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence 4556667777765 34444 4678889999999999855 455 68889999999999998665 444 78899999999
Q ss_pred EccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCc
Q 001145 976 IENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 976 L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
+++|.... ++. +.. ++|+.|++++|.+... ..+..+++|+.|++++|++.+ ++ .+..+++|+.|++++|.+.+
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 99976654 443 333 8999999999987753 357889999999999998855 34 67788999999999988765
Q ss_pred ccCcCCCCCCCcCEEeeccCCCccc
Q 001145 1056 DLPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1056 ~lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 6688899999999999887654
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=5.2e-15 Score=175.42 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=140.9
Q ss_pred cCCCCccEEEEecCCCccccccccCCCCccCeeeccccc-------------ccccccccccCCCCCCEEe-EccCCCCc
Q 001145 894 ENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQ-------------ELIALPQEIQNLSLLESLE-ISECHSLT 959 (1141)
Q Consensus 894 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------------~~~~l~~~l~~l~~L~~L~-Ls~~~~l~ 959 (1141)
..+++|+.|++++|. ++.+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.. .
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D 423 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence 557888889998875 56788888889999999987665 3445556677777787777 444321 1
Q ss_pred cccc------cCC--CCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcc
Q 001145 960 VLPE------GIE--GLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELA 1031 (1141)
Q Consensus 960 ~~~~------~~~--~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 1031 (1141)
.++. .+. ....|+.|++++|... .+|. ++.+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1110 000 0125888888886554 4665 888888888888888877 667788888888888888888765
Q ss_pred cccccCCCCCCcCeEeeccCCCCccc-CcCCCCCCCcCEEeeccCCCccccCCC---CCCCCCcceEec
Q 001145 1032 SLPDELQHVTTLQSLEIHSCPAFKDL-PEWIGNLSSLTSLTISDCHTIISLPAN---LQHLTTLQHLSI 1096 (1141)
Q Consensus 1032 ~~~~~l~~l~~L~~L~l~~n~~~~~l-p~~l~~l~~L~~L~l~~n~~~~~lp~~---~~~l~~L~~L~l 1096 (1141)
+| .+.++++|+.|+|++|.+.+.. |..+..+++|+.|++++|++.+..|.. +..+|+|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 66 7888888888888888876655 788888888888888888876655432 123678887764
No 122
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.34 E-value=2.2e-12 Score=148.74 Aligned_cols=273 Identities=15% Similarity=0.072 Sum_probs=154.6
Q ss_pred CccccchHHHHHHHHHH-HhCCCCCCCCceEEEEE--EecCcchHHHHHHHHHcCccccc---ccc-eEEEEEeCcchh-
Q 001145 161 SEVVGREEDKEAMIDLL-ASNGASGFGRKILVIPI--VGLGGIGKTTLAQLAYNDEKVTK---SFE-LKIWVCVNEDFN- 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l-~~~~~~~~~~~~~vv~i--~G~~GiGKTtLa~~v~~~~~~~~---~f~-~~~wv~~~~~~~- 232 (1141)
..++||+++++++.+++ ...... .......+.| +|++|+||||||+++++...... .|. .++|+.+.+...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 67999999999999988 532000 0012346666 99999999999999997432110 122 256776432110
Q ss_pred --------------------------HHHHHHhc--CcceeeeecCCCCC------ChHHHHHHHHhccCC---C--CCc
Q 001145 233 --------------------------SQLRRLLR--GRRYLLVLDDVWNE------DHEEWDKLRVSLSDG---A--EGS 273 (1141)
Q Consensus 233 --------------------------~~l~~~l~--~k~~LlvlDdvw~~------~~~~~~~l~~~l~~~---~--~gs 273 (1141)
..+.+.+. +++++||+||+|.- +...+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 12333343 67999999999652 123444444433321 2 344
Q ss_pred EEEEEcCchHHHHhh--------CC-CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcC------Cchh
Q 001145 274 RVIVTTRSAKVATIV--------GT-IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCG------GIPL 338 (1141)
Q Consensus 274 ~ilvTtr~~~v~~~~--------~~-~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Pl 338 (1141)
.+|+||+...+...+ .. ...+.+.+++.++.+++|...+...........+....|++.++ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 588788765432111 11 12389999999999999976532100011122356788899999 9997
Q ss_pred HHHHHhhhh---cc--cC---ChhhHHHhhcccccccccCccch-hHHHHhhccCCcchhhhhhccccccC--CCceech
Q 001145 339 AAKALGSLM---RF--KR---EEGDWLYVQESDLWNACEGENRI-LPALRLSYSHLPSHLKCCFTFCSVFP--KNFVIKK 407 (1141)
Q Consensus 339 ai~~~~~~l---~~--~~---~~~~w~~~~~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~~ 407 (1141)
.+..++... +. .. +.+.+..+.... . ...+.-++..||.+.+.++..++.+. .+..+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 665554321 11 11 112222111110 0 22345567889999999988888653 2334555
Q ss_pred HHHHHHHH--H---cCCcccCcccccHHHHHHHHHHHHhhcccccccc
Q 001145 408 DNLTHLWI--A---EGLIRSKDERKALEDIANDYFNDLTWMSFFQDVN 450 (1141)
Q Consensus 408 ~~li~~W~--a---eg~i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 450 (1141)
.++...|. + .|. . . . .......++++|...+++....
T Consensus 331 ~~~~~~~~~~~~~~~~~-~---~-~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 331 GLLRQRYEDASLTMYNV-K---P-R-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHHSCC-C---C-C-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHhhcCC-C---C-C-CHHHHHHHHHHHHhCCCEEeec
Confidence 55555442 2 121 0 0 1 1234567899999999998654
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=2.8e-12 Score=126.74 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=60.2
Q ss_pred CccCeeeccccccc-ccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEe
Q 001145 921 VALKSLTIRWCQEL-IALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLT 999 (1141)
Q Consensus 921 ~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~ 999 (1141)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.....+|..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------- 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE--------- 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH---------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh---------
Confidence 34444444444433 23444444455555555555543322 3344444444444444444333333333
Q ss_pred ecCCCCCcccCcCccccCCcceEEecCCCCccc-ccccCCCCCCcCeEeeccCCCCcccC---cCCCCCCCcCEEeeccC
Q 001145 1000 IMYCPSLAFLPENFRNLTMLKSLCILSCPELAS-LPDELQHVTTLQSLEIHSCPAFKDLP---EWIGNLSSLTSLTISDC 1075 (1141)
Q Consensus 1000 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~lp---~~l~~l~~L~~L~l~~n 1075 (1141)
.+++|+.|++++|.+... .+..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|
T Consensus 93 ---------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 93 ---------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ---------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ---------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 344444444444443221 11344555555555555555432222 24555666666666665
Q ss_pred CC
Q 001145 1076 HT 1077 (1141)
Q Consensus 1076 ~~ 1077 (1141)
..
T Consensus 158 ~~ 159 (168)
T 2ell_A 158 ED 159 (168)
T ss_dssp TS
T ss_pred Ch
Confidence 44
No 124
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.33 E-value=1.8e-11 Score=137.77 Aligned_cols=267 Identities=13% Similarity=0.141 Sum_probs=156.9
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch-------
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF------- 231 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------- 231 (1141)
....++||+++++++.+++... +++.|+|++|+|||||++++++.. . .+|+.+....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhcC---------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 4467999999999999988752 389999999999999999998742 1 5566543221
Q ss_pred ----------------------------------------hH---HHHHHhc-CcceeeeecCCCCCC-------hHHHH
Q 001145 232 ----------------------------------------NS---QLRRLLR-GRRYLLVLDDVWNED-------HEEWD 260 (1141)
Q Consensus 232 ----------------------------------------~~---~l~~~l~-~k~~LlvlDdvw~~~-------~~~~~ 260 (1141)
.. .+.+... .++++||+||++.-+ ...+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 00 1111122 138999999996532 12233
Q ss_pred HHHHhccCCCCCcEEEEEcCchHH-HHh---------h-CC-CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHH
Q 001145 261 KLRVSLSDGAEGSRVIVTTRSAKV-ATI---------V-GT-IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKE 328 (1141)
Q Consensus 261 ~l~~~l~~~~~gs~ilvTtr~~~v-~~~---------~-~~-~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 328 (1141)
.+...... .++.++|+|++...+ ... . +. ...+++.+|+.+|+.+++....-.... ....+.+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~--~~~~~~~~~ 230 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL--DVPENEIEE 230 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 34333322 257789999887653 221 1 11 126889999999999999875311111 112346789
Q ss_pred HHhhcCCchhHHHHHhhhhcccCChhhHHH-hhcccccccccCccchhHHH-HhhccCCcchhhhhhccccccCCCceec
Q 001145 329 IVKKCGGIPLAAKALGSLMRFKREEGDWLY-VQESDLWNACEGENRILPAL-RLSYSHLPSHLKCCFTFCSVFPKNFVIK 406 (1141)
Q Consensus 329 i~~~~~g~Plai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~cf~~~~~fp~~~~i~ 406 (1141)
|++.++|.|+++..++..+....+...+.. +.+.. ...+...+ .+.+ . ++..+..+..++. + ...
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-------KGLIMGELEELRR-R-SPRYVDILRAIAL---G-YNR 297 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CCS
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-------HHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CCC
Confidence 999999999999998875432222111110 10000 00011111 1122 2 6777888877776 2 134
Q ss_pred hHHHHHHHHHcCCcccCcccccHHHHHHHHHHHHhhccccccccCCCCCCeecccchhHHHHHH
Q 001145 407 KDNLTHLWIAEGLIRSKDERKALEDIANDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDLA 470 (1141)
Q Consensus 407 ~~~li~~W~aeg~i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~~ 470 (1141)
...+.....+.. - + .. ......+++.|...+++.... + .+...|.+++++.
T Consensus 298 ~~~l~~~~~~~~-~----~-~~-~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~ 348 (350)
T 2qen_A 298 WSLIRDYLAVKG-T----K-IP-EPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHHHTT-C----C-CC-HHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHH
T ss_pred HHHHHHHHHHHh-C----C-CC-HHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHH
Confidence 445544432211 0 0 11 244678999999999997641 2 2334577777654
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=3.2e-12 Score=136.36 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=120.6
Q ss_pred hcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcC
Q 001145 893 LENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLR 972 (1141)
Q Consensus 893 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~ 972 (1141)
+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.. ++. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-Cccc
Confidence 5677899999999985 45565 57888999999999998765444 8899999999999998655 444 333 8899
Q ss_pred EEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCC
Q 001145 973 SLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCP 1052 (1141)
Q Consensus 973 ~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1052 (1141)
.|++++|.... ++ .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+... ..+..+++|+.|++++|+
T Consensus 110 ~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 99999976654 44 688899999999999987754 3 678899999999999988655 668888999999999988
Q ss_pred CCcc
Q 001145 1053 AFKD 1056 (1141)
Q Consensus 1053 ~~~~ 1056 (1141)
+...
T Consensus 184 ~~~~ 187 (263)
T 1xeu_A 184 CVNE 187 (263)
T ss_dssp EECC
T ss_pred ccCC
Confidence 6543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=3.4e-12 Score=126.14 Aligned_cols=130 Identities=19% Similarity=0.256 Sum_probs=94.5
Q ss_pred CCcCEEEEccCCCC-CCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEe
Q 001145 969 TSLRSLSIENCENL-AYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLE 1047 (1141)
Q Consensus 969 ~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 1047 (1141)
++|+.|++++|... ..+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+...+|..+.++++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555554433 24444445556666666666665433 5566777788888888887666777777799999999
Q ss_pred eccCCCCcccC--cCCCCCCCcCEEeeccCCCccccC---CCCCCCCCcceEeccCCcc
Q 001145 1048 IHSCPAFKDLP--EWIGNLSSLTSLTISDCHTIISLP---ANLQHLTTLQHLSIRECPR 1101 (1141)
Q Consensus 1048 l~~n~~~~~lp--~~l~~l~~L~~L~l~~n~~~~~lp---~~~~~l~~L~~L~l~~c~~ 1101 (1141)
+++|.+.+ +| ..+..+++|+.|++++|++....+ ..+..+++|+.|++++|+.
T Consensus 102 Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99998654 33 678999999999999998775544 3678899999999999953
No 127
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=2.3e-11 Score=137.26 Aligned_cols=266 Identities=15% Similarity=0.159 Sum_probs=155.0
Q ss_pred ccCccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-------h
Q 001145 159 IESEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-------F 231 (1141)
Q Consensus 159 ~~~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-------~ 231 (1141)
....++||+++++.|.+ +.. +++.|+|++|+|||||++++.+... . ..+|+.+... .
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC----------CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCH
Confidence 34679999999999988 532 3899999999999999999987422 1 1456654421 0
Q ss_pred h-------------------------------------------------HHHHHHhcC---cceeeeecCCCCCCh---
Q 001145 232 N-------------------------------------------------SQLRRLLRG---RRYLLVLDDVWNEDH--- 256 (1141)
Q Consensus 232 ~-------------------------------------------------~~l~~~l~~---k~~LlvlDdvw~~~~--- 256 (1141)
. ..+.+.+.. ++++||+||++.-+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 0 012222221 489999999954221
Q ss_pred HHHHHHHHhccCCCCCcEEEEEcCchHHHH-h---------h-CC-CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcch
Q 001145 257 EEWDKLRVSLSDGAEGSRVIVTTRSAKVAT-I---------V-GT-IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLP 324 (1141)
Q Consensus 257 ~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~-~---------~-~~-~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~ 324 (1141)
..|..+...+.+...+.++|+|++...... . . +. ...+.+.+|+.+|+.+++........... .+
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~ 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF---KD 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC---CC
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC---Cc
Confidence 123222233322224678999999865322 1 1 11 23688999999999999987531111111 11
Q ss_pred hhHHHHhhcCCchhHHHHHhhhhcccCChhhHHH-hhcccccccccCccchhHHHH-hhcc--CCcchhhhhhccccccC
Q 001145 325 VGKEIVKKCGGIPLAAKALGSLMRFKREEGDWLY-VQESDLWNACEGENRILPALR-LSYS--HLPSHLKCCFTFCSVFP 400 (1141)
Q Consensus 325 ~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~~~fp 400 (1141)
..+|++.++|.|+++..++..+....+...|.. +.+. . ...+...+. +.++ .+|+..+..+..++.
T Consensus 232 -~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-- 301 (357)
T 2fna_A 232 -YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY-A------KKLILKEFENFLHGREIARKRYLNIMRTLSK-- 301 (357)
T ss_dssp -HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH-H------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--
T ss_pred -HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH-H------HHHHHHHHHHHhhccccccHHHHHHHHHHHc--
Confidence 288999999999999999877643322222311 1000 0 000111111 2221 677888888888887
Q ss_pred CCceechHHHHHHHH-HcCCcccCcccccHHHHHHHHHHHHhhccccccccCCCCCCeecccchhHHHHH
Q 001145 401 KNFVIKKDNLTHLWI-AEGLIRSKDERKALEDIANDYFNDLTWMSFFQDVNKDSDGNVLDCKMHDLIHDL 469 (1141)
Q Consensus 401 ~~~~i~~~~li~~W~-aeg~i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~ 469 (1141)
+. ....+....- ..|. . . .......+++.|+..+++.... + .+...|.++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~--~----~-~~~~~~~~L~~L~~~gli~~~~----~--~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGI--E----I-SDSEIYNYLTQLTKHSWIIKEG----E--KYCPSEPLISLA 355 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCS--C----C-CHHHHHHHHHHHHHTTSEEESS----S--CEEESSHHHHHH
T ss_pred -CC--CHHHHHHHHHHhcCC--C----C-CHHHHHHHHHHHHhCCCEEecC----C--EEEecCHHHHHh
Confidence 21 3344432211 1121 0 0 1234668999999999997542 2 223467888765
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=1.9e-11 Score=123.49 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=101.0
Q ss_pred CEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccc-ccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecC
Q 001145 948 ESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPR-GLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILS 1026 (1141)
Q Consensus 948 ~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 1026 (1141)
+.++++++.+ +.+|..+. .+|+.|++++|......+. .+..+++|+.|++++|.+....|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888774 55666443 3888888888766544443 377888888888888888877788888888888888888
Q ss_pred CCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCcccc
Q 001145 1027 CPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISL 1081 (1141)
Q Consensus 1027 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~l 1081 (1141)
|.+....+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 8887766777788888888888888877777778888888888888888776543
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=1.6e-11 Score=123.93 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=107.8
Q ss_pred CeeecccccccccccccccCCCCCCEEeEccCCCCccccc-cCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecC
Q 001145 924 KSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE-GIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMY 1002 (1141)
Q Consensus 924 ~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~ 1002 (1141)
+.++++++.+ +.+|..+. ++|++|++++|.+....+. .+..+++|++|++++|......|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888875 45665443 3899999999987654443 377889999999999888777788888999999999999
Q ss_pred CCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCccc
Q 001145 1003 CPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDL 1057 (1141)
Q Consensus 1003 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~l 1057 (1141)
|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9988888888888999999999999998888888889999999999999876543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=7.1e-13 Score=162.50 Aligned_cols=143 Identities=19% Similarity=0.188 Sum_probs=90.3
Q ss_pred ccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCcccc
Q 001145 937 LPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNL 1016 (1141)
Q Consensus 937 l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 1016 (1141)
.+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4455667777777777777654 45555556777777777776554 66666777777777777777766 556677777
Q ss_pred CCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCC-CcCEEeeccCCCccccCC
Q 001145 1017 TMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLS-SLTSLTISDCHTIISLPA 1083 (1141)
Q Consensus 1017 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~-~L~~L~l~~n~~~~~lp~ 1083 (1141)
++|+.|+|++|.+ +.+|..+..+++|+.|+|++|.+.+.+|..+..+. .+..|++++|.+.+.+|.
T Consensus 293 ~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 293 FQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 7777777777766 36666677777777777777776666665543321 122355666666555553
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3e-12 Score=123.64 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=41.3
Q ss_pred CccCeeeccccccc-ccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEe
Q 001145 921 VALKSLTIRWCQEL-IALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLT 999 (1141)
Q Consensus 921 ~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~ 999 (1141)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555544 34444455555555555555554332 3344455555555555444433444444444444444
Q ss_pred ecCCCCC
Q 001145 1000 IMYCPSL 1006 (1141)
Q Consensus 1000 l~~~~~~ 1006 (1141)
+++|.+.
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 4444433
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=1.9e-12 Score=125.03 Aligned_cols=127 Identities=19% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCCCCEEeEccCCCC-ccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceE
Q 001145 944 LSLLESLEISECHSL-TVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSL 1022 (1141)
Q Consensus 944 l~~L~~L~Ls~~~~l-~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1022 (1141)
.++|+.|++++|.+. +.+|..+..+++|+.|++++|..... ..++.+++|+.|++++|.+...+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356667777776654 35555556666666666666544333 345556666666666665554444444445555555
Q ss_pred EecCCCCccc-ccccCCCCCCcCeEeeccCCCCcccC---cCCCCCCCcCEEee
Q 001145 1023 CILSCPELAS-LPDELQHVTTLQSLEIHSCPAFKDLP---EWIGNLSSLTSLTI 1072 (1141)
Q Consensus 1023 ~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~lp---~~l~~l~~L~~L~l 1072 (1141)
++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555554331 12444445555555555544332211 13444444444444
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=3.6e-14 Score=168.23 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=142.9
Q ss_pred CCCCccCeeecccccccccccccccCCCCCCEEeEccCC-------------CCccccccCCCCCCcCEEE-EccCCCCC
Q 001145 918 GCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECH-------------SLTVLPEGIEGLTSLRSLS-IENCENLA 983 (1141)
Q Consensus 918 ~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~-------------~l~~~~~~~~~l~~L~~L~-L~~~~~l~ 983 (1141)
..+++|+.|+|++|.+ +.+|..++.|++|+.|++++|. ..+..|..+..+++|+.|+ ++.| ...
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 5678999999999995 5789999999999999997764 4455566667788888887 4442 111
Q ss_pred Cccc------ccC--CCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCc
Q 001145 984 YIPR------GLG--HLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 984 ~l~~------~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
.++. .+. ....|+.|++++|.+.. +|. +..+++|+.|+|++|.+. .+|..+.++++|+.|+|++|.+.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111 011 11359999999998875 565 999999999999999986 889999999999999999998765
Q ss_pred ccCcCCCCCCCcCEEeeccCCCcccc-CCCCCCCCCcceEeccCCc
Q 001145 1056 DLPEWIGNLSSLTSLTISDCHTIISL-PANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1056 ~lp~~l~~l~~L~~L~l~~n~~~~~l-p~~~~~l~~L~~L~l~~c~ 1100 (1141)
+| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 77 7999999999999999888776 9999999999999999995
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=7.1e-13 Score=162.48 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=101.7
Q ss_pred hhhhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCC
Q 001145 888 IFERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEG 967 (1141)
Q Consensus 888 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~ 967 (1141)
..+..+..++.|+.|+|++|... .+|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34556777888888888887644 66666667888888888888766 67777888888888888888765 56777778
Q ss_pred CCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCC-cceEEecCCCCcccccccCCCCCCcCeE
Q 001145 968 LTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTM-LKSLCILSCPELASLPDELQHVTTLQSL 1046 (1141)
Q Consensus 968 l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~l~~l~~L~~L 1046 (1141)
+++|++|+|++|.. ..+|..++.+++|+.|+|++|.+...+|..+..+.. +..|++++|.+...+|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 88888888888654 467777888888888888888887776666544322 22366777777666554 45556
Q ss_pred eeccC
Q 001145 1047 EIHSC 1051 (1141)
Q Consensus 1047 ~l~~n 1051 (1141)
++++|
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 66665
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=4.6e-11 Score=132.54 Aligned_cols=102 Identities=9% Similarity=-0.076 Sum_probs=64.9
Q ss_pred CCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcC-eEeeccCCCCcccCcCCCCCCCcCEE
Q 001145 992 LIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQ-SLEIHSCPAFKDLPEWIGNLSSLTSL 1070 (1141)
Q Consensus 992 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~lp~~l~~l~~L~~L 1070 (1141)
+++|+.+++++|.+....+..|.++++|++|+|.+| +...-+..|.++++|+ .+++.+ .+...-+..|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567777777776666555566777777777777766 3233334566777777 777766 3333334566777777777
Q ss_pred eeccCCCccccCCCCCCCCCcceEe
Q 001145 1071 TISDCHTIISLPANLQHLTTLQHLS 1095 (1141)
Q Consensus 1071 ~l~~n~~~~~lp~~~~~l~~L~~L~ 1095 (1141)
+++.|.+...-+..|..+++|+.|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7766665555555667777777664
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=8.9e-11 Score=118.39 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=83.3
Q ss_pred CEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCC
Q 001145 948 ESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSC 1027 (1141)
Q Consensus 948 ~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 1027 (1141)
+.++++++.+ ..+|..+ .++|+.|++++|... .+|..+..+++|+.|++++|.+....+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l-~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCC-SSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCC-CcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5677777663 3456543 357777777775543 55666777777777777777776666666777777777777777
Q ss_pred CCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCc
Q 001145 1028 PELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTI 1078 (1141)
Q Consensus 1028 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~ 1078 (1141)
.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 766555556666777777777776654433345666667777777766654
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=8e-11 Score=118.71 Aligned_cols=127 Identities=15% Similarity=0.200 Sum_probs=87.8
Q ss_pred CeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCC
Q 001145 924 KSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYC 1003 (1141)
Q Consensus 924 ~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~ 1003 (1141)
+.++++++.+. .+|..+ .++|++|++++|.+. .+|..+..+++|+.|++++|.+....+..+.++++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666643 445433 357777777777654 46666777777777777777666555556777777777777777
Q ss_pred CCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCC
Q 001145 1004 PSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAF 1054 (1141)
Q Consensus 1004 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1054 (1141)
.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666667777777777777777776544455677777777777777653
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=3.2e-11 Score=119.98 Aligned_cols=129 Identities=26% Similarity=0.261 Sum_probs=105.0
Q ss_pred hhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhh-hcCCCC
Q 001145 511 LYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESI-CDLVYL 589 (1141)
Q Consensus 511 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L 589 (1141)
+..+.+|+.|++ +.+.+..+ +......++|++|+|++|.++.+ ..++.+++|++|++++|.|+.+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l--~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDL--RGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEEC--TTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEe--eCCCCchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 456788999998 66666654 44333344999999999999988 68899999999999999999998665 899999
Q ss_pred cEEecCCCCCCcccCc--cccCCCCCcEEEecCcccccccCcc----cCCCCCCCccCceEe
Q 001145 590 QVLNLSDCHDLIELPK--RLASIFQLRHLMIYGCCRLSQFPDH----IGRLIQLQTLPVFIV 645 (1141)
Q Consensus 590 ~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~ 645 (1141)
++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999986 577887 7889999999999998 55677764 888899999877544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.5e-10 Score=115.40 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=54.0
Q ss_pred CcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeec
Q 001145 970 SLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIH 1049 (1141)
Q Consensus 970 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1049 (1141)
+|+.|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444433332222233444555555555554443333344455555555555555544333444555666666666
Q ss_pred cCCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1050 SCPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1050 ~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
+|.+.+..+..+..+++|+.|++++|++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 655443323334556666666666665543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=2.1e-10 Score=114.24 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=104.9
Q ss_pred cCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeecc
Q 001145 971 LRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHS 1050 (1141)
Q Consensus 971 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 1050 (1141)
.+.++++++. +..+|..+ .++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4667777744 44555333 47999999999998877777789999999999999998766666688999999999999
Q ss_pred CCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCCc
Q 001145 1051 CPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1051 n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99776666678899999999999998876555567889999999999996
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=3.3e-10 Score=120.26 Aligned_cols=178 Identities=19% Similarity=0.203 Sum_probs=121.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc-------------------ccce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK-------------------SFEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 221 (1141)
..++||++.++.+..++.... ..+.+.|+|++|+||||+|+.+++...... .+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred HHHhCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcc
Confidence 468999999999999997651 224789999999999999999986422111 1111
Q ss_pred EEEEEeCc-chhHHHHHHh--------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHH-hhCC
Q 001145 222 KIWVCVNE-DFNSQLRRLL--------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VAT-IVGT 290 (1141)
Q Consensus 222 ~~wv~~~~-~~~~~l~~~l--------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~-~~~~ 290 (1141)
...+.... .....+.+.+ .+++.+||+||++.-+...++.+...+.....+..+|+||+... +.. ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r 176 (250)
T 1njg_A 97 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 176 (250)
T ss_dssp EEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred eEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH
Confidence 23333222 1122233332 34678999999976666778888887776666788888887643 211 1223
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhh
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSL 346 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 346 (1141)
...+++.+++.++..+++.+.+..... .-..+..+.|++.|+|.|..+..+...
T Consensus 177 ~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 177 CLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 347899999999999999987643221 112346788999999999988877653
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=4.7e-11 Score=118.78 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=35.4
Q ss_pred cCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcce
Q 001145 942 QNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKS 1021 (1141)
Q Consensus 942 ~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1021 (1141)
..+++|+.|++++|.+.. ++......++|++|++++|.... + ..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344555555555554332 23211112245555555543322 1 23444444555555554443222222234444444
Q ss_pred EEecCCCC
Q 001145 1022 LCILSCPE 1029 (1141)
Q Consensus 1022 L~L~~n~~ 1029 (1141)
|++++|.+
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 44444433
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=3.7e-10 Score=125.22 Aligned_cols=103 Identities=14% Similarity=-0.018 Sum_probs=84.3
Q ss_pred CCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcc-eEEecCCCCcccccccCCCCCCcCeE
Q 001145 968 LTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLK-SLCILSCPELASLPDELQHVTTLQSL 1046 (1141)
Q Consensus 968 l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L 1046 (1141)
+++|+.|++++|.....-+..|.++++|+.|++.+| +....+..|.++++|+ .+.+.+ .+...-+..|.+|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999987655444457899999999999997 6656677899999999 999988 5544445789999999999
Q ss_pred eeccCCCCcccCcCCCCCCCcCEEee
Q 001145 1047 EIHSCPAFKDLPEWIGNLSSLTSLTI 1072 (1141)
Q Consensus 1047 ~l~~n~~~~~lp~~l~~l~~L~~L~l 1072 (1141)
++++|.+...-+..|.++++|+.|+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99988866555678999999999864
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.06 E-value=4.7e-09 Score=118.56 Aligned_cols=216 Identities=10% Similarity=0.057 Sum_probs=148.6
Q ss_pred hhhhcCCCCccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccc-cCCCC
Q 001145 890 ERLLENNPCLTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPE-GIEGL 968 (1141)
Q Consensus 890 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~~l 968 (1141)
...|.++++|+.+++.++. ++.++...-.+.+|+.+.+..+ +...-...|.++++|+.++|..+ +..++. .|.+
T Consensus 173 ~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~- 247 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE- 247 (401)
T ss_dssp SSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-
T ss_pred HHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-
Confidence 4568888899999998765 4445444333688898888744 34444456888999999999874 344544 5555
Q ss_pred CCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCC-----cccCcCccccCCcceEEecCCCCcccccccCCCCCCc
Q 001145 969 TSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSL-----AFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTL 1043 (1141)
Q Consensus 969 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 1043 (1141)
.+|+.+.+.. +....-...|.++++|+.+.+.++... ...+..|.++++|+.+.|.++ +...-...|.+|++|
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSC
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCc
Confidence 7899999854 333333457888999999999876654 355667888999999998843 433334567888999
Q ss_pred CeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCC-CcceEeccCCcchHHhhccCCCCCcccee
Q 001145 1044 QSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLT-TLQHLSIRECPRLESRCKKYVGEDWLKVA 1118 (1141)
Q Consensus 1044 ~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~-~L~~L~l~~c~~L~~~~~~~~~~~~~~i~ 1118 (1141)
+.+.|..+ ....-+..|.++ +|+.|++.+|......+..|..++ +++.|.+..+. .+.++.. ..|-..+
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~~f~ 395 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWRDFT 395 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGGGGG
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchhhhh
Confidence 99999654 333334678888 899999998876665566677774 68888887653 3444433 3475544
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1.4e-12 Score=132.90 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=59.9
Q ss_pred CCccCeeecccccccccccc------cccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcccccCCCC
Q 001145 920 LVALKSLTIRWCQELIALPQ------EIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLI 993 (1141)
Q Consensus 920 ~~~L~~L~L~~~~~~~~l~~------~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~ 993 (1141)
...++.++++.+.+.+..|. .+..+++|++|++++|.+.. +| .+..+++|++|++++|... .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34445555555544443332 45556666666666655333 44 4445555555555554333 3443344445
Q ss_pred CccEEeecCCCCCcccCcCccccCCcceEEecCCCCccccc-ccCCCCCCcCeEeeccCCC
Q 001145 994 ALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLP-DELQHVTTLQSLEIHSCPA 1053 (1141)
Q Consensus 994 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~ 1053 (1141)
+|+.|++++|.+.. +| .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|++
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 55555555554432 22 24444445555554444422111 2334444444444444443
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.02 E-value=1.9e-09 Score=112.29 Aligned_cols=174 Identities=15% Similarity=0.109 Sum_probs=116.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc-eEEEEEeCcchh-----HH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-LKIWVCVNEDFN-----SQ 234 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~-----~~ 234 (1141)
..++|+++.++.+.+++... ....+.|+|++|+|||++|+.+++.... ..+. ..+.+..+.... ..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-------NIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-------CCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHH
Confidence 46899999999999998764 2224899999999999999999873211 1121 233344333221 12
Q ss_pred HHHHh------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHH-hhCCCCceeCCCCCHHHHHH
Q 001145 235 LRRLL------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VAT-IVGTIPPYYLKGLSHDDCWT 306 (1141)
Q Consensus 235 l~~~l------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~-~~~~~~~~~l~~l~~~~~~~ 306 (1141)
+.... .+++.++|+||++.-....++.+...+.....+.++|+||+... +.. .......+.+.+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~ 168 (226)
T 2chg_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (226)
T ss_dssp HHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHH
Confidence 33333 25788999999976666667777777766566788888887643 111 12223378999999999999
Q ss_pred HHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 307 LFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 307 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
++.+.+..... .-..+..+.+++.++|.|..+..+.
T Consensus 169 ~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 169 RLLEICEKEGV--KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99887632111 1123466788999999998655443
No 147
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=2.9e-09 Score=121.15 Aligned_cols=266 Identities=14% Similarity=-0.000 Sum_probs=149.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc----cc--cceEEEEEeCcch---
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT----KS--FELKIWVCVNEDF--- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~--- 231 (1141)
..++||+++++++.+++...-. +...+.+.|+|++|+||||+|+.+++..... .. ....+|+......
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 6799999999999988865210 1134589999999999999999999742111 01 2235666643311
Q ss_pred -----------------------h---HHHHHHhcCcceeeeecCCCCCChHH-HHHHHHhccCCCCCcEEEEEcCchHH
Q 001145 232 -----------------------N---SQLRRLLRGRRYLLVLDDVWNEDHEE-WDKLRVSLSDGAEGSRVIVTTRSAKV 284 (1141)
Q Consensus 232 -----------------------~---~~l~~~l~~k~~LlvlDdvw~~~~~~-~~~l~~~l~~~~~gs~ilvTtr~~~v 284 (1141)
. ..+.+.+..++.+||+||++.-.... .+.+...+.....+..+|+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 0 12334455555699999995421111 12202223222267789999886421
Q ss_pred ----HHhh--CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcC---Cchh-HHHHHhhhh--cc---
Q 001145 285 ----ATIV--GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCG---GIPL-AAKALGSLM--RF--- 349 (1141)
Q Consensus 285 ----~~~~--~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~~--- 349 (1141)
...+ .....+.+.+++.++..++|...+...-....-..+..+.+++.++ |.|. |+..+-.+. +.
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 1111 1123899999999999999998742100011122345677888887 8887 444333222 11
Q ss_pred cCChhhHHHhhcccccccccCccchhHHHHhhccCCcchhhhhhccccccCCCceechHHHHH--HHHH--cCCcccCcc
Q 001145 350 KREEGDWLYVQESDLWNACEGENRILPALRLSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTH--LWIA--EGLIRSKDE 425 (1141)
Q Consensus 350 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~--~W~a--eg~i~~~~~ 425 (1141)
.-+.+.+..+.... ....+.-+++.|+.+.+..+..++. -++ ..++.+ .-++ .| +..
T Consensus 257 ~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~-~~~----~~~~~~~~~~~~~~~g-~~~--- 317 (384)
T 2qby_B 257 IIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIE-SED----VMSAHKMYTDLCNKFK-QKP--- 317 (384)
T ss_dssp CCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHT-CCB----HHHHHHHHHHHHHHTT-CCC---
T ss_pred ccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHH-hcc----cChHHHHHHHHHHHcC-CCC---
Confidence 12344444443321 1134556678888877766655554 111 011111 1122 22 111
Q ss_pred cccHHHHHHHHHHHHhhcccccccc
Q 001145 426 RKALEDIANDYFNDLTWMSFFQDVN 450 (1141)
Q Consensus 426 ~~~~e~~~~~~~~~L~~~~ll~~~~ 450 (1141)
. .......++..|...+++....
T Consensus 318 -~-~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 318 -L-SYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp -C-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred -C-CHHHHHHHHHHHHhCCCEEEEe
Confidence 1 1244667899999999998654
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=5.7e-09 Score=119.05 Aligned_cols=300 Identities=15% Similarity=0.048 Sum_probs=166.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh--H-----
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN--S----- 233 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~----- 233 (1141)
+.++||+++++++..++...... .....+.+.|+|++|+||||+|+.+++.......+ ..+|+..+.... .
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe-eEEEEeCccCCCHHHHHHHH
Confidence 67999999999999988752100 01123489999999999999999998742211112 355666443221 0
Q ss_pred --------------------HHHHHh--cCcceeeeecCCCCCChHHHHHHHHhccCCC----CCcEEEEEcCchHHHHh
Q 001145 234 --------------------QLRRLL--RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA----EGSRVIVTTRSAKVATI 287 (1141)
Q Consensus 234 --------------------~l~~~l--~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~----~gs~ilvTtr~~~v~~~ 287 (1141)
.+.+.+ .+++.+||+|+++.-+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 122222 2568899999997666666666666554321 36678888776543322
Q ss_pred hC-------CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhc---------CCchhHHHHHhhhhcc--
Q 001145 288 VG-------TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKC---------GGIPLAAKALGSLMRF-- 349 (1141)
Q Consensus 288 ~~-------~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~l~~-- 349 (1141)
+. ....+.+.+++.++..+++...+........-..+....+++.+ +|.|..+..+......
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 11 12369999999999999998875321001122234667888888 7887654443322110
Q ss_pred ---cCChhhHHHhhcccccccccCccchhHHHHhhccCCcchhhhhhccccccC---CCceechHHHHHHHHH----cCC
Q 001145 350 ---KREEGDWLYVQESDLWNACEGENRILPALRLSYSHLPSHLKCCFTFCSVFP---KNFVIKKDNLTHLWIA----EGL 419 (1141)
Q Consensus 350 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~li~~W~a----eg~ 419 (1141)
....-.+..+.... .... .. .+.-.+..||.+.+.++..++.+. .+..+....+...+-. .|.
T Consensus 255 ~~~~~~~i~~~~v~~~~-~~~~--~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSS-KEVL--FG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE 327 (389)
T ss_dssp HHTTCSSCCHHHHHHHH-HHHS--CC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCcCHHHHHHHH-HHHh--hh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC
Confidence 11111111111100 0000 01 112234567777777776666543 2224566666665533 231
Q ss_pred cccCcccccHHHHHHHHHHHHhhccccccccC----CCCCCee----cccchhHHHHHHHHhhc
Q 001145 420 IRSKDERKALEDIANDYFNDLTWMSFFQDVNK----DSDGNVL----DCKMHDLIHDLAQSVVG 475 (1141)
Q Consensus 420 i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~----~~~~~~~----~~~mhdl~~d~~~~~~~ 475 (1141)
.. .+ ......++++|..++++..... +..|+.. .+..||++..+...+..
T Consensus 328 ~~-----~~-~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 328 RP-----RV-HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp CC-----CC-HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred CC-----CC-HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 11 11 2345679999999999987654 1223322 22356777766555443
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=1.5e-08 Score=114.55 Aligned_cols=196 Identities=12% Similarity=0.117 Sum_probs=147.6
Q ss_pred hhhhcCCCCccEEEEecCCCccccc-cccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCcccc-ccCCC
Q 001145 890 ERLLENNPCLTSLTISSCPNLRSIS-SKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLP-EGIEG 967 (1141)
Q Consensus 890 ~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~~ 967 (1141)
...|.+ .+|+.+.+.+ .++.++ ..|.+|++|+.+++.+|.+.......|. +++|+.+.|..+ +..++ ..|.+
T Consensus 151 ~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~ 224 (401)
T 4fdw_A 151 DMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLK 224 (401)
T ss_dssp TTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTT
T ss_pred HHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhC
Confidence 344666 4699999986 344444 4588999999999998886654445565 689999999854 44444 48889
Q ss_pred CCCcCEEEEccCCCCCCccc-ccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCc-----ccccccCCCCC
Q 001145 968 LTSLRSLSIENCENLAYIPR-GLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPEL-----ASLPDELQHVT 1041 (1141)
Q Consensus 968 l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~l~~l~ 1041 (1141)
+++|+.+.+..+ +..++. .|.+ .+|+.+.+.+ .+.......|.++++|+.+.+.++... ..-+..|.+|+
T Consensus 225 ~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 225 TSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 999999999873 344443 5555 7899999954 455566778999999999999988764 23346788999
Q ss_pred CcCeEeeccCCCCccc-CcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCC
Q 001145 1042 TLQSLEIHSCPAFKDL-PEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1042 ~L~~L~l~~n~~~~~l-p~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c 1099 (1141)
+|+.++|.+ . +..+ ...|.++++|+.|.|..+ ....-+..|..+ +|+.|++.+|
T Consensus 301 ~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 301 KLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred cCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 999999985 3 4444 467889999999999764 444445678889 9999999987
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=1.5e-11 Score=125.03 Aligned_cols=133 Identities=26% Similarity=0.343 Sum_probs=109.3
Q ss_pred CCcCchhhhcCCCCcEEeccccCCCCCCCCccccCCCCcccEEEccCCCCccccccccccccCceEecCCCcccccchhh
Q 001145 504 LQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESI 583 (1141)
Q Consensus 504 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 583 (1141)
+..+|..+..+++|+.|++ +.+.+..++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+
T Consensus 37 l~~l~~~~~~l~~L~~L~l--s~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLAL--STNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEEC--SEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HhhhhHHHhcCCCCCEEEC--CCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 4456668899999999998 666666644 688899999999999999999998888999999999999999988 69
Q ss_pred hcCCCCcEEecCCCCCCcccCc--cccCCCCCcEEEecCcccccccCcc----------cCCCCCCCccCc
Q 001145 584 CDLVYLQVLNLSDCHDLIELPK--RLASIFQLRHLMIYGCCRLSQFPDH----------IGRLIQLQTLPV 642 (1141)
Q Consensus 584 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L~~ 642 (1141)
.++++|++|++++|. +..+|. .+..+++|++|++++|......|.. +..+++|+.|+.
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 999999999999986 555553 6899999999999998543443432 677888888853
No 151
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.96 E-value=4.3e-09 Score=120.03 Aligned_cols=270 Identities=14% Similarity=0.065 Sum_probs=149.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc---c-cceEEEEEeCcch-----
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK---S-FELKIWVCVNEDF----- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~----- 231 (1141)
..++||+++++++..++...-. +...+.+.|+|++|+||||+|+.+++...... . -...+|+......
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 6799999999999998854310 11345789999999999999999987421110 0 1234566644211
Q ss_pred -------------------h---HHHHHHh--cCcceeeeecCCCCCChH--HHHHHHHhc---cCC--CCCcEEEEEcC
Q 001145 232 -------------------N---SQLRRLL--RGRRYLLVLDDVWNEDHE--EWDKLRVSL---SDG--AEGSRVIVTTR 280 (1141)
Q Consensus 232 -------------------~---~~l~~~l--~~k~~LlvlDdvw~~~~~--~~~~l~~~l---~~~--~~gs~ilvTtr 280 (1141)
. ..+.+.+ .+++.+||+|+++.-... ..+.+...+ ... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 1 1233333 356889999999542211 223333222 211 34567888887
Q ss_pred chH--------HHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcC---CchhH-HHHHhhhhc
Q 001145 281 SAK--------VATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCG---GIPLA-AKALGSLMR 348 (1141)
Q Consensus 281 ~~~--------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pla-i~~~~~~l~ 348 (1141)
... +...+. ...+.+.+++.++..+++.+.+........-..+..+.+++.++ |.|-. +.++..+..
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 642 222111 13688999999999999988742100011122345677888887 99943 333322211
Q ss_pred -----c--cCChhhHHHhhcccccccccCccchhHHHHhhccCCcchhhhhhcccc-ccCCCceechHHHHHHHHH----
Q 001145 349 -----F--KREEGDWLYVQESDLWNACEGENRILPALRLSYSHLPSHLKCCFTFCS-VFPKNFVIKKDNLTHLWIA---- 416 (1141)
Q Consensus 349 -----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~li~~W~a---- 416 (1141)
. .-+.+.+..+.... ....+.-++..++.+.+..+.... ++..+..+....+.+....
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 1 11233343333221 112345567888888776665554 3322224555544443321
Q ss_pred cCCcccCcccccHHHHHHHHHHHHhhcccccccc
Q 001145 417 EGLIRSKDERKALEDIANDYFNDLTWMSFFQDVN 450 (1141)
Q Consensus 417 eg~i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 450 (1141)
.| +. .........+++.|...+++....
T Consensus 325 ~~-~~-----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 325 LG-LE-----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp TT-CC-----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cC-CC-----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 23 11 112355678999999999998753
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=7.2e-08 Score=109.64 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=116.5
Q ss_pred hhhhcCCCCccEEEEecCCCccccc-cccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCC
Q 001145 890 ERLLENNPCLTSLTISSCPNLRSIS-SKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGL 968 (1141)
Q Consensus 890 ~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l 968 (1141)
...|.++++|+.+.+..+ ++.++ ..+.++..|+.+.+..+.. .+........+|+.+.+.... ...-...+.++
T Consensus 178 ~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~ 252 (394)
T 4fs7_A 178 NGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGC 252 (394)
T ss_dssp TTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTC-CEECSSTTTTC
T ss_pred cccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCCc-eeccccccccc
Confidence 344667777777777654 33333 3466777777777665432 122233445677777776532 22222356677
Q ss_pred CCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccc-cccCCCCCCcCeEe
Q 001145 969 TSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASL-PDELQHVTTLQSLE 1047 (1141)
Q Consensus 969 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~ 1047 (1141)
.+|+.+.+..+ ........+..+..++.+...... .....+..+.+|+.+.+..+ + ..+ ...+.++++|+.++
T Consensus 253 ~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 253 TDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSID 326 (394)
T ss_dssp SSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEEC
T ss_pred ccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccccccc-c-ceechhhhcCCCCCCEEE
Confidence 77888777653 222333456677777777665532 22345667777888777654 2 333 34567778888888
Q ss_pred eccCCCCccc-CcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccCC
Q 001145 1048 IHSCPAFKDL-PEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIREC 1099 (1141)
Q Consensus 1048 l~~n~~~~~l-p~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~c 1099 (1141)
|.++ ++.+ ...|.++++|+.+.+..+ ....-...|..|++|+.+++..+
T Consensus 327 lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 327 LPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred eCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 7643 3344 356777888888888654 33333446777888888887644
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=6.8e-09 Score=102.10 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=41.8
Q ss_pred CCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEee
Q 001145 993 IALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTI 1072 (1141)
Q Consensus 993 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l 1072 (1141)
++|+.|++++|.+....|..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444555555555555444333333445555555555555544333334555555555555
Q ss_pred ccCCCc
Q 001145 1073 SDCHTI 1078 (1141)
Q Consensus 1073 ~~n~~~ 1078 (1141)
++|++.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555543
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.88 E-value=2e-09 Score=119.10 Aligned_cols=272 Identities=17% Similarity=0.099 Sum_probs=144.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-hhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-FNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~l~~~l 239 (1141)
..++|++..++.+..++.... ..+.....|.|+|++|+|||++|+.+++. .... .+++..+.. ....+...+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~--~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAK--ARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH--HHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHH--ccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHHHHHHH
Confidence 468999999998888776320 00012346889999999999999999873 2222 233333221 122444555
Q ss_pred c---CcceeeeecCCCCCChHHHHHHHHhccCCC------------------CCcEEEEEcCchH-HHHhh-CC-CCcee
Q 001145 240 R---GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA------------------EGSRVIVTTRSAK-VATIV-GT-IPPYY 295 (1141)
Q Consensus 240 ~---~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ilvTtr~~~-v~~~~-~~-~~~~~ 295 (1141)
. .+..++++|++..-.......+...+.... ++.++|.||.... +...+ .. ...+.
T Consensus 85 ~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~ 164 (324)
T 1hqc_A 85 ANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEH 164 (324)
T ss_dssp TTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEE
T ss_pred HHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEe
Confidence 4 367899999997655555666655544321 2356666665432 21111 11 24789
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhhhhccc--------CChhhHHHhhcccccc-
Q 001145 296 LKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGSLMRFK--------REEGDWLYVQESDLWN- 366 (1141)
Q Consensus 296 l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~--------~~~~~w~~~~~~~~~~- 366 (1141)
+.+++.++..+++.+.+..... .-..+....+++.+.|.|-.+..+...+... -+.+....+.......
T Consensus 165 l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~ 242 (324)
T 1hqc_A 165 LEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDE 242 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCT
T ss_pred cCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccc
Confidence 9999999999998887643221 1223567889999999998776654433211 1122222221110000
Q ss_pred --cccCccchhHHHHhhccCCcchhhhhhccccccCCCceechHHHHH----HHHHcCCcccCcccccHHHHHHHHHH-H
Q 001145 367 --ACEGENRILPALRLSYSHLPSHLKCCFTFCSVFPKNFVIKKDNLTH----LWIAEGLIRSKDERKALEDIANDYFN-D 439 (1141)
Q Consensus 367 --~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~----~W~aeg~i~~~~~~~~~e~~~~~~~~-~ 439 (1141)
....+..+...+.-.|..=+......-..++ +.+..+.+ +-+.+|+|........+.+.|..||+ +
T Consensus 243 ~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lg-------i~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~ 315 (324)
T 1hqc_A 243 LGLEKRDREILEVLILRFGGGPVGLATLATALS-------EDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYP 315 (324)
T ss_dssp TCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTT-------SCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhC-------CCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcC
Confidence 0000001111111122111111222222222 23333322 45678999754433566788999998 9
Q ss_pred Hhhcccccc
Q 001145 440 LTWMSFFQD 448 (1141)
Q Consensus 440 L~~~~ll~~ 448 (1141)
+++|+++|+
T Consensus 316 ~~~~~~~~~ 324 (324)
T 1hqc_A 316 PPVGPLLEP 324 (324)
T ss_dssp CCC------
T ss_pred CCCCCCCCC
Confidence 999999985
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=9.4e-09 Score=101.06 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=87.9
Q ss_pred ccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeecc
Q 001145 995 LEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISD 1074 (1141)
Q Consensus 995 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~ 1074 (1141)
.+.+++++|.+.. +|..+ .++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5678888877664 55544 38899999999999888788899999999999999987765556679999999999999
Q ss_pred CCCccccCCCCCCCCCcceEeccCCc
Q 001145 1075 CHTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1075 n~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
|.+.+..+..+..+++|+.|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 98877666678999999999999995
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=1.1e-08 Score=100.79 Aligned_cols=86 Identities=19% Similarity=0.089 Sum_probs=42.1
Q ss_pred CCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEee
Q 001145 993 IALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTI 1072 (1141)
Q Consensus 993 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l 1072 (1141)
++|+.|++++|.+....|..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444444444445555555555555443332233445555555555555543322233555556666666
Q ss_pred ccCCCc
Q 001145 1073 SDCHTI 1078 (1141)
Q Consensus 1073 ~~n~~~ 1078 (1141)
++|++.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 655543
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=8.3e-09 Score=114.26 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=115.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-H----HH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-S----QL 235 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~----~l 235 (1141)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++...........+++..++... . .+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcC-------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHH
Confidence 46899999999999998754 222388999999999999999987421111111234444443211 1 23
Q ss_pred HHHh-------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHHh-hCCCCceeCCCCCHHHHHH
Q 001145 236 RRLL-------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VATI-VGTIPPYYLKGLSHDDCWT 306 (1141)
Q Consensus 236 ~~~l-------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~ 306 (1141)
.... .+++.++|+||++.-....++.+...+.....++++|+||+... +... ......+.+.+++.++..+
T Consensus 94 ~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~ 173 (323)
T 1sxj_B 94 KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLK 173 (323)
T ss_dssp HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHH
Confidence 3333 44588999999976666666667766665556778888886532 2111 2233479999999999999
Q ss_pred HHhhcccCCCCCCcCcchhhHHHHhhcCCchhH-HHHHhhh
Q 001145 307 LFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLA-AKALGSL 346 (1141)
Q Consensus 307 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~~~~ 346 (1141)
++...+..... .-..+....+++.++|.|.. +..+...
T Consensus 174 ~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 174 RLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99886532111 11234668899999999954 4444433
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=1.8e-08 Score=99.42 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=85.7
Q ss_pred cEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccC
Q 001145 996 EHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDC 1075 (1141)
Q Consensus 996 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n 1075 (1141)
+.+++++|.+. .+|..+. ++|+.|+|++|.+.+..|..+.++++|+.|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888887764 4555443 88999999999998877889999999999999999876544455789999999999999
Q ss_pred CCccccCCCCCCCCCcceEeccCCc
Q 001145 1076 HTIISLPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1076 ~~~~~lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
.+....+..+..+++|+.|++++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 8876655568999999999999996
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.79 E-value=7.6e-09 Score=117.92 Aligned_cols=268 Identities=18% Similarity=0.149 Sum_probs=146.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccccc---ceEEEEEeCcc-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSF---ELKIWVCVNED------- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~------- 230 (1141)
..++||+++++.+.+++...-. +.....+.|+|++|+||||||+.+++. ....+ ...+|+...+.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~---~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR---EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG---TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 6799999999999998874200 113458899999999999999999873 22222 23566654321
Q ss_pred -----------------hh---HHHHHHhc--CcceeeeecCCCCCC----hHHHHHHHHhccC-CCCCcEEEEEcCchH
Q 001145 231 -----------------FN---SQLRRLLR--GRRYLLVLDDVWNED----HEEWDKLRVSLSD-GAEGSRVIVTTRSAK 283 (1141)
Q Consensus 231 -----------------~~---~~l~~~l~--~k~~LlvlDdvw~~~----~~~~~~l~~~l~~-~~~gs~ilvTtr~~~ 283 (1141)
.. ..+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 11 12333343 458999999995311 2234444443422 233556777887653
Q ss_pred HHHhh------C-CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcC---CchhHHHHHh-hhhc--c-
Q 001145 284 VATIV------G-TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCG---GIPLAAKALG-SLMR--F- 349 (1141)
Q Consensus 284 v~~~~------~-~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~-~~l~--~- 349 (1141)
....+ . ....+.+.+++.++..+++.+.+........-..++.+.+++.++ |.|..+..+. .+.. .
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 32111 1 113789999999999999988642111111222345667777777 9998444332 2211 1
Q ss_pred ----cCChhhHHHhhcccccccccCccchhHHHHhhccCCcchhhhhhccccccCC-C-ceechHHHHHHH--HH--cCC
Q 001145 350 ----KREEGDWLYVQESDLWNACEGENRILPALRLSYSHLPSHLKCCFTFCSVFPK-N-FVIKKDNLTHLW--IA--EGL 419 (1141)
Q Consensus 350 ----~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~li~~W--~a--eg~ 419 (1141)
.-+.+.+..+.... ....+.-.+..+|.+.+..+..++...+ + ..+...++.+.. ++ .|
T Consensus 255 ~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred cCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 11223333222211 1123455567788777766655543211 1 123333333322 11 12
Q ss_pred cccCcccccHHHHHHHHHHHHhhccccccc
Q 001145 420 IRSKDERKALEDIANDYFNDLTWMSFFQDV 449 (1141)
Q Consensus 420 i~~~~~~~~~e~~~~~~~~~L~~~~ll~~~ 449 (1141)
+.. ........+++.|...+++...
T Consensus 324 ~~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 VEA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 111 1123456788999999999764
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1e-07 Score=105.63 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=116.4
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-----HHH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-----SQL 235 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-----~~l 235 (1141)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+++.......-...+.+..++... ..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKV 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC-------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHH
Confidence 45899999999999988765 233489999999999999999987421111111234444443221 123
Q ss_pred HHHh------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHHh-hCCCCceeCCCCCHHHHHHH
Q 001145 236 RRLL------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VATI-VGTIPPYYLKGLSHDDCWTL 307 (1141)
Q Consensus 236 ~~~l------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~l 307 (1141)
.+.. .+++.++|+|+++.-....++.+...+.....++++|+||.... +... ......+.+.+++.++..++
T Consensus 98 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~ 177 (327)
T 1iqp_A 98 KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKR 177 (327)
T ss_dssp HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHH
T ss_pred HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHH
Confidence 3322 15688999999977666777778777766566788888886632 1111 11123689999999999999
Q ss_pred HhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHhh
Q 001145 308 FKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALGS 345 (1141)
Q Consensus 308 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 345 (1141)
+...+..... .-..+....+++.++|.|..+..+..
T Consensus 178 l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 178 LRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9877643221 11234667899999999986655443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.69 E-value=1.1e-06 Score=99.89 Aligned_cols=317 Identities=13% Similarity=0.091 Sum_probs=178.2
Q ss_pred CCCCCCccEEEEeccCCCCCCC--CCCCCCCcceeeecCCCCceEeCCcccCCCCCCcccccceeecccccccccccccC
Q 001145 747 FPGLPNLTNIVLINCKRCENLP--ALGQLPFLRVIYMHGMHSVKSIDSGFYGRGSGRPFQSLQELSLIDFPSLEFWWSMN 824 (1141)
Q Consensus 747 ~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~l~~l~~~~~~~ 824 (1141)
|..+.+|+.+.|... ...+. .+..+++|+.+.+..+ ++.++.. +|.....|....++..-....
T Consensus 67 F~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~--------aF~~c~~L~~i~~p~~l~~i~-- 132 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRC--------TFSGCYALKSILLPLMLKSIG-- 132 (394)
T ss_dssp TTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT--------TTTTCTTCCCCCCCTTCCEEC--
T ss_pred hhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccch--------hhcccccchhhcccCceeeec--
Confidence 446788999998654 22232 3788999999999653 5555543 233333332222222111111
Q ss_pred ccccCCcccEEeeccCcccc-----CCCCCCCCCeEEEeccCc-chhcccccccceeeeeecCcCCcchhhhhhhcCCCC
Q 001145 825 TKEEFPSLVKLFINKCERLK-----NMPWFPSLQHLEFRNCNE-MIMKSATNFSTLLTLLIDGFTGQLVIFERLLENNPC 898 (1141)
Q Consensus 825 ~~~~~p~L~~L~i~~c~~L~-----~lp~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~ 898 (1141)
..+|.......+....... .+..+++|+.+.+.+.-. .....+..+..|+.+.+... ...+....+..++.
T Consensus 133 -~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 133 -VEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp -TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred -ceeeecccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 1122211111111111111 122356777777754432 22234455666766665442 22233455777778
Q ss_pred ccEEEEecCCCccccccccCCCCccCeeecccccccccccccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEcc
Q 001145 899 LTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIEN 978 (1141)
Q Consensus 899 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~ 978 (1141)
|+.+.+..+. ..+........+|+.+.+.... ...-...+..+..|+.+.+..+. .......+..+..|+.+....
T Consensus 210 L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 210 LENMEFPNSL--YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCBCCCCTTC--CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECS
T ss_pred cceeecCCCc--eEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCc
Confidence 8877766542 2333334455677777775432 22223456778888888887653 333334667777888877755
Q ss_pred CCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccc-cccCCCCCCcCeEeeccCCCCccc
Q 001145 979 CENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASL-PDELQHVTTLQSLEIHSCPAFKDL 1057 (1141)
Q Consensus 979 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~l 1057 (1141)
... ....+..+.+|+.+.+..+ +...-...|.++++|+.++|.++ + +.+ ...|.+|++|+.+++..+ +..+
T Consensus 286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc--ccEe
Confidence 321 1225677888888888654 33344556778888888888644 3 333 356778888888888664 3344
Q ss_pred -CcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceE
Q 001145 1058 -PEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHL 1094 (1141)
Q Consensus 1058 -p~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L 1094 (1141)
...|.++++|+.+++..+ +..+...|..+++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 357788888888888654 23334456677777654
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=6.1e-10 Score=124.58 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCccEEEEecCCCccccccc----cC-CCCccCeeeccccccccccccc-ccCCCCCCEEeEccCCCCccccccC----
Q 001145 896 NPCLTSLTISSCPNLRSISSK----LG-CLVALKSLTIRWCQELIALPQE-IQNLSLLESLEISECHSLTVLPEGI---- 965 (1141)
Q Consensus 896 ~~~L~~L~L~~~~~~~~~~~~----~~-~~~~L~~L~L~~~~~~~~l~~~-l~~l~~L~~L~Ls~~~~l~~~~~~~---- 965 (1141)
.+.|+.|++++|......... +. ..++|++|+|++|.+....... ...+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356778888877644322222 22 2356777777777654321111 2234566667777666443222111
Q ss_pred -CCCCCcCEEEEccCCCCC----CcccccCCCCCccEEeecCCCCCcc----cCcCccccCCcceEEecCCCCcc----c
Q 001145 966 -EGLTSLRSLSIENCENLA----YIPRGLGHLIALEHLTIMYCPSLAF----LPENFRNLTMLKSLCILSCPELA----S 1032 (1141)
Q Consensus 966 -~~l~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~----~ 1032 (1141)
...++|++|+|++|.... .++..+..+++|+.|++++|.+... ++..+...++|++|+|++|.+.. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234556666666654432 1233334555566666666554321 12233344445555555554432 1
Q ss_pred ccccCCCCCCcCeEeeccCCC
Q 001145 1033 LPDELQHVTTLQSLEIHSCPA 1053 (1141)
Q Consensus 1033 ~~~~l~~l~~L~~L~l~~n~~ 1053 (1141)
++..+...++|++|+|++|.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhCCCCCEEeccCCCC
Confidence 222233334455555554443
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=9.9e-10 Score=122.88 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=110.2
Q ss_pred CCccCeeeccccccccccc----cccc-CCCCCCEEeEccCCCCccccccC-CCCCCcCEEEEccCCCCCCcccc----c
Q 001145 920 LVALKSLTIRWCQELIALP----QEIQ-NLSLLESLEISECHSLTVLPEGI-EGLTSLRSLSIENCENLAYIPRG----L 989 (1141)
Q Consensus 920 ~~~L~~L~L~~~~~~~~l~----~~l~-~l~~L~~L~Ls~~~~l~~~~~~~-~~l~~L~~L~L~~~~~l~~l~~~----~ 989 (1141)
.+.|+.|++++|.+..... ..+. ..++|++|+|++|.+.......+ ..+++|+.|+|++|......... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4578899999988654322 2233 33689999999988654322222 34568899999998665432222 2
Q ss_pred -CCCCCccEEeecCCCCCcc----cCcCccccCCcceEEecCCCCcc----cccccCCCCCCcCeEeeccCCCCcc----
Q 001145 990 -GHLIALEHLTIMYCPSLAF----LPENFRNLTMLKSLCILSCPELA----SLPDELQHVTTLQSLEIHSCPAFKD---- 1056 (1141)
Q Consensus 990 -~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~---- 1056 (1141)
...++|++|++++|.+... ++..+..+++|++|+|++|.+.. .++..+...++|+.|+|++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3567899999999887542 33445667889999999998754 2355667778899999999886542
Q ss_pred cCcCCCCCCCcCEEeeccCCCccc
Q 001145 1057 LPEWIGNLSSLTSLTISDCHTIIS 1080 (1141)
Q Consensus 1057 lp~~l~~l~~L~~L~l~~n~~~~~ 1080 (1141)
++..+...++|+.|+|++|++...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 334455678899999999887644
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=1.7e-08 Score=111.57 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=79.6
Q ss_pred cccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCccccc--CCCCCccEEeecCC--C-C----CcccC
Q 001145 940 EIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIPRGL--GHLIALEHLTIMYC--P-S----LAFLP 1010 (1141)
Q Consensus 940 ~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~--~~l~~L~~L~l~~~--~-~----~~~~~ 1010 (1141)
.+..+|+|+.|+|++|.... ++. + .+++|++|+|..|.........+ ..+++|+.|+|+.+ . . ...+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 34455666666666552221 222 2 25566666666554332221122 24666666666421 1 0 00111
Q ss_pred cCc--cccCCcceEEecCCCCcccccccC---CCCCCcCeEeeccCCCCcc----cCcCCCCCCCcCEEeeccCCCcccc
Q 001145 1011 ENF--RNLTMLKSLCILSCPELASLPDEL---QHVTTLQSLEIHSCPAFKD----LPEWIGNLSSLTSLTISDCHTIISL 1081 (1141)
Q Consensus 1011 ~~~--~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~----lp~~l~~l~~L~~L~l~~n~~~~~l 1081 (1141)
..+ ..+++|+.|.|++|.+....+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|++++|.+....
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 246778888887777653222111 2467888888887765442 3444456788888888888655332
Q ss_pred CCCCCC-CCCcceEeccCCc
Q 001145 1082 PANLQH-LTTLQHLSIRECP 1100 (1141)
Q Consensus 1082 p~~~~~-l~~L~~L~l~~c~ 1100 (1141)
-..+.. + ...++++++.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 211111 1 2456776664
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.5e-07 Score=105.04 Aligned_cols=105 Identities=24% Similarity=0.177 Sum_probs=80.4
Q ss_pred EEeEccCCCCccccccCCCCCCcCEEEEcc-CCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCC
Q 001145 949 SLEISECHSLTVLPEGIEGLTSLRSLSIEN-CENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSC 1027 (1141)
Q Consensus 949 ~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~-~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 1027 (1141)
.++.+++..+..+|. +..+++|+.|+|++ |......+..|.++++|+.|+|++|.+....|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457777634556888 88888999999986 5554444467889999999999999888877888888999999999999
Q ss_pred CCcccccccCCCCCCcCeEeeccCCCCc
Q 001145 1028 PELASLPDELQHVTTLQSLEIHSCPAFK 1055 (1141)
Q Consensus 1028 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1055 (1141)
++....+..+..++ |+.|+|.+|++..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88654444455554 9999999887653
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=3.1e-08 Score=109.55 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=104.6
Q ss_pred ccCCCCCCEEeEccCCC---------CccccccCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCc
Q 001145 941 IQNLSLLESLEISECHS---------LTVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPE 1011 (1141)
Q Consensus 941 l~~l~~L~~L~Ls~~~~---------l~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 1011 (1141)
...+++|+.|.|..... ...+...+..+|+|+.|.|++|.... ++. + .+++|+.|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 44566777777754321 11233344668999999999974333 332 3 388999999998886543333
Q ss_pred Ccc--ccCCcceEEecCC--CC-----cccccccC--CCCCCcCeEeeccCCCCcccCcCC---CCCCCcCEEeeccCCC
Q 001145 1012 NFR--NLTMLKSLCILSC--PE-----LASLPDEL--QHVTTLQSLEIHSCPAFKDLPEWI---GNLSSLTSLTISDCHT 1077 (1141)
Q Consensus 1012 ~~~--~l~~L~~L~L~~n--~~-----~~~~~~~l--~~l~~L~~L~l~~n~~~~~lp~~l---~~l~~L~~L~l~~n~~ 1077 (1141)
.+. .+++|+.|+|+.+ .. ...+...+ ..+++|+.|++++|.+....+..+ ..+++|+.|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 333 6899999999642 11 11122223 357999999999998764332212 3578999999999877
Q ss_pred ccc----cCCCCCCCCCcceEeccCCc
Q 001145 1078 IIS----LPANLQHLTTLQHLSIRECP 1100 (1141)
Q Consensus 1078 ~~~----lp~~~~~l~~L~~L~l~~c~ 1100 (1141)
... ++..+.++++|+.|++++|.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 653 45555678999999999995
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=2.6e-07 Score=103.23 Aligned_cols=106 Identities=19% Similarity=0.099 Sum_probs=84.4
Q ss_pred CEEEEccCCCCCCcccccCCCCCccEEeecC-CCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCcCeEeecc
Q 001145 972 RSLSIENCENLAYIPRGLGHLIALEHLTIMY-CPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHS 1050 (1141)
Q Consensus 972 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 1050 (1141)
..++.++++.+..+|. +..+++|+.|+|++ |.+....+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3567777546777888 88899999999996 888777777888999999999999998777777888999999999999
Q ss_pred CCCCcccCcCCCCCCCcCEEeeccCCCcc
Q 001145 1051 CPAFKDLPEWIGNLSSLTSLTISDCHTII 1079 (1141)
Q Consensus 1051 n~~~~~lp~~l~~l~~L~~L~l~~n~~~~ 1079 (1141)
|.+.+..+..+..++ |+.|+|.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 886644444455555 9999999887754
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.47 E-value=9.6e-07 Score=99.70 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=113.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccc-------------------cce
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKS-------------------FEL 221 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~ 221 (1141)
.+++|++..++.+...+.... ..+.+.|+|++|+||||+|+.+.+....... +..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 89 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSS
T ss_pred hhccCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCc
Confidence 358999999999999987641 2247889999999999999999763221110 011
Q ss_pred EEEEEeCc-----chhHHHHHHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHH-hhC
Q 001145 222 KIWVCVNE-----DFNSQLRRLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VAT-IVG 289 (1141)
Q Consensus 222 ~~wv~~~~-----~~~~~l~~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~-~~~ 289 (1141)
.+.+.... ... .+.+.+ .+++.++|+||+..-+...++.+...+.....+..+|++|.... +.. ...
T Consensus 90 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 90 LIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp CEEEETTCSCCSSCHH-HHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT
T ss_pred eEEecccccCCHHHHH-HHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh
Confidence 23333221 111 222222 35678999999976666677778777766556677777776432 211 122
Q ss_pred CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 290 TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 290 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
....+.+.+++.++..+++.+.+-.... ....+....|++.++|.|..+..+.
T Consensus 169 r~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 169 RCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred heeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3357899999999999999876522111 1123456789999999998776554
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.38 E-value=1.1e-06 Score=96.96 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=111.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc-eEEEEEeCcc-----hhHH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-LKIWVCVNED-----FNSQ 234 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~-----~~~~ 234 (1141)
.+++|++..++.+.+++... ....+.++|++|+||||+|+.+++... ...+. ..+.+..+.. ....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK 88 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTSSHH
T ss_pred HHHhCCHHHHHHHHHHHhCC-------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHHHHH
Confidence 46899999999988877543 222388999999999999999987321 11111 1223333321 1123
Q ss_pred HHHHh------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchH-HHHh-hCCCCceeCCCCCHHHHHH
Q 001145 235 LRRLL------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAK-VATI-VGTIPPYYLKGLSHDDCWT 306 (1141)
Q Consensus 235 l~~~l------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~ 306 (1141)
+.... .+++.++|+|++..-....++.+...+.....+.++|+||.... +... ......+.+.+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~ 168 (319)
T 2chq_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (319)
T ss_dssp HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHH
T ss_pred HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHH
Confidence 33332 25688999999966555566667666665556778888776532 2111 2223479999999999999
Q ss_pred HHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 307 LFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 307 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
++...+-.... .-..+....+++.++|.+..+...
T Consensus 169 ~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 169 RLLEICEKEGV--KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 98877633221 122345678889999999865543
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.36 E-value=3.6e-05 Score=87.20 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=47.8
Q ss_pred cCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccc-cccCCCCCC
Q 001145 964 GIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASL-PDELQHVTT 1042 (1141)
Q Consensus 964 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~ 1042 (1141)
.|.++.+|+.+.+.. .....-...+.++++|+.+.+.. .+.......|.++.+|+++.|..+ + +.+ ...|.+|++
T Consensus 260 aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTT
T ss_pred eeeecccccEEeccc-ccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCCCC
Confidence 445555555555543 11111122444555555555542 222233334555555555555432 1 222 234555555
Q ss_pred cCeEeeccCCCCccc-CcCCCCCCCcCEEeeccC
Q 001145 1043 LQSLEIHSCPAFKDL-PEWIGNLSSLTSLTISDC 1075 (1141)
Q Consensus 1043 L~~L~l~~n~~~~~l-p~~l~~l~~L~~L~l~~n 1075 (1141)
|+.+.|..+ +..+ ...|.++++|+.+++.++
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 555555432 2222 234555555555555543
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.33 E-value=5.9e-07 Score=94.42 Aligned_cols=171 Identities=14% Similarity=0.068 Sum_probs=99.3
Q ss_pred ccccc---hHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHH
Q 001145 162 EVVGR---EEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRL 238 (1141)
Q Consensus 162 ~~vgr---~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~ 238 (1141)
.++|. +..++.+..+.... ..+.+.|+|++|+||||+|+.+++.. ......+.|+..++-... +.+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~-------~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 98 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD-------GVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI-STAL 98 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC-------SCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS-CGGG
T ss_pred hccCCCCCHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH-HHHH
Confidence 46653 34555555555432 23478899999999999999998732 222234566666542221 1111
Q ss_pred h--cCcceeeeecCCCCCChHH--HHHHHHhccCC-CCC-cEEEEEcCch---------HHHHhhCCCCceeCCCCCHHH
Q 001145 239 L--RGRRYLLVLDDVWNEDHEE--WDKLRVSLSDG-AEG-SRVIVTTRSA---------KVATIVGTIPPYYLKGLSHDD 303 (1141)
Q Consensus 239 l--~~k~~LlvlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtr~~---------~v~~~~~~~~~~~l~~l~~~~ 303 (1141)
+ -.++.++|+||++...... .+.+...+... ..+ .++|+||+.. .+...+.....+.+.+++.++
T Consensus 99 ~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~ 178 (242)
T 3bos_A 99 LEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDE 178 (242)
T ss_dssp GTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGG
T ss_pred HHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHH
Confidence 1 1456799999996533222 33343332211 122 2477777632 222222222578999999999
Q ss_pred HHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 304 CWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 304 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
..+++.+.+..... .-..+....+++.++|.+-.+..+.
T Consensus 179 ~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 179 KLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 99999887632111 1223566788899999887665443
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=7.7e-07 Score=89.78 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=80.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc---cc--ccceEEEEEeCcch----
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV---TK--SFELKIWVCVNEDF---- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~--~f~~~~wv~~~~~~---- 231 (1141)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++.... .. .....+++......
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK 94 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTC
T ss_pred cccccchHHHHHHHHHHhcC-------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCC
Confidence 46899999999999988753 2346789999999999999999873211 00 11223444332211
Q ss_pred -----hHHHHHHh-----cCcceeeeecCCCCCC--------hHHHHHHHHhccCCCCCcEEEEEcCchHHHH-------
Q 001145 232 -----NSQLRRLL-----RGRRYLLVLDDVWNED--------HEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT------- 286 (1141)
Q Consensus 232 -----~~~l~~~l-----~~k~~LlvlDdvw~~~--------~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~------- 286 (1141)
...+.+.+ .+++.++|+||+..-. ......+...+.. .+..+|.||.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ 172 (195)
T 1jbk_A 95 YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAA 172 (195)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHH
T ss_pred ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhcCHH
Confidence 11222322 3567899999995421 1113334333332 2345666666544221
Q ss_pred hhCCCCceeCCCCCHHHHHHHH
Q 001145 287 IVGTIPPYYLKGLSHDDCWTLF 308 (1141)
Q Consensus 287 ~~~~~~~~~l~~l~~~~~~~lf 308 (1141)
.......+.+.+++.++..+++
T Consensus 173 l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 173 LERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhceeecCCCCHHHHHHHh
Confidence 1122225778888888776654
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=0.00014 Score=82.31 Aligned_cols=129 Identities=15% Similarity=0.220 Sum_probs=81.8
Q ss_pred ccccCCCCCCEEeEccCCCCccccccCCCCCCcCEEEEccCCCCCCcc-cccCCCCCccEEeecCCCCCcccCcCccccC
Q 001145 939 QEIQNLSLLESLEISECHSLTVLPEGIEGLTSLRSLSIENCENLAYIP-RGLGHLIALEHLTIMYCPSLAFLPENFRNLT 1017 (1141)
Q Consensus 939 ~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 1017 (1141)
..|..+..|+.+.+.+.. ...-...|.++++|+.+.+.. . ...++ ..|.++.+|+.+.+..+ +...-...|.+++
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 357778888888886542 222233677888888888853 2 33333 36788889999988753 4444456788889
Q ss_pred CcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccC
Q 001145 1018 MLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDC 1075 (1141)
Q Consensus 1018 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n 1075 (1141)
+|+++.|..+ +...-...|.+|++|+.+++.++... . ..+..+.+|+.+.+..+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC--------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCCC
Confidence 9999988654 32222456888999999999876421 2 34566777888777654
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.14 E-value=8.2e-06 Score=87.93 Aligned_cols=174 Identities=17% Similarity=0.090 Sum_probs=97.9
Q ss_pred CccccchHHHHHHHHHHHhCCCC------CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS------GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---- 230 (1141)
.+++|.++.+++|.+.+...-.. .+....+.+.|+|++|+|||++|+.+++. ....| +.+..+.-
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~~~ 91 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVKKF 91 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCCCS
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHHhc
Confidence 56899999999998876431000 00012346899999999999999999873 22222 22222211
Q ss_pred ---hhH----HHHHHhcCcceeeeecCCCCC-----------ChHHHHHHHH---hcc--CCCCCcEEEEEcCchHHH-H
Q 001145 231 ---FNS----QLRRLLRGRRYLLVLDDVWNE-----------DHEEWDKLRV---SLS--DGAEGSRVIVTTRSAKVA-T 286 (1141)
Q Consensus 231 ---~~~----~l~~~l~~k~~LlvlDdvw~~-----------~~~~~~~l~~---~l~--~~~~gs~ilvTtr~~~v~-~ 286 (1141)
... .+......++.++++|++..- +......+.. .+. ....+..||.||...... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~ 171 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDP 171 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCH
Confidence 111 223333456789999999321 1111222222 222 123456777787654221 1
Q ss_pred h-hC---CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC-chhHHHH
Q 001145 287 I-VG---TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG-IPLAAKA 342 (1141)
Q Consensus 287 ~-~~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~ 342 (1141)
. .. ....+.+...+.++..+++...+...... .......+++.+.| .|-.+..
T Consensus 172 ~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 172 AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA---EDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp HHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC---TTCCHHHHHHHCTTCCHHHHHH
T ss_pred HHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC---CcCCHHHHHHHcCCCCHHHHHH
Confidence 1 11 12368899999999999998876432211 11224677777777 4434443
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.13 E-value=6.4e-06 Score=93.67 Aligned_cols=169 Identities=20% Similarity=0.237 Sum_probs=100.5
Q ss_pred CccccchHHH---HHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHH
Q 001145 161 SEVVGREEDK---EAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRR 237 (1141)
Q Consensus 161 ~~~vgr~~~~---~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~ 237 (1141)
.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. ....|. .+.........+++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f~---~l~a~~~~~~~ir~ 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-------HLHSMILWGPPGTGKTTLAEVIARY--ANADVE---RISAVTSGVKEIRE 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEEE---EEETTTCCHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCeE---EEEeccCCHHHHHH
Confidence 4688888777 6777777665 3457899999999999999999973 222332 22222211111211
Q ss_pred --------HhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEE-EcCchH--H-HHhhCCCCceeCCCCCHHHHH
Q 001145 238 --------LLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIV-TTRSAK--V-ATIVGTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 238 --------~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilv-Ttr~~~--v-~~~~~~~~~~~l~~l~~~~~~ 305 (1141)
...+++.++++|++..-.....+.+...+..+ ...+|. ||.+.. + .........+.+.+++.++..
T Consensus 94 ~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~ 171 (447)
T 3pvs_A 94 AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIE 171 (447)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHH
T ss_pred HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHH
Confidence 12467889999999765555556666666542 233443 544432 1 122233347889999999999
Q ss_pred HHHhhcccCCCC-----CCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 306 TLFKQRAFAPGE-----EYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 306 ~lf~~~~~~~~~-----~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
.++.+.+-.... ...-..+..+.+++.++|.+-.+..+
T Consensus 172 ~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 172 QVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 998887533111 11122345677888899988655433
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=8.1e-06 Score=91.25 Aligned_cols=174 Identities=12% Similarity=0.086 Sum_probs=108.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc-eEEEEEeCcch-hH----H
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-LKIWVCVNEDF-NS----Q 234 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-~~----~ 234 (1141)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+.+.......+. ..+.+..+... .. .
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcC-------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHH
Confidence 46899999999998887654 122388999999999999999987421111111 12333333211 11 1
Q ss_pred HHHHh----------------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-hCCCCceeC
Q 001145 235 LRRLL----------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-VGTIPPYYL 296 (1141)
Q Consensus 235 l~~~l----------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~~~~l 296 (1141)
+.... .+++-++++|++..-.......+...+.......++|++|... .+... ......+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~ 189 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189 (353)
T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEEC
T ss_pred HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEe
Confidence 22211 1345699999996655566667777666555566777776542 22111 111236889
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 297 KGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 297 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
.+++.++....+.+.+..... .-..+..+.|++.++|.|-.+..+
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999998876532221 122356788999999999865443
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.10 E-value=7e-06 Score=90.98 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=108.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-chhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-DFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~l~~~l 239 (1141)
.+++|++..++.+..++.... ..+.....|.|+|++|+|||++|+.+++. ....| +.+.... .....+...+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~--~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~~~~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAK--KRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKSGDLAAIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHH--HTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHH--hcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccchhHHHHHH
Confidence 469999999999988887531 00113446899999999999999999873 22222 2222221 1122344444
Q ss_pred --cCcceeeeecCCCCCChHHHHHHHHhccCCC------------------CCcEEEEEcCchH-HHHh-hC-CCCceeC
Q 001145 240 --RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA------------------EGSRVIVTTRSAK-VATI-VG-TIPPYYL 296 (1141)
Q Consensus 240 --~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ilvTtr~~~-v~~~-~~-~~~~~~l 296 (1141)
..+..++++|++..-.......+...+.... ++..+|.+|.... +... .. ....+.+
T Consensus 102 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l 181 (338)
T 3pfi_A 102 TNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 181 (338)
T ss_dssp HTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred HhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeC
Confidence 2567899999997666566666666665432 1245666665422 1111 11 1247899
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 297 KGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 297 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
.+++.++...++.+.+-.... .-..+....+++.+.|.|-.+..+
T Consensus 182 ~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 182 EFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999877632211 112345678888999998655443
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.06 E-value=1.4e-05 Score=91.17 Aligned_cols=149 Identities=14% Similarity=0.067 Sum_probs=91.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccc--eEEEEEeCcchhH-----------HHHHHhcCcceeeeecCCCCCC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE--LKIWVCVNEDFNS-----------QLRRLLRGRRYLLVLDDVWNED 255 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~-----------~l~~~l~~k~~LlvlDdvw~~~ 255 (1141)
...+.|+|++|+||||||+.+++. ....+. .++++....-... .+.+.++.+.-++++||++.-.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 457889999999999999999873 322221 2445554332111 1222223267799999995432
Q ss_pred h--HHHHHHHHhccC-CCCCcEEEEEcCc---------hHHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcc
Q 001145 256 H--EEWDKLRVSLSD-GAEGSRVIVTTRS---------AKVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFL 323 (1141)
Q Consensus 256 ~--~~~~~l~~~l~~-~~~gs~ilvTtr~---------~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~ 323 (1141)
. ...+.+...+.. ...|..||+||.. ..+...+.....+.+.+++.++..+++.+.+-.... .--.
T Consensus 208 ~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~--~i~~ 285 (440)
T 2z4s_A 208 GKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG--ELPE 285 (440)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC--CCCT
T ss_pred CChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCH
Confidence 2 233444444321 1356788888875 233333444457899999999999999887632111 1123
Q ss_pred hhhHHHHhhcCCchhHHH
Q 001145 324 PVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 324 ~~~~~i~~~~~g~Plai~ 341 (1141)
++...|++.+.|.+-.+.
T Consensus 286 e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 286 EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHH
Confidence 456788899999886544
No 179
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.06 E-value=0.00049 Score=77.45 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=62.8
Q ss_pred ccCCCCCCEEeEccCCCCcccc-ccCCCCCCcCEEEEccCCCCCCc-ccccCCCCCccEEeecCCCCCcccCcCccccCC
Q 001145 941 IQNLSLLESLEISECHSLTVLP-EGIEGLTSLRSLSIENCENLAYI-PRGLGHLIALEHLTIMYCPSLAFLPENFRNLTM 1018 (1141)
Q Consensus 941 l~~l~~L~~L~Ls~~~~l~~~~-~~~~~l~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 1018 (1141)
+..+.+|+.+.+..+ +..+. ..+.++..|+.+.+..+ ...+ ...+.++.+|+.+.+..+ +.......|.++++
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 444555666555432 22222 24455566666666442 2222 224555666666666432 22233344556666
Q ss_pred cceEEecCCCCcccccccCCCCCCcCeEeeccCCCCcccC-cCCCCCCCcCEEeecc
Q 001145 1019 LKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLP-EWIGNLSSLTSLTISD 1074 (1141)
Q Consensus 1019 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~lp-~~l~~l~~L~~L~l~~ 1074 (1141)
|+.+.+.++.+...-...+.++++|+.+.|..+ ++.++ ..|.++++|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 666666555443333344556666666666432 23332 4455666666665543
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=1.1e-05 Score=94.58 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=103.5
Q ss_pred CccccchHHHHHHHHHHHhCC------CC----CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc
Q 001145 161 SEVVGREEDKEAMIDLLASNG------AS----GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~------~~----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 230 (1141)
.+++|++..++++.+++.... .. ......+.+.|+|++|+||||+|+.+++.. .+. .+.+..++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~~-~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GYD-ILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TCE-EEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEeCCCc
Confidence 469999999999999987510 00 001134688999999999999999998732 122 233443332
Q ss_pred hhH-HHHHHh----------------------cCcceeeeecCCCCCC---hHHHHHHHHhccCCCCCcEEEEEcCchH-
Q 001145 231 FNS-QLRRLL----------------------RGRRYLLVLDDVWNED---HEEWDKLRVSLSDGAEGSRVIVTTRSAK- 283 (1141)
Q Consensus 231 ~~~-~l~~~l----------------------~~k~~LlvlDdvw~~~---~~~~~~l~~~l~~~~~gs~ilvTtr~~~- 283 (1141)
... .+...+ .+++.+|++|++..-. ...+..+...+... +..||+++....
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~ 191 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNL 191 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCC
Confidence 221 111111 2567899999995422 22234454444332 233555544321
Q ss_pred --HHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch-hHHHHHhh
Q 001145 284 --VATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP-LAAKALGS 345 (1141)
Q Consensus 284 --v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 345 (1141)
+.........+.+.+++.++..+.+.+.+..... .-..+....|++.++|.+ -|+..+..
T Consensus 192 ~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~--~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 192 PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF--KLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2222222336889999999999988776543221 112345788999999954 45555543
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.01 E-value=1.4e-05 Score=88.00 Aligned_cols=165 Identities=18% Similarity=0.112 Sum_probs=103.3
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHH----HH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQ----LR 236 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~----l~ 236 (1141)
.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++.. . ...+.+..+...... +.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~------~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~~~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK------IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDCKIDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC------CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTCCHHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC------CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccccCHHHHHHHHH
Confidence 568999999999999988541 23477888889999999999998732 1 123445544332222 33
Q ss_pred HHhc-----CcceeeeecCCCCCC-hHHHHHHHHhccCCCCCcEEEEEcCchH-----HHHhhCCCCceeCCCCCHHHHH
Q 001145 237 RLLR-----GRRYLLVLDDVWNED-HEEWDKLRVSLSDGAEGSRVIVTTRSAK-----VATIVGTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 237 ~~l~-----~k~~LlvlDdvw~~~-~~~~~~l~~~l~~~~~gs~ilvTtr~~~-----v~~~~~~~~~~~l~~l~~~~~~ 305 (1141)
+... +++.++++|++..-. ....+.+...+.....+.++|+||.... +...+ ..+.+.+++.++..
T Consensus 95 ~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 95 NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKI 171 (324)
T ss_dssp HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHH
T ss_pred HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHH
Confidence 3332 367899999996554 4556666666554445667888876532 22222 36899999988843
Q ss_pred HHH-------hhcccCCCCCCcCcc-hhhHHHHhhcCCchhHHH
Q 001145 306 TLF-------KQRAFAPGEEYLNFL-PVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 306 ~lf-------~~~~~~~~~~~~~~~-~~~~~i~~~~~g~Plai~ 341 (1141)
+++ .+.+.... ..-.. +....+++.++|.+-.+.
T Consensus 172 ~il~~~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 172 EMMKQMIRRLTEICKHEG--IAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHHhCCCCHHHHH
Confidence 332 22221111 11113 567788899988776443
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=1.5e-05 Score=89.05 Aligned_cols=176 Identities=11% Similarity=0.054 Sum_probs=105.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc--cccc--ccc----------------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE--KVTK--SFE---------------- 220 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~--~~~~--~f~---------------- 220 (1141)
.+++|.+..++.+..++... +.... +.|+|+.|+||||+|+.++... ...+ .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~-----~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP-----RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT-----TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhC-----CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899998888887766222 11223 8999999999999999887621 0000 000
Q ss_pred ----eEEEEEeCcc-------hhHHHHHHh--------------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEE
Q 001145 221 ----LKIWVCVNED-------FNSQLRRLL--------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRV 275 (1141)
Q Consensus 221 ----~~~wv~~~~~-------~~~~l~~~l--------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~i 275 (1141)
..+.+..+.. ....+.+.. .+++-++|+|++..-+......+...+.....+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEE
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEE
Confidence 0122221110 112233222 225569999999776666667777766554556777
Q ss_pred EEEcCch-HHHHh-hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCc-chhhHHHHhhcCCchhHHHHHh
Q 001145 276 IVTTRSA-KVATI-VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNF-LPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 276 lvTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
|++|... .+... ......+.+.+++.++..+.+.+.+-.... .-. .+....|++.++|.+-.+..+.
T Consensus 168 Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777652 22221 222357899999999999999877632111 111 3567889999999987655443
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.97 E-value=5.8e-05 Score=80.41 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=87.9
Q ss_pred CccccchHHHHHHHH-------HHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch--
Q 001145 161 SEVVGREEDKEAMID-------LLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF-- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~-------~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-- 231 (1141)
..++|....+++++. .+... .....+.+.|+|++|+|||++|+.+++. ....| +.+..++.+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~----~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~~g 103 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS----DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKMIG 103 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC----SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGCTT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc----CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHhcC
Confidence 356777766666655 33322 1225678999999999999999999873 22222 222222111
Q ss_pred ----------hHHHHHHhcCcceeeeecCCCCC----------ChHHHHHHHHhccC---CCCCcEEEEEcCchHHHHhh
Q 001145 232 ----------NSQLRRLLRGRRYLLVLDDVWNE----------DHEEWDKLRVSLSD---GAEGSRVIVTTRSAKVATIV 288 (1141)
Q Consensus 232 ----------~~~l~~~l~~k~~LlvlDdvw~~----------~~~~~~~l~~~l~~---~~~gs~ilvTtr~~~v~~~~ 288 (1141)
...+......+..+|++|++..- .......+...+.. ......||.||.........
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 104 FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchh
Confidence 11223333466889999998321 11222334443332 12234466677766443321
Q ss_pred ---CC-CCceeCCCCCH-HHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC
Q 001145 289 ---GT-IPPYYLKGLSH-DDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG 335 (1141)
Q Consensus 289 ---~~-~~~~~l~~l~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 335 (1141)
+. ...+.+.+++. ++...++.+.. .-..+....+++.+.|
T Consensus 184 ~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-------~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 184 EMLNAFSTTIHVPNIATGEQLLEALELLG-------NFKDKERTTIAQQVKG 228 (272)
T ss_dssp TCTTTSSEEEECCCEEEHHHHHHHHHHHT-------CSCHHHHHHHHHHHTT
T ss_pred hhhcccceEEcCCCccHHHHHHHHHHhcC-------CCCHHHHHHHHHHhcC
Confidence 11 23678888888 66666665531 1112346778888877
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=1.4e-05 Score=75.77 Aligned_cols=112 Identities=20% Similarity=0.080 Sum_probs=70.0
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-HHHHHHh-
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-SQLRRLL- 239 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~l~~~l- 239 (1141)
+++|+...+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.... .....+ +..+.... ......+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~v--~~~~~~~~~~~~~~~~~ 73 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEFV--YRELTPDNAPQLNDFIA 73 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCCE--EEECCTTTSSCHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCEE--EECCCCCcchhhhcHHH
Confidence 578999999999988865411 1124789999999999999999874221 111222 44432211 1111111
Q ss_pred cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc
Q 001145 240 RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS 281 (1141)
Q Consensus 240 ~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~ 281 (1141)
..+.-.+++|++..-.......+...+.......++|.||..
T Consensus 74 ~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 74 LAQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HHTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred HcCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 224468899999776666677777777555556678777764
No 185
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=2.5e-06 Score=81.97 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=51.3
Q ss_pred CcceEEecCCCCcccccccCCCCCCcCeEeeccCCCCccc-CcCCCCC----CCcCEEeeccCCCccc-cCCCCCCCCCc
Q 001145 1018 MLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDL-PEWIGNL----SSLTSLTISDCHTIIS-LPANLQHLTTL 1091 (1141)
Q Consensus 1018 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~l-p~~l~~l----~~L~~L~l~~n~~~~~-lp~~~~~l~~L 1091 (1141)
+|++|++++|.++..--..+.++++|++|+|++|..++.- -..+..+ ++|++|+|++|+.++. --..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555543332234556777777777777654431 1223332 3688888888875433 22234567888
Q ss_pred ceEeccCCcchHH
Q 001145 1092 QHLSIRECPRLES 1104 (1141)
Q Consensus 1092 ~~L~l~~c~~L~~ 1104 (1141)
+.|++++||.++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 8888888886653
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.91 E-value=2.3e-05 Score=85.54 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=88.8
Q ss_pred ccccchHHHHHHHHHHHhC---------CCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-h
Q 001145 162 EVVGREEDKEAMIDLLASN---------GASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-F 231 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~---------~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~ 231 (1141)
.++|.+..++.|.+.+... +.. .......+.|+|++|+|||++|+.+++............++.++.. +
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~-~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLA-HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCC-SSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCC-CCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 5788888888887665421 000 0123447899999999999999988763221111111122332211 1
Q ss_pred --------hHHHHHHh-cCcceeeeecCCCCC---------ChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhh-----
Q 001145 232 --------NSQLRRLL-RGRRYLLVLDDVWNE---------DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIV----- 288 (1141)
Q Consensus 232 --------~~~l~~~l-~~k~~LlvlDdvw~~---------~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~----- 288 (1141)
...+...+ ..+..++++|++..- .......+...+.....+..||.||.........
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPG 190 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTT
T ss_pred hhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHH
Confidence 11223332 224569999999522 4455566777676656677888888654321110
Q ss_pred ---CCCCceeCCCCCHHHHHHHHhhcc
Q 001145 289 ---GTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 289 ---~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.....+.+.+++.++..+++.+.+
T Consensus 191 l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 191 FRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp HHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 112468899999999999988776
No 187
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.91 E-value=1.5e-05 Score=79.59 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++||+.+++.+.+.+... ....+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR-------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC-------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988653 2346789999999999999999873
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.87 E-value=0.00017 Score=79.20 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccc--------------------cccceEEEEE
Q 001145 167 EEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVT--------------------KSFELKIWVC 226 (1141)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~ 226 (1141)
++..+.+...+... .-.+.+.++|+.|+||||+|+.+.+..... .+++ ..++.
T Consensus 8 ~~~~~~l~~~i~~~------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 80 (334)
T 1a5t_A 8 RPDFEKLVASYQAG------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLA 80 (334)
T ss_dssp HHHHHHHHHHHHTT------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEEC
T ss_pred HHHHHHHHHHHHcC------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEe
Confidence 44566666666644 123578999999999999999987632111 1234 34444
Q ss_pred eC---cchh-HHHH---HHh-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-hCCCC
Q 001145 227 VN---EDFN-SQLR---RLL-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-VGTIP 292 (1141)
Q Consensus 227 ~~---~~~~-~~l~---~~l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~ 292 (1141)
.. .... ..++ +.+ .+++-++|+|++..-.....+.+...+.....++.+|++|... .+... .....
T Consensus 81 ~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 81 PEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp CCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce
Confidence 32 2221 1222 222 3567899999997666666777887787655667777766553 23222 23334
Q ss_pred ceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHHh
Q 001145 293 PYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKALG 344 (1141)
Q Consensus 293 ~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 344 (1141)
.+.+.++++++..+.+.+.. ....+.+..+++.++|.|..+..+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred eeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 79999999999999888765 1112345789999999998765544
No 189
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.82 E-value=6e-05 Score=84.62 Aligned_cols=95 Identities=15% Similarity=0.013 Sum_probs=59.5
Q ss_pred ceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcC-------------c----hHHHHhhCCCCceeCCCCCHHHHH
Q 001145 243 RYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTR-------------S----AKVATIVGTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 243 ~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr-------------~----~~v~~~~~~~~~~~l~~l~~~~~~ 305 (1141)
+.++++|++..-.......+...+...... .++++|. . ..+...+ ..+.+.+++.++..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHH
Confidence 359999999766666677777766554433 3444443 1 2222222 34789999999999
Q ss_pred HHHhhcccCCCCCCcCcchhhHHHHhhcC-CchhHHHHH
Q 001145 306 TLFKQRAFAPGEEYLNFLPVGKEIVKKCG-GIPLAAKAL 343 (1141)
Q Consensus 306 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~~ 343 (1141)
+++.+.+-.... .-..+....+++.+. |.|-.+..+
T Consensus 266 ~il~~~~~~~~~--~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 266 QILRIRCEEEDV--EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHHHHHHHHTTC--CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 999877632211 122345677888887 777655443
No 190
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.82 E-value=9.3e-06 Score=76.69 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=65.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh-
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL- 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l- 239 (1141)
-.++|++..+.++.+.+.... . ...-|.|+|.+|+|||++|+.+++... ..+.+..+.-........+
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~--~---~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~~~~~~~~~ 72 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA--K---RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLIDMPMELLQ 72 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH--T---CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHHHCHHHHHH
T ss_pred cCceeCCHHHHHHHHHHHHHh--C---CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCChHhhhhHHH
Confidence 357899988888888776431 1 112477999999999999999987422 1222322221111122222
Q ss_pred cCcceeeeecCCCCCChHHHHHHHHhccCC-CCCcEEEEEcCc
Q 001145 240 RGRRYLLVLDDVWNEDHEEWDKLRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 240 ~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
..+.-.+++|++..-.......+...+... ..+.++|.||..
T Consensus 73 ~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 73 KAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp HTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred hCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 233568899999766666666666666543 345678887754
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.82 E-value=8e-05 Score=81.69 Aligned_cols=144 Identities=16% Similarity=0.066 Sum_probs=82.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHH-----------HHHHhcCcceeeeecCCCCCCh-
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQ-----------LRRLLRGRRYLLVLDDVWNEDH- 256 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-----------l~~~l~~k~~LlvlDdvw~~~~- 256 (1141)
...+.|+|++|+||||||+.+++..... .+ ..+++....-.... +.+.. .+..++++||+..-..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~ 113 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK 113 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC
Confidence 3468899999999999999998732111 11 24455544322111 11112 2367999999954322
Q ss_pred -HHHHHHHHhccC-CCCCcEEEEEcCch---------HHHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchh
Q 001145 257 -EEWDKLRVSLSD-GAEGSRVIVTTRSA---------KVATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPV 325 (1141)
Q Consensus 257 -~~~~~l~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~ 325 (1141)
...+.+...+.. ...|..||+||... .+...+.....+.+.+ +.++..+++.+.+..... .--.++
T Consensus 114 ~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~ 190 (324)
T 1l8q_A 114 ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEV 190 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHH
Confidence 223334333321 12456788877532 2333333334689999 999999999887642221 112345
Q ss_pred hHHHHhhcCCchhH
Q 001145 326 GKEIVKKCGGIPLA 339 (1141)
Q Consensus 326 ~~~i~~~~~g~Pla 339 (1141)
...+++.+ |..-.
T Consensus 191 l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 191 IDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHC-SSHHH
T ss_pred HHHHHHhC-CCHHH
Confidence 67778888 76543
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.82 E-value=8.7e-05 Score=78.67 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHHHh---CCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 161 SEVVGREEDKEAMIDLLAS---NGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~---~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
.+++|.+..++.+.+++.. ... ..+....+.|.|+|++|+|||++|+.+++. .... .+.+..+.-
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEVIG 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhhcc
Confidence 4689998888777665432 100 000123356889999999999999999873 2222 223333221
Q ss_pred ------hhHHHHHHhcCcceeeeecCCCCC------------Ch---HHHHHHHHhccC--CCCCcEEEEEcCchH-HHH
Q 001145 231 ------FNSQLRRLLRGRRYLLVLDDVWNE------------DH---EEWDKLRVSLSD--GAEGSRVIVTTRSAK-VAT 286 (1141)
Q Consensus 231 ------~~~~l~~~l~~k~~LlvlDdvw~~------------~~---~~~~~l~~~l~~--~~~gs~ilvTtr~~~-v~~ 286 (1141)
....+.......+.++++|++..- .. .....+...+.. ...+..||.||.... +..
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 011233333456789999999532 01 112233333322 123456666665533 211
Q ss_pred h-hC---CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHH
Q 001145 287 I-VG---TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKAL 343 (1141)
Q Consensus 287 ~-~~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 343 (1141)
. .. -...+.+...+.++..+++...+..... ..........+++.+.|.+- .+..+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 1 11 1236779999999999999887632221 11111134678888888654 44333
No 193
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0014 Score=73.63 Aligned_cols=131 Identities=14% Similarity=0.053 Sum_probs=87.7
Q ss_pred cCCCCCCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCCCcccCcCccccCCcceEEecCCCCcccccccCCCCCCc
Q 001145 964 GIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTTL 1043 (1141)
Q Consensus 964 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 1043 (1141)
.+..+.+|+.+.+.. .....-...+.++..|+.+.+..+ +...-...+.++.+|+.+.+..+ +...-...+.++++|
T Consensus 212 ~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 445566777777654 222222335677888888888764 34444566788888999888654 222223467788999
Q ss_pred CeEeeccCCCCcccCcCCCCCCCcCEEeeccCCCccccCCCCCCCCCcceEeccC
Q 001145 1044 QSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTLQHLSIRE 1098 (1141)
Q Consensus 1044 ~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~~~~lp~~~~~l~~L~~L~l~~ 1098 (1141)
+.+.+.++.....-...|.++++|+.+.|..+ ....-...|..|++|+.+.+..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 99999876644344567888999999999753 3233345688889999988854
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=8.6e-06 Score=78.24 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=19.9
Q ss_pred CCcCEEEEccCCCCCCcccccCCCCCccEEeecCCCC
Q 001145 969 TSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPS 1005 (1141)
Q Consensus 969 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~ 1005 (1141)
..|+.|++++|.+...--..+.++++|+.|++++|..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc
Confidence 3566666666654433223345555566666665543
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.77 E-value=0.00017 Score=78.88 Aligned_cols=175 Identities=15% Similarity=0.108 Sum_probs=100.8
Q ss_pred CccccchHHHHHHHHHHHhC-----CCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc------
Q 001145 161 SEVVGREEDKEAMIDLLASN-----GASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE------ 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~-----~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------ 229 (1141)
.+++|.+..++.|.+.+.-. .........+-|.++|++|+|||+||+++++. ....| +.+..+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~ 92 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWM 92 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHHHHHTTTG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchHHHhhccc
Confidence 56899999999988876311 00111223457899999999999999999873 22222 2233221
Q ss_pred -chhHHHH----HHhcCcceeeeecCCCCCCh-----------HHHHHHHHhcc---CCCCCcEEEEEcCchH-----HH
Q 001145 230 -DFNSQLR----RLLRGRRYLLVLDDVWNEDH-----------EEWDKLRVSLS---DGAEGSRVIVTTRSAK-----VA 285 (1141)
Q Consensus 230 -~~~~~l~----~~l~~k~~LlvlDdvw~~~~-----------~~~~~l~~~l~---~~~~gs~ilvTtr~~~-----v~ 285 (1141)
.....++ ..-..++.+|++|++..-.. .....+...+. ....+..||.||.... +.
T Consensus 93 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~ 172 (322)
T 3eie_A 93 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172 (322)
T ss_dssp GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHH
Confidence 1111222 22345668999999942110 11233433332 2334556666776532 22
Q ss_pred HhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCc-hhHHHHHh
Q 001145 286 TIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGI-PLAAKALG 344 (1141)
Q Consensus 286 ~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 344 (1141)
. .-...+.+...+.++..+++..++..... ..-......+++.+.|. +-.|..+.
T Consensus 173 ~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 173 R--RFERRIYIPLPDLAARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp H--HCCEEEECCCCCHHHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred c--ccCeEEEeCCCCHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2 22346788889999999999987643221 11123567888888874 44454444
No 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=0.00015 Score=80.10 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=103.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccc-eEEEEEeCcchh-H----H
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFE-LKIWVCVNEDFN-S----Q 234 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~-~----~ 234 (1141)
..++|.+..++.+...+... ++..+.++|++|+||||+|+.++..... ..+. ....+..+.... . .
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-------~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-------KLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-------CCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHhcCcHHHHHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHHHH
Confidence 35789888888888877754 2223889999999999999999873211 1111 122233332111 1 2
Q ss_pred HHHHh------cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch-HHHHh-hCCCCceeCCCCCHHHHHH
Q 001145 235 LRRLL------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA-KVATI-VGTIPPYYLKGLSHDDCWT 306 (1141)
Q Consensus 235 l~~~l------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~ 306 (1141)
+.... .+.+-++|+|++..-.....+.+...+......+++|++|... .+... ......+.+.+++.++..+
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 22222 1346789999996555566666766665545566777766543 22111 1222368899999999888
Q ss_pred HHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHH
Q 001145 307 LFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAK 341 (1141)
Q Consensus 307 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 341 (1141)
.+.+.+-.... .-.....+.+++.++|.+--+.
T Consensus 177 ~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 177 RIANVLVHEKL--KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 88765522111 1122456778889999887443
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.73 E-value=0.00016 Score=80.23 Aligned_cols=178 Identities=11% Similarity=0.052 Sum_probs=100.1
Q ss_pred CccccchHHHHHHHHHHHhC----CC-CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 161 SEVVGREEDKEAMIDLLASN----GA-SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~----~~-~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
.+++|.+..++.|.+.+... .. .......+.|.|+|++|+|||++|+++++. .... .+.+..+.-
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSKWV 158 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcccc
Confidence 46899999999988876421 00 000123457899999999999999999873 2222 233443321
Q ss_pred --hhHHH----HHHhcCcceeeeecCCCCC-----------ChHHHHHHHHhccCC----CCCcEEEEEcCch-HHHHhh
Q 001145 231 --FNSQL----RRLLRGRRYLLVLDDVWNE-----------DHEEWDKLRVSLSDG----AEGSRVIVTTRSA-KVATIV 288 (1141)
Q Consensus 231 --~~~~l----~~~l~~k~~LlvlDdvw~~-----------~~~~~~~l~~~l~~~----~~gs~ilvTtr~~-~v~~~~ 288 (1141)
....+ ......++.+|+||++..- ....+..+...+... ..+..||.||... .+...+
T Consensus 159 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 238 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAA 238 (357)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHH
Confidence 11122 2223456789999998211 011223344444321 2344555566542 222111
Q ss_pred --CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC-chhHHHHHhh
Q 001145 289 --GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG-IPLAAKALGS 345 (1141)
Q Consensus 289 --~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 345 (1141)
.....+.+...+.++..+++...+-.... .-.......|++.+.| .+-.+..+..
T Consensus 239 ~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 239 RRRLVKRLYIPLPEASARKQIVINLMSKEQC--CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHHTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HhhCceEEEeCCcCHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 12236788889999988888776532211 1122456778888888 5555665544
No 198
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.72 E-value=4.9e-05 Score=81.22 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=84.2
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccccc------ccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTK------SFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~---- 230 (1141)
..+.||++++++|...|...-. +.....+.|+|++|+|||++|+.|++...... .|. .+.+.....
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~---~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~-~v~INc~~~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM---SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFD-YIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEE-EEEEETTCCC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceE-EEEEeccccCCHH
Confidence 3488999999999988775411 12456889999999999999999988432111 232 344443221
Q ss_pred -------------------hhHHHHHHh------cCcceeeeecCCCCCChHHHHHHHHhccC-CCCCc--EEEEEcCch
Q 001145 231 -------------------FNSQLRRLL------RGRRYLLVLDDVWNEDHEEWDKLRVSLSD-GAEGS--RVIVTTRSA 282 (1141)
Q Consensus 231 -------------------~~~~l~~~l------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~-~~~gs--~ilvTtr~~ 282 (1141)
....+.+.+ .+++++++||++..-. ..+.+...+.. ....+ .||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCc
Confidence 011233332 3567899999985432 22333333221 01222 233333321
Q ss_pred -----HH----HHhhCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 283 -----KV----ATIVGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 283 -----~v----~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.+ ...++ ...+.+.+.+.++-.+++.+++
T Consensus 174 d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11 11221 1368999999999999888775
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.70 E-value=0.00044 Score=76.37 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=97.5
Q ss_pred CccccchHHHHHHHHHHHhC----C-CCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc------
Q 001145 161 SEVVGREEDKEAMIDLLASN----G-ASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE------ 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~----~-~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------ 229 (1141)
.+++|.+..++.|.+.+... . ........+-|.|+|++|+|||+||+++++.. ...| +.+..+.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~~l~~~~~ 125 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSSDLVSKWM 125 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHHHHHSCC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHHHHhhhhc
Confidence 46899999998888776311 0 00111223468899999999999999999732 2222 2222211
Q ss_pred -chhHHH----HHHhcCcceeeeecCCCCCCh-----------HHHHHHHHhcc---CCCCCcEEEEEcCchH-HHHhh-
Q 001145 230 -DFNSQL----RRLLRGRRYLLVLDDVWNEDH-----------EEWDKLRVSLS---DGAEGSRVIVTTRSAK-VATIV- 288 (1141)
Q Consensus 230 -~~~~~l----~~~l~~k~~LlvlDdvw~~~~-----------~~~~~l~~~l~---~~~~gs~ilvTtr~~~-v~~~~- 288 (1141)
.....+ ......++.+|++|++..-.. .....+...+. ....+..||.||.... +...+
T Consensus 126 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 126 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp --CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHH
Confidence 011122 222345788999999953211 01223333332 1234555665665431 11111
Q ss_pred -CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC-chhHHHHHh
Q 001145 289 -GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG-IPLAAKALG 344 (1141)
Q Consensus 289 -~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 344 (1141)
.....+.+...+.++..+++..++...... .-......|++.+.| .+-.|..+.
T Consensus 206 rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 206 RRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 233467889999999999998876332111 112345778888888 444454443
No 200
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.68 E-value=0.00017 Score=76.50 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=66.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh-
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL- 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l- 239 (1141)
..++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++..... .. ..+.+..+.-....+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-----~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-----LDKPVLIIGERGTGKELIASRLHYLSSRW-QG-PFISLNCAALNENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-----SCSCEEEECCTTSCHHHHHHHHHHTSTTT-TS-CEEEEEGGGSCHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHHHhcCcc-CC-CeEEEecCCCChhHHHHHhc
Confidence 3578999998888877764311 12357799999999999999998742211 11 1334444432222222111
Q ss_pred -------------------cCcceeeeecCCCCCChHHHHHHHHhccCC-----------CCCcEEEEEcCc
Q 001145 240 -------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDG-----------AEGSRVIVTTRS 281 (1141)
Q Consensus 240 -------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtr~ 281 (1141)
....-+++||++..-.......+...+..+ ..+.+||.||..
T Consensus 79 g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp CCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 123458999999766655666666555432 134678888765
No 201
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.66 E-value=0.00075 Score=73.40 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=99.3
Q ss_pred CccccchHHHHHHHHHHHhC-----CCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc------
Q 001145 161 SEVVGREEDKEAMIDLLASN-----GASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE------ 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~-----~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------ 229 (1141)
.+++|.++.++.|.+.+.-. ...+.....+-|.++|++|+|||+||+++++... ...| +.+..+.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVSKWL 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCCSSC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHhhhh
Confidence 46899998888887766321 0011112346788999999999999999997321 1112 2233221
Q ss_pred -chhHHHH----HHhcCcceeeeecCCCCC-------Ch----HHHHHHHHhccC---CCCCcEEEEEcCch-HHHHhh-
Q 001145 230 -DFNSQLR----RLLRGRRYLLVLDDVWNE-------DH----EEWDKLRVSLSD---GAEGSRVIVTTRSA-KVATIV- 288 (1141)
Q Consensus 230 -~~~~~l~----~~l~~k~~LlvlDdvw~~-------~~----~~~~~l~~~l~~---~~~gs~ilvTtr~~-~v~~~~- 288 (1141)
.....++ ..-..++.+|++|++..- .. .....+...+.. ...+..||.||... .+...+
T Consensus 88 g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~ 167 (322)
T 1xwi_A 88 GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR 167 (322)
T ss_dssp CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHH
Confidence 1111222 223467789999999431 00 111223333322 22444555566432 111111
Q ss_pred -CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCc-hhHHHHHhh
Q 001145 289 -GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGI-PLAAKALGS 345 (1141)
Q Consensus 289 -~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 345 (1141)
.-...+.+...+.++..+++..+.-..... ........|++.+.|. +-.+..+..
T Consensus 168 rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 168 RRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred hhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 233467888899999999998875322111 1223567889999887 444555543
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=3.8e-05 Score=79.95 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=42.4
Q ss_pred CCCcccEEEccCCCCcccc---ccccccccCceEecCCCcccccchhhhcCC--CCcEEecCCCCCCcccCc-------c
Q 001145 539 SFRYLRTLNLSGSGIKKLH---SSISCLISLRYLNMSNTLIERLPESICDLV--YLQVLNLSDCHDLIELPK-------R 606 (1141)
Q Consensus 539 ~l~~Lr~L~L~~~~l~~lp---~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~-------~ 606 (1141)
+++.|+.|+|++|.++.++ ..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|......|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4555666666666655432 3445666666666666666655 2344444 666666666654333331 2
Q ss_pred ccCCCCCcEEE
Q 001145 607 LASIFQLRHLM 617 (1141)
Q Consensus 607 i~~L~~L~~L~ 617 (1141)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34455555554
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=8.3e-06 Score=80.99 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=22.0
Q ss_pred cccCCCCCCEEeEccC-CCCcc----ccccCCCCCCcCEEEEccCCC
Q 001145 940 EIQNLSLLESLEISEC-HSLTV----LPEGIEGLTSLRSLSIENCEN 981 (1141)
Q Consensus 940 ~l~~l~~L~~L~Ls~~-~~l~~----~~~~~~~l~~L~~L~L~~~~~ 981 (1141)
.+...+.|++|+|++| .+... +...+...++|++|+|++|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 4555667777777776 44321 122334445555555555543
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.61 E-value=0.00043 Score=74.83 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=96.3
Q ss_pred CccccchHHHHHHHHHHHhCC-----CCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 161 SEVVGREEDKEAMIDLLASNG-----ASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~-----~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
.+++|.+..++.+.+.+.... ..+.....+.+.|+|++|+||||+|+.+++.. ...| +.+..+.-
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~~---~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SATF---LNISAASLTSKYV 95 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCEE---EEEESTTTSSSSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe---EEeeHHHHhhccc
Confidence 468999999999888764310 00001123578999999999999999998732 2222 23333221
Q ss_pred --hhH----HHHHHhcCcceeeeecCCCCCC-----------hHHHHHHHHhc---cCC--CCCcEEEEEcCch-----H
Q 001145 231 --FNS----QLRRLLRGRRYLLVLDDVWNED-----------HEEWDKLRVSL---SDG--AEGSRVIVTTRSA-----K 283 (1141)
Q Consensus 231 --~~~----~l~~~l~~k~~LlvlDdvw~~~-----------~~~~~~l~~~l---~~~--~~gs~ilvTtr~~-----~ 283 (1141)
... .+......++.+|++|++..-. ......+...+ +.. ..+..||.||... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~ 175 (297)
T 3b9p_A 96 GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA 175 (297)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHH
T ss_pred chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHH
Confidence 111 2222334567899999983210 11112222222 211 1234566666643 2
Q ss_pred HHHhhCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHh
Q 001145 284 VATIVGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALG 344 (1141)
Q Consensus 284 v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 344 (1141)
+... ....+.+...+.++...++...+-.... .-.......+++.+.|.+- ++..+.
T Consensus 176 l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 176 ALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2222 2235777888888888888776522111 1122356778888888775 454443
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=3.3e-05 Score=76.62 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=78.5
Q ss_pred hhhhcCCCCcEEeccccCC-CCCCC----CccccCCCCcccEEEccCCCCcc-----ccccccccccCceEecCCCcccc
Q 001145 509 ESLYEAKKLRTLNLLFSKG-DLGEA----PPKLFSSFRYLRTLNLSGSGIKK-----LHSSISCLISLRYLNMSNTLIER 578 (1141)
Q Consensus 509 ~~~~~~~~Lr~L~l~~~~~-~~~~~----~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~~ 578 (1141)
..+...+.|++|++ +.+ .+... +...+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L--~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNL--NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEEC--TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEe--cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 45566788888887 444 44321 23446777889999999988864 44556667789999999888774
Q ss_pred -----cchhhhcCCCCcEEec--CCCCCCcc----cCccccCCCCCcEEEecCc
Q 001145 579 -----LPESICDLVYLQVLNL--SDCHDLIE----LPKRLASIFQLRHLMIYGC 621 (1141)
Q Consensus 579 -----lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~i~~L~~L~~L~l~~~ 621 (1141)
+...+...++|++|+| ++|..... +...+...++|++|++++|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 5677778888999999 66663322 4445566688888888877
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.58 E-value=4.7e-05 Score=75.31 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-----------H
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS-----------Q 234 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-----------~ 234 (1141)
.++.++.+.+++..-. ...-..+.|+|++|+||||||+.+++.......+ .++++.+.+-... .
T Consensus 19 ~~~~~~~~~~~~~~~~----~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN----PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFDTKDLIFRLKHLMDEGKDTK 93 (180)
T ss_dssp HHHHHHHHHHHHHSCC----GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEEHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHHhcc----ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEEHHHHHHHHHHHhcCchHHH
Confidence 4445555555554321 1123589999999999999999998743211121 2344544332211 1
Q ss_pred HHHHhcCcceeeeecCCCCCChHHHH--HHHHhccCC-CCCcEEEEEcCc
Q 001145 235 LRRLLRGRRYLLVLDDVWNEDHEEWD--KLRVSLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 235 l~~~l~~k~~LlvlDdvw~~~~~~~~--~l~~~l~~~-~~gs~ilvTtr~ 281 (1141)
+.+.+ .+.-++||||++....+.|. .+...+... ..|..+|+||..
T Consensus 94 ~~~~~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 94 FLKTV-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHH-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHh-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11112 24568999999743323333 333333221 256788888864
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.57 E-value=0.00055 Score=73.84 Aligned_cols=171 Identities=14% Similarity=0.075 Sum_probs=94.2
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---- 230 (1141)
.+++|.+..++++.+.+...-. ...-...+.|.|+|++|+|||+||+.+++.. ...| +.+..++-
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~~---i~v~~~~l~~~~ 89 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF---ISIKGPELLTMW 89 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCEE---EEECHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCCE---EEEEhHHHHhhh
Confidence 4689999888888877643100 0000123578999999999999999999732 2222 22221111
Q ss_pred -------hhHHHHHHhcCcceeeeecCCCCCC--------------hHHHHHHHHhccC--CCCCcEEEEEcCchH-HHH
Q 001145 231 -------FNSQLRRLLRGRRYLLVLDDVWNED--------------HEEWDKLRVSLSD--GAEGSRVIVTTRSAK-VAT 286 (1141)
Q Consensus 231 -------~~~~l~~~l~~k~~LlvlDdvw~~~--------------~~~~~~l~~~l~~--~~~gs~ilvTtr~~~-v~~ 286 (1141)
....+.......+.++++|++..-. ......+...+.. ...+..||.||.... +..
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCG
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccCh
Confidence 0112233334567899999984200 0112344444432 223556777776542 222
Q ss_pred h-hC---CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhH
Q 001145 287 I-VG---TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLA 339 (1141)
Q Consensus 287 ~-~~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 339 (1141)
. .. -...+.+...+.++..+++....-.... ... .-...+++.+.|.|-+
T Consensus 170 al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~--~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKD--VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSS--CCHHHHHHTCSSCCHH
T ss_pred HHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Ccc--chHHHHHHHcCCCCHH
Confidence 2 22 2236889999999988888776532211 111 1134566667776543
No 208
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.52 E-value=0.0011 Score=75.49 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=97.7
Q ss_pred CccccchHHHHHHHHHHHhC----C-CCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccce-------EEEEEeC
Q 001145 161 SEVVGREEDKEAMIDLLASN----G-ASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFEL-------KIWVCVN 228 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~----~-~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-------~~wv~~~ 228 (1141)
.+++|.+..++.|.+.+... . ..+.....+.|.|+|++|+|||+||+++++... ...|-. ..|+..+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~~~~~v~~~~l~~~~~g~~ 212 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDLVSKWLGES 212 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SSEEEEECCC---------C
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CCCEEEEeHHHHHhhhcchH
Confidence 56899999998888776311 0 000012346789999999999999999997321 111100 0111111
Q ss_pred cchhH-HHHHHhcCcceeeeecCCCCCC-----------hHHHHHHHHhccC---CCCCcEEEEEcCchH-HHHh-h-CC
Q 001145 229 EDFNS-QLRRLLRGRRYLLVLDDVWNED-----------HEEWDKLRVSLSD---GAEGSRVIVTTRSAK-VATI-V-GT 290 (1141)
Q Consensus 229 ~~~~~-~l~~~l~~k~~LlvlDdvw~~~-----------~~~~~~l~~~l~~---~~~gs~ilvTtr~~~-v~~~-~-~~ 290 (1141)
..... .+...-..++.+|++|++..-. ......+...+.. ...+..||.||.... +... . ..
T Consensus 213 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf 292 (444)
T 2zan_A 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 292 (444)
T ss_dssp CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhc
Confidence 11111 2222334667899999995320 0112233333322 134566666765432 2111 1 22
Q ss_pred CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCc-hhHHHHHh
Q 001145 291 IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGI-PLAAKALG 344 (1141)
Q Consensus 291 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 344 (1141)
...+.+...+.++...+|..++...... ........|++.+.|. +-.|..+.
T Consensus 293 ~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 293 EKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2367788888888888988876322111 1123457888888884 44444443
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.00047 Score=73.89 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc-cc-cccceEEEEEeCc-chhH-HHHH---H
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK-VT-KSFELKIWVCVNE-DFNS-QLRR---L 238 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~~~-~~~~-~l~~---~ 238 (1141)
-++.++.+...+... +.....++|++|+||||+|+.+.+... .. .+.+ ..++..+. .... .+++ .
T Consensus 2 ~~~~~~~L~~~i~~~-------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~ir~li~~ 73 (305)
T 2gno_A 2 AKDQLETLKRIIEKS-------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIRTIKDF 73 (305)
T ss_dssp --CHHHHHHHHHHTC-------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCC-------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHHHHHHHH
Confidence 345566666666654 256889999999999999999976311 11 2333 34555442 2221 2222 2
Q ss_pred h-----cCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc-hHHHHhhCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 239 L-----RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS-AKVATIVGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 239 l-----~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
. .+++-++|+|++..-.....+.+...+....+.+.+|++|.. ..+...+... .+++.++++++..+.+.+.+
T Consensus 74 ~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 74 LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred HhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 2 345679999999776777788888888776667777776644 3444444444 89999999999999888765
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.51 E-value=0.00046 Score=79.19 Aligned_cols=175 Identities=10% Similarity=0.026 Sum_probs=98.7
Q ss_pred CccccchHHHHHHHHHHHhCCCC------CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS------GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---- 230 (1141)
..++|.+..+++|.+++...-.. -.....+-|.|+|++|+|||++|+++++. ....| +.+..+.-
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~l~~~~ 278 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKL 278 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchHhhhhh
Confidence 35899999999988776531000 00012346889999999999999999873 22222 23332211
Q ss_pred -------hhHHHHHHhcCcceeeeecCCCC--------CC---hHHHHHHHHhccC--CCCCcEEEEEcCchH-HHHhh-
Q 001145 231 -------FNSQLRRLLRGRRYLLVLDDVWN--------ED---HEEWDKLRVSLSD--GAEGSRVIVTTRSAK-VATIV- 288 (1141)
Q Consensus 231 -------~~~~l~~~l~~k~~LlvlDdvw~--------~~---~~~~~~l~~~l~~--~~~gs~ilvTtr~~~-v~~~~- 288 (1141)
....+.....+++.+|+||++.. .. ......+...+.. ...+..||.||.... +...+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 11134444466778999999821 01 1222334444432 223455666665442 22222
Q ss_pred ---CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCc-hhHHHHH
Q 001145 289 ---GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGI-PLAAKAL 343 (1141)
Q Consensus 289 ---~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 343 (1141)
.....+.+...+.++..+++..++-..... ......++++.+.|. +-.+..+
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~---~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLA---DDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC---TTCCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc---chhhHHHHHHHccCCcHHHHHHH
Confidence 122368899999999999998876321111 111246677777774 4444444
No 211
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.51 E-value=0.00042 Score=74.64 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=69.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc-ccccccceEEEEEeCcchhHHHHHHh
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE-KVTKSFELKIWVCVNEDFNSQLRRLL 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~l~~~l 239 (1141)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.. +....| +.+..+.-....+...+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~~~l~~~~l 73 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----SDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALNESLLESEL 73 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCCHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCChHHHHHHh
Confidence 4589999999999888776411 12357799999999999999998732 111222 23333322222222111
Q ss_pred --------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 240 --------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 240 --------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
....-.++||++..-.......+...+.... ...+||.||..
T Consensus 74 fg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 74 FGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred cCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 0123478999997666666667776665432 34678887765
No 212
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.51 E-value=5.3e-05 Score=76.61 Aligned_cols=108 Identities=21% Similarity=0.197 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhH-----------HHH
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNS-----------QLR 236 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-----------~l~ 236 (1141)
..++.+.+++...... .....+.|+|++|+||||||+.+++.. ......++++.++.-... .+.
T Consensus 36 ~~~~~~~~~~~~~~~~---~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (202)
T 2w58_A 36 KAIRFAERFVAEYEPG---KKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVPELFRELKHSLQDQTMNEKL 110 (202)
T ss_dssp HHHHHHHHHHHHCCSS---CCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHHHHHHHHHHC---CCCHHHH
T ss_pred HHHHHHHHHHHHhhhc---cCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhHHHHHHHHHHhccchHHHHH
Confidence 4455566666544111 112578899999999999999999732 222334566665432211 111
Q ss_pred HHhcCcceeeeecCCCCCChHHHHH--HHH-hccCC-CCCcEEEEEcCc
Q 001145 237 RLLRGRRYLLVLDDVWNEDHEEWDK--LRV-SLSDG-AEGSRVIVTTRS 281 (1141)
Q Consensus 237 ~~l~~k~~LlvlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtr~ 281 (1141)
+.+. +.-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 111 ~~~~-~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 111 DYIK-KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHH-HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHhc-CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 2222 23489999996533322221 211 12111 234568888764
No 213
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.50 E-value=0.0005 Score=77.32 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=96.3
Q ss_pred CccccchHHHHHHHHHHHhCC---C--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc------
Q 001145 161 SEVVGREEDKEAMIDLLASNG---A--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE------ 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~---~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~------ 229 (1141)
.+++|.+..++.|.+.+.... . .......+-|.|+|++|+|||++|+.+++. ....| +.+..+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhcccc
Confidence 579999999999988773210 0 000112357899999999999999999873 22222 2222221
Q ss_pred -chhHHHH----HHhcCcceeeeecCCCCC-----------ChHHHHHHHHhccC----CCCCcEEEEEcCch-HHHHh-
Q 001145 230 -DFNSQLR----RLLRGRRYLLVLDDVWNE-----------DHEEWDKLRVSLSD----GAEGSRVIVTTRSA-KVATI- 287 (1141)
Q Consensus 230 -~~~~~l~----~~l~~k~~LlvlDdvw~~-----------~~~~~~~l~~~l~~----~~~gs~ilvTtr~~-~v~~~- 287 (1141)
.....+. ..-..+..+|+||++..- .......+...+.. ......||.||... .+...
T Consensus 190 g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 269 (389)
T 3vfd_A 190 GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAV 269 (389)
T ss_dssp --CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHH
Confidence 1111222 222455679999999421 01111223222221 12234555566542 22111
Q ss_pred hC-CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh-HHHHHh
Q 001145 288 VG-TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL-AAKALG 344 (1141)
Q Consensus 288 ~~-~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 344 (1141)
.. ....+.+...+.++..+++...+-.... .-.......+++.+.|..- ++..+.
T Consensus 270 ~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 270 LRRFIKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HcCcceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12 2235788999999999999877632211 1123456788888888554 554443
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=2.1e-05 Score=81.88 Aligned_cols=105 Identities=23% Similarity=0.195 Sum_probs=74.6
Q ss_pred cCCCCcccE--EEccCCCCcccccc----ccccccCceEecCCCcccccc---hhhhcCCCCcEEecCCCCCCcccCccc
Q 001145 537 FSSFRYLRT--LNLSGSGIKKLHSS----ISCLISLRYLNMSNTLIERLP---ESICDLVYLQVLNLSDCHDLIELPKRL 607 (1141)
Q Consensus 537 ~~~l~~Lr~--L~L~~~~l~~lp~~----i~~L~~L~~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~i 607 (1141)
|...+.|+. ++++.|....++.. ..++++|++|+|++|.|..++ ..+..+++|++|+|++|. +..+ ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhh
Confidence 333444554 56666655554432 257899999999999988654 677899999999999987 4444 335
Q ss_pred cCCC--CCcEEEecCcccccccC-------cccCCCCCCCccCce
Q 001145 608 ASIF--QLRHLMIYGCCRLSQFP-------DHIGRLIQLQTLPVF 643 (1141)
Q Consensus 608 ~~L~--~L~~L~l~~~~~~~~~p-------~~i~~l~~L~~L~~~ 643 (1141)
..+. +|++|+|.+|.....+| ..+..+++|+.|+..
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 5555 99999999996544444 235678888888654
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.45 E-value=0.00034 Score=80.47 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=77.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc---ccccc-ce-EEEEEeC----cch
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK---VTKSF-EL-KIWVCVN----EDF 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~~~f-~~-~~wv~~~----~~~ 231 (1141)
+.+|||+.+++.+++.+... ...-+.|+|++|+|||++|+.++.... +.... +. .+.+..+ ..+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~-------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~ 252 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR-------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEF 252 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCcHHHHHHHHHHHhcc-------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchH
Confidence 45999999999999998754 123467999999999999999986310 00000 10 1112211 111
Q ss_pred ----hHHHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHh-------hCCCCceeCCCCC
Q 001145 232 ----NSQLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATI-------VGTIPPYYLKGLS 300 (1141)
Q Consensus 232 ----~~~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~-------~~~~~~~~l~~l~ 300 (1141)
...+...-..++.++++|.- .+....+...+.. ...++|.+|........ ...-..+.+...+
T Consensus 253 e~~~~~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~ 326 (468)
T 3pxg_A 253 EDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (468)
T ss_dssp CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCC
Confidence 12333344567889999921 1222334333332 23456666554431111 1112268899999
Q ss_pred HHHHHHHHhhcc
Q 001145 301 HDDCWTLFKQRA 312 (1141)
Q Consensus 301 ~~~~~~lf~~~~ 312 (1141)
.++..+++...+
T Consensus 327 ~e~~~~iL~~~~ 338 (468)
T 3pxg_A 327 VDESIQILQGLR 338 (468)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.45 E-value=0.00053 Score=74.70 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=83.0
Q ss_pred CccccchHHHHHHHHHHHhCCC-CC------CCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGA-SG------FGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE---- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~-~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---- 229 (1141)
..++|.++.++.+...+...-. .. .+.....+.++|++|+|||++|+.+.+.. ... .+.+..+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l--~~~---~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--NAP---FIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEcchhcccC
Confidence 4689999999999887764100 00 00123467899999999999999998732 111 22333322
Q ss_pred -----chhHHHHHHhc---------CcceeeeecCCCCCChHH------------HHHHHHhccCC----------CCCc
Q 001145 230 -----DFNSQLRRLLR---------GRRYLLVLDDVWNEDHEE------------WDKLRVSLSDG----------AEGS 273 (1141)
Q Consensus 230 -----~~~~~l~~~l~---------~k~~LlvlDdvw~~~~~~------------~~~l~~~l~~~----------~~gs 273 (1141)
+....+.+... +++.++++|++..-.... +..+...+... ..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 169 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTC
T ss_pred CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcE
Confidence 11122333322 246799999995422211 44555544432 1245
Q ss_pred EEEEEcC----c-----hHHHHhhCCCCceeCCCCCHHHHHHHHhhc
Q 001145 274 RVIVTTR----S-----AKVATIVGTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 274 ~ilvTtr----~-----~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
.+|.|+. . ..+...+ ...+.+.+++.++..+++.++
T Consensus 170 ~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 170 LFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHSS
T ss_pred EEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHhh
Confidence 5666641 1 1222222 236899999999999998864
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.40 E-value=0.00044 Score=75.31 Aligned_cols=119 Identities=24% Similarity=0.306 Sum_probs=70.5
Q ss_pred CccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh------
Q 001145 161 SEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN------ 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~------ 232 (1141)
..++|.+..++.+...+..... .........+.++|++|+||||+|+.+++.. ...-...+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccccHHH
Confidence 3578999888888877765310 0111234589999999999999999998732 11111123343322110
Q ss_pred --------------HHHHHHhc-CcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 233 --------------SQLRRLLR-GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 233 --------------~~l~~~l~-~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
..+.+.+. ...-++++|++..-....+..+...+..+. ..+.+|.||..
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 12333332 334699999997666666777766664322 23447777765
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=9.3e-05 Score=70.01 Aligned_cols=85 Identities=16% Similarity=0.037 Sum_probs=49.9
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCC-
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDG- 269 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~- 269 (1141)
.++|+|+.|+|||||++.++...... .+ ..+++...+-... .+..+.-++|+||+........+.+...+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~----~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~ 111 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT----DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFR 111 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC----GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH----HHHhCCCEEEEeCccccChHHHHHHHHHHHHHH
Confidence 78999999999999999998743221 11 2556654432211 22335678899998654333333333333211
Q ss_pred CCCc-EEEEEcCc
Q 001145 270 AEGS-RVIVTTRS 281 (1141)
Q Consensus 270 ~~gs-~ilvTtr~ 281 (1141)
..|. +||+||+.
T Consensus 112 ~~g~~~iiits~~ 124 (149)
T 2kjq_A 112 NSGKGFLLLGSEY 124 (149)
T ss_dssp HHTCCEEEEEESS
T ss_pred HcCCcEEEEECCC
Confidence 1233 48888874
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.34 E-value=0.00046 Score=86.12 Aligned_cols=142 Identities=16% Similarity=0.284 Sum_probs=79.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCccc---cccc-c-eEEEEEeCc------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKV---TKSF-E-LKIWVCVNE------ 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~~f-~-~~~wv~~~~------ 229 (1141)
+.++||+++++++++.+... ....+.++|.+|+||||+|+.+++.... .... . ..+++..+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~-------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~ 242 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR-------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK 242 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS-------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred cccCCcHHHHHHHHHHHhcC-------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc
Confidence 45899999999999998754 2234689999999999999999873210 0000 1 122332221
Q ss_pred ---chhHHHHHHh----c-CcceeeeecCCCCCC--------hHHHHHHHHhccCCCCCcEEEEEcCchHHHH-----h-
Q 001145 230 ---DFNSQLRRLL----R-GRRYLLVLDDVWNED--------HEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT-----I- 287 (1141)
Q Consensus 230 ---~~~~~l~~~l----~-~k~~LlvlDdvw~~~--------~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~-----~- 287 (1141)
.+...++..+ . +++.++++|++..-. ......+...+..+ +..+|.+|....... .
T Consensus 243 ~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~~~~~~~~~~d~aL 320 (854)
T 1qvr_A 243 YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATTLDEYREIEKDPAL 320 (854)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEECHHHHHHHTTCTTT
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecCchHHhhhccCHHH
Confidence 1222333332 2 367899999995321 11112244444332 234555554433211 1
Q ss_pred hCCCCceeCCCCCHHHHHHHHhhc
Q 001145 288 VGTIPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 288 ~~~~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
...-..+.+.+++.++..+++...
T Consensus 321 ~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 321 ERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HhCCceEEeCCCCHHHHHHHHHhh
Confidence 112235889999999999988753
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.32 E-value=0.0006 Score=74.76 Aligned_cols=173 Identities=19% Similarity=0.182 Sum_probs=95.6
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch--hHHHHHH
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--NSQLRRL 238 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~l~~~ 238 (1141)
..++|.+..++.+...+.... ..+.....+.++|++|+||||||+.+++.. ...|. ... .+.. ...+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~--~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~---~~s-g~~~~~~~~l~~~ 96 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAK--MRGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH---VTS-GPVLVKQGDMAAI 96 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHH--HHTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE---EEE-TTTCCSHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHH--hcCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE---EEe-chHhcCHHHHHHH
Confidence 357888877777766554320 001133578999999999999999998732 11221 111 1110 1122222
Q ss_pred h--cCcceeeeecCCCCCChHHHHHHHHhccCCC------------------CCcEEE-EEcCchHHHHhhCC--CCcee
Q 001145 239 L--RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA------------------EGSRVI-VTTRSAKVATIVGT--IPPYY 295 (1141)
Q Consensus 239 l--~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~il-vTtr~~~v~~~~~~--~~~~~ 295 (1141)
+ ..++.++++|++..-.....+.+...+.... +...++ .|++...+...+.. .....
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~ 176 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILE 176 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEE
T ss_pred HHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceee
Confidence 2 1345677889885444434444443332211 011222 34444333222211 12578
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchhHHHHH
Q 001145 296 LKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPLAAKAL 343 (1141)
Q Consensus 296 l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 343 (1141)
+++.+.++-.+++.+.+-... .....+.+..|+++++|.|-.+..+
T Consensus 177 Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 177 LDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 999999999999988753211 1223456889999999999755433
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.25 E-value=0.0031 Score=66.25 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=89.9
Q ss_pred CccccchHHHHHHHHHHH---hCCC-C-CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 161 SEVVGREEDKEAMIDLLA---SNGA-S-GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~---~~~~-~-~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
.+++|.+..++++.+.+. .... . .+....+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~~~~ 86 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVEMFV 86 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTTSCC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHHHhh
Confidence 468999888777765432 2100 0 001123358899999999999999998732 2222 23322210
Q ss_pred ------hhHHHHHHhcCcceeeeecCCCCC------------C--hHHHHHHHHhccC--CCCCcEEEEEcCchH-HHHh
Q 001145 231 ------FNSQLRRLLRGRRYLLVLDDVWNE------------D--HEEWDKLRVSLSD--GAEGSRVIVTTRSAK-VATI 287 (1141)
Q Consensus 231 ------~~~~l~~~l~~k~~LlvlDdvw~~------------~--~~~~~~l~~~l~~--~~~gs~ilvTtr~~~-v~~~ 287 (1141)
....+.........++++|++..- . ......+...+.. ...+..||.||.... +...
T Consensus 87 ~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~ 166 (257)
T 1lv7_A 87 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 166 (257)
T ss_dssp CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGG
T ss_pred hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHH
Confidence 111233333455679999998210 0 0122233333322 223456666775543 2222
Q ss_pred h-C---CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCC-chhHHH
Q 001145 288 V-G---TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGG-IPLAAK 341 (1141)
Q Consensus 288 ~-~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~ 341 (1141)
. . -...+.+...+.++..+++..+.-. ....++ .....++....| .+--+.
T Consensus 167 l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~-~~l~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 167 LLRPGRFDRQVVVGLPDVRGREQILKVHMRR-VPLAPD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-SCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred HcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc-CCCCcc--ccHHHHHHHcCCCCHHHHH
Confidence 2 1 1236778888888888888766422 111111 123556777777 554444
No 222
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0027 Score=69.48 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHHHh----CC-C-CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch---
Q 001145 161 SEVVGREEDKEAMIDLLAS----NG-A-SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~----~~-~-~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--- 231 (1141)
.++.|.++.+++|.+.+.- ++ . ..+-..++-|.++|++|.|||.||+++++. ....| +.+..++-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~sk~ 222 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQKY 222 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhccc
Confidence 4688998888887665432 10 0 001123467889999999999999999983 22232 333333211
Q ss_pred ----hHHHHHH----hcCcceeeeecCCCCC--------Ch------HHHHHHHHhccC--CCCCcEEEEEcCch-HHHH
Q 001145 232 ----NSQLRRL----LRGRRYLLVLDDVWNE--------DH------EEWDKLRVSLSD--GAEGSRVIVTTRSA-KVAT 286 (1141)
Q Consensus 232 ----~~~l~~~----l~~k~~LlvlDdvw~~--------~~------~~~~~l~~~l~~--~~~gs~ilvTtr~~-~v~~ 286 (1141)
...+++. -...+++|++|++..- .. .....+...+.. ...+..||.||... .+-.
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDp 302 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCH
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCH
Confidence 1233333 3567899999998431 00 012223333332 23444566666543 2222
Q ss_pred hh----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+ .-...+.+..-+.++..++|+.+.-. ....++. -..++++.+.|.-
T Consensus 303 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSC--CHHHHHHHCCSCC
T ss_pred hHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccC--CHHHHHHHCCCCC
Confidence 21 33457889999999999999876522 1111111 1467788887754
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.15 E-value=0.0012 Score=81.52 Aligned_cols=144 Identities=20% Similarity=0.270 Sum_probs=83.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcc---cc-cccceEEEEE-e--------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEK---VT-KSFELKIWVC-V-------- 227 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~-~~f~~~~wv~-~-------- 227 (1141)
+.++||+.+++++++.|... ...-+.|+|.+|+||||+|+.+++... +. ......+|.. .
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~ 258 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK 258 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCC
T ss_pred CCccCCHHHHHHHHHHHhcc-------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccc
Confidence 46899999999999988754 223568999999999999999986321 00 0122233321 1
Q ss_pred -CcchhHHHHHHh----cCcceeeeecCCCCC--------ChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhhC-----
Q 001145 228 -NEDFNSQLRRLL----RGRRYLLVLDDVWNE--------DHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIVG----- 289 (1141)
Q Consensus 228 -~~~~~~~l~~~l----~~k~~LlvlDdvw~~--------~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~~----- 289 (1141)
...+...++..+ ..++.++++|++..- ...+...+...+.. ..+..+|.+|..........
T Consensus 259 ~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL 337 (758)
T 1r6b_X 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_dssp CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSS
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHH
Confidence 122333333333 345789999999532 12222222222222 23456666666544321111
Q ss_pred --CCCceeCCCCCHHHHHHHHhhcc
Q 001145 290 --TIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 290 --~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.-..+.+...+.++..+++....
T Consensus 338 ~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 338 ARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp GGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11257899999999888887643
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.13 E-value=0.0014 Score=80.81 Aligned_cols=149 Identities=21% Similarity=0.232 Sum_probs=88.0
Q ss_pred CccccchHHHHHHHHHHHhCCCC--CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh------
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS--GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN------ 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~--~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~------ 232 (1141)
..++|.+..++.+...+...... ........+.++|++|+|||++|+.+++.. ...-...+.+..+.-..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccccccc
Confidence 56899999999988888754211 111234478999999999999999998732 11112234444432211
Q ss_pred HHHHHHhc-CcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc-----hHH----HHh----
Q 001145 233 SQLRRLLR-GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS-----AKV----ATI---- 287 (1141)
Q Consensus 233 ~~l~~~l~-~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~-----~~v----~~~---- 287 (1141)
..+.+.++ ...-+++||++.......+..+...+..+. ...+||+||.. ..+ ...
T Consensus 569 ~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~ 648 (758)
T 3pxi_A 569 GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPE 648 (758)
T ss_dssp --CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHH
T ss_pred chhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHH
Confidence 12333332 334589999997766677777776665421 35688888872 111 111
Q ss_pred -hCC-CCceeCCCCCHHHHHHHHhhc
Q 001145 288 -VGT-IPPYYLKGLSHDDCWTLFKQR 311 (1141)
Q Consensus 288 -~~~-~~~~~l~~l~~~~~~~lf~~~ 311 (1141)
... ...+.+.++++++..+++...
T Consensus 649 l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 649 FINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp HHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred HHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 111 136778888888777766554
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.07 E-value=0.0013 Score=80.94 Aligned_cols=139 Identities=16% Similarity=0.238 Sum_probs=79.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc---ccccc-cceEE-EEEeC----c--
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE---KVTKS-FELKI-WVCVN----E-- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~---~~~~~-f~~~~-wv~~~----~-- 229 (1141)
+.+|||+++++++.+.|... ...-+.++|++|+|||++|+.+++.. .+... ....+ .+... .
T Consensus 180 d~iiG~~~~i~~l~~~l~~~-------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~ 252 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR-------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEF 252 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCchHHHHHHHHHHhCC-------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchH
Confidence 46999999999999998754 22347899999999999999998631 00000 01111 11111 1
Q ss_pred --chhHHHHHHhcCcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHHhh-------CCCCceeCCCCC
Q 001145 230 --DFNSQLRRLLRGRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVATIV-------GTIPPYYLKGLS 300 (1141)
Q Consensus 230 --~~~~~l~~~l~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~~~-------~~~~~~~l~~l~ 300 (1141)
.....+......++.++++|.- .+....+...+. ....++|.||......... ..-..+.+...+
T Consensus 253 e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~ 326 (758)
T 3pxi_A 253 EDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (758)
T ss_dssp CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCC
Confidence 1222344444577899999922 122223333333 2235666666544321111 111368899999
Q ss_pred HHHHHHHHhhcc
Q 001145 301 HDDCWTLFKQRA 312 (1141)
Q Consensus 301 ~~~~~~lf~~~~ 312 (1141)
.++..+++....
T Consensus 327 ~~~~~~il~~~~ 338 (758)
T 3pxi_A 327 VDESIQILQGLR 338 (758)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 226
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0017 Score=72.17 Aligned_cols=169 Identities=15% Similarity=0.086 Sum_probs=93.1
Q ss_pred CccccchHHHHHHHHHHHh----CCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch---
Q 001145 161 SEVVGREEDKEAMIDLLAS----NGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~----~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--- 231 (1141)
.++.|.++.+++|.+.+.- .+. .-+-..++-|.++|++|.|||+||+++++. ....| +.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~sk~ 283 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQKY 283 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCCCS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhccc
Confidence 3688999888888765421 100 001124567889999999999999999983 22222 233332211
Q ss_pred ----hHHHH----HHhcCcceeeeecCCCCC--------Ch------HHHHHHHHhccC--CCCCcEEEEEcCch-HHHH
Q 001145 232 ----NSQLR----RLLRGRRYLLVLDDVWNE--------DH------EEWDKLRVSLSD--GAEGSRVIVTTRSA-KVAT 286 (1141)
Q Consensus 232 ----~~~l~----~~l~~k~~LlvlDdvw~~--------~~------~~~~~l~~~l~~--~~~gs~ilvTtr~~-~v~~ 286 (1141)
...++ ..-...+++|++|++..- .. .....+...+.. ...+..||.||-.. .+-.
T Consensus 284 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDp 363 (467)
T 4b4t_H 284 VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDP 363 (467)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCH
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCCh
Confidence 11233 333567899999998421 00 011122333322 22344556666432 2222
Q ss_pred hh----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+ .-...+++...+.++..++|+.+.-.. ...... -...+++.+.|.-
T Consensus 364 ALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~-~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 364 ALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM-SVERGI--RWELISRLCPNST 415 (467)
T ss_dssp HHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS-CBCSSC--CHHHHHHHCCSCC
T ss_pred hhhccccccEEEEeCCcCHHHHHHHHHHHhcCC-CCCCCC--CHHHHHHHCCCCC
Confidence 21 234478888889999999998765321 111111 1366788887753
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0036 Score=69.74 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=88.8
Q ss_pred CccccchHHHHHHHHHHHhCC-----C-CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch---
Q 001145 161 SEVVGREEDKEAMIDLLASNG-----A-SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~-----~-~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--- 231 (1141)
.++.|.++.+++|.+.+.-.- . ..+-..++-|.++|++|.|||+||+++++. ....| +.+..++-.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~~~ 246 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVHKY 246 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhccc
Confidence 568899988888876554210 0 001124567899999999999999999983 22222 233333211
Q ss_pred ----hHHHHH----HhcCcceeeeecCCCC-----------CCh---HHHHHHHHhccC--CCCCcEEEEEcCchH-HHH
Q 001145 232 ----NSQLRR----LLRGRRYLLVLDDVWN-----------EDH---EEWDKLRVSLSD--GAEGSRVIVTTRSAK-VAT 286 (1141)
Q Consensus 232 ----~~~l~~----~l~~k~~LlvlDdvw~-----------~~~---~~~~~l~~~l~~--~~~gs~ilvTtr~~~-v~~ 286 (1141)
...+++ .-...++++++|++.. .+. .....+...+.. ...+..||.||.... +-.
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~ 326 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDP 326 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCH
T ss_pred cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcCh
Confidence 113333 3356789999999821 010 112233333321 234556666775432 222
Q ss_pred hh-CC---CCceeCCCCC-HHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV-GT---IPPYYLKGLS-HDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~-~~---~~~~~l~~l~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+ .. ...+++..++ .++...+|+.+.-+.. ..++. -...+++.+.|.-
T Consensus 327 AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 327 ALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp HHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTC--CHHHHHHHTTTCC
T ss_pred hhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCccc--CHHHHHHHCCCCC
Confidence 21 21 2356676564 4555566665542211 11111 1366777777753
No 228
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0051 Score=68.59 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=94.4
Q ss_pred CccccchHHHHHHHHHHHhC----C-C-CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh--
Q 001145 161 SEVVGREEDKEAMIDLLASN----G-A-SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-- 232 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~----~-~-~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-- 232 (1141)
.++.|.++.+++|.+.+.-. . . ..+-..++-|.++|++|.|||+||+++++. ....| +.+..+.-..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~sk~ 255 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVDKY 255 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCCSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcccc
Confidence 46889988888877655321 0 0 001224567899999999999999999983 22222 2333332111
Q ss_pred -----HHHH----HHhcCcceeeeecCCCCC-----------Ch---HHHHHHHHhccC--CCCCcEEEEEcCchHHH-H
Q 001145 233 -----SQLR----RLLRGRRYLLVLDDVWNE-----------DH---EEWDKLRVSLSD--GAEGSRVIVTTRSAKVA-T 286 (1141)
Q Consensus 233 -----~~l~----~~l~~k~~LlvlDdvw~~-----------~~---~~~~~l~~~l~~--~~~gs~ilvTtr~~~v~-~ 286 (1141)
..++ ..-...+++|++|++..- +. .....+...+.. ...+..||.||-..... .
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 1222 233567899999998421 11 112234443332 22455677777543322 2
Q ss_pred hh-CC---CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV-GT---IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~-~~---~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+ .. ...+++..-+.++..++|+.+.-.... .... -...+++.+.|.-
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCC--CHHHHHHTCCSCC
T ss_pred HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-Cccc--CHHHHHHhCCCCC
Confidence 22 11 235778888888888888776532211 1111 1367778887754
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.89 E-value=0.0052 Score=69.77 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=93.2
Q ss_pred CccccchHHHHHHHHHHHhCCCC-----CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS-----GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~-----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
.+++|.++.++++.+.+..-... -+..-.+-|.|+|++|+||||||+.+++.. ...| +.+..++-
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~~~ 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVELFV 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTCCT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHHHh
Confidence 46899988877776654321000 001112347899999999999999998732 2222 23333221
Q ss_pred ------hhHHHHHHhcCcceeeeecCCCCCCh--------------HHHHHHHHhccC--CCCCcEEEEEcCchHHHH-h
Q 001145 231 ------FNSQLRRLLRGRRYLLVLDDVWNEDH--------------EEWDKLRVSLSD--GAEGSRVIVTTRSAKVAT-I 287 (1141)
Q Consensus 231 ------~~~~l~~~l~~k~~LlvlDdvw~~~~--------------~~~~~l~~~l~~--~~~gs~ilvTtr~~~v~~-~ 287 (1141)
....+.......+.+|++|++..-.. .....+...+.. ...+..||.||....... .
T Consensus 91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~a 170 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPA 170 (476)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGG
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchh
Confidence 11134444556789999999843100 122333333321 124556777776553321 1
Q ss_pred -hC---CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 288 -VG---TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 288 -~~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.. -...+.+...+.++..+++..++-... ..+.. ....+++.+.|..
T Consensus 171 llR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC--CHHHHHHTCTTCC
T ss_pred hcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchh--hHHHHHHhcCCCc
Confidence 22 123678888888888888876653211 11111 1455888888876
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.80 E-value=0.0035 Score=71.93 Aligned_cols=95 Identities=17% Similarity=0.011 Sum_probs=60.0
Q ss_pred eeeeecCCCCCChHHHHHHHHhccCCCCCcEEE-EE---------cC----ch----HHHHhhCCCCceeCCCCCHHHHH
Q 001145 244 YLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVI-VT---------TR----SA----KVATIVGTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 244 ~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~il-vT---------tr----~~----~v~~~~~~~~~~~l~~l~~~~~~ 305 (1141)
-++++|++..-+...++.+...+...... .+| .| |. .. .+...+ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 38999999776777788888877655444 344 44 32 11 122222 34799999999999
Q ss_pred HHHhhcccCCCCCCcCcchhhHHHHhhc-CCchhHHHHHh
Q 001145 306 TLFKQRAFAPGEEYLNFLPVGKEIVKKC-GGIPLAAKALG 344 (1141)
Q Consensus 306 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~~~ 344 (1141)
+++.+.+-... ..-..+....|++.+ +|.|..+..+.
T Consensus 373 ~iL~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 373 QIIKIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 99987652111 111234567788887 78887555443
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.78 E-value=0.0015 Score=71.71 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=81.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-HHHHH--
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-SQLRR-- 237 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~l~~-- 237 (1141)
..++|+++.++.+...+... .-+.++|++|+|||+||+.+.+. ....|. .+....+.. ..+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~---------~~vll~G~pGtGKT~la~~la~~--~~~~~~---~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG---------GHILLEGVPGLAKTLSVNTLAKT--MDLDFH---RIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT---------CCEEEESCCCHHHHHHHHHHHHH--TTCCEE---EEECCTTCCHHHHHEEE
T ss_pred cceeCcHHHHHHHHHHHHcC---------CeEEEECCCCCcHHHHHHHHHHH--hCCCeE---EEecCCCCChhhcCCce
Confidence 35789999998888877754 15789999999999999999873 222221 122211110 00000
Q ss_pred ---------HhcCc---ceeeeecCCCCCChHHHHHHHHhccCC-----------CCCcEEEEEcCchH------HHHh-
Q 001145 238 ---------LLRGR---RYLLVLDDVWNEDHEEWDKLRVSLSDG-----------AEGSRVIVTTRSAK------VATI- 287 (1141)
Q Consensus 238 ---------~l~~k---~~LlvlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtr~~~------v~~~- 287 (1141)
..... ..++++|++..-.......+...+..+ .....|+.|+.... +...
T Consensus 93 ~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l 172 (331)
T 2r44_A 93 IYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQ 172 (331)
T ss_dssp EEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHH
T ss_pred eecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHH
Confidence 00111 258999999766666666665554422 23455665665321 1111
Q ss_pred hCCCC-ceeCCCCCHHHHHHHHhhcc
Q 001145 288 VGTIP-PYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 288 ~~~~~-~~~l~~l~~~~~~~lf~~~~ 312 (1141)
...-. .+.+...+.++-.+++.+.+
T Consensus 173 ~~Rf~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 173 VDRFMMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp HTTSSEEEECCCCCHHHHHHHHHHHH
T ss_pred HhheeEEEEcCCCCHHHHHHHHHhcc
Confidence 11112 47888889998888888765
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0035 Score=69.87 Aligned_cols=169 Identities=14% Similarity=0.090 Sum_probs=92.1
Q ss_pred CccccchHHHHHHHHHHHh----CCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLAS----NGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~----~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---- 230 (1141)
.++.|.++.+++|.+.+.- .+. ..+...++-|.++|++|.|||+||+++++. ....| +.+..+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~~~ 255 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQMY 255 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCSSC
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhhcc
Confidence 4688999888888765321 100 001224567899999999999999999983 22222 23333221
Q ss_pred ---hhHHHHHH----hcCcceeeeecCCCC-------CC---hHH----HHHHHHhccCC--CCCcEEEEEcCchH-HHH
Q 001145 231 ---FNSQLRRL----LRGRRYLLVLDDVWN-------ED---HEE----WDKLRVSLSDG--AEGSRVIVTTRSAK-VAT 286 (1141)
Q Consensus 231 ---~~~~l~~~----l~~k~~LlvlDdvw~-------~~---~~~----~~~l~~~l~~~--~~gs~ilvTtr~~~-v~~ 286 (1141)
....++.. -...+++|++|++.. .. ... ...+...+... ..+..||.||.... +-.
T Consensus 256 vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~ 335 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDP 335 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCH
Confidence 11123332 245689999999821 00 011 12233333322 23445666775433 222
Q ss_pred hh-C---CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV-G---TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~-~---~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+ . -...+++..-+.++..++|+.+.-... ..+.. -..++++.+.|.-
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dv--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 336 ALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDI--NWQELARSTDEFN 387 (434)
T ss_dssp TTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCC--CHHHHHHHCSSCC
T ss_pred hHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcC--CHHHHHHhCCCCC
Confidence 22 1 123678888888888888876642211 11111 1467788887753
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.68 E-value=0.00047 Score=73.21 Aligned_cols=147 Identities=13% Similarity=0.139 Sum_probs=77.5
Q ss_pred CccccchHHHHHHHHHHHhCCCCC-----CCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASG-----FGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN------- 228 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~-----~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~------- 228 (1141)
.+++|.+..++.+.+.+..-.... .....+-+.|+|++|+|||++|+.+++... ..|- .+..+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~---~v~~~~~~~~~~ 85 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--VPFF---SMGGSSFIEMFV 85 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--CCCC---CCCSCTTTTSCS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEE---EechHHHHHhhc
Confidence 468999888777776554100000 000122477999999999999999987321 1221 11111
Q ss_pred ----cchhHHHHHHhcCcceeeeecCCCCCChH---------------HHHHHHHhccCC---CCCcEEEEEcCchHH-H
Q 001145 229 ----EDFNSQLRRLLRGRRYLLVLDDVWNEDHE---------------EWDKLRVSLSDG---AEGSRVIVTTRSAKV-A 285 (1141)
Q Consensus 229 ----~~~~~~l~~~l~~k~~LlvlDdvw~~~~~---------------~~~~l~~~l~~~---~~gs~ilvTtr~~~v-~ 285 (1141)
......+......++.++++|++..-... ....+...+... .....||.||..... .
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld 165 (268)
T 2r62_A 86 GLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILD 165 (268)
T ss_dssp SSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSC
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcC
Confidence 01112344444456789999999431110 111222222211 122456667765432 1
Q ss_pred Hh-hC---CCCceeCCCCCHHHHHHHHhhcc
Q 001145 286 TI-VG---TIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 286 ~~-~~---~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.. .. ....+.+...+.++..+++...+
T Consensus 166 ~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 166 PALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp GGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred HhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 11 11 23467788888888888887665
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0035 Score=68.88 Aligned_cols=169 Identities=13% Similarity=0.091 Sum_probs=91.3
Q ss_pred CccccchHHHHHHHHHHHh---CCC---CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch---
Q 001145 161 SEVVGREEDKEAMIDLLAS---NGA---SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF--- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~---~~~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--- 231 (1141)
.++.|.++.+++|.+.+.- ... ..+-..++-|.++|++|.|||.||+++++. ....| +.+..++-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~sk~ 256 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQKY 256 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCCSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhhcc
Confidence 4688998888887765532 100 001123567899999999999999999983 22222 223322211
Q ss_pred ----hHHHHH----HhcCcceeeeecCCCCC-----------Ch---HHHHHHHHhcc--CCCCCcEEEEEcCchH-HHH
Q 001145 232 ----NSQLRR----LLRGRRYLLVLDDVWNE-----------DH---EEWDKLRVSLS--DGAEGSRVIVTTRSAK-VAT 286 (1141)
Q Consensus 232 ----~~~l~~----~l~~k~~LlvlDdvw~~-----------~~---~~~~~l~~~l~--~~~~gs~ilvTtr~~~-v~~ 286 (1141)
...++. .-...+++|++|++..- +. .....+...+. ....+..||.||-..+ +-.
T Consensus 257 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 112333 33566899999998421 00 11222333222 1223445666665433 222
Q ss_pred hhC-C---CCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IVG-T---IPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~~-~---~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.+- . ...+.+..-+.++..++|+.+.-. ....++. -...+++.+.|.-
T Consensus 337 ALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 337 ALIRPGRIDRKILFENPDLSTKKKILGIHTSK-MNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp TSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-SCBCSCC--CHHHHHHHCCSCC
T ss_pred HHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-CCCCCcC--CHHHHHHhCCCCC
Confidence 221 1 225778888888888888776522 1111111 1466777777653
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.61 E-value=0.0079 Score=72.47 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=94.3
Q ss_pred CccccchHHHHHHHHHHH----hCC--CCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-----
Q 001145 161 SEVVGREEDKEAMIDLLA----SNG--ASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE----- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~----~~~--~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----- 229 (1141)
.++.|.++.+++|.+.+. ... ..-+...++-|.++|++|+|||+||+++++.. ..+| +.+..++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~l~sk~ 278 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHHHHSSC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHHhhccc
Confidence 457888888877776643 211 01112346789999999999999999999843 2222 3333221
Q ss_pred --chhHHH----HHHhcCcceeeeecCCCCCC-----------hHHHHHHHHhccCC--CCCcEEEEEcCc-hHHHHhhC
Q 001145 230 --DFNSQL----RRLLRGRRYLLVLDDVWNED-----------HEEWDKLRVSLSDG--AEGSRVIVTTRS-AKVATIVG 289 (1141)
Q Consensus 230 --~~~~~l----~~~l~~k~~LlvlDdvw~~~-----------~~~~~~l~~~l~~~--~~gs~ilvTtr~-~~v~~~~~ 289 (1141)
.....+ ....+..+.+|++|++..-- ......+...+... ..+..||.||.. ..+-..+.
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALr 358 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHh
Confidence 111123 33345678999999983210 01112222222211 233445556544 33322222
Q ss_pred ----CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCchh
Q 001145 290 ----TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIPL 338 (1141)
Q Consensus 290 ----~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 338 (1141)
-...+++...+.++..++|+.+.-+. ....+ .-..++++++.|.--
T Consensus 359 R~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~-~~~~d--vdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNM-KLADD--VDLEQVANETHGHVG 408 (806)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHTCSSS-EECTT--CCHHHHHHHCCSCCH
T ss_pred CCcccceEEecCCCCHHHHHHHHHHHhcCC-CCCcc--cCHHHHHHhcCCCCH
Confidence 23368888899999999998765221 11111 124678888887643
No 236
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.56 E-value=0.006 Score=69.82 Aligned_cols=138 Identities=11% Similarity=0.172 Sum_probs=78.0
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-chhH------
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-DFNS------ 233 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~------ 233 (1141)
..++|+++.++.+...+... .-|.++|++|+|||+||+.+.+.......|. ++.+.- ....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~---------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~---~~~~~~~t~~dL~G~~~ 89 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG---------ESVFLLGPPGIAKSLIARRLKFAFQNARAFE---YLMTRFSTPEEVFGPLS 89 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT---------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEE---EECCTTCCHHHHHCCBC
T ss_pred hhhHHHHHHHHHHHHHHhcC---------CeeEeecCchHHHHHHHHHHHHHHhhhhHHH---HHHHhcCCHHHhcCccc
Confidence 35789999998888877754 2678999999999999999987432112221 111110 0000
Q ss_pred --HH--HHHh--cCc-----ceeeeecCCCCCChHHHHHHHHhccCCC---------CCc-EEEEEcCch--------HH
Q 001145 234 --QL--RRLL--RGR-----RYLLVLDDVWNEDHEEWDKLRVSLSDGA---------EGS-RVIVTTRSA--------KV 284 (1141)
Q Consensus 234 --~l--~~~l--~~k-----~~LlvlDdvw~~~~~~~~~l~~~l~~~~---------~gs-~ilvTtr~~--------~v 284 (1141)
.. ...+ ..+ .-++++|+++.........+...+..+. .+. -+|+||-.. ..
T Consensus 90 ~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aL 169 (500)
T 3nbx_X 90 IQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEAL 169 (500)
T ss_dssp ----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHH
T ss_pred HHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHH
Confidence 00 1111 112 2369999998766666666766664321 112 236666421 11
Q ss_pred HHhhCCCCceeCCCCCH-HHHHHHHhhcc
Q 001145 285 ATIVGTIPPYYLKGLSH-DDCWTLFKQRA 312 (1141)
Q Consensus 285 ~~~~~~~~~~~l~~l~~-~~~~~lf~~~~ 312 (1141)
.... ...+.+...++ ++..+++.+..
T Consensus 170 ldRF--~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 170 YDRM--LIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp HTTC--CEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHH--HHHHHHHHhhhhhhHHHHHhccc
Confidence 1111 22467788877 55567777654
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.001 Score=71.55 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN 228 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 228 (1141)
+....+.+.+++..... .....+.|+|++|+|||+||+++++.... ..-..++++.++
T Consensus 133 ~~~~~~~~~~~i~~~~~----~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS----AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSC----SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH
T ss_pred HHHHHHHHHHHHHhccc----cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH
Confidence 34445556666665311 01347889999999999999999873220 222235556554
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.43 E-value=0.0078 Score=74.98 Aligned_cols=119 Identities=24% Similarity=0.287 Sum_probs=70.8
Q ss_pred CccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch-------
Q 001145 161 SEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF------- 231 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------- 231 (1141)
..++|.+..++.+...+..... .........+.|+|++|+|||++|+.+.+...- ... ..+.+..+.-.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~-~~~-~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD-TEE-AMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS-SGG-GEEEECTTTCCSSGGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-CCC-cEEEEechhccchhHHHH
Confidence 3579999999998887764310 011123468899999999999999999863210 011 11222221100
Q ss_pred -------------hHHHHHHhc-CcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 232 -------------NSQLRRLLR-GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 232 -------------~~~l~~~l~-~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
...+.+.++ ...-+|+||++..-....+..+...+..+. .+..||+||..
T Consensus 636 l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp C--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 012333332 234589999997666677777777776542 24457777764
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.40 E-value=0.0072 Score=70.68 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=73.9
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceE----------------EE
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELK----------------IW 224 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~----------------~w 224 (1141)
.+++|.++....+.+.+.-...... .....+.++|++|+||||||+.++... ...|-.+ .|
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~-~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKS-LKGPILCLAGPPGVGKTSLAKSIAKSL--GRKFVRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSS-CCSCEEEEESSSSSSHHHHHHHHHHHH--TCEEEEECCCC--------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhccc-CCCCEEEEECCCCCCHHHHHHHHHHhc--CCCeEEEEecccchhhhhhhHHHHH
Confidence 4578888877777554432100000 123489999999999999999998632 1222111 01
Q ss_pred EEeCcchhHHHHHHh---cCcceeeeecCCCCCChH----HHHHHHHhccCCC---------------CCcEEEEEcCch
Q 001145 225 VCVNEDFNSQLRRLL---RGRRYLLVLDDVWNEDHE----EWDKLRVSLSDGA---------------EGSRVIVTTRSA 282 (1141)
Q Consensus 225 v~~~~~~~~~l~~~l---~~k~~LlvlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~ilvTtr~~ 282 (1141)
+..... .+.+.+ ....-++++|++..-... ....+...+.... ....||.||...
T Consensus 158 ig~~~~---~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 158 VGAMPG---RIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp ---------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST
T ss_pred hccCch---HHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc
Confidence 110000 111121 223448889998543322 1233333332111 234666666542
Q ss_pred -----HHHHhhCCCCceeCCCCCHHHHHHHHhhcc
Q 001145 283 -----KVATIVGTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 283 -----~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.+...+ ..+.+.+++.++-.+++.++.
T Consensus 235 ~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 235 ATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp TTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred ccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 223333 257888888888877776654
No 240
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.37 E-value=0.0055 Score=65.47 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=37.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-------chhHHHHHHh--------cCcceeeeecCCC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE-------DFNSQLRRLL--------RGRRYLLVLDDVW 252 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-------~~~~~l~~~l--------~~k~~LlvlDdvw 252 (1141)
.++.+.++|++|+|||+||+.+++.. ...| +.+..++ .....+++.+ +.++.+|++|++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l--~~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM--GINP---IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH--TCCC---EEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 45678899999999999999999732 2222 2233221 1111222222 4568999999993
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.37 E-value=0.018 Score=60.70 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=77.1
Q ss_pred CccccchHHHHHHHHHHHhCC-C------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc---
Q 001145 161 SEVVGREEDKEAMIDLLASNG-A------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED--- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~-~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--- 230 (1141)
.++.|.++.+++|.+.+...- . -+...... +.++|++|+||||||+.++..... ..+++...+-
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 356777777777665432110 0 00011112 899999999999999999873221 1344443221
Q ss_pred ----hhHHHHHHh----cCcceeeeecCCCCCC-----------hHHHHHHHHhccCCC--CCcEEEEEcCchHHHH-hh
Q 001145 231 ----FNSQLRRLL----RGRRYLLVLDDVWNED-----------HEEWDKLRVSLSDGA--EGSRVIVTTRSAKVAT-IV 288 (1141)
Q Consensus 231 ----~~~~l~~~l----~~k~~LlvlDdvw~~~-----------~~~~~~l~~~l~~~~--~gs~ilvTtr~~~v~~-~~ 288 (1141)
....+.... ...+.++++|++..-. ......+...+..+. ...-++.+|....+.. ..
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 111222222 3457899999984310 011223333343322 2344555565543322 11
Q ss_pred ----CCCCceeCCCCCHHHHHHHHhhcc
Q 001145 289 ----GTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 289 ----~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
.-...+.+...+.++..++|+...
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 223467888889998888888765
No 242
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.37 E-value=0.0012 Score=64.44 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..+.|+|++|+||||+|..+++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999888873
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.30 E-value=0.018 Score=71.00 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=70.7
Q ss_pred CccccchHHHHHHHHHHHhCCC--CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc--------
Q 001145 161 SEVVGREEDKEAMIDLLASNGA--SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED-------- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-------- 230 (1141)
..++|.+..++.+...+..... .........+.++|++|+|||++|+.+.+.. .. ..+.+..++-
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~~---~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--TC---EEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cC---CEEEEechhhcchhhHhh
Confidence 4588999999888877654310 0111234578999999999999999998732 11 1223332221
Q ss_pred -------hh-----HHHHHHhc-CcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 231 -------FN-----SQLRRLLR-GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 231 -------~~-----~~l~~~l~-~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
+. ..+.+.++ ....+++||++.......+..+...+..+. ....||.||..
T Consensus 533 l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp SCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred hcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 11 12334443 345789999997666666777776665321 23457777754
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.25 E-value=0.015 Score=64.93 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.18 E-value=0.026 Score=58.90 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=84.3
Q ss_pred CccccchHHHHHHHHHHHhCCCC------CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-----
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS------GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE----- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----- 229 (1141)
.+++|.+..+.++.+....-... +..-. +-+.|+|++|+||||||+.++.... . ..+.+...+
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~~~--~---~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFVEMF 89 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-SEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHHHHHHSC
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCCCCHHHHHHHHHHHhC--C---CEEEeeHHHHHHHH
Confidence 46888887666665443211000 00001 1289999999999999999987322 1 123333211
Q ss_pred --chhHHHHHHh----cCcceeeeecCCCCC----------ChHH----HHHHHHhccCCCC--CcEEEEEcCchHHHH-
Q 001145 230 --DFNSQLRRLL----RGRRYLLVLDDVWNE----------DHEE----WDKLRVSLSDGAE--GSRVIVTTRSAKVAT- 286 (1141)
Q Consensus 230 --~~~~~l~~~l----~~k~~LlvlDdvw~~----------~~~~----~~~l~~~l~~~~~--gs~ilvTtr~~~v~~- 286 (1141)
.....+...+ .....++++|++..- .... ...+...+..+.. ...++.||....+..
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~ 169 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 169 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCH
Confidence 0011222222 234579999998210 0011 1233333333222 233444555543322
Q ss_pred hh----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 IV----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
.. .....+.+...+.++..+++...+-+. ...+ ......+++.+.|.-
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~--~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAE--DVDLALLAKRTPGFV 221 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCT--TCCHHHHHHTCTTCC
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCc--ccCHHHHHHHcCCCC
Confidence 11 123367888888888888887665221 1111 112356777777753
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.08 E-value=0.039 Score=58.45 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=85.2
Q ss_pred CccccchHHHHHHHHHHHhCCCC------CCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGAS------GFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---- 230 (1141)
.+++|.++.++++.+....-... +..-. +-+.|+|++|+||||||+.++.... . ..+.+...+-
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~~--~---~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFVEMF 113 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-CEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHHHHHHST
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCcChHHHHHHHHHHHcC--C---CEEEecHHHHHHHH
Confidence 46889887776665543321000 00001 1289999999999999999987322 1 1233332110
Q ss_pred ---hhHHHHHHh----cCcceeeeecCCCCC----------ChHHH----HHHHHhccCCCC--CcEEEEEcCchHHH-H
Q 001145 231 ---FNSQLRRLL----RGRRYLLVLDDVWNE----------DHEEW----DKLRVSLSDGAE--GSRVIVTTRSAKVA-T 286 (1141)
Q Consensus 231 ---~~~~l~~~l----~~k~~LlvlDdvw~~----------~~~~~----~~l~~~l~~~~~--gs~ilvTtr~~~v~-~ 286 (1141)
....+...+ .....++++|++..- ....+ ..+...+..+.. ...++.||....+. .
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 011222222 234679999998210 01111 223333332222 22344455543322 1
Q ss_pred h----hCCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 287 I----VGTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 287 ~----~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
. ......+.+...+.++..+++..++-+ ....+ ......++..+.|..
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~~~~--~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAE--DVDLALLAKRTPGFV 245 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SCBCT--TCCHHHHHHTCTTCC
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-CCCCc--ccCHHHHHHHcCCCC
Confidence 1 123447889888998888888766522 11111 112345777777754
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.06 E-value=0.011 Score=72.78 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=90.6
Q ss_pred CccccchHHHHHHHHHHHhC----C-C-CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc-----
Q 001145 161 SEVVGREEDKEAMIDLLASN----G-A-SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE----- 229 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~----~-~-~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----- 229 (1141)
.+++|.+..+++|.+++... . . .-.-.....|.|+|++|+||||||+.++.. ....| +.+...+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~l~~~~ 278 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHHHSSSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchHhhhhh
Confidence 56899999988888877531 0 0 000123357899999999999999999873 22222 3333211
Q ss_pred --chhH----HHHHHhcCcceeeeecCCCCC--------C---hHHHHHHHHhccCC--CCCcEEEEEcCchH-HHHhhC
Q 001145 230 --DFNS----QLRRLLRGRRYLLVLDDVWNE--------D---HEEWDKLRVSLSDG--AEGSRVIVTTRSAK-VATIVG 289 (1141)
Q Consensus 230 --~~~~----~l~~~l~~k~~LlvlDdvw~~--------~---~~~~~~l~~~l~~~--~~gs~ilvTtr~~~-v~~~~~ 289 (1141)
.... .+.........++++|++..- . ......+...+... ..+..+|.||.... +...+.
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~ 358 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHh
Confidence 1111 233333456789999998321 0 01112233333221 23445666665532 222221
Q ss_pred ----CCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 290 ----TIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 290 ----~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
-...+.+...+.++..+++...+-...... .....+++..+.|..
T Consensus 359 r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~---~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHV 407 (806)
T ss_dssp STTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCT---TCCTHHHHHSCSSCC
T ss_pred cccccccccccCCCCHHHHHHHHHHHHhcCCCcc---cchhHHHHHhhcCcc
Confidence 122467888888988888887652211110 111345666666654
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.01 E-value=0.049 Score=62.17 Aligned_cols=169 Identities=16% Similarity=0.140 Sum_probs=91.0
Q ss_pred CccccchHHHHHHHHHHH---hCCC-CC-CCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc-----
Q 001145 161 SEVVGREEDKEAMIDLLA---SNGA-SG-FGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED----- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~---~~~~-~~-~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----- 230 (1141)
.+++|.++.+.++.+... .... .. +..-.+-|.|+|++|+||||||+.++... ... .+.+..++-
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~~---~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RVP---FITASGSDFVEMFV 105 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCC---EEEEEGGGGTSSCT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEehhHHHHhhh
Confidence 468999877776665433 2100 00 00112238999999999999999998732 222 233333221
Q ss_pred --hhHHHHHHhcC----cceeeeecCCCCC----------ChHHH----HHHHHhccCCC--CCcEEEEEcCchHHHH-h
Q 001145 231 --FNSQLRRLLRG----RRYLLVLDDVWNE----------DHEEW----DKLRVSLSDGA--EGSRVIVTTRSAKVAT-I 287 (1141)
Q Consensus 231 --~~~~l~~~l~~----k~~LlvlDdvw~~----------~~~~~----~~l~~~l~~~~--~gs~ilvTtr~~~v~~-~ 287 (1141)
....+...++. ...++++|++..- ....+ ..+...+..+. .+..++.||....+.. .
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 11234444433 2479999998321 01122 23333333222 3445555666554422 1
Q ss_pred h----CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhcCCch
Q 001145 288 V----GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKCGGIP 337 (1141)
Q Consensus 288 ~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 337 (1141)
+ .....+.+...+.++..+++..++-+. ...+ ......+++.+.|..
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~--dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAE--DVDLALLAKRTPGFV 236 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCC--SSTTHHHHTTSCSCC
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcC-CCCh--HHHHHHHHHhcCCCC
Confidence 1 123467888889998888887765221 1111 112456777887765
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.96 E-value=0.0027 Score=66.89 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=37.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEe--C-------cchhH---HHHHHhcCcceeeeecCCC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCV--N-------EDFNS---QLRRLLRGRRYLLVLDDVW 252 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~-------~~~~~---~l~~~l~~k~~LlvlDdvw 252 (1141)
+++.|+|++|+||||||.++... .-..++|++. . .+... .+.+.+...+ ++|+|++-
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLK 192 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccc
Confidence 57789999999999999999863 1112345555 1 11222 3445555555 99999984
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.92 E-value=0.056 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988753
No 251
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.90 E-value=0.012 Score=64.97 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=31.8
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|.+..++.+....... ...-|.|+|.+|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~-------~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP-------GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG-------GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC-------CCceEEEECCCCccHHHHHHHHHH
Confidence 35899988666554444322 112388999999999999999987
No 252
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.24 E-value=0.021 Score=55.87 Aligned_cols=85 Identities=19% Similarity=0.057 Sum_probs=46.3
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeC-----------------------cchhHHHHHHhcCcceeee
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVN-----------------------EDFNSQLRRLLRGRRYLLV 247 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-----------------------~~~~~~l~~~l~~k~~Llv 247 (1141)
++.|+|+.|+||||++..+..+...++ .. +..+... .+. ..+.+.+.++.-+++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~-v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~-~~~~~~~~~~~dvvi 81 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK-KK-VAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERP-EEMRKYIEEDTRGVF 81 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-CE-EEEEEEC-----CCCEECC----CEECEEESSG-GGGGGGCCTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Ce-EEEEeeccccccCcccEEecCCCceeeEEECCH-HHHHHHhcCCCCEEE
Confidence 788999999999999965554221111 11 1111111 001 012223334456999
Q ss_pred ecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc
Q 001145 248 LDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS 281 (1141)
Q Consensus 248 lDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~ 281 (1141)
+|.+..-+.. |......+.+. |..|++|.+.
T Consensus 82 IDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 82 IDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp ECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEES
T ss_pred EECcccCCHH-HHHHHHHHHHC--CCCEEEEeec
Confidence 9998654333 44444433332 6789998774
No 253
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.03 E-value=0.0074 Score=59.06 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=7.6
Q ss_pred cCCCCCCEEeEccC
Q 001145 942 QNLSLLESLEISEC 955 (1141)
Q Consensus 942 ~~l~~L~~L~Ls~~ 955 (1141)
.+-+.|++|+|++|
T Consensus 38 ~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 38 EDDTDLKEVNINNM 51 (197)
T ss_dssp TTCSSCCEEECTTC
T ss_pred hcCCCccEEECCCC
Confidence 34455666666554
No 254
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.97 E-value=0.052 Score=56.45 Aligned_cols=89 Identities=21% Similarity=0.220 Sum_probs=54.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEE----------------EE---e---CcchhHHHHHHhcCcceeee
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIW----------------VC---V---NEDFNSQLRRLLRGRRYLLV 247 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w----------------v~---~---~~~~~~~l~~~l~~k~~Llv 247 (1141)
.+++|+|+.|.|||||++.+..-... .+...++ +. + ...+...+.+.+..++=+++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 59999999999999999988652110 0011111 11 1 12455678888877888999
Q ss_pred ecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHH
Q 001145 248 LDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVA 285 (1141)
Q Consensus 248 lDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~ 285 (1141)
+|..- +......+.... ..|.-|++||....+.
T Consensus 104 lDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 104 VGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp ESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred eCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 99984 444433333322 2466688888765543
No 255
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.89 E-value=0.038 Score=50.39 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=39.4
Q ss_pred cEEEccCCCCc--cccccccccccCceEecCCCcccccchh-hhcCCCCcEEecCCCC
Q 001145 544 RTLNLSGSGIK--KLHSSISCLISLRYLNMSNTLIERLPES-ICDLVYLQVLNLSDCH 598 (1141)
Q Consensus 544 r~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 598 (1141)
.+++.++++++ .+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777788887 7776543 3688888888888888654 5677888888888775
No 256
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.74 E-value=0.019 Score=56.20 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=47.5
Q ss_pred hhhcCCCCccEEEEecCCCcc-----ccccccCCCCccCeeeccccccccc----ccccccCCCCCCEEeEccCCCCcc-
Q 001145 891 RLLENNPCLTSLTISSCPNLR-----SISSKLGCLVALKSLTIRWCQELIA----LPQEIQNLSLLESLEISECHSLTV- 960 (1141)
Q Consensus 891 ~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~Ls~~~~l~~- 960 (1141)
..+..-+.|++|+|+++..+. .+...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 345566778888887653332 2333345556677777777765432 222333445666666666665432
Q ss_pred ---ccccCCCCCCcCEEEEccC
Q 001145 961 ---LPEGIEGLTSLRSLSIENC 979 (1141)
Q Consensus 961 ---~~~~~~~l~~L~~L~L~~~ 979 (1141)
+-..+..-+.|+.|+|++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 1223444445666666543
No 257
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.73 E-value=0.046 Score=64.98 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=35.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++.-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC---------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888877776643 27899999999999999999873
No 258
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.70 E-value=0.092 Score=57.23 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=58.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccc--c---------ccc------eEEEEEeC---cchhHHHHHHhcCcceeeeec
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVT--K---------SFE------LKIWVCVN---EDFNSQLRRLLRGRRYLLVLD 249 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~--~---------~f~------~~~wv~~~---~~~~~~l~~~l~~k~~LlvlD 249 (1141)
.+++|+|+.|.||||+.+.+....... + .|. .+....+. ..+...+...|...+=++++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 499999999999999999885421000 0 000 01111221 234558999999999999999
Q ss_pred CCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHHH
Q 001145 250 DVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVAT 286 (1141)
Q Consensus 250 dvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~~ 286 (1141)
.+- +.+.++.+..... .|.-|++||.....+.
T Consensus 204 Ep~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 204 EMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred CCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 994 5556665444432 3556888887765543
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.68 E-value=0.035 Score=55.45 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
|++.++.+.+.+.... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~----~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK----TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC----CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667777888777531 12457999999999999999999875
No 260
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.34 E-value=0.041 Score=59.23 Aligned_cols=34 Identities=29% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++++.+..-+ .-..++|+|..|+|||||++.+.+
T Consensus 163 raID~~~pi~------rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPIG------RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCCB------TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeeec------CCcEEEEecCCCCChhHHHHHHHH
Confidence 4556665442 113789999999999999998876
No 261
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.31 E-value=0.2 Score=54.74 Aligned_cols=151 Identities=13% Similarity=-0.045 Sum_probs=95.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc--chhHHHHH----HhcCcceeeeecCCCC-CChHHHHH
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE--DFNSQLRR----LLRGRRYLLVLDDVWN-EDHEEWDK 261 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~l~~----~l~~k~~LlvlDdvw~-~~~~~~~~ 261 (1141)
.++..++|..|.||++.|+.+.+... ...|+....+.+.. +....+.. -+-+++-++|+|++.. -....++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~a 96 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQ 96 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHH
Confidence 34889999999999999988876321 12333211122222 22222211 1346777889999865 44567788
Q ss_pred HHHhccCCCCCcEEEEEcCc-------hHHHHhh-CCCCceeCCCCCHHHHHHHHhhcccCCCCCCcCcchhhHHHHhhc
Q 001145 262 LRVSLSDGAEGSRVIVTTRS-------AKVATIV-GTIPPYYLKGLSHDDCWTLFKQRAFAPGEEYLNFLPVGKEIVKKC 333 (1141)
Q Consensus 262 l~~~l~~~~~gs~ilvTtr~-------~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~ 333 (1141)
+...+....+++.+|++|.. ..+...+ .....++..+++.++......+.+-..+. .-..+.+..+++.+
T Consensus 97 Ll~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~ 174 (343)
T 1jr3_D 97 LLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL--ELDDAANQVLCYCY 174 (343)
T ss_dssp HHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTC--EECHHHHHHHHHSS
T ss_pred HHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHh
Confidence 88888766677777776642 2344443 23347889999999888777776522211 12234677899999
Q ss_pred CCchhHHHH
Q 001145 334 GGIPLAAKA 342 (1141)
Q Consensus 334 ~g~Plai~~ 342 (1141)
+|.+.++..
T Consensus 175 ~gdl~~~~~ 183 (343)
T 1jr3_D 175 EGNLLALAQ 183 (343)
T ss_dssp TTCHHHHHH
T ss_pred chHHHHHHH
Confidence 998887765
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.15 E-value=0.12 Score=56.81 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=54.6
Q ss_pred EEEEEEecCcchHHHHHHHHHcCccc--ccc---------c--c-eEEEEE---e---CcchhHHHHHHhcCcceeeeec
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKV--TKS---------F--E-LKIWVC---V---NEDFNSQLRRLLRGRRYLLVLD 249 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~--~~~---------f--~-~~~wv~---~---~~~~~~~l~~~l~~k~~LlvlD 249 (1141)
.+++|+|+.|.||||+++.+...... .+. + . ...++. + ...+...+...+...+-++++|
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illd 216 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 216 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEEC
Confidence 58999999999999999988652110 000 0 0 000111 1 1245668888888888899999
Q ss_pred CCCCCChHHHHHHHHhccCCCCCcEEEEEcCchHHH
Q 001145 250 DVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSAKVA 285 (1141)
Q Consensus 250 dvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~~v~ 285 (1141)
.+- +.+......... ..|.-|+.|+-...+.
T Consensus 217 E~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 217 EMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp CCC--SHHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred CCC--CHHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 994 344443332222 3455677777665433
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.04 E-value=0.086 Score=52.52 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=49.5
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh---------------------------HHHHHHhcCcc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN---------------------------SQLRRLLRGRR 243 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~---------------------------~~l~~~l~~k~ 243 (1141)
.|.+.|.||+||||+|..+..... ...++. ..+.+.+.-. ..+.+.+..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V-~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~p 85 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVRV-MAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAP 85 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCCE-EEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCCE-EEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcCC
Confidence 477889999999999877765321 222332 2223221000 12344444455
Q ss_pred eeeeecCCCCC------ChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 244 YLLVLDDVWNE------DHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 244 ~LlvlDdvw~~------~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
=++|+|++-.. ...-|.++...++ .|-.|+.|+.-+
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 69999986321 1236777766554 355688887643
No 264
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.85 E-value=0.13 Score=51.62 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=48.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc---------------------hhHHHHHHhc----Cc-c
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---------------------FNSQLRRLLR----GR-R 243 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---------------------~~~~l~~~l~----~k-~ 243 (1141)
.++.|+|..|+||||++..+.++...++ ..++.+....+ ....+.+.+. +. .
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 5889999999999999987765321111 11222211110 0012333332 23 4
Q ss_pred eeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 244 YLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 244 ~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
-+||+|.+..-+.+..+.+ ..+.+ .|..||+|-+..
T Consensus 91 dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred CEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 4999999854333444444 33333 267899998753
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.77 E-value=0.33 Score=49.22 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+++|+|+.|.|||||.+.+..-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999763
No 266
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.76 E-value=0.083 Score=56.75 Aligned_cols=35 Identities=37% Similarity=0.355 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 171 EAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 171 ~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-++++.+..-+. + ..++|+|.+|+|||+|++.+.+
T Consensus 163 iraID~l~Pigr---G---QR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIGK---G---QRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCBT---T---CEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhcccccC---C---ceEEEecCCCCChhHHHHHHHH
Confidence 466777765421 1 2679999999999999998877
No 267
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.71 E-value=0.24 Score=56.53 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHH---------
Q 001145 167 EEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRR--------- 237 (1141)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~--------- 237 (1141)
.+.++.+...+... + +.+.|.|.+|+||||++..+.......+ ...++.+..+......+++
T Consensus 31 ~~av~~~~~~i~~~-------~-~~~li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~~~~~~T~ 101 (459)
T 3upu_A 31 KNAFNIVMKAIKEK-------K-HHVTINGPAGTGATTLTKFIIEALISTG-ETGIILAAPTHAAKKILSKLSGKEASTI 101 (459)
T ss_dssp HHHHHHHHHHHHSS-------S-CEEEEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHHSSCEEEH
T ss_pred HHHHHHHHHHHhcC-------C-CEEEEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEecCcHHHHHHHHhhhccchhhH
Confidence 34445555555543 1 2889999999999999998876322111 1234444444333332222
Q ss_pred --Hhc--------------------CcceeeeecCCCCCChHHHHHHHHhccCCCCCcEEEEEcCc
Q 001145 238 --LLR--------------------GRRYLLVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRS 281 (1141)
Q Consensus 238 --~l~--------------------~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~ 281 (1141)
.+. .+--++|+|++...+...+..+...++ .+.++++.--.
T Consensus 102 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~ 164 (459)
T 3upu_A 102 HSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDN 164 (459)
T ss_dssp HHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECT
T ss_pred HHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCH
Confidence 221 123488999986666667777776664 45677776543
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.62 E-value=0.051 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.-.+|+|+|+.|.|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999876
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.61 E-value=0.03 Score=54.55 Aligned_cols=19 Identities=47% Similarity=0.730 Sum_probs=18.4
Q ss_pred EEEEEecCcchHHHHHHHH
Q 001145 191 VIPIVGLGGIGKTTLAQLA 209 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v 209 (1141)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.58 E-value=0.062 Score=56.89 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+++++..+.... .......+|.|.|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~l~~~--~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 14 NRLNDNLEELIQGK--KAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHTTC--CCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555444431 1223467999999999999999999975
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.57 E-value=0.036 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.1
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+++|+|+.|+||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999873
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.47 E-value=0.033 Score=54.37 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 273
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.43 E-value=0.13 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 3899999999999999999965
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.38 E-value=0.037 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.33 E-value=0.036 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999976
No 276
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.26 E-value=0.092 Score=51.02 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHhcCcce-eeeecCCCC---CChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 235 LRRLLRGRRY-LLVLDDVWN---EDHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 235 l~~~l~~k~~-LlvlDdvw~---~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
.++.+.+.+| |+|||++-. -.....+.+...+........||+|+|..
T Consensus 112 a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 112 GKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 3444544444 999999811 11123455666666666778899999984
No 277
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.23 E-value=0.072 Score=55.34 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 168 EDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+.++..+.... .......+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGK--KSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTC--CCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555555432 1233567999999999999999999976
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.23 E-value=0.034 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|+|+.|+||||+|+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 279
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.19 E-value=0.089 Score=56.43 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 164 VGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 164 vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
|+.++-.+++++.+...-.. .....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 45566667777776543111 1456789999999999999998876
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.05 E-value=0.04 Score=53.84 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999976
No 281
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.04 E-value=0.082 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998763
No 282
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.02 E-value=0.052 Score=60.11 Aligned_cols=50 Identities=28% Similarity=0.366 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHHHhC------CC--CCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 162 EVVGREEDKEAMIDLLASN------GA--SGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~------~~--~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|.+..++.+...+... +. .........|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4789998888888777311 00 00011235788999999999999999987
No 283
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.01 E-value=0.3 Score=58.84 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=73.6
Q ss_pred CccccchHHHHHHHHHHHhCCC------CCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc----
Q 001145 161 SEVVGREEDKEAMIDLLASNGA------SGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED---- 230 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---- 230 (1141)
..+.|.++.+++|.+.+.-.-. .......+-|.++|++|.|||.+|+++++... .. ++.++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~~~l~s 549 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKGPELLT 549 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEeccchhhc
Confidence 4577888888887665432200 01112345678999999999999999998432 22 2233211
Q ss_pred -----hhHHHHHHh----cCcceeeeecCCCCC--C--------h----HHHHHHHHhccCCC--CCcEEEEEc-CchHH
Q 001145 231 -----FNSQLRRLL----RGRRYLLVLDDVWNE--D--------H----EEWDKLRVSLSDGA--EGSRVIVTT-RSAKV 284 (1141)
Q Consensus 231 -----~~~~l~~~l----~~k~~LlvlDdvw~~--~--------~----~~~~~l~~~l~~~~--~gs~ilvTt-r~~~v 284 (1141)
....+++.+ +..+++|++|++..- . . .....+...+.... .+.-||-|| |...+
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 111333333 456899999998321 0 0 11223343343222 232333344 33322
Q ss_pred HHhh----CCCCceeCCCCCHHHHHHHHhhcc
Q 001145 285 ATIV----GTIPPYYLKGLSHDDCWTLFKQRA 312 (1141)
Q Consensus 285 ~~~~----~~~~~~~l~~l~~~~~~~lf~~~~ 312 (1141)
-..+ .-...+.+..-+.++..++|+.+.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2221 234567777767777777777665
No 284
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.96 E-value=0.22 Score=53.81 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=52.5
Q ss_pred EEEEEecCcchHHHHHHHHHcCccc-------cc--------ccceEEEEE-eCcchhHHHHHHhcCcceeeeecCCCCC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKV-------TK--------SFELKIWVC-VNEDFNSQLRRLLRGRRYLLVLDDVWNE 254 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~-------~~--------~f~~~~wv~-~~~~~~~~l~~~l~~k~~LlvlDdvw~~ 254 (1141)
+++|+|+.|.|||||++.+..-... .+ +-..+.++. ..+.....+.+.+..++=++++|++-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~- 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS- 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh-
Confidence 8999999999999999999753110 00 001111221 234555688888888899999999843
Q ss_pred ChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 255 DHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 255 ~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
.+.++.+. .+..++. -+|+||...
T Consensus 252 -~e~~~~l~-~~~~g~~--tvi~t~H~~ 275 (330)
T 2pt7_A 252 -SEAYDFYN-VLCSGHK--GTLTTLHAG 275 (330)
T ss_dssp -THHHHHHH-HHHTTCC--CEEEEEECS
T ss_pred -HHHHHHHH-HHhcCCC--EEEEEEccc
Confidence 34455443 3433222 255555443
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.87 E-value=0.058 Score=53.79 Aligned_cols=23 Identities=43% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|+|+.|.||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.81 E-value=0.042 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+.|.|+|+.|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999976
No 287
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.81 E-value=0.11 Score=56.47 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=31.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHH
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQ 234 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 234 (1141)
-.++.|+|++|+||||||.+++.... ..=..++|+.....++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH
Confidence 36999999999999999999986322 111246788776655543
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.77 E-value=0.042 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999986
No 289
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.73 E-value=0.11 Score=55.56 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 164 VGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 164 vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|....+..+...+.... ....+.+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~---~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP---EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC---CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC---CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444555555454431 123577999999999999999998865
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.61 E-value=0.067 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 291
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.59 E-value=0.058 Score=57.74 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+.+||+|.|-|||||||.|..+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 568999999999999999876653
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.57 E-value=0.057 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 293
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.55 E-value=0.084 Score=53.56 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcC
Q 001145 166 REEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 166 r~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~-------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRES-------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH-------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc-------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555555433 4679999999999999999988763
No 294
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.50 E-value=0.063 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 295
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.48 E-value=0.022 Score=67.21 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=48.6
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceE-------EEEEeCcc-hhH-------HHHHHhcCcceeeeecCCCCCC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELK-------IWVCVNED-FNS-------QLRRLLRGRRYLLVLDDVWNED 255 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~-------~wv~~~~~-~~~-------~l~~~l~~k~~LlvlDdvw~~~ 255 (1141)
-|.++|++|+|||+||+.+++... +..|... .-..+..+ +.. .+. ....-++++|++....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~-r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~---~A~~gil~IDEid~l~ 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP-RAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV---LADGGIAVIDEIDKMR 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS-CEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH---HHSSSEECCTTTTCCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCC-CceecCCCccccccccceeeeccccccccccCCeeE---ecCCCcEEeehhhhCC
Confidence 478999999999999999987321 1111100 00000000 000 111 1234689999997766
Q ss_pred hHHHHHHHHhccCCC-------------CCcEEEEEcCc
Q 001145 256 HEEWDKLRVSLSDGA-------------EGSRVIVTTRS 281 (1141)
Q Consensus 256 ~~~~~~l~~~l~~~~-------------~gs~ilvTtr~ 281 (1141)
......+...+..+. ....||.||-.
T Consensus 405 ~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 405 DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECC
T ss_pred HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCC
Confidence 666677766664322 24557777754
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.42 E-value=0.058 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999998653
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.42 E-value=0.065 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 298
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.32 E-value=0.36 Score=56.45 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=49.7
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEE-eCcchhHHH-----------HHHhcC-------------ccee
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVC-VNEDFNSQL-----------RRLLRG-------------RRYL 245 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~l-----------~~~l~~-------------k~~L 245 (1141)
++.|.|.+|.||||++..+..... .. ...+.+. .+......+ .+.+.. +--+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~--~~-g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dv 282 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAE--SL-GLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDL 282 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH--HT-TCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH--hc-CCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCE
Confidence 888999999999999998876322 11 1233333 333222222 223311 1248
Q ss_pred eeecCCCCCChHHHHHHHHhccCCCCCcEEEEEc
Q 001145 246 LVLDDVWNEDHEEWDKLRVSLSDGAEGSRVIVTT 279 (1141)
Q Consensus 246 lvlDdvw~~~~~~~~~l~~~l~~~~~gs~ilvTt 279 (1141)
+|+|++..-+...+..+...++ .+.++|+.-
T Consensus 283 lIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 283 LIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp EEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred EEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 9999986556666666766554 456777653
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.25 E-value=0.064 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.234 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|.|.|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 300
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.23 E-value=0.19 Score=54.42 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHhcCcceeeeecCCCCC-ChHHHHHHHHhccCC--CCCcEEEEEcCchHHHHh
Q 001145 234 QLRRLLRGRRYLLVLDDVWNE-DHEEWDKLRVSLSDG--AEGSRVIVTTRSAKVATI 287 (1141)
Q Consensus 234 ~l~~~l~~k~~LlvlDdvw~~-~~~~~~~l~~~l~~~--~~gs~ilvTtr~~~v~~~ 287 (1141)
.+.+.|..++-++++|..-.. |...-..+...+..- ..|..||++|-+..++..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 466677778889999986331 333333343333321 236678888888666554
No 301
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.19 E-value=0.13 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|+|..|+||||||+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998876
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.17 E-value=0.066 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|+|+.|+||||+++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.14 E-value=0.053 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999976
No 304
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.04 E-value=0.085 Score=52.90 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|+|+.|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999986
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.03 E-value=0.07 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999976
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.03 E-value=0.066 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999986
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.02 E-value=0.052 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35788999999999999999985
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.00 E-value=0.068 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=21.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+|+|+|+.|+|||||++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999863
No 309
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.99 E-value=0.39 Score=51.99 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999975
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.99 E-value=0.062 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 311
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.94 E-value=0.085 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.9
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.93 E-value=0.083 Score=53.14 Aligned_cols=23 Identities=48% Similarity=0.417 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|+|+.|.|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999976
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.92 E-value=0.074 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|.|++|+||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.87 E-value=0.07 Score=53.38 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.85 E-value=0.083 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+..+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.83 E-value=0.058 Score=53.01 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999986
No 317
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.82 E-value=0.049 Score=53.06 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|.|+|+.|+|||||++++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 318
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.81 E-value=0.075 Score=53.14 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999986
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.76 E-value=0.086 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.6
Q ss_pred CceEEEEEEecCcchHHHHHHHHHc
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...++|.|.|++|+||+|.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999986
No 320
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.72 E-value=0.077 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999886
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.71 E-value=0.058 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|+|+.|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 322
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.70 E-value=0.082 Score=55.20 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 323
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.64 E-value=0.14 Score=56.68 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEEecCcchHHHHHHHHHcCcc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEK 214 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~ 214 (1141)
.++|.|..|+|||+|+.++.+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~ 176 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQAT 176 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCB
T ss_pred EEEEeCCCCcChHHHHHHHHHHHH
Confidence 468999999999999999987543
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.62 E-value=0.091 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.61 E-value=0.081 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 326
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.60 E-value=0.064 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999975
No 327
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.59 E-value=0.075 Score=51.59 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.54 E-value=0.1 Score=51.15 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 329
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.53 E-value=0.2 Score=52.58 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=32.7
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHH
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRR 237 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~ 237 (1141)
++-|.|++|+||||||.++.........=..++|+...+.++....+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~ 76 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLR 76 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHH
Confidence 78999999999999998887632211012467899887776654333
No 330
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.52 E-value=0.1 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.++.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999999986
No 331
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.47 E-value=0.083 Score=51.81 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-++|+|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999985
No 332
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.46 E-value=0.16 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.015 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 333
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.46 E-value=0.51 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 899999999999999999975
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.42 E-value=0.079 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|.|++|+||||+|+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 335
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.41 E-value=0.089 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+|+|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999763
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.40 E-value=0.092 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.31 E-value=0.092 Score=53.53 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999975
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.22 E-value=0.072 Score=52.22 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 339
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.21 E-value=0.095 Score=54.21 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|+|+.|+||||+++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 340
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.19 E-value=0.2 Score=56.00 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.++|+|..|+|||||++.+..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 6889999999999999988764
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.16 E-value=0.096 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999976
No 342
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.12 E-value=0.43 Score=65.44 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=61.0
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchh-----HHHHHHh---------------cCcceeeeecC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFN-----SQLRRLL---------------RGRRYLLVLDD 250 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-----~~l~~~l---------------~~k~~LlvlDd 250 (1141)
-|.++|++|+|||++|+.+.... ..+. .+.+..+.... ..+...+ .+|+.++.+||
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~---~~~~-~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS---SLYD-VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC---SSCE-EEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHhcC---CCCc-eEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecc
Confidence 67799999999999997776532 1232 23444443221 2233322 24677888999
Q ss_pred CCCCC------hHHHHHHHHhccCCC-----C-------CcEEEEEcCchH------HHHh-hCCCCceeCCCCCHHHHH
Q 001145 251 VWNED------HEEWDKLRVSLSDGA-----E-------GSRVIVTTRSAK------VATI-VGTIPPYYLKGLSHDDCW 305 (1141)
Q Consensus 251 vw~~~------~~~~~~l~~~l~~~~-----~-------gs~ilvTtr~~~------v~~~-~~~~~~~~l~~l~~~~~~ 305 (1141)
+.-.. ....+.+...+..++ . +..+|.++-... +..+ ...-..+.+...+.++-.
T Consensus 1345 inmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~ 1424 (2695)
T 4akg_A 1345 INLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLS 1424 (2695)
T ss_dssp TTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHH
T ss_pred cccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHH
Confidence 62211 134455555544322 1 123344443221 1111 111235667777777777
Q ss_pred HHHhhcc
Q 001145 306 TLFKQRA 312 (1141)
Q Consensus 306 ~lf~~~~ 312 (1141)
.+|....
T Consensus 1425 ~I~~~il 1431 (2695)
T 4akg_A 1425 QIYEIYY 1431 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.12 E-value=0.11 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 344
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.09 E-value=0.089 Score=50.51 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999876
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.09 E-value=0.1 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.474 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+|+|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 346
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.09 E-value=0.3 Score=44.30 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=28.8
Q ss_pred eEEecCCCCc-ccccccCCCCCCcCeEeeccCCCCcccCcCCCCCCCcCEEeeccCCC
Q 001145 1021 SLCILSCPEL-ASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHT 1077 (1141)
Q Consensus 1021 ~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~~ 1077 (1141)
.++.+++.+. ..+|..+. ++|+.|+|++|.+...-+..|..+++|+.|+|++|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555542 24554332 3566666666654433334455566666666666654
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.08 E-value=0.1 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999976
No 348
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.04 E-value=0.13 Score=57.31 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=35.7
Q ss_pred CccccchHHHHHHHHHHHhC------CCCC-CCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 161 SEVVGREEDKEAMIDLLASN------GASG-FGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~------~~~~-~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|.++.++.+...+... .... .....+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46899988888887666321 0000 011235688999999999999999987
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.03 E-value=0.11 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 456999999999999999999876
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.96 E-value=0.1 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 351
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.93 E-value=0.28 Score=53.50 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.+.-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 899999999999999999975
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.93 E-value=0.11 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999976
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.92 E-value=0.11 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.84 E-value=0.088 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 355
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.75 E-value=0.38 Score=52.19 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 899999999999999999975
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.72 E-value=0.12 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.-.+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999976
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.65 E-value=0.084 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=16.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999975
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.55 E-value=0.11 Score=51.26 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.48 E-value=0.12 Score=53.52 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|+|+.|.||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999985
No 360
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.47 E-value=0.14 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 361
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.44 E-value=0.11 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999976
No 362
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.43 E-value=0.14 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.42 E-value=0.11 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 364
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.38 E-value=0.15 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.27 E-value=0.13 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 366
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.21 E-value=0.9 Score=44.31 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=48.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEE-----------eCcc----------hhHHHHHHhcCcceeeee
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVC-----------VNED----------FNSQLRRLLRGRRYLLVL 248 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-----------~~~~----------~~~~l~~~l~~k~~Llvl 248 (1141)
++..++|..|.||||.+..+.++...++ ....++-. ++.. ....+.+.+.++-=+|++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEE
Confidence 5899999999999999877765422111 11111100 0000 001344444443348999
Q ss_pred cCCCCCChHHHHHHHHhccCCCCCcEEEEEcCch
Q 001145 249 DDVWNEDHEEWDKLRVSLSDGAEGSRVIVTTRSA 282 (1141)
Q Consensus 249 Ddvw~~~~~~~~~l~~~l~~~~~gs~ilvTtr~~ 282 (1141)
|.+..-+.+..+.+.. +.+ .|..||+|.++.
T Consensus 88 DEaqfl~~~~v~~l~~-l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNK-IAE--SGRRVICAGLDM 118 (191)
T ss_dssp CSGGGSCTHHHHHHHH-HHH--TTCEEEEEECSB
T ss_pred ECCCCCCHHHHHHHHH-HHh--CCCEEEEEeccc
Confidence 9875443444444433 222 267899998754
No 367
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.21 E-value=0.66 Score=51.41 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=64.9
Q ss_pred ccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc-ccccccceEEEEEeCcchhHHHHHHhc
Q 001145 162 EVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE-KVTKSFELKIWVCVNEDFNSQLRRLLR 240 (1141)
Q Consensus 162 ~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~l~~~l~ 240 (1141)
.++|....+.++.+.+..-... .. -|.|.|..|+|||++|+.++... +....| +-+.+..-....+...|-
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~----~~-~vli~Ge~GtGK~~lAr~ih~~s~r~~~~f---v~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCA----EC-PVLITGESGVGKEVVARLIHKLSDRSKEPF---VALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTC----CS-CEEEECSTTSSHHHHHHHHHHHSTTTTSCE---EEEETTTSCHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCC----CC-CeEEecCCCcCHHHHHHHHHHhcCCCCCCe---EEEecCCCCHHHHHHHhc
Confidence 4566666677777666543111 22 34899999999999999997632 112223 233333222222222221
Q ss_pred --------------------CcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 241 --------------------GRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 241 --------------------~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
...-.++||++.+-.......+...+..+. ...+||.||..
T Consensus 210 g~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 210 GYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp CBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 112377899997766677777777665321 24578887754
No 368
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.19 E-value=0.32 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
-|+|+|.+|||||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4678999999999999988754
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.13 E-value=0.13 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+++|+|+.|+||||+++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35999999999999999999976
No 370
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.12 E-value=0.12 Score=50.63 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|+|||||++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999986
No 371
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.10 E-value=0.14 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|+|||||++.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 372
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.09 E-value=0.35 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.2
Q ss_pred CceEEEEEEecCcchHHHHHHHHHc
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
....+|+|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998875
No 373
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.08 E-value=0.21 Score=55.22 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEEecCcchHHHHHHHHHcCcc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEK 214 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~ 214 (1141)
.++|.|..|+|||+|+.++.+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred EEEEecCCCCCchHHHHHHHHHHH
Confidence 568999999999999999987544
No 374
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.06 E-value=0.13 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.06 E-value=0.099 Score=52.71 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999976
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.05 E-value=0.14 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 377
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.99 E-value=0.24 Score=53.23 Aligned_cols=24 Identities=46% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 378
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=89.89 E-value=0.36 Score=53.71 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcc
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNED 230 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 230 (1141)
++++.|..-+. + ..++|.|.+|+|||+|++.+.++.. +.+-+..+++-+.+.
T Consensus 142 r~ID~l~pigk---G---Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER 193 (482)
T 2ck3_D 142 KVVDLLAPYAK---G---GKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGER 193 (482)
T ss_dssp HHHHHHSCEET---T---CEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCC
T ss_pred EEEeccccccc---C---CeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCc
Confidence 55666664421 1 2789999999999999998876321 122344566665543
No 379
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.88 E-value=0.16 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|+|||||++.++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999999975
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.87 E-value=0.14 Score=51.66 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 381
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.82 E-value=0.18 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.1
Q ss_pred CceEEEEEEecCcchHHHHHHHHHc
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567999999999999999998875
No 382
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.82 E-value=0.22 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.79 E-value=0.15 Score=50.60 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.74 E-value=0.17 Score=50.82 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=20.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.71 E-value=0.17 Score=53.74 Aligned_cols=24 Identities=46% Similarity=0.403 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346999999999999999999986
No 386
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.71 E-value=0.45 Score=53.28 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEEecCcchHHHHH-HHHHcCcccccccce-EEEEEeCc
Q 001145 191 VIPIVGLGGIGKTTLA-QLAYNDEKVTKSFEL-KIWVCVNE 229 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~ 229 (1141)
.++|.|.+|+|||+|| ..+.+.. .-+. .+++-+.+
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGe 213 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQ 213 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESC
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCC
Confidence 6889999999999995 5777643 2342 35555554
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.68 E-value=0.15 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 388
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.49 E-value=0.16 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999998873
No 389
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.48 E-value=0.31 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.3
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+..+|+|+|.+|+|||||+..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988864
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.46 E-value=0.17 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999986
No 391
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.45 E-value=0.45 Score=51.78 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=31.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHcCccccc----ccceEEEEEeCcchh
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYNDEKVTK----SFELKIWVCVNEDFN 232 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~ 232 (1141)
-.++.|+|.+|+||||||.+++....... .-..++|+.....++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~ 169 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR 169 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC
Confidence 36999999999999999998876322211 224678888877644
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.43 E-value=0.15 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.42 E-value=0.16 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.9
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.37 E-value=0.2 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.32 E-value=0.15 Score=52.52 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|+|+.|+||||+++.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 396
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.30 E-value=0.18 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+++|+|.+|+||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999998875
No 397
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.26 E-value=0.16 Score=49.68 Aligned_cols=22 Identities=45% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 398
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.26 E-value=0.17 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 399
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.22 E-value=0.77 Score=49.87 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=33.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRL 238 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~ 238 (1141)
+++.|+|.+|+||||||.++..... ..=..++|+.....++....+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~~a~~ 108 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPEYAKK 108 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHHHHHH
Confidence 4899999999999999999875321 2223578888877665543333
No 400
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.19 E-value=0.28 Score=54.63 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=26.5
Q ss_pred EEEEEecCcchHHHHHHHHHcCcccccc--cceEEEEEeCc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDEKVTKS--FELKIWVCVNE 229 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~ 229 (1141)
.++|.|.+|+|||+|+.+++++....+. =+..+++-+.+
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGE 194 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGI 194 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccC
Confidence 5678999999999999999875433111 13455655554
No 401
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.17 E-value=0.2 Score=53.17 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+++|+|.+|+||||++..++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 457999999999999999999876
No 402
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.13 E-value=0.48 Score=51.09 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=30.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccc----cceEEEEEeCcch
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKS----FELKIWVCVNEDF 231 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~ 231 (1141)
.++.|+|.+|+||||||.+++........ -..++|+.....+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~ 153 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTF 153 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence 48999999999999999998763221110 2367888887764
No 403
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.13 E-value=0.17 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999986
No 404
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.11 E-value=0.79 Score=50.00 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=33.8
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRL 238 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~ 238 (1141)
.++.|.|.+|+||||||.++.... ...-..++|+.....++....+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~~a~~ 121 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPVYARA 121 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHHHHHH
Confidence 488899999999999998887632 22223688998887766544333
No 405
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.09 E-value=0.17 Score=51.55 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 899999999999999999986
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.03 E-value=0.2 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 407
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.00 E-value=0.23 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..-.|+|+|..|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999999864
No 408
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.96 E-value=0.14 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=15.9
Q ss_pred EEEEEEecCcchHHHHHHHHH-c
Q 001145 190 LVIPIVGLGGIGKTTLAQLAY-N 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~-~ 211 (1141)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 489999999999999999998 5
No 409
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.95 E-value=0.22 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 410
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.92 E-value=0.2 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|+|.|+.|.||||+|+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999975
No 411
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.90 E-value=0.21 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.88 E-value=0.19 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999976
No 413
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.86 E-value=0.19 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 414
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.81 E-value=0.19 Score=49.89 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.2
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|.|.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 415
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.81 E-value=0.19 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999886
No 416
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.80 E-value=0.48 Score=53.02 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=24.2
Q ss_pred EEEEEecCcchHHHHH-HHHHcCcccccccc-eEEEEEeCc
Q 001145 191 VIPIVGLGGIGKTTLA-QLAYNDEKVTKSFE-LKIWVCVNE 229 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~ 229 (1141)
.++|.|.+|+|||+|| ..+.+.. .-+ ..+++-+.+
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGe 200 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQ 200 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESC
T ss_pred EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCC
Confidence 5789999999999995 5777642 233 235555554
No 417
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.76 E-value=0.92 Score=49.77 Aligned_cols=113 Identities=25% Similarity=0.210 Sum_probs=63.7
Q ss_pred CccccchHHHHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHHHHHh-
Q 001145 161 SEVVGREEDKEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQLRRLL- 239 (1141)
Q Consensus 161 ~~~vgr~~~~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l~~~l- 239 (1141)
..++|....+.++.+.+..-... . ..|.|.|.+|+||+++|+.++........| +-+.+..-....+...|
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----~-~~vli~GesGtGKe~lAr~ih~~s~r~~~f---v~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----K-APVLITGESGTGKEIVARLIHRYSGRKGAF---VDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----C-SCEEEECCTTSSHHHHHHHHHHHHCCCSCE---EEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----c-hhheEEeCCCchHHHHHHHHHHhccccCCc---EEEEcccCChHHHHHHhc
Confidence 35778776666665554332100 1 246799999999999999998632222222 22332221111111111
Q ss_pred -------------------cCcceeeeecCCCCCChHHHHHHHHhccCCC-----------CCcEEEEEcCc
Q 001145 240 -------------------RGRRYLLVLDDVWNEDHEEWDKLRVSLSDGA-----------EGSRVIVTTRS 281 (1141)
Q Consensus 240 -------------------~~k~~LlvlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtr~ 281 (1141)
....-.++||++.+-.......+...+..+. ...|||.+|..
T Consensus 201 g~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 201 GHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp EECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred CccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 1122358999998777777778877775431 13567776654
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.70 E-value=0.2 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 419
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.63 E-value=0.15 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.62 E-value=0.21 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++.|+|.+|+||||||..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999986
No 421
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.62 E-value=0.2 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 422
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.60 E-value=0.32 Score=47.54 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.57 E-value=0.2 Score=50.83 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 424
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=88.55 E-value=0.5 Score=52.84 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF 231 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 231 (1141)
++++.|..-+. + ..++|.|.+|+|||+|+.++.++. .+.+-+..+++-+.+..
T Consensus 154 rvID~l~pigk---G---qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~ 206 (498)
T 1fx0_B 154 KVVNLLAPYRR---G---GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERT 206 (498)
T ss_dssp TTHHHHSCCCT---T---CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCS
T ss_pred eEeeeeccccc---C---CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCc
Confidence 45666654421 1 268999999999999999887732 12234566777666543
No 425
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.53 E-value=0.2 Score=52.36 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 899999999999999999986
No 426
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.52 E-value=0.31 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.306 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 427
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.51 E-value=0.2 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.49 E-value=0.22 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++|+|.|+.|+||||||..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5899999999999999999986
No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.43 E-value=0.23 Score=53.90 Aligned_cols=24 Identities=46% Similarity=0.403 Sum_probs=21.8
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999986
No 430
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.36 E-value=1.9 Score=43.04 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..--|+|+|.+|+|||||+..+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.35 E-value=0.21 Score=51.96 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 432
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.22 E-value=0.7 Score=52.39 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCc
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNE 229 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 229 (1141)
++++.|..-+. =..++|.|..|+|||+|+.++.+.. +-+..+++-+.+
T Consensus 221 rvID~l~Pigr------Gqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGE 268 (600)
T 3vr4_A 221 RVIDTFFPVTK------GGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGE 268 (600)
T ss_dssp HHHHHHSCCBT------TCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEE
T ss_pred hhhhccCCccC------CCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecc
Confidence 55676765421 1278999999999999999998732 123455554443
No 433
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.21 E-value=0.18 Score=50.36 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.++.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.15 E-value=0.22 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 435
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.14 E-value=0.22 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 899999999999999999986
No 436
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.14 E-value=0.23 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 437
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.13 E-value=0.52 Score=52.82 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=24.3
Q ss_pred EEEEEecCcchHHHHH-HHHHcCcccccccc-eEEEEEeCc
Q 001145 191 VIPIVGLGGIGKTTLA-QLAYNDEKVTKSFE-LKIWVCVNE 229 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~ 229 (1141)
.++|.|.+|+|||+|| ..+.+... -+ ..+++-+.+
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGe 201 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQ 201 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESC
T ss_pred EEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCC
Confidence 5789999999999995 57777432 33 245555554
No 438
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.13 E-value=0.24 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 439
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.11 E-value=1.4 Score=41.60 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999764
No 440
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.02 E-value=0.24 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999987
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.98 E-value=0.23 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999986
No 442
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.98 E-value=0.23 Score=51.55 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 443
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.97 E-value=0.68 Score=50.35 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=32.0
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQL 235 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l 235 (1141)
+++.|.|.+|+||||||.++..... ..=..++|+.....++...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~ 107 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY 107 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH
Confidence 4899999999999999998876322 2223578888876665443
No 444
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.96 E-value=0.41 Score=51.34 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=31.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcchhHHH
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDFNSQL 235 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~l 235 (1141)
.++.|.|.+|+||||+|..++.+....+ ..++|++.........
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~ 112 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENI 112 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHH
Confidence 3889999999999999998875322222 5678887765554433
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.94 E-value=0.22 Score=51.75 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 899999999999999999986
No 446
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.81 E-value=0.25 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999764
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.80 E-value=0.25 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999987
No 448
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=87.80 E-value=3.3 Score=43.86 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHcCc
Q 001145 170 KEAMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
.+++.+.|...+... ......|+|+|.+|+|||||..++....
T Consensus 8 ~~~l~~~l~~~~~~~-~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNA-DLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCT-TCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCC-CCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 345555555432111 1245679999999999999999998653
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.80 E-value=0.25 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=21.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|.|.|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46899999999999999999986
No 450
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.80 E-value=0.24 Score=51.21 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 451
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.76 E-value=0.24 Score=50.95 Aligned_cols=21 Identities=52% Similarity=0.706 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.73 E-value=0.28 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+.|.|.|+.|+||||||.++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 453
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.68 E-value=0.63 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHHHHHHc
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
++++.|..-+. =..++|.|..|+|||+|++++.+
T Consensus 216 rvID~l~Pigk------Gqr~~I~g~~g~GKT~L~~~ia~ 249 (588)
T 3mfy_A 216 RVIDTFFPQAK------GGTAAIPGPAGSGKTVTQHQLAK 249 (588)
T ss_dssp HHHHHHSCEET------TCEEEECSCCSHHHHHHHHHHHH
T ss_pred chhhccCCccc------CCeEEeecCCCCCHHHHHHHHHh
Confidence 55666665421 12789999999999999999876
No 454
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.68 E-value=0.27 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.1
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|+|+|-||+||||+|..+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 567999999999999999988765
No 455
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.68 E-value=0.4 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 456
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.60 E-value=2.1 Score=46.77 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 899999999999999999976
No 457
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.58 E-value=0.26 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|.+|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999985
No 458
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.54 E-value=0.51 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 459
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.54 E-value=0.56 Score=52.64 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCcchHHHHH-HHHHcCccc----ccccc-eEEEEEeCcc
Q 001145 172 AMIDLLASNGASGFGRKILVIPIVGLGGIGKTTLA-QLAYNDEKV----TKSFE-LKIWVCVNED 230 (1141)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~vv~i~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~ 230 (1141)
+.++.|..-+. + ..++|.|.+|+|||+|| ..+.+.... ..+-+ ..+++-+.+.
T Consensus 151 raID~l~Pigr---G---QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR 209 (510)
T 2ck3_A 151 KAVDSLVPIGR---G---QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQK 209 (510)
T ss_dssp HHHHHHSCCBT---T---CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCC
T ss_pred eeecccccccc---C---CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCC
Confidence 45666654421 1 25789999999999995 566664321 01233 3566666543
No 460
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.48 E-value=0.25 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999986
No 461
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.46 E-value=0.45 Score=48.96 Aligned_cols=40 Identities=30% Similarity=0.257 Sum_probs=27.1
Q ss_pred EEEEEEecCcchHHHHHHHHHcCcccccccceEEEEEeCcch
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYNDEKVTKSFELKIWVCVNEDF 231 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 231 (1141)
.++.|.|.+|+||||||.+++.... ..=..++|+......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~~ 63 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEHP 63 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCCH
Confidence 4899999999999999987765211 112346666655443
No 462
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.46 E-value=0.71 Score=51.53 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=24.6
Q ss_pred EEEEEecCcchHHHHH-HHHHcCcccccccc-eEEEEEeCcc
Q 001145 191 VIPIVGLGGIGKTTLA-QLAYNDEKVTKSFE-LKIWVCVNED 230 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~ 230 (1141)
.++|.|..|+|||+|| ..+.+.. +-+ .++++-+.+.
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR 201 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQK 201 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCC
T ss_pred EEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCC
Confidence 5789999999999996 5676631 223 2456666543
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.43 E-value=0.26 Score=51.19 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.6
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+++|+|+.|.|||||++.+..-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 8999999999999999999863
No 464
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.40 E-value=0.26 Score=51.53 Aligned_cols=22 Identities=45% Similarity=0.597 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999986
No 465
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.40 E-value=0.27 Score=50.57 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++.|+|++|+|||||++.+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3899999999999999999876
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.37 E-value=0.27 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 467
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.37 E-value=0.27 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3899999999999999999986
No 468
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.32 E-value=0.55 Score=53.47 Aligned_cols=25 Identities=44% Similarity=0.380 Sum_probs=20.9
Q ss_pred CceEEEEEEecCcchHHHHHHHHHc
Q 001145 187 RKILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 187 ~~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998875
No 469
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.25 E-value=0.27 Score=50.79 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||.+.++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 470
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.23 E-value=0.35 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999864
No 471
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.23 E-value=0.38 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999764
No 472
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.20 E-value=0.27 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHHcC
Q 001145 191 VIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
-|+|+|.+|+|||||+..+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 473
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.13 E-value=0.37 Score=46.48 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999764
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.12 E-value=0.27 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.++.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999986
No 475
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.10 E-value=0.27 Score=51.51 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
+++|+|+.|.|||||++.++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999986
No 476
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.08 E-value=0.27 Score=48.18 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 477
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.08 E-value=0.32 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.271 Sum_probs=20.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 478
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.06 E-value=0.37 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEecCcchHHHHHHHHHcCc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYNDE 213 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~~~ 213 (1141)
+++++|+.|+|||||.+.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 89999999999999999998 54
No 479
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.02 E-value=0.36 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.--|+|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999999764
No 480
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.02 E-value=0.29 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|.+|+|||||++.++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3899999999999999999876
No 481
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.02 E-value=2.1 Score=41.64 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.--|+|+|.+|+|||||+..+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999764
No 482
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.01 E-value=0.89 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999998865
No 483
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.95 E-value=0.37 Score=46.85 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999875
No 484
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.92 E-value=0.31 Score=50.85 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHHc
Q 001145 191 VIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 191 vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
No 485
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.91 E-value=0.33 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.6
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
..++|.++|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999988875
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.89 E-value=0.29 Score=47.68 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999764
No 487
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=86.84 E-value=1.8 Score=43.73 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999775
No 488
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.82 E-value=0.32 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.7
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999976
No 489
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.81 E-value=0.31 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3899999999999999998875
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.80 E-value=0.28 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999863
No 491
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.73 E-value=0.47 Score=45.75 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.2
Q ss_pred ceEEEEEEecCcchHHHHHHHHHcC
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
..--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998764
No 492
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.68 E-value=0.31 Score=46.45 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.-|+|+|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999764
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.57 E-value=0.3 Score=47.66 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHcC
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
.--|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999887664
No 494
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.53 E-value=0.32 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHcC
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYND 212 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~~ 212 (1141)
--|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 495
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.53 E-value=0.74 Score=54.41 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.+..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999975
No 496
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=86.52 E-value=2.8 Score=42.64 Aligned_cols=20 Identities=45% Similarity=0.273 Sum_probs=17.5
Q ss_pred EEEEecCcchHHHHHHHHHc
Q 001145 192 IPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 192 v~i~G~~GiGKTtLa~~v~~ 211 (1141)
+.|+|+.|.|||.+|..+..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 67889999999999987765
No 497
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.48 E-value=1.4 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.44 E-value=0.32 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.4
Q ss_pred ceEEEEEEecCcchHHHHHHHHHc
Q 001145 188 KILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 188 ~~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999886
No 499
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.43 E-value=0.36 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHc
Q 001145 189 ILVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 189 ~~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
.++|+|.|.||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 36888899999999999988875
No 500
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.42 E-value=0.42 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEEEecCcchHHHHHHHHHc
Q 001145 190 LVIPIVGLGGIGKTTLAQLAYN 211 (1141)
Q Consensus 190 ~vv~i~G~~GiGKTtLa~~v~~ 211 (1141)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
Done!