BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001146
(1140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 35/296 (11%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YITGNITISGYPKK 621
K+V L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNP 680
R G Q P +T +E++ F +++S E E RK ++EV ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIH- 131
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 737
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 132 --HVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 738 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGRHSCHLISYF 790
+ + G T++ H P+ DIF D + ++ +G +++Y P+ LI
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
Query: 791 EAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 846
+ G + +G + VS +S +GI R + + +K +I+D S
Sbjct: 245 NELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGI-------RPEDVKLSKDVIKDDS 292
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 35/296 (11%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YITGNITISGYPKK 621
K+V L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 622 QETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNP 680
R G Q P +T +E++ F +++S E E RK ++EV ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIH- 131
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 737
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 132 --HVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 738 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGRHSCHLISYF 790
+ + G T++ H P+ DIF D + ++ +G +++Y P+ LI
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
Query: 791 EAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 846
+ G + +G + VS +S +GI R + + +K +I+D S
Sbjct: 245 NELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGI-------RPEDVKLSKDVIKDDS 292
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
R +SGGQ++RV +V L +DE + LD+ L + + G ++ +
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVV 197
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQG-PREL 97
+ + + D + +L G++V G P +L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ 622
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 623 ET---FARISGYCEQNDI------------HSPFVTIYESLLFSAWLRLSPEVDSETRKM 667
R G Q+++ +P +++ E ++++A L + + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISL 67
G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H I G VI +
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVI-I 195
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 100
+ T D II++ G+IV QG +EL+ E
Sbjct: 196 IAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ 622
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 623 ET---FARISGYCEQNDI------------HSPFVTIYESLLFSAWLRLSPEVDSETRKM 667
R G Q+++ +P +++ E ++++A L + + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISL 67
G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H I G VI +
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVI-I 193
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 100
+ T D II++ G+IV QG +EL+ E
Sbjct: 194 IAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ 622
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 623 ET---FARISGYCEQNDI------------HSPFVTIYESLLFSAWLRLSPEVDSETRKM 667
R G Q+++ +P +++ E ++++A L + + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISL 67
G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H I G VI +
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVI-I 199
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 100
+ T D II++ G+IV QG +EL+ E
Sbjct: 200 IAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 21/178 (11%)
Query: 556 EMKVQGVLED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT- 610
E+K++ +++ LN ++ + G AL+G SG+GK+TL+ +AG + T G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 611 GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--EVDSETRKMF 668
++ P K R G QN P +T+Y+++ F LR +P E+D + R
Sbjct: 63 DEKDVTELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR--- 115
Query: 669 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726
EV +++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 116 --EVAKMLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGGQ++RV +V L +DE + LD+ ++ L++ + G + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR-LQKELGITTVYVTH 192
Query: 70 PAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 119
E + D I ++ +G+I+ G P E+ + PK K V FL
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV---------YYKPKYKFVGGFL 234
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 16/187 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L V+ F G + ++G +G+GKTTL+ +LAG G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 629 SGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
GY QN T+ E + FS L + +SE RK I +V+ELV L G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELV-------GLSG 132
Query: 688 LPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
L LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 746 VVCTIHQ 752
++ H+
Sbjct: 193 IILVTHE 199
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVIS 66
+SGGQK+R+ M+ L +DE + LD + FQ++ L+ N G +I
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK-----NEGKGII- 194
Query: 67 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
L+ E D D I+ +S+G I + G E +E
Sbjct: 195 LVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 16/207 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 627
L G++ + G +TA++G +G GK+TL G + + G I + Y +K R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 628 IS-GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
S G Q+ + F ++Y+ + F A PE E RK +D ++ + L+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE--DEIRKR-VDNALKRTGIEHLKDK- 139
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGR 744
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V + G
Sbjct: 140 ----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 745 TVVCTIHQPSIDIFEAF-DELFLMKRG 770
T++ H IDI + D +F+MK G
Sbjct: 196 TIIIATH--DIDIVPLYCDNVFVMKEG 220
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D+ +S GQKKRV ++V L +DE + GLD +I+ L + + G
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGIT 196
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQ 120
+I D++ ++ +G+++ QG P+E+ E + R P+ + + L+
Sbjct: 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILK 256
Query: 121 E 121
E
Sbjct: 257 E 257
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ 622
D V+L+ ++ + + G + ++G +G+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 623 ET---FARISGYCEQNDI------------HSPFVTIYESLLFSAWLRLSPEVDSETRKM 667
R G Q+++ +P +++ E ++++A L + + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISL 67
G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H I G VI +
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVI-I 195
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 100
+ T D II++ G+IV QG +EL+ E
Sbjct: 196 IAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ 622
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 623 ET---FARISGYCEQNDI------------HSPFVTIYESLLFSAWLRLSPEVDSETRKM 667
R G Q+++ +P +++ E ++++A L + + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ ++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISL 67
G+SGGQ++R+ +V L D+ ++ LD ++ + + +N+H I G VI +
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDQATSALD----YESEHVIMRNMHKICKGRTVI-I 199
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 100
+ T D II++ G+IV QG +EL+ E
Sbjct: 200 IAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 15/204 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
+ Q+ P +T+YE++ F ++ P+ + + R + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 747 VCTIHQPSIDIFEAFDELFLMKRG 770
+ ++ D + +M RG
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRG 218
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVIS 66
+SGGQ++RV +V L MDE + LD+ + + L+Q + + + I
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT----IY 197
Query: 67 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL 99
+ E + D I +++ GQ++ G P E+ L
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 15/204 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 626
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
+ Q+ P +T+YE++ F ++ P+ + + R + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 138 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 747 VCTIHQPSIDIFEAFDELFLMKRG 770
+ ++ D + +M RG
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRG 219
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVIS 66
+SGGQ++RV +V L MDE + LD+ + + L+Q + + + I
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT----IY 198
Query: 67 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL 99
+ E + D I +++ GQ++ G P E+ L
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 622
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I ++ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 623 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE------TRKMFIDEVMELV 676
R G QN P +T++E++ F R + + E RK+ ID L+
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN---LL 127
Query: 677 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
+ P + LS Q++R+ +A LV P ++ DEP S LDA I+ +
Sbjct: 128 DRKP-----------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176
Query: 737 RN 738
++
Sbjct: 177 KH 178
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ 622
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 623 ET---FARISGYCEQNDI------------HSPFVTIYESLLFSAWLRLSPEVDSETRKM 667
R G Q+++ +P +++ E ++++A L + + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISL 67
G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H I G VI +
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVI-I 193
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 100
+ T D II++ G+IV QG +EL+ E
Sbjct: 194 IAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ 622
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 623 ET---FARISGYCEQNDI------------HSPFVTIYESLLFSAWLRLSPEVDSETRKM 667
R G Q+++ +P +++ E ++++A L + + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISL 67
G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H I G VI +
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVI-I 199
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 100
+ T D II++ G+IV QG +EL+ E
Sbjct: 200 IAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFA 626
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
R G QN +T+Y+++ F + P+ + + R V EL+ L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRFMRLESYAN 140
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 745
P LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 141 RFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778
V H + E D + ++ G E + P
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGGQ++RV + L DE +D+ ++ +RQ +H G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
E ++ D +++L +G + G E V E
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNITISGYPK 620
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 621 KQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
+ T R G+ Q P +T E++ + + E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+ + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 739 -TVDTGRTVVCTIHQPSIDIF 758
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF 625
+L G++ + G AL+G SG GK+T + ++ ++ + G ++I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI-DEVMELVELNPLR-Q 683
I G Q + TI E++ + E++ ++ D +M+L P +
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL----PHQFD 517
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + G
Sbjct: 518 TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREG 575
Query: 744 RTVVCTIHQPSI----DIFEAFDELFLMKRGGQE 773
RT + H+ S D+ FD ++++G +
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
+ E +LF + + +R + +E++ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 689 P-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 740 VDTGRTVVCTIHQPS 754
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
VGD+ + +SGGQK+R+ +V L +DE ++ LD+ + + L + G
Sbjct: 1165 VGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK---AREG 1220
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 99
I ++ T D I+++ +G++ G + +L
Sbjct: 1221 RTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF 625
+L G++ + G AL+G SG GK+T + ++ ++ + G ++I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI-DEVMELVELNPLR-Q 683
I G Q + TI E++ + E++ ++ D +M+L P +
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL----PHQFD 517
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743
+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + G
Sbjct: 518 TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREG 575
Query: 744 RTVVCTIHQPSI----DIFEAFDELFLMKRGGQE 773
RT + H+ S D+ FD ++++G +
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
+ E +LF + + +R + +E++ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 689 P-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 740 VDTGRTVVCTIHQPS 754
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
VGD+ + +SGGQK+R+ +V L +DE ++ LD+ + + L + G
Sbjct: 1165 VGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK---AREG 1220
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 99
I ++ T D I+++ +G++ G + +L
Sbjct: 1221 RTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNITISGYPK 620
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 621 KQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
+ T R G+ Q P +T E++ + + E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+ + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 739 -TVDTGRTVVCTIHQPSIDIF 758
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622
+D +L +S +P + A G SG GK+T+ +L + G ITI G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 623 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-----VDSETRKMFIDEVMEL 675
E + G+ Q D TI E+L + + E +D + F++ + +
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD- 127
Query: 676 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735
+LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V +
Sbjct: 128 -QLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 736 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ +++ GRT + H+ S I +A D+++ +++G
Sbjct: 182 L-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 35/223 (15%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L G++ G AL+G SG GK+T++ +L + + G ITI G
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDG----------- 479
Query: 629 SGYCEQNDIHSPF------VTIYESLLFSAWLRLSPEVDSE--TRKMFIDEV-MELVE-- 677
+ DI+ F V E LF+ + + + E TR+ + M E
Sbjct: 480 ---VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536
Query: 678 ---LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
L +LVG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV +
Sbjct: 537 IKTLPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 735 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
+ + GRT + H+ S I A +L + + GQ + VG
Sbjct: 596 AL-DKAAKGRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 22/194 (11%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QET 624
+L G+S + PG AL+G SG GK+T++ +L + + G I I G K + T
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 625 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP------EVDSETRKMFIDEVMELVEL 678
++I+ ++ + +I E++++ L P +V+ R I + EL
Sbjct: 1152 RSQIAIVSQEPTLFD--CSIAENIIYG----LDPSSVTMAQVEEAARLANIHNF--IAEL 1203
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
++ VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V + +
Sbjct: 1204 PEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL-D 1261
Query: 739 TVDTGRTVVCTIHQ 752
GRT + H+
Sbjct: 1262 RAREGRTCIVIAHR 1275
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 42/160 (26%)
Query: 1 MVGDEMIRG--ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 58
+VGD RG +SGGQK+R+ +V L +DE ++ LD+ + + L +
Sbjct: 547 LVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603
Query: 59 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADF 118
+ T +I+ DL II +GQ+V G
Sbjct: 604 RT-TIIIAHRLSTIRNADL---IISCKNGQVVEVG------------------------- 634
Query: 119 LQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQ 158
D R A + Y VT Q F +A S G+
Sbjct: 635 --------DHRALMAQQGLYYDLVTAQTFTDAVDSAAEGK 666
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQN 635
G +TAL+G SG+GK+T++ +L + +G I++ G+ +Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGL 694
+ S +I E++ + A S + R + + + P ++VG GV L
Sbjct: 428 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 484
Query: 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754
S Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H+ S
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS 543
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 52
+SGGQK+R+ ++ L +DE ++ LD+ + + L
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL 526
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQN 635
G +TAL+G SG+GK+T++ +L + +G I++ G+ +Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGL 694
+ S +I E++ + A S + R + + + P ++VG GV L
Sbjct: 459 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 515
Query: 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754
S Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H S
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHLS 574
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 52
+SGGQK+R+ ++ L +DE ++ LD+ + + L
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL 557
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQE 623
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 624 TFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLR 682
G Q P +T+ ++ + +R P +E + MEL++ L+
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK------AMELLDKVGLK 129
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 130 DKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 187
Query: 743 GRTVVCTIHQ 752
G T+V H+
Sbjct: 188 GMTMVVVTHE 197
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 10 ISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68
+SGGQ +RV + + P + LF DE ++ LD ++++ ++Q N G ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 195
Query: 69 QPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 122
++ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 241
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQE 623
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 624 TFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLR 682
G Q P +T+ ++ + +R P +E + MEL++ L+
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK------AMELLDKVGLK 150
Query: 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 151 DKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208
Query: 743 GRTVVCTIHQ 752
G T+V H+
Sbjct: 209 GMTMVVVTHE 218
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 10 ISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68
+SGGQ +RV + + P + LF DE ++ LD ++++ ++Q N G ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 216
Query: 69 QPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 122
++ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 262
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 636
G +G SG GK+TL+ ++AG +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696
P +++ E++ F L+L+ E +++V E+++L L L P LS
Sbjct: 85 ALYPHLSVAENMSFG--LKLA-GAKKEVINQRVNQVAEVLQLAHL---LDRKP--KALSG 136
Query: 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 754
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 755 IDIFEAFDELFLMKRG 770
++ D++ ++ G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGT 62
D + +SGGQ++RV G +V +DE + LD++ Q+ + R +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--LHKRLGR 185
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 97
+I + E L D I++L G++ G P EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 636
G +G SG GK+TL+ ++AG +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696
P +++ E++ F L+L+ E +++V E+++L L L P LS
Sbjct: 85 ALYPHLSVAENMSFG--LKLA-GAKKEVINQRVNQVAEVLQLAHL---LDRKP--KALSG 136
Query: 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 754
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 755 IDIFEAFDELFLMKRG 770
++ D++ ++ G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGT 62
D + +SGGQ++RV G +V +DE + LD++ Q+ + R +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--LHKRLGR 185
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 97
+I + E L D I++L G++ G P EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG------YPKKQETFARI 628
+ G L+G SG GKTT + ++AG + G G+ ++ P K A +
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
Q+ P +T+Y+++ F LR P + + R V E+ EL L + L
Sbjct: 87 F----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR------VREVAELLGLTELLNRK 136
Query: 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTV 746
P LS QR+R+ + +V P + MDEP S LDA+ + MR + G T
Sbjct: 137 P--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAELKKLQRQLGVTT 193
Query: 747 VCTIHQPSIDIFEAFDELFLMKRG 770
+ H ++ D + +M RG
Sbjct: 194 IYVTHD-QVEAMTMGDRIAVMNRG 216
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
R +SGGQ++RV G +V MDE + LD+ ++ L++ + G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGVTTIYV 196
Query: 68 LQPAPETYDLFDDIILLSDG 87
E + D I +++ G
Sbjct: 197 THDQVEAMTMGDRIAVMNRG 216
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 563 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNITIS 616
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G ++
Sbjct: 11 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 617 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET--RKMFIDEVME 674
P+ + + Q + P V+ + L +A + ET R F D + E
Sbjct: 70 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 126
Query: 675 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 186
Query: 735 TVRNTVDTGRTVVCTIH 751
V + D R+ + H
Sbjct: 187 GVNSLRDGKRSFIIVTH 203
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG------Y 618
D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
P ++ + Q + P VTI L + +L EV F +V + +EL
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALEL 128
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
+S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 129 LDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 36.6 bits (83), Expect = 0.077, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVI 65
G SGG+KKR +++V +DE +GLD + VN +R N G VI
Sbjct: 143 GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP---NFGALVI 199
Query: 66 SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRK 113
+ Q Y D + ++ DG++V G EL LE A G+ K K
Sbjct: 200 THYQRI-LNYIQPDKVHVMMDGRVVATGGPELALELEAK-GYEWLKEK 245
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 563 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNITIS 616
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G ++
Sbjct: 30 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 617 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET--RKMFIDEVME 674
P+ + + Q + P V+ + L +A + ET R F D + E
Sbjct: 89 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 145
Query: 675 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 146 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 205
Query: 735 TVRNTVDTGRTVVCTIH 751
V + D R+ + H
Sbjct: 206 GVNSLRDGKRSFIIVTH 222
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 636
G +G SG GK+TL+ ++AG +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696
P +++ E++ F L+L+ E +++V E+++L L L P LS
Sbjct: 85 ALYPHLSVAENMSFG--LKLA-GAKKEVINQRVNQVAEVLQLAHL---LDRKP--KALSG 136
Query: 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 754
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 755 IDIFEAFDELFLMKRG 770
++ D++ ++ G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGT 62
D + +SGGQ++RV G +V +D+ + LD++ Q+ + R +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR--LHKRLGR 185
Query: 63 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 97
+I + E L D I++L G++ G P EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 21/159 (13%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISG-----YPKKQETFARI 628
+ G L+G SG GKTT + +AG T G YI N+ P K+ A +
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
Q+ P T+Y+++ F LR P+ + + R + E + L EL L
Sbjct: 90 F----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL------LNRK 139
Query: 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727
P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 140 P--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 40/229 (17%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
+L G++ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---- 85
Query: 627 RISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+ + +H+ + E LLF R + TR ++E+ + + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGAHDFI 139
Query: 686 VGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
G P G +G LS QR+ + +A L+ P ++ +D+ TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLL 199
Query: 737 RNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 771
+ + RTV+ HQ S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 10/201 (4%)
Query: 564 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNITISGYPK 620
E+ + L V+ + G ++ G SG+GK+T ++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 621 KQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
+ T R G+ Q P +T E++ + E R+ E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL 134
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
+ + LS Q++R+ IA L NP II DEPT LD++ + + ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 739 -TVDTGRTVVCTIHQPSIDIF 758
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 28/198 (14%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L ++ + G A +G+SG GK+TL++++ + +G I I G+ K +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 629 S---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
G +Q++I T+ E++L P E EV+E ++ +
Sbjct: 414 RNQIGLVQQDNILFS-DTVKENILLG-----RPTATDE-------EVVEAAKMANAHDFI 460
Query: 686 VGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
+ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +I+ +
Sbjct: 461 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 520
Query: 737 RNTVDTGRTVVCTIHQPS 754
+ + RT + H+ S
Sbjct: 521 -DVLSKDRTTLIVAHRLS 537
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
VG+ ++ +SGGQK+R++ + + L +DE ++ LD + + +++ + + S
Sbjct: 471 VGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE----SIIQEALDVLSK 525
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELV 98
++ T D I+++ +G IV G REL+
Sbjct: 526 DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 19/219 (8%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK---KQETFA 626
L+ VS + G AL+G SG+GK+T+ ++ + +G+I + G+ K
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDEVMELVELNPL-RQS 684
R QN +H TI ++ ++A + E ++ R+ ME +E P +
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQA---HAMEFIENMPQGLDT 472
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 744
++G G S LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +
Sbjct: 473 VIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNK 530
Query: 745 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 783
TV+ H+ S E DE+ ++ G EI GRH+
Sbjct: 531 TVLVIAHRLS--TIEQADEILVVDEG--EII--ERGRHA 563
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGGQ++RV ++ A L +DE ++ LD+ + I L + + N VI+
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQKNKTVLVIA--- 536
Query: 70 PAPETYDLFDDIILLSDGQIVYQG 93
T + D+I+++ +G+I+ +G
Sbjct: 537 HRLSTIEQADEILVVDEGEIIERG 560
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 557 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616
M++Q V E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 617 GYPKKQETFARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
G P + + +++ Y Q PF T W L+ +TR +++V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 674 ELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 727
+ L + L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVA 167
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIH 751
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 26/204 (12%)
Query: 557 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616
M++Q V E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 617 GYPKKQETFARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
G P + + +++ Y Q PF T W L+ +TR +++V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 674 ELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 727
+ L + L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVA 167
Query: 728 AAAIVMRTVRNTVDTGRTVVCTIH 751
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 14/186 (7%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 625
+L G+S G + L+G +GAGKTT + +++ +G +T+ G + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVVEEPHEVR 87
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
IS E+ + I E L F A S SE +M ++ E+ L +
Sbjct: 88 KLISYLPEEAGAYRNMQGI-EYLRFVAGFYASSS--SEIEEM-VERATEIAGLGEKIKDR 143
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
V S S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 V-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 746 VVCTIH 751
++ + H
Sbjct: 199 ILVSSH 204
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L +SG R G + L+G +GAGK+TL+ AG +G G+I +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 630 ---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSL 685
Y Q PF T W L+ +TR +++V + L + L +S
Sbjct: 73 LHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 686 VGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 740
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
G +V + H + + A L +GG+ + G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L+GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 630 GYCEQNDIHSPF----VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-----LNP 680
Y +P +T+ E+LL ++S K +I + E+VE L
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
L+ S + LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
G T + H+ I + D L++M G
Sbjct: 201 AKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 36/222 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISG--------- 617
L+GVS + G +T ++G +G+GK+TL++V+ G G N I+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 618 ---------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 668
P K+ T E N SP SL + W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 669 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
+++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 729 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L+GV+ + +PG L A++G +G+GK+TLM+++ + G + + + +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDL 415
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688
G+ E++LFS ++ + + E DE++E ++ + ++ L
Sbjct: 416 RGHIS--------AVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIISL 465
Query: 689 P---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
P G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 67
R SGGQK+R++ +V L +D+ ++ +D T +I++ L++ G +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR---YTKGCTTFII 534
Query: 68 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
Q P T L D I++L +G++ G + +LE
Sbjct: 535 TQKIP-TALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 13/194 (6%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 637
G AL+G +G+GK+T+ +L G G ++ Y + + I G Q+ I
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNR--NSIRSIIGIVPQDTI 103
Query: 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLST 696
TI ++L+ EV T+ ++ + +E P + ++VG G+ LS
Sbjct: 104 LFN-ETIKYNILYGKLDATDEEVIKATKSA---QLYDFIEALPKKWDTIVGNKGMK-LSG 158
Query: 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756
+R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ S
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS-- 215
Query: 757 IFEAFDELFLMKRG 770
+ + + L+ +G
Sbjct: 216 TISSAESIILLNKG 229
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF---QIVNCLRQNIH 57
+VG++ ++ +SGG+++R+ ++ + DE ++ LDS T + + V LR+N
Sbjct: 148 IVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-- 204
Query: 58 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 101
+ ++ T + IILL+ G+IV +G + +L+
Sbjct: 205 -----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L +SG R G + L+G +GAGK+TL+ AG +G G+I +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 630 ---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSL 685
Y Q PF T W L+ +TR +++V + L + L +S
Sbjct: 73 LHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 686 VGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 740
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777
G +V + H + + A L +GG+ + G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----YPKKQET 624
+L G+S + + G +++G SG+GK+TL+ +L G + + G Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 625 FA---RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681
R G+ Q P +T E+++ P+ +++ R ++ L EL L
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG-L 130
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
L P LS +++R+ IA L P ++F DEPT LD+ VM +
Sbjct: 131 GDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 742 TGRTVVCTIHQ 752
G ++V H+
Sbjct: 189 GGTSIVMVTHE 199
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 2 VGDEMIRG---ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 58
+GD++ R +SGG+++RV + + LF DE + LDS+ T ++++ + I
Sbjct: 130 LGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF---LKI 186
Query: 59 NSGTAVISLLQPAPETYDLFDDIILLSDGQIV 90
N G I ++ E +L + + DG++V
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 36/222 (16%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISG--------- 617
L+GVS + G +T ++G +G+GK+TL++V+ G G N I+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 618 ---------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 668
P K+ T E N SP SL + W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 669 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728
+++E ++L+ L G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 729 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 637
G + A++G +G GK+TL+D+L G R G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI-GFVPQF-F 75
Query: 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697
SPF S+L + S +++ + D + + L+ L + + + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 756
QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Query: 757 IFEAFDELFLMKR 769
+ A L L K+
Sbjct: 193 VAIANKTLLLNKQ 205
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 16/185 (8%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGY 631
+ G + ++G +G GK+T + +LAG+ N + G + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 632 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPG 690
+ + +V + + + L + D ET K+ +EV++ +EL N L +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLERE------ 155
Query: 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 750
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 751 HQPSI 755
H ++
Sbjct: 216 HDLAV 220
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYC 632
G + G + ++G +G GKTT + LAG T G I ++T++ P+ Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YI 356
Query: 633 EQNDIHSPFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691
+ + YE ++ ++ + +++S K + + + +++L V
Sbjct: 357 KAD---------YEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE--------V 399
Query: 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVE 459
Query: 752 QPSIDIFEAFDELFLMK 768
+ I D L + +
Sbjct: 460 HDVLXIDYVSDRLXVFE 476
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 11/190 (5%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQETFA 626
LN VS G + ++G SGAGK+TL+ ++L G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 686
R + I F + +F + L E+D+ + V EL+ L L
Sbjct: 104 RR----QIGXIFQHFNLLSSRTVFGN-VALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 745
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 746 VVCTIHQPSI 755
++ H+ +
Sbjct: 217 ILLITHEXDV 226
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D +SGGQK+RV + L D+ ++ LD +TT I+ L+ +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
++ + + D + ++S+G+++ Q + V E F+ PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQ 265
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 624
+++L G++ RPG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQY- 84
Query: 625 FARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
E +H + E +F L+ + T+K ++E+ +
Sbjct: 85 --------EHRYLHRQVAAVGQEPQVFGRSLQENIAY-GLTQKPTMEEITAAAVKSGAHS 135
Query: 684 SLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 136 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 735 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
+ + + V I Q + + E D + ++ G
Sbjct: 196 LLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
DE +SGGQ++ V ++ L +D+ ++ LD+++ Q+ L ++ S +
Sbjct: 149 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSV 208
Query: 64 V-----ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
+ +SL++ A D I+ L G I G + ++E
Sbjct: 209 LLITQHLSLVEQA-------DHILFLEGGAIREGGTHQQLME 243
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ---- 85
Query: 627 RISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+ + +H+ + E LLF R + TR ++E+ + + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGAHDFI 139
Query: 686 VGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
G P G +G LS QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 737 RNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 771
+ + RTV+ Q S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 626
+L G++ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---- 85
Query: 627 RISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+ + +H+ + E LLF R + TR ++E+ + + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTMEEITAVAMESGAHDFI 139
Query: 686 VGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
G P G +G L+ QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 737 RNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELFLMKRGG 771
+ + RTV+ Q S+ + E L LM+RGG
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 44/238 (18%)
Query: 535 LPFEPHSLTFDEV------VYSVDMPEEMK--------VQGVLEDKLVLLNGVSGAFRPG 580
LP E + DE+ V +D+ +++K ++ + + +LV+ NG + + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEG 294
Query: 581 VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQETFARISGYCEQNDIH 638
+ ++G +G GKTT +L G T G +T I Y K Q F G +Q +
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQYLEN 353
Query: 639 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698
+ ++L S+W F +EV + + L+ L +S V+ LS +
Sbjct: 354 AS----KDALSTSSW--------------FFEEVTKRLNLHRLLES-----NVNDLSGGE 390
Query: 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 755
++L IA L + +D+P+S LD IV + ++ + V I H SI
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 35/244 (14%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG---YCEQ 634
+ + ++G +G GKTT++ +LAG + N + K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 635 NDIHSPFVTIYESLLF----SAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQSL 685
+++S + I + + S +L+ + ++D +K DEV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
+ GL +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKY 189
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNP 805
V+ H + + + +L + G +Y GR S + A G+ GY P
Sbjct: 190 VIVVDH--DLIVLDYLTDLIHIIYGESSVY----GRVSKS----YAARVGINNFLKGYLP 239
Query: 806 ATWM 809
A M
Sbjct: 240 AENM 243
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 35/217 (16%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 625
+LN +S + PG + ++G SG GKTTL+ LAG + +G I++SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 626 ARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
R GY Q + P +T+Y ++ + + + + + I+ ++E
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLE--------- 124
Query: 684 SLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738
L G+ ++G LS Q++R +A L +P +I +DEP S LD + + R +R
Sbjct: 125 -LTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIRE 179
Query: 739 TV-----DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
+ G++ V H + + D + +MK+G
Sbjct: 180 DMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQND 636
G + L+G +GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696
I P +T+YE+L A+ R D E K ++ + L L++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR----KDKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY------PKKQE 623
L+ +S G ++G +GAGKT ++++AG +G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 624 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPL 681
+ QN P + + ++L F ++ P+ +T + ++ L++ NPL
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL--KIEHLLDRNPL 126
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
LS +++R+ +A LV NP I+ +DEP S LD R T +
Sbjct: 127 -----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQE 164
Query: 742 TGRTVVCTIHQ 752
R ++ +H+
Sbjct: 165 NAREMLSVLHK 175
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGG+++RV +V L +DE + LD T L +H + V+ +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITH 186
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
E + D I ++ DG+++ G E + E
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDI 637
G AL+G SG+GK+T+ ++ + G+I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG--LS 695
H T+ ++ ++ S E E +M M+ + N + L + G +G LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAY--AMDFI--NKMDNGLDTIIGENGVLLS 482
Query: 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 756 DIFEAFDELFLMKRG 770
E DE+ +++ G
Sbjct: 541 -TIEQADEIVVVEDG 554
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGGQ++R+ ++ + L +DE ++ LD+ + I L + + N + VI+
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIA--- 536
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 106
T + D+I+++ DG IV +G E A G
Sbjct: 537 HRLSTIEQADEIVVVEDGIIVERGTHS---ELLAQHG 570
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDI 637
G AL+G SG+GK+T+ ++ + G I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG--LS 695
H T+ ++ ++ + S E E +M M+ + N + L + G +G LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARMAY--AMDFI--NKMDNGLDTVIGENGVLLS 482
Query: 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 756 DIFEAFDELFLMKRG 770
E DE+ +++ G
Sbjct: 541 -TIEKADEIVVVEDG 554
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGGQ++R+ ++ + L +DE ++ LD+ + I L + + N + VI+
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIA--- 536
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 100
T + D+I+++ DG IV +G +LE
Sbjct: 537 HRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 15/206 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L VS G + G +G+GK+TL+ ++AG +G++ G KK R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 82
Query: 630 GYCEQNDIHSPFVT-IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLV 686
G Q F +++ + F A P+ D + + ME V L+ + +
Sbjct: 83 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 138
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 139 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 193
Query: 747 VCTIHQPSIDIFEAFDELFLMKRGGQ 772
+ H + D + ++++G +
Sbjct: 194 ILISHDIET-VINHVDRVVVLEKGKK 218
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGG+K+RV ++V L +DE GLD ++ + + + G VI +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLE-----FFAS 104
+ D +++L G+ V+ G R LE FF S
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 238
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 15/206 (7%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L VS G + G +G+GK+TL+ ++AG +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 80
Query: 630 GYCEQNDIHSPFVT-IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLV 686
G Q F +++ + F A P+ D + + ME V L+ + +
Sbjct: 81 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 136
Query: 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 137 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 191
Query: 747 VCTIHQPSIDIFEAFDELFLMKRGGQ 772
+ H + D + ++++G +
Sbjct: 192 ILISHDIET-VINHVDRVVVLEKGKK 216
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGG+K+RV ++V L +DE GLD ++ + + + G VI +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLE-----FFAS 104
+ D +++L G+ V+ G R LE FF S
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 236
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQETFAR 627
LN VS G + ++G SGAGK+TL+ L R T G++ + G + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 76
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
++ Q + + S + L E+D+ + V EL+ L L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 746
P S LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G T+
Sbjct: 137 YP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 747 VCTIHQ 752
+ H+
Sbjct: 195 LLITHE 200
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68
+SGGQK+RV + L DE ++ LD +TT I+ L+ +I+ G ++ +
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLTILLIT 198
Query: 69 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
+ D + ++S+G+++ Q + V E F+ PK F+Q
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQ 242
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 23/159 (14%)
Query: 585 LMGVSGAGKTTLMDVLAG--RKTGGYITGN-ITISGYPKKQETFARISGYCEQNDIHSPF 641
L+G +GAGK+ ++++AG + G + N I+ P ++ R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDE---VMELVELNPLRQSLVGLPGVSGLSTEQ 698
+++Y ++ + LR V+ + R + E + L++ P R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737
R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+SGG+++RV +V L +DE + +D T ++ LR + ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTH 185
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 119
E L D++ ++ +G+IV +G + E F++ K VA+FL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLK---ELFSA------KNGEVAEFL 226
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
L VS PG AL+G SGAGK+T++ +L + +G I I G Q T A +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 630 ---GYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI-DEVMELVELNP 680
G Q ND TI +++ + + EV++ + I D +M E
Sbjct: 128 SHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY- 180
Query: 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740
++ VG G+ LS +++R+ IA ++ P II +DE TS LD + ++ V
Sbjct: 181 --RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-V 236
Query: 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 786
RT + H+ S + D++ ++K G + GRH L
Sbjct: 237 CANRTTIVVAHRLSTVV--NADQILVIKDG----CIVERGRHEALL 276
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
VG+ ++ +SGG+K+RV ++ + +DE ++ LD+S I L + + N
Sbjct: 184 VGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRT 241
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 99
T V++ T D I+++ DG IV +G E +L
Sbjct: 242 TIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALL 276
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKK----QE 623
+L +S G L G++GAGKTTL+++L + +G + + G P K E
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAE 93
Query: 624 TFARISGYCEQNDIH-----SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 678
T + G+ + + + + S F + + + ++D E R ++++LV
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLLKLVGX 151
Query: 679 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+ Q +G LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 152 SAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%)
Query: 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69
+S G+K+RV + G L +DE + GLD +++ L A I +
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 70 PAPETYDLFDDIILLSDGQIVYQGPRELVL 99
E F I+LL DGQ + QG E +L
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 39/252 (15%)
Query: 537 FEPHSLTFDEVVYSVDMPEEMKVQ--GVLED-KLVLLNGVSGAFRPGVLTALMGVSGAGK 593
F P+ + F ++ VD+ E V+ +++D L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 594 TTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 651
TT + +LAG T G + ++T++ P Q A G T+YE L S
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYE--LLS 439
Query: 652 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711
S +++S K + + + +++L V LS + +R+ IA L+ +
Sbjct: 440 KID--SSKLNSNFYKTELLKPLGIIDLYDR--------NVEDLSGGELQRVAIAATLLRD 489
Query: 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI------ 543
Query: 772 QEIYVGPLGRHS 783
++ G GRH
Sbjct: 544 --VFEGEPGRHG 553
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAG 592
H F+ + V++PE+ L++ V GV+ + G++ ++G +G G
Sbjct: 77 HKCPFN-AISIVNLPEQ------LDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTG 129
Query: 593 KTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYE 646
KTT + +LAG+ N + + Q F R+ + + +V +
Sbjct: 130 KTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLP 189
Query: 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 706
+ L +VD + F + V EL N L + L LS + +R+ IA
Sbjct: 190 KAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------HQLSGGELQRVAIAA 241
Query: 707 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
L+ F DEP+S LD R V R +R + G+ V+ H ++
Sbjct: 242 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 290
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D + +SGG+ +RV ++ A +DE S LD + +R + N TA
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 64 VISLLQPAPETYDLFDDIILL---SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
++ + D++++ SD IV++G MG R+G+ FL
Sbjct: 526 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 570
Query: 121 EV--TSRKD 127
V T R+D
Sbjct: 571 SVGITFRRD 579
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D + +SGG+ +RV ++ A F DE S+ LD ++ +R+ N G A
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR--LANEGKA 280
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPK--RKGVADFLQ 120
V+ +++ D D+I +VY P V F+ PK R G+ +FLQ
Sbjct: 281 VL-VVEHDLAVLDYLSDVI-----HVVYGEPG--VYGIFSK-----PKGTRNGINEFLQ 326
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQETFAR 627
LN VS G + ++G SGAGK+TL+ L R T G++ + G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 99
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
++ Q + + S + L E+D+ + V EL+ L L
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 746
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T+
Sbjct: 160 YP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 747 VCTIHQ 752
+ H+
Sbjct: 218 LLITHE 223
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68
+SGGQK+RV + L D+ ++ LD +TT I+ L+ +I+ G ++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLTILLIT 221
Query: 69 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
+ D + ++S+G+++ Q + V E F+ PK F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQ 265
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 27/214 (12%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITISGYPKKQET 624
L+N VS G + A++G +GAGK+TL+ +L G + ++ G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 625 FARISGYCEQ-NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683
AR Q +++ PF ++ E + +P S+ R+ + +VM + L Q
Sbjct: 83 LARTRAVMRQYSELAFPF-SVSEVIQMGR----APYGGSQDRQA-LQQVMAQTDCLALAQ 136
Query: 684 SLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVR 737
+ LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 137 RDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 738 N-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770
T V C +H ++ A D + L+ +G
Sbjct: 192 QLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQG 224
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 39/252 (15%)
Query: 537 FEPHSLTFDEVVYSVDMPEEMKVQ--GVLED-KLVLLNGVSGAFRPGVLTALMGVSGAGK 593
F P+ + F ++ VD+ E V+ +++D L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 594 TTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 651
TT + +LAG T G + ++T++ P Q A G T+YE L S
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYE--LLS 425
Query: 652 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711
S +++S K + + + +++L V LS + +R+ IA L+ +
Sbjct: 426 KID--SSKLNSNFYKTELLKPLGIIDLYDR--------NVEDLSGGELQRVAIAATLLRD 475
Query: 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771
I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI------ 529
Query: 772 QEIYVGPLGRHS 783
++ G GRH
Sbjct: 530 --VFEGEPGRHG 539
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAG 592
H F+ + V++PE+ L++ V GV+ + G++ ++G +G G
Sbjct: 63 HKCPFN-AISIVNLPEQ------LDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTG 115
Query: 593 KTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYE 646
KTT + +LAG+ N + + Q F R+ + + +V +
Sbjct: 116 KTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLP 175
Query: 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 706
+ L +VD + F + V EL N L + L LS + +R+ IA
Sbjct: 176 KAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------HQLSGGELQRVAIAA 227
Query: 707 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
L+ F DEP+S LD R V R +R + G+ V+ H ++
Sbjct: 228 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 276
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D + +SGG+ +RV ++ A +DE S LD + +R + N TA
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 64 VISLLQPAPETYDLFDDIILL---SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 120
++ + D++++ SD IV++G MG R+G+ FL
Sbjct: 512 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 556
Query: 121 EV--TSRKD 127
V T R+D
Sbjct: 557 SVGITFRRD 565
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 63
D + +SGG+ +RV ++ A F DE S+ LD ++ +R+ N G A
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR--LANEGKA 266
Query: 64 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPK--RKGVADFLQ 120
V+ +++ D D+I +VY P V F+ PK R G+ +FLQ
Sbjct: 267 VL-VVEHDLAVLDYLSDVI-----HVVYGEPG--VYGIFSK-----PKGTRNGINEFLQ 312
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 33/200 (16%)
Query: 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 599
L D + P K QG +LN G F + +MG +G GKTTL+ +
Sbjct: 343 EDLQNDSASRAFSYPSLKKTQGDF-----VLNVEEGEFSDSEILVMMGENGTGKTTLIKL 397
Query: 600 LAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 657
LAG + G + +S P+K I F L F
Sbjct: 398 LAGALKPDEGQDIPKLNVSMKPQK---------------IAPKFPGTVRQLFF------- 435
Query: 658 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717
+ R F++ + + PLR + V LS + +R+ I + L I +
Sbjct: 436 ----KKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLI 491
Query: 718 DEPTSGLDARAAAIVMRTVR 737
DEP++ LD+ I + +R
Sbjct: 492 DEPSAYLDSEQRIICSKVIR 511
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 31/196 (15%)
Query: 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQN-- 635
RPG + L+G +G GK+T + +LAG++ G P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL--GRF--DDPPEWQEIIKYFRGSELQNYF 156
Query: 636 ------DIHSPFVTIYESLLFSA----------WLRLSPEVDSETRKMFIDEVMELVELN 679
DI + Y + A L+L E E K +I ++++L N
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI-KILQLE--N 213
Query: 680 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 739
L++ + LS + +R I + V + DEP+S LD + + +R+
Sbjct: 214 VLKRD------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 740 VDTGRTVVCTIHQPSI 755
+ + V+C H S+
Sbjct: 268 LAPTKYVICVEHDLSV 283
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 629
LNG++ + G L A++G G GK++L+ L + G++ I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 630 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689
QND ++ E++LF L P S + + +E+ L ++ +G
Sbjct: 78 ----QND------SLRENILFGCQLE-EPYYRSVIQACALLPDLEI--LPSGDRTEIGEK 124
Query: 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736
GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 16/218 (7%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETF 625
+L ++ +PG AL+G +G+GKTT++++L G + I I K+ +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI--KRSSL 427
Query: 626 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685
G Q+ I T+ E+L + E+ + D ++ + P
Sbjct: 428 RSSIGIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHL---PEGYET 483
Query: 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745
V LS QR+ L I +ANP I+ +DE TS +D + + + ++ G+T
Sbjct: 484 VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKT 542
Query: 746 VVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 783
+ H+ ++ + D + +++ G + +G+H
Sbjct: 543 SIIIAHR--LNTIKNADLIIVLRDG----EIVEMGKHD 574
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L +S + PG L+G +G+GK+TL+ G I I G T +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 629 SGYCEQNDIHSPFVTIYESL-LFSAWLR--LSPEVDSETRKMF--IDEV--MELVELNPL 681
F I + + +FS R L P ++++ DEV ++E P
Sbjct: 93 ---------RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741
+ V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA 203
Query: 742 TGRTVVC 748
++C
Sbjct: 204 DCTVILC 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 585 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFARISGYCEQ--------N 635
++G +G+GKTTL+ ++G +GNI I+G +K + R S + N
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVN 91
Query: 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSG 693
DI V +YE E+ R +F+ E+++ ++L LR+ L L +G
Sbjct: 92 DI----VYLYE------------ELKGLDRDLFL-EMLKALKLGEEILRRKLYKLS--AG 132
Query: 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ- 752
S R L +A + P I+ +DEP +DA ++ R ++ + G+ + H+
Sbjct: 133 QSVLVRTSLALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHEL 185
Query: 753 PSIDIFEAFDELFLM 767
+++++ + FL+
Sbjct: 186 DMLNLYKEYKAYFLV 200
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD- 598
S+ + SVD ++ V G E L G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 631 ESIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVND 687
Query: 599 ----VLAGRKTG 606
VLA R G
Sbjct: 688 ILAAVLANRLNG 699
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 694 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 750
LS + +R+ +A EL + + +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 751 HQPSIDIFEAFD 762
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 686 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGQEIYVG 777
G TV+ H ++D+ + D + + RGGQ + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 614 TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
T GY K+E+ A + G ++ + VT E+L F L L+ E +++ ++ + E+
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTAMSVT--EALAFFDGLELT-EKEAQIARLILREIR 482
Query: 674 ELVE-LNPLRQSLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 729
+ + L + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 730 AIVMRTVRNTVDTGRTVVCTIH 751
++ T+++ D G T++ H
Sbjct: 543 DRLIATLKSMRDLGNTLIVVEH 564
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 686 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGQEIYVG 777
G TV+ H ++D+ + D + + RGGQ + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 614 TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673
T GY K+E+ A + G ++ + VT E+L F L L+ E +++ ++ + E+
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLELT-EKEAQIARLILREIR 482
Query: 674 ELVE-LNPLRQSLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 729
+ + L + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 730 AIVMRTVRNTVDTGRTVVCTIH 751
++ T+++ D G T++ H
Sbjct: 543 DRLIATLKSXRDLGNTLIVVEH 564
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 686 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 743 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGQEIYVG 777
G TV+ H ++D+ + D + + RGGQ + VG
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 627
+LLN + + G +G GK+TLM +A N + G+P ++E
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA----------NGQVDGFPTQEECR-- 496
Query: 628 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 687
+ Y E + + T +F + + T++ D+++E ++
Sbjct: 497 -TVYVEHDIDGTHSDTSVLDFVFESGVG--------TKEAIKDKLIEF----GFTDEMIA 543
Query: 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
+P +S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 544 MP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 664 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723
TRK I+E ++ L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 724 LD 725
LD
Sbjct: 932 LD 933
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730
E + +V LNP L P LS ++R+ IA+ L+ +P ++ +DEPTS LD A
Sbjct: 135 EKLRMVRLNP-EAVLNSYP--LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQA 191
Query: 731 IVMR 734
+++
Sbjct: 192 HIIQ 195
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 663 ETRKMFIDEVMELVELNPLRQS-----LVGLPGVSGLSTEQRKRLTIAVELVANP---SI 714
E F DE L+ LR+ +G P LS + +R+ +A EL + ++
Sbjct: 696 EAHDFFADESAIFRALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGTV 754
Query: 715 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752
+DEPT+GL + R + VD G TV+ H+
Sbjct: 755 YVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 662 SETRKMFIDEVMELVELNP-LRQSL------------VGLPGVSGLSTEQRKRLTIAVEL 708
S+ M +DE +E + P ++++L +G P + LS + +R+ +A EL
Sbjct: 762 SDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATT-LSGGEAQRIKLASEL 820
Query: 709 VANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765
+ + +DEPT GL ++ + VD G TV+ H ++D+ + D +
Sbjct: 821 RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH--NLDVIKNADHII 878
Query: 766 -LMKRGGQE 773
L GG+E
Sbjct: 879 DLGPEGGKE 887
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 606
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 664 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723
TRK I+E + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 724 LD 725
LD
Sbjct: 932 LD 933
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 664 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723
TRK I+E + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 870 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 925
Query: 724 LD 725
LD
Sbjct: 926 LD 927
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 3 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 36
GDE+ + G+ K +TTGE++ G L FM EI
Sbjct: 117 GDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEI 150
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 606
+S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 8 RGISGGQKKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
RG+SGG++ ++ E+ G A F+DE + LD+ +I + L++ +N
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK- 336
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIV 90
VI + E + FD + ++ G +V
Sbjct: 337 --VIVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 8 RGISGGQKKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 61
RG+SGG++ ++ E+ G A F+DE + LD+ +I + L++ +N
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK- 336
Query: 62 TAVISLLQPAPETYDLFDDIILLSDGQIV 90
VI + E + FD + ++ G +V
Sbjct: 337 --VIVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE----LNPLRQS 684
S +C QN P TI E+++ ++ E R + + +L E
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSY--------DEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
++G G++ LS QR R+++A + + + +D P LD
Sbjct: 152 VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 628
+L ++ G L A+ G +GAGKT+L+ ++ G G I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 629 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE----LNPLRQS 684
S +C QN P TI E+++ ++ E R + + +L E
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSY--------DEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725
++G G++ LS QR R+++A + + + +D P LD
Sbjct: 152 VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 573 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRK 604
+ G F PGVLT + G +GKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,686,272
Number of Sequences: 62578
Number of extensions: 1202620
Number of successful extensions: 3814
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3525
Number of HSP's gapped (non-prelim): 245
length of query: 1140
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1031
effective length of database: 8,152,335
effective search space: 8405057385
effective search space used: 8405057385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)