Query 001146
Match_columns 1140
No_of_seqs 630 out of 4502
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 17:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 3E-185 7E-190 1665.6 78.6 1101 1-1140 252-1387(1391)
2 PLN03140 ABC transporter G fam 100.0 1E-178 3E-183 1731.1 118.3 1138 1-1140 328-1470(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 3E-160 6E-165 1569.6 116.4 1099 1-1138 201-1392(1394)
4 KOG0061 Transporter, ABC super 100.0 2.5E-97 5E-102 898.7 57.5 579 538-1140 22-612 (613)
5 TIGR00955 3a01204 The Eye Pigm 100.0 2.6E-96 6E-101 902.9 61.3 566 565-1140 36-617 (617)
6 PLN03211 ABC transporter G-25; 100.0 1.1E-95 2E-100 894.5 63.9 581 539-1137 37-659 (659)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.6E-93 3.4E-98 938.8 64.5 589 538-1137 26-695 (1394)
8 PLN03140 ABC transporter G fam 100.0 1.7E-92 3.6E-97 923.3 61.2 593 537-1137 127-790 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 3.5E-87 7.5E-92 811.9 41.9 564 565-1138 126-732 (1391)
10 KOG0055 Multidrug/pheromone ex 100.0 4.4E-77 9.6E-82 726.6 36.1 688 2-780 483-1209(1228)
11 KOG0061 Transporter, ABC super 100.0 2.6E-62 5.5E-67 593.4 40.7 442 1-461 162-608 (613)
12 PLN03211 ABC transporter G-25; 100.0 3.4E-60 7.3E-65 581.4 45.3 440 1-460 198-657 (659)
13 TIGR00955 3a01204 The Eye Pigm 100.0 5.3E-60 1.2E-64 581.4 46.2 447 1-460 157-612 (617)
14 PTZ00265 multidrug resistance 100.0 1.5E-58 3.3E-63 608.2 37.0 219 539-780 1163-1448(1466)
15 PLN03130 ABC transporter C fam 100.0 6.6E-55 1.4E-59 579.1 39.7 214 539-781 1235-1458(1622)
16 PLN03232 ABC transporter C fam 100.0 4.6E-55 9.9E-60 581.6 37.9 213 539-780 1232-1454(1495)
17 TIGR01257 rim_protein retinal- 100.0 1.2E-52 2.6E-57 548.1 58.9 223 541-790 1937-2161(2272)
18 TIGR00957 MRP_assoc_pro multi 100.0 8.3E-52 1.8E-56 551.2 40.9 213 539-780 1282-1504(1522)
19 COG1123 ATPase components of v 100.0 1.1E-51 2.5E-56 473.4 35.0 225 542-779 281-514 (539)
20 PTZ00243 ABC transporter; Prov 100.0 1.7E-51 3.6E-56 546.3 40.8 213 539-780 1306-1529(1560)
21 TIGR01271 CFTR_protein cystic 100.0 8.7E-48 1.9E-52 511.0 45.8 211 540-780 1216-1436(1490)
22 PRK15134 microcin C ABC transp 100.0 2.9E-48 6.2E-53 472.2 35.1 225 542-779 276-510 (529)
23 KOG0054 Multidrug resistance-a 100.0 7.2E-48 1.6E-52 483.0 38.5 214 538-780 1135-1358(1381)
24 PRK10261 glutathione transport 100.0 6.3E-48 1.4E-52 475.0 37.1 227 541-780 313-549 (623)
25 COG4172 ABC-type uncharacteriz 100.0 1.3E-47 2.9E-52 411.1 32.9 228 540-779 275-511 (534)
26 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-47 2.9E-52 465.8 36.2 217 542-779 280-512 (520)
27 PRK13549 xylose transporter AT 100.0 8E-48 1.7E-52 465.7 33.0 222 542-781 260-491 (506)
28 COG1126 GlnQ ABC-type polar am 100.0 2.4E-48 5.1E-53 388.3 22.9 215 542-780 3-221 (240)
29 PRK09700 D-allose transporter 100.0 1.3E-47 2.9E-52 464.7 31.0 214 542-779 266-493 (510)
30 PRK10762 D-ribose transporter 100.0 6.6E-47 1.4E-51 457.2 32.8 204 569-781 267-481 (501)
31 TIGR02633 xylG D-xylose ABC tr 100.0 7.4E-47 1.6E-51 457.4 32.9 221 542-780 258-488 (500)
32 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-46 4.8E-51 452.7 34.2 204 569-781 278-489 (510)
33 PRK11288 araG L-arabinose tran 100.0 2.2E-46 4.7E-51 452.7 31.2 205 569-782 268-483 (501)
34 PRK10938 putative molybdenum t 100.0 1.3E-45 2.7E-50 445.6 31.7 215 541-777 260-485 (490)
35 PRK10982 galactose/methyl gala 100.0 2.1E-45 4.5E-50 443.5 31.5 216 541-780 250-476 (491)
36 KOG0058 Peptide exporter, ABC 100.0 4.6E-45 1E-49 423.4 26.2 250 505-780 429-687 (716)
37 COG1135 AbcC ABC-type metal io 100.0 2.4E-45 5.1E-50 385.5 21.0 219 542-780 2-227 (339)
38 COG1127 Ttg2A ABC-type transpo 100.0 6.1E-45 1.3E-49 369.7 22.2 231 540-794 7-249 (263)
39 COG1125 OpuBA ABC-type proline 100.0 3E-45 6.5E-50 372.5 19.4 215 542-781 2-222 (309)
40 COG1116 TauB ABC-type nitrate/ 100.0 8.3E-45 1.8E-49 375.8 22.4 204 541-770 3-207 (248)
41 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.5E-44 7.7E-49 377.4 23.9 216 541-781 4-224 (254)
42 KOG0055 Multidrug/pheromone ex 100.0 5.4E-44 1.2E-48 437.2 27.7 266 489-781 296-573 (1228)
43 COG1120 FepC ABC-type cobalami 100.0 3.1E-44 6.8E-49 380.2 22.0 228 541-790 2-236 (258)
44 COG3638 ABC-type phosphate/pho 100.0 2.3E-44 5E-49 364.5 18.7 220 541-782 3-235 (258)
45 COG1131 CcmA ABC-type multidru 100.0 9.8E-44 2.1E-48 395.4 24.9 215 541-779 4-221 (293)
46 COG1136 SalX ABC-type antimicr 100.0 2E-43 4.3E-48 366.7 23.7 209 542-772 2-219 (226)
47 PRK15064 ABC transporter ATP-b 100.0 8.9E-43 1.9E-47 424.2 33.1 198 541-779 319-520 (530)
48 PRK11819 putative ABC transpor 100.0 6.5E-42 1.4E-46 417.7 39.8 201 541-778 324-527 (556)
49 COG4555 NatA ABC-type Na+ tran 100.0 4.6E-44 1E-48 351.5 15.5 215 542-780 2-218 (245)
50 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-41 4.9E-46 413.0 40.8 201 541-778 322-525 (552)
51 COG3839 MalK ABC-type sugar tr 100.0 3E-43 6.6E-48 387.0 21.7 216 541-781 3-220 (338)
52 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-43 3.6E-48 370.3 18.3 206 566-781 14-224 (345)
53 COG3842 PotA ABC-type spermidi 100.0 3.1E-43 6.6E-48 389.1 21.2 218 540-781 4-223 (352)
54 COG2884 FtsE Predicted ATPase 100.0 4.4E-43 9.5E-48 342.0 18.5 214 542-779 2-221 (223)
55 PRK13409 putative ATPase RIL; 100.0 2E-41 4.3E-46 410.8 35.1 211 541-793 340-554 (590)
56 TIGR01257 rim_protein retinal- 100.0 9.3E-38 2E-42 409.0 71.7 217 539-779 926-1144(2272)
57 COG1117 PstB ABC-type phosphat 100.0 1.2E-42 2.6E-47 345.1 18.2 219 540-780 6-233 (253)
58 PRK10636 putative ABC transpor 100.0 7.4E-41 1.6E-45 412.4 36.0 197 541-779 312-512 (638)
59 PRK11147 ABC transporter ATPas 100.0 2.2E-40 4.8E-45 409.5 38.0 201 541-778 319-522 (635)
60 PLN03073 ABC transporter F fam 100.0 4.6E-40 1E-44 405.4 38.6 200 541-779 508-709 (718)
61 PRK13537 nodulation ABC transp 100.0 4.7E-41 1E-45 378.0 25.9 216 540-780 6-223 (306)
62 COG1137 YhbG ABC-type (unclass 100.0 1.9E-42 4E-47 339.8 12.4 218 541-781 4-225 (243)
63 COG3840 ThiQ ABC-type thiamine 100.0 9.4E-42 2E-46 329.4 16.9 212 542-780 2-215 (231)
64 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-40 2.5E-45 377.1 26.3 218 542-780 2-226 (343)
65 PRK11650 ugpC glycerol-3-phosp 100.0 1E-40 2.2E-45 381.0 24.9 216 541-780 3-220 (356)
66 TIGR03265 PhnT2 putative 2-ami 100.0 1.5E-40 3.2E-45 379.3 25.1 215 541-780 4-220 (353)
67 COG1124 DppF ABC-type dipeptid 100.0 7.2E-41 1.6E-45 342.5 20.2 218 541-780 3-227 (252)
68 PRK11432 fbpC ferric transport 100.0 2.2E-40 4.8E-45 377.1 25.5 215 541-780 6-222 (351)
69 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-40 4.9E-45 378.0 25.1 216 540-780 4-224 (362)
70 cd03261 ABC_Org_Solvent_Resist 100.0 4.4E-40 9.6E-45 358.7 24.9 214 542-779 1-221 (235)
71 PRK13536 nodulation factor exp 100.0 5.3E-40 1.1E-44 372.8 25.6 215 541-780 41-257 (340)
72 COG1122 CbiO ABC-type cobalt t 100.0 2.4E-40 5.1E-45 351.9 20.9 215 541-779 3-223 (235)
73 PRK10851 sulfate/thiosulfate t 100.0 8.7E-40 1.9E-44 373.0 25.1 218 541-780 2-222 (353)
74 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-39 2.8E-44 349.6 24.1 211 542-777 1-213 (213)
75 PRK09452 potA putrescine/sperm 100.0 1.6E-39 3.5E-44 372.3 26.3 215 541-780 14-230 (375)
76 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-39 2.3E-44 351.0 23.5 208 542-772 2-215 (216)
77 COG2274 SunT ABC-type bacterio 100.0 9.2E-39 2E-43 388.2 34.0 222 534-781 464-693 (709)
78 PRK11607 potG putrescine trans 100.0 2.3E-39 4.9E-44 371.8 26.5 215 541-780 19-235 (377)
79 COG0410 LivF ABC-type branched 100.0 1.3E-39 2.8E-44 331.1 20.4 214 542-781 4-223 (237)
80 TIGR01288 nodI ATP-binding ABC 100.0 2.5E-39 5.5E-44 364.9 25.0 214 541-779 4-219 (303)
81 cd03265 ABC_DrrA DrrA is the A 100.0 3E-39 6.5E-44 348.4 24.4 213 542-779 1-216 (220)
82 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.1E-39 8.8E-44 347.4 25.5 216 542-779 1-218 (220)
83 PRK11000 maltose/maltodextrin 100.0 2.5E-39 5.3E-44 372.4 25.1 215 541-780 3-219 (369)
84 cd03269 ABC_putative_ATPase Th 100.0 3.9E-39 8.5E-44 345.1 24.3 210 542-777 1-210 (210)
85 TIGR01186 proV glycine betaine 100.0 2.1E-39 4.5E-44 368.6 23.1 204 565-780 4-215 (363)
86 PRK11153 metN DL-methionine tr 100.0 4.8E-39 1E-43 367.3 26.0 218 542-780 2-226 (343)
87 cd03301 ABC_MalK_N The N-termi 100.0 5.1E-39 1.1E-43 345.2 24.6 211 542-777 1-213 (213)
88 TIGR01188 drrA daunorubicin re 100.0 3.1E-39 6.7E-44 364.0 23.4 202 566-779 5-208 (302)
89 cd03219 ABC_Mj1267_LivG_branch 100.0 6.4E-39 1.4E-43 350.1 24.8 216 542-779 1-227 (236)
90 cd03296 ABC_CysA_sulfate_impor 100.0 9E-39 2E-43 349.1 26.0 217 541-779 2-221 (239)
91 PRK09536 btuD corrinoid ABC tr 100.0 3.6E-39 7.8E-44 371.0 23.6 218 541-781 3-225 (402)
92 COG0411 LivG ABC-type branched 100.0 1.3E-39 2.8E-44 333.7 17.6 208 565-781 15-236 (250)
93 cd03234 ABCG_White The White s 100.0 1.1E-38 2.4E-43 345.4 25.9 221 542-777 4-226 (226)
94 cd03266 ABC_NatA_sodium_export 100.0 6.5E-39 1.4E-43 345.6 23.6 215 542-777 2-218 (218)
95 cd03218 ABC_YhbG The ABC trans 100.0 9.3E-39 2E-43 347.9 24.8 214 542-780 1-218 (232)
96 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-38 2.3E-43 359.1 25.8 214 541-780 2-217 (301)
97 cd03260 ABC_PstB_phosphate_tra 100.0 7.3E-39 1.6E-43 347.3 23.4 215 542-780 1-225 (227)
98 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7E-39 1.5E-43 345.3 22.8 209 542-772 1-217 (218)
99 COG4152 ABC-type uncharacteriz 100.0 3.1E-39 6.6E-44 326.5 18.3 213 541-779 2-214 (300)
100 cd03268 ABC_BcrA_bacitracin_re 100.0 9.4E-39 2E-43 341.6 23.1 207 542-777 1-208 (208)
101 cd03256 ABC_PhnC_transporter A 100.0 7.6E-39 1.6E-43 350.8 22.4 218 542-780 1-230 (241)
102 cd03263 ABC_subfamily_A The AB 100.0 1E-38 2.3E-43 344.5 23.1 215 542-780 1-217 (220)
103 COG4525 TauB ABC-type taurine 100.0 7.4E-39 1.6E-43 312.4 19.3 215 542-780 4-220 (259)
104 cd03294 ABC_Pro_Gly_Bertaine T 100.0 8E-39 1.7E-43 354.8 22.3 204 565-780 35-246 (269)
105 cd03258 ABC_MetN_methionine_tr 100.0 1.5E-38 3.2E-43 346.4 23.9 217 542-779 2-225 (233)
106 PRK13637 cbiO cobalt transport 100.0 1.9E-38 4.2E-43 354.5 24.6 220 541-780 2-230 (287)
107 TIGR02673 FtsE cell division A 100.0 1.8E-38 3.8E-43 341.2 23.4 205 542-769 2-212 (214)
108 cd03292 ABC_FtsE_transporter F 100.0 1.5E-38 3.3E-43 341.9 22.8 207 542-772 1-213 (214)
109 cd03226 ABC_cobalt_CbiO_domain 100.0 9.1E-39 2E-43 340.7 20.8 203 544-774 2-205 (205)
110 PRK09493 glnQ glutamine ABC tr 100.0 3.1E-38 6.6E-43 345.3 25.4 215 542-780 2-221 (240)
111 COG4559 ABC-type hemin transpo 100.0 1.2E-38 2.6E-43 315.8 19.9 226 542-790 2-238 (259)
112 PRK11629 lolD lipoprotein tran 100.0 4.9E-38 1.1E-42 341.9 26.5 217 541-779 5-229 (233)
113 PRK13647 cbiO cobalt transport 100.0 2.4E-38 5.1E-43 351.7 24.5 215 541-779 4-222 (274)
114 TIGR02315 ABC_phnC phosphonate 100.0 1.1E-38 2.4E-43 349.9 21.3 218 542-780 2-231 (243)
115 PRK11248 tauB taurine transpor 100.0 4.9E-38 1.1E-42 345.4 26.1 212 542-779 2-215 (255)
116 PRK13651 cobalt transporter AT 100.0 2.3E-38 5E-43 355.2 23.9 219 542-780 3-250 (305)
117 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.8E-38 6.1E-43 345.9 23.9 214 542-779 1-220 (242)
118 cd03224 ABC_TM1139_LivF_branch 100.0 2.3E-38 4.9E-43 342.5 22.8 211 542-779 1-216 (222)
119 PRK11264 putative amino-acid A 100.0 4.3E-38 9.3E-43 346.6 25.3 214 542-779 4-228 (250)
120 PRK11831 putative ABC transpor 100.0 3.5E-38 7.7E-43 349.9 24.7 216 541-780 7-229 (269)
121 COG4988 CydD ABC-type transpor 100.0 1.6E-38 3.4E-43 363.0 22.3 215 538-781 317-540 (559)
122 KOG0057 Mitochondrial Fe/S clu 100.0 4.9E-39 1.1E-43 360.1 17.8 215 537-781 347-571 (591)
123 PRK13643 cbiO cobalt transport 100.0 2.8E-38 6.1E-43 353.4 23.7 218 542-780 2-229 (288)
124 PRK15079 oligopeptide ABC tran 100.0 5.3E-38 1.1E-42 355.6 25.9 230 541-780 8-247 (331)
125 cd03264 ABC_drug_resistance_li 100.0 3.5E-38 7.6E-43 338.0 23.2 209 542-777 1-211 (211)
126 PRK10908 cell division protein 100.0 5E-38 1.1E-42 339.4 24.6 209 542-774 2-216 (222)
127 PRK13634 cbiO cobalt transport 100.0 4.7E-38 1E-42 351.9 24.5 218 542-780 3-231 (290)
128 PRK10895 lipopolysaccharide AB 100.0 3.9E-38 8.5E-43 344.7 23.2 216 541-780 3-222 (241)
129 PRK13631 cbiO cobalt transport 100.0 4.7E-38 1E-42 354.8 24.4 219 541-780 21-261 (320)
130 TIGR00972 3a0107s01c2 phosphat 100.0 7.3E-38 1.6E-42 343.8 24.8 214 542-779 2-227 (247)
131 cd03262 ABC_HisP_GlnQ_permease 100.0 4.4E-38 9.6E-43 338.0 22.6 207 542-772 1-212 (213)
132 PRK13650 cbiO cobalt transport 100.0 4.6E-38 9.9E-43 350.4 23.3 217 541-780 4-225 (279)
133 COG4175 ProV ABC-type proline/ 100.0 1.8E-38 3.9E-43 332.2 18.7 230 540-781 3-251 (386)
134 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-37 2.6E-42 339.6 26.1 212 542-779 2-216 (236)
135 cd03257 ABC_NikE_OppD_transpor 100.0 6.9E-38 1.5E-42 340.3 24.0 217 542-777 2-228 (228)
136 PRK10619 histidine/lysine/argi 100.0 9.7E-38 2.1E-42 344.7 25.3 214 541-779 5-236 (257)
137 PRK11247 ssuB aliphatic sulfon 100.0 7.9E-38 1.7E-42 342.9 24.0 206 541-779 12-218 (257)
138 PRK13646 cbiO cobalt transport 100.0 7.1E-38 1.5E-42 350.1 24.0 219 541-780 2-231 (286)
139 PRK13636 cbiO cobalt transport 100.0 9.8E-38 2.1E-42 348.4 24.8 216 541-780 5-227 (283)
140 TIGR02211 LolD_lipo_ex lipopro 100.0 1E-37 2.2E-42 337.1 24.1 211 542-774 2-220 (221)
141 PRK11124 artP arginine transpo 100.0 1.1E-37 2.4E-42 341.4 24.3 215 541-780 2-226 (242)
142 PRK10070 glycine betaine trans 100.0 7.8E-38 1.7E-42 359.7 24.1 204 565-780 39-250 (400)
143 cd03225 ABC_cobalt_CbiO_domain 100.0 6.9E-38 1.5E-42 335.8 21.6 204 544-769 2-209 (211)
144 cd03235 ABC_Metallic_Cations A 100.0 5.3E-38 1.1E-42 337.1 20.7 209 544-777 2-213 (213)
145 PRK13641 cbiO cobalt transport 100.0 1.4E-37 3.1E-42 347.8 25.0 220 541-780 2-230 (287)
146 PRK11614 livF leucine/isoleuci 100.0 1.2E-37 2.5E-42 340.1 23.5 213 541-780 5-222 (237)
147 PRK13644 cbiO cobalt transport 100.0 1.1E-37 2.5E-42 346.2 23.8 214 542-780 2-220 (274)
148 PRK13652 cbiO cobalt transport 100.0 1.2E-37 2.7E-42 346.8 24.2 215 542-780 4-223 (277)
149 PRK11300 livG leucine/isoleuci 100.0 1.7E-37 3.7E-42 342.8 25.1 218 541-780 5-239 (255)
150 TIGR03740 galliderm_ABC gallid 100.0 2.4E-37 5.3E-42 334.3 25.2 210 542-781 1-210 (223)
151 COG4987 CydC ABC-type transpor 100.0 2E-38 4.4E-43 355.1 17.1 212 541-780 336-557 (573)
152 PRK13548 hmuV hemin importer A 100.0 1.7E-37 3.6E-42 342.3 24.1 214 542-780 3-226 (258)
153 TIGR01978 sufC FeS assembly AT 100.0 2.3E-37 4.9E-42 339.6 25.0 219 542-779 1-229 (243)
154 PRK14247 phosphate ABC transpo 100.0 3.2E-37 6.9E-42 339.5 26.2 218 541-780 3-230 (250)
155 PRK14268 phosphate ABC transpo 100.0 2.7E-37 5.8E-42 341.1 25.7 214 541-779 12-237 (258)
156 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-37 3.1E-42 354.9 24.2 204 565-780 35-250 (382)
157 TIGR03005 ectoine_ehuA ectoine 100.0 2.2E-37 4.9E-42 340.9 24.9 214 542-779 1-231 (252)
158 PRK14273 phosphate ABC transpo 100.0 3.1E-37 6.7E-42 340.3 25.9 216 540-779 6-233 (254)
159 PRK13635 cbiO cobalt transport 100.0 1.8E-37 3.9E-42 345.2 23.7 216 541-780 5-225 (279)
160 PRK14267 phosphate ABC transpo 100.0 3.6E-37 7.8E-42 339.7 25.7 218 541-780 4-233 (253)
161 cd03233 ABC_PDR_domain1 The pl 100.0 2.9E-37 6.2E-42 327.4 24.0 196 541-777 3-202 (202)
162 PRK11231 fecE iron-dicitrate t 100.0 1.8E-37 3.9E-42 342.1 23.1 216 542-780 3-223 (255)
163 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-37 4.6E-42 331.9 22.8 209 542-777 1-211 (211)
164 PRK11022 dppD dipeptide transp 100.0 4.8E-37 1E-41 347.9 26.7 224 542-780 4-239 (326)
165 PRK13638 cbiO cobalt transport 100.0 2.8E-37 6E-42 343.4 24.3 214 542-780 2-221 (271)
166 PRK09984 phosphonate/organopho 100.0 2.7E-37 5.8E-42 342.2 24.0 220 541-780 4-238 (262)
167 COG4181 Predicted ABC-type tra 100.0 8.3E-38 1.8E-42 298.6 16.9 212 542-775 7-226 (228)
168 TIGR03410 urea_trans_UrtE urea 100.0 2.7E-37 5.8E-42 335.8 23.4 212 542-781 1-218 (230)
169 TIGR02769 nickel_nikE nickel i 100.0 4.5E-37 9.7E-42 340.5 25.2 224 542-780 3-236 (265)
170 PRK11308 dppF dipeptide transp 100.0 4.9E-37 1.1E-41 347.6 25.9 226 541-780 5-240 (327)
171 TIGR03411 urea_trans_UrtD urea 100.0 4.7E-37 1E-41 336.6 25.1 216 542-780 3-227 (242)
172 PRK10575 iron-hydroxamate tran 100.0 2.4E-37 5.3E-42 342.6 22.9 218 541-780 11-233 (265)
173 COG0444 DppD ABC-type dipeptid 100.0 3.9E-37 8.5E-42 329.9 23.6 225 542-780 2-239 (316)
174 PRK14245 phosphate ABC transpo 100.0 5.9E-37 1.3E-41 337.2 25.4 219 541-779 3-229 (250)
175 PRK09473 oppD oligopeptide tra 100.0 5.8E-37 1.3E-41 347.4 26.0 225 541-780 12-247 (330)
176 PRK14241 phosphate transporter 100.0 7.5E-37 1.6E-41 337.8 26.2 217 541-779 4-237 (258)
177 cd03232 ABC_PDR_domain2 The pl 100.0 4.7E-37 1E-41 323.3 23.4 190 541-777 3-192 (192)
178 PRK14242 phosphate transporter 100.0 6.1E-37 1.3E-41 337.9 25.4 221 539-779 4-232 (253)
179 PRK13639 cbiO cobalt transport 100.0 5.1E-37 1.1E-41 341.5 24.9 215 542-780 2-222 (275)
180 PRK10744 pstB phosphate transp 100.0 7E-37 1.5E-41 338.3 25.8 218 538-779 10-239 (260)
181 PRK13649 cbiO cobalt transport 100.0 5.3E-37 1.1E-41 343.0 25.1 219 541-780 2-230 (280)
182 PRK11174 cysteine/glutathione 100.0 2E-37 4.2E-42 383.4 23.5 211 540-780 348-568 (588)
183 TIGR03873 F420-0_ABC_ATP propo 100.0 3.3E-37 7.1E-42 340.3 22.7 217 542-780 2-222 (256)
184 PRK10584 putative ABC transpor 100.0 7.3E-37 1.6E-41 331.9 25.1 213 541-775 6-226 (228)
185 cd03267 ABC_NatA_like Similar 100.0 4.4E-37 9.5E-42 334.5 23.3 201 565-777 32-236 (236)
186 PRK14256 phosphate ABC transpo 100.0 1.2E-36 2.7E-41 335.0 27.0 222 540-780 3-232 (252)
187 PRK13632 cbiO cobalt transport 100.0 6.1E-37 1.3E-41 340.4 24.7 216 541-780 7-227 (271)
188 PRK10253 iron-enterobactin tra 100.0 5.1E-37 1.1E-41 340.1 23.6 218 540-780 6-229 (265)
189 PRK13549 xylose transporter AT 100.0 5.2E-37 1.1E-41 371.5 25.8 221 541-781 5-229 (506)
190 TIGR01277 thiQ thiamine ABC tr 100.0 6.9E-37 1.5E-41 328.2 23.7 210 542-778 1-212 (213)
191 PRK15093 antimicrobial peptide 100.0 1.1E-36 2.3E-41 346.4 26.4 226 542-780 4-244 (330)
192 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-36 2.3E-41 331.0 25.1 213 542-779 1-215 (232)
193 PRK14235 phosphate transporter 100.0 1.3E-36 2.9E-41 336.9 26.3 221 540-779 18-246 (267)
194 PRK13640 cbiO cobalt transport 100.0 5.8E-37 1.3E-41 342.0 23.3 218 541-780 5-228 (282)
195 COG1132 MdlB ABC-type multidru 100.0 8.5E-38 1.8E-42 384.3 18.1 216 538-780 325-548 (567)
196 PRK13633 cobalt transporter AT 100.0 5.6E-37 1.2E-41 342.1 22.8 220 541-780 4-229 (280)
197 PRK13648 cbiO cobalt transport 100.0 9.3E-37 2E-41 338.8 24.5 216 541-780 7-227 (269)
198 PRK13645 cbiO cobalt transport 100.0 9.1E-37 2E-41 342.3 24.4 220 540-779 5-235 (289)
199 PRK14237 phosphate transporter 100.0 1.9E-36 4.1E-41 335.7 26.6 222 538-779 17-246 (267)
200 PRK14269 phosphate ABC transpo 100.0 1.3E-36 2.7E-41 333.5 24.9 219 542-779 3-225 (246)
201 PRK13547 hmuV hemin importer A 100.0 8.3E-37 1.8E-41 337.7 23.6 218 542-780 2-240 (272)
202 cd03213 ABCG_EPDR ABCG transpo 100.0 1.4E-36 3E-41 320.0 24.1 190 541-777 3-194 (194)
203 TIGR00968 3a0106s01 sulfate AB 100.0 1.4E-36 3E-41 331.1 24.8 214 542-780 1-216 (237)
204 PRK14250 phosphate ABC transpo 100.0 8.2E-37 1.8E-41 333.7 23.0 209 541-779 3-216 (241)
205 PRK14259 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 336.4 24.9 216 540-780 12-249 (269)
206 PRK10771 thiQ thiamine transpo 100.0 1.1E-36 2.5E-41 331.0 23.3 212 542-780 2-215 (232)
207 TIGR01184 ntrCD nitrate transp 100.0 7.5E-37 1.6E-41 331.3 21.7 198 570-779 1-199 (230)
208 PRK11144 modC molybdate transp 100.0 9.7E-37 2.1E-41 349.5 23.5 191 572-780 16-214 (352)
209 PRK14274 phosphate ABC transpo 100.0 1.8E-36 3.8E-41 335.1 24.5 220 541-780 12-239 (259)
210 TIGR02142 modC_ABC molybdenum 100.0 1.1E-36 2.4E-41 349.8 23.7 195 572-780 15-217 (354)
211 PRK14270 phosphate ABC transpo 100.0 2.2E-36 4.7E-41 332.9 24.9 216 541-780 4-231 (251)
212 TIGR03608 L_ocin_972_ABC putat 100.0 1.3E-36 2.7E-41 324.9 22.3 189 567-767 11-206 (206)
213 cd03299 ABC_ModC_like Archeal 100.0 2.2E-36 4.7E-41 329.1 24.4 213 542-780 1-215 (235)
214 cd03297 ABC_ModC_molybdenum_tr 100.0 1.9E-36 4.2E-41 325.1 23.4 191 572-777 16-214 (214)
215 PRK14240 phosphate transporter 100.0 3.6E-36 7.9E-41 331.1 26.2 215 541-779 3-229 (250)
216 TIGR01193 bacteriocin_ABC ABC- 100.0 3.6E-36 7.7E-41 379.2 29.8 213 539-780 471-693 (708)
217 PRK14239 phosphate transporter 100.0 3.2E-36 6.9E-41 332.1 25.6 220 541-780 5-232 (252)
218 PRK13642 cbiO cobalt transport 100.0 1.6E-36 3.5E-41 337.9 23.3 217 541-780 4-225 (277)
219 PRK14260 phosphate ABC transpo 100.0 2.6E-36 5.7E-41 333.5 24.7 217 541-780 7-239 (259)
220 PRK15112 antimicrobial peptide 100.0 2E-36 4.4E-41 335.5 23.8 224 541-779 4-234 (267)
221 PRK14257 phosphate ABC transpo 100.0 3.7E-36 8.1E-41 340.3 26.3 222 540-780 79-309 (329)
222 PRK14244 phosphate ABC transpo 100.0 3.6E-36 7.9E-41 331.1 25.0 220 541-779 5-232 (251)
223 TIGR03375 type_I_sec_LssB type 100.0 1.3E-35 2.8E-40 373.3 33.2 214 539-780 461-684 (694)
224 PRK14272 phosphate ABC transpo 100.0 4.3E-36 9.3E-41 331.1 25.3 217 541-780 4-232 (252)
225 PRK11160 cysteine/glutathione 100.0 8.7E-37 1.9E-41 374.5 21.9 214 539-780 336-558 (574)
226 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-36 2.9E-41 381.7 24.1 211 539-780 449-669 (686)
227 PRK14253 phosphate ABC transpo 100.0 4.2E-36 9E-41 330.4 25.0 219 541-779 3-228 (249)
228 PRK14258 phosphate ABC transpo 100.0 4.3E-36 9.4E-41 331.9 25.1 222 541-780 7-241 (261)
229 COG4598 HisP ABC-type histidin 100.0 2.3E-37 5E-42 297.4 12.8 216 541-780 6-237 (256)
230 KOG0056 Heavy metal exporter H 100.0 8E-38 1.7E-42 340.9 10.9 219 536-779 532-756 (790)
231 PRK14262 phosphate ABC transpo 100.0 5.4E-36 1.2E-40 329.7 25.6 220 541-780 3-230 (250)
232 PRK14236 phosphate transporter 100.0 5.6E-36 1.2E-40 332.9 25.9 221 540-780 24-252 (272)
233 COG4604 CeuD ABC-type enteroch 100.0 1.1E-37 2.4E-42 305.0 10.7 217 542-781 2-222 (252)
234 PRK10762 D-ribose transporter 100.0 2.9E-36 6.3E-41 364.5 25.5 218 542-781 5-227 (501)
235 TIGR02982 heterocyst_DevA ABC 100.0 4.1E-36 9E-41 323.8 23.6 211 542-773 2-219 (220)
236 PRK11701 phnK phosphonate C-P 100.0 4.1E-36 8.8E-41 331.9 24.1 215 541-779 6-236 (258)
237 PRK11176 lipid transporter ATP 100.0 1.9E-36 4.2E-41 374.4 23.5 215 539-780 339-563 (582)
238 TIGR00958 3a01208 Conjugate Tr 100.0 8.7E-37 1.9E-41 382.7 20.6 213 539-780 476-698 (711)
239 PRK09700 D-allose transporter 100.0 3.2E-36 6.8E-41 365.4 24.6 219 541-781 5-231 (510)
240 PRK14249 phosphate ABC transpo 100.0 9.4E-36 2E-40 327.8 25.8 220 541-780 4-231 (251)
241 PRK14271 phosphate ABC transpo 100.0 9.9E-36 2.1E-40 330.8 25.9 220 541-780 21-247 (276)
242 PRK14275 phosphate ABC transpo 100.0 9.3E-36 2E-40 332.7 25.6 216 540-779 38-265 (286)
243 PRK14251 phosphate ABC transpo 100.0 1E-35 2.2E-40 327.7 25.4 215 541-779 4-230 (251)
244 PRK10418 nikD nickel transport 100.0 7.2E-36 1.6E-40 329.0 24.2 214 540-779 3-225 (254)
245 PRK10419 nikE nickel transport 100.0 8.2E-36 1.8E-40 330.5 24.7 225 542-781 4-238 (268)
246 PRK13543 cytochrome c biogenes 100.0 7.9E-36 1.7E-40 319.8 23.7 201 541-768 11-211 (214)
247 PRK14261 phosphate ABC transpo 100.0 1.1E-35 2.4E-40 327.7 25.3 219 541-779 6-232 (253)
248 PRK14254 phosphate ABC transpo 100.0 2E-35 4.4E-40 329.6 27.4 214 540-779 38-264 (285)
249 TIGR02770 nickel_nikD nickel i 100.0 5.2E-36 1.1E-40 325.2 22.1 201 569-779 1-210 (230)
250 PRK14248 phosphate ABC transpo 100.0 1.2E-35 2.6E-40 329.9 25.5 215 541-779 21-247 (268)
251 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8E-36 1.7E-40 321.7 23.3 192 565-777 33-224 (224)
252 PRK15056 manganese/iron transp 100.0 6.6E-36 1.4E-40 332.3 23.2 219 541-781 6-227 (272)
253 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-36 3.9E-41 330.9 18.1 210 542-779 1-220 (237)
254 COG4161 ArtP ABC-type arginine 100.0 2.8E-36 6E-41 284.7 16.8 216 541-780 2-226 (242)
255 PRK10790 putative multidrug tr 100.0 4.6E-36 9.9E-41 371.2 23.9 212 539-780 338-559 (592)
256 PRK14265 phosphate ABC transpo 100.0 1.5E-35 3.2E-40 329.3 25.4 216 540-780 19-254 (274)
257 TIGR02633 xylG D-xylose ABC tr 100.0 9.8E-36 2.1E-40 360.5 26.2 220 542-781 2-227 (500)
258 PRK14255 phosphate ABC transpo 100.0 1.8E-35 3.8E-40 326.1 25.8 219 541-779 5-231 (252)
259 PRK13538 cytochrome c biogenes 100.0 8.5E-36 1.8E-40 317.3 22.3 199 542-767 2-202 (204)
260 PRK15439 autoinducer 2 ABC tra 100.0 7.7E-36 1.7E-40 361.0 24.8 212 541-781 11-226 (510)
261 PRK10247 putative ABC transpor 100.0 6.5E-36 1.4E-40 323.1 21.3 210 541-778 7-221 (225)
262 cd03231 ABC_CcmA_heme_exporter 100.0 8.1E-36 1.8E-40 316.5 21.5 196 542-767 1-198 (201)
263 CHL00131 ycf16 sulfate ABC tra 100.0 2.9E-35 6.3E-40 324.5 26.7 221 541-780 7-237 (252)
264 TIGR01846 type_I_sec_HlyB type 100.0 1.3E-35 2.8E-40 372.9 27.1 214 539-780 453-676 (694)
265 PRK14263 phosphate ABC transpo 100.0 2.9E-35 6.3E-40 324.6 26.6 220 539-779 6-240 (261)
266 COG1123 ATPase components of v 100.0 1.1E-35 2.5E-40 341.7 24.1 224 541-780 5-240 (539)
267 PRK14238 phosphate transporter 100.0 1.8E-35 3.9E-40 328.4 24.8 215 541-779 24-250 (271)
268 PRK14243 phosphate transporter 100.0 1.4E-35 3.1E-40 328.1 23.6 218 541-779 10-243 (264)
269 COG4618 ArpD ABC-type protease 100.0 1.9E-36 4.1E-41 335.7 16.6 226 530-780 323-556 (580)
270 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.7E-36 1E-40 378.5 22.0 212 539-780 475-696 (710)
271 cd03230 ABC_DR_subfamily_A Thi 100.0 9.8E-36 2.1E-40 307.9 20.4 170 542-772 1-172 (173)
272 PRK11288 araG L-arabinose tran 100.0 1.6E-35 3.5E-40 358.0 25.3 217 541-779 4-224 (501)
273 PRK14246 phosphate ABC transpo 100.0 2.8E-35 6E-40 324.0 24.7 220 541-780 10-237 (257)
274 cd03245 ABCC_bacteriocin_expor 100.0 6.9E-36 1.5E-40 322.6 19.6 210 541-777 2-220 (220)
275 PRK13546 teichoic acids export 100.0 5E-35 1.1E-39 321.7 26.5 219 540-780 3-228 (264)
276 TIGR02323 CP_lyasePhnK phospho 100.0 2.5E-35 5.4E-40 325.0 23.9 215 541-779 3-233 (253)
277 PRK10982 galactose/methyl gala 100.0 1.6E-35 3.4E-40 357.6 23.9 215 545-781 2-220 (491)
278 cd03251 ABCC_MsbA MsbA is an e 100.0 5.7E-36 1.2E-40 326.4 18.1 210 542-779 1-220 (234)
279 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-35 2.9E-40 327.2 20.8 211 541-781 2-222 (275)
280 PRK09580 sufC cysteine desulfu 100.0 5.1E-35 1.1E-39 321.9 25.2 220 542-780 2-231 (248)
281 PRK14266 phosphate ABC transpo 100.0 4.5E-35 9.8E-40 322.4 24.8 220 541-780 3-230 (250)
282 cd03254 ABCC_Glucan_exporter_l 100.0 7.3E-36 1.6E-40 324.4 18.3 210 541-779 2-221 (229)
283 COG1129 MglA ABC-type sugar tr 100.0 2.6E-35 5.6E-40 336.7 23.5 228 541-790 8-242 (500)
284 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.2E-36 1.6E-40 326.4 18.1 211 542-779 1-221 (238)
285 PRK13539 cytochrome c biogenes 100.0 2.9E-35 6.3E-40 313.8 21.7 197 542-768 3-199 (207)
286 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-35 2.7E-40 363.0 21.2 217 539-780 314-538 (544)
287 PRK14252 phosphate ABC transpo 100.0 9.4E-35 2E-39 322.2 26.1 221 539-779 14-244 (265)
288 COG1129 MglA ABC-type sugar tr 100.0 3.4E-34 7.3E-39 327.6 31.2 203 570-780 275-486 (500)
289 PRK03695 vitamin B12-transport 100.0 4E-35 8.6E-40 321.4 22.6 198 569-780 11-218 (248)
290 TIGR01189 ccmA heme ABC export 100.0 3.8E-35 8.2E-40 310.9 21.3 195 542-766 1-197 (198)
291 TIGR01166 cbiO cobalt transpor 100.0 2.8E-35 6E-40 309.9 20.1 179 566-754 4-188 (190)
292 cd03229 ABC_Class3 This class 100.0 2.6E-35 5.7E-40 306.2 19.3 170 542-769 1-176 (178)
293 TIGR02324 CP_lyasePhnL phospho 100.0 6.4E-35 1.4E-39 315.8 23.0 210 542-768 2-223 (224)
294 TIGR03269 met_CoM_red_A2 methy 100.0 7E-35 1.5E-39 354.5 25.2 216 542-780 1-254 (520)
295 PRK14264 phosphate ABC transpo 100.0 1.6E-34 3.4E-39 325.7 26.0 223 540-780 44-285 (305)
296 cd03215 ABC_Carb_Monos_II This 100.0 3.7E-35 8E-40 306.3 19.4 171 541-772 4-181 (182)
297 PTZ00265 multidrug resistance 100.0 1.6E-34 3.4E-39 381.3 30.0 215 540-770 381-655 (1466)
298 TIGR02868 CydC thiol reductant 100.0 2.7E-35 5.9E-40 359.7 20.9 189 539-753 332-529 (529)
299 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.7E-35 2.1E-39 307.8 22.3 184 542-779 1-189 (200)
300 PRK13657 cyclic beta-1,2-gluca 100.0 5.8E-35 1.3E-39 360.8 23.9 211 540-779 333-553 (588)
301 cd03244 ABCC_MRP_domain2 Domai 100.0 4.1E-35 8.9E-40 316.8 19.7 209 541-778 2-220 (221)
302 PRK13545 tagH teichoic acids e 100.0 1.4E-34 3E-39 334.2 25.2 209 541-781 21-229 (549)
303 cd03253 ABCC_ATM1_transporter 100.0 3E-35 6.5E-40 321.2 18.4 209 542-779 1-219 (236)
304 PRK10261 glutathione transport 100.0 7.2E-35 1.6E-39 359.3 23.8 220 541-780 12-254 (623)
305 cd03246 ABCC_Protease_Secretio 100.0 3.7E-35 7.9E-40 303.7 17.8 169 542-772 1-172 (173)
306 PRK09544 znuC high-affinity zi 100.0 9.9E-35 2.1E-39 317.9 22.0 199 541-780 4-205 (251)
307 TIGR02203 MsbA_lipidA lipid A 100.0 6.9E-35 1.5E-39 360.2 23.4 215 539-780 328-552 (571)
308 PRK13540 cytochrome c biogenes 100.0 9.8E-35 2.1E-39 308.1 21.2 194 542-765 2-197 (200)
309 PRK15134 microcin C ABC transp 100.0 1.4E-34 3E-39 352.3 25.5 222 541-780 5-242 (529)
310 cd03248 ABCC_TAP TAP, the Tran 100.0 2.4E-35 5.2E-40 319.6 16.8 211 540-772 10-225 (226)
311 COG4148 ModC ABC-type molybdat 100.0 8.3E-36 1.8E-40 306.9 12.2 191 572-780 16-214 (352)
312 PRK00635 excinuclease ABC subu 100.0 8.2E-34 1.8E-38 366.2 33.3 136 638-781 759-903 (1809)
313 cd03247 ABCC_cytochrome_bd The 100.0 7E-35 1.5E-39 303.2 18.7 176 542-777 1-178 (178)
314 PRK10789 putative multidrug tr 100.0 1.2E-34 2.6E-39 355.6 23.1 214 539-780 311-534 (569)
315 COG0396 sufC Cysteine desulfur 100.0 7.9E-34 1.7E-38 286.9 24.5 230 541-794 3-239 (251)
316 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-34 4.8E-39 310.5 21.1 195 575-781 1-198 (223)
317 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.8E-34 6.1E-39 306.7 21.6 200 540-779 5-207 (207)
318 TIGR01192 chvA glucan exporter 100.0 2.6E-34 5.7E-39 353.0 24.2 212 540-780 333-554 (585)
319 cd03288 ABCC_SUR2 The SUR doma 100.0 9.4E-35 2E-39 320.5 17.4 213 539-780 17-239 (257)
320 TIGR02857 CydD thiol reductant 100.0 7.5E-35 1.6E-39 355.8 18.2 201 540-767 319-529 (529)
321 cd03214 ABC_Iron-Siderophores_ 100.0 1.3E-34 2.8E-39 301.6 17.0 176 543-777 1-180 (180)
322 COG4619 ABC-type uncharacteriz 100.0 4.1E-35 8.9E-40 279.3 11.9 194 565-772 14-211 (223)
323 COG0488 Uup ATPase components 100.0 3.9E-33 8.4E-38 328.7 31.3 199 539-778 319-519 (530)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 4E-34 8.7E-39 293.2 20.0 165 542-772 1-165 (166)
325 COG3845 ABC-type uncharacteriz 100.0 4.2E-34 9E-39 318.7 21.2 251 541-813 4-261 (501)
326 PRK10938 putative molybdenum t 100.0 3.5E-34 7.5E-39 346.1 21.2 206 542-780 4-220 (490)
327 PRK00349 uvrA excinuclease ABC 100.0 2.6E-33 5.7E-38 349.3 29.5 123 642-780 792-923 (943)
328 TIGR02204 MsbA_rel ABC transpo 100.0 3.4E-34 7.4E-39 354.2 21.3 214 540-780 336-559 (576)
329 cd03216 ABC_Carb_Monos_I This 100.0 7.9E-34 1.7E-38 290.1 19.9 158 542-775 1-162 (163)
330 COG1119 ModF ABC-type molybden 100.0 3.2E-34 7E-39 293.7 16.5 217 539-778 29-256 (257)
331 PRK10522 multidrug transporter 100.0 1.2E-33 2.7E-38 345.3 23.9 208 540-778 321-532 (547)
332 PRK13541 cytochrome c biogenes 100.0 1.6E-33 3.5E-38 297.6 21.2 191 542-764 2-192 (195)
333 TIGR01187 potA spermidine/putr 100.0 1E-33 2.3E-38 321.2 19.7 184 585-780 1-186 (325)
334 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-33 2.3E-38 292.2 17.8 166 542-769 1-169 (171)
335 cd03250 ABCC_MRP_domain1 Domai 100.0 1.3E-33 2.8E-38 300.9 19.0 194 542-769 1-202 (204)
336 cd03290 ABCC_SUR1_N The SUR do 100.0 2E-33 4.4E-38 302.6 20.3 198 544-769 3-216 (218)
337 COG5265 ATM1 ABC-type transpor 100.0 2.1E-34 4.6E-39 312.5 12.6 216 537-779 258-481 (497)
338 COG4674 Uncharacterized ABC-ty 100.0 6.3E-34 1.4E-38 278.2 14.2 216 541-780 5-231 (249)
339 TIGR00630 uvra excinuclease AB 100.0 3.8E-32 8.2E-37 338.3 32.3 124 641-780 789-921 (924)
340 cd03237 ABC_RNaseL_inhibitor_d 100.0 7.3E-33 1.6E-37 301.6 22.0 200 569-793 9-216 (246)
341 PRK10535 macrolide transporter 100.0 1.4E-32 3E-37 340.1 27.1 219 541-781 4-229 (648)
342 COG4586 ABC-type uncharacteriz 100.0 1.2E-33 2.7E-38 290.7 14.4 202 567-780 37-242 (325)
343 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.4E-32 3.1E-37 304.3 24.0 202 536-780 34-243 (282)
344 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.4E-33 1.6E-37 338.4 21.7 211 539-775 335-550 (555)
345 PRK15177 Vi polysaccharide exp 100.0 1.8E-32 3.9E-37 292.8 20.4 194 569-792 2-196 (213)
346 COG4608 AppF ABC-type oligopep 100.0 1.4E-32 3.1E-37 288.8 18.7 190 541-780 4-195 (268)
347 KOG0059 Lipid exporter ABCA1 a 100.0 6.5E-31 1.4E-35 333.5 37.3 224 540-791 563-790 (885)
348 PRK15064 ABC transporter ATP-b 100.0 4.9E-32 1.1E-36 330.0 24.4 206 542-780 2-238 (530)
349 COG4136 ABC-type uncharacteriz 100.0 1.4E-32 3.1E-37 256.7 13.8 191 542-754 3-196 (213)
350 PRK11819 putative ABC transpor 100.0 6.1E-32 1.3E-36 330.1 23.4 206 541-779 6-245 (556)
351 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.5E-32 7.5E-37 297.3 16.7 192 568-779 15-222 (255)
352 COG4172 ABC-type uncharacteriz 100.0 1.5E-31 3.3E-36 287.8 20.8 225 541-780 6-243 (534)
353 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.5E-31 3.2E-36 326.8 22.4 207 541-780 4-244 (552)
354 COG1101 PhnK ABC-type uncharac 100.0 5.2E-32 1.1E-36 269.4 14.7 220 565-793 17-251 (263)
355 cd03222 ABC_RNaseL_inhibitor T 100.0 2.6E-31 5.6E-36 272.3 19.0 156 566-791 12-170 (177)
356 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-31 5.1E-36 329.4 21.8 200 540-771 450-655 (659)
357 KOG0927 Predicted transporter 100.0 1.3E-31 2.9E-36 299.0 17.2 203 539-779 387-591 (614)
358 cd03238 ABC_UvrA The excision 100.0 4.1E-31 8.9E-36 270.6 19.4 154 566-769 7-163 (176)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.3E-31 9.3E-36 263.7 18.3 142 542-769 1-142 (144)
360 PLN03232 ABC transporter C fam 100.0 2.9E-31 6.2E-36 354.2 22.6 204 540-780 613-824 (1495)
361 PLN03130 ABC transporter C fam 100.0 4.9E-31 1.1E-35 351.6 22.6 204 540-781 613-825 (1622)
362 COG1134 TagH ABC-type polysacc 100.0 3.1E-30 6.7E-35 265.3 23.0 228 541-793 3-241 (249)
363 COG3845 ABC-type uncharacteriz 100.0 1.5E-29 3.3E-34 282.4 29.7 221 541-781 257-489 (501)
364 COG4133 CcmA ABC-type transpor 100.0 1.3E-30 2.9E-35 255.2 15.6 178 565-755 13-192 (209)
365 COG4167 SapF ABC-type antimicr 100.0 3.8E-30 8.3E-35 248.3 15.5 203 567-780 26-235 (267)
366 PRK10636 putative ABC transpor 100.0 1.3E-29 2.7E-34 312.8 22.5 204 542-779 2-231 (638)
367 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.3E-29 5.1E-34 256.3 18.3 151 544-769 2-155 (157)
368 TIGR00957 MRP_assoc_pro multi 100.0 2.6E-29 5.7E-34 336.0 22.6 204 540-781 635-847 (1522)
369 PRK11147 ABC transporter ATPas 100.0 5.4E-29 1.2E-33 308.3 23.2 203 542-779 4-238 (635)
370 PRK13409 putative ATPase RIL; 100.0 1.9E-29 4.1E-34 306.4 17.6 181 567-769 87-286 (590)
371 TIGR01271 CFTR_protein cystic 100.0 1.2E-28 2.5E-33 328.6 22.9 191 567-781 439-633 (1490)
372 COG4107 PhnK ABC-type phosphon 100.0 1.8E-28 3.8E-33 234.9 14.3 211 542-780 7-237 (258)
373 COG0488 Uup ATPase components 100.0 3.6E-28 7.8E-33 286.7 19.6 206 541-779 3-235 (530)
374 cd03270 ABC_UvrA_I The excisio 100.0 8.9E-28 1.9E-32 258.9 20.2 197 566-777 7-226 (226)
375 KOG0054 Multidrug resistance-a 100.0 1.2E-27 2.6E-32 301.6 21.3 206 539-781 516-728 (1381)
376 PTZ00243 ABC transporter; Prov 100.0 1.1E-27 2.5E-32 319.1 21.0 190 566-780 672-866 (1560)
377 PLN03073 ABC transporter F fam 99.9 8.1E-28 1.8E-32 297.0 15.0 212 540-779 176-426 (718)
378 cd03271 ABC_UvrA_II The excisi 99.9 5.8E-27 1.2E-31 254.3 19.2 195 569-779 10-261 (261)
379 PF00005 ABC_tran: ABC transpo 99.9 1.3E-27 2.8E-32 237.8 12.7 134 570-722 1-137 (137)
380 COG4778 PhnL ABC-type phosphon 99.9 2.6E-27 5.7E-32 226.3 12.7 213 541-769 4-227 (235)
381 cd03278 ABC_SMC_barmotin Barmo 99.9 1.6E-26 3.4E-31 243.1 12.7 169 570-771 12-192 (197)
382 COG4138 BtuD ABC-type cobalami 99.9 5.7E-27 1.2E-31 224.9 6.2 194 570-781 15-218 (248)
383 KOG0058 Peptide exporter, ABC 99.9 2.1E-26 4.6E-31 268.4 8.9 94 2-100 598-691 (716)
384 COG1245 Predicted ATPase, RNas 99.9 1E-23 2.2E-28 230.8 24.5 197 570-794 357-557 (591)
385 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.6E-24 7.8E-29 234.9 16.7 188 566-769 14-235 (243)
386 COG4178 ABC-type uncharacteriz 99.9 8.8E-24 1.9E-28 246.9 17.1 199 539-770 390-589 (604)
387 cd03240 ABC_Rad50 The catalyti 99.9 3.9E-24 8.4E-29 226.5 13.0 168 573-772 16-200 (204)
388 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.4E-25 5.1E-30 236.8 3.0 180 565-770 15-205 (212)
389 cd03279 ABC_sbcCD SbcCD and ot 99.9 5.9E-24 1.3E-28 227.5 11.9 180 571-771 18-210 (213)
390 COG4615 PvdE ABC-type sideroph 99.9 3.9E-24 8.5E-29 229.9 10.0 208 540-779 321-532 (546)
391 cd03273 ABC_SMC2_euk Eukaryoti 99.9 5.4E-24 1.2E-28 234.0 10.7 184 580-768 25-242 (251)
392 COG5265 ATM1 ABC-type transpor 99.9 5E-24 1.1E-28 232.1 7.8 95 1-100 392-486 (497)
393 KOG0062 ATPase component of AB 99.9 2.7E-21 5.8E-26 215.8 28.0 203 539-778 360-563 (582)
394 COG0178 UvrA Excinuclease ATPa 99.9 2.9E-21 6.3E-26 225.8 27.8 126 641-781 783-916 (935)
395 PRK00635 excinuclease ABC subu 99.9 2.5E-21 5.3E-26 251.4 29.0 125 641-780 1660-1792(1809)
396 KOG0056 Heavy metal exporter H 99.9 3.3E-23 7.3E-28 227.1 7.2 95 1-100 667-761 (790)
397 COG2274 SunT ABC-type bacterio 99.9 2.5E-22 5.4E-27 245.0 9.2 94 2-100 603-696 (709)
398 COG4170 SapD ABC-type antimicr 99.9 2E-21 4.2E-26 192.0 11.3 226 542-780 4-244 (330)
399 COG1135 AbcC ABC-type metal io 99.9 8.9E-22 1.9E-26 208.1 8.9 95 4-99 136-230 (339)
400 COG1126 GlnQ ABC-type polar am 99.9 1.7E-21 3.6E-26 196.0 10.3 94 4-99 131-224 (240)
401 KOG0057 Mitochondrial Fe/S clu 99.9 7.4E-22 1.6E-26 222.6 8.6 94 2-100 481-574 (591)
402 KOG0927 Predicted transporter 99.8 3.9E-21 8.4E-26 215.7 13.5 212 539-779 73-304 (614)
403 KOG0060 Long-chain acyl-CoA tr 99.8 2.2E-20 4.7E-25 211.2 17.8 207 540-772 432-644 (659)
404 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.2E-20 2.7E-25 198.6 14.8 169 570-769 12-190 (198)
405 COG1132 MdlB ABC-type multidru 99.8 2.8E-21 6E-26 238.1 9.8 94 2-100 459-552 (567)
406 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.6E-20 3.4E-25 205.8 11.3 179 582-771 24-235 (247)
407 KOG0066 eIF2-interacting prote 99.8 3.7E-20 8.1E-25 200.5 12.6 194 538-771 583-778 (807)
408 PRK11174 cysteine/glutathione 99.8 2E-20 4.3E-25 231.9 10.1 94 2-100 479-572 (588)
409 KOG2355 Predicted ABC-type tra 99.8 2.3E-19 5.1E-24 177.2 15.3 206 540-779 12-232 (291)
410 PF01061 ABC2_membrane: ABC-2 99.8 4.2E-21 9.1E-26 205.6 2.6 209 867-1081 1-210 (210)
411 COG4988 CydD ABC-type transpor 99.8 4.9E-20 1.1E-24 211.8 10.4 94 2-100 450-543 (559)
412 KOG0062 ATPase component of AB 99.8 6.4E-20 1.4E-24 204.9 9.7 199 540-778 79-279 (582)
413 COG1124 DppF ABC-type dipeptid 99.8 1E-19 2.3E-24 187.3 8.4 94 6-100 138-231 (252)
414 COG1131 CcmA ABC-type multidru 99.8 1.3E-19 2.8E-24 202.1 9.9 99 4-103 131-229 (293)
415 COG3638 ABC-type phosphate/pho 99.8 2.8E-19 6E-24 182.5 9.1 93 7-100 145-237 (258)
416 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.1E-19 6.8E-24 224.7 10.4 92 2-100 582-673 (686)
417 COG1120 FepC ABC-type cobalami 99.8 4.4E-19 9.5E-24 188.9 9.5 94 5-99 134-227 (258)
418 TIGR03375 type_I_sec_LssB type 99.8 4.4E-19 9.6E-24 223.6 10.5 94 2-100 595-688 (694)
419 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 4.3E-19 9.3E-24 224.5 10.0 92 2-100 609-700 (710)
420 COG4987 CydC ABC-type transpor 99.8 6.2E-19 1.3E-23 199.1 9.1 94 2-100 468-561 (573)
421 COG1245 Predicted ATPase, RNas 99.8 1.1E-18 2.4E-23 191.7 10.4 171 576-768 96-287 (591)
422 PRK11160 cysteine/glutathione 99.8 7.3E-19 1.6E-23 216.2 10.1 94 2-100 469-562 (574)
423 TIGR01193 bacteriocin_ABC ABC- 99.8 6.2E-19 1.3E-23 222.9 9.4 93 2-100 605-697 (708)
424 cd03239 ABC_SMC_head The struc 99.8 6.5E-18 1.4E-22 174.5 15.3 76 694-771 95-174 (178)
425 cd03277 ABC_SMC5_euk Eukaryoti 99.8 7.5E-18 1.6E-22 179.3 15.9 80 691-772 124-211 (213)
426 TIGR00958 3a01208 Conjugate Tr 99.8 7E-19 1.5E-23 221.3 9.4 92 2-100 611-702 (711)
427 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.8E-18 3.9E-23 183.3 11.0 147 570-778 17-173 (200)
428 PRK11176 lipid transporter ATP 99.8 1.1E-18 2.4E-23 216.2 10.1 94 2-100 474-567 (582)
429 TIGR02314 ABC_MetN D-methionin 99.8 1.7E-18 3.7E-23 196.6 9.8 94 5-99 136-229 (343)
430 PRK10790 putative multidrug tr 99.7 1.7E-18 3.6E-23 214.8 10.3 94 2-100 470-563 (592)
431 KOG0064 Peroxisomal long-chain 99.7 2.4E-18 5.3E-23 191.5 10.3 172 565-755 493-671 (728)
432 COG1122 CbiO ABC-type cobalt t 99.7 2.1E-18 4.6E-23 184.0 9.5 95 5-100 134-228 (235)
433 COG3840 ThiQ ABC-type thiamine 99.7 2.9E-18 6.2E-23 167.1 9.1 94 5-99 125-218 (231)
434 COG1127 Ttg2A ABC-type transpo 99.7 3.7E-18 7.9E-23 174.8 9.5 97 3-100 139-235 (263)
435 COG0444 DppD ABC-type dipeptid 99.7 3.6E-18 7.9E-23 184.2 9.8 96 4-100 148-243 (316)
436 COG2401 ABC-type ATPase fused 99.7 8.3E-18 1.8E-22 182.4 12.4 184 565-771 394-586 (593)
437 PRK13643 cbiO cobalt transport 99.7 5.2E-18 1.1E-22 190.0 10.7 111 5-117 140-253 (288)
438 PRK09473 oppD oligopeptide tra 99.7 5.6E-18 1.2E-22 192.5 10.3 95 5-100 157-251 (330)
439 TIGR01842 type_I_sec_PrtD type 99.7 4.8E-18 1E-22 208.2 10.2 92 6-100 451-542 (544)
440 PRK13637 cbiO cobalt transport 99.7 8.1E-18 1.8E-22 188.4 11.0 96 4-100 139-234 (287)
441 COG1136 SalX ABC-type antimicr 99.7 5.2E-18 1.1E-22 177.1 8.7 83 5-89 138-220 (226)
442 PRK13631 cbiO cobalt transport 99.7 8.1E-18 1.7E-22 190.4 11.0 105 5-111 172-279 (320)
443 PRK11022 dppD dipeptide transp 99.7 7.2E-18 1.6E-22 191.5 10.5 95 5-100 149-243 (326)
444 PRK11650 ugpC glycerol-3-phosp 99.7 6.2E-18 1.3E-22 193.8 9.9 96 4-100 129-224 (356)
445 TIGR01846 type_I_sec_HlyB type 99.7 5.4E-18 1.2E-22 213.6 10.3 94 2-100 587-680 (694)
446 cd03261 ABC_Org_Solvent_Resist 99.7 5.8E-18 1.3E-22 184.6 9.2 94 5-99 132-225 (235)
447 COG1125 OpuBA ABC-type proline 99.7 1.1E-17 2.4E-22 171.7 10.5 96 4-100 130-225 (309)
448 PRK13634 cbiO cobalt transport 99.7 1E-17 2.2E-22 187.9 10.7 94 5-99 141-234 (290)
449 PRK13657 cyclic beta-1,2-gluca 99.7 7.3E-18 1.6E-22 208.7 10.3 94 2-100 465-558 (588)
450 cd03256 ABC_PhnC_transporter A 99.7 9.9E-18 2.1E-22 183.8 10.2 94 5-99 140-233 (241)
451 cd03233 ABC_PDR_domain1 The pl 99.7 1.1E-17 2.4E-22 177.6 10.1 90 4-93 113-202 (202)
452 TIGR01192 chvA glucan exporter 99.7 8.7E-18 1.9E-22 207.0 10.4 91 6-100 468-558 (585)
453 cd03283 ABC_MutS-like MutS-lik 99.7 1.3E-17 2.8E-22 175.6 9.8 135 567-754 14-149 (199)
454 TIGR03265 PhnT2 putative 2-ami 99.7 1.1E-17 2.3E-22 191.6 9.5 96 4-100 129-224 (353)
455 PRK10789 putative multidrug tr 99.7 1.1E-17 2.3E-22 206.0 10.1 91 6-100 448-538 (569)
456 TIGR02203 MsbA_lipidA lipid A 99.7 1E-17 2.2E-22 207.5 10.0 94 2-100 463-556 (571)
457 PRK13537 nodulation ABC transp 99.7 1.2E-17 2.6E-22 188.4 9.6 95 4-100 133-227 (306)
458 PRK11432 fbpC ferric transport 99.7 1.2E-17 2.5E-22 190.9 9.7 95 4-99 131-225 (351)
459 PRK11308 dppF dipeptide transp 99.7 1.5E-17 3.3E-22 188.7 10.6 96 4-100 149-244 (327)
460 COG4555 NatA ABC-type Na+ tran 99.7 1.3E-17 2.8E-22 165.5 8.5 94 5-100 129-222 (245)
461 TIGR01186 proV glycine betaine 99.7 1.2E-17 2.7E-22 190.6 9.8 95 5-100 125-219 (363)
462 PRK11153 metN DL-methionine tr 99.7 1.3E-17 2.9E-22 190.9 9.8 95 5-100 136-230 (343)
463 TIGR03258 PhnT 2-aminoethylpho 99.7 1.4E-17 3E-22 190.9 9.6 96 4-100 132-228 (362)
464 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.6E-17 3.5E-22 184.5 9.9 94 5-99 156-249 (269)
465 PRK10851 sulfate/thiosulfate t 99.7 1.8E-17 3.9E-22 189.8 10.4 96 4-100 131-226 (353)
466 TIGR02315 ABC_phnC phosphonate 99.7 1.7E-17 3.6E-22 182.2 9.8 93 5-98 141-233 (243)
467 cd03296 ABC_CysA_sulfate_impor 99.7 1.6E-17 3.4E-22 181.6 9.4 94 5-99 132-225 (239)
468 TIGR02770 nickel_nikD nickel i 99.7 1.8E-17 3.8E-22 180.1 9.6 95 4-99 120-214 (230)
469 PRK15093 antimicrobial peptide 99.7 2.1E-17 4.6E-22 188.4 10.5 95 5-100 154-248 (330)
470 PRK09452 potA putrescine/sperm 99.7 1.9E-17 4.2E-22 190.3 10.0 96 4-100 139-234 (375)
471 COG1117 PstB ABC-type phosphat 99.7 1.5E-17 3.2E-22 166.7 7.8 90 7-99 147-236 (253)
472 PRK15079 oligopeptide ABC tran 99.7 2.3E-17 5E-22 187.3 10.5 96 4-100 156-251 (331)
473 TIGR01188 drrA daunorubicin re 99.7 2.5E-17 5.5E-22 186.0 10.4 95 4-100 119-213 (302)
474 cd03241 ABC_RecN RecN ATPase i 99.7 1.1E-16 2.4E-21 178.2 15.3 76 693-771 170-249 (276)
475 cd03234 ABCG_White The White s 99.7 3E-17 6.5E-22 177.8 10.3 89 4-93 138-226 (226)
476 PRK11000 maltose/maltodextrin 99.7 2.4E-17 5.2E-22 190.3 9.8 95 5-100 129-223 (369)
477 cd03260 ABC_PstB_phosphate_tra 99.7 2.3E-17 4.9E-22 179.0 8.9 89 7-98 139-227 (227)
478 TIGR01187 potA spermidine/putr 99.7 2.7E-17 5.8E-22 187.1 9.8 96 4-100 95-190 (325)
479 cd03295 ABC_OpuCA_Osmoprotecti 99.7 2.6E-17 5.6E-22 180.4 9.3 95 4-99 130-224 (242)
480 cd03219 ABC_Mj1267_LivG_branch 99.7 2.6E-17 5.6E-22 179.8 9.2 93 5-99 139-231 (236)
481 cd03259 ABC_Carb_Solutes_like 99.7 2.6E-17 5.6E-22 176.7 9.0 88 5-93 126-213 (213)
482 PRK11607 potG putrescine trans 99.7 2.8E-17 6E-22 189.4 9.8 96 4-100 144-239 (377)
483 PRK13636 cbiO cobalt transport 99.7 3.7E-17 8E-22 182.9 10.4 96 4-100 136-231 (283)
484 PRK13646 cbiO cobalt transport 99.7 3.3E-17 7.1E-22 183.6 10.0 95 5-100 141-235 (286)
485 cd03285 ABC_MSH2_euk MutS2 hom 99.7 3.4E-17 7.3E-22 175.3 9.6 152 567-778 17-175 (222)
486 cd03224 ABC_TM1139_LivF_branch 99.7 2.8E-17 6E-22 177.8 9.0 93 5-99 128-220 (222)
487 cd03258 ABC_MetN_methionine_tr 99.7 3.2E-17 7E-22 178.6 9.5 94 5-99 136-229 (233)
488 PRK13648 cbiO cobalt transport 99.7 5.6E-17 1.2E-21 180.3 11.6 94 4-99 137-230 (269)
489 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 4E-17 8.8E-22 172.8 9.8 94 4-100 134-227 (254)
490 PRK09536 btuD corrinoid ABC tr 99.7 3.1E-17 6.8E-22 189.5 9.7 94 4-99 134-227 (402)
491 PRK13647 cbiO cobalt transport 99.7 5.5E-17 1.2E-21 180.6 11.3 92 5-98 134-225 (274)
492 cd03293 ABC_NrtD_SsuB_transpor 99.7 3.6E-17 7.9E-22 176.5 9.5 91 5-96 127-219 (220)
493 PRK11701 phnK phosphonate C-P 99.7 3.9E-17 8.5E-22 180.6 9.8 94 5-99 147-240 (258)
494 PRK13650 cbiO cobalt transport 99.7 5.9E-17 1.3E-21 180.8 11.3 93 5-99 136-228 (279)
495 TIGR01184 ntrCD nitrate transp 99.7 3E-17 6.6E-22 178.0 8.6 94 5-99 110-203 (230)
496 PRK14257 phosphate ABC transpo 99.7 4.2E-17 9.2E-22 185.1 10.1 91 5-99 221-312 (329)
497 TIGR01288 nodI ATP-binding ABC 99.7 3.9E-17 8.4E-22 184.6 9.7 95 4-100 130-224 (303)
498 PRK10418 nikD nickel transport 99.7 4.3E-17 9.3E-22 179.8 9.9 94 5-99 136-229 (254)
499 TIGR02769 nickel_nikE nickel i 99.7 3.7E-17 8E-22 181.4 9.4 94 5-99 146-239 (265)
500 cd03265 ABC_DrrA DrrA is the A 99.7 4.7E-17 1E-21 175.6 9.9 93 5-98 127-219 (220)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-185 Score=1665.58 Aligned_cols=1101 Identities=52% Similarity=0.924 Sum_probs=1004.4
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+|||+++||+||||||||+||++++++|+++|+||+|.||||.++.++++++|++++..++|.+++|+||+++++.+||+
T Consensus 252 ~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~ 331 (1391)
T KOG0065|consen 252 LVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDD 331 (1391)
T ss_pred eecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|++||+||.+++++||+++||.||+++++|||++++++..++.+++.+.+.+....+..++.+.|.+++.+.++
T Consensus 332 v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l 411 (1391)
T KOG0065|consen 332 VILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKL 411 (1391)
T ss_pred eeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHH
Confidence 99999999999999999999999999999999999999999999888888887777777777889999999999999999
Q ss_pred HHhhcCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001146 161 SDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240 (1140)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~ 240 (1140)
..+...+.++.+.+.......++..+.|+|++.++.|.+..++||..++....++.++++++.|++|++.+. ++..+.
T Consensus 412 ~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~ 489 (1391)
T KOG0065|consen 412 KKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGG 489 (1391)
T ss_pred HHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccc
Confidence 998888888777777777788899999999999999999999999999999999999999999999999874 445556
Q ss_pred cchhhHHHHHHHHHHHhhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCccCchh
Q 001146 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAG 320 (1140)
Q Consensus 241 ~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl~~~~~ 320 (1140)
..+.|++||++.+.++.+++++...++++|+++|||...+|+||+|.++.+++++|..++...+|.+|.||+.|++++++
T Consensus 490 ~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~ 569 (1391)
T KOG0065|consen 490 YSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAG 569 (1391)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHHHHh
Q 001146 321 RFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVAN 400 (1140)
Q Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~n 400 (1140)
+||.+++.++.++.++.+++++++++++++.+|+.+|++.++++.+++||+++..+||+||+|++|++|+.|++++++.|
T Consensus 570 rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~N 649 (1391)
T KOG0065|consen 570 RFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSN 649 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccccccCCC---------------CcchHHHHHhhcCcc-----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 401 EFLGHSWKKFTQDS---------------SETLGVQVLKSRGFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFL 460 (1140)
Q Consensus 401 e~~~~~~~~~~~~~---------------~~~~g~~~l~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 460 (1140)
||+++++.|.+.++ ....|.++++.+++. ....|+|+++++++++.++|.+++.+++.|.
T Consensus 650 EF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl 729 (1391)
T KOG0065|consen 650 EFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYL 729 (1391)
T ss_pred hhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhc
Confidence 99999888763221 244577888887777 5567899999999999999999999999999
Q ss_pred CCCCCCccceeecccccccccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCCCCcccCCCCc
Q 001146 461 DPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPH 540 (1140)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1140)
++..++......+.......... .+. + ...+..++. ....++++..+..+.
T Consensus 730 ~p~~~~~~~l~~~~~~~~~~~~~---------~~~-----------------~--~~~~~~~~s-~~~~~~~~~~~~~~~ 780 (1391)
T KOG0065|consen 730 KPLKKSGAILVFKKGKEKKKVKS---------AGS-----------------S--SEIEKLDDS-SHQEKNKMVLPFTPL 780 (1391)
T ss_pred Cccccccceeeeccchhhhcchh---------ccc-----------------c--ccccccccc-cccccccccCCCccc
Confidence 99888877665443222111000 000 0 000000000 000123334444456
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||.+-.+++-..+.++ +++++|+|||+.++||.++||||+||||||||||+|+||...|.++|+|++||.|.
T Consensus 781 ~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~ 857 (1391)
T KOG0065|consen 781 SLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPK 857 (1391)
T ss_pred cccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeC
Confidence 667777777666554444443 67889999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
++..++|.+|||.|+|.|.|.+||||.|.|+|.+|++.+.+.++|.+.|+++++.++|.+++|.+||.+| +|||.+|||
T Consensus 858 ~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRK 936 (1391)
T KOG0065|consen 858 DQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRK 936 (1391)
T ss_pred chhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhhCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p-~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++||.+|+.|| .||+|||||||||++++..|++.+|+++++|+||+||+||||.++++.||++++|++||++||+||.
T Consensus 937 rLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 937 RLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred eeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhhhhcccHHHHHhhcHHHHHHHHHHHhhCCCCCC-CCCCCCC
Q 001146 780 GRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPG-SKDLYFP 858 (1140)
Q Consensus 780 ~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~ 858 (1140)
+++++++++||+++++. +|++..|||||+||+++...+...+.||++.|++|++++++++++++++++++. ..+...+
T Consensus 1017 G~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~ 1095 (1391)
T KOG0065|consen 1017 GENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFK 1095 (1391)
T ss_pred ccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccc
Confidence 99999999999999886 577777999999999998877777889999999999999999999999988877 6666777
Q ss_pred CccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 001146 859 TQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCS 938 (1140)
Q Consensus 859 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 938 (1140)
++|+.|+|.|++.++||+++.+||+|.++++|++..++.||++|++||++++ +.++++|.+|++|+++++.+...+.
T Consensus 1096 ~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~ 1172 (1391)
T KOG0065|consen 1096 TRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQ 1172 (1391)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8899999999999999999999999999999999999999999999999985 6899999999999999998887776
Q ss_pred hhhhhHHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHH
Q 001146 939 SVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1018 (1140)
Q Consensus 939 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~ 1018 (1140)
...+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|.+++|+|+||.+++.+|++|++.+++..++.+.+
T Consensus 1173 ~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~ 1252 (1391)
T KOG0065|consen 1173 LQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTL 1252 (1391)
T ss_pred hhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccC--------
Q 001146 1019 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD-------- 1090 (1140)
Q Consensus 1019 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~-------- 1090 (1140)
|+|+.+++||.+.|+.+.+++++++.+|||+++|++.||.||+|+||+||+.|.+++++..+++|.+..|..
T Consensus 1253 Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p 1332 (1391)
T KOG0065|consen 1253 GMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP 1332 (1391)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888854
Q ss_pred -CCCCHHHHHHhhcC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1091 -TGETVKQFLKDYFD----FKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1091 -~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
.|.++++|+.+.+| +.++.......+..++.+++..++.+.+||.+++||
T Consensus 1333 p~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1333 PSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 34589999999999 777777777778888999999999999999999886
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.5e-178 Score=1731.12 Aligned_cols=1138 Identities=61% Similarity=1.097 Sum_probs=977.1
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+|||+.+|||||||||||+|||+|+++|+||||||||||||+.++.++++.|+++++..++|+|+++|||+.+++++||+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 37999999999999999999999999999999999999999999999999999988777899999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|+++|+||.+++++||+++||+||+++|||||+++++++.++++++.....++...+.+++.++|++++.+.+.
T Consensus 408 vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~ 487 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQL 487 (1470)
T ss_pred EEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999876655554444444456789999999998777666
Q ss_pred HHhhcCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001146 161 SDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDG 240 (1140)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~ 240 (1140)
.++...+.++...+........+..+++.|++.+++|.++.++||+..+..++++.+++|+++|++||+++.+.....++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~ 567 (1470)
T PLN03140 488 ENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG 567 (1470)
T ss_pred HHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhH
Confidence 55544333322222222233457788899999999999999999999999999999999999999999997665555556
Q ss_pred cchhhHHHHHHHHHHHhhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCccCchh
Q 001146 241 GIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAG 320 (1140)
Q Consensus 241 ~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl~~~~~ 320 (1140)
+.+.|++||++.+.++.++..+..++.+||+|+|||..++|++++|++|++++++|+.++.+++|++|+|||+|++++++
T Consensus 568 ~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 568 ALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 77899999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHHHHh
Q 001146 321 RFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVAN 400 (1140)
Q Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~n 400 (1140)
+|+.+++.++++..++.+++.+++++++++.+|+.+++++++++++|+||+++.++||+||+|++|+||+.|++++++.|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccccc-cCCCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccceeeccccccc
Q 001146 401 EFLGHSWKKF-TQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQ 479 (1140)
Q Consensus 401 e~~~~~~~~~-~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 479 (1140)
||.+..+.+. +.......|.+++..+++...+.|+|+++++++++.++|.+++++++++.+...........+......
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~ 807 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEME 807 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhh
Confidence 9988765432 222345679999999999888889999999999999999999999999988655444332211100000
Q ss_pred ccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCCCCcccCCCCcEEEEEeEEEEEecCchhhh
Q 001146 480 DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKV 559 (1140)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1140)
............-.+..........|........... ...........+.++..|..+..++|+||+|.++.+...+.
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~ 885 (1470)
T PLN03140 808 GEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRD--SSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKE 885 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccCCCcceEEEEEEEEEEccCccccc
Confidence 0000000000000000000000000000000000000 00000001112233344666788999999999987654333
Q ss_pred cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCC
Q 001146 560 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 639 (1140)
Q Consensus 560 ~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~ 639 (1140)
.+...+++++|+|||++++|||++||+||||||||||||+|+|+.++++.+|+|.+||.+.+...+++.+|||+|+|.++
T Consensus 886 ~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~ 965 (1470)
T PLN03140 886 QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965 (1470)
T ss_pred cccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccC
Confidence 33334566899999999999999999999999999999999999876678999999998876555677899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
|.+||+||+.|++.++.+...+.++++++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|++|||||
T Consensus 966 ~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDE 1045 (1470)
T PLN03140 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE 1045 (1470)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999999999988887655666667788999999999999999999988888999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCC
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKI 799 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~ 799 (1140)
||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++||+++|+||++++++++++||++++|.++|
T Consensus 1046 PTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1046 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 99999999999999999999988999999999999778999999999998899999999987778899999999777779
Q ss_pred CCCCCcccceeeccchhhhhhhcccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcchHHHHHHHHHHHHHH
Q 001146 800 KDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWS 879 (1140)
Q Consensus 800 ~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~ 879 (1140)
|+++|||||++|+++...+.....||++.|++|+.+++.++.+++...+++..++...+++++.++|+|+++|++|++++
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~ 1205 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWT 1205 (1470)
T ss_pred CCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHH
Confidence 99999999999998765554455689999999999998877777666554444444445678999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHhcCCC
Q 001146 880 YWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGM 959 (1140)
Q Consensus 880 ~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~ 959 (1140)
+||||.++..|+++++++|+++|++||+++++..+.++++++.|++|++++++++.++.+++|.+..||++|+||+++|+
T Consensus 1206 ~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~ 1285 (1470)
T PLN03140 1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285 (1470)
T ss_pred HHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999987666789999999999999999998888899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001146 960 YAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLF 1039 (1140)
Q Consensus 960 Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 1039 (1140)
|++.+|++|++++|+|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++|+++++++||.++|+.+++++
T Consensus 1286 Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~ 1365 (1470)
T PLN03140 1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAF 1365 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccCCC----CCHHHHHHhhcCCCCCchhHHHH
Q 001146 1040 YGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTG----ETVKQFLKDYFDFKHDFLGVVAA 1115 (1140)
Q Consensus 1040 ~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 1115 (1140)
++++++|+||++|+++||+||+|++|+||++|+++|++.|||+|.+.+|.+.+ .++.+|++++|||+++++|++++
T Consensus 1366 ~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1445 (1470)
T PLN03140 1366 YGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAA 1445 (1470)
T ss_pred HHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhh
Confidence 99999999999999999999999999999999999999999999887665533 56789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1116 VLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1116 il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
|+++|+++|+++++++++++|||||
T Consensus 1446 il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1446 VLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999998
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.8e-160 Score=1569.56 Aligned_cols=1099 Identities=31% Similarity=0.542 Sum_probs=905.0
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
.|||+.+|+|||||||||+|||+|+++|+||||||||||||+.++.++++.|+++++..|+|||+++|||+.+++++||+
T Consensus 201 ~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 37899999999999999999999999999999999999999999999999999988767899999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|+++|+|+.+++++||+++||+||+++|||||+++++++++.. .... .+.....+.+++.+.|++++.+++.
T Consensus 281 v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~ 358 (1394)
T TIGR00956 281 VIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKPG-YEKKVPRTPQEFETYWRNSPEYAQL 358 (1394)
T ss_pred EEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-cccc-ccccCCCCHHHHHHHHHcCHHHHHH
Confidence 9999999999999999999999999999999999999999998765421 1111 1111235678899999888766554
Q ss_pred HHhhcCCccC-----c----------cccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 001146 161 SDELRTPFDK-----S----------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 225 (1140)
Q Consensus 161 ~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~ 225 (1140)
..+.+...++ . ...........+..+++.|++.+++|.++..+||+..+.+++++.+++|+++|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~ 438 (1394)
T TIGR00956 359 MKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSS 438 (1394)
T ss_pred HHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4433221110 0 000011122346678999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCccccccchhhHHHHHHHHHHHhhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHH
Q 001146 226 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVW 305 (1140)
Q Consensus 226 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~ 305 (1140)
+||+.+.+..+ .+.+.|++|+++.+..+.++..+..++.+|++++||+..++|++++|++|+.++++|+.++.+++|
T Consensus 439 ~F~~~~~~~~~---~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if 515 (1394)
T TIGR00956 439 VFYNLPKNTSD---FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVF 515 (1394)
T ss_pred hhcCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998865443 456799999999998888888888888999999999999999999999999999999999999999
Q ss_pred HhhhhhccCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhh
Q 001146 306 VFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAY 385 (1140)
Q Consensus 306 ~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~ 385 (1140)
++|+|||+|++.++++|+.+++..++...++.+++.+++++++++.+|+.+++++.+++++|+||+++.+.||.||+|++
T Consensus 516 ~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~ 595 (1394)
T TIGR00956 516 NIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIY 595 (1394)
T ss_pred HhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHhhcCCCccccc---cC-----------CC----------CcchHHHHHhhcCccccchhhHHHHHH
Q 001146 386 WCSPLTYAQNAIVANEFLGHSWKKF---TQ-----------DS----------SETLGVQVLKSRGFFAHEYWYWLGLGA 441 (1140)
Q Consensus 386 ~isp~~y~~~a~~~ne~~~~~~~~~---~~-----------~~----------~~~~g~~~l~~~~~~~~~~~~~~~~~~ 441 (1140)
|+||++|++++++.|||.+..+.|. +. .. +...|.+++.. .+.....+.|+++++
T Consensus 596 yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gi 674 (1394)
T TIGR00956 596 YVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGI 674 (1394)
T ss_pred HcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHH
Confidence 9999999999999999999877663 11 01 13467888884 333334578999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccceeecccccccccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhh
Q 001146 442 LFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLA 521 (1140)
Q Consensus 442 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1140)
++++.++|.+.+++++.+.+........................ ... ....+..+..........
T Consensus 675 l~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~e~~~~~~~~~~~-- 739 (1394)
T TIGR00956 675 IIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGE---------TSA----SNKNDIEAGEVLGSTDLT-- 739 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhccc---------ccc----cccccccccccCCCCccc--
Confidence 99999999999999999987555443332211100000000000 000 000000000000000000
Q ss_pred hhhccCCCCCCcccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 522 EAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
.+.+................++|+||+++++.+ ++++.+|+|||++++|||++||+||||||||||||+|+
T Consensus 740 ~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~La 810 (1394)
T TIGR00956 740 DESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA 810 (1394)
T ss_pred cccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 000000000000001112358999999998532 13467999999999999999999999999999999999
Q ss_pred cCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc
Q 001146 602 GRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680 (1140)
Q Consensus 602 g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 680 (1140)
|+.+++ +.+|+|.+||++... .+++.++||+|+|.+++.+||+||+.|++.++.+...++++++++++++++.++|.+
T Consensus 811 g~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~ 889 (1394)
T TIGR00956 811 ERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES 889 (1394)
T ss_pred CCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 987644 457999999998753 467889999999999999999999999998887655666777788999999999999
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHHHHhhCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHH
Q 001146 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 759 (1140)
Q Consensus 681 ~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~-illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~ 759 (1140)
+.|+.+|.++ .+||||||||++||+||+.+|+ ||+|||||||||+.++..+++.|++++++|+|||+++|||+..+++
T Consensus 890 ~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~ 968 (1394)
T TIGR00956 890 YADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFE 968 (1394)
T ss_pred hCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHH
Confidence 9999998764 3799999999999999999997 9999999999999999999999999988899999999999976788
Q ss_pred hhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhhhhcccHHHHHhhcHHHHHHH
Q 001146 760 AFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNK 839 (1140)
Q Consensus 760 ~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 839 (1140)
.||++++|++||+++|+|++++.++++++||+.+ |.++||+++|||||++|+++...+.....++.+.|+.|+.++...
T Consensus 969 ~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~ 1047 (1394)
T TIGR00956 969 EFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK 1047 (1394)
T ss_pred hcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHH
Confidence 9999999998779999999987778899999998 445799999999999999876443333468999999998887765
Q ss_pred HHHHhhCCCCCCC---CCCCCCCccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChh
Q 001146 840 ALIEDLSRPPPGS---KDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQ 916 (1140)
Q Consensus 840 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~ 916 (1140)
+.++....+.... .......+++.|+++|+++|++|+++++||||.++.+|+++++++|+++|++||++++ +++
T Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~ 1124 (1394)
T TIGR00956 1048 NELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQ 1124 (1394)
T ss_pred HHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHH
Confidence 5554443221111 1111224688999999999999999999999999999999999999999999999986 467
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 001146 917 DLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVF-YREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFE 995 (1140)
Q Consensus 917 ~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~ 995 (1140)
++++|+|++|+++++.++.. ...++.|+.||.+| +||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+||+
T Consensus 1125 ~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~ 1203 (1394)
T TIGR00956 1125 GLQNQMFAVFMATVLFNPLI-QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFY 1203 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeeccccc
Confidence 89999999999888777653 45567788888886 89999999999999999999999999999999999999999999
Q ss_pred cchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcH
Q 001146 996 WTAAK-------FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANP 1068 (1140)
Q Consensus 996 ~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp 1068 (1140)
+++.. |++|++++++..++++++|+++++++|+..+|+.+++++++++++|+||++++++||.||+|++|+||
T Consensus 1204 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp 1283 (1394)
T TIGR00956 1204 WNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSP 1283 (1394)
T ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCH
Confidence 88766 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcccccCC---------CC--------------------------------CHHHHHHhhcCCCC
Q 001146 1069 IAWTLYGLVASQFGDMDDKKMDT---------GE--------------------------------TVKQFLKDYFDFKH 1107 (1140)
Q Consensus 1069 ~~y~~~~l~~nef~~~~~~~~~~---------~~--------------------------------~~~~~~~~~~~~~~ 1107 (1140)
++|+++|++.|||++.+..|.+. |. ++.+++ ..+|++.
T Consensus 1284 ~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~ 1362 (1394)
T TIGR00956 1284 FTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKY 1362 (1394)
T ss_pred HHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcc
Confidence 99999999999999987766331 11 334444 5679999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001146 1108 DFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138 (1140)
Q Consensus 1108 ~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1138 (1140)
++.|+|++|+++|++++ ++.++++.+....
T Consensus 1363 ~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1363 SGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred cccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 99999999999999988 7777888876443
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-97 Score=898.73 Aligned_cols=579 Identities=31% Similarity=0.579 Sum_probs=504.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEc
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 616 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~ 616 (1140)
.+..++|+|++++.+..+. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567999999998753211 3578999999999999999999999999999999999998764 689999999
Q ss_pred CcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 617 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 617 g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
|++...+.+++.+|||+|||.++|++||+|++.|++.+|++...++++++++|+++++++||.+++|+++|+++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98887788999999999999999999999999999999999888899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|++ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 799999
Q ss_pred CCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchh--hh-hhh---cccHHHHHhhcHHHHHHHH-HHHhhCCCC
Q 001146 777 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAAS--QE-LAL---GIDFTEHYKRSDLYRRNKA-LIEDLSRPP 849 (1140)
Q Consensus 777 g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~--~~-~~~---~~~~~~~~~~s~~~~~~~~-~~~~~~~~~ 849 (1140)
|++ +++.+||+++| . +||++.||+||++|+.+.. .+ ... .....+.++..+...+... ..+...+.
T Consensus 253 G~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS- 325 (613)
T ss_pred cCH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccc-
Confidence 998 57899999995 4 5999999999999988742 11 000 0001111110111111100 00111110
Q ss_pred CCCCCCCCCCccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHH
Q 001146 850 PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAV 929 (1140)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~ 929 (1140)
.+ .+.....+||.|++.+++|.+++.+|||.+...|.++.+++|+++|++||+++++ ..+++++.|++|+.+
T Consensus 326 ---~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 326 ---KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFIL 397 (613)
T ss_pred ---cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHH
Confidence 01 1111268999999999999999999999999999999999999999999999763 456679999999999
Q ss_pred HHHHHHHhhhhhhhHHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHH
Q 001146 930 LFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMY 1009 (1140)
Q Consensus 930 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~ 1009 (1140)
.++.+.++.+.++.|++||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99989888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCccccc
Q 001146 1010 FTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKM 1089 (1140)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~ 1089 (1140)
+..+++++++++++++.||...|..+++++++.+++|+||+++.++||.||+|++|+|+++|++|+++.|||.+....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997333443
Q ss_pred CCC----CCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1090 DTG----ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1090 ~~~----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
..+ ...++.++...+++..+.|.++.+++++.++|++++++++++..+.+|
T Consensus 558 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 558 LSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 221 123444556789999999999999999999999999999998776654
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.6e-96 Score=902.90 Aligned_cols=566 Identities=29% Similarity=0.491 Sum_probs=498.3
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
+++++|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.++||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4577999999999999999999999999999999999987653 358999999998765667788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~-~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
|+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998887666777788889999999999999999999754 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCC
Q 001146 723 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 802 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 802 (1140)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+|++ +++.+||+++| . +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g-~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG-H-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC-C-CCCCC
Confidence 9999999999999999988899999999999888999999999998 4899999997 46899999995 3 69999
Q ss_pred CCcccceeeccchhhhhh-----hcccHHHHHhhcHHHHHHHHHHHhhCCCCC---CCCCCCCCCccCcchHHHHHHHHH
Q 001146 803 YNPATWMLEVSAASQELA-----LGIDFTEHYKRSDLYRRNKALIEDLSRPPP---GSKDLYFPTQFSQSSWIQFVACLW 874 (1140)
Q Consensus 803 ~npad~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 874 (1140)
.|||||++|+.+.+.+.. ...++.+.|+.++.+++..+.........+ .........++..+|++|+.+|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999986543211 112455667777665554333322111110 111111224567899999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHH
Q 001146 875 KQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYRE 954 (1140)
Q Consensus 875 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 954 (1140)
|+++..||||.++..|+++.+++|+++|++||+++.+ .++++++.|++|++++++++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999863 5788999999999999888888777788899999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 001146 955 KAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAI 1034 (1140)
Q Consensus 955 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1034 (1140)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcc-cccCC-----CCCHHHHHHhhcCCCCC
Q 001146 1035 VSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD-KKMDT-----GETVKQFLKDYFDFKHD 1108 (1140)
Q Consensus 1035 ~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~ 1108 (1140)
+++++++++++|+||++++++||+||+|++|+||++|++++++.|||++..+ +|... ++..++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998765 56431 11235777789999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001146 1109 FLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1140 (1140)
Q Consensus 1109 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1140 (1140)
+.|+++++|+++.++|+++++++|++...++|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999877776
No 6
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-95 Score=894.46 Aligned_cols=581 Identities=24% Similarity=0.412 Sum_probs=482.3
Q ss_pred CcEEEEEeEEEEEecCchh--------------hhc--ccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 539 PHSLTFDEVVYSVDMPEEM--------------KVQ--GVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+.+++|.|++|+++..... +.. ....+++++|+|+|+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999998644200 000 112245789999999999999999999999999999999999
Q ss_pred CCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc
Q 001146 603 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682 (1140)
Q Consensus 603 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 682 (1140)
+.+++..+|+|.+||++.... .++.++||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||.++.
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 876544689999999986533 3456899999999999999999999998777655555666677889999999999999
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 762 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 762 (1140)
|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.+.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999887889999999999999999999999999999999999999999999999988899999999999977899999
Q ss_pred eEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhhh---------hcccHHHHHhhcH
Q 001146 763 ELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA---------LGIDFTEHYKRSD 833 (1140)
Q Consensus 763 ~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~---------~~~~~~~~~~~s~ 833 (1140)
++++|++ |+++|+|+. +++.+||+++| . +||+++|||||++|+++...+.. ......+.|++..
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence 9999985 899999997 57899999995 3 69999999999999987532100 0011223443211
Q ss_pred HHHHHHHHHHh--hCC-CCC-----CCCCC-CCCCccCcchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH
Q 001146 834 LYRRNKALIED--LSR-PPP-----GSKDL-YFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSL 904 (1140)
Q Consensus 834 ~~~~~~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~ 904 (1140)
.++..+..+. ... ... ..+.. .....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|++
T Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~l 426 (659)
T PLN03211 349 -APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLM 426 (659)
T ss_pred -cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 000 000 00000 011234578999999999999988 899999999999999999999999
Q ss_pred hccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 001146 905 FWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVY 984 (1140)
Q Consensus 905 f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~ 984 (1140)
||+++ ..++++|.|++||+++++++.+++.+++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|
T Consensus 427 f~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if 501 (659)
T PLN03211 427 WWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIF 501 (659)
T ss_pred HhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99984 4578999999999999988888777889999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhH
Q 001146 985 GAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYY 1064 (1140)
Q Consensus 985 ~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~ 1064 (1140)
++|+|||+||++++.+||+|++++++..++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|++
T Consensus 502 ~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ 579 (659)
T PLN03211 502 LTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIK 579 (659)
T ss_pred HhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred hhcHHHHHHHHHHHHhhCCCc-----ccccCC-C--CCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 1065 WANPIAWTLYGLVASQFGDMD-----DKKMDT-G--ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFN 1136 (1140)
Q Consensus 1065 ~isp~~y~~~~l~~nef~~~~-----~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~ 1136 (1140)
|+||++|+||+++.|||++.. .+|... + .....++ ...+++....|.++++|++++++|+++++++|++++
T Consensus 580 ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 580 YISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999997643 245321 1 1111222 223444556899999999999999999999999887
Q ss_pred c
Q 001146 1137 F 1137 (1140)
Q Consensus 1137 ~ 1137 (1140)
|
T Consensus 659 ~ 659 (659)
T PLN03211 659 H 659 (659)
T ss_pred C
Confidence 5
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.6e-93 Score=938.82 Aligned_cols=589 Identities=24% Similarity=0.388 Sum_probs=507.1
Q ss_pred CCcEEEEEeEEEEEecCchh-------------h-h-----cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHH
Q 001146 538 EPHSLTFDEVVYSVDMPEEM-------------K-V-----QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 598 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~-------------~-~-----~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~ 598 (1140)
....++|+|++......+.. . . .+..+.++++|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 46789999999876321110 0 0 122234578999999999999999999999999999999
Q ss_pred HHhcCCcC--ceEEEEEEEcCcccCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC----CCCHHHHHH-HH
Q 001146 599 VLAGRKTG--GYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP----EVDSETRKM-FI 669 (1140)
Q Consensus 599 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~-~~ 669 (1140)
+|+|+..+ .+.+|+|.+||.+... ...++.++||+|+|.++|.+||+||+.|++.++.+. ..+++++++ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 2468999999987643 234567999999999999999999999998877543 233444333 35
Q ss_pred HHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEE
Q 001146 670 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 748 (1140)
Q Consensus 670 ~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~ 748 (1140)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|+|+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999999888999999999999999999999999999999999999999999999999864 999999
Q ss_pred EecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCCCCcccceeeccchhhhh---------
Q 001146 749 TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQEL--------- 819 (1140)
Q Consensus 749 ~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~--------- 819 (1140)
++|||+.+++++||++++|++ |+++|+|++ +++.+||+++| + .||++.|||||++|+++.+++.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG-~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG-F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC-C-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 999998889999999999985 899999997 57899999995 4 6999999999999998764321
Q ss_pred -hhcccHHHHHhhcHHHHHHHHHHHhhCCCC---------------CCCCCCCCCCccCcchHHHHHHHHHHHHHHhhcC
Q 001146 820 -ALGIDFTEHYKRSDLYRRNKALIEDLSRPP---------------PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRN 883 (1140)
Q Consensus 820 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 883 (1140)
....++++.|++|+.+++..+.++...... ...+.....+.+..|+++|+++|++|+++++|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 123478899999988776655444321110 0001112234678899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHhcCCCCChH
Q 001146 884 PPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGI 963 (1140)
Q Consensus 884 ~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 963 (1140)
|.++..|+++++++|+++|++||+++++ ++++++|.|++||++++.++.++.++. .+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAILFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcceeeeccccccCHH
Confidence 9999999999999999999999999863 567899999999999999999887764 456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001146 964 PWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLW 1043 (1140)
Q Consensus 964 ~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1043 (1140)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccC---C---------------------C---CCHH
Q 001146 1044 NVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD---T---------------------G---ETVK 1096 (1140)
Q Consensus 1044 ~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~---~---------------------~---~~~~ 1096 (1140)
++|+||++|+++||+||+|++|+||++|+|||++.|||++.+++|.. . | .++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999998887741 0 1 1456
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001146 1097 QFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1137 (1140)
Q Consensus 1097 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1137 (1140)
+|+...||++.+|+|+|++||++|+++|+++++++++|+++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88877899999999999999999999999999999999874
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-92 Score=923.31 Aligned_cols=593 Identities=24% Similarity=0.394 Sum_probs=499.5
Q ss_pred CCCcEEEEEeEEEEEecCchh-----------------h-hcc---cccCceeeeeCceEEEeCceEEEEeCCCCCChHH
Q 001146 537 FEPHSLTFDEVVYSVDMPEEM-----------------K-VQG---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 595 (1140)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~---~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKST 595 (1140)
.+..+++|+|++......... . ..+ .++.+++||+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 346789999999876521100 0 001 1224578999999999999999999999999999
Q ss_pred HHHHHhcCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC-------CCCHHHH--
Q 001146 596 LMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-------EVDSETR-- 665 (1140)
Q Consensus 596 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-------~~~~~~~-- 665 (1140)
|||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++.+||+||+.|+++++.+. +...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999987642 458999999998755444678999999999999999999999998876321 1111111
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 666 ----------------------KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 666 ----------------------~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCcCCCCC
Q 001146 724 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 802 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 802 (1140)
||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++ |+++|+||+ +++.+||+++| + +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCCC
Confidence 999999999999999976 5899999999998899999999999985 899999997 57899999995 4 69999
Q ss_pred CCcccceeeccchhhhh------------hhcccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcchHHHHH
Q 001146 803 YNPATWMLEVSAASQEL------------ALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFV 870 (1140)
Q Consensus 803 ~npad~~l~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 870 (1140)
.|||||++|+++..++. ....++++.|++|+.+++..+.++.........+.....++|..+++.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 99999999998864321 112467889999987766544433211111111111123458899999999
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhHH
Q 001146 871 ACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTV 950 (1140)
Q Consensus 871 ~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 950 (1140)
.|++|+++.++|||..+..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccch
Confidence 9999999999999999999999999999999999999986544444566788999999998888777664 667899999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 001146 951 FYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHH 1030 (1140)
Q Consensus 951 ~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1140)
|+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCccc-c--cCCCCCHHHHHHhhcCCCC
Q 001146 1031 IAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDK-K--MDTGETVKQFLKDYFDFKH 1107 (1140)
Q Consensus 1031 ~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 1107 (1140)
+|+.+++++++++++|+||++|+++||+||+|++|+||++|+++|+++|||.+..+. + +....+.|+.+++.+|+..
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~ 758 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCc
Confidence 999999999999999999999999999999999999999999999999999776543 1 1112334555558899975
Q ss_pred C--chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001146 1108 D--FLGVVAAVLVVFAVLFGFLFALGIKMFNF 1137 (1140)
Q Consensus 1108 ~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1137 (1140)
+ |.|+++++|+||+++|+++++++++|++.
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4 67999999999999999999999999873
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-87 Score=811.89 Aligned_cols=564 Identities=26% Similarity=0.462 Sum_probs=501.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
.+..+|+|+|+-++||+++.++||+||||||||++|+|..+.. ...|+|.+||.+.++...++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 4457999999999999999999999999999999999975532 235799999998876444788999999999999999
Q ss_pred HHHHHHHHHHccCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEe
Q 001146 644 IYESLLFSAWLRLSPE----VDSETRK-MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 718 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~----~~~~~~~-~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlD 718 (1140)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++++||++|+...||+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2567899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhhCCCCc
Q 001146 719 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQ 797 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~~~~~~ 797 (1140)
|+|+|||+.++.++++.||++++. +.|.+++.|||+.+++++||+|++|.+ |+++|+||+ .++++||+++| +
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 999999999999999999999864 899999999999999999999999996 899999998 46899999995 4
Q ss_pred CCCCCCCcccceeeccchhhhh-----------hhc-ccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcch
Q 001146 798 KIKDGYNPATWMLEVSAASQEL-----------ALG-IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSS 865 (1140)
Q Consensus 798 ~~~~~~npad~~l~~~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1140)
.||+..++|||+.++++..++. ... .++.+.|.+++.+++....++.......+.+......+|..++
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999998833221 111 4789999999998887655543332222333334456789999
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 001146 866 WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 945 (1140)
Q Consensus 866 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 945 (1140)
|.|++.|+.|.++.+.||..++..++++.+++|+++|++||+.+. .+..+.+.|.|++||++++..++.+.++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999982 4566788999999999999999998887 4456
Q ss_pred hhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001146 946 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1025 (1140)
Q Consensus 946 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1140)
+.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||++++++||.+++++++...|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhCCCcccccCCCC------------
Q 001146 1026 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGE------------ 1093 (1140)
Q Consensus 1026 ~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef~~~~~~~~~~~~------------ 1093 (1140)
+++...|+.++++.+++..+++||+||.++||+||+|++|+||+.|++|+++.|||++.+.+|.+.|+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999973211
Q ss_pred ------------CHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001146 1094 ------------TVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1138 (1140)
Q Consensus 1094 ------------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1138 (1140)
.+.+|++..|++++.|.|+++||++||.++|.++..+++.|++.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 346778888889999999999999999999999999999999853
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-77 Score=726.61 Aligned_cols=688 Identities=20% Similarity=0.234 Sum_probs=421.6
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..-+|||||||||||||||++||+||+|||||||||++||..|+++|++ +++++||+||| ||++|++++|+|
T Consensus 483 vge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~-~~~grTTivVa---HRLStIrnaD~I 557 (1228)
T KOG0055|consen 483 VGE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK-ASKGRTTIVVA---HRLSTIRNADKI 557 (1228)
T ss_pred ccC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHH-hhcCCeEEEEe---eehhhhhccCEE
Confidence 564 4455999999999999999999999999999999999999888888876 77899999999 999999999999
Q ss_pred EEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhHH
Q 001146 82 ILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 161 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 161 (1140)
+||++|++||+|+|+||++. .+.+.-+.+....+..++. .+.++. ..++.....+.+.......
T Consensus 558 ~v~~~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~----~~~~~~~s~~~s~~~~~~~ 621 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAED-EEEEES----LKEERSRSLKSSSSSPSLS 621 (1228)
T ss_pred EEEECCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhc-cccccc----hhhhhhhcccccccccccc
Confidence 99999999999999999961 1333333332211111000 000000 0000000000000000000
Q ss_pred Hhh-cCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-------HHH---hccc
Q 001146 162 DEL-RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY-------MTL---FLRT 230 (1140)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~-------g~~---f~~~ 230 (1140)
... ....... ............ .......++|.++.++++|.+.++..+.+++.|... +.+ |+..
T Consensus 622 ~~~~~~~~~~~-~~~~e~~~~~~~---~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~ 697 (1228)
T KOG0055|consen 622 RGSNRSNLLSV-KPEGEDPEEPVS---EEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP 697 (1228)
T ss_pred CCccccccccc-cccccccccccc---cccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC
Confidence 000 0000000 000000000000 000233466778888888888777777766655443 222 2222
Q ss_pred CCCCCccccccchhhHHHHHHHHHHHhhh--HHH--HHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHH
Q 001146 231 KMHKDTVTDGGIFAGATFFAITMVNFNGF--SEI--SMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 306 (1140)
Q Consensus 231 ~~~~~~~~~~~~~~g~~f~~~~~~~~~~~--~~~--~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~ 306 (1140)
+ .+.+......++++|..++...+... +.. ....+......|...+ +.++..++.+|+.
T Consensus 698 ~--~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F-----------~~ll~qd~~wFD~---- 760 (1228)
T KOG0055|consen 698 D--DDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMF-----------RALLRQEVGWFDD---- 760 (1228)
T ss_pred C--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHcCCCcccCC----
Confidence 2 12222223347888877776555332 111 1122222333333322 2445555555542
Q ss_pred hhhhhccCccCchhHHHHHHHHHHHH-----HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchh
Q 001146 307 FLSYYVVGYDSNAGRFFKQYALLLGV-----NQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWW 381 (1140)
Q Consensus 307 ~i~Y~~~gl~~~~~~f~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~ 381 (1140)
-+++ ++...++...... ..-...+...++++...+.+|+.++|-+.++.+.+..+++-..-+ .-
T Consensus 761 --------~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~--~~ 829 (1228)
T KOG0055|consen 761 --------PENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYL--QK 829 (1228)
T ss_pred --------Cccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 2345 7666666543222 112223344455555566778888877766555543333210000 00
Q ss_pred hhhhhhC---HHHHHHHHHHHhhcCCCccccccCCCCcchHHHHHhhcCc-----cccchhhHHHHHHHHHHHHHHH-HH
Q 001146 382 KWAYWCS---PLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-----FAHEYWYWLGLGALFGFVLLLN-FA 452 (1140)
Q Consensus 382 ~w~~~is---p~~y~~~a~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~ 452 (1140)
+++...+ --.|...+.+++|...+..+ ....+....+++.+.- ...........++.+++...+. +.
T Consensus 830 ~~~~~~~~~~~~~~~ea~~iA~eai~NIrT----V~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~ 905 (1228)
T KOG0055|consen 830 KFLKGFSKDDKKAYEEASKIAIEAVSNIRT----VAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFV 905 (1228)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11244455555555432110 0001111122211110 0000111222345555554333 44
Q ss_pred HHHHHhhcCCCCCCccceeecccccccccccCCCccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCC--C
Q 001146 453 YTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK--K 530 (1140)
Q Consensus 453 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 530 (1140)
|+++++|.... ..++...... .-.++....+++..+++..++.|+..+++.++...+...+.++..+. .
T Consensus 906 ~A~~f~~G~~L-------i~~g~~~~~~--~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~ 976 (1228)
T KOG0055|consen 906 YALSFWYGARL-------ISNGEMTFED--VFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDST 976 (1228)
T ss_pred HHHHHHHhHHH-------HhcCCcCHHH--HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 56667774221 1111111100 00122334455666677778999999999999999999887664433 2
Q ss_pred CCcccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEE
Q 001146 531 KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 610 (1140)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~ 610 (1140)
.+...+...+.++++||+|+||.+|+ .+||+|+|+++++|+.+||||||||||||++.+|...++ +..
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsRP~----------~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~ 1044 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTRPD----------VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDA 1044 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCCCC----------chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 33334556789999999999998764 457999999999999999999999999999999976555 669
Q ss_pred EEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHcCCcccc
Q 001146 611 GNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-----KMFIDEVMELVELNPLR 682 (1140)
Q Consensus 611 G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~ 682 (1140)
|.|.+||.+++. ..+|+++|.|.|+|.+|. -|++||+.|+. . +.+.++. .+.+++.+ .+|.+-.
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~----~vs~~eIi~Aak~ANaH~FI--~sLP~Gy 1116 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E----EVSEEEIIEAAKLANAHNFI--SSLPQGY 1116 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C----CCCHHHHHHHHHHhhhHHHH--hcCcCcc
Confidence 999999999865 457899999999999986 79999999981 1 1333321 12222222 2567788
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 762 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 762 (1140)
||.+|..|. +||||||||++||||+++||+||||||+||+||+++++.|+++|++.. .|||.|+++|+++ ..+.+|
T Consensus 1117 DT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD 1192 (1228)
T KOG0055|consen 1117 DTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNAD 1192 (1228)
T ss_pred cCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCC
Confidence 999998775 599999999999999999999999999999999999999999999864 5999999999987 478899
Q ss_pred eEEEEecCCEEEEECCCC
Q 001146 763 ELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 763 ~v~~l~~gg~~~~~g~~~ 780 (1140)
.|.++++ |+++..|+-+
T Consensus 1193 ~I~Vi~~-G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1193 VIAVLKN-GKVVEQGTHD 1209 (1228)
T ss_pred EEEEEEC-CEEEecccHH
Confidence 9999985 8999999863
No 11
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-62 Score=593.38 Aligned_cols=442 Identities=27% Similarity=0.470 Sum_probs=371.1
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||+...||||||||||||||.+|+.||+|||||||||||||.+|.+|++.|+++|++ |+|||+||||||++++++||+
T Consensus 162 ~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~ 240 (613)
T KOG0061|consen 162 LIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDK 240 (613)
T ss_pred eecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhH
Confidence 4788888999999999999999999999999999999999999999999999999976 999999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCch--hhhhhhhhcCCCCccCCHHHHHHHHHhchhhh
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK--DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQ 158 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 158 (1140)
+++|++|+++|+|+.+++++||++.|++||++.||+||++|+.+.+ .+.... ..+..+..+.++..+...
T Consensus 241 l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 312 (613)
T KOG0061|consen 241 LLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEE--------AVRIAKLINKFSQTDNLK 312 (613)
T ss_pred hhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHh--------HHHHHHHhhhccccchhh
Confidence 9999999999999999999999999999999999999999988743 111000 000011111111000000
Q ss_pred hHHHhhcCCccCccccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 001146 159 KISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 238 (1140)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~ 238 (1140)
+............ . ........+++.|+..+.+|.++...|++.....|.++.+++++++|.+||+.+.+...+
T Consensus 313 ~~~~~~~~~~~~~----~-~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~- 386 (613)
T KOG0061|consen 313 KTLEALEKSLSTS----K-KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI- 386 (613)
T ss_pred hhHHHHhhhcccc----c-ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH-
Confidence 0000000000000 0 000011578999999999999999999999999999999999999999999997655443
Q ss_pred cccchhhHHHHHHHHHHHhhhH-HHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCccC
Q 001146 239 DGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 317 (1140)
Q Consensus 239 ~~~~~~g~~f~~~~~~~~~~~~-~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl~~ 317 (1140)
.++.|++|+++....+..+. .+..+..+++++.||+..++|+.++|++|+.+.++|+.++.+++|+.++|||+|+++
T Consensus 387 --~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~ 464 (613)
T KOG0061|consen 387 --QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNP 464 (613)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCc
Confidence 36789999998888776554 688889999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHH
Q 001146 318 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 397 (1140)
Q Consensus 318 ~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~ 397 (1140)
+..+|+.+++...+....+.+++.++++..++...|.++++++.+++++|+||+++.+.||.||+|+.|+|+.+|++|++
T Consensus 465 ~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l 544 (613)
T KOG0061|consen 465 GLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEAL 544 (613)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCccccccC--CCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001146 398 VANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 461 (1140)
Q Consensus 398 ~~ne~~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 461 (1140)
+.|||.+....|... ..+...+.+++...++... ..|.++.++.++.++++.+.++++++..
T Consensus 545 ~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 545 LINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998633333332 3456678889988888654 3688999999999999999999988853
No 12
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.4e-60 Score=581.36 Aligned_cols=440 Identities=19% Similarity=0.301 Sum_probs=352.9
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||+...++||||||||++|||+|+++|+||+|||||||||+.++..+++.|+++++ .++|||+++|||+.++++.||+
T Consensus 198 ~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhce
Confidence 368888999999999999999999999999999999999999999999999999875 6899999999999999999999
Q ss_pred eEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhH
Q 001146 81 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 160 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (1140)
|++|++|+++|+|+++++++||+++|++||+++|||||++|+++.+...+...+.+ .....+.+.+.|++... ++.
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~ 352 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSERE---KPNVKQSLVASYNTLLA-PKV 352 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccc---cchHHHHHHHHHHhhcc-HHH
Confidence 99999999999999999999999999999999999999999987543211000000 00112333344432111 000
Q ss_pred HHhhc---CCccCc------cccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccC
Q 001146 161 SDELR---TPFDKS------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTK 231 (1140)
Q Consensus 161 ~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~ 231 (1140)
..... ...... ...........+..+++.|+..+++|.++. +|++....+|+++.+++|+++|++||+.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00000 000000 000000011123467889999999999887 78888778999999999999999999874
Q ss_pred CCCCccccccchhhHHHHHHHHHHH-hhhHHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhh
Q 001146 232 MHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSY 310 (1140)
Q Consensus 232 ~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y 310 (1140)
. .+.+++.|++|+++.+..+ ..+..+..+..+|++++||+..++|++++|++|+.+.++|+.++.+++|+.|+|
T Consensus 432 --~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 432 --F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred --H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 2 2345678999998777555 456778888899999999999999999999999999999999999999999999
Q ss_pred hccCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHH
Q 001146 311 YVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPL 390 (1140)
Q Consensus 311 ~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~ 390 (1140)
||+|++.++++|+.+++...+...++++++.+++++++++.+|+.+++++.+++++|+||+++ +||.||+|++|+||+
T Consensus 507 ~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 507 WMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTT 584 (659)
T ss_pred EcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHhhcCCCcc-----ccccC-----CCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 391 TYAQNAIVANEFLGHSW-----KKFTQ-----DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 460 (1140)
Q Consensus 391 ~y~~~a~~~ne~~~~~~-----~~~~~-----~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 460 (1140)
+|++++++.|||.+... .|... ..+...+...+. ....|.+++++.++.++++++.++++++.
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999976432 23111 112122222222 23468899999999999999999988764
No 13
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.3e-60 Score=581.40 Aligned_cols=447 Identities=22% Similarity=0.388 Sum_probs=373.7
Q ss_pred CCCCC-ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc
Q 001146 1 MVGDE-MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 1 ~VG~~-~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD 79 (1140)
.||++ ..|+|||||||||+|||+|+++|+||||||||||||+.++..+++.|+++++ .|+|||+++|||+.++++.||
T Consensus 157 ~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D 235 (617)
T TIGR00955 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFD 235 (617)
T ss_pred ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhc
Confidence 36765 3789999999999999999999999999999999999999999999999875 589999999999999999999
Q ss_pred ceEEecCCeEEEecCcchHHHHHHhCCCCCCCCCChhHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhh
Q 001146 80 DIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK 159 (1140)
Q Consensus 80 ~I~vL~~G~vvy~G~~~el~~~F~~~G~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 159 (1140)
+|++|++|+++|+|+++++++||+++|++||++.||+||++++++....... ......+++.+.++.++...+
T Consensus 236 ~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~ 308 (617)
T TIGR00955 236 KIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRD 308 (617)
T ss_pred eEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHH
Confidence 9999999999999999999999999999999999999999998764322110 011123445555555544333
Q ss_pred HHHhhcCCccC--cc-ccccccccccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 001146 160 ISDELRTPFDK--SK-SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDT 236 (1140)
Q Consensus 160 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~ 236 (1140)
........... .. ..........+..+++.|+..+++|.++..+|++..+..++++.+++|+++|.+|++.+.+..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~ 388 (617)
T TIGR00955 309 MLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG 388 (617)
T ss_pred HHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 32222111000 00 0000011223457789999999999999999999999999999999999999999998755433
Q ss_pred cccccchhhHHHHHHHHHHHhhh-HHHHHhhhcchhHHHhhcCCCCChhhHHHhHHHHhhhHHHHHHHHHHhhhhhccCc
Q 001146 237 VTDGGIFAGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGY 315 (1140)
Q Consensus 237 ~~~~~~~~g~~f~~~~~~~~~~~-~~~~~~~~~~~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~l~~~i~Y~~~gl 315 (1140)
..++.|++|+++....+..+ ..+..+..+|++++||+..++|++++|++|+.+.++|+.++.+++|.+|+|||+|+
T Consensus 389 ---~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl 465 (617)
T TIGR00955 389 ---VQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGL 465 (617)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccC
Confidence 34568889998887777654 45667778999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHH
Q 001146 316 DSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQN 395 (1140)
Q Consensus 316 ~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~va~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~ 395 (1140)
+.++++|+.+++...+...++.+++.++++++++..+|..+++++.+++++|+||+++.++||.||+|++|+||++|+++
T Consensus 466 ~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~ 545 (617)
T TIGR00955 466 RSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNE 545 (617)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcc-ccccC---CCCcchHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001146 396 AIVANEFLGHSW-KKFTQ---DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 460 (1140)
Q Consensus 396 a~~~ne~~~~~~-~~~~~---~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 460 (1140)
+++.|||.+..+ .|... ..|...|.++++.+++... +.|.+.++++++.++|.+++++++++.
T Consensus 546 al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 546 GLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred HHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988664 33211 1244568899998888654 458899999999999999999998873
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-58 Score=608.15 Aligned_cols=219 Identities=20% Similarity=0.318 Sum_probs=181.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-----------
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----------- 607 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~----------- 607 (1140)
.+.++|+||+|+|+.++ ++++|+|+||+|+||+.+||+||||||||||+++|.|.+++.
T Consensus 1163 ~g~I~f~nVsF~Y~~~~----------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRP----------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred CceEEEEEEEEECCCCC----------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 35799999999997421 235899999999999999999999999999999999987651
Q ss_pred -----------------------------------------eEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCC
Q 001146 608 -----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 608 -----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 643 (1140)
+.+|+|.+||.++.. ..+|+.++||+|++.+|+ .|
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gT 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-cc
Confidence 148999999998754 567889999999999985 89
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
++|||.++. ++.++++ ++++++..+ |.+-.||.+|..| ..||||||||++|||||+++|+||+
T Consensus 1312 IreNI~~g~-----~~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILL 1381 (1466)
T PTZ00265 1312 IYENIKFGK-----EDATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILL 1381 (1466)
T ss_pred HHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999862 2334333 444555444 3455688898655 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecC---CEE-EEECCCC
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQE-IYVGPLG 780 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g---g~~-~~~g~~~ 780 (1140)
||||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |++ +..|+.+
T Consensus 1382 LDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 999999999999999999999986 36899999999985 46789999999862 674 4789853
No 15
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.6e-55 Score=579.15 Aligned_cols=214 Identities=22% Similarity=0.307 Sum_probs=179.5
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.|+|+||+|+|+. +..++|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.
T Consensus 1235 ~g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~ 1301 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGC 1301 (1622)
T ss_pred CCcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCE
Confidence 357999999999951 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+|+++++|||++.+|+ .|+||||.+.. ..++++ +.++++..++. +-.|+.+|.
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC
Confidence 8754 467889999999999997 59999997631 223332 45555555553 345777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|+||+||||||+||++++..+++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1371 ~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD 1446 (1622)
T ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE
Confidence 54 4699999999999999999999999999999999999999999999875 4899999999986 355689999998
Q ss_pred cCCEEEEECCCCc
Q 001146 769 RGGQEIYVGPLGR 781 (1140)
Q Consensus 769 ~gg~~~~~g~~~~ 781 (1140)
+ |+++.+|++++
T Consensus 1447 ~-G~IvE~Gt~~e 1458 (1622)
T PLN03130 1447 A-GRVVEFDTPEN 1458 (1622)
T ss_pred C-CEEEEeCCHHH
Confidence 5 89999999853
No 16
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.6e-55 Score=581.59 Aligned_cols=213 Identities=21% Similarity=0.280 Sum_probs=178.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++|+||+|+|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.
T Consensus 1232 ~g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~ 1298 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDC 1298 (1495)
T ss_pred CCcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCE
Confidence 357999999999941 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.+ ..+|+++++|||++.+++ .|+||||.+.. +.++++ +.++++..++.+ -.|+.+|.
T Consensus 1299 di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1299 DVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred EhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 8754 467889999999999997 59999997531 233332 456666665543 45677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|+||+||||||+||+++++.+++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1368 ~G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~ 1443 (1495)
T PLN03232 1368 GG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS 1443 (1495)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 54 4699999999999999999999999999999999999999999999864 5899999999986 355699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 1444 ~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1444 S-GQVLEYDSPQ 1454 (1495)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
No 17
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-52 Score=548.07 Aligned_cols=223 Identities=28% Similarity=0.412 Sum_probs=193.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|.. +++.+|+|+|+.|++||++||+||||||||||+|+|+|...+ .+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4899999998841 125699999999999999999999999999999999998774 489999999887
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.+++.+||+|++.+.+.++. ...++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 233344566789999999998888765 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 78899999999985 89999998
Q ss_pred CCcchhHHHHHH
Q 001146 779 LGRHSCHLISYF 790 (1140)
Q Consensus 779 ~~~~~~~~~~~f 790 (1140)
+ +++...|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 7 3455544
No 18
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.3e-52 Score=551.21 Aligned_cols=213 Identities=18% Similarity=0.234 Sum_probs=179.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++|+||+++|+.. ...+|+|+|++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.
T Consensus 1282 ~g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~ 1348 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGL 1348 (1522)
T ss_pred CCcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCE
Confidence 3679999999999621 13589999999999999999999999999999999998774 5899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+|+.+++|||++.+|+ .|+||||... ...++++ +.++++..++. +-.|+.+|.
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~------~~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPF------SQYSDEE----VWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccC-ccHHHHcCcc------cCCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC
Confidence 8764 467889999999999998 5999999621 1233333 45666666654 345777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|+||+||||||+||++++..+++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1418 ~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD 1493 (1522)
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 44 4699999999999999999999999999999999999999999998864 5899999999986 456789999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++.+|+++
T Consensus 1494 ~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1494 K-GEVAEFGAPS 1504 (1522)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
No 19
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-51 Score=473.42 Aligned_cols=225 Identities=25% Similarity=0.318 Sum_probs=185.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc-
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK- 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~- 620 (1140)
++++|++..|..++... ....+...+++||||++++||++||+|+||||||||.++|+|+..+ .+|.|.++|.+.
T Consensus 281 l~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~ 356 (539)
T COG1123 281 LSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLD 356 (539)
T ss_pred eEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccc
Confidence 67788888876543111 0112456789999999999999999999999999999999998874 589999999762
Q ss_pred -Cc---ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCc
Q 001146 621 -KQ---ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 693 (1140)
Q Consensus 621 -~~---~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~ 693 (1140)
+. ...++.+-+|+|++ .+.|.+||++++.-........ ...++++++.++++..+|.. ..+.+ .++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~e 429 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHE 429 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 11 23456677888876 6789999999998776544322 24566778999999999985 34433 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|++|||||.||+..+.++.++|+++.++ |.|.|+++||++ -+..+||||++|++ |+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~ 507 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GR 507 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999999999865 999999999987 57889999999995 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
+|..||.
T Consensus 508 iVE~G~~ 514 (539)
T COG1123 508 IVEEGPT 514 (539)
T ss_pred EEEeCCH
Confidence 9999975
No 20
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.7e-51 Score=546.27 Aligned_cols=213 Identities=24% Similarity=0.271 Sum_probs=179.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.|+|+||+|+|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.
T Consensus 1306 ~G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~ 1372 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGR 1372 (1560)
T ss_pred CCeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCE
Confidence 357999999999952 223589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+|+.+++|||++.+|+ .|++|||... ...+++ .+.++++..++.+ -.|+.+|.
T Consensus 1373 di~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge 1441 (1560)
T PTZ00243 1373 EIGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGIDSRVLE 1441 (1560)
T ss_pred EcccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCcccccccccC
Confidence 8754 467899999999999987 5999999532 123333 3567777777654 35777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.| ..||||||||++|||||+++ |+||+||||||+||+++.+.+++.|++.. +++|+|+++|+++ ....||+|++|
T Consensus 1442 ~G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL 1517 (1560)
T PTZ00243 1442 GG-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVM 1517 (1560)
T ss_pred Cc-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEE
Confidence 44 56999999999999999995 89999999999999999999999998864 4899999999985 56789999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |+++..|+++
T Consensus 1518 d~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1518 DH-GAVAEMGSPR 1529 (1560)
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
No 21
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.7e-48 Score=511.00 Aligned_cols=211 Identities=19% Similarity=0.250 Sum_probs=178.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
+.++|+||+++|+. +.+.+|+|+||+|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 57999999999962 22468999999999999999999999999999999999865 37999999998
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 689 (1140)
+.. ..+|+.++||||++.+|+ .|+||||.... ..+++ .+.++++.+++.+ -.|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~tde----ei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWSDE----EIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCCHH----HHHHHHHHCCCHHHHHhCccccccccccC
Confidence 754 457889999999999998 59999995321 22332 3567777777643 357777764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
| ..||||||||++|||||+++|+||+||||||+||..+...+++.|++.. +++|||+++|+++ ....+|||++|++
T Consensus 1351 G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 G-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred C-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 4 5699999999999999999999999999999999999999999999864 4799999999985 4566999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 8999999974
No 22
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.9e-48 Score=472.20 Aligned_cols=225 Identities=22% Similarity=0.295 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.... .. +...+++.+|+|+||++++||+++|+||||||||||+++|+|..+ .+|+|.++|.++.
T Consensus 276 l~~~~l~~~~~~~~~-~~-~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~ 350 (529)
T PRK15134 276 LDVEQLQVAFPIRKG-IL-KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLH 350 (529)
T ss_pred ccccCcEEEeecCcc-cc-ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEcc
Confidence 667888888741100 00 000023468999999999999999999999999999999999864 3799999998763
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. .+++.++|++|++ .+++.+||+||+.+....+.. .....+.+++++++++.+++. +..+.. ++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 21 1345689999996 478889999999886543211 122333445678999999996 355554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++ |
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-G 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57789999999985 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|++
T Consensus 503 ~i~~~~~~ 510 (529)
T PRK15134 503 EVVEQGDC 510 (529)
T ss_pred EEEEEcCH
Confidence 99999875
No 23
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.2e-48 Score=483.02 Aligned_cols=214 Identities=22% Similarity=0.312 Sum_probs=176.3
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
..+.|+|+|++.+|. + +-..||+|||++|+|||.+||+|..|||||||+++|-+... +.+|+|.|||
T Consensus 1135 ~~G~I~f~~~~~RYr--p---------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDg 1201 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYR--P---------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDG 1201 (1381)
T ss_pred CCCeEEEEEeEEEeC--C---------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcC
Confidence 357899999999994 1 23458999999999999999999999999999999998766 3589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g 687 (1140)
.++.. .++|++++.+||||.+|. .|+|.||.=. .+.++++ +-+++|..+|.+ ..|+.+.
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf------~e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPF------DEYSDDE----IWEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceec-CccccccCcc------cccCHHH----HHHHHHHhChHHHHhhCCcCCCceec
Confidence 99865 568899999999999987 7999998521 1223332 345555554432 3455554
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+ +...+|-||||-+++||||+++++||+|||+|++.|+++-..|+++||+.- +++|||.+.|+.+. +.+ +|||++|
T Consensus 1271 e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVl 1346 (1381)
T KOG0054|consen 1271 E-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVL 1346 (1381)
T ss_pred C-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEe
Confidence 4 345799999999999999999999999999999999999999999999854 48999999999974 544 6999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |+++.+|+|.
T Consensus 1347 d~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1347 DA-GRVVEFDSPA 1358 (1381)
T ss_pred eC-CeEeecCChH
Confidence 96 8999999984
No 24
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-48 Score=475.00 Aligned_cols=227 Identities=21% Similarity=0.232 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+.+... . ....+.+.+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~-~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL-L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc-c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 38899999998521100 0 0001124699999999999999999999999999999999998763 489999999876
Q ss_pred Cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
.. ..+++.++||+|++ .+++.+||.|++.+....+. ....++.+++++++++.+||. +..+.. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 32 12456799999997 58889999999987654321 112334456688999999995 455554 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.++|||+++|++
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~- 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL- 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999986 67889999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 540 G~iv~~g~~~ 549 (623)
T PRK10261 540 GQIVEIGPRR 549 (623)
T ss_pred CEEEEecCHH
Confidence 8999999864
No 25
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-47 Score=411.12 Aligned_cols=228 Identities=24% Similarity=0.304 Sum_probs=192.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-++.+|+...++.++..-.+ ......++++||+++++||.++|+|.||||||||=.+|.++..+ +|+|.++|++
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred ceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 346777888777765432111 12446799999999999999999999999999999999987764 4999999998
Q ss_pred cCc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 620 KKQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 620 ~~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
+.. +..|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+..+|.+++.++++++||++. +... ..
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~--~r~R--YP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPA--TRNR--YP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChh--Hhhc--CC
Confidence 753 34677889999998 578999999999887766543 46778899999999999999863 2222 35
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.|||||||++||||++.+|++++||||||+||-.-+.+++++|+++.+ .|.+-++++||+. -+..+||+|++|.+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~- 502 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD- 502 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-
Confidence 78999999999999999999999999999999999999999999999975 4899999999987 57889999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|++|..||.
T Consensus 503 GkiVE~G~~ 511 (534)
T COG4172 503 GKIVEQGPT 511 (534)
T ss_pred CEEeeeCCH
Confidence 899999996
No 26
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-47 Score=465.81 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=177.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc-Ccc-
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 619 (1140)
++++|++++|+... .+++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcc
Confidence 77889998884100 1224689999999999999999999999999999999998763 48999996 532
Q ss_pred --cCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccc
Q 001146 620 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 686 (1140)
Q Consensus 620 --~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~ 686 (1140)
+.. ...++.++|++|++.+++.+||+||+.+...+. ...++.+++++++++.+++.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999998899999999998764321 122333456788999999975 33444
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 3579999999999999999999999999999999999999999999999764 899999999986 6788999999
Q ss_pred EEecCCEEEEECCC
Q 001146 766 LMKRGGQEIYVGPL 779 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~ 779 (1140)
+|++ |+++..|++
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999875
No 27
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-48 Score=465.72 Aligned_cols=222 Identities=21% Similarity=0.306 Sum_probs=179.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. +++++|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.
T Consensus 260 l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECC
Confidence 6778888766310 123589999999999999999999999999999999998652 13799999998754
Q ss_pred c----ccccceEEEeccCC---CCCCCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 622 Q----ETFARISGYCEQND---IHSPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++ .+++.+||.||+.+........ ..+.++.++.++++++.+++. +..+..+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 403 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI----- 403 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----
Confidence 2 12345689999985 4778899999998753211110 112233345678999999996 4566653
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G 481 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-G 481 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999888999999999986 67889999999985 8
Q ss_pred EEEEECCCCc
Q 001146 772 QEIYVGPLGR 781 (1140)
Q Consensus 772 ~~~~~g~~~~ 781 (1140)
+++..|++++
T Consensus 482 ~i~~~~~~~~ 491 (506)
T PRK13549 482 KLKGDLINHN 491 (506)
T ss_pred EEEEEecccc
Confidence 9999998765
No 28
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=388.32 Aligned_cols=215 Identities=25% Similarity=0.355 Sum_probs=191.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+.+| ++.++|+|||++|++||+++|+|||||||||||+||.++..+ .+|+|.++|.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEecc
Confidence 7889999887 356799999999999999999999999999999999998774 4899999997653
Q ss_pred ----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
....|+.+|+|+|+..+||++||.||+..+...- .+.++++.++...++++.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346888999999999999999999999875432 2345666677788999999999998886 3579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||||+|||||+.+|+++|+|||||+|||+...++.+.+++++++|.|.||+||++. ...+.+|||++|+ +|+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEee-CCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999987 5788999999998 48999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 863
No 29
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=464.72 Aligned_cols=214 Identities=20% Similarity=0.303 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.+. .+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 266 l~~~~l~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~ 328 (510)
T PRK09700 266 FEVRNVTSRDR---------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDIS 328 (510)
T ss_pred EEEeCccccCC---------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECC
Confidence 77888876431 269999999999999999999999999999999998764 4799999998763
Q ss_pred c----ccccceEEEeccC---CCCCCCCCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHHHHcCCc-cccccccc
Q 001146 622 Q----ETFARISGYCEQN---DIHSPFVTIYESLLFSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVG 687 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~---~~~~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~g 687 (1140)
. ...++.++|++|+ ..+++.+||+||+.+....+ ... . ......++.++++++.+++. +..++.+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 407 (510)
T PRK09700 329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI- 407 (510)
T ss_pred CCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-
Confidence 2 1234578999998 45788899999998753211 000 0 11222334578899999996 6666654
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+. ++.+.||++++|
T Consensus 408 ----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l 482 (510)
T PRK09700 408 ----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVF 482 (510)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEE
Confidence 569999999999999999999999999999999999999999999999878999999999986 678899999999
Q ss_pred ecCCEEEEECCC
Q 001146 768 KRGGQEIYVGPL 779 (1140)
Q Consensus 768 ~~gg~~~~~g~~ 779 (1140)
++ |+++..++.
T Consensus 483 ~~-G~i~~~~~~ 493 (510)
T PRK09700 483 CE-GRLTQILTN 493 (510)
T ss_pred EC-CEEEEEecC
Confidence 85 799998876
No 30
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.6e-47 Score=457.20 Aligned_cols=204 Identities=21% Similarity=0.318 Sum_probs=170.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCC---CCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 641 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 641 (1140)
+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 59999999999999999999999999999999998764 479999999876421 2345699999995 57788
Q ss_pred CCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 642 VTIYESLLFSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+||.||+.+....... .....++.++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321100 0112233345678999999995 5566653 56999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
||||+|||+.++..+.+.|++++++|.|||++||++. ++.+.||++++|++ |+++..|++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999999999999878999999999986 67889999999985 89999998764
No 31
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.4e-47 Score=457.45 Aligned_cols=221 Identities=18% Similarity=0.281 Sum_probs=178.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. .+++.+|+|+||++++||+++|+||||||||||+++|+|..++ +.+|+|.++|+++.
T Consensus 258 l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 258 LEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVD 326 (500)
T ss_pred EEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECC
Confidence 677888776521 0123489999999999999999999999999999999998753 13799999998764
Q ss_pred c----ccccceEEEeccCC---CCCCCCCHHHHHHHHHH--ccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 001146 622 Q----ETFARISGYCEQND---IHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 691 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 691 (1140)
. ...++.++|++|+. .+++.+||+||+.+... ............++.++++++.+++.+ ..++.+
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 401 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI----- 401 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----
Confidence 2 12356789999995 57889999999987532 110001122333456789999999964 456553
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++|||++ ++.++||++++|++ |
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G 479 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-G 479 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 569999999999999999999999999999999999999999999999888999999999986 68889999999985 7
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..++.+
T Consensus 480 ~i~~~~~~~ 488 (500)
T TIGR02633 480 KLKGDFVNH 488 (500)
T ss_pred EEEEEEccc
Confidence 999888654
No 32
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.2e-46 Score=452.68 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=167.6
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCC---CCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 641 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 641 (1140)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 48999999999999999999999999999999998764 479999999876431 1245689999984 47888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+|+.||+......+..........++.++++++.+++. +..++.+ +.|||||||||+|||+|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111010011222334578999999996 5666653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
|+|||+.++..+.+.|++++++|.|||+++|+++ ++.++||++++|++ |+++..|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999878999999999986 68889999999985 89999987754
No 33
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-46 Score=452.72 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=170.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc----ccccceEEEeccCC---CCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPF 641 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 641 (1140)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 69999999999999999999999999999999998763 48999999987532 12346789999986 48888
Q ss_pred CCHHHHHHHHHHccC-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 642 VTIYESLLFSAWLRL-SPE--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+|+.||+.+...... ... ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532111 001 11222335678899999994 5666654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcc
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 782 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~ 782 (1140)
||||+|||+.++..+.+.|++++++|.|||++|||++ ++.+.||++++|++ |++++.|++++.
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 9999999999999999999999888999999999986 68899999999985 799999988653
No 34
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-45 Score=445.60 Aligned_cols=215 Identities=19% Similarity=0.292 Sum_probs=168.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 388999999884 23589999999999999999999999999999999996532 1479999999764
Q ss_pred Cc----ccccceEEEeccCCCCCCC--CCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 001146 621 KQ----ETFARISGYCEQNDIHSPF--VTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 691 (1140)
.. ...++.++|++|++.+++. .|+++++.+.... ........ +.++.++++++.+++.+ ..+..+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 1235679999998765433 5777766543211 11111122 22446789999999986 666653
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHH-hhceEEEEec
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 769 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~v~~l~~ 769 (1140)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5799999999999999999999999999999999999999999999998766 47999999986 5655 5899999985
Q ss_pred CCEEEEEC
Q 001146 770 GGQEIYVG 777 (1140)
Q Consensus 770 gg~~~~~g 777 (1140)
|+++..-
T Consensus 479 -G~i~~~~ 485 (490)
T PRK10938 479 -GDIYRYV 485 (490)
T ss_pred -CceEEee
Confidence 7877654
No 35
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=443.47 Aligned_cols=216 Identities=17% Similarity=0.246 Sum_probs=171.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 250 ~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEEC
Confidence 37788887642 1379999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCC---CCCCCCCHHHHHHHHHH--c-cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 001146 621 KQE----TFARISGYCEQND---IHSPFVTIYESLLFSAW--L-RLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLP 689 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~ 689 (1140)
... ..++.++|++|++ .+++.+|+.+|..+... . ...........++.++++++.+++. +..+..
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 388 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ---- 388 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc----
Confidence 431 1245689999985 36788888877433210 0 1000012223345578889999985 344554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.++|||+++|++
T Consensus 389 -~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~ 466 (491)
T PRK10982 389 -IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN 466 (491)
T ss_pred -cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999999888999999999986 68889999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..++++
T Consensus 467 -g~i~~~~~~~ 476 (491)
T PRK10982 467 -GLVAGIVDTK 476 (491)
T ss_pred -CEEEEEEccc
Confidence 8999887764
No 36
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-45 Score=423.38 Aligned_cols=250 Identities=25% Similarity=0.409 Sum_probs=209.8
Q ss_pred CCccccccccchhhhhhhhhccCCCCCCcccC-CCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEE
Q 001146 505 TDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP-FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 583 (1140)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ 583 (1140)
.+.+++..++.+.++..+.++..+.. |...| ...+.|+|+||+|+||.+|+ .+||+|+||+|+|||++
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~----------~~Vlk~lsfti~pGe~v 497 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPD----------VPVLKNLSFTIRPGEVV 497 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCC----------chhhcCceeeeCCCCEE
Confidence 45566777888888888888776655 65555 35678999999999998753 45799999999999999
Q ss_pred EEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 001146 584 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660 (1140)
Q Consensus 584 al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 660 (1140)
|||||||+||||+.++|...++ |.+|+|.+||.|+++ ..+|+++|+|.|||.+|. -||+||+.|+.. +.
T Consensus 498 ALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~ 569 (716)
T KOG0058|consen 498 ALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NA 569 (716)
T ss_pred EEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CC
Confidence 9999999999999999987766 569999999999865 457899999999999986 799999999854 33
Q ss_pred CHHHH-----HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001146 661 DSETR-----KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735 (1140)
Q Consensus 661 ~~~~~-----~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~ 735 (1140)
++++. .+.+++.+. ++.+-.||.+|..|. +||||||||++|||||++||+||||||+||+||++++..|+++
T Consensus 570 t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 570 TDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence 33332 233344444 566778999998775 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 736 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 736 l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|.++.+ ++|||+++|+++ ..+.+|+|+++++ |+++..|..+
T Consensus 647 L~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h~ 687 (716)
T KOG0058|consen 647 LDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTHD 687 (716)
T ss_pred HHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccHH
Confidence 998765 699999999986 5788999999985 8999999753
No 37
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-45 Score=385.55 Aligned_cols=219 Identities=23% Similarity=0.324 Sum_probs=194.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+..|... ..+...+|+|||++|++||+++|+|+||||||||++++.++..| .+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 6889999887531 12345799999999999999999999999999999999998774 5899999997764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. +..|+.+|+++|+..++...||.||+.|...+.. .+++++++++.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 3467899999999999999999999999988763 56788899999999999999888876 36799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|+|||+|||||+|||++...+++.|+++.++ |.||+++||+++ -+.+.||||.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999754 999999999986 47889999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999864
No 38
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.1e-45 Score=369.66 Aligned_cols=231 Identities=26% Similarity=0.364 Sum_probs=200.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..+++++|++++ +.++|++|||++|++||+++|+||||+|||||||+|.|+.++ .+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcc
Confidence 358999999876 467899999999999999999999999999999999999884 48999999998
Q ss_pred cCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCC
Q 001146 620 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~ 692 (1140)
+.. ...++++|+++|...+|..+||+||+.|..+ .....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 643 2457789999999999999999999998653 23346667777777888899999876 5544 46
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+|||||+||+++|||++.||++|++||||+||||.++..+-++++++.+. |.|++++|||.+ +++..+||+++|.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 89999999999999999999999999999999999999999999999866 999999999997 69999999999996 8
Q ss_pred EEEEECCCCcc----hhHHHHHHhhCC
Q 001146 772 QEIYVGPLGRH----SCHLISYFEAIP 794 (1140)
Q Consensus 772 ~~~~~g~~~~~----~~~~~~~f~~~~ 794 (1140)
+++++|++++. ...+.+||....
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 99999998642 345778887653
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-45 Score=372.50 Aligned_cols=215 Identities=26% Similarity=0.366 Sum_probs=193.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++|+||++.|. ++.+++|+|++|++||+++++|||||||||+||+|.++..+ .+|+|.+||+++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 68999998874 45689999999999999999999999999999999998874 5899999999876
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~LSg 696 (1140)
. ..+|+.+|||-|.-.+||++||.||+.+-..+. +.++++.+++++++++.+||++ +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999999877665 4567788889999999999975 55654 578999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||+|||.+||||+.+|++||+|||+++|||.++.++++.++++.++ |+|||++|||.+ +.+++.||+++|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 999999999997 7899999999998 589999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
+++|++
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 999853
No 40
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-45 Score=375.83 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+.+++++++|. ..++|+|+|++|++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 478899988875 25689999999999999999999999999999999998874 589999999987
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. .....++||+|++.++|.+||+||+.++...+. ..+++++++++++++.+||.+..|.. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 234568999999999999999999999987653 34556667899999999999998876 4689999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
||+|||||+.+|++|+||||+++||+.++..+++.|.++.+ .++||+++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999998864 5899999999997 788899999999863
No 41
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=377.36 Aligned_cols=216 Identities=26% Similarity=0.436 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.. + ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5899999999952 2 58999999999999999999999999999999999877 4589999999987
Q ss_pred CcccccceEEEeccCC---CCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQETFARISGYCEQND---IHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
....-+..+|||||.. .-+| +||+|.+..+...+. -....+++ ++.++++++.+|+.+.+|..+| +||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 6544457899999954 3345 799999988743332 12223333 5678999999999999999875 599
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||+|||-|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+|+.|+ +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999998 6899999999997 48999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|++++
T Consensus 219 ~G~~~~ 224 (254)
T COG1121 219 SGPPEE 224 (254)
T ss_pred ccChhh
Confidence 999975
No 42
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-44 Score=437.18 Aligned_cols=266 Identities=27% Similarity=0.392 Sum_probs=213.2
Q ss_pred ccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCC--CCcccCCCCcEEEEEeEEEEEecCchhhhcccccCc
Q 001146 489 LSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK--KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 566 (1140)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1140)
..+.++...++.....+...++..++..+++..+..+..+.. .+.......+.++|+||+|+||.+|+
T Consensus 296 ~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpd---------- 365 (1228)
T KOG0055|consen 296 SVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPD---------- 365 (1228)
T ss_pred ehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCc----------
Confidence 344566666666666666677788888888777655543322 22233345678999999999998753
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 643 (1140)
..||+|+|+.|++||.+||+|||||||||++++|.+.++ |.+|+|.+||.++.. +.+|..+|.|.|+|.+|. .|
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~t 442 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TT 442 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-cc
Confidence 347999999999999999999999999999999998877 569999999998764 457889999999998775 89
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH-------cCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
++||+.|+. ++.+.++ ++++.+. ..|.+-.||.+|..++. ||||||||++|||||++||+|||
T Consensus 443 I~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILL 512 (1228)
T KOG0055|consen 443 IRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILL 512 (1228)
T ss_pred HHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEE
Confidence 999999862 2333332 2222222 24566778999987764 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
||||||+||+++++.|+++|+++. +|+|.|+++|+++ .+ +.+|++++|++ |+++..|..+|
T Consensus 513 LDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 513 LDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTHDE 573 (1228)
T ss_pred ecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCHHH
Confidence 999999999999999999998864 5999999999987 34 55999999996 89999999864
No 43
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.1e-44 Score=380.18 Aligned_cols=228 Identities=26% Similarity=0.385 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 478999999995 45799999999999999999999999999999999998774 489999999987
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. +.+.+.++||||.....+.+||+|-+.++..-+... ....++.++.++++++.+++.+.+++.+ .+|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 456789999999998888899999999875432111 1112333447899999999999999875 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||+.|||||+++|++|+||||||.||...+.++++.+++++ ++|+|||+++||++ ....+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEe
Confidence 99999999999999999999999999999999999999999998 45999999999998 57899999999985 89999
Q ss_pred ECCCCcc--hhHHHHHH
Q 001146 776 VGPLGRH--SCHLISYF 790 (1140)
Q Consensus 776 ~g~~~~~--~~~~~~~f 790 (1140)
.|++.+. .+.+.+.|
T Consensus 220 ~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 220 QGTPEEVLTEENLREVY 236 (258)
T ss_pred ecCcchhcCHHHHHHHh
Confidence 9998642 33455555
No 44
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-44 Score=364.51 Aligned_cols=220 Identities=26% Similarity=0.327 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+..|+ +++++|+|||++|++||++||+|||||||||||++|.|..+ +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 488999999986 35679999999999999999999999999999999999876 4589999999765
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC------CCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 621 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 621 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
.. +.+|+.+||++|...+.|.+||.+|+..+..-+.+ .-.++++ +..+-++++.+|+.+.+-.+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~d-k~~Al~aLervgi~~~A~qra-- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED-KAQALDALERVGILDKAYQRA-- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHH-HHHHHHHHHHcCcHHHHHHHh--
Confidence 43 34678899999999999999999999876433221 1233444 345678899999998887764
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..|||||+|||+|||||+.+|+++|.|||+++|||.+++.+++.|+++.+ +|.|||++.||.+ -..++|||++-|
T Consensus 146 ---~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl 221 (258)
T COG3638 146 ---STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGL 221 (258)
T ss_pred ---ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEe
Confidence 46999999999999999999999999999999999999999999999975 5999999999987 368899999999
Q ss_pred ecCCEEEEECCCCcc
Q 001146 768 KRGGQEIYVGPLGRH 782 (1140)
Q Consensus 768 ~~gg~~~~~g~~~~~ 782 (1140)
++ |+++|+||+.+.
T Consensus 222 ~~-G~ivfDg~~~el 235 (258)
T COG3638 222 KA-GRIVFDGPASEL 235 (258)
T ss_pred cC-CcEEEeCChhhh
Confidence 85 899999999754
No 45
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.8e-44 Score=395.40 Aligned_cols=215 Identities=30% Similarity=0.441 Sum_probs=191.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++..|. .++.+|+||||++++||++||+||||||||||+|+|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 367888888874 136799999999999999999999999999999999998874 589999999887
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.++|.+||+||+.|.+.++.... +..+++++++++.++|.+..+.. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 4567889999999999999999999999999886532 34556789999999999855544 46799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++||+||+++|++|||||||+||||.++..+.+.|++++++| +||+++||+++ ++.++||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 78889999999985 8999999
Q ss_pred CC
Q 001146 778 PL 779 (1140)
Q Consensus 778 ~~ 779 (1140)
++
T Consensus 220 ~~ 221 (293)
T COG1131 220 TP 221 (293)
T ss_pred CH
Confidence 76
No 46
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-43 Score=366.68 Aligned_cols=209 Identities=27% Similarity=0.416 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++.+||+..|... .....+|+|+|++|++||++||+|||||||||||++|.|...+ .+|.+.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 4578888877532 1225799999999999999999999999999999999998774 5899999998764
Q ss_pred c------c-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCc
Q 001146 622 Q------E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSG 693 (1140)
Q Consensus 622 ~------~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~~~~~ 693 (1140)
. . -.++.+|||+|+..+.|++||.||+.+...+... ...++++.++++++.+||.+..+ .. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 1 2346799999999999999999999987765432 22245667889999999986665 43 467
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++++.||||.+||+.+.+.|++.++++.++ |+|+|++|||+ ++...|||++.|.+ |+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 99999999997 57899999999996 55
No 47
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-43 Score=424.18 Aligned_cols=198 Identities=18% Similarity=0.263 Sum_probs=164.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 489999999884 23589999999999999999999999999999999998764 4799999873
Q ss_pred CcccccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 001146 621 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgG 697 (1140)
+.++|++|++. +.+.+|++|++.+.. .. . . .++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G-D---DEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C-c---cHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 556799999986421 11 1 1 123467899999984 455554 3579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 776 (1140)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||++. .+.+.||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999876 359999999986 67788999999986 6777 77
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 864
No 48
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.5e-42 Score=417.68 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 489999999884 24589999999999999999999999999999999998764 479999843 2
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGq 698 (1140)
..+||++|++ .+++.+||+||+.+...... .... +...+++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 67888999999988643221 1111 122456889999864 34554 35799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999998862 4 8999999986 6788999999998767776 455
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
No 49
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-44 Score=351.45 Aligned_cols=215 Identities=27% Similarity=0.367 Sum_probs=192.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++..+++.+|+. ..++++||||+++.||+++|+|||||||||+|++|++...| .+|.|+++|.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccc
Confidence 456677777742 22379999999999999999999999999999999998874 4899999998864
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...|+.+|.++.+..++..||++|||.|.+++. +....+.+++++++.+.++|.++.|+.+| ++|.|+|
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 3 457889999998889999999999999998875 34556667889999999999999999875 6999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|||+|||||+++|++++|||||||||..+.+.+.+.++++.++|++||+++|.+. ++..+||+|++|++ |++++.|++
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 9999999999999999999999999999999999999999888999999999986 78899999999996 899999997
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 218 ~ 218 (245)
T COG4555 218 E 218 (245)
T ss_pred H
Confidence 5
No 50
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.3e-41 Score=413.03 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=164.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-
Confidence 489999999874 24589999999999999999999999999999999998763 489999844 2
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGq 698 (1140)
..++|++|++ .+++.+||.|++.+...... .... +...+++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999988643211 1111 122457899999864 345543 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999873 3 8999999986 5778899999998666776 445
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
No 51
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-43 Score=387.00 Aligned_cols=216 Identities=28% Similarity=0.392 Sum_probs=194.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+.+|.. ..+|+|+|++|++||+++|+||||||||||||+|+|+.. +.+|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg~-------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFGS-------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcCC-------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 5889999988841 127999999999999999999999999999999999887 4589999999988
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
+. ...+|.+++|+|+..++|+|||+||+.|+.+.+ ...+++.+++++++.+.+++.+..|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 345678999999999999999999999998876 345677788899999999999999987 367999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+++|+++|||||.|+||...+..+...|+++.++ |.|+|.+|||.. |...++||+++|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999975 8899999999999 589999999
Q ss_pred CCc
Q 001146 779 LGR 781 (1140)
Q Consensus 779 ~~~ 781 (1140)
+.+
T Consensus 218 p~e 220 (338)
T COG3839 218 PLE 220 (338)
T ss_pred hHH
Confidence 853
No 52
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=370.33 Aligned_cols=206 Identities=29% Similarity=0.449 Sum_probs=185.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc---ccCc-ccccceEEEeccCCCCCCC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSPF 641 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~~ 641 (1140)
...+++|||++|+.||++||+|||||||||||++|+|+..+ ..|.|.+||. +.+. ....|.+|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 45689999999999999999999999999999999999874 4899999999 5444 2345789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 721 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 721 (1140)
|||.||+.|+.+.+ ....++.+.+.+++++++.++|++..+.. +.+|||||||||++||||+..|++||||||+
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998777 33345667778899999999999998876 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 722 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
++||..-++++.+.|+++.++ |.|++++|||+. ++++++|||++|++ |++.-.||+++
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 999999999999999999866 999999999987 89999999999996 89999999853
No 53
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-43 Score=389.07 Aligned_cols=218 Identities=26% Similarity=0.384 Sum_probs=195.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+.+|. +..+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|++
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEE
Confidence 4689999998873 46789999999999999999999999999999999998874 48999999999
Q ss_pred cCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 620 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 620 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
+.. ...+|.+|+|+|+..+||+|||+||+.|+.+++ ....+++.+++++++++.++|.+..++. +.+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHH
Confidence 865 345788999999999999999999999998743 2344566778899999999999988876 46899999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
+|||++||||+.+|++||||||.|+||..-+.+++..|+++.++ |.|.|++|||.. +.+.+.|||++|++ |++.-.|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~g 219 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVG 219 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecC
Confidence 99999999999999999999999999999999999999998754 999999999986 78999999999985 8999999
Q ss_pred CCCc
Q 001146 778 PLGR 781 (1140)
Q Consensus 778 ~~~~ 781 (1140)
++++
T Consensus 220 tP~e 223 (352)
T COG3842 220 TPEE 223 (352)
T ss_pred CHHH
Confidence 9864
No 54
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.4e-43 Score=341.96 Aligned_cols=214 Identities=25% Similarity=0.317 Sum_probs=186.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+|+||+..|+. .+++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 689999998863 3568999999999999999999999999999999999766 45899999999875
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. .-+|+++|+|+||..+.+..||+||+.|..... ..+..+.++++.++++.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 136789999999999999999999999987765 344566778899999999999888765 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||+|||+||||++.+|++|+.||||-+|||..+.++++++.++.+.|.||++.||+.+ -+-.+-.|++.|++ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999999999999999964 24455678888875 89987
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
+...
T Consensus 218 d~~~ 221 (223)
T COG2884 218 DESR 221 (223)
T ss_pred cccc
Confidence 6543
No 55
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2e-41 Score=410.76 Aligned_cols=211 Identities=20% Similarity=0.232 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|.. ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~~--------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLGD--------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEECC--------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 4889999988741 148999999999999999999999999999999998764 47999875
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999875321 111 123578999999987777654 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|+++||+. .+..++||+++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5778899999996 478877775
Q ss_pred Ccc---hhHHHHHHhhC
Q 001146 780 GRH---SCHLISYFEAI 793 (1140)
Q Consensus 780 ~~~---~~~~~~~f~~~ 793 (1140)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 13345666666
No 56
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.3e-38 Score=408.97 Aligned_cols=217 Identities=22% Similarity=0.356 Sum_probs=188.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~ 992 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGK 992 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCE
Confidence 347999999998841 235699999999999999999999999999999999998774 4899999998
Q ss_pred ccCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 619 PKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 619 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
++.. ...++.+||++|++.+++.+||+||+.|.++++. ...++.+++++++++.+||.+..+..+ +.|||
T Consensus 993 dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSG 1064 (2272)
T TIGR01257 993 DIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSG 1064 (2272)
T ss_pred ECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 8743 2346779999999999999999999999876653 223344556889999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||+||+||+.+|++|+|||||+|||+.+++.+.+.|++++ +|+|||++||+++ ++..++||+++|++ |+++..
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~ 1141 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCS 1141 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999985 5999999999986 67789999999985 899999
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|++
T Consensus 1142 Gs~ 1144 (2272)
T TIGR01257 1142 GTP 1144 (2272)
T ss_pred cCH
Confidence 986
No 57
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=345.09 Aligned_cols=219 Identities=22% Similarity=0.308 Sum_probs=186.9
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC---CcCceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~---~~~~~~~G~i~~~ 616 (1140)
..++.+|+++.|. ++.+|+|||+.|++++++|++|||||||||||+++... .++-.++|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 3588999999884 45689999999999999999999999999999999874 3334678999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPG 690 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~ 690 (1140)
|+++.. ..+|+.+|+|+|.|.-|| +|++||+.|+.++....+ ++.++.++..++...|.+. .|.+..+
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 998743 357899999999999999 999999999988764322 5566778888888888653 3333222
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+++ +.-|||++||.+. ...+..|+..++..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 24699999999999999999999999999999999999999999999997 5789999999986 57888999999996
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++.+|+.+
T Consensus 224 G~LvE~g~T~ 233 (253)
T COG1117 224 GELVEFGPTD 233 (253)
T ss_pred cEEEEEcCHH
Confidence 7999999973
No 58
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-41 Score=412.36 Aligned_cols=197 Identities=22% Similarity=0.363 Sum_probs=161.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 489999999884 24589999999999999999999999999999999998764 4799998641
Q ss_pred CcccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHH
Q 001146 621 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgG 697 (1140)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.. ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34556677776531 1 11 112345788999999963 455553 569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 776 (1140)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+..+||++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999886 34 9999999986 57789999999985 7887 78
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
No 59
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.2e-40 Score=409.51 Aligned_cols=201 Identities=23% Similarity=0.331 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||++.|+ ++++|+|+||+|++|++++|+|||||||||||++|+|..++ .+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 488999999884 24589999999999999999999999999999999998763 4799988 4322
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGq 698 (1140)
.++|++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..++.+ +.|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788899999998753211 0111 123467888888885 3455543 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++|||.. .+...||++++|.++|++. |.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999875 459999999975 5778999999997335665 455
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
+
T Consensus 522 ~ 522 (635)
T PRK11147 522 G 522 (635)
T ss_pred C
Confidence 4
No 60
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.6e-40 Score=405.36 Aligned_cols=200 Identities=19% Similarity=0.277 Sum_probs=158.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 489999999884 123589999999999999999999999999999999998764 4799988652
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqr 699 (1140)
..++|++|+. .+.+++.++.........+ ... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 2445666664332111111 111 234678999999973 44443 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~ 778 (1140)
|||+|||+|+.+|++|+|||||+|||+.+...+.+.|++. .| |||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 34 9999999986 57788999999985 7887 7776
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
No 61
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.7e-41 Score=378.01 Aligned_cols=216 Identities=26% Similarity=0.403 Sum_probs=189.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|. ++.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEe
Confidence 3589999999884 24589999999999999999999999999999999998774 48999999998
Q ss_pred cCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 620 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 620 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
+.. ...++.+||++|++.+++.+||+||+.|.+..+. .+..+.+++++++++.+++.+..++.+ +.||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2356789999999999999999999998765542 233344456789999999988888765 569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++||+||+++|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.++|||+++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999987 78899999999985 8999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 221 ~~~ 223 (306)
T PRK13537 221 APH 223 (306)
T ss_pred CHH
Confidence 863
No 62
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=339.79 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=191.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+..+|+..+| +++++++|||+++++||+++|+|||||||||.+.++.|...++ +|.|.+||.++
T Consensus 4 ~L~a~~l~K~y-------------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSY-------------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhh-------------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCccc
Confidence 45666666555 4567999999999999999999999999999999999988754 89999999988
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
+.. .-|..+||+||++..|..|||+||+......+.. +...++++++++++++++++.++++... ..|||
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSG 142 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSG 142 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----ccccc
Confidence 653 2345689999999999999999999987766532 2233566677899999999999999863 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||+.|||||+.+|+.++||||++|.||.+..++++.++.++++|..|++|-|..+ +...+|||.+++++ |+++.+
T Consensus 143 GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~ 220 (243)
T COG1137 143 GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAE 220 (243)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEec
Confidence 9999999999999999999999999999999999999999999999999999999987 78999999999996 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|.+++
T Consensus 221 G~p~e 225 (243)
T COG1137 221 GSPEE 225 (243)
T ss_pred CCHHH
Confidence 99864
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=9.4e-42 Score=329.35 Aligned_cols=212 Identities=25% Similarity=0.343 Sum_probs=182.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
+..++|.|+|...+ =.+++.|++||++||+||||||||||||+|+|...| .+|+|.+||++..
T Consensus 2 l~L~~V~~~y~~~~---------------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHLP---------------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcce---------------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecC
Confidence 45678888886422 247889999999999999999999999999998774 4899999999875
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ....|-+++++||.++|.++||.+|+.++..-.+ +.+. +.+++++.++..+||.++.+++. .+|||||||
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~a-~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQ 136 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLNA-EQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQ 136 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccCH-HHHHHHHHHHHHhChhhHhhhCc-----cccCchHHH
Confidence 4 3456778999999999999999999988753221 2233 34566899999999999988874 469999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||++||+|+++-+||+||||+|+|||.-+.+...++.++++ ++.|++++||+|+ ++..+.|+++++++ |++.+.|+.
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999999999999999999999999999999999974 5899999999997 79999999999996 899999986
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
.
T Consensus 215 ~ 215 (231)
T COG3840 215 Q 215 (231)
T ss_pred H
Confidence 3
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.2e-40 Score=377.12 Aligned_cols=218 Identities=22% Similarity=0.304 Sum_probs=188.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. .+.+++|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6899999998521 1124699999999999999999999999999999999998774 4899999999864
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|... ++||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23668999999999999999999999876543 2344555667889999999998877653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.++||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 57789999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|++.
T Consensus 221 ~~g~~~ 226 (343)
T TIGR02314 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
No 65
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=381.01 Aligned_cols=216 Identities=25% Similarity=0.352 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 378999999883 124589999999999999999999999999999999998774 589999999887
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++||+|++.++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..+... ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999986543 2344555667899999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998765 999999999986 78999999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 74
No 66
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.5e-40 Score=379.34 Aligned_cols=215 Identities=25% Similarity=0.360 Sum_probs=189.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 488999999884 24589999999999999999999999999999999998774 489999999886
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..+.. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 223567999999999999999999999986543 234555667889999999999888875 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 78899999999995 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 74
No 67
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-41 Score=342.45 Aligned_cols=218 Identities=26% Similarity=0.324 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++.+|+++.|+... ...++|+||||++.+||+++|+|+||||||||.++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 478999999986321 112589999999999999999999999999999999998774 489999999876
Q ss_pred Ccc----cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQE----TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... .+++.+.+|+||+ .+.|..||++.|.-.... ...++.++ ++.++++.+||.+..-.+ .+.+|
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R----~P~eL 142 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDR----RPHEL 142 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhc----Cchhc
Confidence 543 3577899999997 578999999988766543 23333333 388999999997633222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+.+|++|+||||||+||+..+.++++.|.++.++ +.|.|+++||.+ -+..+|||+++|++ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999754 789999999987 58899999999996 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..++.+
T Consensus 221 vE~~~~~ 227 (252)
T COG1124 221 VEIGPTE 227 (252)
T ss_pred EEeechh
Confidence 9999974
No 68
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=377.08 Aligned_cols=215 Identities=24% Similarity=0.381 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 589999999884 24589999999999999999999999999999999998874 489999999887
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
... ..++.++||+|+..++|++||+||+.|+...+ ...+++++++++++++.+++.+..+.. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 542 23567999999999999999999999987543 234555667889999999999887765 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 78899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 74
No 69
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-40 Score=378.03 Aligned_cols=216 Identities=24% Similarity=0.331 Sum_probs=189.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEE--EEEEEcC
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISG 617 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~--G~i~~~g 617 (1140)
..++++||+++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g 68 (362)
T TIGR03258 4 GGIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIAD 68 (362)
T ss_pred eEEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECC
Confidence 4689999999884 23589999999999999999999999999999999998774 47 9999999
Q ss_pred cccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 618 YPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 618 ~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.++.. ...++.++||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ++|||
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSg 140 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSG 140 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCH
Confidence 87643 223567999999999999999999999987543 2344555667899999999998888764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++
T Consensus 141 Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~ 218 (362)
T TIGR03258 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLA 218 (362)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999876 799999999986 68899999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 219 ~~g~~~ 224 (362)
T TIGR03258 219 AHGEPQ 224 (362)
T ss_pred EEcCHH
Confidence 999874
No 70
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-40 Score=358.67 Aligned_cols=214 Identities=24% Similarity=0.357 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 36789998884 23589999999999999999999999999999999998764 4899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ..+++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+++.+..++.+ +.||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 2345679999999999999999999988654221 1233444556788999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 57888999999985 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
+.|++
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 99885
No 71
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.3e-40 Score=372.82 Aligned_cols=215 Identities=27% Similarity=0.381 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 589999999884 24589999999999999999999999999999999998774 489999999986
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.+++.+||+||+.+....+. ....+.+++++++++.++|.+..++.+ +.|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2356789999999999999999999997655432 223333455778999999998888765 4699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 78899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 256 ~~ 257 (340)
T PRK13536 256 PH 257 (340)
T ss_pred HH
Confidence 63
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=351.93 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=189.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++|+|+. +..+|+|+|+++++||.++|+||||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3789999999862 14689999999999999999999999999999999998874 479999999986
Q ss_pred C----cccccceEEEeccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 K----QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~----~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ....++.+|||+|++.. +-.-||.|.+.|+.... ..+.++.+++++++++.+++.+..+.. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 5 34578899999999743 44579999999987543 345566788899999999999987765 46799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+||.+|+.+|++|+|||||||||+..++.+++.++++.++ |+|+|++|||.+ .+.+++||+++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 699999999987 68889999999995 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
++|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99986
No 73
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8.7e-40 Score=372.95 Aligned_cols=218 Identities=25% Similarity=0.384 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|+++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378999999884 24589999999999999999999999999999999998764 489999999886
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
... ..++.++||+|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..+..+ .+|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 432 2346799999999999999999999998653211 12334455667899999999988777653 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998765 899999999986 68899999999985 8999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 220 ~~~ 222 (353)
T PRK10851 220 TPD 222 (353)
T ss_pred CHH
Confidence 874
No 74
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-39 Score=349.61 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=178.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcC
Confidence 36789998874 24589999999999999999999999999999999998763 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|++||+.+..... ....+..++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 3 223467999999999999999999998865432 1223334456788999999987766653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999876 4899999999986 57889999999985 7888765
No 75
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.6e-39 Score=372.28 Aligned_cols=215 Identities=22% Similarity=0.327 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999884 24589999999999999999999999999999999998774 489999999986
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..+..+ .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999986543 2344455567899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 78899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
+.
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 74
No 76
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-39 Score=351.00 Aligned_cols=208 Identities=23% Similarity=0.320 Sum_probs=176.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 678999998841 123589999999999999999999999999999999998764 4899999998763
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..+... ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998755331 223334456789999999987776653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999986 57788999999985 55
No 77
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.2e-39 Score=388.16 Aligned_cols=222 Identities=28% Similarity=0.425 Sum_probs=184.0
Q ss_pred ccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE
Q 001146 534 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 613 (1140)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i 613 (1140)
..+...+.++++||+|.|... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|..++ .+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceE
Confidence 345567899999999999632 23589999999999999999999999999999999999874 58999
Q ss_pred EEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCccccccc
Q 001146 614 TISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSL 685 (1140)
Q Consensus 614 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~ 685 (1140)
.+||.+... ..+|+.+|||+||+.++. -|++||+.++. +..+.++..+ -+++.++ ++..-.|+.
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~ 602 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEEIIEAAQLAGAHEFIE--NLPMGYDTP 602 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHH--hcccccccc
Confidence 999998754 568899999999998875 79999998753 2334333211 1122222 344556788
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
+|..| .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +|+|+|+++|+++ ..+.+||++
T Consensus 603 v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 88755 5799999999999999999999999999999999999999999999875 4899999999986 588999999
Q ss_pred EEecCCEEEEECCCCc
Q 001146 766 LMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~~~ 781 (1140)
+|+ +|+++.+|+.++
T Consensus 679 Vl~-~Gkiv~~gs~~e 693 (709)
T COG2274 679 VLD-QGKIVEQGSHEE 693 (709)
T ss_pred Ecc-CCceeccCCHHH
Confidence 998 489999999743
No 78
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=371.83 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 589999999874 24589999999999999999999999999999999998774 489999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.+|||+|++.++|++||.||+.|+...+ ..+..+.+++++++++.++|.+..+... ++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999986543 2344555667899999999998877653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 78899999999985 89999999
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 74
No 79
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=331.14 Aligned_cols=214 Identities=26% Similarity=0.402 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++..| ++.++|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++++
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 6788888777 346799999999999999999999999999999999998773 4899999999986
Q ss_pred c----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCH
Q 001146 622 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~LSg 696 (1140)
. +..+..++||||....||.|||+|||..++..+.. ++..+..++++.+.+- |.+..+.+.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 4 23567899999999999999999999988655422 1111222667777764 5555566543 5999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+++||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 779999999876 57889999999985 89999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|+.++
T Consensus 218 ~G~~~e 223 (237)
T COG0410 218 SGTAAE 223 (237)
T ss_pred ecCHHH
Confidence 999754
No 80
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.5e-39 Score=364.87 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.++|++|++.+++.+||+||+.+..... ..+..+.+++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234677999999999999999999998755432 1233333455778999999988777764 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67889999999985 89999998
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 6
No 81
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-39 Score=348.44 Aligned_cols=213 Identities=29% Similarity=0.382 Sum_probs=181.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 46789998874 24589999999999999999999999999999999998764 4899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2345679999999999999999999998754431 223334456789999999987767653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998876 899999999986 67888999999985 89999887
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 5
No 82
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-39 Score=347.41 Aligned_cols=216 Identities=25% Similarity=0.369 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc
Confidence 3678999887411 0114689999999999999999999999999999999998764 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
. .++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+++.+..+..+ +.||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 35679999999999999999999988754331 223334456789999999987766653 5799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECCC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 779 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~ 779 (1140)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ +|+++..++.
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999864 4899999999986 57889999999985 4899988775
No 83
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=372.44 Aligned_cols=215 Identities=25% Similarity=0.365 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ...++.++|++|++.++|.+||+||+.|....+ ....++.+++++++++.++|.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 123467999999999999999999999876543 1234445567899999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 74
No 84
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-39 Score=345.06 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchh
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
. ..++.++|++|++.+++.+|++||+.+....+. ....+.++.++++++.+++.+..++. ++.||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHH
Confidence 3 345679999999999999999999988654432 22333445678899999998766654 35799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998777899999999986 57788999999985 7887754
No 85
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.1e-39 Score=368.59 Aligned_cols=204 Identities=25% Similarity=0.303 Sum_probs=179.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cc----cceEEEeccCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDI 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 637 (1140)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++... .. ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 446689999999999999999999999999999999998874 589999999987532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
++|.+||+||+.|..... ..+.+++++++.++++.++|.+..++.. ..|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2345556677899999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999998754 899999999986 68899999999985 8999999864
No 86
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-39 Score=367.25 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=186.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+.. .+++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 6789999998511 1135699999999999999999999999999999999998764 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.++|.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999876543 2234444566889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 67889999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
+.|+++
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
No 87
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.1e-39 Score=345.16 Aligned_cols=211 Identities=26% Similarity=0.398 Sum_probs=179.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..+..+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 32 23457999999999888999999998865432 1233344456788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 67788999999985 7988876
No 88
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.1e-39 Score=364.00 Aligned_cols=202 Identities=27% Similarity=0.381 Sum_probs=177.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEeccCCCCCCCCC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 643 (1140)
++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 35689999999999999999999999999999999998764 48999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
|+||+.+.+.++. ....+.+++++++++.+++.+..++.+ +.||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765442 233334456789999999988777764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 724 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 68889999999985 899999986
No 89
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.4e-39 Score=350.11 Aligned_cols=216 Identities=26% Similarity=0.361 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECC
Confidence 35788988874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
.. . .++.++|++|++.+++.+||+||+.+......... ...++.++.++++++.+++.+..++.
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 140 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP----- 140 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----
Confidence 31 1 23568999999999999999999988754321110 01233445678999999998766665
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~- 218 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ- 218 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-
Confidence 3579999999999999999999999999999999999999999999998777999999999986 67788999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 219 G~i~~~~~~ 227 (236)
T cd03219 219 GRVIAEGTP 227 (236)
T ss_pred CEEEeecCH
Confidence 899999875
No 90
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-39 Score=349.13 Aligned_cols=217 Identities=27% Similarity=0.396 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999999884 24589999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+.++.++++++.+++.+..+..+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245799999999999899999999886543211 00122333456788999999987666653 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999998765 899999999986 57888999999985 8999999
Q ss_pred CC
Q 001146 778 PL 779 (1140)
Q Consensus 778 ~~ 779 (1140)
++
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 86
No 91
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.6e-39 Score=371.02 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 378999999884 24689999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ...++.++||+|++.+++.+||+||+.++...+.. .... ++.+++++++++.+++.+..++.+ ++||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~-----~~LS 141 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPV-----TSLS 141 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 43 34567899999999998899999999886432110 0112 233456889999999998877754 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.++|||+++|++ |+++.
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~ 219 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRA 219 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999987 67899999999985 89999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|++++
T Consensus 220 ~G~~~e 225 (402)
T PRK09536 220 AGPPAD 225 (402)
T ss_pred ecCHHH
Confidence 998753
No 92
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=333.70 Aligned_cols=208 Identities=26% Similarity=0.367 Sum_probs=181.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSP 640 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 640 (1140)
+..++++|||+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|+++... ..+..++--+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 567899999999999999999999999999999999999884 489999999987642 23456788899999999
Q ss_pred CCCHHHHHHHHHHccC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC
Q 001146 641 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~ 711 (1140)
.|||.||+..++..+. +.. .+.++-.++..++++.+||.+.+|...| +||+|||||+.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998765331 111 1234445677899999999999999865 5999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 712 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
|++|+||||.+||.+....++.+.|+++.++ |.||+++.|+++ -++.+||||++|+. |+++..|+|++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~e 236 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEE 236 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHH
Confidence 9999999999999999999999999999874 699999999998 58999999999985 89999999864
No 93
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-38 Score=345.36 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=182.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCccc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 620 (1140)
++|+||++.++... ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 57999999986311 135689999999999999999999999999999999998651 13489999999887
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.....++.++|++|++.+++.+||+||+.+......+.....+.....+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544567789999999999999999999998765432221122222334455 88888887766654 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777999999999985468899999999985 8998765
No 94
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.5e-39 Score=345.63 Aligned_cols=215 Identities=27% Similarity=0.417 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5789999988521 0112589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ..+++.++|++|++.+++.+||+||+.+....+ ....++.++.++++++.+++.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234577999999999999999999998765433 1233344566789999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |+++..|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999998777999999999986 67889999999985 7887654
No 95
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9.3e-39 Score=347.89 Aligned_cols=214 Identities=26% Similarity=0.365 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. . .++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ +.||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 21 1 23568999999999999999999988653321 223334456788999999987766653 579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999998877999999999986 68899999999985 8999998
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+.+
T Consensus 216 ~~~ 218 (232)
T cd03218 216 TPE 218 (232)
T ss_pred CHH
Confidence 864
No 96
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-38 Score=359.10 Aligned_cols=214 Identities=23% Similarity=0.366 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 378999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.+||++|++.+++.+||.||+.+.+.++. ...++.+++++++++.+|+.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345679999999999999999999998776542 223334456789999999998877764 5699999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||++||+||+++|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.++|||+++|++ |++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999986 68899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
.+
T Consensus 216 ~~ 217 (301)
T TIGR03522 216 LD 217 (301)
T ss_pred HH
Confidence 63
No 97
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.3e-39 Score=347.35 Aligned_cols=215 Identities=23% Similarity=0.281 Sum_probs=179.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC-----cCceEEEEEEEc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITIS 616 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~-----~~~~~~G~i~~~ 616 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 36789998874 235899999999999999999999999999999999987 4 458999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ...++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987642 23456799999998888 7999999988754331 11222234567889999999876555320 2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|++ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999876 99999999986 57789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 217 ~i~~~g~~~ 225 (227)
T cd03260 217 RLVEFGPTE 225 (227)
T ss_pred EEEEecCcc
Confidence 999999864
No 98
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7e-39 Score=345.34 Aligned_cols=209 Identities=28% Similarity=0.401 Sum_probs=174.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 4678999988421 0114689999999999999999999999999999999998763 4899999998764
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 622 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... .++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+++.+..+..+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24579999999999999999999998765431 223334456789999999987766653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999999999999976 5899999999986 45 48999999986 55
No 99
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=326.47 Aligned_cols=213 Identities=24% Similarity=0.396 Sum_probs=192.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+++++|+.++ +++.+++|+||+++||++.+++|||||||||++++|.|...+ .+|.|.++|.++
T Consensus 2 ~L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcch
Confidence 36777777654 567899999999999999999999999999999999998874 589999999998
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
+.. .+.+|||.|.+.-++|.+||.|.|.|-+.++ ..+.++.++.++.+++.+++......++ ++||.|++|
T Consensus 67 ~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQ 137 (300)
T COG4152 67 SQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQ 137 (300)
T ss_pred hhh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhH
Confidence 653 4567999999999999999999999999987 4566677778899999999998877764 679999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
++.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|++ |+.|.+|+.
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999999999999999999999999999997 79999999999985 899999997
No 100
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9.4e-39 Score=341.59 Aligned_cols=207 Identities=29% Similarity=0.396 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 36789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+||+||+.+....+. .. +++++++++.+++.+..+..+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---IR----KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2345679999999999999999999988654321 11 234678899999987766653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |+++..|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998777899999999986 57788999999985 7888765
No 101
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-39 Score=350.83 Aligned_cols=218 Identities=26% Similarity=0.314 Sum_probs=179.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEecc
Confidence 357889888741 14589999999999999999999999999999999998763 4899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.+++.+||+||+.+...... ......+..++.++++++.+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 141 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR----- 141 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----
Confidence 2 1245679999999999999999999987532110 00111122345578899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999987 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 221 -G~i~~~~~~~ 230 (241)
T cd03256 221 -GRIVFDGPPA 230 (241)
T ss_pred -CEEEeecCHH
Confidence 8999999864
No 102
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1e-38 Score=344.53 Aligned_cols=215 Identities=25% Similarity=0.390 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 467899988741 114589999999999999999999999999999999998763 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999999989999999988654332 223333456788999999987766653 56999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|++. .+.+.+|++++|++ |+++..|++
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999986 57788999999985 899998876
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 217 ~ 217 (220)
T cd03263 217 Q 217 (220)
T ss_pred H
Confidence 3
No 103
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-39 Score=312.35 Aligned_cols=215 Identities=26% Similarity=0.390 Sum_probs=186.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
+..++++.+|+.. ...+|+|||++|.+||.++++||||||||||||+++|..+| ..|+|.+||.+++
T Consensus 4 l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEecc
Confidence 4556777777532 23489999999999999999999999999999999999874 5899999999886
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
... ..-|.|+|++.++|.+||.||+.|+.+++ ..++.+|++++.+.+..+||.+..+..+ -+||||||||
T Consensus 71 gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQR 140 (259)
T COG4525 71 GPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQR 140 (259)
T ss_pred CCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHH
Confidence 432 23489999999999999999999999887 4678889999999999999998887653 5799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecC-CEEEEECCC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 779 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g-g~~~~~g~~ 779 (1140)
+.|||||+.+|++|+||||+++||.-++++++++|-++. +.|+.++++||+.. +..-+++|+++|+-+ |+++..=|+
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999999998876 45999999999987 566678999999843 688877666
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 220 d 220 (259)
T COG4525 220 D 220 (259)
T ss_pred C
Confidence 3
No 104
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-39 Score=354.78 Aligned_cols=204 Identities=25% Similarity=0.311 Sum_probs=174.3
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---c----ccceEEEeccCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 637 (1140)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 456799999999999999999999999999999999998764 489999999876421 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+++.+||+||+.+..... .....+.++.++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999875432 1223334456788999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999998754 899999999986 57889999999985 8999999763
No 105
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=346.38 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=182.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5789999887421 0113689999999999999999999999999999999998764 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 235679999999999999999999988654331 233334456789999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999985 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98875
No 106
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=354.54 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||++.|+... ...+.+|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 378999999985210 0124689999999999999999999999999999999998764 489999999886
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCC
Q 001146 621 KQ-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVS 692 (1140)
Q Consensus 621 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~~~~ 692 (1140)
.. ...++.+|||+|++. .+...||+||+.|..... ..+.++.+++++++++.+||. +..++. ++
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PF 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cc
Confidence 43 234678999999863 333579999999865432 234455556788999999996 455554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-G 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57788999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13637 222 KCELQGTPR 230 (287)
T ss_pred EEEEECCHH
Confidence 999999863
No 107
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.8e-38 Score=341.23 Aligned_cols=205 Identities=25% Similarity=0.334 Sum_probs=174.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 67899999873 123589999999999999999999999999999999998763 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998754321 223334456789999999987666553 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 99999999999999999999999999999999999999999998777999999999986 67788999999985
No 108
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.5e-38 Score=341.85 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=175.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 357899988741 13589999999999999999999999999999999998763 4899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..++.+ +.||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 2 1245679999999999999999999998754331 233334456789999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.+|++++|++ |+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999986 57778999999985 55
No 109
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.1e-39 Score=340.72 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=170.0
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 623 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 623 (1140)
++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++...
T Consensus 2 ~~~l~~~~~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~ 67 (205)
T cd03226 2 IENISFSYKK------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAK 67 (205)
T ss_pred cccEEEEeCC------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhH
Confidence 5688887741 13589999999999999999999999999999999998764 489999999876444
Q ss_pred cccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 001146 624 TFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 702 (1140)
Q Consensus 624 ~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv 702 (1140)
..++.++|++|++. .+..+|++||+.+..... . . .++.++++++.+++.+..++.+ +.||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHH
Confidence 45567999999974 344679999998764322 1 1 1234788999999988777653 57999999999
Q ss_pred HHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 703 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 703 ~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 9999999999999999999999999999999999998777999999999986 57788999999985 6764
No 110
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.1e-38 Score=345.34 Aligned_cols=215 Identities=22% Similarity=0.331 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57899999874 2458999999999999999999999999999999999876 34899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+||+||+.+...... .....+.++.++++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2345679999999999999999999987642111 1233344456789999999987666653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998777999999999986 57788999999985 899999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+.+
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9863
No 111
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=315.79 Aligned_cols=226 Identities=26% Similarity=0.384 Sum_probs=186.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+.+|++|+.. ++.+|++||++++|||++||+||||||||||||.|+|...++ +|++.+||.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 57889999874 456899999999999999999999999999999999987743 899999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ....+..+..+|+..+-.-.||+|-+.++..-... ..+.++..+..+++++..++.+.+.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 34456678999998876668999999998543211 1222344456788999999988877653 5799999
Q ss_pred HHHHHHHHHHhh------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 699 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 699 rqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||.+||.|+. ++++||||||||+||...+..++++.|+++++|..|+++.||++. ...++||+++|++ ||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999986 456999999999999999999999999999999999999999984 6789999999995 89
Q ss_pred EEEECCCCcc--hhHHHHHH
Q 001146 773 EIYVGPLGRH--SCHLISYF 790 (1140)
Q Consensus 773 ~~~~g~~~~~--~~~~~~~f 790 (1140)
++..|++.+. .+.+...|
T Consensus 219 v~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 219 VIASGSPQDVLTDETLERVY 238 (259)
T ss_pred EeecCCHHHhcCHHHHHHHh
Confidence 9999998642 23344444
No 112
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-38 Score=341.94 Aligned_cols=217 Identities=24% Similarity=0.310 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||++.|+.. ...+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 38899999988521 012468999999999999999999999999999999999876 3589999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.... . ++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..+.. .+.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 2 256999999999999999999999865432 122334445688999999998766654 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++. .+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~-~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAK-RMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH-hhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 344 4689999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998875
No 113
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=351.70 Aligned_cols=215 Identities=24% Similarity=0.331 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4789999998841 23489999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++. .++..||.||+.|..... ..+.++.+++++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 234567999999863 445689999999864322 2233444456789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+||+++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 57789999999985 899999
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|++
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 986
No 114
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.1e-38 Score=349.85 Aligned_cols=218 Identities=24% Similarity=0.276 Sum_probs=179.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPN------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCC------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 578899988730 23589999999999999999999999999999999998763 4899999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.+++.+||+||+.+...... .......+.+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999999999999999986432100 00011123345678899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998754 899999999986 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 8999988864
No 115
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-38 Score=345.36 Aligned_cols=212 Identities=26% Similarity=0.356 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67899998874 23589999999999999999999999999999999998764 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
. .++.++|++|++.+++.+||+||+.+....+ .....+.++.++++++.+++.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345899999999999999999998865432 123333445688999999998766654 35799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECCC
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 779 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~ 779 (1140)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 67889999999984 5899988765
No 116
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-38 Score=355.22 Aligned_cols=219 Identities=25% Similarity=0.303 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+... .....+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 78999999985210 0123589999999999999999999999999999999998764 4799999886531
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 001146 622 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 673 (1140)
Q Consensus 622 ---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 673 (1140)
....++.+|||+|++ ..+...||+||+.|+.... ....++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3344579999999875432 234445556789999
Q ss_pred HHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 001146 674 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752 (1140)
Q Consensus 674 ~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 752 (1140)
+.+||. +..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 556654 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 753 PSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 753 ~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
++ ++.+.+||+++|++ |++++.|+++
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 86 57889999999985 8999999874
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-38 Score=345.89 Aligned_cols=214 Identities=27% Similarity=0.384 Sum_probs=180.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 357899988741 13589999999999999999999999999999999998764 4899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+||+||+.+....+ ....++.++.++++++.+++.+ ..+.. ++.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCH
Confidence 2 234567899999999999999999998865433 1233344456789999999985 55544 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57889999999985 89999
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
.|++
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 9875
No 118
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.3e-38 Score=342.53 Aligned_cols=211 Identities=28% Similarity=0.424 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 46789988774 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCH
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. . .++.++|++|++.+++.+|++||+.+...... ..+.++.++++++.+ ++.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 31 1 24569999999999999999999988754321 112234466777777 466555554 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999998777899999999986 57889999999985 899998
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 875
No 119
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.3e-38 Score=346.56 Aligned_cols=214 Identities=26% Similarity=0.361 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 78999999884 23589999999999999999999999999999999998764 4799999998753
Q ss_pred c-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235679999999999999999999987543111 122334445678899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999998877999999999986 57788999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|++++.|++
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899999875
No 120
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.5e-38 Score=349.89 Aligned_cols=216 Identities=19% Similarity=0.289 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 489999999874 24589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... ..++.++|++|++.+++.+||.||+.+...... ..+.+..++.+.++++.+++.+..+..+ +.|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 135679999999999999999999988643211 1223333456788899999987777653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 67888999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
++.|+++
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9999864
No 121
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=363.02 Aligned_cols=215 Identities=26% Similarity=0.428 Sum_probs=181.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.+..++.+|++|.|+. ++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 4566777899999862 23689999999999999999999999999999999999874 589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccC
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------RQSLVGL 688 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~g~ 688 (1140)
.+..+ ..++++++||+|++.+++ -|++||+.++. ++.++++ +.++++..++.+. .|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDASDEE----IIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCCHHH----HHHHHHHhcHHHhhcCCCcccchhcc
Confidence 87643 568999999999999887 79999999863 2233333 5666666666543 4566665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. .++|||||+|||++||||+++++++++||||++||.++++.+++.|.++++ ++|+|++||++. ....+|+|++|+
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4 468999999999999999999999999999999999999999999999876 599999999975 567789999998
Q ss_pred cCCEEEEECCCCc
Q 001146 769 RGGQEIYVGPLGR 781 (1140)
Q Consensus 769 ~gg~~~~~g~~~~ 781 (1140)
+ |+++..|..++
T Consensus 529 ~-G~l~~~g~~~~ 540 (559)
T COG4988 529 N-GRLVEQGTHEE 540 (559)
T ss_pred C-CceeccCCHHH
Confidence 5 89999998754
No 122
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-39 Score=360.14 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=181.0
Q ss_pred CCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc
Q 001146 537 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616 (1140)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 616 (1140)
..+..|+|+||+++|. ++++||+++||+|++||-+||+|+|||||||++|+|.+..+ .+|+|.+|
T Consensus 347 ~~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~Id 411 (591)
T KOG0057|consen 347 LFGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILID 411 (591)
T ss_pred cCCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEEC
Confidence 3456799999999995 23459999999999999999999999999999999998765 37999999
Q ss_pred CcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccc
Q 001146 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLV 686 (1140)
Q Consensus 617 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ 686 (1140)
|.++++ +.+|+.+||||||..+|. -||.+|+.|+. +..+.++ +-++.+..+++ +-.+|.+
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhH
Confidence 998754 568899999999888875 79999999863 2334433 34444554444 4556778
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
|..|. .|||||||||+||||++.||+|+++|||||.||++++.++++.+++. ..|+|+|++.|+.+ ....||+|++
T Consensus 482 GerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIV 557 (591)
T ss_pred hhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEE
Confidence 87764 59999999999999999999999999999999999999999999984 45999999999975 6889999999
Q ss_pred EecCCEEEEECCCCc
Q 001146 767 MKRGGQEIYVGPLGR 781 (1140)
Q Consensus 767 l~~gg~~~~~g~~~~ 781 (1140)
|++ |++...|+.++
T Consensus 558 l~n-G~v~e~gth~e 571 (591)
T KOG0057|consen 558 LDN-GTVKEYGTHSE 571 (591)
T ss_pred EEC-CeeEEeccHHH
Confidence 996 79999998743
No 123
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=353.40 Aligned_cols=218 Identities=25% Similarity=0.348 Sum_probs=181.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+... ...+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 68999999995210 0113589999999999999999999999999999999998764 4899999998863
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 622 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
. ...++.++||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23467899999986 4554 69999999876432 233455566788999999995 355544 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.|||+++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999874
No 124
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.3e-38 Score=355.60 Aligned_cols=230 Identities=21% Similarity=0.236 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|+............+...+|+||||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 489999999986321100000011235799999999999999999999999999999999998764 489999999886
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
... ..++.++||+|++ .++|.+||.||+.+...... ...++++.+++++++++.+++. +..++. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 58889999999988654321 1234555566788999999994 344543 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++|||||||||+|||||+.+|++|++||||+|||..++.++++.|+++.++ |.|+|++|||++ .+.+++||+++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999764 899999999986 57788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999999864
No 125
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-38 Score=337.96 Aligned_cols=209 Identities=33% Similarity=0.484 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++ ++++|+|+||++++| +++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 46889998874 235899999999999 9999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345679999999999999999999988654431 222333456788999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++. .+.+.+||+++|++ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999876 599999999986 56788999999985 7888765
No 126
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5e-38 Score=339.38 Aligned_cols=209 Identities=23% Similarity=0.310 Sum_probs=176.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67899999883 123589999999999999999999999999999999998763 4899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..++. .+.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 14567999999998888999999998865432 123334445678899999998766654 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999998777899999999986 57788999999985 6753
No 127
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-38 Score=351.94 Aligned_cols=218 Identities=26% Similarity=0.302 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+... ...+++|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 78999999995210 0124589999999999999999999999999999999998764 4899999998763
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 622 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
. ...++.++||+|++ .++ ..||+||+.|+.... ..+.++.+++++++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999999875432 223444445688999999996 555654 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+||+++|++
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~- 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK- 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999986 67889999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 222 G~i~~~g~~~ 231 (290)
T PRK13634 222 GTVFLQGTPR 231 (290)
T ss_pred CEEEEECCHH
Confidence 8999999863
No 128
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=344.73 Aligned_cols=216 Identities=27% Similarity=0.375 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899998874 24589999999999999999999999999999999998763 489999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... ..++.++|++|++.+++.+||+||+.+....+. ..+.++.+..++++++.+++.+..+.. .+.|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCH
Confidence 431 235679999999999999999999987643321 122334455678899999998766554 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++|+|+|+++|++. ++.+.+|++++|++ |+++..
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~ 218 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAH 218 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999998777999999999985 68889999999985 899999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+++
T Consensus 219 ~~~~ 222 (241)
T PRK10895 219 GTPT 222 (241)
T ss_pred CCHH
Confidence 8864
No 129
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-38 Score=354.76 Aligned_cols=219 Identities=25% Similarity=0.338 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+... ...+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 589999999995210 0123589999999999999999999999999999999998774 489999999765
Q ss_pred Cc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc
Q 001146 621 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 679 (1140)
Q Consensus 621 ~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 679 (1140)
.. ...++.++||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999986 4555 59999998875322 223444445678999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHH
Q 001146 680 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 758 (1140)
Q Consensus 680 -~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~ 758 (1140)
+..+.. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999998777999999999986 577
Q ss_pred HhhceEEEEecCCEEEEECCCC
Q 001146 759 EAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 759 ~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+.+|++++|++ |+++..|+++
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 89999999985 8999999864
No 130
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.3e-38 Score=343.76 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=179.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcCc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 618 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 67899999884 235899999999999999999999999999999999987632 12799999998
Q ss_pred ccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 001146 619 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~~ 689 (1140)
++.. ...++.++|++|++.+++ +|++||+.+....+. ....++.++.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999998754331 122334445678899999997 444443
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 589999999986 57789999999985
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 899999986
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.4e-38 Score=337.96 Aligned_cols=207 Identities=24% Similarity=0.349 Sum_probs=175.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 36789998884 23589999999999999999999999999999999998763 4899999998763
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+..+..+ +.|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCH
Confidence 2 2345779999999999999999999988642111 1233344456788999999987666653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999877899999999986 67789999999985 55
No 132
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-38 Score=350.36 Aligned_cols=217 Identities=24% Similarity=0.315 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 48899999998521 123589999999999999999999999999999999998764 489999999886
Q ss_pred Cc---ccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++ ..++..||+||+.|..... ..+.++.+++++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456799999997 3667789999999875432 2344445566889999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 45 67999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99863
No 133
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=332.21 Aligned_cols=230 Identities=23% Similarity=0.268 Sum_probs=196.6
Q ss_pred cEEEEEeEEEEEecCchhh----hcccc-------cCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCce
Q 001146 540 HSLTFDEVVYSVDMPEEMK----VQGVL-------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 608 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~ 608 (1140)
..++++||+.-....+..- .++.. .+-..-++|+|++++.||+..|||-||||||||+++|.++.. +
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--p 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--P 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--C
Confidence 3578888876554332211 11111 133457899999999999999999999999999999999887 4
Q ss_pred EEEEEEEcCcccCc------cc-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc
Q 001146 609 ITGNITISGYPKKQ------ET-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 681 (1140)
Q Consensus 609 ~~G~i~~~g~~~~~------~~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 681 (1140)
..|+|.++|.++.. +. .++.+++|+|.-.++|+.||.||..|+..++ ..++++|+++..+.++.+||.+.
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 58999999998643 12 3467899999999999999999999998776 46778899999999999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHh
Q 001146 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 760 (1140)
Q Consensus 682 ~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~ 760 (1140)
.+.+ +++|||||||||.+||||+.+|+|||+|||+|+|||--+.++++.|.++.++ ++|||++|||++ +.+++
T Consensus 158 ~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 158 ADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hhcC-----cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 9887 4689999999999999999999999999999999999999999999998754 899999999997 78999
Q ss_pred hceEEEEecCCEEEEECCCCc
Q 001146 761 FDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 761 ~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
-|||.+|+ +|+++..|++++
T Consensus 232 G~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 232 GDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred cceEEEec-CCeEEEeCCHHH
Confidence 99999998 589999999864
No 134
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-37 Score=339.58 Aligned_cols=212 Identities=26% Similarity=0.382 Sum_probs=178.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 57889998874 24589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357899999998888999999998765432 1233334456788999999987766653 56999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|+++|+++ ++. .+|++++|++ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999986 454 5999999985 89999887
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
No 135
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.9e-38 Score=340.32 Aligned_cols=217 Identities=24% Similarity=0.282 Sum_probs=174.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 6789999988421 0113589999999999999999999999999999999998763 4899999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
. ...++.++|++|++ .+++.+||+||+.+....... ....+..+...+++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 466789999999886543321 111111122235788889985 445544 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999986 56778999999985 7
Q ss_pred EEEEEC
Q 001146 772 QEIYVG 777 (1140)
Q Consensus 772 ~~~~~g 777 (1140)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
No 136
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.7e-38 Score=344.69 Aligned_cols=214 Identities=20% Similarity=0.262 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 489999999884 24589999999999999999999999999999999998763 479999999865
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 001146 621 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLR- 682 (1140)
Q Consensus 621 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 682 (1140)
.. ..+++.++|++|++.+++.+|++||+.+... .. .....+.++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1345679999999999999999999987542 21 123344456678999999997653
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 762 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 762 (1140)
+.. .+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 433 3579999999999999999999999999999999999999999999999877999999999986 5777899
Q ss_pred eEEEEecCCEEEEECCC
Q 001146 763 ELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 763 ~v~~l~~gg~~~~~g~~ 779 (1140)
|+++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999985 899999885
No 137
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-38 Score=342.87 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 489999999884 23589999999999999999999999999999999998764 489999998765
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ..++.++|++|++.+++.+||+||+.+... . ..++.++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999999998999999987521 0 1124567899999998766655 3579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999986 57788999999985 799988875
No 138
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-38 Score=350.09 Aligned_cols=219 Identities=21% Similarity=0.326 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|+... ...+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 378999999995210 0123589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 001146 621 KQ-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPG 690 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~ 690 (1140)
.. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++.+++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23567899999986 3554 59999999875432 233444556688999999996 555554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+||+++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 4899999999986 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 222 -G~i~~~g~~~ 231 (286)
T PRK13646 222 -GSIVSQTSPK 231 (286)
T ss_pred -CEEEEECCHH
Confidence 8999999863
No 139
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-38 Score=348.42 Aligned_cols=216 Identities=26% Similarity=0.380 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 4899999999841 23589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQ-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
.. ..+++.++|++|++. .+...||+||+.+..... ..+.++.+++++++++.++|.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 235678999999873 234579999998865322 223444445688999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.|||+++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 56778999999985 799
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
++.|+++
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999874
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1e-37 Score=337.06 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=173.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5789999988421 1124689999999999999999999999999999999998764 4899999998764
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 622 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+.++.+.++++.+++.+..+..+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 569999999999989999999988654321 222333456788999999987666653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998754 899999999986 44 55799999985 676
Q ss_pred E
Q 001146 774 I 774 (1140)
Q Consensus 774 ~ 774 (1140)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
No 141
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=341.39 Aligned_cols=215 Identities=23% Similarity=0.320 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 378999999884 23589999999999999999999999999999999998763 489999999875
Q ss_pred C---------cccccceEEEeccCCCCCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 621 K---------QETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 621 ~---------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ....++.++|++|++.+++.+|+.||+.+. .... ....++..+.++++++.+|+.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 012456799999999999999999999753 2221 1223333456788999999987666653
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.+|++++|.+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998777999999999986 56788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+.+
T Consensus 217 g~i~~~~~~~ 226 (242)
T PRK11124 217 GHIVEQGDAS 226 (242)
T ss_pred CEEEEeCCHH
Confidence 8999998863
No 142
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-38 Score=359.74 Aligned_cols=204 Identities=24% Similarity=0.295 Sum_probs=176.2
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---c----ccceEEEeccCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 637 (1140)
+...+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... . .++.++|++|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 345689999999999999999999999999999999998764 489999999886431 1 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
+++.+||+||+.+....+. ...++.+++++++++.++|.+..+..+ +.||||||||++|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 233444566889999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999875 4899999999986 67889999999985 8999999864
No 143
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.9e-38 Score=335.83 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=169.6
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 622 (1140)
++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~l~~~~~~-----------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~ 68 (211)
T cd03225 2 LKNLSFSYPD-----------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKL 68 (211)
T ss_pred ceeEEEecCC-----------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccC
Confidence 5678877741 114689999999999999999999999999999999998763 48999999987642
Q ss_pred --ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 623 --ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 623 --~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
...++.++|++|++. .++.+|++||+.+....+ .....+.++.++++++.+++.+..+..+ +.||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHH
Confidence 234567999999974 366789999998865432 1223333456788999999987666553 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999998877999999999986 67788999999986
No 144
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.3e-38 Score=337.10 Aligned_cols=209 Identities=26% Similarity=0.414 Sum_probs=170.5
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 623 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 623 (1140)
++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--
Confidence 567777773 24589999999999999999999999999999999998764 4899999998754
Q ss_pred cccceEEEeccCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 624 TFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 624 ~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
..++.++|++|++.+. +.+||+||+.+....... .....++.+++++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3456799999998763 338999999875432110 00111223456788999999987666653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ | +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 999999999999999999999999999999999999998777999999999986 57788999999974 4 66654
No 145
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=347.82 Aligned_cols=220 Identities=24% Similarity=0.297 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 478999999884110 0124589999999999999999999999999999999998774 589999999876
Q ss_pred Cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQ-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
.. ...++.++|++|++. .+..+||.||+.+..... ....++.+++++++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 224567999999862 233589999998865432 223444456688999999996 566655 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 67889999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999863
No 146
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=340.10 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=178.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 488999999874 13589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCC
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~LS 695 (1140)
... ..++.++|++|++.+++.+||+||+.+..... ..++.++.++++++.+ ++.+..+.. .+.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23567999999999999999999998864221 1122233456777777 465544443 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999986 68899999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99864
No 147
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=346.24 Aligned_cols=214 Identities=22% Similarity=0.308 Sum_probs=180.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYPD------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcCC------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 678999998841 23489999999999999999999999999999999998764 4899999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++. .+...|+.||+.+..... ..+.++.++.++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998865432 2234444556888999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999998877999999999986 45 67999999985 899999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+++
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9863
No 148
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=346.78 Aligned_cols=215 Identities=25% Similarity=0.363 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 789999998841 1248999999999999999999999999999999999876 35899999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
. ...++.++|++|++. .+...||.||+.+..... ..+.+..++.++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999963 334589999998765422 2334444556789999999987777653 579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999998765 899999999986 67789999999985 799999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+++
T Consensus 220 g~~~ 223 (277)
T PRK13652 220 GTVE 223 (277)
T ss_pred CCHH
Confidence 9864
No 149
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=342.83 Aligned_cols=218 Identities=22% Similarity=0.269 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 488999999874 24589999999999999999999999999999999998763 589999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCC----------CCC--CHHHHHHHHHHHHHHcCCcccccc
Q 001146 621 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEV--DSETRKMFIDEVMELVELNPLRQS 684 (1140)
Q Consensus 621 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~~~l~~~~~~ 684 (1140)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 234589999999999999999999986431110 000 111233457788999999876666
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhce
Q 001146 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 685 ~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
.+ +.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 579999999999999999999999999999999999999999999998765 899999999986 67789999
Q ss_pred EEEEecCCEEEEECCCC
Q 001146 764 LFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 764 v~~l~~gg~~~~~g~~~ 780 (1140)
+++|++ |++++.|+++
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 8999999864
No 150
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.4e-37 Score=334.31 Aligned_cols=210 Identities=25% Similarity=0.350 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 35788888774 24589999999999999999999999999999999998763 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
... ++.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+..+ ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 332 3568999999998999999999987654331 11 124678899999987766653 5699999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++ |+++..|++.+
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 99999999999999999999999999999999999998777999999999986 57789999999985 89999998753
No 151
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=355.11 Aligned_cols=212 Identities=25% Similarity=0.385 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+|+|+.. +.++|+|+|+++++||.+||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 79999999999742 34689999999999999999999999999999999998774 489999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~ 690 (1140)
.. ..+++.+++++|...+|. -|+|+||..+. ++.++|+ +.++++.+||++.. |+.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 43 346778999999877765 79999998763 3445544 56778888877543 44566544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.++ |+|+|++||+.. -.+.||||++|++
T Consensus 473 -~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 473 -RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 67999999999999999999999999999999999999999999988654 999999999986 3788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 8999999875
No 152
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=342.33 Aligned_cols=214 Identities=25% Similarity=0.354 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 68899999884 24589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++.+||+||+.+...... ...++.++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2345678999999888888999999988643211 112223345788999999987666653 5799999
Q ss_pred HHHHHHHHHHh------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 699 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 699 rqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
|||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999986 57789999999985 7
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 999998864
No 153
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.3e-37 Score=339.57 Aligned_cols=219 Identities=23% Similarity=0.256 Sum_probs=177.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 46789999884 24589999999999999999999999999999999998421145899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. . .+..++|++|++.+++.+|++|++.+....... . ..+.++..+.++++++.+++. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 233489999999999999999999876432211 0 112233345678899999997 34454321 2
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 771 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999986 56666 799999985 8
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
++++.|++
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999986
No 154
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=339.48 Aligned_cols=218 Identities=23% Similarity=0.276 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 378999999874 235899999999999999999999999999999999986531 3589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCC
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGLPG 690 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~g~~~ 690 (1140)
.++.. ...++.++|++|++.+++.+||+||+.+....+.. .....+.++.++++++.+++.+. .+..
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999999888899999999986543211 11223334567889999998542 3332
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|+++ ++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 899999999986 57789999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (250)
T PRK14247 221 GQIVEWGPTR 230 (250)
T ss_pred CeEEEECCHH
Confidence 8999999863
No 155
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=341.14 Aligned_cols=214 Identities=24% Similarity=0.292 Sum_probs=178.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 617 (1140)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 589999999874 23589999999999999999999999999999999998653 13589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+....+ ....++.++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 134567999999988888 89999999875432 1233333455788999998842 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999864 899999999986 5778899999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |++++.|++
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 899999986
No 156
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-37 Score=354.88 Aligned_cols=204 Identities=21% Similarity=0.307 Sum_probs=177.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc----ccCc---c---cc-cceEEEec
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---E---TF-ARISGYCE 633 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~----~~~~---~---~~-~~~~~~v~ 633 (1140)
+...+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|. ++.. . .. ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 567899999999999999999999999999999999998774 4899999996 2211 1 12 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 001146 634 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 713 (1140)
Q Consensus 634 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ 713 (1140)
|++.++|.+||+||+.++...+ ....++++++++++++.+||.+..+... .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 2344556677899999999988777654 5699999999999999999999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||||||||+|||+.++..+++.|+++.++ |+|+|++||+++ ++.+++||+++|++ |+++..|+++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999764 899999999986 67899999999985 8999999874
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.2e-37 Score=340.94 Aligned_cols=214 Identities=22% Similarity=0.297 Sum_probs=180.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46889999884 13589999999999999999999999999999999998764 4899999998753
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 001146 622 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685 (1140)
Q Consensus 622 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 685 (1140)
. ...++.++|++|++.+++..|+.||+.++.... .....++.++.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 124567999999999999999999998754211 1123334445678899999998766654
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+.+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 577889999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
++|++ |+++..|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899998875
No 158
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=340.27 Aligned_cols=216 Identities=21% Similarity=0.234 Sum_probs=177.9
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 616 (1140)
.-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 6 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 72 (254)
T PRK14273 6 AIIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYE 72 (254)
T ss_pred ceEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEEC
Confidence 3589999999884 134899999999999999999999999999999999986642 247999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++ +||+||+.+...... .......++.++++++.+++. +..++.
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 147 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN-- 147 (254)
T ss_pred CEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC--
Confidence 987531 234667999999988875 899999998754321 112233345677888888873 233443
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|+|+++|+++ ++.+.+||+++|
T Consensus 148 ---~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l 222 (254)
T PRK14273 148 ---ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFF 222 (254)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 46799999999999999999999999999999999999999999999986 4799999999986 577889999999
Q ss_pred ecCCEEEEECCC
Q 001146 768 KRGGQEIYVGPL 779 (1140)
Q Consensus 768 ~~gg~~~~~g~~ 779 (1140)
++ |+++..|++
T Consensus 223 ~~-G~i~~~g~~ 233 (254)
T PRK14273 223 LN-GCIEEESST 233 (254)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999985
No 159
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=345.24 Aligned_cols=216 Identities=26% Similarity=0.305 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||++.|+. ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3889999998841 123589999999999999999999999999999999998774 489999999886
Q ss_pred Cc---ccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++ ..++..||.||+.+..... ....++.+++++++++.++|.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 23456799999997 3666789999998865432 1233444566889999999988777654 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999986 454 5999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+.+
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99864
No 160
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=339.68 Aligned_cols=218 Identities=24% Similarity=0.263 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478999999884 135899999999999999999999999999999999987642 3489999999
Q ss_pred cccC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8764 123456799999999999999999999886543211 1122333445788889888753 22322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5788899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 223 ~-G~i~~~~~~~ 233 (253)
T PRK14267 223 L-GKLIEVGPTR 233 (253)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 161
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-37 Score=327.42 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 619 (1140)
.+.|+||+|.|+.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999999732 13457999999999999999999999999999999999987632 468999999987
Q ss_pred cCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 620 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 620 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
+.. ...++.++|++|++.+++.+||+||+.+..... .+.. ...||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234667999999999999999999998753210 1222 3569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 678777776654468889999999985 898876
Q ss_pred C
Q 001146 777 G 777 (1140)
Q Consensus 777 g 777 (1140)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
No 162
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=342.12 Aligned_cols=216 Identities=25% Similarity=0.356 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 78899999874 24589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+|+.||+.++... ....... +..++.++++++.+++.+..++. .+.|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 141 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRR-----LTDLSG 141 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCC-----cccCCH
Confidence 2 23456799999999888889999999875311 0001111 22344578899999998776765 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |+++..
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQ 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEE
Confidence 9999999999999999999999999999999999999999998777999999999986 67889999999985 799999
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+.+
T Consensus 220 ~~~~ 223 (255)
T PRK11231 220 GTPE 223 (255)
T ss_pred cCHH
Confidence 9865
No 163
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=331.91 Aligned_cols=209 Identities=24% Similarity=0.333 Sum_probs=173.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. +. .|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~-------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYGE-------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeCC-------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 367899988741 11 399999999999999999999999999999998763 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|++||+.+....+. .. .+..++.++++++.+++.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3 1234679999999999999999999987543211 11 1223446789999999987777653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999985 7887654
No 164
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-37 Score=347.91 Aligned_cols=224 Identities=18% Similarity=0.231 Sum_probs=182.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-c-eEEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~-~~~G~i~~~g~~ 619 (1140)
++++|+++.|... .+...+|+||||+|++||++||+||||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 7899999998521 1225699999999999999999999999999999999997653 1 358999999998
Q ss_pred cCc---cc----ccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 620 KKQ---ET----FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 620 ~~~---~~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+.. .. .++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+..+... ..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--VY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--CC
Confidence 643 11 224699999997 47889999998876544321 1234455667889999999975322111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.++|||||||||+|||||+.+|++|++||||+|||+.++.++++.|+++.+ .|.|+|++||+++ .+.+++||+++|++
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999976 4899999999986 57789999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 230 -G~ive~g~~~ 239 (326)
T PRK11022 230 -GQVVETGKAH 239 (326)
T ss_pred -CEEEEECCHH
Confidence 8999999864
No 165
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=343.39 Aligned_cols=214 Identities=26% Similarity=0.383 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 67899999884 13489999999999999999999999999999999998764 4899999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++.. +...|+.||+.+..... ....++.++.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1345679999998753 34568999998864432 123333445678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998777999999999986 57788999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99863
No 166
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.7e-37 Score=342.18 Aligned_cols=220 Identities=26% Similarity=0.343 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 619 (1140)
-++++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478999999874 245899999999999999999999999999999999987643 236999999987
Q ss_pred cCc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 001146 620 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 686 (1140)
Q Consensus 620 ~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 686 (1140)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+.+++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345789999999999999999999875421100 00112233456789999999987666653
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 56999999999999999999999999999999999999999999999975 4899999999986 5788999999
Q ss_pred EEecCCEEEEECCCC
Q 001146 766 LMKRGGQEIYVGPLG 780 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~~ 780 (1140)
+|++ |++++.|+++
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7999999875
No 167
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.3e-38 Score=298.62 Aligned_cols=212 Identities=25% Similarity=0.366 Sum_probs=177.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+.++++..+.. ..+...||++|++.|++||.+||+|||||||||||-+++|+..+ .+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchh
Confidence 566666655432 23567899999999999999999999999999999999998774 4899999999864
Q ss_pred c-------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 622 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
. .-..+++|+|+|.-.+.|+||..||+...+.++.... .+......+.++.+||.+..+.. +.+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----cccc
Confidence 3 1134689999999999999999999999888775321 22234467889999998766654 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+. +.|.|.|++||||. +...|||.+-|.. |++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l 224 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRL 224 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-cee
Confidence 9999999999999999999999999999999999999999998886 45999999999985 6888999999985 787
Q ss_pred EE
Q 001146 774 IY 775 (1140)
Q Consensus 774 ~~ 775 (1140)
+.
T Consensus 225 ~~ 226 (228)
T COG4181 225 VE 226 (228)
T ss_pred cc
Confidence 63
No 168
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.7e-37 Score=335.78 Aligned_cols=212 Identities=25% Similarity=0.314 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 46789998874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCH
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. .. .++..+++++.++ +.+..+.. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 124579999999999999999999988754321 11 1223466777776 45544544 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57778999999985 89999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|+.++
T Consensus 213 ~~~~~~ 218 (230)
T TIGR03410 213 SGAGDE 218 (230)
T ss_pred ECCHHH
Confidence 998753
No 169
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.5e-37 Score=340.53 Aligned_cols=224 Identities=23% Similarity=0.297 Sum_probs=181.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+.....+ ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 78899999985210000 01235699999999999999999999999999999999998764 5899999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. ..++.++|++|++ .+.+.+||+||+.+..... .....+..++.++++++.+++. +..+.. ..
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 4667899999998754321 1122333345678899999995 555554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57778999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 228 ~i~~~g~~~ 236 (265)
T TIGR02769 228 QIVEECDVA 236 (265)
T ss_pred EEEEECCHH
Confidence 999999864
No 170
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-37 Score=347.58 Aligned_cols=226 Identities=23% Similarity=0.245 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+...... ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 489999999986321100 001235699999999999999999999999999999999998764 489999999876
Q ss_pred Cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 001146 621 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 691 (1140)
.. ..+++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 43 13456799999997 58889999999987654321 2344455667899999999963 44544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++||+++ .+.+++|++++|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999764 999999999986 56778999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999864
No 171
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.7e-37 Score=336.56 Aligned_cols=216 Identities=25% Similarity=0.316 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 67899998874 23589999999999999999999999999999999998764 4899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+++.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1235699999999999999999999886432100 0 0112233456789999999987766653 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999866 799999999986 57789999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+.+
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99998764
No 172
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=342.64 Aligned_cols=218 Identities=27% Similarity=0.374 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 489999999884 24589999999999999999999999999999999998763 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++.+|+.||+.+....... ........++.++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888889999999875321100 00111223345788999999987666653 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 67789999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+.+
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 99864
No 173
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-37 Score=329.88 Aligned_cols=225 Identities=23% Similarity=0.306 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc-C-c-eEEEEEEEcCc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YITGNITISGY 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 618 (1140)
++.+|++.++... .+..++++||||++++||++||+|.|||||||+.+.|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5788999888643 134579999999999999999999999999999999999765 2 2 46789999999
Q ss_pred ccCc---c---c-ccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 619 PKKQ---E---T-FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~---~---~-~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++-. + . ..+.+++++|++ .+.|.+||.+.+.-......... .+++.++++.++++.+|+.+........
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 6532 2 1 235799999996 67888999988876554332111 3445566788999999998754333223
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..+|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++.+ .|.++|++|||+. -+.++||||.+|.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 468999999999999999999999999999999999999999999999986 5999999999997 5889999999999
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
. |++|..|+.+
T Consensus 229 a-G~iVE~g~~~ 239 (316)
T COG0444 229 A-GRIVEEGPVE 239 (316)
T ss_pred C-cEEEEeCCHH
Confidence 5 8999999974
No 174
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=337.17 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=176.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC---cCceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~---~~~~~~G~i~~~g 617 (1140)
.++++|+++.|. ++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478999999874 245899999999999999999999999999999999952 2212479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+..+.... ...+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988887 699999988754331 11222334557889999998642211111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4899999999986 57789999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
+++.|++
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999986
No 175
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.8e-37 Score=347.38 Aligned_cols=225 Identities=19% Similarity=0.284 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 619 (1140)
-++++|+++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48999999988531 12356999999999999999999999999999999999987642 137999999998
Q ss_pred cCc---cc---cc-ceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 620 KKQ---ET---FA-RISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 620 ~~~---~~---~~-~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+.. .. ++ +.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 643 11 22 4799999998 68899999999987654321 2344455567888999999975432221 23
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.++||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+++||+++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999765 899999999986 56788999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 238 -G~ive~g~~~ 247 (330)
T PRK09473 238 -GRTMEYGNAR 247 (330)
T ss_pred -CEEEEECCHH
Confidence 8999999864
No 176
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=337.83 Aligned_cols=217 Identities=19% Similarity=0.253 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478999999884 235899999999999999999999999999999999986532 2589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87631 2345679999999999999999999988754321 1123333456788899998842 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 689999999986 5778999999997
Q ss_pred -----cCCEEEEECCC
Q 001146 769 -----RGGQEIYVGPL 779 (1140)
Q Consensus 769 -----~gg~~~~~g~~ 779 (1140)
+.|++++.|++
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 25899999986
No 177
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-37 Score=323.26 Aligned_cols=190 Identities=58% Similarity=0.938 Sum_probs=163.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+.. .+++++|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999998521 012468999999999999999999999999999999999753224589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhH
Confidence 5 34566799999999999999999999874210 0 49999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877799999999998644678899999998548998875
No 178
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=337.87 Aligned_cols=221 Identities=23% Similarity=0.307 Sum_probs=178.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEE
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITI 615 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~ 615 (1140)
|..++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34589999999884 1358999999999999999999999999999999999743 1 135899999
Q ss_pred cCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 616 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 616 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+|+++.. ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+....... ..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CC
Confidence 9987642 234567999999988888 5999999987543211 1222334567888999888542111111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~- 223 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM- 223 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999854 799999999986 57789999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 224 G~i~~~g~~ 232 (253)
T PRK14242 224 GKLIEVGPT 232 (253)
T ss_pred CEEEEeCCH
Confidence 899999875
No 179
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-37 Score=341.51 Aligned_cols=215 Identities=27% Similarity=0.343 Sum_probs=180.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPD------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 678999998841 23489999999999999999999999999999999998763 4899999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++. .+...||.||+.+..... ....++.++++.++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999863 333479999998764321 2234444556789999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.||++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57788999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99864
No 180
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-37 Score=338.25 Aligned_cols=218 Identities=21% Similarity=0.263 Sum_probs=179.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEE
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIT 614 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~ 614 (1140)
....++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 455699999999884 1358999999999999999999999999999999999864 2 13589999
Q ss_pred EcCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 001146 615 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSL 685 (1140)
Q Consensus 615 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~ 685 (1140)
++|.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 234677999999988887 899999988654321 1233334456788999998743 22332
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 35799999999999999999999999999999999999999999999985 4789999999986 5778899999
Q ss_pred EEecCCEEEEECCC
Q 001146 766 LMKRGGQEIYVGPL 779 (1140)
Q Consensus 766 ~l~~gg~~~~~g~~ 779 (1140)
+|++ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 899999985
No 181
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-37 Score=343.05 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+... ...+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 378999999985210 0113589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 001146 621 KQ-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPG 690 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~ 690 (1140)
.. ...++.++|++|++ .+++ .||+||+.+..... ....++.++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN----- 142 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 42 23456799999986 3444 69999998865432 1233334456788999999963 44544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999998777999999999986 57788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (280)
T PRK13649 221 GKLVLSGKPK 230 (280)
T ss_pred CEEEEeCCHH
Confidence 8999998863
No 182
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2e-37 Score=383.41 Aligned_cols=211 Identities=25% Similarity=0.403 Sum_probs=177.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|.+. +++++|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999998663 1245899999999999999999999999999999999987 4 37999999988
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~ 689 (1140)
+.+ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ ++++++..+++ +-.||.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 457889999999999887 69999999852 2334433 34445544443 3457888876
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+ ..||||||||++|||||++||+||+||||||+||+++++.+.+.|+++. +++|+|++||+++ ..+.+|+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 5 4699999999999999999999999999999999999999999999875 5899999999985 5678999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 8999999853
No 183
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.3e-37 Score=340.27 Aligned_cols=217 Identities=28% Similarity=0.403 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 67899999874 24589999999999999999999999999999999998763 4899999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
. ...++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 23345689999998777889999999875311000 00111223346788999999987766653 579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 67789999999985 7999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+.+
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 864
No 184
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7.3e-37 Score=331.91 Aligned_cols=213 Identities=26% Similarity=0.371 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 48899999988521 0113589999999999999999999999999999999998764 489999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+.+++++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 257999999999999999999998865432 1223344566889999999987666653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 44 56999999985 78
Q ss_pred EEE
Q 001146 773 EIY 775 (1140)
Q Consensus 773 ~~~ 775 (1140)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.4e-37 Score=334.53 Aligned_cols=201 Identities=29% Similarity=0.415 Sum_probs=169.9
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEec-cCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 641 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 641 (1140)
+.+++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 456799999999999999999999999999999999998764 48999999986432 23456789997 55677888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 721 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 721 (1140)
+|++||+.+....+ ....++.++.++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865433 1223334456788999999988777654 569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 722 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999985 7888765
No 186
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=335.03 Aligned_cols=222 Identities=21% Similarity=0.280 Sum_probs=180.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~ 616 (1140)
+.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++
T Consensus 3 ~~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 3 NKVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred cEEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 4589999999884 2358999999999999999999999999999999999864 21 247999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ...++.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+++.+....... ...
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 2346779999999999999999999987644321 11223334457888999998542111111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++ |
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-G 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 689999999986 67789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 224 ~i~~~~~~~ 232 (252)
T PRK14256 224 DLVECGETK 232 (252)
T ss_pred EEEEeCCHH
Confidence 999999863
No 187
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-37 Score=340.38 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 5899999998841 124589999999999999999999999999999999998764 489999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.+..++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 235677999999973 567789999998865422 1233444556789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|+|+++|+++ ++ ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999986 44 47999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+.+
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 99863
No 188
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-37 Score=340.12 Aligned_cols=218 Identities=21% Similarity=0.289 Sum_probs=182.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEE
Confidence 4689999999984 24589999999999999999999999999999999998764 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
+.. ...++.++|++|++.+++.+|++||+.+......+ .... +..++.++++++.+++.+..++. ++.|
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 144 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR-KEDEEAVTKAMQATGITHLADQS-----VDTL 144 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCC-HHHHHHHHHHHHHcCCHHHhcCC-----cccC
Confidence 532 23345799999999998889999999875211100 0111 22344678899999998766665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 222 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKI 222 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999986 68899999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..|+++
T Consensus 223 ~~~g~~~ 229 (265)
T PRK10253 223 VAQGAPK 229 (265)
T ss_pred EEeCCHH
Confidence 9999874
No 189
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-37 Score=371.47 Aligned_cols=221 Identities=21% Similarity=0.304 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 388999999884 2458999999999999999999999999999999999876433589999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... ..++.++|++|++.+++.+||+||+.+....+.....+.++.+++++++++.+++.+..+..+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 432 124669999999999999999999988654321111223334456889999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|++.+
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 99865
No 190
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.9e-37 Score=328.16 Aligned_cols=210 Identities=23% Similarity=0.321 Sum_probs=175.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. +++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 ~~~~~l~~~~~~---------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYEH---------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeCC---------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 367899988741 36799999999999999999999999999999998764 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+|+.||+.+...... .... ..+++++++++.+++.+..++.+ +.|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLNA-EQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--CccH-HHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHH
Confidence 3 2345679999999999999999999987543211 1111 22345788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 56788999999985 89988874
No 191
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=346.37 Aligned_cols=226 Identities=15% Similarity=0.196 Sum_probs=180.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC--ceEEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~ 619 (1140)
++++|++++|+.. .+...+|+||||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 7899999998632 1235699999999999999999999999999999999997642 2357999999987
Q ss_pred cCc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCccccccccc
Q 001146 620 KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVG 687 (1140)
Q Consensus 620 ~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~g 687 (1140)
+.. .. .++.++||+|++. +.|.+||.+++........... ....+.++.+.++++.+||.+..+..
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-- 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM-- 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH--
Confidence 642 11 1347999999975 6788999999976432110000 11123345678999999997532211
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
.....+|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++|||++ .+.+++||+++
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 1124679999999999999999999999999999999999999999999999864 899999999986 57789999999
Q ss_pred EecCCEEEEECCCC
Q 001146 767 MKRGGQEIYVGPLG 780 (1140)
Q Consensus 767 l~~gg~~~~~g~~~ 780 (1140)
|++ |+++..|+.+
T Consensus 232 m~~-G~ive~g~~~ 244 (330)
T PRK15093 232 LYC-GQTVETAPSK 244 (330)
T ss_pred EEC-CEEEEECCHH
Confidence 985 8999999864
No 192
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=331.03 Aligned_cols=213 Identities=27% Similarity=0.400 Sum_probs=181.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ .+.+++|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 35889998874 23589999999999999999999999999999999998764 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..++.+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 235679999999999988999999988654331 223333456788999999987777653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57889999999985 899998874
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=336.90 Aligned_cols=221 Identities=23% Similarity=0.256 Sum_probs=178.7
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 18 ~~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 18 IKMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred ceEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 3699999999884 23589999999999999999999999999999999997653 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+.++.++++++.+++.+....... ...
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 161 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPG 161 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987642 2345679999999888874 999999987543311 11222334557889999998642111111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G 238 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-G 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999865 789999999986 57788999999985 8
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|+.
T Consensus 239 ~i~~~g~~ 246 (267)
T PRK14235 239 NLVEVGDT 246 (267)
T ss_pred EEEEeCCH
Confidence 99999975
No 194
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-37 Score=342.04 Aligned_cols=218 Identities=24% Similarity=0.285 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCce-EEEEEEEcCcc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 619 (1140)
.++++|+++.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999998841 12348999999999999999999999999999999999876421 13899999998
Q ss_pred cCc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 620 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
... ...++.++|++|++. .++..||+||+.|..... ..+.++.+++++++++.++|.+..+... +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 234567999999974 567799999998764322 2344455566889999999987777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 44 57999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 999863
No 195
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.5e-38 Score=384.31 Aligned_cols=216 Identities=28% Similarity=0.429 Sum_probs=180.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
....++|+||+|.|+. ++++|+|+|++++|||.+||+||||||||||+++|.|..++ .+|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg 390 (567)
T COG1132 325 TIGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDG 390 (567)
T ss_pred CCCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECC
Confidence 3467999999999962 34689999999999999999999999999999999998874 589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccCC
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
.+++. ..+|+.+++|+|++.+|. .||+||+.++. ++.++++-.+ .+++.++. +.+..||.+|..
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~ 462 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER 462 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHHHHHHHHHhChHHHHHh--CcccccceecCC
Confidence 88754 567889999999999998 89999999863 2234433222 12333333 344678999855
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
| ..||||||||++||||+++||++|+||||||+||+.++..+++.++++. +++|+|+++|+++. .+.+|+|++|++
T Consensus 463 G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~ 538 (567)
T COG1132 463 G-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDN 538 (567)
T ss_pred C-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEEC
Confidence 4 5699999999999999999999999999999999999999999999876 57899999999863 455999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 539 -G~i~e~G~h~ 548 (567)
T COG1132 539 -GRIVERGTHE 548 (567)
T ss_pred -CEEEEecCHH
Confidence 8999999974
No 196
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=342.08 Aligned_cols=220 Identities=21% Similarity=0.293 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 478999999985210 00134589999999999999999999999999999999998764 489999999876
Q ss_pred Cc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQ----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ...++.++|++|++. .+...||.||+.|..... .....+.+++++++++.+||.+..++.+ +.||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234678999999974 233469999999875432 2233444566889999999988777764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 454 4999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 224 ~~g~~~ 229 (280)
T PRK13633 224 MEGTPK 229 (280)
T ss_pred EecCHH
Confidence 999864
No 197
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-37 Score=338.79 Aligned_cols=216 Identities=24% Similarity=0.296 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4899999998852 113489999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++. +++..|+++|+.+..... ....++..+.++++++.+++.+..+.. .+.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234667999999974 677789999998865422 123333445678899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.. +|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 4554 999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99864
No 198
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-37 Score=342.27 Aligned_cols=220 Identities=20% Similarity=0.308 Sum_probs=178.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+... .....+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 4589999999985210 0013489999999999999999999999999999999998763 48999999987
Q ss_pred cCc--------ccccceEEEeccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 001146 620 KKQ--------ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~--------~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~ 689 (1140)
+.. ...++.++|++|++.. +...|++||+.+..... ....++..+.++++++.++|. +..+..
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~---- 147 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS---- 147 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC----
Confidence 531 2345679999998632 22369999998865322 123333445678889999994 555554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|+
T Consensus 148 -~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~ 225 (289)
T PRK13645 148 -PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH 225 (289)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 3579999999999999999999999999999999999999999999998754 899999999986 6788999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |++++.|+.
T Consensus 226 ~-G~i~~~g~~ 235 (289)
T PRK13645 226 E-GKVISIGSP 235 (289)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
No 199
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=335.69 Aligned_cols=222 Identities=23% Similarity=0.259 Sum_probs=180.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEE
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIT 614 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~ 614 (1140)
....++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344699999999884 24589999999999999999999999999999999998653 14589999
Q ss_pred EcCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 615 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 615 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++|.++.. ...++.++|++|++.+++ .||+||+.+..... .....++.++.+.++++.+++.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 134667999999988887 69999998865322 111233344567888999988532211111 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
..+.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 246799999999999999999999999999999999999999999999985 4799999999986 67889999999985
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 238 -G~i~~~g~~ 246 (267)
T PRK14237 238 -GDLIEYDKT 246 (267)
T ss_pred -CEEEEeCCH
Confidence 899999986
No 200
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=333.54 Aligned_cols=219 Identities=21% Similarity=0.265 Sum_probs=177.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCccc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 620 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 67899999884 23589999999999999999999999999999999997542 24589999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+...... +...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 43 234567999999998887 699999988654331100 11223345778999999853211111 1123579999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+++|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+.+|++++|++ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57789999999985 8999999
Q ss_pred CC
Q 001146 778 PL 779 (1140)
Q Consensus 778 ~~ 779 (1140)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 85
No 201
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-37 Score=337.68 Aligned_cols=218 Identities=26% Similarity=0.361 Sum_probs=178.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc------eEEEEEEE
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 615 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~------~~~G~i~~ 615 (1140)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 67899998874 245899999999999999999999999999999999987632 12799999
Q ss_pred cCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 616 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 616 ~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+|.+... ...++.++|++|++..++.+|++||+.+....... .... ++.++.++++++.+++.+..++.
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~----- 142 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT-HRDGEIAWQALALAGATALVGRD----- 142 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCC-HHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 9987642 23455689999998766679999999875321110 1111 22345578899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHh---------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHh
Q 001146 691 VSGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 760 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~ 760 (1140)
+..||||||||++|||+|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~ 221 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARH 221 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHh
Confidence 3579999999999999999 599999999999999999999999999998765 899999999986 57789
Q ss_pred hceEEEEecCCEEEEECCCC
Q 001146 761 FDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 761 ~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+|++++|++ |+++..|+++
T Consensus 222 ~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 222 ADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CCEEEEEEC-CeEEEecCHH
Confidence 999999985 8999999864
No 202
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.4e-36 Score=320.03 Aligned_cols=190 Identities=49% Similarity=0.836 Sum_probs=163.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC--cCceEEEEEEEcCc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 618 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 618 (1140)
.++++|+++.|+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 588999999985210 011245899999999999999999999999999999999987 5 45899999999
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
++.....++.++|++|++.+++.+|++||+.+.... . .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHH
Confidence 875444567899999999999999999999764210 0 399999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|+++.++|+|+|+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986567788999999985 7888764
No 203
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.4e-36 Score=331.09 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 36789998884 23589999999999999999999999999999999998763 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..+... +.||+||+|
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999988754321 223333456788999999987666653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+++|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 57888999999985 899999986
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 216 ~ 216 (237)
T TIGR00968 216 D 216 (237)
T ss_pred H
Confidence 3
No 204
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-37 Score=333.74 Aligned_cols=209 Identities=25% Similarity=0.351 Sum_probs=176.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 478999999874 23589999999999999999999999999999999998764 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++ .|++||+.+....+ . . .+.+++++++.+++. +..+.. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988887 69999998754321 1 1 123467889999996 444543 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57789999999985 79999
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
.|++
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8886
No 205
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=336.37 Aligned_cols=216 Identities=22% Similarity=0.255 Sum_probs=176.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4599999999884 24589999999999999999999999999999999997542 1358999999
Q ss_pred CcccC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 001146 617 GYPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 687 (1140)
Q Consensus 617 g~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 687 (1140)
|.++. ....++.++|++|++.+++ .||+||+.+....+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 1234567999999998888 599999998764331 112 22344677888887642 23332
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999986 688999999999
Q ss_pred ec----------CCEEEEECCCC
Q 001146 768 KR----------GGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~----------gg~~~~~g~~~ 780 (1140)
++ .|+++..|+++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 85 26789999863
No 206
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=330.96 Aligned_cols=212 Identities=22% Similarity=0.302 Sum_probs=177.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+. + ..|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 678999999851 1 2389999999999999999999999999999998763 4799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|+.||+.+...... ... +..++.++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 224579999999999999999999987532111 111 223456789999999987777664 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999985 899999986
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 3
No 207
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.5e-37 Score=331.34 Aligned_cols=198 Identities=23% Similarity=0.371 Sum_probs=167.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998763 4899999998764322 12489999999999999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 729 (1140)
+......+ ....++.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86421111 2233344456788999999987766653 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 730 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 730 ~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 67889999999985 899988864
No 208
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-37 Score=349.51 Aligned_cols=191 Identities=23% Similarity=0.378 Sum_probs=167.6
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998764 48999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.|+.. ...+++++++++.+++.+..+..+ +.|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112345788999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999998765 899999999986 68899999999985 8999999874
No 209
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=335.07 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=177.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999999884 2358999999999999999999999999999999999764 21 1479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. ||+||+.+....+. ....++.+++++++++.+++.+....... ...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2345679999999888875 99999988654321 11233334557788898888532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 67889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+++
T Consensus 232 i~~~g~~~ 239 (259)
T PRK14274 232 LVECNDTN 239 (259)
T ss_pred EEEECCHH
Confidence 99999863
No 210
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-36 Score=349.77 Aligned_cols=195 Identities=23% Similarity=0.377 Sum_probs=169.7
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999998764 48999999987632 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.|+.... ...+.+++++++++.++|.+..+... +.||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875421 12233456789999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+.++..+.+.|++++++ |+|+|++||+++ ++..++|++++|++ |+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999998765 899999999986 67889999999985 8999999863
No 211
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=332.88 Aligned_cols=216 Identities=21% Similarity=0.237 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 578999999874 235899999999999999999999999999999999976531 2579999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+...... ....++.+++++++++.+++.+ ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK---- 143 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC----
Confidence 87642 134567999999998887 899999998754321 1122333455778899998742 2232
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++.+.+||+++|+
T Consensus 144 -~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 144 -SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 2467999999999999999999999999999999999999999999999876 689999999986 6788999999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 221 ~-G~i~~~~~~~ 231 (251)
T PRK14270 221 M-GDLIEFNKTE 231 (251)
T ss_pred C-CeEEEeCCHH
Confidence 5 8999999864
No 212
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.3e-36 Score=324.89 Aligned_cols=189 Identities=23% Similarity=0.352 Sum_probs=161.5
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC---c----ccccceEEEeccCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 639 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 639 (1140)
+++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4589999999999999999999999999999999998763 4899999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
+.+|++||+.+..... ....++..+.++++++.+++.+..+..+ ++||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1223344556789999999987766653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
||+|||+.++..+.+.|+++.++|.|+|+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999985 35689999875
No 213
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-36 Score=329.09 Aligned_cols=213 Identities=26% Similarity=0.379 Sum_probs=180.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|. + ++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWK------------E--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeC------------C--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcC
Confidence 35788888773 1 269999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.++|++|++.+++.+|+.||+.+..... ..+..+.++.+.++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 31 23567999999999999999999998765332 1223334455778999999987777653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||||+++|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998764 999999999986 57788999999985 899999886
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 215 ~ 215 (235)
T cd03299 215 E 215 (235)
T ss_pred H
Confidence 3
No 214
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-36 Score=325.07 Aligned_cols=191 Identities=25% Similarity=0.388 Sum_probs=163.3
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
|+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998764 48999999987531 1235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.+..... ..+..+++++++++.+++.+..+.. +..||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2223345678899999998766654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|+.+++.+.+.|++++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 57788999999985 7888765
No 215
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=331.09 Aligned_cols=215 Identities=21% Similarity=0.290 Sum_probs=176.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 488999999884 134899999999999999999999999999999999975421 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+....+. ....++.++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234667999999988887 899999998754321 1122333456778888888742 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999854 899999999986 5788899999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
No 216
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.6e-36 Score=379.16 Aligned_cols=213 Identities=25% Similarity=0.393 Sum_probs=177.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 471 ~~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCE
Confidence 457999999999951 23589999999999999999999999999999999998874 5899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.+ ..+|+.++||+|++.+++ .|++||+.++.. ++.++++ +.++++..++. +-.|+.+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC
Confidence 8643 467889999999999886 599999987521 1233332 34555555543 345777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|+
T Consensus 608 ~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 EG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 4899999999985 567899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 683 ~-G~i~~~G~~~ 693 (708)
T TIGR01193 683 H-GKIIEQGSHD 693 (708)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999863
No 217
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=332.11 Aligned_cols=220 Identities=25% Similarity=0.295 Sum_probs=176.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
-++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999999884 2358999999999999999999999999999999999732 21 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+...... ....+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcc
Confidence 87632 234567999999998887 899999988654321 1122233455678888888743111111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999986 67889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
+++.|+.+
T Consensus 225 i~~~g~~~ 232 (252)
T PRK14239 225 LIEYNDTK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999863
No 218
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=337.86 Aligned_cols=217 Identities=24% Similarity=0.310 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 48899999998521 12358999999999999999999999999999999999876 3589999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234677999999974 567789999998765322 123334445678999999998776664 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 999999999986 34 46999999985 79999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99863
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=333.48 Aligned_cols=217 Identities=21% Similarity=0.286 Sum_probs=178.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-e--EEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 617 (1140)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 588999999884 235899999999999999999999999999999999976532 2 479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+....+. ...+.+.++.++++++.+++.+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 87632 234567999999998887 899999988654321 1122333445678888888742 2333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 2467999999999999999999999999999999999999999999999865 699999999987 6889999999997
Q ss_pred c----CCEEEEECCCC
Q 001146 769 R----GGQEIYVGPLG 780 (1140)
Q Consensus 769 ~----gg~~~~~g~~~ 780 (1140)
+ +|+++..|++.
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999999863
No 220
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2e-36 Score=335.47 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|..+... ...+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCCc----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 37899999998521100 001124689999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcC
Q 001146 621 KQ---ETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~L 694 (1140)
.. ...++.++|++|++. +.+.+|+.|++.+...... .....+.++.++++++.+++. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123456999999874 5678899999988654321 122333445678899999994 444543 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999986 67788999999985 899
Q ss_pred EEECCC
Q 001146 774 IYVGPL 779 (1140)
Q Consensus 774 ~~~g~~ 779 (1140)
+..|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 998875
No 221
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=340.26 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=181.2
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|++++|+. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46999999999852 124589999999999999999999999999999999997542 2357999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD-SETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
|.++.. ...++.++||+|++.+++ .|++||+.|+.... ... .+..++.++++++.++|.+..++.++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 998742 235678999999998875 89999999865322 122 2223344677888888754333344433
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||++. .+.+.+||+++|++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999998865 799999999986 57788999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 300 G~i~e~g~~~ 309 (329)
T PRK14257 300 GWIEEAGETK 309 (329)
T ss_pred CEEEEeCCHH
Confidence 8999999874
No 222
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=331.11 Aligned_cols=220 Identities=18% Similarity=0.249 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
.-+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 356889998874 2458999999999999999999999999999999999754 21 3589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ....+..++.++++++.+++.+....... ....
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChh
Confidence 87532 1346679999999888885 999999886433211 11222334557788999998652211111 1235
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~ 225 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GR 225 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4899999999986 67788999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 226 i~~~~~~ 232 (251)
T PRK14244 226 IVEYNTT 232 (251)
T ss_pred EEEeCCH
Confidence 9999875
No 223
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-35 Score=373.32 Aligned_cols=214 Identities=28% Similarity=0.446 Sum_probs=179.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 461 ~~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~ 527 (694)
T TIGR03375 461 QGEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGV 527 (694)
T ss_pred cceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 357999999999952 224589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++. +-.||.+|+
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCHHH----HHHHHHHcChHHHHHhCcccccceecC
Confidence 8754 457889999999999887 69999998752 1233332 44555555543 345777876
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+|++|+
T Consensus 598 ~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 55 5699999999999999999999999999999999999999999999875 4899999999985 468899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 674 ~-G~i~e~G~~~ 684 (694)
T TIGR03375 674 N-GRIVADGPKD 684 (694)
T ss_pred C-CEEEeeCCHH
Confidence 5 8999999863
No 224
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=331.09 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=176.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCce---EEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~---~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 478899999884 2458999999999999999999999999999999999865422 379999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+++.++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 2345679999999999999999999987653221 1122233345566677776532 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |++++.|+++
T Consensus 222 ~-G~i~~~~~~~ 232 (252)
T PRK14272 222 V-GDLVEHGPTD 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 7999999863
No 225
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.7e-37 Score=374.49 Aligned_cols=214 Identities=29% Similarity=0.440 Sum_probs=180.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 336 ~~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~ 402 (574)
T PRK11160 336 QVSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQ 402 (574)
T ss_pred CCeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 457999999999952 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccCC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------RQSLVGLP 689 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~g~~ 689 (1140)
++.+ ..+|+.++||+|++.+++ .|++||+.++. ++.+++ .+.++++.+++.+. .||.+|..
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----CccCHH----HHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 8654 456788999999998886 69999998752 122332 35677777777653 46677664
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 473 g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~ 548 (574)
T PRK11160 473 G-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN 548 (574)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC
Confidence 3 5699999999999999999999999999999999999999999999875 5899999999986 3567999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 549 -G~i~~~g~~~ 558 (574)
T PRK11160 549 -GQIIEQGTHQ 558 (574)
T ss_pred -CeEEEeCCHH
Confidence 8999999863
No 226
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-36 Score=381.70 Aligned_cols=211 Identities=28% Similarity=0.399 Sum_probs=178.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 449 ~~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~ 515 (686)
T TIGR03797 449 SGAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQ 515 (686)
T ss_pred CceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCE
Confidence 357999999999952 124589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++++ ..+|+.++||+|++.+++ .|++||+.++. + .++++ +.++++..++.+ -.||.+|.
T Consensus 516 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige 584 (686)
T TIGR03797 516 DLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISE 584 (686)
T ss_pred EcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHHH----HHHHHHHcCcHHHHHhccccccccccC
Confidence 8753 467889999999999886 69999998752 1 23332 456666666653 34677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|+|++|+
T Consensus 585 ~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~ 658 (686)
T TIGR03797 585 GG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD 658 (686)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 589999999985 567899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 659 ~-G~iv~~G~~~ 669 (686)
T TIGR03797 659 A-GRVVQQGTYD 669 (686)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
No 227
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=330.42 Aligned_cols=219 Identities=22% Similarity=0.250 Sum_probs=176.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 478999999874 235899999999999999999999999999999999976532 3479999999
Q ss_pred cccCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 618 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 618 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+..++.++++++.+++.+....... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87631 234667999999998887 899999988643221 11222334556778888887532111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 689999999986 67888999999985 899
Q ss_pred EEECCC
Q 001146 774 IYVGPL 779 (1140)
Q Consensus 774 ~~~g~~ 779 (1140)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999885
No 228
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=331.89 Aligned_cols=222 Identities=20% Similarity=0.257 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|+++.|.. +.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~~-------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYDT-------------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeCC-------------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 5899999998841 24899999999999999999999999999999999986542 1469999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ +|++||+.+...... .....+.++.+.++++.+++.+..+.... ....
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87531 234567999999988888 899999988653321 11222334567888999988542211111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC-
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 770 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g- 770 (1140)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||++. ++.+.+|++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 688899999999853
Q ss_pred ---CEEEEECCCC
Q 001146 771 ---GQEIYVGPLG 780 (1140)
Q Consensus 771 ---g~~~~~g~~~ 780 (1140)
|+++++|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999863
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=297.36 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|+..+| +...+|++||++.+.|+++.|+|.|||||||+|+||.-+.. +..|.|.+||+.+
T Consensus 6 ~l~v~dlHK~~-------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRY-------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhc-------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEE
Confidence 35566665544 45668999999999999999999999999999999987665 4589999999764
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc
Q 001146 621 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 684 (1140)
Q Consensus 621 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 684 (1140)
.. ...|.+.++|+|.-++++.+||.||+.-+..--+ ..++.+..++.+..++.+|+.+..|.
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 21 1234567999999999999999999975422111 23455566678889999999988886
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 685 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 685 ~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
. +..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|.+++||.+. ...+...+|
T Consensus 149 Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v 222 (256)
T COG4598 149 Y-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHV 222 (256)
T ss_pred C-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhhe
Confidence 5 3469999999999999999999999999999999999999999999999999999999999986 467788999
Q ss_pred EEEecCCEEEEECCCC
Q 001146 765 FLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~~ 780 (1140)
++|++ |.+-..|||+
T Consensus 223 ~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 223 IFLHQ-GKIEEEGPPE 237 (256)
T ss_pred EEeec-ceecccCChH
Confidence 99996 8999999984
No 230
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-38 Score=340.94 Aligned_cols=219 Identities=25% Similarity=0.369 Sum_probs=183.0
Q ss_pred CCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE
Q 001146 536 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 615 (1140)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 615 (1140)
....+.++|+||+|.|+ .++++|+||||++.||+.+||+||||+||||++++|-...+ ..+|.|.+
T Consensus 532 ~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~i 597 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITI 597 (790)
T ss_pred cccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEE
Confidence 34568899999999996 34678999999999999999999999999999999976554 56899999
Q ss_pred cCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHH--HH-HHHcCCcccccccccCC
Q 001146 616 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID--EV-MELVELNPLRQSLVGLP 689 (1140)
Q Consensus 616 ~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~-l~~~~l~~~~~~~~g~~ 689 (1140)
||++++. .+.|+.||.||||..+|. -|+..|++|+. +..++|+..+..+ .+ -+.++..+..++.+|..
T Consensus 598 DgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGER 671 (790)
T KOG0056|consen 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER 671 (790)
T ss_pred cCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc
Confidence 9999754 568899999999988876 68888888762 2233333221111 11 12367778889999998
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|.+ |||||||||+|||+++++|.+++|||+||+||..+++.++..|.++++ ++|.|++.|++|. .-.+|.++++++
T Consensus 672 GLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~ 747 (790)
T KOG0056|consen 672 GLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISN 747 (790)
T ss_pred ccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeC
Confidence 876 999999999999999999999999999999999999999999999875 8999999999874 445799999996
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|..
T Consensus 748 -G~IvErG~H 756 (790)
T KOG0056|consen 748 -GRIVERGRH 756 (790)
T ss_pred -CeEeecCcH
Confidence 899999975
No 231
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=329.73 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=177.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378999999884 235899999999999999999999999999999999976421 2589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... .....
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 87642 134567999999998887 899999988654321 1122233445678888888854211111 12246
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 57889999999985 79
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14262 223 LIEYGPTR 230 (250)
T ss_pred EEEecCHH
Confidence 99999863
No 232
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=332.87 Aligned_cols=221 Identities=22% Similarity=0.250 Sum_probs=178.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999999884 23589999999999999999999999999999999998652 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
|.++.. ...++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+....... ...
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCc
Confidence 987642 2346789999999988885 99999988654321 11222333457788888888532111111 123
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 799999999986 57789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 244 ~i~~~g~~~ 252 (272)
T PRK14236 244 KLVEYGDTD 252 (272)
T ss_pred EEEecCCHH
Confidence 999999853
No 233
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=304.95 Aligned_cols=217 Identities=25% Similarity=0.381 Sum_probs=187.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++.+||+++| +++.+|+|+|.++++|.+++++|||||||||||.+++.+.+. .+|+|.++|.++.
T Consensus 2 I~i~nv~K~y-------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSY-------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhh-------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecc
Confidence 4566777666 456799999999999999999999999999999999987763 4899999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ..+.+.++..-|+......+||+|-+.|+.........+. +.+..++++++.++|.+..|+.. .+|||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~-eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQ 140 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-EDRRIINEAIEYLHLEDLSDRYL-----DELSGGQ 140 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCch-HHHHHHHHHHHHhcccchHHHhH-----Hhcccch
Confidence 3 4466778889999988889999999999744332223333 44567899999999999999874 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||.-||+.|+.+.+.++||||.++||-....++++.|++++++ |+|||++.||.+ ..-.+.|+++-|++ |+++..|
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~-G~vv~~G 218 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKN-GKVVKQG 218 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecC-CEEEecC
Confidence 99999999999999999999999999999999999999999876 999999999998 46778899999986 8999999
Q ss_pred CCCc
Q 001146 778 PLGR 781 (1140)
Q Consensus 778 ~~~~ 781 (1140)
++++
T Consensus 219 ~~~e 222 (252)
T COG4604 219 SPDE 222 (252)
T ss_pred CHHH
Confidence 9975
No 234
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=364.53 Aligned_cols=218 Identities=26% Similarity=0.332 Sum_probs=184.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 78999999884 24589999999999999999999999999999999998764 4899999998763
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ..++.++|++|++.+++.+||+||+.++...+.. ...+..+.+++++++++.+++.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245799999999999999999999886432210 11223334456789999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 67889999999985 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|++.+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 98864
No 235
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.1e-36 Score=323.82 Aligned_cols=211 Identities=23% Similarity=0.336 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 6789999987410 123569999999999999999999999999999999999876 35899999998764
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 622 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. ...++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+++.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 2 1245789999999999999999999998754321 1234444556889999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|+|+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999975 4689999999985 664
No 236
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.1e-36 Score=331.94 Aligned_cols=215 Identities=24% Similarity=0.259 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 619 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 488999999884 13589999999999999999999999999999999998764 47999999987
Q ss_pred ----cCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 001146 620 ----KKQE---T----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 685 (1140)
Q Consensus 620 ----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 685 (1140)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.+..++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2456899999973 5677899999976432111 1112233456788999999963 44443
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 567789999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
++|++ |++++.|++
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899999986
No 237
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=374.37 Aligned_cols=215 Identities=23% Similarity=0.323 Sum_probs=179.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..++++||+|+|+. +++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 405 (582)
T PRK11176 339 KGDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGH 405 (582)
T ss_pred CCeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCE
Confidence 347999999999952 224589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
+.+. ..+++.++||+|++.+++ .|++||+.++. +...++++ ++++++.+++. +-.|+.+|.
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCC
Confidence 8653 456788999999999887 79999998752 11233333 45555555543 445788886
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ +.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|+
T Consensus 477 ~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVE 552 (582)
T ss_pred CC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999999999874 4799999999985 578899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 553 ~-g~i~e~g~~~ 563 (582)
T PRK11176 553 D-GEIVERGTHA 563 (582)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 238
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.7e-37 Score=382.74 Aligned_cols=213 Identities=26% Similarity=0.403 Sum_probs=176.0
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+.+ +++++|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 476 ~~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~ 543 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGV 543 (711)
T ss_pred CCeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCE
Confidence 3579999999999632 124689999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++++ ..+++.++||+|++.+++ .|++||+.++. ++.+++ .+.++++..++.+ -.|+.+|.
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 8754 456788999999999886 79999998752 122332 2456666666543 35677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|+||+||||||+||+++++.+.+ .. ..+++|+|+++|+++ ..+.+|+|++|+
T Consensus 614 ~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999988 22 235899999999985 467899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 688 ~-G~ive~Gt~~ 698 (711)
T TIGR00958 688 K-GSVVEMGTHK 698 (711)
T ss_pred C-CEEEEeeCHH
Confidence 5 8999999863
No 239
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=365.36 Aligned_cols=219 Identities=25% Similarity=0.314 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 488999999884 24589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHcc--C-C-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR--L-S-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~--~-~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
... ..++.++|++|++.+++.+||+||+.++.... . . .....++.+++++++++.+|+.+..++.+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12356999999999999999999998753211 0 0 00122334456789999999987777654 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999986 57789999999985 89
Q ss_pred EEEECCCCc
Q 001146 773 EIYVGPLGR 781 (1140)
Q Consensus 773 ~~~~g~~~~ 781 (1140)
+++.|++++
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998764
No 240
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-36 Score=327.83 Aligned_cols=220 Identities=20% Similarity=0.249 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478999999884 135899999999999999999999999999999999986642 2369999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+...... .....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87632 2346789999999988875 999999987543211 112223345677788888753211111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57788999999985 79
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999863
No 241
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=330.78 Aligned_cols=220 Identities=23% Similarity=0.284 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
.++++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 589999999985 245899999999999999999999999999999999986531 3589999999
Q ss_pred cccCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 618 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 618 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....++.+..+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234667999999998888 899999987643221 12333334456788898988643221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 67889999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999863
No 242
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-36 Score=332.74 Aligned_cols=216 Identities=20% Similarity=0.267 Sum_probs=175.9
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~ 616 (1140)
..++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3589999999884 1348999999999999999999999999999999999643 1 0258999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++. ||.||+.+....+.. ......++.+.++++.+++. +..+..
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 987532 1346679999999988874 999999987543211 12222344567788888874 222332
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 577889999999
Q ss_pred ecCCEEEEECCC
Q 001146 768 KRGGQEIYVGPL 779 (1140)
Q Consensus 768 ~~gg~~~~~g~~ 779 (1140)
++ |+++..|+.
T Consensus 255 ~~-G~i~~~g~~ 265 (286)
T PRK14275 255 YE-GVLVEHAPT 265 (286)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999985
No 243
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=327.71 Aligned_cols=215 Identities=24% Similarity=0.324 Sum_probs=175.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC--c-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 617 (1140)
.++++|++++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 488999999884 23589999999999999999999999999999999998642 1 2589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87632 234567999999988886 799999987644321 1122223345778888888842 2232
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 2457999999999999999999999999999999999999999999999854 799999999986 5788899999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
No 244
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.2e-36 Score=328.97 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=175.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc--eEEEEEEEcC
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISG 617 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g 617 (1140)
..++++|++++|. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3589999999872 23799999999999999999999999999999999987641 1589999999
Q ss_pred cccCcccc-cceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCC
Q 001146 618 YPKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVGLPGV 691 (1140)
Q Consensus 618 ~~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~g~~~~ 691 (1140)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ...+ ++.++++++.+++.+. .+.. .
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPAD--DATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CChH--HHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 88753322 357999999974 4566899999876543221 1111 2457889999999762 3333 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999986 57788999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 899999886
No 245
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.2e-36 Score=330.51 Aligned_cols=225 Identities=25% Similarity=0.339 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.|+..+ ..+ ...++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 78999999885200 000 00135689999999999999999999999999999999998763 5899999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
. ...++.++|++|++ .+.+..|+.|++.+...... .....+....++++++.+++. +..+.. .+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 46677999999876532111 123334445688999999996 455554 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.+.+|++++|.+ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57788999999985 8
Q ss_pred EEEEECCCCc
Q 001146 772 QEIYVGPLGR 781 (1140)
Q Consensus 772 ~~~~~g~~~~ 781 (1140)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998754
No 246
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.9e-36 Score=319.85 Aligned_cols=201 Identities=23% Similarity=0.290 Sum_probs=172.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 489999998874 23589999999999999999999999999999999998764 479999999877
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.....++.++|++|++.+++.+|++||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345568999999988888999999988654321 11 1234578889999987766653 569999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|+++ ++.+.+|++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 6889999999986
No 247
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=327.72 Aligned_cols=219 Identities=24% Similarity=0.259 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 488999999884 235899999999999999999999999999999999975421 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .||+||+.+....+.. ....+.++.++++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 234567999999998888 4999999987544321 1222334457788888887532111111 1245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 57788999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9999886
No 248
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=329.58 Aligned_cols=214 Identities=22% Similarity=0.280 Sum_probs=175.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3589999999884 23589999999999999999999999999999999998642 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++. ||+||+.+....+. ... +.++.++++++.+++.+ ..+..
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 987532 2346789999999888875 99999988654331 122 23345788899998853 22332
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE-E
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-L 766 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~-~ 766 (1140)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+||++ +
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~ 252 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVF 252 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999876 489999999986 5778899975 5
Q ss_pred EecCCEEEEECCC
Q 001146 767 MKRGGQEIYVGPL 779 (1140)
Q Consensus 767 l~~gg~~~~~g~~ 779 (1140)
|+ +|+++..|+.
T Consensus 253 l~-~G~i~~~g~~ 264 (285)
T PRK14254 253 LT-GGELVEFDDT 264 (285)
T ss_pred ee-CCEEEEeCCH
Confidence 66 5899999875
No 249
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.2e-36 Score=325.21 Aligned_cols=201 Identities=24% Similarity=0.312 Sum_probs=166.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc--eEEEEEEEcCcccCcccc-cceEEEeccCCC--CCCCCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 643 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 643 (1140)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 479999999999999999999999999999999987631 158999999988654322 357999999974 557789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+.|++.+...... ...+..++.++++++.+++.+ ..+.. ++.|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987653321 112233456789999999973 33443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999986 67789999999985 899999875
No 250
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=329.95 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 617 (1140)
-++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 489999999884 2358999999999999999999999999999999999642 1 13589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1345679999999988874 99999987643221 1112222345677888888742 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5788999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 899999985
No 251
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8e-36 Score=321.74 Aligned_cols=192 Identities=27% Similarity=0.355 Sum_probs=160.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcH
Confidence 457799999999999999999999999999999999998763 48999999976421 1112334567999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+||+.+...... ...++.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988754321 223334456788899999987777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 725 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 57788999999985 7888765
No 252
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-36 Score=332.28 Aligned_cols=219 Identities=22% Similarity=0.388 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 588999999884 123589999999999999999999999999999999998764 489999999876
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 621 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997652 234788988654211000 00111222345678899999987777654 569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |+++..|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 678899999776 4 7999999
Q ss_pred CCCc
Q 001146 778 PLGR 781 (1140)
Q Consensus 778 ~~~~ 781 (1140)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8753
No 253
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.8e-36 Score=330.92 Aligned_cols=210 Identities=25% Similarity=0.400 Sum_probs=164.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 367899988741 124589999999999999999999999999999999998764 4799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++.+++ .||+||+.+... ....+... ...++.++.+ ++.+..+. ..
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 234667999999987765 799999976421 11111100 1122333333 33322222 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++ +.+|++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999986 45 56999999985 8
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
++++.|++
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 99999985
No 254
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=284.65 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.|..+++++.|. ..++|-|++++.+.||.+.++||||||||||++.|.=+.. +.+|+..+.|...
T Consensus 2 sirv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 467888888874 3457999999999999999999999999999999975444 3478888877543
Q ss_pred C------c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 001146 621 K------Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 691 (1140)
+ + ..+|+.+|+|+|...++|.+||.||+.-+. ++. .+.++++.+.+..++++.+.|.+.+|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 2 1 346788999999999999999999996542 221 24566677777899999999999998763
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++++.+++++..|.|-+++||... -..+.+.+|+.|.+ |
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~-g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeec-C
Confidence 359999999999999999999999999999999999999999999999999999999999875 35678899999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 218 ~ive~g~a~ 226 (242)
T COG4161 218 HIVEQGDAS 226 (242)
T ss_pred eeEeecchh
Confidence 999999864
No 255
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.6e-36 Score=371.20 Aligned_cols=212 Identities=22% Similarity=0.352 Sum_probs=179.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|++|+|+. ++++|+|+|+++++||.+||+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 338 ~~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~ 403 (592)
T PRK10790 338 SGRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGR 403 (592)
T ss_pred CCeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCE
Confidence 357999999999951 13489999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++++ ..+++.++||+|++.+++ .|++||+.++. ..+++ .++++++.+|+.+ -.|+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccC
Confidence 8753 467889999999999998 59999998852 22332 2566777776553 34677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ....+|+|++|+
T Consensus 473 ~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE
Confidence 44 56999999999999999999999999999999999999999999998754 799999999984 567899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 549 ~-G~i~~~G~~~ 559 (592)
T PRK10790 549 R-GQAVEQGTHQ 559 (592)
T ss_pred C-CEEEEEcCHH
Confidence 5 8999999864
No 256
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=329.32 Aligned_cols=216 Identities=19% Similarity=0.233 Sum_probs=175.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 616 (1140)
.-++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3689999999884 235899999999999999999999999999999999975421 247999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 687 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 687 (1140)
|.++.. ...++.++|++|++.+++. ||.||+.+....+. ... ..++.+++.++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987632 2345689999999888874 99999988654321 111 12234567778777642 22322
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 688899999999
Q ss_pred e--------cCCEEEEECCCC
Q 001146 768 K--------RGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~--------~gg~~~~~g~~~ 780 (1140)
+ +.|+++..|+++
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred ecccccccccCceEEEeCCHH
Confidence 7 258999999973
No 257
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.8e-36 Score=360.45 Aligned_cols=220 Identities=22% Similarity=0.340 Sum_probs=182.9
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 67899999884 24589999999999999999999999999999999998764234899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCC
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 695 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~LS 695 (1140)
.. ..++.++|++|++.+++.+||+||+.+........ ....++.+++++++++.+++.+.. +.. ++.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 12456999999998999999999998864332111 122333445678999999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 67788999999985 79999
Q ss_pred ECCCCc
Q 001146 776 VGPLGR 781 (1140)
Q Consensus 776 ~g~~~~ 781 (1140)
.|++++
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998764
No 258
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=326.07 Aligned_cols=219 Identities=24% Similarity=0.309 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--Cc-eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 617 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 488999999884 2358999999999999999999999999999999999753 21 2479999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++........ ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcc
Confidence 87631 234567999999998888 7999999886543211 112222334567777777642111111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 57789999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 9999875
No 259
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.5e-36 Score=317.28 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=166.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 57889998874 24589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.+++.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999989999999999988754321 1 1234578899999998766665 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
||++|||||+++|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.-+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 454544566554
No 260
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.7e-36 Score=360.95 Aligned_cols=212 Identities=21% Similarity=0.308 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999884 23589999999999999999999999999999999998764 489999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... . .++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 234689999999999999999999875311 1223455788999999987777654 56999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 57789999999985 899999
Q ss_pred CCCCc
Q 001146 777 GPLGR 781 (1140)
Q Consensus 777 g~~~~ 781 (1140)
|++++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98754
No 261
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.5e-36 Score=323.11 Aligned_cols=210 Identities=22% Similarity=0.356 Sum_probs=171.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 488999999874 23589999999999999999999999999999999998763 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...+.. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 234567899999988887 5999999876443211 11 123467899999995 344544 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|.|||+++|+++ ++ +.+|++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 4899999999986 45 56999999964444555
Q ss_pred ECC
Q 001146 776 VGP 778 (1140)
Q Consensus 776 ~g~ 778 (1140)
+|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 554
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.1e-36 Score=316.48 Aligned_cols=196 Identities=27% Similarity=0.341 Sum_probs=167.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 35788988874 23589999999999999999999999999999999998764 4899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|++||+.+.... . .++.++++++.+++.+..++. .+.||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHH
Confidence 2 23566799999999888899999999875311 1 123468899999998776665 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++...+|+++.+
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999999998777999999999986 577889999877
No 263
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.9e-35 Score=324.50 Aligned_cols=221 Identities=24% Similarity=0.293 Sum_probs=176.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 489999999884 2358999999999999999999999999999999999731124589999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..+.++++++.+++. +..+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999999875432110 0111222335577889999986 34444321
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 770 (1140)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 249999999999999999999999999999999999999999999998877999999999976 35555 899999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 8999999874
No 264
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-35 Score=372.91 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=177.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 457999999999952 224589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++. +-.|+.+|.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCHHH----HHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8754 457788999999998886 69999998742 1233332 34445554443 335777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|+
T Consensus 590 ~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999874 5899999999986 456799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 666 ~-G~i~~~g~~~ 676 (694)
T TIGR01846 666 K-GQIAESGRHE 676 (694)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 265
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=324.57 Aligned_cols=220 Identities=19% Similarity=0.220 Sum_probs=178.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEE
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 615 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 615 (1140)
+..+..+++++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 6 ~~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 34578888887763 346899999999999999999999999999999999986531 25899999
Q ss_pred cCcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 616 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 616 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+|.++.. ...++.++|++|++.++ .+|+.||+.+....+. .. .+.++.++++++.+++.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9987632 23456799999998877 5999999998764431 11 2233467888999998543222211 13
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe--
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-- 768 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-- 768 (1140)
.+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|+++ ++.+.+||+++|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVD 224 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 46799999999999999999999999999999999999999999999985 4799999999986 5788999999996
Q ss_pred -----cCCEEEEECCC
Q 001146 769 -----RGGQEIYVGPL 779 (1140)
Q Consensus 769 -----~gg~~~~~g~~ 779 (1140)
++|+++..|+.
T Consensus 225 ~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 225 ISQGTRTGYLVEMGPT 240 (261)
T ss_pred cccccCCceEEEeCCH
Confidence 35899999986
No 266
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=341.66 Aligned_cols=224 Identities=22% Similarity=0.292 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc--eEEEEEEEcCc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGY 618 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 618 (1140)
-++++|++.+|... .+...+++||||++.+||++||+|.|||||||+.++|.|..+++ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 48899999988643 12357999999999999999999999999999999999976544 35799999998
Q ss_pred ccCc---c----cccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 619 PKKQ---E----TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~---~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++.. . ...+.++|++|++ .+-|.+|+.+.+.-....+.. .+.++.++++.++++.++|.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6532 1 1346799999996 566778999888766555532 2366677788999999999876654 22
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.+++|||++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 3578999999999999999999999999999999999999999999999974 5999999999997 4789999999999
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 230 ~-G~iVE~G~~~ 240 (539)
T COG1123 230 K-GEIVETGPTE 240 (539)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999974
No 267
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=328.36 Aligned_cols=215 Identities=21% Similarity=0.217 Sum_probs=173.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 617 (1140)
-++++|+++.|+. +.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~~-------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYGE-------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEECC-------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 5899999998841 348999999999999999999999999999999999764 1 13589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~ 688 (1140)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++. +..+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~---- 163 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHD---- 163 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhc----
Confidence 87631 234567999999988887 599999998654321 111222234456777776542 22222
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|+++ ++.+.+|++++|+
T Consensus 164 -~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 164 -NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 2457999999999999999999999999999999999999999999999865 799999999986 5778999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 899999985
No 268
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=328.14 Aligned_cols=218 Identities=19% Similarity=0.223 Sum_probs=174.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++||+++|. ++++|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999999884 235899999999999999999999999999999999975321 2579999999
Q ss_pred cccC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++. ....++.++|++|++.+++ .|++||+.+....+. .. .+.++.++++++.+++.+..+... .....
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 8763 1234567999999988887 599999988654321 11 122344567777777743111111 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec---
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 769 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~--- 769 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999986 68899999999972
Q ss_pred -----CCEEEEECCC
Q 001146 770 -----GGQEIYVGPL 779 (1140)
Q Consensus 770 -----gg~~~~~g~~ 779 (1140)
.|+++..|++
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999986
No 269
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=335.69 Aligned_cols=226 Identities=29% Similarity=0.446 Sum_probs=190.5
Q ss_pred CCCcccCCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceE
Q 001146 530 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 609 (1140)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~ 609 (1140)
...+..|.+.+.+..+++++. +| ..++++|+|+||.+.+||.+||+||||||||||.|+|.|.-. +.
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~---PP--------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~ 389 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAA---PP--------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PT 389 (580)
T ss_pred cCCCCCCCCCceeeEeeeeec---CC--------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cC
Confidence 345677878889999999983 22 245679999999999999999999999999999999999766 45
Q ss_pred EEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH-----HHHHHHHHHHHHcCCccc
Q 001146 610 TGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE-----TRKMFIDEVMELVELNPL 681 (1140)
Q Consensus 610 ~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~ 681 (1140)
+|.|.+||.+.++ +.+-+++||.||+-.+|+ -||.||+.- ..++.+.+ .|.+.++|++ +.+.+-
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~G 461 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQG 461 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCC
Confidence 8999999998754 457789999999988887 799999952 22223322 2333445554 356778
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 001146 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 682 ~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 761 (1140)
.||.+|..+ ..||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+
T Consensus 462 YdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~ 538 (580)
T COG4618 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASV 538 (580)
T ss_pred ccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhc
Confidence 899999765 579999999999999999999999999999999999999999999999999999999999986 68899
Q ss_pred ceEEEEecCCEEEEECCCC
Q 001146 762 DELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 762 d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+|++|+ +|++-.+||.+
T Consensus 539 Dkilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 539 DKILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred ceeeeec-CChHHhcCCHH
Confidence 9999998 58999999984
No 270
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.7e-36 Score=378.52 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=177.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. .++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 475 ~~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~ 541 (710)
T TIGR03796 475 SGYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGI 541 (710)
T ss_pred CCeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 357999999999962 124589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++.+ -.|+.+|.
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPDAD----LVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCHHH----HHHHHHHhCCHHHHHhCcCcccceecc
Confidence 8743 457889999999999886 79999998641 1233332 445566555543 45677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.| ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|++ .++|+|++||+++ ....+|||++|+
T Consensus 612 ~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 57999999999999999999999999999999999999999999975 4899999999985 467799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 686 ~-G~i~~~G~~~ 696 (710)
T TIGR03796 686 R-GKVVQRGTHE 696 (710)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
No 271
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-36 Score=307.95 Aligned_cols=170 Identities=27% Similarity=0.423 Sum_probs=150.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 35788988874 13589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++.+|+.||+. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 3 234567999999998888899999873 999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999999999999999999999999999999999877899999999986 57778999999986 54
No 272
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=358.01 Aligned_cols=217 Identities=27% Similarity=0.331 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 488999999884 23589999999999999999999999999999999998763 489999999876
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.. ...++.++|++|++.+++.+||+||+.+.............+.+++++++++.+++.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 124567999999999999999999998853211111122333445678999999998666654 357999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 67788999999985 798877
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 764
No 273
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=323.95 Aligned_cols=220 Identities=22% Similarity=0.290 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc----eEEEEEEEc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITIS 616 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~----~~~G~i~~~ 616 (1140)
.+.++|+++++. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. .+.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 388999999874 245899999999999999999999999999999999986532 123566666
Q ss_pred CcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCC
Q 001146 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVS 692 (1140)
Q Consensus 617 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~ 692 (1140)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+.. +.... ..+
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ 152 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS--PAS 152 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC--Ccc
Confidence 665421 2346779999999999999999999998754321 112333445678899999986421 11111 235
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+.||++++|++ |+
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~ 229 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GE 229 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 699999999986 57789999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+.+
T Consensus 230 i~~~g~~~ 237 (257)
T PRK14246 230 LVEWGSSN 237 (257)
T ss_pred EEEECCHH
Confidence 99999863
No 274
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=6.9e-36 Score=322.55 Aligned_cols=210 Identities=26% Similarity=0.398 Sum_probs=169.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 4789999998741 123589999999999999999999999999999999998763 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGV 691 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g------~~~~ 691 (1140)
.. ...++.++|++|++.+++ .|+.||+.+... ... ++.++++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 234567999999998877 699999976421 111 1235677788888765554321 1123
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. . .+.+|++++|++ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998764 89999999986 3 479999999985 7
Q ss_pred EEEEEC
Q 001146 772 QEIYVG 777 (1140)
Q Consensus 772 ~~~~~g 777 (1140)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 887654
No 275
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-35 Score=321.73 Aligned_cols=219 Identities=19% Similarity=0.253 Sum_probs=177.6
Q ss_pred cEEEEEeEEEEEecCc----hhhh---cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEE
Q 001146 540 HSLTFDEVVYSVDMPE----EMKV---QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 612 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~ 612 (1140)
+.++++||+..|.... ..+. ......++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceE
Confidence 5688999988776532 1111 01122456799999999999999999999999999999999998764 4799
Q ss_pred EEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 613 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 613 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
|.++|. +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+.. .+
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 345667776777899999998765432 123344445567888888888766654 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.+|++++|++ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999998777999999999976 57788999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+.+
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 99999864
No 276
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-35 Score=325.03 Aligned_cols=215 Identities=26% Similarity=0.278 Sum_probs=173.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 619 (1140)
-++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 378999999884 13479999999999999999999999999999999998764 48999999976
Q ss_pred ----cCc---c----cccceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 001146 620 ----KKQ---E----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 685 (1140)
Q Consensus 620 ----~~~---~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 685 (1140)
+.. . ..++.++|++|++. +.+.+|+.||+.+...... .....+.++.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999874 4456799999875432111 0111123456788999999963 45544
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 577789999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
++|++ |+++..|++
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 899999875
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=357.61 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=179.5
Q ss_pred EeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--
Q 001146 545 DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-- 622 (1140)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-- 622 (1140)
+|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++..
T Consensus 2 ~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 2 SNISKSFP-------------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKS 66 (491)
T ss_pred CceEEEeC-------------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCC
Confidence 56777763 24689999999999999999999999999999999998764 48999999987642
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 623 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 623 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
...++.++|++|++.+++.+||+||+.+..........+.++..+.++++++.+++.+..+..+ ..|||||||
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 141 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQ 141 (491)
T ss_pred HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHH
Confidence 1235679999999988899999999987532111101123333456788999999987666653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++.
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLA 219 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChh
Confidence 999999999999999999999999999999999999999878999999999986 67789999999985 8999999876
Q ss_pred c
Q 001146 781 R 781 (1140)
Q Consensus 781 ~ 781 (1140)
+
T Consensus 220 ~ 220 (491)
T PRK10982 220 G 220 (491)
T ss_pred h
Confidence 4
No 278
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-36 Score=326.40 Aligned_cols=210 Identities=24% Similarity=0.320 Sum_probs=166.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++. .++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhh
Confidence 367899988742 113589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHc--CCcccccccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-----KMFIDEVMELV--ELNPLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++.+++ .||+||+.+.... ...... ...+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988876 6999999875321 111111 11234444444 444433332 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++. .||++++|++ |
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~-G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLED-G 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999986 454 4999999986 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|+.
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 99988875
No 279
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-35 Score=327.21 Aligned_cols=211 Identities=18% Similarity=0.266 Sum_probs=173.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|+. +...+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 5889999999852 12348999999999999999999999999999999999875 269999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------g~~~ 690 (1140)
.. ...++.++|++|++.+++ .|++||+.... .... +.+.+.++.+||.+..+... +. +
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~ 135 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-G 135 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-C
Confidence 43 345678999999999987 59999996321 1122 23567778888876544432 22 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||||+++|+||+|||||++||+.+...+.+.|+++. +++|||+++|+++ .+ ..+||+++|++
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~- 211 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE- 211 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-
Confidence 35699999999999999999999999999999999999999999999874 4899999999985 44 45999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|++++.|++++
T Consensus 212 G~i~~~g~~~~ 222 (275)
T cd03289 212 NKVRQYDSIQK 222 (275)
T ss_pred CeEeecCCHHH
Confidence 89999999753
No 280
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.1e-35 Score=321.90 Aligned_cols=220 Identities=25% Similarity=0.292 Sum_probs=172.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..+..+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 67899999884 23589999999999999999999999999999999998421145899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHH-ccC--C-CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAW-LRL--S-PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 692 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 692 (1140)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . ......+.++.+++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 31 1 23568999999988888887777654321 110 0 0011222345677888988885 3444432 13
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999998877899999999976 45555 899999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
++++.|+.+
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999863
No 281
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=322.40 Aligned_cols=220 Identities=21% Similarity=0.266 Sum_probs=177.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc--C-ceEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 617 (1140)
.++++||++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 378999999874 2458999999999999999999999999999999999743 1 12589999999
Q ss_pred cccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 001146 618 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 692 (1140)
Q Consensus 618 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 692 (1140)
.++.. ...++.++|++|++.+++. |++||+.+...... ..+.+..++++.++++.+++.+...... .....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87642 2345679999999988874 99999987643221 1122333456788888888754211111 12245
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999854 899999999986 68889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999863
No 282
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-36 Score=324.45 Aligned_cols=210 Identities=26% Similarity=0.401 Sum_probs=166.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 5789999998741 12489999999999999999999999999999999998764 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~g~~~ 690 (1140)
.. ...++.++|++|++.+++. |++||+.+... ....+ .+++.++.+++.+..+.. .+ ..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATDE----EVIEAAKEAGAHDFIMKLPNGYDTVLG-EN 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCHH----HHHHHHHHhChHHHHHhCcccccCHhh-cC
Confidence 42 2346679999999888775 99999986521 11111 133344444443322211 11 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.+|++++|++
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD- 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-
Confidence 46799999999999999999999999999999999999999999999985 5899999999986 44 56999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|++++.|+.
T Consensus 213 g~~~~~~~~ 221 (229)
T cd03254 213 GKIIEEGTH 221 (229)
T ss_pred CeEEEeCCH
Confidence 799988874
No 283
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=336.74 Aligned_cols=228 Identities=25% Similarity=0.368 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++.+|++.+++ ..++|+||||++++||++||+|.||||||||+|+|+|.+.+ .+|+|.++|++.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEc
Confidence 478999998874 35689999999999999999999999999999999998774 589999999986
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ......|+.|.|+..+.|+|||.||+.++...+. ..-.+...-++...++++.+++....++.+ ..||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 43 2345678999999999999999999988765443 223455566677889999999864466665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
+||||.|+|||||..+++||+||||||.|+......+.+.+++++++|.++|++||.++ +++++|||+.+|.+ |+.+-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999985 89999
Q ss_pred ECCC-Ccc-hhHHHHHH
Q 001146 776 VGPL-GRH-SCHLISYF 790 (1140)
Q Consensus 776 ~g~~-~~~-~~~~~~~f 790 (1140)
.++. .+. ..+++...
T Consensus 226 ~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 226 TRPTAAETSEDELVRLM 242 (500)
T ss_pred ecccccCCCHHHHHHHh
Confidence 9984 432 23444443
No 284
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.2e-36 Score=326.35 Aligned_cols=211 Identities=27% Similarity=0.381 Sum_probs=163.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. +++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehh
Confidence 3678999887411 124589999999999999999999999999999999998763 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~g~~~~ 691 (1140)
. ...++.++|++|++.+++ .||+||+.+....+ ..++... .+.+.++.+ ++....+. ..
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 137 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RG 137 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CC
Confidence 2 233567999999988776 69999998743211 1111100 112222222 22222222 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++ +.||++++|++ |
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G 213 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-G 213 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999987 7999999999986 45 48999999986 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
++++.|+.
T Consensus 214 ~i~~~~~~ 221 (238)
T cd03249 214 QVVEQGTH 221 (238)
T ss_pred EEEEeCCH
Confidence 99998875
No 285
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-35 Score=313.75 Aligned_cols=197 Identities=28% Similarity=0.378 Sum_probs=165.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 78899998874 23589999999999999999999999999999999998763 4899999998753
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
....++.++|++|++.+++.+|++||+.+....+. .. ++.++++++.+++.+..+... +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999999888889999999987654321 11 123688999999987665543 5799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|+|+++|++. ++.+ |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998777999999999986 3444 8887774
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-35 Score=363.02 Aligned_cols=217 Identities=26% Similarity=0.385 Sum_probs=175.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|++|+|+. +++++|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 314 ~~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~ 380 (544)
T TIGR01842 314 EGHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGA 380 (544)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCE
Confidence 346999999999952 124589999999999999999999999999999999998774 4899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCcccccccccCCC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
++.. ..+++.++||+|++.+++. |++||+.+.. +..++++-. ...++.++.+ .+-.|+.+|..
T Consensus 381 ~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~- 451 (544)
T TIGR01842 381 DLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG- 451 (544)
T ss_pred ehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-
Confidence 8643 3467889999999999874 9999998532 122333211 1122333332 22346666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.++|+|+|+++|+++ ..+.+|++++|++
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~- 528 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD- 528 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 3569999999999999999999999999999999999999999999988666899999999985 4678999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 529 G~i~~~g~~~ 538 (544)
T TIGR01842 529 GRIARFGERD 538 (544)
T ss_pred CEEEeeCCHH
Confidence 8999999863
No 287
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-35 Score=322.22 Aligned_cols=221 Identities=20% Similarity=0.218 Sum_probs=175.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEE
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 615 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 615 (1140)
+..++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34589999999884 235899999999999999999999999999999999976532 25899999
Q ss_pred cCcccC-------cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 616 SGYPKK-------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 616 ~g~~~~-------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
+|.+.. ....++.++|++|++.+++. |++||+.+....... ...+..++.++++++.+++.+.......
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~- 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLG- 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHh-
Confidence 997642 12346679999999988885 999999876542211 1112223456777787776421111111
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.....||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++++|+
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~ 234 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY 234 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 12357999999999999999999999999999999999999999999999865 699999999986 5778999999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|+.
T Consensus 235 ~-G~i~~~g~~ 244 (265)
T PRK14252 235 M-GELIEFGAT 244 (265)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
No 288
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-34 Score=327.62 Aligned_cols=203 Identities=20% Similarity=0.365 Sum_probs=168.3
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccC---CCCCCCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFV 642 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~l 642 (1140)
++|+||++++||+++|-|-=|||+|-|+++|.|..+ ..+|+|.+||+++... ..+..++|||.| +-+++.+
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 789999999999999999999999999999999655 3489999999987542 345679999987 4578889
Q ss_pred CHHHHHHHHHHccCC-C-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 643 TIYESLLFSAWLRLS-P-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+|+||+.++...+.. . -.+....++.+++..+.+++....-. ..+..||||.+|||.|||.|..+|++|+||||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVvlarwL~~~p~vLilDEP 428 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVVLARWLATDPKVLILDEP 428 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHHHHHHHhcCCCEEEECCC
Confidence 999999887322211 1 24444455677888998887532211 12467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|.|.|.-++.++.+.+++++++|++||+++-++. |+..+||||++|++ |+++-.=+.+
T Consensus 429 TRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 429 TRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred CcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 9999999999999999999999999999999985 89999999999995 8988754443
No 289
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4e-35 Score=321.45 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=168.4
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
+|+|+||++++||+++|+||||||||||+++|+|..+ . +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999999999999999999999999864 2 7999999987643 22345689999998888889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCcEeEEe
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 718 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~-------~p~illlD 718 (1140)
||+.+..... ...++.++.++++++.+++.+..+.. ++.||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 12223345678999999998766665 35799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 719 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999998877999999999986 57889999999985 8999999864
No 290
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.8e-35 Score=310.93 Aligned_cols=195 Identities=24% Similarity=0.300 Sum_probs=162.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcc
Confidence 35788888774 24689999999999999999999999999999999998764 4899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQ 133 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHH
Confidence 2 2245678999999888888999999987654321 1 1 234678899999987766653 56999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++.. + .+++++.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 99999999999999999999999999999999999999987779999999999752 2 3466653
No 291
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.8e-35 Score=309.93 Aligned_cols=179 Identities=26% Similarity=0.334 Sum_probs=150.2
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-----ccccceEEEeccCCC-CC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HS 639 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 639 (1140)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 34689999999999999999999999999999999998764 48999999987631 124567999999973 23
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
...||+||+.+..... ....++.++.++++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3479999999865432 1233334456788999999987776653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
||+|||+.+++.+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
No 292
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-35 Score=306.23 Aligned_cols=170 Identities=29% Similarity=0.421 Sum_probs=150.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++++ ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 36789988874 23589999999999999999999999999999999998763 4899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 622 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 622 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. ...++.++|++|++.+++.+|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23457899999999888889999987541 999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||||++|||||+++|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 9999999999999999999999999999999999999999999876 899999999986 56778999999986
No 293
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.4e-35 Score=315.80 Aligned_cols=210 Identities=23% Similarity=0.277 Sum_probs=167.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc--Cc-
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS--GY- 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 618 (1140)
++++|+++.|+.... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 678999998852100 00124699999999999999999999999999999999998764 47999998 42
Q ss_pred -ccCc---cc----ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 001146 619 -PKKQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLP 689 (1140)
Q Consensus 619 -~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~ 689 (1140)
+... .. .++.++|++|++.+++.+||+|++.+..... ....+..++.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1356899999999999999999998764322 12233334567889999999753 3433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999998777999999999964 4667899998763
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7e-35 Score=354.47 Aligned_cols=216 Identities=22% Similarity=0.264 Sum_probs=177.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC----
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---- 617 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g---- 617 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|..+..+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 46789998873 2458999999999999999999999999999999999752113479999872
Q ss_pred -------------------cccC----------c---ccccceEEEeccC-CCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 001146 618 -------------------YPKK----------Q---ETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSET 664 (1140)
Q Consensus 618 -------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~ 664 (1140)
.++. . ...++.++|++|+ +.+++.+||+||+.+..... ....++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 2110 0 1234678999997 67888899999999865432 123334
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CC
Q 001146 665 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 743 (1140)
Q Consensus 665 ~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g 743 (1140)
.+++++++++.+++.+..+.. ++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 456788999999998776665 357999999999999999999999999999999999999999999999865 48
Q ss_pred CEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 744 RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 744 ~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+|||++||++. .+.+.||++++|++ |++++.|+++
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 99999999986 57789999999985 7999988764
No 295
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=325.66 Aligned_cols=223 Identities=23% Similarity=0.299 Sum_probs=176.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC---ceEEEEEEEc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 616 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 616 (1140)
..++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999999884 23589999999999999999999999999999999997642 1358999999
Q ss_pred CcccCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC---------CCC-HHHHHHHHHHHHHHcCCccc
Q 001146 617 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP---------EVD-SETRKMFIDEVMELVELNPL 681 (1140)
Q Consensus 617 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~~~l~~~ 681 (1140)
|.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 987642 134567999999988887 59999999865422100 011 12234557888888887532
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 001146 682 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 682 ~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 761 (1140)
.+.... ...+.||||||||++|||||+++|+||||||||+|||+.++..+.+.|+++++ ++|+|+++|+++ .+.+++
T Consensus 190 ~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~ 266 (305)
T PRK14264 190 VNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARIS 266 (305)
T ss_pred hhHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhc
Confidence 211111 12467999999999999999999999999999999999999999999999876 589999999986 577899
Q ss_pred ceEE-EEecCCEEEEECCCC
Q 001146 762 DELF-LMKRGGQEIYVGPLG 780 (1140)
Q Consensus 762 d~v~-~l~~gg~~~~~g~~~ 780 (1140)
|+++ +|+ +|+++..|+++
T Consensus 267 d~i~~~l~-~G~i~~~g~~~ 285 (305)
T PRK14264 267 DQTAVFLT-GGELVEYDDTD 285 (305)
T ss_pred CEEEEEec-CCEEEEeCCHH
Confidence 9974 667 48999999863
No 296
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.7e-35 Score=306.27 Aligned_cols=171 Identities=24% Similarity=0.416 Sum_probs=150.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++++ +|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 37788888765 59999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQE----TFARISGYCEQND---IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
... ..++.++|++|++ .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 431 2456799999984 57888999999976420
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 9999999999999999999999999999999999999999999998777899999999986 68889999999986 55
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-34 Score=381.29 Aligned_cols=215 Identities=22% Similarity=0.360 Sum_probs=171.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc-Cc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GY 618 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~ 618 (1140)
..++++||+|+|+.+ .++++|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 381 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i~~g~ 448 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIIINDSH 448 (1466)
T ss_pred CcEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEEeCCc
Confidence 379999999999632 123589999999999999999999999999999999998774 58999995 56
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHc-cC--------CC----------------------------
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL--------SP---------------------------- 658 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~--------~~---------------------------- 658 (1140)
++.. ..+|+.++||+|++.+++ .|++||+.++... +. ..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 6533 346788999999999987 5999999986310 00 00
Q ss_pred --CCC---------HHHHHHHHHHHHHHcCCcc-------cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 659 --EVD---------SETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 659 --~~~---------~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
... ....++.+.++++.+++.+ ..||.+|..+ ..||||||||++|||||+++|+||+||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g-~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA-SKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 000 0011234666777776554 3466677653 56999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 721 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
||+||+.++..+++.|+++.+ +|+|+|+++|+++ ..+.+|++++|++|
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 999999999999999999875 5899999999986 34789999999863
No 298
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.7e-35 Score=359.67 Aligned_cols=189 Identities=28% Similarity=0.443 Sum_probs=159.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 332 ~~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~ 397 (529)
T TIGR02868 332 KPTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGV 397 (529)
T ss_pred CceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 357999999999962 12489999999999999999999999999999999998874 4899999998
Q ss_pred ccC--cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 001146 619 PKK--QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~ 689 (1140)
+++ ...+|+.++||+|++.+++ .|++||+.++. ++.++++ ++++++..+++ +-.||.+|..
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDATDEE----LWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EhhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCCHHH----HHHHHHHcCCHHHHHhCcccccchhccc
Confidence 765 3456789999999999887 69999999852 2233332 45666666654 3457888875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
| ..||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++. +++|+|+++|++
T Consensus 468 G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 468 G-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5 4699999999999999999999999999999999999999999998763 589999999984
No 299
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9.7e-35 Score=307.79 Aligned_cols=184 Identities=25% Similarity=0.299 Sum_probs=155.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 36789998874 23589999999999999999999999999999999998421145899999998864
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. . .++.++|++|++.+++..|+++++. .. .+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHH
Confidence 31 1 2345999999988888888877660 00 1359999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHH-hhceEEEEecCCEEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~gg~~~~~ 776 (1140)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+.+ .+|++++|++ |+++..
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~ 186 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKS 186 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998777899999999986 4555 7999999985 899999
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|+.
T Consensus 187 ~~~ 189 (200)
T cd03217 187 GDK 189 (200)
T ss_pred ccH
Confidence 854
No 300
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.8e-35 Score=360.77 Aligned_cols=211 Identities=27% Similarity=0.375 Sum_probs=176.2
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. ++.+|+|+|++++|||.++|+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 46999999999962 12489999999999999999999999999999999998874 48999999988
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~ 689 (1140)
+.. ..+++.++||+|++.+++ .|++||+.++. ++.++++ +.++++.+++. +-.|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 654 456788999999998886 69999998752 1233333 34455555543 3356767654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.+.||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN 544 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999998874 4899999999985 5788999999985
Q ss_pred CCEEEEECCC
Q 001146 770 GGQEIYVGPL 779 (1140)
Q Consensus 770 gg~~~~~g~~ 779 (1140)
|+++..|+.
T Consensus 545 -G~i~~~g~~ 553 (588)
T PRK13657 545 -GRVVESGSF 553 (588)
T ss_pred -CEEEEeCCH
Confidence 899999985
No 301
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.1e-35 Score=316.75 Aligned_cols=209 Identities=23% Similarity=0.318 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++++. +++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 4789999998851 123589999999999999999999999999999999998763 489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~g~~~ 690 (1140)
.. ..+++.++|++|++.+++ .|++||+.+.. .... +.+.+.++.+++.+..+. ..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 235678999999988776 69999986421 1111 224556666666543321 111 13
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++ ..+|++++|++
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK- 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 689999999986 45 45999999985
Q ss_pred CEEEEECC
Q 001146 771 GQEIYVGP 778 (1140)
Q Consensus 771 g~~~~~g~ 778 (1140)
|+++..|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89998876
No 302
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=334.20 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=170.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee
Confidence 3667777766531 1124689999999999999999999999999999999998764 489999999642
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
++.+...+.+.+|++||+.+..... ..+.++.++.++++++.+++.+..+..+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1122344567789999998754332 1233344456778999999987776653 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |+++..|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998777999999999986 67788999999985 8999999874
Q ss_pred c
Q 001146 781 R 781 (1140)
Q Consensus 781 ~ 781 (1140)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 3
No 303
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-35 Score=321.16 Aligned_cols=209 Identities=25% Similarity=0.391 Sum_probs=163.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYDP------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhh
Confidence 367899988741 13489999999999999999999999999999999998763 4899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~ 691 (1140)
. ..+++.++|++|++.+++ .|++||+.+... ....+. +.+.++..++.+.. ++... ...
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~ 135 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERG 135 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCC
Confidence 2 234567999999988876 699999987531 111111 22233333332221 11111 124
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
+.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|+++ .+ ..+|++++|++ |
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g 211 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-G 211 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999876 999999999986 45 45999999985 7
Q ss_pred EEEEECCC
Q 001146 772 QEIYVGPL 779 (1140)
Q Consensus 772 ~~~~~g~~ 779 (1140)
+++..|+.
T Consensus 212 ~i~~~~~~ 219 (236)
T cd03253 212 RIVERGTH 219 (236)
T ss_pred EEEeeCCH
Confidence 99988875
No 304
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=359.29 Aligned_cols=220 Identities=19% Similarity=0.255 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|... .++.++|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEe
Confidence 48999999998521 1234699999999999999999999999999999999998764 379998888532
Q ss_pred C-------------cc---cc-cceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-
Q 001146 621 K-------------QE---TF-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP- 680 (1140)
Q Consensus 621 ~-------------~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 680 (1140)
. .. .. ++.+|||+|++ .+++.+||+||+.+...... .....+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 11 12 24689999997 67888999999998765421 2234444567889999999964
Q ss_pred --cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHH
Q 001146 681 --LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDI 757 (1140)
Q Consensus 681 --~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~ 757 (1140)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23443 4579999999999999999999999999999999999999999999999765 899999999986 57
Q ss_pred HHhhceEEEEecCCEEEEECCCC
Q 001146 758 FEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 758 ~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
.++|||+++|++ |+++..|++.
T Consensus 233 ~~~adri~vl~~-G~i~~~g~~~ 254 (623)
T PRK10261 233 AEIADRVLVMYQ-GEAVETGSVE 254 (623)
T ss_pred HHhCCEEEEeeC-CeecccCCHH
Confidence 889999999985 8999988864
No 305
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.7e-35 Score=303.67 Aligned_cols=169 Identities=28% Similarity=0.458 Sum_probs=147.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. +++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcc
Confidence 367899988742 123489999999999999999999999999999999998764 4899999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++ .|++||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 3 234667999999988777 4888876 99999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||++|||||+++|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+ +.+|++++|++ |+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 172 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CC
Confidence 99999999999999999999999999999999999999998777999999999985 44 68999999985 55
No 306
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.9e-35 Score=317.87 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 478999999884 23589999999999999999999999999999999998764 4899999862
Q ss_pred CcccccceEEEeccCCCCCCC--CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQETFARISGYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..+.. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 358999999877765 3788876532 1111 12367889999998777665 35799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|+ + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 6778999999995 4 688888
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
No 307
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.9e-35 Score=360.20 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=178.8
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+. .++++|+|+|+++++||.++|+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 328 ~~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~ 394 (571)
T TIGR02203 328 RGDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGH 394 (571)
T ss_pred CCeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCE
Confidence 346999999999952 123589999999999999999999999999999999998874 4799999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
+++. ..+++.++|++|++.+++ .|++||+.++. +++.+++ .++++++.+++.+ -.|+.+|.
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred eHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecC
Confidence 7643 456788999999998876 69999998752 1123333 2556666666543 35677776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ +.||||||||++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.||+|++|+
T Consensus 466 ~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~ 541 (571)
T TIGR02203 466 NG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMD 541 (571)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEe
Confidence 54 5699999999999999999999999999999999999999999999874 4799999999974 578899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 542 ~-g~i~~~g~~~ 552 (571)
T TIGR02203 542 D-GRIVERGTHN 552 (571)
T ss_pred C-CEEEeeCCHH
Confidence 5 8999988853
No 308
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.8e-35 Score=308.11 Aligned_cols=194 Identities=23% Similarity=0.305 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++++. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 67899998874 24589999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ..+++.++|++|+..+++.+||+||+.+..... .. +..++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----~~---~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-----PG---AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----cc---hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 235677999999988888999999998864211 11 134688999999977666543 46999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
||++|||+|+++|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ..+.+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 345566543
No 309
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-34 Score=352.26 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++++|++++|+.. .+.+++|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 38899999998521 01246899999999999999999999999999999999986531 2589999999
Q ss_pred cccCcc------cc-cceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 001146 618 YPKKQE------TF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSL 685 (1140)
Q Consensus 618 ~~~~~~------~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~ 685 (1140)
.++... .. ++.++|++|++. +.+.+|++|++.+...... .....+.+++++++++.++|.+. .+..
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876421 12 246999999874 5677899999876543211 12344455678899999999753 3444
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.+||+
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999986 577899999
Q ss_pred EEEecCCEEEEECCCC
Q 001146 765 FLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~~ 780 (1140)
++|++ |++++.|+++
T Consensus 228 ~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 228 AVMQN-GRCVEQNRAA 242 (529)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 8999998864
No 310
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.4e-35 Score=319.57 Aligned_cols=211 Identities=24% Similarity=0.350 Sum_probs=166.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|+++.|+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCc
Confidence 358999999998521 123589999999999999999999999999999999998763 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc--CCcccccccccCCCCCcC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--ELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~g~~~~~~L 694 (1140)
+.. ...++.++|++|++.+++ .|++||+.+...............+..+++.++.+ |+.+..+.. ++.|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcC
Confidence 532 234567999999988776 69999998753211000000011112346777777 666554443 4679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|++++|++ |+
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 99999999999999999999999999999999999999999999865 689999999986 45 45999999985 55
No 311
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-36 Score=306.86 Aligned_cols=191 Identities=24% Similarity=0.401 Sum_probs=167.4
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEeccCCCCCCCCCH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
++++..+.-.++||-|+||||||||+|+|+|...++ +|.|.+||....+ ...+|++|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 477777775799999999999999999999988754 8999999975422 1246789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
+.||.|+.+.. .....+++.+.+|+.|..++.. ..|||||||||+|+|||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986421 2234689999999999999874 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 725 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|-..+.+++..|+++.++ +..|+.++|.+. |+.+++|+|++|++ |++...|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 999999999999999866 789999999986 89999999999986 8999999964
No 312
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=8.2e-34 Score=366.22 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=107.7
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHh---hCCc
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 713 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~---~~p~ 713 (1140)
.+...||.|+|.+...-........++.++++ ++++.+||.+. .+.. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45567999999886542111111223333445 47888999765 4554 3579999999999999998 6999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|+++.|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 3589999998753
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=7e-35 Score=303.19 Aligned_cols=176 Identities=27% Similarity=0.461 Sum_probs=150.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|+.. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~-----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPEQ-----------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCCC-----------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHH
Confidence 4688999887421 12489999999999999999999999999999999998764 4799999998653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 622 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
. ...++.++|++|++.+++ .|++||+ ...||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234567999999987776 6888876 135999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||||+.+|++|+|||||+|||+.+++.+.+.|+++. +++|+|+++|++. ++ +.+|++++|++ |++++.|
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999985 5899999999986 44 57999999985 7888754
No 314
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-34 Score=355.58 Aligned_cols=214 Identities=22% Similarity=0.360 Sum_probs=176.6
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..++++|++|+|+. +++.+|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 311 ~~~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~ 377 (569)
T PRK10789 311 RGELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDI 377 (569)
T ss_pred CCcEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCE
Confidence 346999999999852 123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+++.++|++|++.+++ .|++||+.++. ++.++++ ++++++..++. +-.|+.+|.
T Consensus 378 ~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~ 447 (569)
T PRK10789 378 PLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQQE----IEHVARLASVHDDILRLPQGYDTEVGE 447 (569)
T ss_pred EHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC
Confidence 8643 356788999999999887 59999998742 1233332 34455554443 345677766
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++ ..+.+|++++|+
T Consensus 448 ~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ 523 (569)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe
Confidence 43 5699999999999999999999999999999999999999999999875 5899999999985 457799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+.+
T Consensus 524 ~-G~i~~~g~~~ 534 (569)
T PRK10789 524 H-GHIAQRGNHD 534 (569)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999853
No 315
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-34 Score=286.92 Aligned_cols=230 Identities=25% Similarity=0.293 Sum_probs=193.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|++.++. +++.||++||++|++||+.+||||||||||||.++|+|...+..++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478999998874 22479999999999999999999999999999999999988878899999999987
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCC
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LS 695 (1140)
.. +..|..+..-+|.|.-+|..|+.+.|..+...+.....-..+-...+++.++.+++.+ ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 54 3345677889999999999999999988765432211102233456788999999987 5555543 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh--ceEEEEecCCEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQE 773 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~v~~l~~gg~~ 773 (1140)
||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|++++++||.. .+.++. |+|-+|.+ |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999999999999985 577777 99999996 899
Q ss_pred EEECCCCcchhHHHHHHhhCC
Q 001146 774 IYVGPLGRHSCHLISYFEAIP 794 (1140)
Q Consensus 774 ~~~g~~~~~~~~~~~~f~~~~ 794 (1140)
+..|.+ ++.++.+..+
T Consensus 224 v~sG~~-----el~~~le~~g 239 (251)
T COG0396 224 VKSGDP-----ELAEELEEKG 239 (251)
T ss_pred EecCCH-----HHHHHHHHhc
Confidence 999986 4667776653
No 316
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.2e-34 Score=310.49 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=160.4
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCC--CCCHHHHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP--FVTIYESLLFSA 652 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~ 652 (1140)
|++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++ .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46899999999999999999999999998764 48999999987532 3567999999986643 479999998753
Q ss_pred HccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHH
Q 001146 653 WLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731 (1140)
Q Consensus 653 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 731 (1140)
..... ........++.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223345788999999987766653 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 732 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
+.+.|++++++|+|+|+++|+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999998877999999999986 578899999999 5 79999998753
No 317
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.8e-34 Score=306.67 Aligned_cols=200 Identities=24% Similarity=0.301 Sum_probs=161.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 71 (207)
T cd03369 5 GEIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGID 71 (207)
T ss_pred CeEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEE
Confidence 45899999998852 113589999999999999999999999999999999998764 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
+.. ...++.++|++|++.+++ .|++||+.+.. ....+ .+.+.++ + +. ..+.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~~~~LS~ 128 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----GGLNLSQ 128 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----CCCcCCH
Confidence 532 234567999999998776 59999996521 11211 1233333 2 22 2457999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. .+. .+|++++|++ |+++..
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~l~~-g~i~~~ 204 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILVMDA-GEVKEY 204 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEEC-CEEEec
Confidence 99999999999999999999999999999999999999999985 5899999999986 344 4899999985 789888
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|++
T Consensus 205 g~~ 207 (207)
T cd03369 205 DHP 207 (207)
T ss_pred CCC
Confidence 763
No 318
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.6e-34 Score=352.99 Aligned_cols=212 Identities=25% Similarity=0.307 Sum_probs=173.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEE
Confidence 46999999999852 12479999999999999999999999999999999998774 48999999987
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~g~~ 689 (1140)
... ..+++.++||+|++.+++ .|++||+.++. +..++++. .++++..++ .+..|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHHHH----HHHHHHhCcHHHHHhccccccchhcCC
Confidence 643 356788999999998886 79999998752 12233332 233333332 23345666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+ ..||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 469 ~-~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~ 544 (585)
T TIGR01192 469 G-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ 544 (585)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC
Confidence 3 5699999999999999999999999999999999999999999998874 5899999999985 3477999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 545 -G~i~~~g~~~ 554 (585)
T TIGR01192 545 -GRLIEKGSFQ 554 (585)
T ss_pred -CEEEEECCHH
Confidence 8999999853
No 319
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.4e-35 Score=320.46 Aligned_cols=213 Identities=22% Similarity=0.295 Sum_probs=166.3
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++++|++++|+. .++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~ 83 (257)
T cd03288 17 GGEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGI 83 (257)
T ss_pred CceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCE
Confidence 346999999999852 12358999999999999999999999999999999999876 45899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~ 688 (1140)
++.. ...++.++|++|++.+++ .|++||+.... ....+ .+.++++..++.+.. ++..+.
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhcccccCcEecc
Confidence 7643 235677999999998776 59999985321 11111 122333333332211 122221
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. ++.|+|+++|+++ .+. .+||+++|+
T Consensus 153 -~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~ 228 (257)
T cd03288 153 -GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLS 228 (257)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEE
Confidence 245799999999999999999999999999999999999999999999874 5899999999987 454 499999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 229 ~-G~i~~~g~~~ 239 (257)
T cd03288 229 R-GILVECDTPE 239 (257)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.5e-35 Score=355.82 Aligned_cols=201 Identities=29% Similarity=0.450 Sum_probs=168.2
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 47999999999962 123589999999999999999999999999999999998874 48999999998
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 689 (1140)
+.+ ..+++.++||+|++.+++ .|++||+.++. +..+++ .++++++..++.+ -.||.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 653 457788999999999886 69999998752 122332 2456666666543 346777764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|
T Consensus 456 g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 456 G-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 5699999999999999999999999999999999999999999999875 5899999999985 46789999875
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.3e-34 Score=301.57 Aligned_cols=176 Identities=28% Similarity=0.444 Sum_probs=146.5
Q ss_pred EEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc
Q 001146 543 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 622 (1140)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 622 (1140)
+++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 1 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~ 65 (180)
T cd03214 1 EVENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLAS 65 (180)
T ss_pred CeeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCc
Confidence 3678888874 13589999999999999999999999999999999998764 48999999987642
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 623 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 623 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
..+++.++|++| +++.+++.+..+.. ++.||||||
T Consensus 66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~ 103 (180)
T cd03214 66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGER 103 (180)
T ss_pred CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHH
Confidence 123344666666 45556666544443 356999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999998766 899999999986 57789999999985 7887654
No 322
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-35 Score=279.31 Aligned_cols=194 Identities=22% Similarity=0.354 Sum_probs=166.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 641 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 641 (1140)
++.++|+++|+.+++||..+|.||||||||||+|+++.+.++ .+|.+++.|++++. +.+|+.++||.|.+.+++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg- 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG- 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCccccc-
Confidence 456799999999999999999999999999999999998774 58999999998754 568899999999999998
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 721 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPt 721 (1140)
-||++|+.|...+|.... + ++...+.++.+++.+..-+. .+..||||||||++|+|-|..-|+||+|||||
T Consensus 91 ~tVeDNlifP~~~r~rr~-d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRP-D----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred cchhhccccchHHhccCC-C----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 699999999887764322 1 23356788888887643222 24679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 722 SGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|+||+.+++.+-+.|.++. ++.+.++.+||++. +..+.+||++-+.. |+
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~ 211 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GH 211 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Cc
Confidence 9999999999999998886 67899999999987 56788999999986 44
No 323
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=328.67 Aligned_cols=199 Identities=25% Similarity=0.333 Sum_probs=158.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+.-++++|+++.|+ +++.+++++||.+++|+.+||+||||+|||||||+|+|...+ .+|.|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc
Confidence 34689999999885 225799999999999999999999999999999999997664 3788876421
Q ss_pred ccCcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCCH
Q 001146 619 PKKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLST 696 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~LSg 696 (1140)
-.+||..|+. .+.+..|+.|++.-.. +... +..+...+..+++.... .+. ++.|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~-----v~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKP-----VGVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCc-----hhhcCH
Confidence 2479999986 3347779999886431 1111 34467889999887432 233 457999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||.|+.+|+.++.+|.+|+|||||+.||..+...+.++|.+. .-|||+|+||.. .+-..+++++.+.+ +-..|.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999999999999999999765 459999999975 57788999999985 333444
Q ss_pred CC
Q 001146 777 GP 778 (1140)
Q Consensus 777 g~ 778 (1140)
|.
T Consensus 518 g~ 519 (530)
T COG0488 518 GG 519 (530)
T ss_pred CC
Confidence 55
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4e-34 Score=293.22 Aligned_cols=165 Identities=26% Similarity=0.380 Sum_probs=143.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 i~~~~~~~~~~~------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATPD------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcCC------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---
Confidence 368899988741 23589999999999999999999999999999999998763 4899999873
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
+.++|++|++.++ ..|++||+.+. . .+.||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHH
Confidence 5689999998764 57999998642 0 24699999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. ..+.+|++++|+++|.
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999875 689999999975 4578999999998774
No 325
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.2e-34 Score=318.74 Aligned_cols=251 Identities=22% Similarity=0.312 Sum_probs=202.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+++++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|.+.| .+|+|.++|++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEEECCEEe
Confidence 478889888774 45689999999999999999999999999999999999884 489999999986
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 621 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 621 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
.- ...+..||+|.|+..+.|++||.||+..+..-......+....+++++++.+..||.-..|.++ ..||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCc
Confidence 43 3356689999999999999999999998764332223455566677899999999987777765 46999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
||||||.|-++|.++|++|+|||||+-|-|....++.+.|++++++|+|||++||.+. |+.+.+||+.+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999997 89999999999985 788766
Q ss_pred CC-CCc-chhHHHHHHhh-CCCCcCCCCCCCcccceeecc
Q 001146 777 GP-LGR-HSCHLISYFEA-IPGVQKIKDGYNPATWMLEVS 813 (1140)
Q Consensus 777 g~-~~~-~~~~~~~~f~~-~~~~~~~~~~~npad~~l~~~ 813 (1140)
-+ ..+ ...++.+..-. --..+.......|.+.++++-
T Consensus 222 ~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~ 261 (501)
T COG3845 222 VDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVE 261 (501)
T ss_pred ecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEe
Confidence 65 322 12333332211 001111123356677777664
No 326
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-34 Score=346.10 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=172.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccc
Confidence 78999999884 23489999999999999999999999999999999998763 4799999987653
Q ss_pred c---ccccceEEEeccCCCC--C------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 622 Q---ETFARISGYCEQNDIH--S------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
. ...++.++|++|++.. + ..+|++|++.+. . +.+++++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----------V-KDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----------h-hHHHHHHHHHHHcCCHhhhhCCc----
Confidence 2 2234568999998642 1 146888877531 1 12345788999999988777654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~- 210 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD- 210 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999877999999999986 67889999999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 211 G~i~~~~~~~ 220 (490)
T PRK10938 211 CTLAETGERE 220 (490)
T ss_pred CEEEEeCCHH
Confidence 8999999864
No 327
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=2.6e-33 Score=349.30 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC---cEeEE
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p---~illl 717 (1140)
+||.|++.|...+. . .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998865432 1 1123578889999752 3443 3569999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 9999999999999999999999888999999999985 346899999994 479999999863
No 328
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.4e-34 Score=354.16 Aligned_cols=214 Identities=24% Similarity=0.385 Sum_probs=176.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+.. .++.+|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999999621 124589999999999999999999999999999999998774 48999999988
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 689 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 689 (1140)
+++ ..+++.++|++|++.+++ .|++||+.++. ++.+++ .++++++..++.+ -.|+.+|..
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR-----PDATDE----EVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred HHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 653 456778999999998876 79999998742 122332 2455666665542 245666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
...||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++.|++
T Consensus 474 -g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~ 549 (576)
T TIGR02204 474 -GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ 549 (576)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999999875 5899999999974 5678999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+.+
T Consensus 550 -g~~~~~g~~~ 559 (576)
T TIGR02204 550 -GRIVAQGTHA 559 (576)
T ss_pred -CEEEeeecHH
Confidence 8999999853
No 329
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.9e-34 Score=290.14 Aligned_cols=158 Identities=27% Similarity=0.416 Sum_probs=138.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECC
Confidence 46889999884 23589999999999999999999999999999999998764 4899999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 622 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 622 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. ..++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 31 12345667666 9999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|.|+|+++|++. ++.+.+|++++|++ |++++
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 999999999999999999999999999999999999999999777999999999975 57788999999985 78764
No 330
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-34 Score=293.74 Aligned_cols=217 Identities=22% Similarity=0.354 Sum_probs=181.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
..-++++||++.+. +++||+|+|++|+|||-.+|+|||||||||||++++|..++. +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r~-------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRRN-------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEEC-------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeee
Confidence 34589999999874 577999999999999999999999999999999999987753 899999998
Q ss_pred ccCc----ccccceEEEeccC--CCCCCCCCHHHHHHHH--HHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 619 PKKQ----ETFARISGYCEQN--DIHSPFVTIYESLLFS--AWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 619 ~~~~----~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
+... .+.|+.||+|.-+ ..+.+..+|+|-+.-+ +...... ..+ ++..+++..+++.+|+.+.+|...
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~-~~~~~~a~~lle~~g~~~la~r~~--- 169 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT-AEDLAAAQWLLELLGAKHLADRPF--- 169 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCC-HHHHHHHHHHHHHcchhhhccCch---
Confidence 7643 4568899999643 3344567888876532 2222222 333 445667899999999999998875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhceEEEE
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..||-|||||+-|||||+.+|++|+||||++|||...+..+.+.|.+++.. +.++|++||++. |+-..+++++++
T Consensus 170 --~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 170 --GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred --hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 469999999999999999999999999999999999999999999999865 789999999987 788999999999
Q ss_pred ecCCEEEEECC
Q 001146 768 KRGGQEIYVGP 778 (1140)
Q Consensus 768 ~~gg~~~~~g~ 778 (1140)
++ |+++++|.
T Consensus 247 ~~-g~v~~~g~ 256 (257)
T COG1119 247 KE-GEVVAQGK 256 (257)
T ss_pred eC-Cceeeccc
Confidence 85 89999874
No 331
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-33 Score=345.32 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=168.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 321 ~~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 47999999999962 13489999999999999999999999999999999998774 48999999998
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
... ..+++.++||+|++.+++ .|++|| . ... .++.++++++.+++.+..+...|......|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 753 356788999999988776 577776 0 111 12346778888888754332111111246999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.+|++++|++ |+++.
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e 529 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 529 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999876543 5899999999974 5778999999986 77776
Q ss_pred ECC
Q 001146 776 VGP 778 (1140)
Q Consensus 776 ~g~ 778 (1140)
...
T Consensus 530 ~~~ 532 (547)
T PRK10522 530 LTG 532 (547)
T ss_pred ecC
Confidence 533
No 332
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-33 Score=297.57 Aligned_cols=191 Identities=19% Similarity=0.289 Sum_probs=157.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ ++.+++ +|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccC
Confidence 67899999884 123555 9999999999999999999999999999998764 4899999998765
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
... ++.++|++|++.+++.+||+||+.+..... . .++.++++++.+++.+..+.. .+.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 345899999988888899999998764322 1 123467888999988766654 35799999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
++|||||+++|++++|||||+|||+.++..+.+.|++..++|+|+|+++|+++ ..+.+|-+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877677999999999986 23445544
No 333
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1e-33 Score=321.22 Aligned_cols=184 Identities=28% Similarity=0.396 Sum_probs=158.6
Q ss_pred EeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 001146 585 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 663 (1140)
Q Consensus 585 l~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 663 (1140)
|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.|....+ ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 6899999999999999998764 48999999987643 223567999999999999999999999976433 12334
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-
Q 001146 664 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 742 (1140)
Q Consensus 664 ~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~- 742 (1140)
+.+++++++++.+++.+..++.. +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44566889999999988777653 579999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 743 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 743 g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|+|+|++||++. ++.+++|++++|++ |+++..|+++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 899999999986 68889999999985 8999999874
No 334
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-33 Score=292.16 Aligned_cols=166 Identities=31% Similarity=0.502 Sum_probs=143.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.++. .+..+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhh
Confidence 357888888742 112589999999999999999999999999999999998764 4799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++ .|+.||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~ 101 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQ 101 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHH
Confidence 2 234567999999987765 5888776 99999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.. +|++++|++
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~ 169 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDD 169 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999854 799999999986 4555 999999986
No 335
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-33 Score=300.85 Aligned_cols=194 Identities=22% Similarity=0.387 Sum_probs=149.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC----
Confidence 46889998874110 0013589999999999999999999999999999999998763 489999998
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCCcC
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~~L 694 (1140)
.++|++|++.+++ .|++||+.+... ...+. ..+.++.+++.+.. ++.... ....|
T Consensus 67 ------~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l 128 (204)
T cd03250 67 ------SIAYVSQEPWIQN-GTIRENILFGKP------FDEER----YEKVIKACALEPDLEILPDGDLTEIGE-KGINL 128 (204)
T ss_pred ------EEEEEecCchhcc-CcHHHHhccCCC------cCHHH----HHHHHHHcCcHHHHHhccCcccceecC-CCCcC
Confidence 4899999998874 799999987421 11111 22333333332211 112222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||||||++|||+|+.+|++++|||||+|||+.+++.+.+ .++++.++|+|||+++|+++ .+.. +|++++|++
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~ 202 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDN 202 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeC
Confidence 9999999999999999999999999999999999999988 46666666899999999986 4555 999999986
No 336
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2e-33 Score=302.61 Aligned_cols=198 Identities=24% Similarity=0.321 Sum_probs=153.9
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 622 (1140)
+.|+.+.++ +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 3 ~~~~~~~~~------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~ 68 (218)
T cd03290 3 VTNGYFSWG------------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEP 68 (218)
T ss_pred eeeeEEecC------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccc
Confidence 456777764 124589999999999999999999999999999999998763 48999999986532
Q ss_pred ------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCC
Q 001146 623 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGLP 689 (1140)
Q Consensus 623 ------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~ 689 (1140)
...++.++|++|++.++ ..|++||+.+... ...+ ..+++++.+++.+..+ +..+.
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 136 (218)
T cd03290 69 SFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE- 136 (218)
T ss_pred cccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCccc-
Confidence 12346799999998877 5799999987421 1111 1234555555543221 11111
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH--HHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+ .++.+.++|.|+|+++|+++ .+ ..+|++++|
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 214 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAM 214 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEe
Confidence 246799999999999999999999999999999999999999998 66666666899999999986 34 579999999
Q ss_pred ec
Q 001146 768 KR 769 (1140)
Q Consensus 768 ~~ 769 (1140)
++
T Consensus 215 ~~ 216 (218)
T cd03290 215 KD 216 (218)
T ss_pred cC
Confidence 85
No 337
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-34 Score=312.47 Aligned_cols=216 Identities=27% Similarity=0.418 Sum_probs=181.4
Q ss_pred CCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEc
Q 001146 537 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 616 (1140)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 616 (1140)
..++.+.|+||+|.|+ +++++|+|+||++++|+.+|++||||+||||++++|-...+ ..+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEc
Confidence 4467799999999996 34678999999999999999999999999999999987665 568999999
Q ss_pred CcccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccC
Q 001146 617 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 617 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
|+++.. ...|+.+|.||||-.++. -|...|+.|+. +..+.++..+ .+.+.++ .+.+..|+.||.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 998753 567889999999888875 68888888762 3344444332 2333333 356678999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.|.+ |||||||||+|||+++++|+||+|||+||+||..++++++..|++.. .|+|.+++.|+++. + --+|.+++|+
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~ 471 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLD 471 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEee
Confidence 8775 99999999999999999999999999999999999999999999986 59999999999874 3 4579999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|..
T Consensus 472 ~-g~i~erg~h 481 (497)
T COG5265 472 N-GRIVERGTH 481 (497)
T ss_pred C-CEEEecCcH
Confidence 6 899999985
No 338
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.3e-34 Score=278.23 Aligned_cols=216 Identities=25% Similarity=0.340 Sum_probs=183.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC-cc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YP 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 619 (1140)
.++.+||+.+.+ +..+|+|+||++.|||+-+|+|||||||||++++|+|...+ ..|++.++| .+
T Consensus 5 iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCchh
Confidence 477888887763 46689999999999999999999999999999999998764 489999999 55
Q ss_pred cCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC------CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 620 KKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 620 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
+.. +-.+..||-=+|.|..|+.+||+|||..+.....+ .... .+.+++++++++..||.+.++...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhh--
Confidence 533 12345678889999999999999999987543211 1122 2334578999999999999988754
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.||.||||++.|++-++.+|++|+||||++|+-.+...+.-++|++++. +++|+++.||+. .+.+++|+|.+|++
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~ 221 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE 221 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec
Confidence 4999999999999999999999999999999999999999999999875 789999999987 68899999999996
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|.+...|+.+
T Consensus 222 -G~VL~EGsld 231 (249)
T COG4674 222 -GSVLAEGSLD 231 (249)
T ss_pred -cceeecccHH
Confidence 7999999864
No 339
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-32 Score=338.33 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhh---CCcEeE
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 716 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~---~p~ill 716 (1140)
.+||.|.+.|...+. .. ....++++.+||... .+.. .+.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 357777777765432 11 123567888898652 3433 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999985 346799999993 479999999863
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.3e-33 Score=301.60 Aligned_cols=200 Identities=20% Similarity=0.225 Sum_probs=158.8
Q ss_pred eeeCceEEEe-----CceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 569 LLNGVSGAFR-----PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 569 iL~~vs~~i~-----~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
.++|++++++ +||+++|+||||||||||+++|+|..++ .+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCC
Confidence 4667777765 7999999999999999999999998764 4799999884 4799999987777899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
|+|++.+...... .. ....+++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----TH---PYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----cc---HHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 11 123567889999987766653 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEE--EECCCCcchhHHHHHHhhC
Q 001146 724 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGPLGRHSCHLISYFEAI 793 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~--~~g~~~~~~~~~~~~f~~~ 793 (1140)
||+.++..+.+.|+++++ .|+|||+++|++. .+..++|++++|++ +..+ ..+++....+.+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 999999999999999875 4899999999986 57778999999963 3222 3344433333566676655
No 341
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=340.06 Aligned_cols=219 Identities=23% Similarity=0.338 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|++.+||+++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 48899999998521 1234689999999999999999999999999999999998764 489999999886
Q ss_pred Ccc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQE---T----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
... . .++.++|++|++.+++.+|+.||+.+..... ....++.++.+.++++.+++.+..|... +.
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 431 1 2467999999999999999999998865432 1233445566789999999987766653 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||++|||+|+++|++|+|||||+|||+.+++.+.+.|+++.++|+|+|+++|+++ ..+.|||+++|++ |++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998777999999999975 4467999999985 899
Q ss_pred EEECCCCc
Q 001146 774 IYVGPLGR 781 (1140)
Q Consensus 774 ~~~g~~~~ 781 (1140)
+..|+.++
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999853
No 342
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=290.70 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=168.2
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEec-cCCCCCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPFVT 643 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 643 (1140)
..+++|+||+|++|++++++|||||||||+||+|+|... +.+|.|.++|...-. +.+-+.+++|+ |...+.-.+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 358999999999999999999999999999999999877 458999999986532 23334556553 3334444455
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
+.|.+.....++ +++.++-+++.+.+.+.+++++..+..+ +.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 667766544443 4455666677899999999998777764 67999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 724 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
||..++..+.+.|++..+ ++.||+.+||+.+ ++..+||||++++. |+++|+|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 999999999999999864 5899999999998 89999999999986 8999999973
No 343
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-32 Score=304.27 Aligned_cols=202 Identities=20% Similarity=0.344 Sum_probs=158.1
Q ss_pred CCCCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE
Q 001146 536 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 615 (1140)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 615 (1140)
+.....++++|+++. . +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+
T Consensus 34 ~~~~~~l~i~nls~~-~--------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i 96 (282)
T cd03291 34 SSDDNNLFFSNLCLV-G--------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKH 96 (282)
T ss_pred CCCCCeEEEEEEEEe-c--------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE
Confidence 344567999999974 1 2379999999999999999999999999999999998764 4899999
Q ss_pred cCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 001146 616 SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 688 (1140)
Q Consensus 616 ~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~ 688 (1140)
+| .++|++|++.+++ .||+||+.+.... ... .+.+.++.+++.+.. ++.++.
T Consensus 97 ~g----------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 97 SG----------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CC----------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC
Confidence 87 3899999988877 4999999874211 111 122333334443221 222221
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||+++|++. .+ ..+|++++|
T Consensus 156 -~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l 231 (282)
T cd03291 156 -GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL 231 (282)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEE
Confidence 23579999999999999999999999999999999999999998865 5554 5799999999986 34 679999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |++++.|++.
T Consensus 232 ~~-G~i~~~g~~~ 243 (282)
T cd03291 232 HE-GSSYFYGTFS 243 (282)
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999863
No 344
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.4e-33 Score=338.45 Aligned_cols=211 Identities=18% Similarity=0.220 Sum_probs=168.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+..+ ..++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 335 ~~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~~~g~ 404 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEILLDGA 404 (555)
T ss_pred CceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCE
Confidence 35799999999996210 0123589999999999999999999999999999999998774 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-ccCCCCCcC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-VGLPGVSGL 694 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~~~~~L 694 (1140)
++.. ..+++.++||+|++.+++ .|++||.. +.. .++.++++++.+++.+..+.. .|......|
T Consensus 405 ~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~--------~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L 471 (555)
T TIGR01194 405 AVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG--------EHA----SLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471 (555)
T ss_pred ECCCCCHHHHHhhCcEEccChhhhh-hhhhcccc--------cch----hHHHHHHHHHHcCCchhhcccccccCCcccC
Confidence 8754 346788999999988776 57777731 111 223467888888887654432 222223569
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH-HHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||++|||||+++|++|+||||||+||+.+++.+.+.+. .+..+|+|+|+++|+++ ..+.+|++++|++ |++
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i 548 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCI 548 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999998764 45556899999999975 5678999999985 787
Q ss_pred EE
Q 001146 774 IY 775 (1140)
Q Consensus 774 ~~ 775 (1140)
+.
T Consensus 549 ~~ 550 (555)
T TIGR01194 549 VK 550 (555)
T ss_pred EE
Confidence 64
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.8e-32 Score=292.80 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=153.9
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-EcCcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 79999999999999999999999999999999998764 479986 666432 12345667889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+.+...... .+.++. .+.+.+..++.+..++.+ +.||||||||++|||||+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765431 222221 233445567776666654 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHhh
Q 001146 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEA 792 (1140)
Q Consensus 728 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~~ 792 (1140)
++..+.+.+.+..+ ++|+|+++|+++ .+.+.+|++++|++ |++++.|+.+ .+.+++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~----~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA----QATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH----HHHHHHHH
Confidence 99999998865443 478999999986 57788999999985 8999999874 34455443
No 346
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=288.78 Aligned_cols=190 Identities=26% Similarity=0.338 Sum_probs=159.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++.+|++..++...... ......+++||||+|++||+++|+|+||||||||-++|.|+.. +++|+|.++|.++
T Consensus 4 ll~v~~l~k~f~~~~~~~----~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i 77 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFG----KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDI 77 (268)
T ss_pred eEEEeccEEEEecccccC----cccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcch
Confidence 378899998887542200 0113579999999999999999999999999999999999887 4589999999875
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqr 699 (1140)
.... .+++.+++.++++.+|+.. ..++ ..++||||||
T Consensus 78 ~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQr 115 (268)
T COG4608 78 TKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQR 115 (268)
T ss_pred hhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhh
Confidence 4321 3345567899999999765 2333 2478999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||++|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ .+..++||+.+|.. |+++..|+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~ 193 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGP 193 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecC
Confidence 9999999999999999999999999999999999999999765 999999999987 57889999999996 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
.+
T Consensus 194 ~~ 195 (268)
T COG4608 194 TE 195 (268)
T ss_pred HH
Confidence 64
No 347
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=6.5e-31 Score=333.49 Aligned_cols=224 Identities=28% Similarity=0.386 Sum_probs=195.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..+..+|++..|... ++ +++++|+.|++||+.+++|||||||||++|+|+|..+ +.+|++.++|.+
T Consensus 563 ~~~~~~~L~k~y~~~-----------~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~ 628 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-----------DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHD 628 (885)
T ss_pred ceEEEcceeeeecch-----------hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCc
Confidence 356778888777521 11 7999999999999999999999999999999999877 458999999998
Q ss_pred cCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 620 KKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 620 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
+.. .+.++.+||+||+|.+++.+|.||++.+.++++. ....+-++.++..++.++|.+.+|+.++ .+|
T Consensus 629 i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~yS 700 (885)
T KOG0059|consen 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYS 700 (885)
T ss_pred cccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCC
Confidence 753 2367889999999999999999999999999884 3334445568999999999999998864 599
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
||+|||+++|.||+.+|++++|||||+|+||.+++.+++.++++.++|+.+|.|||..+ |...+|||+.+|.+ |++..
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~c 778 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRC 778 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEE
Confidence 99999999999999999999999999999999999999999999888889999999986 78889999999996 79999
Q ss_pred ECCCCcchhHHHHHHh
Q 001146 776 VGPLGRHSCHLISYFE 791 (1140)
Q Consensus 776 ~g~~~~~~~~~~~~f~ 791 (1140)
.|++ +++...|.
T Consensus 779 iGs~----q~LKsrfG 790 (885)
T KOG0059|consen 779 IGSP----QELKSRYG 790 (885)
T ss_pred ecCh----HHHHhhcC
Confidence 9997 56666654
No 348
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=329.99 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=167.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---
Confidence 67899999884 23589999999999999999999999999999999998764 4799999873
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHH-c-----------cCCC-CCC----------------HHHHHHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAW-L-----------RLSP-EVD----------------SETRKMFIDEV 672 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~-----------~~~~-~~~----------------~~~~~~~~~~~ 672 (1140)
+.++|++|++.+++.+||+|++.++.. . ..+. ... ..+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 348999999988899999999986421 0 0000 000 01123467889
Q ss_pred HHHcCCcccc-cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec
Q 001146 673 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 751 (1140)
Q Consensus 673 l~~~~l~~~~-~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H 751 (1140)
++.+|+.+.. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 232 357999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHhhceEEEEecCCEE-EEECCCC
Q 001146 752 QPSIDIFEAFDELFLMKRGGQE-IYVGPLG 780 (1140)
Q Consensus 752 ~~~~~~~~~~d~v~~l~~gg~~-~~~g~~~ 780 (1140)
+++ .+.+.||++++|++ |++ ++.|+.+
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCHH
Confidence 986 57889999999985 788 5888763
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=256.71 Aligned_cols=191 Identities=25% Similarity=0.319 Sum_probs=162.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-eEEEEEEEcCccc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPK 620 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~ 620 (1140)
++.+||+... ++.-.|.++|++|.+||++-||||||||||||+..+.|...+. ..+|++.+|++++
T Consensus 3 l~l~nvsl~l-------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 3 LCLKNVSLRL-------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred eeeeeeeecC-------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 5678887543 2356899999999999999999999999999999999966543 4689999999987
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
+. ..-+|++|+.+||+.+||.++|.+|+.|+. +.....+.|++.++..++..||....+.- ...||||||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQr 140 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQR 140 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchH
Confidence 64 234688999999999999999999999864 44455567788889999999999887764 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HhhCCCEEEEEecCCC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~-~~~~g~tvi~~~H~~~ 754 (1140)
-||++-|+|+..|+.++||||+|.||..-+.++.+..-. ....|..+|.+|||..
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999999999999999999999998887654 3456999999999865
No 350
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-32 Score=330.10 Aligned_cols=206 Identities=24% Similarity=0.344 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. +++++|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--
Confidence 589999999884 124589999999999999999999999999999999998764 4799998752
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHH-cc------------CCCCCCH--------------------HHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAW-LR------------LSPEVDS--------------------ETRKM 667 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~~--------------------~~~~~ 667 (1140)
..++||+|++.+++.+||.||+.++.. .+ ....... .+.+.
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999999999999999987531 00 0000000 01134
Q ss_pred HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 001146 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747 (1140)
Q Consensus 668 ~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 747 (1140)
+++++++.+|+.. .+.. +..|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778889999853 4544 3579999999999999999999999999999999999999999999876 25999
Q ss_pred EEecCCCHHHHHhhceEEEEecCCEEE-EECCC
Q 001146 748 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 748 ~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
++||+++ .+.+.+|++++|++ |+++ |.|+.
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 245 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 245 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCH
Confidence 9999986 57788999999996 7876 77875
No 351
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=3.5e-32 Score=297.32 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=156.3
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-----------EcCcccCcc--c-cc--ceEEE
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE--T-FA--RISGY 631 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 631 (1140)
.+|+|+| .+++||+++|+|||||||||||++|+|..++ .+|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 4799999 5999999999999999999999999998774 489995 778765321 1 11 23689
Q ss_pred eccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC
Q 001146 632 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711 (1140)
Q Consensus 632 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~ 711 (1140)
++|....++ .++.+++.+.. + ....++.++++++.+++.+..+.. .+.||||||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 999877777 48888887642 1 112234578899999998766654 357999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 712 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 712 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|+ |++.++|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999986 5667899999996 457665543
No 352
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.98 E-value=1.5e-31 Score=287.84 Aligned_cols=225 Identities=22% Similarity=0.290 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcC
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 617 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 617 (1140)
-++.+|++..+... .+...+++||||++++||.+||+|.||||||-..+.+.|+.++. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 37888988877532 24577999999999999999999999999999999999865432 3478999999
Q ss_pred cccCc---cccc----ceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 618 YPKKQ---ETFA----RISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 618 ~~~~~---~~~~----~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
.+.-. ...+ ..|++++|+| .+.|..|+.+.+.-..++. .+.+.++.++++-++++.+|+.+....+...
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 87532 2222 4689999998 4667778877665544433 3456666677889999999998877666544
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
.++|||||||||.||.||+.+|++|+.||||++||..-+.+|+++|+++.++ |..++++|||++ -+.+++|||++|
T Consensus 155 --PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 155 --PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred --CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 4689999999999999999999999999999999999999999999999754 999999999997 477889999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
.+ |+++..|+.+
T Consensus 232 ~~-G~ivE~~~t~ 243 (534)
T COG4172 232 QH-GEIVETGTTE 243 (534)
T ss_pred ec-cEEeecCcHH
Confidence 96 8999999864
No 353
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=1.5e-31 Score=326.77 Aligned_cols=207 Identities=25% Similarity=0.362 Sum_probs=164.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~--- 66 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP--- 66 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC---
Confidence 478999999884 123589999999999999999999999999999999998764 479999875
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHc-cC-----------CCCCCHH---------------------HHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL-----------SPEVDSE---------------------TRKM 667 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~ 667 (1140)
+..++|++|++.+++.+||+||+.++... +. ......+ +.+.
T Consensus 67 -----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 67 -----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred -----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 24589999999999999999999875321 00 0000010 0113
Q ss_pred HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 001146 668 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 747 (1140)
Q Consensus 668 ~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 747 (1140)
+++++++.+++.. .+.. ++.|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3443 3579999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHhhceEEEEecCCEEE-EECCCC
Q 001146 748 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPLG 780 (1140)
Q Consensus 748 ~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~~ 780 (1140)
+++|++. .+...+|++++|++ |+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 9999986 57788999999986 7865 778753
No 354
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.2e-32 Score=269.37 Aligned_cols=220 Identities=26% Similarity=0.352 Sum_probs=173.0
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCccc---ccceEEEeccCC--CCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARISGYCEQND--IHS 639 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~--~~~ 639 (1140)
..+++|+++|++|..|+++.|+|.||||||||+|+|+|... +.+|+|.++|.+++... ....++-|+|+| -.+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 45679999999999999999999999999999999999877 45899999999986532 234567789987 458
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHH--cCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDS---ETRKMFIDEVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~--~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
|.+|+.||+..+........... +.+++...+-++. +|+++..++.+|. |||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcE
Confidence 99999999998754322222222 2333333444444 4667777777653 999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcc----hhHHHHH
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH----SCHLISY 789 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~----~~~~~~~ 789 (1140)
|+|||-|++|||.++..|++.-.++.+ .+.|.+++||.+. +..++-+|.++|++ |+++.+=.-++. ..++.+.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~-G~IvlDv~g~~k~~L~v~dli~~ 247 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHS-GKIVLDVTGEEKASLTVLDLIQM 247 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeC-CeEEEEcccccccCCcHHHHHHH
Confidence 999999999999999999999988865 4789999999987 68899999999985 899976433221 2345556
Q ss_pred HhhC
Q 001146 790 FEAI 793 (1140)
Q Consensus 790 f~~~ 793 (1140)
|+.+
T Consensus 248 F~~~ 251 (263)
T COG1101 248 FEKI 251 (263)
T ss_pred HHHH
Confidence 6644
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.6e-31 Score=272.33 Aligned_cols=156 Identities=23% Similarity=0.323 Sum_probs=131.0
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.+++++ +++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEE---------EEEEcccCC--------
Confidence 35678885 89999999999999999999999999998764 48999999852 678877421
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 725 (1140)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEE--CCCCcchhHHHHHHh
Q 001146 726 ARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV--GPLGRHSCHLISYFE 791 (1140)
Q Consensus 726 ~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~--g~~~~~~~~~~~~f~ 791 (1140)
+.++..+.+.++++++++ .|+|+++|++. .+.+.+|++++|+++ -.++. |++....+.+-.|+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGE-PGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCC-CccceeccCCcchhHHHHHHHH
Confidence 999999999999987665 99999999986 567789999999864 44544 776543344455554
No 356
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=2.3e-31 Score=329.36 Aligned_cols=200 Identities=19% Similarity=0.270 Sum_probs=160.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++||++.++ +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++
T Consensus 450 ~~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~-- 513 (659)
T TIGR00954 450 NGIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA-- 513 (659)
T ss_pred CeEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC--
Confidence 4699999999874 123589999999999999999999999999999999998653 368888753
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCcccccccccC----CCCCc
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGL----PGVSG 693 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~----~~~~~ 693 (1140)
++.++||+|++.+++. |++||+.+...... ..... ++.++++++.+++.+..+...|. .....
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~ 582 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDV 582 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccC
Confidence 4568999999988876 99999987532110 01111 23467888989988765443221 11357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||||||++|||||+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.+|
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999998875 3899999999986 468899999997544
No 357
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=299.03 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=155.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..+.++||+|.|+.. ..++++++|-+.+++.+|+|||||||||||||++.|...+ ..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~~------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCCc------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc
Confidence 3468899999998621 2479999999999999999999999999999999998763 4677654322
Q ss_pred ccCcccccceEEEeccC--CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 619 PKKQETFARISGYCEQN--DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
. .+++..|. +.+.-..++-|++.=.. .++.+.+.+..++..+||....+.. ..+.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 12233332 22222356666654221 1123445578899999998544433 2568999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
|||+||..|+.++..|.+|+|||||+|||..+...+-++|.+. .-+||.++||.. -+-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999888764 458999999987 478889999999988888888
Q ss_pred CCC
Q 001146 777 GPL 779 (1140)
Q Consensus 777 g~~ 779 (1140)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 874
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.1e-31 Score=270.62 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=127.3
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
.+.+|+|+||++++||+++|+|||||||||||++|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4568999999999999999999999999999999953 2688888876321 11334677766
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhC--CcEeEEeCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 722 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~--p~illlDEPts 722 (1140)
.++++.+++.+. .+.. .+.||||||||++|||+|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 134566777542 3443 357999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 723 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||+.++..+.+.|+++.+.|+|||+++|+++ . .+.+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~-~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-V-LSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhCCEEEEECC
Confidence 99999999999999998777999999999986 3 478999999975
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=4.3e-31 Score=263.70 Aligned_cols=142 Identities=27% Similarity=0.410 Sum_probs=127.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|+++.|.. ..+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 l~~~~l~~~~~~-------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTYGG-------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEECC-------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe---
Confidence 367888887741 2589999999999999999999999999999999998764 4899999984
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
+.++|++| ||+||+||
T Consensus 63 -----~~i~~~~~-----------------------------------------------------------lS~G~~~r 78 (144)
T cd03221 63 -----VKIGYFEQ-----------------------------------------------------------LSGGEKMR 78 (144)
T ss_pred -----EEEEEEcc-----------------------------------------------------------CCHHHHHH
Confidence 35788888 99999999
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|+++ ++.+.+|++++|++
T Consensus 79 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~ 142 (144)
T cd03221 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED 142 (144)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999876 479999999986 57788999999986
No 360
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=2.9e-31 Score=354.22 Aligned_cols=204 Identities=23% Similarity=0.346 Sum_probs=166.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++|+|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|..++ .+|++.
T Consensus 613 ~~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~----- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV----- 675 (1495)
T ss_pred CcEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE-----
Confidence 469999999999631 124589999999999999999999999999999999998763 355442
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCC
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~~~ 692 (1140)
..++.++||+|++.+++ .|++||+.|+. ..+++ +.+++++..++. +-.+|.+|..|.
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~------~~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~- 739 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGS------DFESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERGV- 739 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCC------ccCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCCc-
Confidence 24667999999999886 79999999863 12322 245555555543 445688887664
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++||||+.++|+|++||||||+||+.+++.+.+. ++.. .+|+|+|++||+++ ....+|+|++|++ |
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G 815 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSE-G 815 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeC-C
Confidence 5999999999999999999999999999999999999988765 4443 35899999999985 5778999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+.+
T Consensus 816 ~i~~~Gt~~ 824 (1495)
T PLN03232 816 MIKEEGTFA 824 (1495)
T ss_pred EEEEecCHH
Confidence 999999864
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=4.9e-31 Score=351.56 Aligned_cols=204 Identities=22% Similarity=0.356 Sum_probs=167.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEE-EEEEEcCc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY 618 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~-G~i~~~g~ 618 (1140)
..++++|++|+|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--- 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--- 677 (1622)
T ss_pred CceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---
Confidence 369999999999631 12458999999999999999999999999999999999876 347 78864
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCC
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 691 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~~ 691 (1140)
++.++||+|++.+++ .|++||+.|+. ..++ ++.+++++.++|. +-.+|.+|..|.
T Consensus 678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~------~~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~ 739 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN-ATVRDNILFGS------PFDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739 (1622)
T ss_pred -------cCeEEEEcCccccCC-CCHHHHHhCCC------cccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCCC
Confidence 456899999999886 79999999863 1222 2356666666654 335778887654
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.||||||||++||||+.++|+|++||||||+||+.+++.+.+ .++... +|+|+|++||+++ ....+|+|++|++
T Consensus 740 -~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~- 814 (1622)
T PLN03130 740 -NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHE- 814 (1622)
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeC-
Confidence 599999999999999999999999999999999999988764 555543 5899999999975 5788999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|+++..|+.++
T Consensus 815 G~i~e~Gt~~e 825 (1622)
T PLN03130 815 GMIKEEGTYEE 825 (1622)
T ss_pred CEEEEeCCHHH
Confidence 89999998643
No 362
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.1e-30 Score=265.30 Aligned_cols=228 Identities=21% Similarity=0.282 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEecCch----hh------h-cccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceE
Q 001146 541 SLTFDEVVYSVDMPEE----MK------V-QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 609 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~----~~------~-~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~ 609 (1140)
.+.++||+..++.... .+ . .........+|+||||++++||.++|+|+||||||||||+|+|..+| .
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P--t 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--T 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC--C
Confidence 4788888887765431 10 0 11134567899999999999999999999999999999999998874 5
Q ss_pred EEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 610 TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 610 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
+|+|.++|.-..... -.--+.|.+|.+||+.+.+.+. ..+.++.++.++++++..+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 899999996432111 1122346799999999877654 4567777888999999999999999875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+.+|.||+-|++.|.|...+|+||++||..+--|+.=++.-.+.++++.++++|+|+++|+++ .+.+.|||+++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 679999999999999999999999999999999999999999999999888899999999987 68999999999985
Q ss_pred CCEEEEECCCCcchhHHHHHHhhC
Q 001146 770 GGQEIYVGPLGRHSCHLISYFEAI 793 (1140)
Q Consensus 770 gg~~~~~g~~~~~~~~~~~~f~~~ 793 (1140)
|++.+.|.++ ++.++|...
T Consensus 223 -G~i~~~G~~~----~vi~~Y~~~ 241 (249)
T COG1134 223 -GQIRMEGSPE----EVIPAYEED 241 (249)
T ss_pred -CEEEEcCCHH----HHHHHHHHh
Confidence 8999999984 566666553
No 363
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=282.37 Aligned_cols=221 Identities=19% Similarity=0.316 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++..-+ .+.+.++||||++++||+++|.|-.|-|-+.|+.+|+|..++ .+|+|.++|+++
T Consensus 257 vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEec
Confidence 478888886532 113469999999999999999999999999999999998753 359999999986
Q ss_pred ----Cc-ccccceEEEeccCC---CCCCCCCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 621 ----KQ-ETFARISGYCEQND---IHSPFVTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 621 ----~~-~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
+. ...+..++|||+|. -+.+.+|+.||+.+...-+. ..-.+....++...++++.++.......
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---- 398 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---- 398 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----
Confidence 22 22345789999986 45678999999987654321 1123445566778899999988632221
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
...+.||||++||+-+||+|.++|++|+..+||.|||..+...+.+.|.+.+++|+.|++++-+++ ++++++||+.+|.
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~ 477 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY 477 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee
Confidence 124679999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred cCCEEEEECCCCc
Q 001146 769 RGGQEIYVGPLGR 781 (1140)
Q Consensus 769 ~gg~~~~~g~~~~ 781 (1140)
+ |+++...++++
T Consensus 478 ~-Gri~~~~~~~~ 489 (501)
T COG3845 478 E-GRIVGIVPPEE 489 (501)
T ss_pred C-Cceeccccccc
Confidence 5 89999888764
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=255.15 Aligned_cols=178 Identities=26% Similarity=0.325 Sum_probs=155.6
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc--ccccceEEEeccCCCCCCCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFV 642 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 642 (1140)
++.+++.++||++.+||.+-|.|||||||||||++|+|...+ .+|+|.++|.++.. +.+++.+-|+...+-+-+.+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p--~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP--DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC--CCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 456799999999999999999999999999999999998774 48999999988754 23456677888888889999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
||.|||.|-..+... .+ ...+.++++.+||....|..+ ..||-||||||+|||-+++.+++.+||||++
T Consensus 91 Ta~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 91 TALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccch-----hhcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 999999998765432 11 233688999999999999886 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCH
Q 001146 723 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 755 (1140)
+||.+....+-..+..-+.+|-.||.+||||..
T Consensus 160 aLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 160 ALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999998888889999999999864
No 365
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=3.8e-30 Score=248.29 Aligned_cols=203 Identities=25% Similarity=0.326 Sum_probs=173.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCCC--CCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI--HSPF 641 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~~ 641 (1140)
..+++.|||+++.|+.+|++|.||||||||.|+|+|... |.+|+|.+||++..-. ...+++-+++||+. +-|.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPR 103 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccChh
Confidence 457999999999999999999999999999999999887 4589999999987432 23467899999974 5567
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+.+.+-|.... ++..+.+.+.|.+++.+.++.+||.+- ++.. ++.||-||||||++||||+.+|+|++.||+
T Consensus 104 l~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 104 LRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 77777666554 445677788889999999999998653 3332 467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
..+||...+.++.++.-++.++ |.+-|.++.+.. -+-.+.|+|++|++ |+++..|.+.
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G~t~ 235 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERGSTA 235 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecCChh
Confidence 9999999999999999998754 999999999987 47889999999996 7999999874
No 366
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=312.84 Aligned_cols=204 Identities=20% Similarity=0.273 Sum_probs=156.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+++|. ++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|..
T Consensus 2 i~i~nls~~~g-------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRRG-------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCCC--
Confidence 67899999884 34689999999999999999999999999999999998764 48999998742
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHH-----------------------HccC-CCCCCHHHHHHHHHHHHHHcC
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSA-----------------------WLRL-SPEVDSETRKMFIDEVMELVE 677 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~~~~~l~~~~ 677 (1140)
.++|++|++... ..|+.+.+.-.. .+.. .......+.+.+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888864332 245544332100 0000 000000112346788999999
Q ss_pred Cc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 678 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 678 l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
+. +..+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||+++||.. .
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 4556554 469999999999999999999999999999999999999999998765 569999999986 5
Q ss_pred HHHhhceEEEEecCCEEE-EECCC
Q 001146 757 IFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 757 ~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
+.+.||++++|++ |++. |.|+.
T Consensus 209 l~~~~d~i~~L~~-G~i~~~~g~~ 231 (638)
T PRK10636 209 LDPIVDKIIHIEQ-QSLFEYTGNY 231 (638)
T ss_pred HHHhcCEEEEEeC-CEEEEecCCH
Confidence 7789999999985 6775 66754
No 367
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.3e-29 Score=256.27 Aligned_cols=151 Identities=33% Similarity=0.548 Sum_probs=131.8
Q ss_pred EEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-
Q 001146 544 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 622 (1140)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 622 (1140)
++|+++.++ ++.+|+++|+++++||+++|+||||||||||+++|+|..++ ..|++.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRYG-------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKL 66 (157)
T ss_pred eEEEEEEeC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccC
Confidence 567887774 13589999999999999999999999999999999998764 48999999986542
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 623 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 623 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
...++.++|++| |||||+|
T Consensus 67 ~~~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~ 87 (157)
T cd00267 67 PLEELRRRIGYVPQ-----------------------------------------------------------LSGGQRQ 87 (157)
T ss_pred CHHHHHhceEEEee-----------------------------------------------------------CCHHHHH
Confidence 223456777777 9999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|++||++++.+|++++|||||+|||..++..+.+.++++.+.++|+++++|+++ ++...+|+++++++
T Consensus 88 r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 88 RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998766899999999986 56677899999985
No 368
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=2.6e-29 Score=335.96 Aligned_cols=204 Identities=24% Similarity=0.384 Sum_probs=164.4
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++|.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 635 ~~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-- 699 (1522)
T TIGR00957 635 NSITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-- 699 (1522)
T ss_pred CcEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--
Confidence 36999999999852 12358999999999999999999999999999999999876 3589999986
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc------CC-cccccccccCCCCC
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV------EL-NPLRQSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~l-~~~~~~~~g~~~~~ 692 (1140)
.++||+|++.++ +.|++||+.|+.. .+++. .+++++.+ +. .+-.++.+|..+ .
T Consensus 700 --------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~~----~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~ 759 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEKY----YQQVLEACALLPDLEILPSGDRTEIGEKG-V 759 (1522)
T ss_pred --------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhcCCCCCceecCCC-C
Confidence 489999998876 4899999998531 22222 22333332 22 223356677654 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHH--hhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~--~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
.||||||||++||||+.++|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|++++|++
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~- 836 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSG- 836 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecC-
Confidence 69999999999999999999999999999999999999999998653 235899999999986 3566999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|+++..|+.++
T Consensus 837 G~i~~~g~~~~ 847 (1522)
T TIGR00957 837 GKISEMGSYQE 847 (1522)
T ss_pred CeEEeeCCHHH
Confidence 89999998643
No 369
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=5.4e-29 Score=308.27 Aligned_cols=203 Identities=23% Similarity=0.289 Sum_probs=154.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++|++++|+|||||||||||++|+|...+ .+|+|.++|..
T Consensus 4 l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~-- 66 (635)
T PRK11147 4 ISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDL-- 66 (635)
T ss_pred EEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCC--
Confidence 78999999884 24589999999999999999999999999999999998764 47999988632
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHH------------------------------HHccC-CCCCCHHHHHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFS------------------------------AWLRL-SPEVDSETRKMFID 670 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~~~ 670 (1140)
.+++++|.+......+|.+++..+ ..+.. .......+.+.+++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 246677654333334555543211 00000 00000011234578
Q ss_pred HHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEe
Q 001146 671 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 750 (1140)
Q Consensus 671 ~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~ 750 (1140)
++++.+|+.. +.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||++|
T Consensus 141 ~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivs 210 (635)
T PRK11147 141 EVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFIS 210 (635)
T ss_pred HHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEe
Confidence 8999999863 443 3579999999999999999999999999999999999999999999876 35999999
Q ss_pred cCCCHHHHHhhceEEEEecCCEEE-EECCC
Q 001146 751 HQPSIDIFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 751 H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
|++. .+.+.||+++.|++ |+++ |.|+.
T Consensus 211 Hd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 238 (635)
T PRK11147 211 HDRS-FIRNMATRIVDLDR-GKLVSYPGNY 238 (635)
T ss_pred CCHH-HHHHhcCeEEEEEC-CEEEEecCCH
Confidence 9986 57788999999985 7886 55764
No 370
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.9e-29 Score=306.37 Aligned_cols=181 Identities=25% Similarity=0.267 Sum_probs=149.7
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-----------EcCcccCcc-----cccceEE
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE-----TFARISG 630 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~ 630 (1140)
..+|++++ .+++||+++|+||||||||||+|+|+|...+ ..|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP--NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC--CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 35899999 9999999999999999999999999998764 379997 888775321 1122356
Q ss_pred EeccCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHH
Q 001146 631 YCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 707 (1140)
Q Consensus 631 ~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~a 707 (1140)
+.+|.....|. .||+|++... +.+..++++++.+++.+..|+.+ ..||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 66665444333 3999998631 12235789999999988777764 5699999999999999
Q ss_pred HhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 708 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 708 l~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|.+
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999988 999999999986 67888999999973
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=1.2e-28 Score=328.64 Aligned_cols=191 Identities=21% Similarity=0.356 Sum_probs=151.6
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
+++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 5689999999999999999999999999999999998774 489999987 3899999999887 59999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHH--HHHHHcCC-cccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFID--EVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 723 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~l-~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsg 723 (1140)
|+.|+.. .+.+..++.++ .+.+.++. .+..++.+|..+ ..||||||||++||||++.+|+++||||||||
T Consensus 506 NI~~g~~------~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g-~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 506 NIIFGLS------YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG-ITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHhccc------cchHHHHHHHHHHhHHHHHHhccccccccccCcC-CCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9998632 11111111111 11122211 222345677654 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 724 LDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 724 LD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
||+.+++.+.+. ++++. +|+|+|++||+++ ....+|++++|++ |+++..|+.++
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~~-g~i~~~g~~~~ 633 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLHE-GVCYFYGTFSE 633 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 999999999985 56654 4899999999986 3456999999985 89999998653
No 372
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=234.87 Aligned_cols=211 Identities=28% Similarity=0.330 Sum_probs=156.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++.++++..|. ...-.+||||++.|||+++|+|.|||||||||++|+++..+ ..|+|.+...+-.
T Consensus 7 L~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~~~ 71 (258)
T COG4107 7 LSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRDGQ 71 (258)
T ss_pred eeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCCCC
Confidence 56677776663 22347899999999999999999999999999999999874 4788887653211
Q ss_pred --------ccc----ccceEEEeccCCCCCCCC------CHHHHHHH-HHHccCCCCCCHHHHHHHHHHHHHHcCCcccc
Q 001146 622 --------QET----FARISGYCEQNDIHSPFV------TIYESLLF-SAWLRLSPEVDSETRKMFIDEVMELVELNPLR 682 (1140)
Q Consensus 622 --------~~~----~~~~~~~v~q~~~~~~~l------Tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 682 (1140)
+.. .|..-|+|.|+|.---.+ .+.|-+.- +++- . ...++...+.++.++++..+
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-----Y--G~iR~~a~~WL~~VEI~~~R 144 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-----Y--GNIRAEAQDWLEEVEIDLDR 144 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-----h--hhHHHHHHHHHHhcccCccc
Confidence 111 233469999986432222 23343321 1111 1 12234456788888776422
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhh
Q 001146 683 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 683 ~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 761 (1140)
.. ...+..|||++||+.|||-|++.|+++|+||||-|||..-+..+.+.++.+..+ |..++++|||.. -..-+.
T Consensus 145 --iD--D~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla 219 (258)
T COG4107 145 --ID--DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLA 219 (258)
T ss_pred --cc--CcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhh
Confidence 11 124679999999999999999999999999999999999999999999999754 999999999976 345568
Q ss_pred ceEEEEecCCEEEEECCCC
Q 001146 762 DELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 762 d~v~~l~~gg~~~~~g~~~ 780 (1140)
||.++|++ |+++..|-.+
T Consensus 220 ~rlmvmk~-g~vve~GLTD 237 (258)
T COG4107 220 DRLMVMKQ-GQVVESGLTD 237 (258)
T ss_pred hcceeecC-CCEecccccc
Confidence 99999985 8999999765
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=3.6e-28 Score=286.69 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++.+|++.+|. .+++|+|+|+++.+|+.+||||+||||||||||+|+|...+ .+|+|...+.
T Consensus 3 ~i~~~~ls~~~g-------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAYG-------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEeeC-------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC--
Confidence 478889998873 45799999999999999999999999999999999998764 4788876542
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc-------------CCCC--------------CCHHHHHHHHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-------------LSPE--------------VDSETRKMFIDEVM 673 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~l 673 (1140)
..++|++|++...+..||.+.+.-+..-. .... .+.-+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 25899999999999999999886542100 0000 00001124567788
Q ss_pred HHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 674 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 674 ~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
..+|+.+. ++.+ +.||||||.||++|++|+.+|++|||||||++||..+...+-+.|++. .| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 5554 579999999999999999999999999999999999999999999754 46 999999994
Q ss_pred CHHHHHhhceEEEEecCCEEEEECCC
Q 001146 754 SIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 754 ~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
..+-+.|++|+-+++|.-..|.|.-
T Consensus 211 -~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 211 -YFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred -HHHHHHhhheEEecCCceeEecCCH
Confidence 4677899999999975455566653
No 374
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=8.9e-28 Score=258.91 Aligned_cols=197 Identities=19% Similarity=0.245 Sum_probs=131.7
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHH-HHHhc--CCc--C--ceEEEEEEEcCc-ccCccccc-ceEEEeccCC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-DVLAG--RKT--G--GYITGNITISGY-PKKQETFA-RISGYCEQND 636 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~q~~ 636 (1140)
+..+|+||||++++||+++|+||||||||||+ ..+.. ... . .+..+. .+... .......+ ....+..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 34589999999999999999999999999995 44432 100 0 000000 00000 00001111 1223333333
Q ss_pred C--CCCCCCHH---HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 001146 637 I--HSPFVTIY---ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVA 710 (1140)
Q Consensus 637 ~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv~ia~al~~ 710 (1140)
. ..|..+|. |...+...+. ..+...++ .+.++.+++.+ ..+.. +..||||||||++||++|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 3222221111 11111222 46788899875 34544 35799999999999999999
Q ss_pred CC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE------ecCCEEEEEC
Q 001146 711 NP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM------KRGGQEIYVG 777 (1140)
Q Consensus 711 ~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l------~~gg~~~~~g 777 (1140)
+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ . .+.||++++| + +|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~-~~~~d~i~~l~~~~~~~-~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-T-IRAADHVIDIGPGAGVH-GGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-H-HHhCCEEEEeCCCcccc-CCEEEecC
Confidence 98 599999999999999999999999998878999999999985 3 4789999999 6 58999876
No 375
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.2e-27 Score=301.57 Aligned_cols=206 Identities=22% Similarity=0.383 Sum_probs=170.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|.+++-+.. +..+.|+|||++|++|+++||+||-|||||+||.+|.|..+ ..+|++.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS 583 (1381)
T ss_pred CceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe
Confidence 3468999999986521 12236999999999999999999999999999999999877 56899999884
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCC
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 691 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~~ 691 (1140)
++||+|++.++. .|||||+.|+.. .++ ++.+++++.+.|. ..-.|.+|+.|+
T Consensus 584 ----------iaYv~Q~pWI~n-gTvreNILFG~~------~d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQN-GTVRENILFGSP------YDE----ERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ----------EEEeccccHhhC-CcHHHhhhcCcc------ccH----HHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 799999998875 899999999742 222 2356666666554 334567888776
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||+++|||+-+|++|+|||.|.|++|++..+++.+..-+..-+++|+|.+|||. +..+.+|.|++|++ |
T Consensus 643 -nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~-G 718 (1381)
T KOG0054|consen 643 -NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD-G 718 (1381)
T ss_pred -CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC-C
Confidence 4999999999999999999999999999999999999988876544444689999999986 46889999999985 8
Q ss_pred EEEEECCCCc
Q 001146 772 QEIYVGPLGR 781 (1140)
Q Consensus 772 ~~~~~g~~~~ 781 (1140)
++...|+.++
T Consensus 719 ~I~~~Gty~e 728 (1381)
T KOG0054|consen 719 KIVESGTYEE 728 (1381)
T ss_pred eEecccCHHH
Confidence 9999999854
No 376
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=1.1e-27 Score=319.13 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=146.8
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++|++|++.++ ..||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 46799999999999999999999999999999999998764 47988752 4689999998876 47999
Q ss_pred HHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
||+.|... .+.+..+ ...++.++.+ .+-.++.+|.. ...||||||||++|||||+.+|++++||||
T Consensus 739 enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 739 GNILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 99998421 1111111 1122233333 11123444543 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 721 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
|++||+.+++.+.+.+.....+|+|+|++||+++ ..+.+|++++|++ |++++.|+.+
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~-G~i~~~G~~~ 866 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGD-GRVEFSGSSA 866 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999998887754322235899999999975 4578999999985 8999999864
No 377
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=8.1e-28 Score=296.99 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=144.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGY 618 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~ 618 (1140)
..|.++|++++|. ++.+|+|+||+|++|+.+||+|||||||||||++|+|+... -+..|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 4599999999984 23589999999999999999999999999999999986311 122455543322
Q ss_pred cc-----Cc------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH------------------
Q 001146 619 PK-----KQ------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE------------------ 663 (1140)
Q Consensus 619 ~~-----~~------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~------------------ 663 (1140)
.. +. ...++.+++++|++.+... ++.++... .. ....+.+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~-~~---~~~~~~~~~~~r~~~~~~~~~~~~~ 317 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKG-AN---KDGVDKDAVSQRLEEIYKRLELIDA 317 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccc-cc---ccccchHHHHHHHHHHHHHHHhcCc
Confidence 11 00 0001123344443221110 11111000 00 0000111
Q ss_pred -HHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 664 -TRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 664 -~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
..++++.++++.+|+. +..++. +..||||||||++||++|+.+|++|||||||++||+.+...+.+.|+++
T Consensus 318 ~~~~~r~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 390 (718)
T PLN03073 318 YTAEARAASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-- 390 (718)
T ss_pred chHHHHHHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--
Confidence 1223456677777775 333443 3579999999999999999999999999999999999999999999875
Q ss_pred CCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EECCC
Q 001146 742 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPL 779 (1140)
Q Consensus 742 ~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~ 779 (1140)
+.|+|+++|+.. .+.+.||++++|++ |++. |.|+.
T Consensus 391 -~~tviivsHd~~-~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 391 -PKTFIVVSHARE-FLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred -CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 689999999975 57788999999985 7886 66664
No 378
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.8e-27 Score=254.28 Aligned_cols=195 Identities=25% Similarity=0.293 Sum_probs=148.5
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHh-----c---CC--cC---ceEE------EEEEEcCcccCccc-----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-----G---RK--TG---GYIT------GNITISGYPKKQET----- 624 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~-----g---~~--~~---~~~~------G~i~~~g~~~~~~~----- 624 (1140)
-|+|||.+|+.|++++|.|+||||||||++.+. . .. .+ .... --+.++..|+....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 499999999999999999999999999998552 1 10 00 0111 23677776653210
Q ss_pred --------ccc----------------eEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc
Q 001146 625 --------FAR----------------ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 680 (1140)
Q Consensus 625 --------~~~----------------~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 680 (1140)
.|+ .+.|..++......+||.|++.|...++ ..++..++++.+||.+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCch
Confidence 010 1334555555567899999999875432 1123567899999976
Q ss_pred c-ccccccCCCCCcCCHHHHHHHHHHHHHhhC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 681 L-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 681 ~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
. .+.. .+.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|+|+++|++.
T Consensus 161 l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-- 233 (261)
T cd03271 161 IKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-- 233 (261)
T ss_pred hhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--
Confidence 3 4443 357999999999999999996 7999999999999999999999999999888999999999985
Q ss_pred HHHhhceEEEEe-----cCCEEEEECCC
Q 001146 757 IFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 757 ~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
..+.+|+++.|. +||++++.|++
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 346799999994 47999999974
No 379
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.3e-27 Score=237.84 Aligned_cols=134 Identities=34% Similarity=0.534 Sum_probs=118.3
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
|+|||+++++||+++|+||||||||||+++|+|...+ .+|.|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998763 58999999998765 346778999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
| ..++.++++++.+++.+..++.++... ..||||||||++||+||+++|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 122347889999999888888776543 6799999999999999999999999999996
No 380
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.6e-27 Score=226.31 Aligned_cols=213 Identities=23% Similarity=0.273 Sum_probs=161.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 619 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 619 (1140)
.+..+|++.+...... ..-..++|+|+||+++.||+++|=||||+||||||++|-|.+.+ .+|+|.+.-..
T Consensus 4 ~l~v~~~~KtFtlH~q------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~--d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP--DEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC--CCceEEEEeCcc
Confidence 4667777665543211 11245799999999999999999999999999999999997764 47888875432
Q ss_pred -cC-----c----ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 001146 620 -KK-----Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 689 (1140)
Q Consensus 620 -~~-----~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 689 (1140)
++ . .-.++-+|||.|.-...|..+..|-+.-.+.-+ +...+.-+++..+++..+++.+..-.+ +
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L---a 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL---A 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC---C
Confidence 11 1 123456899999877777766555443322222 344555566778899999987543332 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
....||||+|||.|||.++.+-+||+|||||+.||..++..+++++++.+.+|..+|=+-||-+ --...+||++-+..
T Consensus 150 -PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 150 -PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred -CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 3569999999999999999999999999999999999999999999998888999999999843 22457899988864
No 381
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=1.6e-26 Score=243.10 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=130.8
Q ss_pred e-eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC-------ceEEEEEEEcCcccCcccccceEEEeccCCCCCCC
Q 001146 570 L-NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-------GYITGNITISGYPKKQETFARISGYCEQNDIHSPF 641 (1140)
Q Consensus 570 L-~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ 641 (1140)
+ +++++++++| +++|+||||||||||+++|+|...+ +...|++.++|.+......++.+++++|++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 5 6799999999 9999999999999999999986422 112346777777654333457799999987665
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh----hCCcEeEE
Q 001146 642 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV----ANPSIIFM 717 (1140)
Q Consensus 642 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~----~~p~illl 717 (1140)
|.. . . +++++++++. .+..+.. +..||||||||++||++|+ .+|++++|
T Consensus 89 --------~~~--~-----~----~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illl 141 (197)
T cd03278 89 --------YSI--I-----S----QGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVL 141 (197)
T ss_pred --------eeE--E-----e----hhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 110 0 0 1235666665 3334443 3579999999999999997 46799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||+|||+.....+.+.|+++++ +.|||++||++. ..+.+|+++.+...+
T Consensus 142 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 142 DEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 999999999999999999999865 789999999975 457899999998654
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=5.7e-27 Score=224.93 Aligned_cols=194 Identities=25% Similarity=0.437 Sum_probs=164.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
|-.+|+++..||+.-++|||||||||||..++|..+. +|+|.++|.+... .+..++.+|..|+..-...+.|..
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 7789999999999999999999999999999998753 7999999998754 345566789988776666688888
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-----CC--cEeEEeC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-----NP--SIIFMDE 719 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~-----~p--~illlDE 719 (1140)
.+... . +..++...++++...+++.+...+. ++.|||||=|||-+|-..+. || ++|+|||
T Consensus 92 YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH----Q----PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc----C----chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 87653 2 2345566788999999998766654 46799999999999987654 55 6999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCc
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 781 (1140)
|.++||...+..+-..|.+++.+|++||++.||++ ...+.+|++.+|++ |++...|..++
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhh
Confidence 99999999999999999999999999999999998 67889999999996 79999998764
No 383
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.1e-26 Score=268.42 Aligned_cols=94 Identities=26% Similarity=0.435 Sum_probs=87.4
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +++.+|||||||||||||||++||+||+|||||||||++||..|+++|.+.. +++|+++|+ ||++|++.||+|
T Consensus 598 VG-EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIA---HRLSTV~~Ad~I 672 (716)
T KOG0058|consen 598 VG-EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIA---HRLSTVRHADQI 672 (716)
T ss_pred cC-CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEe---hhhhHhhhccEE
Confidence 66 4556799999999999999999999999999999999999999999998755 468888888 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+|+++|+++|.|+|+|+++
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999999999995
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=1e-23 Score=230.84 Aligned_cols=197 Identities=22% Similarity=0.281 Sum_probs=144.8
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
|+==.+++..||+++++||||-||||+.++|+|..+++ +|+ .. .-.++|=||--.--...||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 33345677889999999999999999999999987743 554 11 123677777544445689999876
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 729 (1140)
-...-+.... -...++++-|+|++..+..+ .+|||||.|||+||.+|.+++++.+||||++-||++.+
T Consensus 424 ~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 5433221111 12357888899998888875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC---cchhHHHHHHhhCC
Q 001146 730 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG---RHSCHLISYFEAIP 794 (1140)
Q Consensus 730 ~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~---~~~~~~~~~f~~~~ 794 (1140)
..+.+.+|+..+ .++|.+++-||.-. +--+.||+++.. |+.--+|... ...+.+..|.+.++
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l~ 557 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNLG 557 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHcC
Confidence 999999999885 47899999999763 445678888875 3333333211 12234555666653
No 385
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=3.6e-24 Score=234.91 Aligned_cols=188 Identities=16% Similarity=0.230 Sum_probs=130.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC----------------CcCce----EEE--EEEEcCcc----
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----------------KTGGY----ITG--NITISGYP---- 619 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~----------------~~~~~----~~G--~i~~~g~~---- 619 (1140)
++.++++++ |++++|+||||||||||+++|++. ..++. ..+ ++.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 345777876 789999999999999999999832 11110 112 45555532
Q ss_pred c--CcccccceEEEeccCCCCCC-CCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 620 K--KQETFARISGYCEQNDIHSP-FVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 620 ~--~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
. .....++.+++++|+..+++ ..|..|...+............. ... .++.+.+++.+..+.. .+.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~~~~~~-----~~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQDEQQE-----MQQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhcccccccc-----ccccC
Confidence 1 11235667899999877776 36777766665544322110000 001 1233334444333333 35799
Q ss_pred HHHHHHHHHHHHHhh----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 696 TEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 696 gGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.+|++++|.-
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~ 235 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF 235 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence 999999999999974 6899999999999999999999999999865 78899899984 57899999999963
No 386
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.91 E-value=8.8e-24 Score=246.86 Aligned_cols=199 Identities=25% Similarity=0.352 Sum_probs=157.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++|++..-| .+.+.|++.|+.++|||-+.|.||||||||||+|+|+|.-+.+ +|+|..-
T Consensus 390 ~~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P-- 453 (604)
T COG4178 390 DHGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP-- 453 (604)
T ss_pred cceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--
Confidence 46799999998654 2346899999999999999999999999999999999997765 5666432
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC-CCCCcCCHH
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL-PGVSGLSTE 697 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~-~~~~~LSgG 697 (1140)
. ...+-|+||.|.+.. -|.||-+.|.... +..+++ .+.+++..+||.+..+...+. +-.+.||+|
T Consensus 454 -~-----~~~~lflpQ~PY~p~-GtLre~l~YP~~~---~~~~d~----~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 454 -A-----DSALLFLPQRPYLPQ-GTLREALCYPNAA---PDFSDA----ELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred -C-----CCceEEecCCCCCCC-ccHHHHHhCCCCC---CCCChH----HHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 1 134689999988754 5999999874321 123333 367899999999887776442 223569999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
||||+++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +....++.+-+.++
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~~ 589 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLDD 589 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999998643 4899999999975 45666776666543
No 387
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=3.9e-24 Score=226.46 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=124.6
Q ss_pred ceEEEeCceEEEEeCCCCCChHHHHHHHh----cCCcCceEEEEEEEcCcccCcccccceEEEeccCC-----CCCCCCC
Q 001146 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLA----GRKTGGYITGNITISGYPKKQETFARISGYCEQND-----IHSPFVT 643 (1140)
Q Consensus 573 vs~~i~~G~~~al~G~sGaGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-----~~~~~lT 643 (1140)
.++++.+| +++|+||||||||||+++|. |...++ .|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 44567777 99999999999999999995 765432 344431222222233456788999987 3334458
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH------HHHHHHHhhCCcEeEE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR------LTIAVELVANPSIIFM 717 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR------v~ia~al~~~p~illl 717 (1140)
+.|++.+. ..++ +++.+ +.. ++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~---------~~~~----~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQGE----SNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------chHH----HHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88887652 1111 22222 222 35799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 718 DEPTSGLDARAAA-IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 718 DEPtsgLD~~~~~-~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||++||+.++. .+.+.|++++++ |.|+|+++|++. ..+.+|+++.|.++|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 9999999999999 999999998766 899999999964 4578999999987764
No 388
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=2.4e-25 Score=236.80 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=132.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++++++++++ ++++|+||||||||||+++|.- ++|.+... ..++.+++++|+...+|.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRASK-MRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHHH-hhhhhHHHHhcCCCCCCCCce
Confidence 34568899987 8999999999999999999961 12222111 112457888888888888888
Q ss_pred HHHHHHHHHccCC-----CCCCHHHHHH--HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh----CCc
Q 001146 645 YESLLFSAWLRLS-----PEVDSETRKM--FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----NPS 713 (1140)
Q Consensus 645 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~----~p~ 713 (1140)
+|.+.+....... .....+.... ..+++++.+++.+..++.+ +.||+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8877654432100 0011110000 0245667777776666653 4699999999999999974 579
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
+++|||||+|||+.+...+.+.|++++ ++.|+|+++|++ ++.+.||++++|...
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~~ 205 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYKT 205 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEec
Confidence 999999999999999999999999985 467899999985 678999999999863
No 389
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=5.9e-24 Score=227.54 Aligned_cols=180 Identities=17% Similarity=0.089 Sum_probs=121.5
Q ss_pred eCceEEEe-CceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC--cccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 571 NGVSGAFR-PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 571 ~~vs~~i~-~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
++++|... +|++++|+||||||||||+++|++...+ +..+....+. ........+..+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 44566543 5899999999999999999999863321 1222222211 11111223456888888763211 11111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh----------CCcEeEE
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----------NPSIIFM 717 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~----------~p~illl 717 (1140)
. ..+.++..+.+ .++..++.+..+.. .+.||||||||++||++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 22222211111 12333344444433 35799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||+|||+.+...+.+.|++++++|+|+|++||+++ .+...+|+++++++||
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999998777999999999986 5678889999999765
No 390
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.9e-24 Score=229.89 Aligned_cols=208 Identities=21% Similarity=0.247 Sum_probs=162.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.+++++||.|.|+... -=+..||++|+.||++-|+|.|||||||++++|.|...| .+|+|.+||+|
T Consensus 321 ~~lelrnvrfay~~~~------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCcc
Confidence 4799999999996211 127889999999999999999999999999999999874 48999999999
Q ss_pred cCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 001146 620 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 696 (1140)
Q Consensus 620 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg 696 (1140)
++. +++|+..+-|+.|-.+|+.+- .++.... .+.++..++.+.+.+.-.-..|+-..-.||.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as---~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt 451 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKAS---PQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCC---hHHHHHHHHHHHHhhhhcccCCccccccccc
Confidence 865 356776666777666665321 1111111 2336777888877765444333322345999
Q ss_pred HHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH-HHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 697 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 697 GqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+- .+.++|+||+.+|||-. -+..+||++.+.+ |+++.
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e 528 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 528 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc-Cceee
Confidence 99999999999999999999999999999999998887664 45677999999999954 5889999999986 78887
Q ss_pred ECCC
Q 001146 776 VGPL 779 (1140)
Q Consensus 776 ~g~~ 779 (1140)
.-+.
T Consensus 529 ~tge 532 (546)
T COG4615 529 LTGE 532 (546)
T ss_pred cccc
Confidence 6543
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=5.4e-24 Score=234.04 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=131.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc-cc-Cc----ccccceEEEeccCC---------CCCCCCCH
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY-PK-KQ----ETFARISGYCEQND---------IHSPFVTI 644 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~-~~----~~~~~~~~~v~q~~---------~~~~~lTv 644 (1140)
..+++|+||||||||||+++|++...+. ..|++...|. +. .. ...+..+++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 3499999999999999999999865421 2356666665 21 10 11234688899874 34567899
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc---------------cccCCCCCcCCHHHHHHHHHHHHHh
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS---------------LVGLPGVSGLSTEQRKRLTIAVELV 709 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------------~~g~~~~~~LSgGqrqRv~ia~al~ 709 (1140)
.+++......+...+ .++...+.+.++++.+++..-... ..-...+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 988865432111000 111223567888999998511000 0001124679999999999999998
Q ss_pred ----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 710 ----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 710 ----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+|+++++||||+|||+.+...+.+.|+++. +|.|+|++||++ ++.+.+|+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 489999999994 6788899998876
No 392
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5e-24 Score=232.13 Aligned_cols=95 Identities=33% Similarity=0.456 Sum_probs=89.0
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||..+.+ |||||||||||||+|+++|+||+||||||+||+.+|..++.+|++.+ .++||+||+ ||++|+-.||.
T Consensus 392 ~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlvia---hrlsti~~ade 466 (497)
T COG5265 392 GVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIA---HRLSTIIDADE 466 (497)
T ss_pred ccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEe---ehhhhccCCce
Confidence 36765555 99999999999999999999999999999999999999999999855 689999999 99999999999
Q ss_pred eEEecCCeEEEecCcchHHH
Q 001146 81 IILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~ 100 (1140)
|+||++|+++|-|+|+||++
T Consensus 467 iivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 467 IIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999996
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.7e-21 Score=215.79 Aligned_cols=203 Identities=21% Similarity=0.244 Sum_probs=151.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..+++.+|+|.|+-. .-+++.+++..++.-+-.+++|+||+||||+++++.|... +..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 4568999999988521 1157899999999999999999999999999999998655 2356555433
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
|.+++|-.|...-+-.+.|.+ +.+....+ ++...++ ++.-+..+||+.-.-. ..+.+|||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~----~si~~LSGGQ 487 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTEEE----IRRHLGSFGLSGELAL----QSIASLSGGQ 487 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCHHH----HHHHHHhcCCCchhhh----ccccccCCcc
Confidence 456888888755444444433 33333333 2223333 4667888998743211 1246799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
|-||++|.....+|.+|+|||||+.||-.+-..+.++|++. +-.||+++|+.+ .+-..|+.+.+..+ |++. +.|
T Consensus 488 KsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ieg 562 (582)
T KOG0062|consen 488 KSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTPIEG 562 (582)
T ss_pred hhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEeeec
Confidence 99999999999999999999999999999999999999876 358999999975 57788999999986 5554 445
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
No 394
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.9e-21 Score=225.79 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC---cEeEE
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 717 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p---~illl 717 (1140)
.|||.|...|.... +. -.+.-+.+..+||.-. ..|.+ ...|||||.|||-+|.+|.++. .+.+|
T Consensus 783 ~MTveEA~~FF~~~------p~---I~rkLqtL~dVGLgYi---~LGQp-atTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------PK---IARKLQTLVDVGLGYI---KLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------hH---HHHHHHHHHHcCcceE---ecCCc-cccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36788877775421 11 1123455666777532 23333 3469999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
||||+||-....+.+++.|.++.++|.|||++.|.+ ++.+.+|.|+=|- +||+++..|+|++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHH
Confidence 999999999999999999999999999999999986 5789999999883 5789999999853
No 395
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=2.5e-21 Score=251.39 Aligned_cols=125 Identities=23% Similarity=0.309 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC---CcEeEE
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFM 717 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~---p~illl 717 (1140)
.|||.|.+.|... ..+-.+.-+.++.+||.... .|.+ ...|||||.||+-+|..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq~-~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQN-LSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCCc-CCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3577777666421 01122234677778886432 2332 356999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
||||+||++.....+++.|+++.+.|.|||++.|++ ++.+.+|.++=|. +||++++.|+++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHH
Confidence 999999999999999999999999999999999996 5788899999995 568999999985
No 396
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.3e-23 Score=227.13 Aligned_cols=95 Identities=29% Similarity=0.440 Sum_probs=90.1
Q ss_pred CCCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 1 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 1 ~VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+||+.+.| |||||||||||||++++.|.|++|||||||||..+|..++.+|.+++ .+|||||++ ||+||+-+||.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvA---HRLSTivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVA---HRLSTIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEe---eeehheecccE
Confidence 47876666 99999999999999999999999999999999999999999999987 489999999 99999999999
Q ss_pred eEEecCCeEEEecCcchHHH
Q 001146 81 IILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~~ 100 (1140)
|+|+++|+++|-|+|+|++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999985
No 397
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.86 E-value=2.5e-22 Score=245.00 Aligned_cols=94 Identities=32% Similarity=0.434 Sum_probs=87.6
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| ++..+||||||||++|||||+++|+||+||||||+||..+|..|.+.|++.. .++|+|+|| ||+++++.+|+|
T Consensus 603 v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~Ia---HRl~ti~~adrI 677 (709)
T COG2274 603 VG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIA---HRLSTIRSADRI 677 (709)
T ss_pred cc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEE---ccchHhhhccEE
Confidence 45 4567799999999999999999999999999999999999999999999855 467888899 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++||++++|||+|+++
T Consensus 678 iVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 678 IVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEccCCceeccCCHHHHHH
Confidence 9999999999999999996
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=2e-21 Score=192.03 Aligned_cols=226 Identities=16% Similarity=0.207 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc-e-EEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y-ITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~-~-~~G~i~~~g~~ 619 (1140)
+..+|++...++. .+..+++++||+++..||+-+++|.||||||-..|+|+|..+.. . ......+++.+
T Consensus 4 LDIrnL~IE~~Ts---------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~id 74 (330)
T COG4170 4 LDIRNLTIEFKTS---------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDID 74 (330)
T ss_pred ccccceEEEEecC---------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccch
Confidence 3456777666543 35567899999999999999999999999999999999954321 1 12334455544
Q ss_pred c---Cccccc----ceEEEeccCCC--CCCCCCHHHHHHHHHHccCCCC-CC--HHHHHHHHHHHHHHcCCccccccccc
Q 001146 620 K---KQETFA----RISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE-VD--SETRKMFIDEVMELVELNPLRQSLVG 687 (1140)
Q Consensus 620 ~---~~~~~~----~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~g 687 (1140)
. ..+..| +.+++++|++. +.|.-+|...+.-..-.....+ .. -.-|+++.-+++..+|+.+..|-...
T Consensus 75 LL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~S 154 (330)
T COG4170 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRS 154 (330)
T ss_pred hhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHh
Confidence 2 222223 45678999874 3444444433321110000000 00 01244556789999999987776655
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
.| .+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||+.++||.. .+-+.+|++-+
T Consensus 155 YP--~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~V 231 (330)
T COG4170 155 YP--YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINV 231 (330)
T ss_pred Cc--chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEE
Confidence 54 57999999999999999999999999999999999999999999998864 5899999999987 58899999999
Q ss_pred EecCCEEEEECCCC
Q 001146 767 MKRGGQEIYVGPLG 780 (1140)
Q Consensus 767 l~~gg~~~~~g~~~ 780 (1140)
|.- |+.+..+|.+
T Consensus 232 lYC-GQ~~ESa~~e 244 (330)
T COG4170 232 LYC-GQTVESAPSE 244 (330)
T ss_pred EEe-cccccccchh
Confidence 996 7888888864
No 399
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=8.9e-22 Score=208.13 Aligned_cols=95 Identities=26% Similarity=0.335 Sum_probs=83.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+..+|||||||||+|||||+.+|+||++||||||||+.+...|.+.|+++-++.|.||++..|+.- -+=+.+|++.|
T Consensus 136 ~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVav 214 (339)
T COG1135 136 DRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAV 214 (339)
T ss_pred ccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheE
Confidence 34667899999999999999999999999999999999999999999999988888888887555432 45556799999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++|+|+..++-
T Consensus 215 m~~G~lvE~G~v~~vF 230 (339)
T COG1135 215 LDQGRLVEEGTVSEVF 230 (339)
T ss_pred eeCCEEEEeccHHHhh
Confidence 9999999999998875
No 400
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.7e-21 Score=196.02 Aligned_cols=94 Identities=21% Similarity=0.374 Sum_probs=81.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+..+|||||||||||||||.-+|+|+++||||||||++...+|.+.++++|+ .|.|.+|..|.- .=.-+-+|+|+.
T Consensus 131 ~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM-~FAr~VadrviF 208 (240)
T COG1126 131 DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEM-GFAREVADRVIF 208 (240)
T ss_pred hhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechh-HHHHHhhheEEE
Confidence 456789999999999999999999999999999999999999999999999986 556666655533 345567899999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|++++.-
T Consensus 209 md~G~iie~g~p~~~f 224 (240)
T COG1126 209 MDQGKIIEEGPPEEFF 224 (240)
T ss_pred eeCCEEEEecCHHHHh
Confidence 9999999999888765
No 401
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.4e-22 Score=222.58 Aligned_cols=94 Identities=28% Similarity=0.405 Sum_probs=83.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ .++-||||||||||||||+++||+|+++|||||+||+.+|..+++.+++.. .++|.|.|+ |++++.+.||+|
T Consensus 481 VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~Iv---H~l~ll~~~DkI 555 (591)
T KOG0057|consen 481 VGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIV---HRLDLLKDFDKI 555 (591)
T ss_pred Hhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEE---ecchhHhcCCEE
Confidence 564 445599999999999999999999999999999999999999999999833 344555566 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|++.+.|+|+|+++
T Consensus 556 ~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 556 IVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEEECCeeEEeccHHHHhh
Confidence 9999999999999999997
No 402
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=3.9e-21 Score=215.70 Aligned_cols=212 Identities=18% Similarity=0.223 Sum_probs=137.3
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...+.++|+++++. ++.+++|+++++.+|+-++|+|||||||||+|++|+|+..|-+..=.++.-..
T Consensus 73 s~dvk~~sls~s~~-------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 (614)
T ss_pred cccceeeeeeeccC-------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc
Confidence 44688889888764 45689999999999999999999999999999999997665433333333332
Q ss_pred ccCcccccceEEEeccCCCCCCCCCHHHHHHHHH-HccCC----------------CCCCHHHHHHHHHHHHHHcCCc-c
Q 001146 619 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLS----------------PEVDSETRKMFIDEVMELVELN-P 680 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~----------------~~~~~~~~~~~~~~~l~~~~l~-~ 680 (1140)
+....... .+-++.+ +.-..+..+.+-. .+... ...+.+.-+.++.+++..+|-. +
T Consensus 140 e~~ps~~~-av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 140 EIEPSEKQ-AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred cCCCchHH-HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence 22211100 0000000 0001111111100 00000 0011111222334445444432 3
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCC-EEEEEecCCCHHHHH
Q 001146 681 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVCTIHQPSIDIFE 759 (1140)
Q Consensus 681 ~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~-tvi~~~H~~~~~~~~ 759 (1140)
.++.. +.++|||+|+|+++||+|..+|++|||||||++||.++...+-+.|.+. .+ ++|+++|.-+ .+-.
T Consensus 214 m~~k~-----~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~ 284 (614)
T KOG0927|consen 214 MQDKK-----VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNG 284 (614)
T ss_pred HHHHH-----hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhh
Confidence 34433 4679999999999999999999999999999999999999988888654 33 8999999754 5678
Q ss_pred hhceEEEEecCCE-EEEECCC
Q 001146 760 AFDELFLMKRGGQ-EIYVGPL 779 (1140)
Q Consensus 760 ~~d~v~~l~~gg~-~~~~g~~ 779 (1140)
.|.+|+-|.+ ++ +.|.|+-
T Consensus 285 vCT~Ii~l~~-kkl~~y~Gny 304 (614)
T KOG0927|consen 285 VCTNIIHLDN-KKLIYYEGNY 304 (614)
T ss_pred Hhhhhheecc-cceeeecCCH
Confidence 9999999986 56 5566664
No 403
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=211.24 Aligned_cols=207 Identities=23% Similarity=0.282 Sum_probs=156.3
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-+++++|+.+-|. .+..+++|+|++|+.|+.+.|+||||||||+|+++|+|.-+. .+|.+.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~--~~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS--TGGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc--CCCeEEecccC
Confidence 56999999987653 145688999999999999999999999999999999998652 35776543322
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC------CCCc
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------GVSG 693 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~------~~~~ 693 (1140)
. .+.+-|+||.|.. +.-|.||.+.|...--.+. .+....+.+.+.++.++|.|..+..-|.. ....
T Consensus 499 ~-----~~~lfflPQrPYm-t~GTLRdQvIYP~~~~~~~--~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 G-----PKDLFFLPQRPYM-TLGTLRDQVIYPLKAEDMD--SKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred C-----CCceEEecCCCCc-cccchhheeeccCcccccc--ccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 1 1447899998865 4459999998863211110 01112234677888888887766554432 1235
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||+||+||++.||-+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-+.|+.+ +.+.=|.++-|+-+|+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDGRGS 644 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecCCCc
Confidence 999999999999999999999999999999999999998888765 4999999999976 4555588888874443
No 404
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.2e-20 Score=198.63 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=116.4
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCc---eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
++++++++.+| +.+|+||||||||||+.+|.....+. ...|. .+.. -+........+.+.+|.....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-~~~~-~i~~~~~~~~i~~~~~~~~~~~------ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-SLKD-LIKDGESSAKITVTLKNQGLDA------ 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-cHHH-HhhCCCCeEEEEEEEEcCCccC------
Confidence 56788888887 88999999999999999997422110 00111 0000 0011111344667777654443
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH----hhCCcEeEEeCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTS 722 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al----~~~p~illlDEPts 722 (1140)
| .... ..++.++++++. .+..+.. ++.||+|||||++||++| +.+|++++|||||+
T Consensus 83 ~-----------~~~~-~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 83 N-----------PLCV-LSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred C-----------cCCH-HHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 0 1111 112345666665 4444444 357999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC---CCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 723 GLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~~~---g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
|||..+...+.+.|+++.++ +.|||+++|++. ++.+ +|+|-+|..
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~ 190 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRM 190 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEe
Confidence 99999999999999987643 368999999987 4555 599999985
No 405
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.84 E-value=2.8e-21 Score=238.10 Aligned_cols=94 Identities=31% Similarity=0.452 Sum_probs=86.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +.+..|||||||||+||||+++||+||+||||||+||+.+|..|+++++++. +++||++|+ ||+++++.+|+|
T Consensus 459 vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIa---HRlsti~~aD~I 533 (567)
T COG1132 459 VG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIA---HRLSTIKNADRI 533 (567)
T ss_pred ec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEe---ccHhHHHhCCEE
Confidence 66 4556799999999999999999999999999999999999999999998755 556788888 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++|+++|+|+|+||++
T Consensus 534 iVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 534 IVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999999996
No 406
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.6e-20 Score=205.77 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=115.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc-------c-C--cccccceEEEeccCCCC-CCCCCHHHHHHH
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------K-K--QETFARISGYCEQNDIH-SPFVTIYESLLF 650 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~-------~-~--~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~ 650 (1140)
+++|+|||||||||||++|++...+. .|++..++.. . . .....-.+.|..|++.. .-..++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 99999999999999999999854321 2333332211 0 0 00111123343343211 00111111100
Q ss_pred HHHccCCC-CCCHHHHHHHHHHHHHHcCCccccccc---------ccC--------CCCCcCCHHHHHHHHHHHHHhhC-
Q 001146 651 SAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSL---------VGL--------PGVSGLSTEQRKRLTIAVELVAN- 711 (1140)
Q Consensus 651 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~g~--------~~~~~LSgGqrqRv~ia~al~~~- 711 (1140)
..+... ..+ ++.++++++.+|+....... +.. ..+..||||||||++||++++.+
T Consensus 101 --~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 --SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred --EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 001111 111 22356788888885332111 000 11357999999999999999875
Q ss_pred ---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 712 ---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 712 ---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
|++++|||||+|||+.++..+.+.|++++++|.++|+++|++ ++.+.+|++++|.+.+
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 899999999999999999999999999887799999999995 5678999999998764
No 407
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.7e-20 Score=200.47 Aligned_cols=194 Identities=20% Similarity=0.309 Sum_probs=147.7
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.|..+-+.||+|.|+ +.++++++++|-|.--..+||+||||.||||||++|.|...| ..|+.+-
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RK-- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRK-- 646 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhc--
Confidence 455678889998886 456789999999999999999999999999999999998874 3565432
Q ss_pred cccCcccccceEEEeccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 618 YPKKQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 618 ~~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
+.|-++|+..|.. .+-..-|..|.|.-.. ..+.++ ....+-.+||...++|+- ++.||
T Consensus 647 ------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 647 ------NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred ------cceeeeechhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecC
Confidence 2344678887753 2333346666554221 122221 346778899998888863 57899
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||-||++|.--++.|+||+|||||++||.++...+.+++++. .-.||+++||-+. +.+.-..+.++.+.|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQG 778 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCC
Confidence 99999999999999999999999999999999999999888765 4589999999763 445555667776554
No 408
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.82 E-value=2e-20 Score=231.88 Aligned_cols=94 Identities=27% Similarity=0.440 Sum_probs=84.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+. ...|||||||||+|||||+++|+||+||||||+||+.+|..+++++++.. +++|+|+|| ||.++++.||+|
T Consensus 479 vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiIt---Hrl~~i~~aD~I 553 (588)
T PRK11174 479 IGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVT---HQLEDLAQWDQI 553 (588)
T ss_pred cccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cChHHHHhCCEE
Confidence 5644 46699999999999999999999999999999999999999999998754 456677777 778999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 554 ivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 554 WVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEeCCeEeecCCHHHHHh
Confidence 9999999999999999985
No 409
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=2.3e-19 Score=177.23 Aligned_cols=206 Identities=19% Similarity=0.323 Sum_probs=151.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++..++.|+|+.. .+++-|+|++++.|.-+.++|.||||||||||+|+|..--+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~~------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEecccC------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 468999999999742 26899999999999999999999999999999999965422 3788888875
Q ss_pred c-Cc-------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 001146 620 K-KQ-------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 685 (1140)
Q Consensus 620 ~-~~-------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 685 (1140)
. .. ..+.+..+.-. +-.+....++.+ +.|+.. ..+. +|+ +++++.++++--..
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~-----g~dp-~Rr---e~LI~iLDIdl~WR-- 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVG-----GDDP-ERR---EKLIDILDIDLRWR-- 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhcc-----CCCh-hHh---hhhhhheeccceEE--
Confidence 3 11 01222222222 122223455544 444421 2222 332 56677776642221
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceE
Q 001146 686 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 686 ~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
.+.+|-||||||.|++.|++.=++|+|||-|--||..++..+++.+++-.+ +|.|||..||-.+ -+.....++
T Consensus 145 -----mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl 218 (291)
T KOG2355|consen 145 -----MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHL 218 (291)
T ss_pred -----EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhE
Confidence 245999999999999999999999999999999999999999999998775 4899999999776 467778999
Q ss_pred EEEecCCEEEEECCC
Q 001146 765 FLMKRGGQEIYVGPL 779 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~ 779 (1140)
+.++ +|+++-.-+.
T Consensus 219 ~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 219 VYIK-SGKLVDNLKY 232 (291)
T ss_pred EEec-CCeeeecccc
Confidence 9998 5888875543
No 410
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.81 E-value=4.2e-21 Score=205.59 Aligned_cols=209 Identities=27% Similarity=0.514 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 001146 867 IQFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 945 (1140)
Q Consensus 867 ~q~~~l~~R~~~~~~R~~~~~-~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 945 (1140)
+|++.+++|+++..+|||... ..+++..++.++++|.+|.+++++ .++. ++.|.+++.+.+.++....+......
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNS---QDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccc---cccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 899999999999999999998732 2233 56777777777666555555545567
Q ss_pred hhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001146 946 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1025 (1140)
Q Consensus 946 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1140)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++++++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999877 77777777888888889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhh
Q 001146 1026 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQF 1081 (1140)
Q Consensus 1026 ~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~nef 1081 (1140)
+++...+..+.+++..++++++|.++|.+++|+|++|+.|+||++|+.|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
No 411
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.9e-20 Score=211.83 Aligned_cols=94 Identities=32% Similarity=0.458 Sum_probs=87.6
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +..++|||||+|||++||||+++++++++||||++||.+||..|++.+.++++ ++|++++| ||+...+.+|+|
T Consensus 450 ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~it---Hrl~~~~~~D~I 524 (559)
T COG4988 450 IG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVIT---HRLEDAADADRI 524 (559)
T ss_pred hc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEE---cChHHHhcCCEE
Confidence 44 46688999999999999999999999999999999999999999999999774 67888888 999999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++|+++++|+|+++.+
T Consensus 525 ~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 525 VVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEecCCceeccCCHHHHhh
Confidence 9999999999999999974
No 412
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.4e-20 Score=204.87 Aligned_cols=199 Identities=24% Similarity=0.280 Sum_probs=134.5
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..|..+|.+..| +.+.+|++-++++..|.-++|+||||+||||||++|+. |.| .+.+
T Consensus 79 ~Di~~~~fdLa~-------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~ 135 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFH 135 (582)
T ss_pred cceeeeeeeeee-------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccC
Confidence 456777777666 34678999999999999999999999999999999985 111 1222
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
..++ .+ --+++........-|.++.+...- +.+... ++++..++++..+|..+-.... ..+.||||-
T Consensus 136 veqE-~~--g~~t~~~~~~l~~D~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGW 203 (582)
T KOG0062|consen 136 VEQE-VR--GDDTEALQSVLESDTERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGW 203 (582)
T ss_pred chhh-ee--ccchHHHhhhhhccHHHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcch
Confidence 2111 11 012221111112223333332210 001111 3334445588888887543322 246799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 777 (1140)
|-|+++||||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++||-+ .+-..|..|+-+++ -++- |.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~~-~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLEN-LKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHhh-hhhhhhcC
Confidence 99999999999999999999999999999999999998765 489999999954 56678888888874 3443 445
Q ss_pred C
Q 001146 778 P 778 (1140)
Q Consensus 778 ~ 778 (1140)
.
T Consensus 279 N 279 (582)
T KOG0062|consen 279 N 279 (582)
T ss_pred c
Confidence 3
No 413
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=1e-19 Score=187.26 Aligned_cols=94 Identities=28% Similarity=0.375 Sum_probs=83.1
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
+..+|||||||||||||||+.+|++|+||||||+||+....+|++.|.++.+.++-|.++ |.|-..-+..++|+|+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~-IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLF-ISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEE-EeCcHHHHHHHhhheeeee
Confidence 456799999999999999999999999999999999999999999999977665555554 4556667788899999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++|.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999985
No 414
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=1.3e-19 Score=202.09 Aligned_cols=99 Identities=29% Similarity=0.439 Sum_probs=90.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..++++|||||||++||+||+.+|+||||||||||||+.++..+.+.++++++.+++||+++.|++. ++...||+|++
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~i 209 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVII 209 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEE
Confidence 34578999999999999999999999999999999999999999999999998766689999977555 88888999999
Q ss_pred ecCCeEEEecCcchHHHHHH
Q 001146 84 LSDGQIVYQGPRELVLEFFA 103 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~~F~ 103 (1140)
|++|+++++|+.+++...+.
T Consensus 210 l~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 210 LNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred EeCCEEEEeCCHHHHHHhhc
Confidence 99999999999999887654
No 415
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.8e-19 Score=182.49 Aligned_cols=93 Identities=26% Similarity=0.396 Sum_probs=87.1
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
...|||||+|||+|||||+.+|+|++-||||++||+.++.+||+.|+++....|.|+|+.+||=- -.-+.||+|+=|.+
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~ 223 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKA 223 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999654 67789999999999
Q ss_pred CeEEEecCcchHHH
Q 001146 87 GQIVYQGPRELVLE 100 (1140)
Q Consensus 87 G~vvy~G~~~el~~ 100 (1140)
|+++|.||.+|+-+
T Consensus 224 G~ivfDg~~~el~~ 237 (258)
T COG3638 224 GRIVFDGPASELTD 237 (258)
T ss_pred CcEEEeCChhhhhH
Confidence 99999999999765
No 416
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.78 E-value=3.1e-19 Score=224.73 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=83.3
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|.++.+.+++. +.|+|+|| ||.++++.+|+|
T Consensus 582 ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiIt---Hr~~~i~~~D~I 654 (686)
T TIGR03797 582 ISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIA---HRLSTIRNADRI 654 (686)
T ss_pred ccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEe---cChHHHHcCCEE
Confidence 454 35679999999999999999999999999999999999999999999864 35667777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 655 ivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 655 YVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999984
No 417
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.78 E-value=4.4e-19 Score=188.85 Aligned_cols=94 Identities=30% Similarity=0.406 Sum_probs=87.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
..+..||||||||+-|||||+.+|+||+||||||.||-....+|++.+++++++++.|||+++|-+. -..+.+|++++|
T Consensus 134 r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~l 212 (258)
T COG1120 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILL 212 (258)
T ss_pred CcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 3467899999999999999999999999999999999999999999999999888999999988555 788999999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++.+|+++|.+
T Consensus 213 k~G~i~a~G~p~evl 227 (258)
T COG1120 213 KDGKIVAQGTPEEVL 227 (258)
T ss_pred ECCeEEeecCcchhc
Confidence 999999999999887
No 418
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=4.4e-19 Score=223.65 Aligned_cols=94 Identities=27% Similarity=0.510 Sum_probs=85.0
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ....||||||||++|||||+++|+||+||||||+||+.+|..+++.+++.. .++|+++|| ||+++++.+|+|
T Consensus 595 i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiIt---Hrl~~~~~~D~i 669 (694)
T TIGR03375 595 IGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVT---HRTSLLDLVDRI 669 (694)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cCHHHHHhCCEE
Confidence 454 456799999999999999999999999999999999999999999998754 456777777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++|+|+|+|+++
T Consensus 670 ivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 670 IVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999985
No 419
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.77 E-value=4.3e-19 Score=224.54 Aligned_cols=92 Identities=26% Similarity=0.390 Sum_probs=83.7
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|.++.+.+++ .+.|+|++| ||.++++.+|+|
T Consensus 609 i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~Iiit---Hrl~~i~~~D~I 681 (710)
T TIGR03796 609 LAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVA---HRLSTIRDCDEI 681 (710)
T ss_pred ecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEe---cCHHHHHhCCEE
Confidence 453 4577999999999999999999999999999999999999999999975 356677777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 682 ivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 682 IVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEeCCEEEEecCHHHHHH
Confidence 9999999999999999985
No 420
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.2e-19 Score=199.09 Aligned_cols=94 Identities=26% Similarity=0.426 Sum_probs=83.4
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
|| +.+++||||||||++|||+|.+|.++++|||||.|||..+|.+|++.+.+.+. ++|.+++| |++.-.+.||+|
T Consensus 468 lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vT---HrL~~le~~drI 542 (573)
T COG4987 468 LG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVT---HRLRGLERMDRI 542 (573)
T ss_pred hc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEe---cccccHhhcCEE
Confidence 44 45677999999999999999999999999999999999999999999987553 44455566 777888999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
+||++|+++|+|+|+++++
T Consensus 543 ivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 543 IVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEECCeeeecCCHHhhhc
Confidence 9999999999999999985
No 421
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.76 E-value=1.1e-18 Score=191.69 Aligned_cols=171 Identities=27% Similarity=0.329 Sum_probs=122.7
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---ccc---------c------eEEEeccCCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFA---------R------ISGYCEQNDI 637 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~---------~------~~~~v~q~~~ 637 (1140)
..+||++++|+||||-||||-+|+|+|...|. -|+ .++.|-.+. .+| + .+..=+|---
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN--LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 35799999999999999999999999976642 121 112111000 000 0 0111122111
Q ss_pred CCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 638 HSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 638 ~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
+.| .-||.|-|.-. +.+...+++++.++|.+..|+.+ +.|||||-||++||.+++++.++
T Consensus 172 ~iPk~~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 172 LIPKVVKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHHHhcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCE
Confidence 111 12566655321 11124688999999999988764 57999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+++|||||-||...+....+.++++++.+++||++.||+. -+--+.|-|.++.
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~Y 287 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILY 287 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEe
Confidence 9999999999999999999999999988999999999975 2334567777776
No 422
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.76 E-value=7.3e-19 Score=216.25 Aligned_cols=94 Identities=30% Similarity=0.480 Sum_probs=83.5
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.++..+.+.+++.. .++|++++| |+.++++.+|+|
T Consensus 469 vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiit---Hr~~~~~~~d~i 543 (574)
T PRK11160 469 LGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMIT---HRLTGLEQFDRI 543 (574)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cChhHHHhCCEE
Confidence 454 456799999999999999999999999999999999999999999998854 345556666 777889999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999985
No 423
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.76 E-value=6.2e-19 Score=222.86 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=83.5
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|..+++.|++. .++|+|+|| ||.++++.+|+|
T Consensus 605 i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~Iiit---Hr~~~~~~~D~i 678 (708)
T TIGR01193 605 LSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVA---HRLSVAKQSDKI 678 (708)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEe---cchHHHHcCCEE
Confidence 443 45679999999999999999999999999999999999999999999873 345666777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 679 ~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999985
No 424
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.76 E-value=6.5e-18 Score=174.52 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHh----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 694 LSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|+|+|+++|+++ ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998777899999999964 5678999999986
Q ss_pred CC
Q 001146 770 GG 771 (1140)
Q Consensus 770 gg 771 (1140)
.+
T Consensus 173 ~~ 174 (178)
T cd03239 173 VH 174 (178)
T ss_pred eC
Confidence 33
No 425
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=7.5e-18 Score=179.35 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=66.6
Q ss_pred CCcCCHHHHHHHHHHHHH----hhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-C-CEEEEEecCCCHHHHHhhc--
Q 001146 691 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G-RTVVCTIHQPSIDIFEAFD-- 762 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al----~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g-~tvi~~~H~~~~~~~~~~d-- 762 (1140)
+..||||||||+.++++| +.+|+++++||||+|||+.++..+.+.|++++++ | .|+|++||++. +..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 357999999999877554 5899999999999999999999999999998765 5 58999999875 4556665
Q ss_pred eEEEEecCCE
Q 001146 763 ELFLMKRGGQ 772 (1140)
Q Consensus 763 ~v~~l~~gg~ 772 (1140)
++++|.+ |+
T Consensus 203 ~v~~l~~-g~ 211 (213)
T cd03277 203 TVLCVYN-GP 211 (213)
T ss_pred EEEEEec-Cc
Confidence 7888875 44
No 426
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=7e-19 Score=221.34 Aligned_cols=92 Identities=26% Similarity=0.412 Sum_probs=80.1
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.+|..+.+ .. ...++|.++|| ||.++++.+|+|
T Consensus 611 ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiIt---Hrl~~i~~aD~I 683 (711)
T TIGR00958 611 VGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIA---HRLSTVERADQI 683 (711)
T ss_pred ccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEe---ccHHHHHhCCEE
Confidence 453 456799999999999999999999999999999999999988888 32 22345666677 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 684 ivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 684 LVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEECCEEEEeeCHHHHHh
Confidence 9999999999999999985
No 427
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.76 E-value=1.8e-18 Score=183.30 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=107.7
Q ss_pred eeCceEEEeCce-EEEEeCCCCCChHHHHHHHh--------cCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCC
Q 001146 570 LNGVSGAFRPGV-LTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 640 (1140)
Q Consensus 570 L~~vs~~i~~G~-~~al~G~sGaGKSTLl~~l~--------g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~ 640 (1140)
..++|+++.+|+ +++|+|||||||||||++|+ |...+. .. ...++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~--------------~~~~~~~~~~~~--- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AE--------------GSSLPVFENIFA--- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--cc--------------cccCcCccEEEE---
Confidence 568999999995 89999999999999999997 321110 00 001223333210
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
.++..+..+. +...+|+||||++.|+++ +.+|+++++|||
T Consensus 78 ----------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp 117 (200)
T cd03280 78 ----------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDEL 117 (200)
T ss_pred ----------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCC
Confidence 0111111111 124599999999999988 489999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 721 TSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 721 tsgLD~~~~~~v~-~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
++|||+.....+. ..++++.+.|.|+|++||+. ++.+.+|+++.|.+ |++.++++
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~~~~ 173 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEFDPE 173 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEEecC
Confidence 9999999999886 46777777799999999973 67899999999986 79988753
No 428
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.76 E-value=1.1e-18 Score=216.21 Aligned_cols=94 Identities=27% Similarity=0.426 Sum_probs=84.5
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+. .+.|||||||||+|||||+++|+||+|||||||||+.++..+.+.+++.. .++|.|++| |+.++.+.||+|
T Consensus 474 ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~Vt---Hr~~~~~~~D~I 548 (582)
T PRK11176 474 IGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIA---HRLSTIEKADEI 548 (582)
T ss_pred eCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEE
Confidence 5543 46699999999999999999999999999999999999999999998753 455667777 888999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+++++
T Consensus 549 i~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 549 LVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEECCEEEEeCCHHHHHh
Confidence 9999999999999999985
No 429
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.75 E-value=1.7e-18 Score=196.63 Aligned_cols=94 Identities=23% Similarity=0.334 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+++|+||+|||||||||+.+...+.+.|+++.++.+.|||++.|+ ...+-+.+|+|++|
T Consensus 136 ~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl 214 (343)
T TIGR02314 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVI 214 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999876557788776664 34666889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998875
No 430
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=1.7e-18 Score=214.76 Aligned_cols=94 Identities=28% Similarity=0.337 Sum_probs=84.2
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ....|||||||||+|||||+++|+||+||||||+||..++..+.+.+++.. .++|+|++| ||.++.+.+|+|
T Consensus 470 i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivt---Hr~~~l~~~D~i 544 (592)
T PRK10790 470 LGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIA---HRLSTIVEADTI 544 (592)
T ss_pred ccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEE
Confidence 443 446699999999999999999999999999999999999999999998854 356677777 778999999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+|+++
T Consensus 545 i~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 545 LVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999999984
No 431
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.75 E-value=2.4e-18 Score=191.50 Aligned_cols=172 Identities=21% Similarity=0.349 Sum_probs=128.3
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
....++..++|.|+||--+.|.||||||||+|+++|.|.-+ ...|...+ | .+..+-|+||.|..- .-|.
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP--vy~g~L~~---P-----~~~~mFYIPQRPYms-~gtl 561 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP--VYNGLLSI---P-----RPNNIFYIPQRPYMS-GGTL 561 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc--ccCCeeec---C-----CCcceEeccCCCccC-cCcc
Confidence 34568899999999999999999999999999999999764 11232221 1 124489999998765 5688
Q ss_pred HHHHHHHHH---ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC----CcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 645 YESLLFSAW---LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV----SGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 645 ~e~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~----~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
||.+.|.-. ++ ..+..+ +..+.+++.+.|++...+-.|-.-+ .-||||||||+.+||.+-++|+.-+|
T Consensus 562 RDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL 636 (728)
T KOG0064|consen 562 RDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL 636 (728)
T ss_pred cceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh
Confidence 887765311 00 012222 2356677777777666554443211 24999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCH
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 755 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 755 (1140)
||.||+..+..+..+.+..++ .|.+.|-++|+|+.
T Consensus 637 DEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred hhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 999999999988888877754 49999999999974
No 432
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.1e-18 Score=184.01 Aligned_cols=95 Identities=23% Similarity=0.347 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
.....||||||||+|||.+|+.+|+||+|||||||||..+...+++.++++...++.|+|+..| .-..+...+|++++|
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl 212 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVL 212 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999987765666666544 444666669999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|++.++.+
T Consensus 213 ~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 213 DDGKILADGDPAEIFN 228 (235)
T ss_pred ECCEEeecCCHHHHhh
Confidence 9999999999877764
No 433
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.75 E-value=2.9e-18 Score=167.06 Aligned_cols=94 Identities=23% Similarity=0.380 Sum_probs=87.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
....+||||||||+|+||.|+++-+||+||||-|+||+.-..+....+.+++.+++.|+++-.|||. +..+.+|+++++
T Consensus 125 RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl 203 (231)
T COG3840 125 RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFL 203 (231)
T ss_pred hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEE
Confidence 3457899999999999999999999999999999999999999999999999888889998878776 899999999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|||.++|+.++..
T Consensus 204 ~~Gri~~~g~~~~~~ 218 (231)
T COG3840 204 DNGRIAAQGSTQELL 218 (231)
T ss_pred eCCEEEeeccHHHHh
Confidence 999999999999876
No 434
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=3.7e-18 Score=174.83 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=85.6
Q ss_pred CCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 3 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 3 G~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
++-+...||||.|||+|+||||..||.|||+||||||||+-++..+.+.++++-+.-+.|+++- .|.-.+++..+|+++
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceEE
Confidence 3456788999999999999999999999999999999999999888888887766666666664 457779999999999
Q ss_pred EecCCeEEEecCcchHHH
Q 001146 83 LLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~ 100 (1140)
+|.+|+|+.+||.+|+.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999984
No 435
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.6e-18 Score=184.15 Aligned_cols=96 Identities=22% Similarity=0.338 Sum_probs=84.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+..+||||+||||.||.||..+|++|+-||||||||.....+|++.|+++.++.++++++ |.|--.-+.+.+|+|+|
T Consensus 148 ~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiil-ITHDl~vva~~aDri~V 226 (316)
T COG0444 148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL-ITHDLGVVAEIADRVAV 226 (316)
T ss_pred hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcceEEE
Confidence 34567899999999999999999999999999999999999999999999988766666655 44455568899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|..|++||.|+.+++..
T Consensus 227 MYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 227 MYAGRIVEEGPVEEIFK 243 (316)
T ss_pred EECcEEEEeCCHHHHhc
Confidence 99999999999998864
No 436
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.74 E-value=8.3e-18 Score=182.42 Aligned_cols=184 Identities=26% Similarity=0.307 Sum_probs=134.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc------CceEEEEEEEcCcccCcccccceEEEeccCC-C
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT------GGYITGNITISGYPKKQETFARISGYCEQND-I 637 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~------~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~ 637 (1140)
....+|+|+|++++||++++|+|+|||||||+|++|.|... +.+.+|.|.+--.. ..+.+|-+. .
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep 465 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEP 465 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccccc
Confidence 45679999999999999999999999999999999999432 22446666542211 223444432 1
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEE
Q 001146 638 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 717 (1140)
Q Consensus 638 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illl 717 (1140)
-+..-|+.|++.- ...+. ....+++..+|+.+..-.. ...++||.|||.|..||.++...|.+++.
T Consensus 466 ~f~~~tilehl~s-----~tGD~------~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 466 EFGEVTILEHLRS-----KTGDL------NAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccCchhHHHHHhh-----ccCch------hHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 2224466665531 11111 1235788888887643222 12467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHh-hceEEEEecCC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA-FDELFLMKRGG 771 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 771 (1140)
||--+.||..++..+.+-+.+++++ |.|.+++||+|+. +-.+ -|+++++.-|+
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~ 586 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGK 586 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccc
Confidence 9999999999999999999999854 9999999999852 3333 48888887543
No 437
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=5.2e-18 Score=190.03 Aligned_cols=111 Identities=24% Similarity=0.357 Sum_probs=92.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.+ .++||+++.|.+ ..+.+.+|+|++|
T Consensus 140 ~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l 217 (288)
T PRK13643 140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLL 217 (288)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 44578999999999999999999999999999999999999999999988664 577888776644 4677899999999
Q ss_pred cCCeEEEecCcchHHH---HHHhCCCCCCCCCChhH
Q 001146 85 SDGQIVYQGPRELVLE---FFASMGFRCPKRKGVAD 117 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~---~F~~~G~~~p~~~n~ad 117 (1140)
++|+++++|+++++.. .+...|+.+|.....++
T Consensus 218 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (288)
T PRK13643 218 EKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFAD 253 (288)
T ss_pred ECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHH
Confidence 9999999999998753 34556777666544443
No 438
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.73 E-value=5.6e-18 Score=192.49 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=83.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+.+|+||++||||||||..+...+++.|+++.++.++|+++..|.. ..+.+.+|+|+||
T Consensus 157 ~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm 235 (330)
T PRK09473 157 MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVM 235 (330)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEE
Confidence 356789999999999999999999999999999999999999999999987765577777655533 3555789999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++|.|+++++..
T Consensus 236 ~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 236 YAGRTMEYGNARDVFY 251 (330)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999864
No 439
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.73 E-value=4.8e-18 Score=208.24 Aligned_cols=92 Identities=26% Similarity=0.387 Sum_probs=80.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.||||||||++|||||+++|+||+|||||||||+.++..+.+.+++... .++|+++.. |+.++.+.+|+|++|+
T Consensus 451 ~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~it--h~~~~~~~~d~i~~l~ 527 (544)
T TIGR01842 451 GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVIT--HRPSLLGCVDKILVLQ 527 (544)
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEe--CCHHHHHhCCEEEEEE
Confidence 4577999999999999999999999999999999999999999999987543 445555544 4456889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+++++
T Consensus 528 ~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 528 DGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEeeCCHHHHhh
Confidence 999999999999864
No 440
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=8.1e-18 Score=188.39 Aligned_cols=96 Identities=26% Similarity=0.342 Sum_probs=85.2
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++||+++.|.. ..+.+.+|+|++
T Consensus 139 ~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~ 217 (287)
T PRK13637 139 DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIV 217 (287)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 4557889999999999999999999999999999999999999999999988765578888876654 367788999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+.+++.+
T Consensus 218 l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 218 MNKGKCELQGTPREVFK 234 (287)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999988753
No 441
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=5.2e-18 Score=177.10 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=74.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
.+..+|||||||||||||||+.+|+|++.||||.+||+.++..|++.+++++++.|+|+|+.. |...+-..+|+++.|
T Consensus 138 ~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VT--Hd~~lA~~~dr~i~l 215 (226)
T COG1136 138 KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVT--HDPELAKYADRVIEL 215 (226)
T ss_pred CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEc--CCHHHHHhCCEEEEE
Confidence 346689999999999999999999999999999999999999999999998887776666543 666788899999999
Q ss_pred cCCeE
Q 001146 85 SDGQI 89 (1140)
Q Consensus 85 ~~G~v 89 (1140)
.+|++
T Consensus 216 ~dG~~ 220 (226)
T COG1136 216 KDGKI 220 (226)
T ss_pred eCCee
Confidence 99993
No 442
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=8.1e-18 Score=190.39 Aligned_cols=105 Identities=22% Similarity=0.388 Sum_probs=85.8
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..++..+.+.++++.. +++||+++.|.+ ..+.+.+|+|++|
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~-~~~~~~adri~vl 249 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTM-EHVLEVADEVIVM 249 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999988654 566776655533 2567899999999
Q ss_pred cCCeEEEecCcchHHH---HHHhCCCCCCC
Q 001146 85 SDGQIVYQGPRELVLE---FFASMGFRCPK 111 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~---~F~~~G~~~p~ 111 (1140)
++|++++.|+++++.. .++..|...|.
T Consensus 250 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 250 DKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred ECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999998753 23344444433
No 443
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=7.2e-18 Score=191.52 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=83.3
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.++.+.|++++.| ....+.+.+|+|+||
T Consensus 149 ~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTH-dl~~~~~~adri~vm 227 (326)
T PRK11022 149 VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH-DLALVAEAAHKIIVM 227 (326)
T ss_pred CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEE
Confidence 3567899999999999999999999999999999999999999999999987656777776555 333566889999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
.+|++++.|+++++.+
T Consensus 228 ~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 228 YAGQVVETGKAHDIFR 243 (326)
T ss_pred ECCEEEEECCHHHHhh
Confidence 9999999999998864
No 444
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=6.2e-18 Score=193.77 Aligned_cols=96 Identities=24% Similarity=0.307 Sum_probs=86.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+++|+||+|||||||||..+...+.+.++++.+..++|+|++.|+ ..+..+++|+|++
T Consensus 129 ~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~l~D~i~v 207 (356)
T PRK11650 129 DRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD-QVEAMTLADRVVV 207 (356)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998776567888887664 4589999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 208 l~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 208 MNGGVAEQIGTPVEVYE 224 (356)
T ss_pred EeCCEEEEECCHHHHHh
Confidence 99999999999998853
No 445
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.73 E-value=5.4e-18 Score=213.62 Aligned_cols=94 Identities=30% Similarity=0.435 Sum_probs=83.2
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.||||||||++|||||+++|+||+|||||||||+.++..+.+.+++.. .+.|.+++| |+.++++.+|+|
T Consensus 587 i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it---H~~~~~~~~d~i 661 (694)
T TIGR01846 587 VGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIA---HRLSTVRACDRI 661 (694)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEe---CChHHHHhCCEE
Confidence 443 357799999999999999999999999999999999999999999998853 344555666 677899999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+++++
T Consensus 662 i~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 662 IVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999985
No 446
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=5.8e-18 Score=184.65 Aligned_cols=94 Identities=27% Similarity=0.296 Sum_probs=82.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.+++++++.++||+++.|.+. .+.+.+|+|++|
T Consensus 132 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l 210 (235)
T cd03261 132 LYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL 210 (235)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence 4557899999999999999999999999999999999999999999999876545777777666443 677789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988765
No 447
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.73 E-value=1.1e-17 Score=171.74 Aligned_cols=96 Identities=26% Similarity=0.316 Sum_probs=88.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+.++|||||+|||-|||||..+|+||++|||-||||+-+..++++.++++-++-++|||.-. |--.+.++++|+|+|
T Consensus 130 ~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-HDidEA~kLadri~v 208 (309)
T COG1125 130 DRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEALKLADRIAV 208 (309)
T ss_pred hcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-cCHHHHHhhhceEEE
Confidence 4467899999999999999999999999999999999999999999999988777788888754 488899999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++.+|++++++.
T Consensus 209 m~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 209 MDAGEIVQYDTPDEILA 225 (309)
T ss_pred ecCCeEEEeCCHHHHHh
Confidence 99999999999999985
No 448
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1e-17 Score=187.91 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=84.3
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++++...++|||++.|... .+.+.+|+|++|
T Consensus 141 ~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l 219 (290)
T PRK13634 141 RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVM 219 (290)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 4568899999999999999999999999999999999999999999999877655788887766544 677899999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++++|+.+++.
T Consensus 220 ~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 220 HKGTVFLQGTPREIF 234 (290)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988874
No 449
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.72 E-value=7.3e-18 Score=208.73 Aligned_cols=94 Identities=23% Similarity=0.392 Sum_probs=82.8
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+ ..+.|||||||||+|||||+++|+||+||||||+||+.++..+.+.+++.. .++|.++|| |+.++.+.+|+|
T Consensus 465 i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiit---Hr~~~~~~~D~i 539 (588)
T PRK13657 465 VGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIA---HRLSTVRNADRI 539 (588)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEE---ecHHHHHhCCEE
Confidence 443 356699999999999999999999999999999999999999999998753 345566666 677899999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|+++++|+|+++++
T Consensus 540 i~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 540 LVFDNGRVVESGSFDELVA 558 (588)
T ss_pred EEEECCEEEEeCCHHHHHH
Confidence 9999999999999999984
No 450
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=9.9e-18 Score=183.76 Aligned_cols=94 Identities=27% Similarity=0.405 Sum_probs=83.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+++|+||+|||||+|||..+...+.+.|+++++..++|||++.|++. .+.+.+|++++|
T Consensus 140 ~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 218 (241)
T cd03256 140 QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGL 218 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877655778888766544 677799999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988764
No 451
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.1e-17 Score=177.58 Aligned_cols=90 Identities=42% Similarity=0.760 Sum_probs=82.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++|+++++||+..++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 45667899999999999999999999999999999999999999999999876655778888888888899999999999
Q ss_pred ecCCeEEEec
Q 001146 84 LSDGQIVYQG 93 (1140)
Q Consensus 84 L~~G~vvy~G 93 (1140)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999999876
No 452
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.72 E-value=8.7e-18 Score=207.00 Aligned_cols=91 Identities=22% Similarity=0.339 Sum_probs=80.0
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....||||||||++|||||+++|+||+|||||||||..++..+.+.|++.. .++|.+++| |+.++++.+|+|++|+
T Consensus 468 ~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~is---H~~~~~~~~d~i~~l~ 543 (585)
T TIGR01192 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIA---HRLSTVRNADLVLFLD 543 (585)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEE---cChHHHHcCCEEEEEE
Confidence 456799999999999999999999999999999999999999999998753 344444455 5667889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+++++
T Consensus 544 ~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 544 QGRLIEKGSFQELIQ 558 (585)
T ss_pred CCEEEEECCHHHHHH
Confidence 999999999999985
No 453
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.72 E-value=1.3e-17 Score=175.58 Aligned_cols=135 Identities=12% Similarity=0.100 Sum_probs=98.9
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .++.|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 45778887765 79999999999999999999988431 11233333221 25567778899999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCH
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 726 (1140)
++.++.. ....+. +++.++++.+++ .+|+++++|||++|+|+
T Consensus 79 ~l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9976431 112222 345666665542 68999999999999999
Q ss_pred HHHHHHH-HHHHHHhhCCCEEEEEecCCC
Q 001146 727 RAAAIVM-RTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 727 ~~~~~v~-~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
.....+. ..++++.+.|.|+|++||+++
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9988765 467887777999999999975
No 454
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.72 E-value=1.1e-17 Score=191.60 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=86.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.++.++|+|+..|.+ .+..+++|+|++
T Consensus 129 ~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~v 207 (353)
T TIGR03265 129 RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVV 207 (353)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEE
Confidence 4567789999999999999999999999999999999999999999999987766678888876755 488999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 208 l~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 208 MNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998864
No 455
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.72 E-value=1.1e-17 Score=205.99 Aligned_cols=91 Identities=22% Similarity=0.301 Sum_probs=80.1
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....||||||||++|||||+++|+||+|||||||||+.++..+.+.|++.. .++|.+++| |+.++++.+|+|++|+
T Consensus 448 ~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~it---H~~~~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISA---HRLSALTEASEILVMQ 523 (569)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchhHHHcCCEEEEEe
Confidence 356799999999999999999999999999999999999999999998753 344444555 5567899999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+++++
T Consensus 524 ~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 524 HGHIAQRGNHDQLAQ 538 (569)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999999974
No 456
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.71 E-value=1e-17 Score=207.47 Aligned_cols=94 Identities=27% Similarity=0.422 Sum_probs=82.9
Q ss_pred CCCCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 2 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 2 VG~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
||+. .+.|||||||||+|||+++++|+||+||||||+||..++..+.+.|++.. .++|.|++| |+.+..+.+|+|
T Consensus 463 i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiit---H~~~~~~~~D~i 537 (571)
T TIGR02203 463 IGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIA---HRLSTIEKADRI 537 (571)
T ss_pred ecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---hhhHHHHhCCEE
Confidence 4543 56799999999999999999999999999999999999999999998754 345556666 667889999999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|++++.|+|+++++
T Consensus 538 i~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 538 VVMDDGRIVERGTHNELLA 556 (571)
T ss_pred EEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999974
No 457
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.71 E-value=1.2e-17 Score=188.38 Aligned_cols=95 Identities=25% Similarity=0.402 Sum_probs=85.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..+++||||||||++||+||+.+|++|+|||||+|||+.+...+.+.++++. ..|+||+++.|+. .++-+.+|+|++
T Consensus 133 ~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~till~sH~l-~e~~~~~d~i~i 210 (306)
T PRK13537 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFM-EEAERLCDRLCV 210 (306)
T ss_pred cCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEE
Confidence 34578899999999999999999999999999999999999999999999875 4588888887744 488899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+.+++..
T Consensus 211 l~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 211 IEEGRKIAEGAPHALIE 227 (306)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999999874
No 458
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.2e-17 Score=190.89 Aligned_cols=95 Identities=22% Similarity=0.344 Sum_probs=85.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+++|+||+|||||||||+.+..++.+.|+++.+..++|+++..|. ..++.+++|+|++
T Consensus 131 ~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~e~~~laD~i~v 209 (351)
T PRK11432 131 DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD-QSEAFAVSDTVIV 209 (351)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEE
Confidence 445688999999999999999999999999999999999999999999998776557788777664 4588999999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 210 m~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 210 MNKGKIMQIGSPQELY 225 (351)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999875
No 459
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.5e-17 Score=188.68 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=82.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.++.++|+++..| ....+-+.+|+|++
T Consensus 149 ~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH-dl~~~~~~adrv~v 227 (327)
T PRK11308 149 DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH-DLSVVEHIADEVMV 227 (327)
T ss_pred cCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999877655666665444 33345568999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++|.|+.+++..
T Consensus 228 m~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 228 MYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999999998864
No 460
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.3e-17 Score=165.46 Aligned_cols=94 Identities=24% Similarity=0.361 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+++|-|+||||+|||||+.+|+|++|||||||||-.+...+.+.+++ .+..|++||.+-| --.++-.++|+++++
T Consensus 129 rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q-~k~egr~viFSSH-~m~EvealCDrvivl 206 (245)
T COG4555 129 RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ-LKNEGRAVIFSSH-IMQEVEALCDRVIVL 206 (245)
T ss_pred HHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHH-hhcCCcEEEEecc-cHHHHHHhhheEEEE
Confidence 34678999999999999999999999999999999999999999998887 4456888888855 566777799999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++|+.|+.+++.+
T Consensus 207 h~Gevv~~gs~~~l~~ 222 (245)
T COG4555 207 HKGEVVLEGSIEALDA 222 (245)
T ss_pred ecCcEEEcCCHHHHHH
Confidence 9999999999998864
No 461
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.71 E-value=1.2e-17 Score=190.59 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=84.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++....++|||++.|. ..+..+.+|+|++|
T Consensus 125 ~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd-~~ea~~~~drI~vl 203 (363)
T TIGR01186 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRIVIM 203 (363)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998765557787776664 44688999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|++++++.
T Consensus 204 ~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 204 KAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCEEEeeCCHHHHHh
Confidence 9999999999998864
No 462
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.3e-17 Score=190.87 Aligned_cols=95 Identities=25% Similarity=0.318 Sum_probs=84.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.|+++.+..++|||++.|++. .+.+.+|+|++|
T Consensus 136 ~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l 214 (343)
T PRK11153 136 RYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVI 214 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 3467899999999999999999999999999999999999999999999877655788888766544 677889999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++..
T Consensus 215 ~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 215 DAGRLVEQGTVSEVFS 230 (343)
T ss_pred ECCEEEEEcCHHHHHh
Confidence 9999999999988853
No 463
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.71 E-value=1.4e-17 Score=190.88 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=85.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhc-CCEEEEEecCCChhHHhhccceE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN-SGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~-~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.++. ++|++++.| ...++.+++|+|+
T Consensus 132 ~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTH-d~~ea~~l~dri~ 210 (362)
T TIGR03258 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH-DQDDALTLADKAG 210 (362)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC-CHHHHHHhCCEEE
Confidence 45678899999999999999999999999999999999999999999999877654 677777666 4457899999999
Q ss_pred EecCCeEEEecCcchHHH
Q 001146 83 LLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~ 100 (1140)
+|++|+++++|+++++..
T Consensus 211 vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 211 IMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999998863
No 464
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.6e-17 Score=184.46 Aligned_cols=94 Identities=26% Similarity=0.270 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+++|+||+|||||+|||..+...+.+.++++++..++||+++.|++. .+.+.+|++++|
T Consensus 156 ~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l 234 (269)
T cd03294 156 KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIM 234 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 3457899999999999999999999999999999999999999999999877655778888766544 677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++++|+++++.
T Consensus 235 ~~G~i~~~g~~~~~~ 249 (269)
T cd03294 235 KDGRLVQVGTPEEIL 249 (269)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998875
No 465
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.71 E-value=1.8e-17 Score=189.77 Aligned_cols=96 Identities=26% Similarity=0.316 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+.+.|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.++.++|+++..| ...++.+.+|+|++
T Consensus 131 ~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTH-d~~ea~~~~Dri~v 209 (353)
T PRK10851 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH-DQEEAMEVADRVVV 209 (353)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999877655777776655 55688999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 210 l~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 210 MSQGNIEQAGTPDQVWR 226 (353)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998853
No 466
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.71 E-value=1.7e-17 Score=182.15 Aligned_cols=93 Identities=26% Similarity=0.354 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.++.++|++++.|++. .+.+.+|++++|
T Consensus 141 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l 219 (243)
T TIGR02315 141 QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGL 219 (243)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 4567899999999999999999999999999999999999999999999876655778877766544 567889999999
Q ss_pred cCCeEEEecCcchH
Q 001146 85 SDGQIVYQGPRELV 98 (1140)
Q Consensus 85 ~~G~vvy~G~~~el 98 (1140)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998875
No 467
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.6e-17 Score=181.64 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=83.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++|||++.|++ ..+.+.+|+|++|
T Consensus 132 ~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l 210 (239)
T cd03296 132 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVM 210 (239)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 345789999999999999999999999999999999999999999999987765577888876754 4677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~~~~~~~~ 225 (239)
T cd03296 211 NKGRIEQVGTPDEVY 225 (239)
T ss_pred ECCeEEEecCHHHHh
Confidence 999999999988775
No 468
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.71 E-value=1.8e-17 Score=180.06 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=83.7
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||+|+++|+||+|||||+|||..+...+.+.++++++..++||+++-|++. ++.+.+|++++
T Consensus 120 ~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 198 (230)
T TIGR02770 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAV 198 (230)
T ss_pred hCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 34567799999999999999999999999999999999999999999999876545778887766544 67788999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 199 l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 199 MDDGRIVERGTVKEIF 214 (230)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998876
No 469
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.1e-17 Score=188.36 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=81.9
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
....+|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.++.+.|+|++.| ....+.+.+|+|++|
T Consensus 154 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH-dl~~v~~~~dri~vm 232 (330)
T PRK15093 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH-DLQMLSQWADKINVL 232 (330)
T ss_pred CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC-CHHHHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999977655666666544 334555789999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
.+|++++.|+.+++..
T Consensus 233 ~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 233 YCGQTVETAPSKELVT 248 (330)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
No 470
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.71 E-value=1.9e-17 Score=190.33 Aligned_cols=96 Identities=26% Similarity=0.315 Sum_probs=85.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.+.++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.+..++|+|+..| ...++..++|+|++
T Consensus 139 ~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTH-d~~ea~~laDri~v 217 (375)
T PRK09452 139 QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH-DQEEALTMSDRIVV 217 (375)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999887766778777656 45578999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 218 l~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 218 MRDGRIEQDGTPREIYE 234 (375)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999988753
No 471
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.5e-17 Score=166.72 Aligned_cols=90 Identities=24% Similarity=0.338 Sum_probs=77.9
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
..+|||||+||++|||||.-+|+||+|||||||||+-|..+|=+.+.++. ..-||||-.| --...-+-.|....+..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTH-nmqQAaRvSD~taFf~~ 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTH-NMQQAARVSDYTAFFYL 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeC-CHHHHHHHhHhhhhhcc
Confidence 45799999999999999999999999999999999999988888887754 3456666545 55578888999999999
Q ss_pred CeEEEecCcchHH
Q 001146 87 GQIVYQGPRELVL 99 (1140)
Q Consensus 87 G~vvy~G~~~el~ 99 (1140)
|++||+|+.+++-
T Consensus 224 G~LvE~g~T~~iF 236 (253)
T COG1117 224 GELVEFGPTDKIF 236 (253)
T ss_pred cEEEEEcCHHhhh
Confidence 9999999998874
No 472
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.71 E-value=2.3e-17 Score=187.34 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.++.++|+++..| ....+.+.+|+|+|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTH-dl~~~~~~~dri~v 234 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH-DLAVVKHISDRVLV 234 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45567899999999999999999999999999999999999999999999876655666666544 44466678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|.+|++++.|+.+++..
T Consensus 235 l~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 235 MYLGHAVELGTYDEVYH 251 (331)
T ss_pred EECCEEEEEcCHHHHHc
Confidence 99999999999988763
No 473
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.70 E-value=2.5e-17 Score=185.96 Aligned_cols=95 Identities=26% Similarity=0.396 Sum_probs=85.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..++.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.++++.+ .|+||+++.|+ ..++.+.+|+|++
T Consensus 119 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~-~~~~~~~~d~v~~ 196 (302)
T TIGR01188 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHY-MEEADKLCDRIAI 196 (302)
T ss_pred CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998764 57888887664 4578889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 197 l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 197 IDHGRIIAEGTPEELKR 213 (302)
T ss_pred EECCEEEEECCHHHHHH
Confidence 99999999999999875
No 474
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.1e-16 Score=178.15 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHHhh----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 693 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.||||||||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|++. +.+.+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999998864 789999999975 568999999998
Q ss_pred cCC
Q 001146 769 RGG 771 (1140)
Q Consensus 769 ~gg 771 (1140)
+++
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 475
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.70 E-value=3e-17 Score=177.84 Aligned_cols=89 Identities=36% Similarity=0.681 Sum_probs=81.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||+|+++|+||+|||||+|||..+...+.+.+++..+ .+.|++++.|++..++.+.+|++++
T Consensus 138 ~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~ 216 (226)
T cd03234 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILL 216 (226)
T ss_pred cccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEE
Confidence 456788999999999999999999999999999999999999999999998654 5789999889888899999999999
Q ss_pred ecCCeEEEec
Q 001146 84 LSDGQIVYQG 93 (1140)
Q Consensus 84 L~~G~vvy~G 93 (1140)
|++|+++++|
T Consensus 217 l~~G~i~~~g 226 (226)
T cd03234 217 LSSGEIVYSG 226 (226)
T ss_pred EeCCEEEecC
Confidence 9999999987
No 476
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.4e-17 Score=190.28 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=84.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...++|||||||||+|||||+++|+||+|||||||||..+...+.+.|+++.++.++|+|++.|++ .++.+.+|+|++|
T Consensus 129 ~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl 207 (369)
T PRK11000 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVL 207 (369)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 456789999999999999999999999999999999999999999999987765577877776644 4788999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++..
T Consensus 208 ~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 208 DAGRVAQVGKPLELYH 223 (369)
T ss_pred ECCEEEEEcCHHHHHh
Confidence 9999999999988753
No 477
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.70 E-value=2.3e-17 Score=179.04 Aligned_cols=89 Identities=26% Similarity=0.371 Sum_probs=78.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
.++||||||||++|||+|+.+|++|+|||||+|||..+...+.+.|++.++ . +|||++.|++ ..+.+.+|+|++|++
T Consensus 139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~~~~~d~i~~l~~ 215 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNM-QQAARVADRTAFLLN 215 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccH-HHHHHhCCEEEEEeC
Confidence 478999999999999999999999999999999999999999999998764 4 6777766644 367788999999999
Q ss_pred CeEEEecCcchH
Q 001146 87 GQIVYQGPRELV 98 (1140)
Q Consensus 87 G~vvy~G~~~el 98 (1140)
|++++.|+++++
T Consensus 216 G~i~~~g~~~~~ 227 (227)
T cd03260 216 GRLVEFGPTEQI 227 (227)
T ss_pred CEEEEecCcccC
Confidence 999999998763
No 478
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.70 E-value=2.7e-17 Score=187.15 Aligned_cols=96 Identities=26% Similarity=0.274 Sum_probs=85.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+++|+||+|||||||||..+...+.+.|+++.+..++|+|++.|.+ .++.+.+|+|++
T Consensus 95 ~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~v 173 (325)
T TIGR01187 95 DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAI 173 (325)
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987766678888776644 478899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 174 l~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 174 MRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998863
No 479
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.6e-17 Score=180.35 Aligned_cols=95 Identities=27% Similarity=0.352 Sum_probs=84.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+++|++|+|||||+|||..+...+.+.|+++++..++|||++.|++. .+.+.+|+|++
T Consensus 130 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~ 208 (242)
T cd03295 130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAI 208 (242)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999877655778888767554 67888999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 209 l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 209 MKNGEIVQVGTPDEIL 224 (242)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988775
No 480
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.70 E-value=2.6e-17 Score=179.80 Aligned_cols=93 Identities=19% Similarity=0.292 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|++|+|||||+|||..+...+.+.+++.++ .++|+|++.|++. .+.+.+|+|++|
T Consensus 139 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l 216 (236)
T cd03219 139 RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVL 216 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998765 5777777666443 666889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 217 ~~G~i~~~~~~~~~~ 231 (236)
T cd03219 217 DQGRVIAEGTPDEVR 231 (236)
T ss_pred eCCEEEeecCHHHhc
Confidence 999999999988775
No 481
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.6e-17 Score=176.74 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=77.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+++|+||+|||||+|||..+...+.+.+++++++.++||+++.|.+ ..+.+.+|+|++|
T Consensus 126 ~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l 204 (213)
T cd03259 126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVM 204 (213)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEE
Confidence 345679999999999999999999999999999999999999999999987765577887776644 4677889999999
Q ss_pred cCCeEEEec
Q 001146 85 SDGQIVYQG 93 (1140)
Q Consensus 85 ~~G~vvy~G 93 (1140)
++|++++.|
T Consensus 205 ~~G~i~~~g 213 (213)
T cd03259 205 NEGRIVQVG 213 (213)
T ss_pred ECCEEEecC
Confidence 999999876
No 482
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=2.8e-17 Score=189.43 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+++|+||+|||||||||..+...+.+.++++.++.+.|+|++.|. ..++..++|+|++
T Consensus 144 ~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~laDri~v 222 (377)
T PRK11607 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD-QEEAMTMAGRIAI 222 (377)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEE
Confidence 456678999999999999999999999999999999999999999999988776667788777664 4478999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 223 l~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 223 MNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EeCCEEEEEcCHHHHHh
Confidence 99999999999998863
No 483
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=3.7e-17 Score=182.87 Aligned_cols=96 Identities=25% Similarity=0.304 Sum_probs=83.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.++++++..++||+++.|+.. .+-+.+|++++
T Consensus 136 ~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~ 214 (283)
T PRK13636 136 DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFV 214 (283)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999877654777777655333 45678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 215 l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 215 MKEGRVILQGNPKEVFA 231 (283)
T ss_pred EECCEEEEeCCHHHHhc
Confidence 99999999999998764
No 484
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=3.3e-17 Score=183.59 Aligned_cols=95 Identities=20% Similarity=0.302 Sum_probs=83.7
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.++++.+..++||+++.|+.. .+.+.+|+|++|
T Consensus 141 ~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l 219 (286)
T PRK13646 141 QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 4568899999999999999999999999999999999999999999999876656778777666443 677889999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+++++.+
T Consensus 220 ~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 220 KEGSIVSQTSPKELFK 235 (286)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999888653
No 485
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=3.4e-17 Score=175.33 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=112.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEE-EeccCCCCCCCCCHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG-YCEQNDIHSPFVTIY 645 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~v~q~~~~~~~lTv~ 645 (1140)
+.+.+|++++.++|++++|.||||+|||||++.++-. .+..++| |||.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe-----
Confidence 4579999999999999999999999999999999621 0011122 4444321111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH--hhCCcEeEEeCC---
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 720 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al--~~~p~illlDEP--- 720 (1140)
.++++++.+++.+.. .+++|.|+++++.+++++ +.+|++++||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 023445555554322 246999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 721 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 721 tsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+++|++..+.+ |++.+.+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence 999999887533 3344443 48999999996 478899999999985 78887765
No 486
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.70 E-value=2.8e-17 Score=177.80 Aligned_cols=93 Identities=19% Similarity=0.334 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|++|+|||||+|||..+...+.+.|++.++ .++|++++.|.+ ..+.+.+|+|++|
T Consensus 128 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 205 (222)
T cd03224 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVL 205 (222)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEe
Confidence 45678999999999999999999999999999999999999999999998765 577877776644 4677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+.+++.
T Consensus 206 ~~G~i~~~~~~~~~~ 220 (222)
T cd03224 206 ERGRVVLEGTAAELL 220 (222)
T ss_pred eCCeEEEeCCHHHHh
Confidence 999999999988764
No 487
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=3.2e-17 Score=178.63 Aligned_cols=94 Identities=27% Similarity=0.326 Sum_probs=83.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|++|+|||||+|||..+...+.+.++++++..++||+++.|++ ..+.+.+|++++|
T Consensus 136 ~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l 214 (233)
T cd03258 136 AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVM 214 (233)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 346789999999999999999999999999999999999999999999987665577888876754 3667889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (233)
T cd03258 215 EKGEVVEEGTVEEVF 229 (233)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
No 488
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.6e-17 Score=180.34 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=82.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.+..++||+++.|++. .+. .+|+|++
T Consensus 137 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~ 214 (269)
T PRK13648 137 DYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIV 214 (269)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEE
Confidence 44567899999999999999999999999999999999999999999999876545788888877665 444 5999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 215 l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 215 MNKGTVYKEGTPTEIF 230 (269)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999998875
No 489
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=4e-17 Score=172.84 Aligned_cols=94 Identities=29% Similarity=0.388 Sum_probs=83.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..+..|||||+|||-|||||+.+|++|+|||||+|+|+.++..+.+.|+++.++ |+||++. ||-...+.+.||+|+.
T Consensus 134 ~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~v-tHDL~~v~~~~D~vi~ 211 (254)
T COG1121 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMV-THDLGLVMAYFDRVIC 211 (254)
T ss_pred CCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCcHHhHhhCCEEEE
Confidence 3456779999999999999999999999999999999999999999999997765 8888875 5577789999999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|+ ++++..|++++...
T Consensus 212 Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 212 LN-RHLIASGPPEEVLT 227 (254)
T ss_pred Ec-CeeEeccChhhccC
Confidence 96 68889999998763
No 490
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.69 E-value=3.1e-17 Score=189.54 Aligned_cols=94 Identities=26% Similarity=0.445 Sum_probs=84.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++++ .++||+++.| ....+.+.+|+|++
T Consensus 134 ~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsH-dl~~~~~~adrii~ 211 (402)
T PRK09536 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIH-DLDLAARYCDELVL 211 (402)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEC-CHHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999999875 5778888766 44477799999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|++++++
T Consensus 212 l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 212 LADGRVRAAGPPADVL 227 (402)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999999865
No 491
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=5.5e-17 Score=180.57 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=80.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+++|++|+|||||+|||+.+...+.+.+++++. .++||+++.|. ...+.+.+|+|++|
T Consensus 134 ~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~-~~~~~~~~d~i~~l 211 (274)
T PRK13647 134 KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHD-VDLAAEWADQVIVL 211 (274)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998765 46777776554 33556889999999
Q ss_pred cCCeEEEecCcchH
Q 001146 85 SDGQIVYQGPRELV 98 (1140)
Q Consensus 85 ~~G~vvy~G~~~el 98 (1140)
++|+++++|+++++
T Consensus 212 ~~G~i~~~g~~~~~ 225 (274)
T PRK13647 212 KEGRVLAEGDKSLL 225 (274)
T ss_pred ECCEEEEECCHHHh
Confidence 99999999998654
No 492
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=3.6e-17 Score=176.48 Aligned_cols=91 Identities=24% Similarity=0.257 Sum_probs=80.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+++|++|+|||||+|||..+...+.+.++++.+..++||+++.|++. ++.+.+|++++|
T Consensus 127 ~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 205 (220)
T cd03293 127 AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVL 205 (220)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 3457899999999999999999999999999999999999999999999876555778887766544 677889999999
Q ss_pred c--CCeEEEecCcc
Q 001146 85 S--DGQIVYQGPRE 96 (1140)
Q Consensus 85 ~--~G~vvy~G~~~ 96 (1140)
+ +|+++++++.+
T Consensus 206 ~~~~G~i~~~~~~~ 219 (220)
T cd03293 206 SARPGRIVAEVEVD 219 (220)
T ss_pred ECCCCEEEEEEEec
Confidence 9 79999999865
No 493
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.69 E-value=3.9e-17 Score=180.63 Aligned_cols=94 Identities=24% Similarity=0.346 Sum_probs=81.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.+++.++..+.|||++-| ....+.+.+|+|++|
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH-~~~~~~~~~d~i~~l 225 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH-DLAVARLLAHRLLVM 225 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC-CHHHHHHhcCEEEEE
Confidence 3467899999999999999999999999999999999999999999999876544667766545 444566789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 226 ~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 226 KQGRVVESGLTDQVL 240 (258)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998875
No 494
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=5.9e-17 Score=180.84 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=82.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+++.++++++..++||+++.|++. .+ ..+|+|++|
T Consensus 136 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l 213 (279)
T PRK13650 136 REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVM 213 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 3567899999999999999999999999999999999999999999999877655788888777654 33 679999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+.+++.
T Consensus 214 ~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 214 KNGQVESTSTPRELF 228 (279)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988765
No 495
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.69 E-value=3e-17 Score=178.04 Aligned_cols=94 Identities=23% Similarity=0.205 Sum_probs=82.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||+|+.+|+||+|||||+|||..+...+.+.+++.+++.++||+++.|++. .+.+.+|+|++|
T Consensus 110 ~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 188 (230)
T TIGR01184 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVML 188 (230)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877655778777766443 677889999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+..+++
T Consensus 189 ~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 189 TNGPAANIGQILEVP 203 (230)
T ss_pred eCCcEecccCceecc
Confidence 999999999766553
No 496
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.2e-17 Score=185.05 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=78.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHH-hhccceEE
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY-DLFDDIIL 83 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~-~~fD~I~v 83 (1140)
+....|||||||||+|||||+++|+||+|||||||||+.+...+.+.++++.+ + +|++++. |+.+.+ +.+|+|++
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~-~Tii~iT--H~l~~i~~~~Driiv 296 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-K-YSIIIVT--HSMAQAQRISDETVF 296 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C-CEEEEEe--CCHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999988653 3 5544443 555555 45999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999986
No 497
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.69 E-value=3.9e-17 Score=184.56 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=84.7
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..++.||||||||++|||||+.+|++|+|||||+|||..+...+.+.++++++ .++||+++.|++ .++.+.+|+|++
T Consensus 130 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~ 207 (303)
T TIGR01288 130 DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCV 207 (303)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998764 577888876644 477788999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 208 l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 208 LESGRKIAEGRPHALID 224 (303)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
No 498
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.69 E-value=4.3e-17 Score=179.77 Aligned_cols=94 Identities=23% Similarity=0.267 Sum_probs=83.0
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++++..++||+++.|++. .+.+.+|++++|
T Consensus 136 ~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l 214 (254)
T PRK10418 136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVM 214 (254)
T ss_pred cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877655778777766444 566789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988875
No 499
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.69 E-value=3.7e-17 Score=181.38 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=82.9
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.+..++|||++.|++. .+.+.+|++++|
T Consensus 146 ~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l 224 (265)
T TIGR02769 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVM 224 (265)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEE
Confidence 4567899999999999999999999999999999999999999999999877555777777666433 566789999999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|++++.|+++++.
T Consensus 225 ~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 225 DKGQIVEECDVAQLL 239 (265)
T ss_pred eCCEEEEECCHHHHc
Confidence 999999999999886
No 500
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=4.7e-17 Score=175.59 Aligned_cols=93 Identities=23% Similarity=0.379 Sum_probs=81.6
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|++|+|||||+|||..+...+.+.++++++..++|++++.| ....+.+.+|+|++|
T Consensus 127 ~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH-~~~~~~~~~d~i~~l 205 (220)
T cd03265 127 RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH-YMEEAEQLCDRVAII 205 (220)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999877644777777655 444777889999999
Q ss_pred cCCeEEEecCcchH
Q 001146 85 SDGQIVYQGPRELV 98 (1140)
Q Consensus 85 ~~G~vvy~G~~~el 98 (1140)
.+|++++.|+++++
T Consensus 206 ~~G~i~~~~~~~~~ 219 (220)
T cd03265 206 DHGRIIAEGTPEEL 219 (220)
T ss_pred eCCEEEEeCChHHc
Confidence 99999999987764
Done!