Query 001146
Match_columns 1140
No_of_seqs 630 out of 4502
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.1E-62 3.6E-67 651.6 42.1 218 538-780 1073-1300(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1.7E-56 5.9E-61 591.0 34.1 217 539-780 1028-1254(1284)
3 3tui_C Methionine import ATP-b 100.0 8.5E-44 2.9E-48 402.1 27.8 219 541-780 24-249 (366)
4 3tif_A Uncharacterized ABC tra 100.0 1.9E-43 6.6E-48 381.8 27.9 220 542-780 2-230 (235)
5 3rlf_A Maltose/maltodextrin im 100.0 1.6E-43 5.6E-48 402.5 27.7 215 541-780 3-219 (381)
6 3bk7_A ABC transporter ATP-bin 100.0 3.6E-43 1.2E-47 427.5 31.0 202 541-781 357-560 (607)
7 3gfo_A Cobalt import ATP-bindi 100.0 1.8E-43 6.3E-48 388.9 25.6 217 541-781 7-230 (275)
8 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-43 4.5E-48 400.7 24.9 215 541-780 4-224 (359)
9 2pcj_A ABC transporter, lipopr 100.0 4.6E-43 1.6E-47 376.3 26.6 213 541-779 4-223 (224)
10 2olj_A Amino acid ABC transpor 100.0 6.1E-43 2.1E-47 382.6 28.0 214 541-779 24-243 (263)
11 3ozx_A RNAse L inhibitor; ATP 100.0 4.2E-43 1.4E-47 421.6 28.2 216 541-793 269-486 (538)
12 1yqt_A RNAse L inhibitor; ATP- 100.0 9.5E-43 3.3E-47 420.2 30.4 202 541-781 287-490 (538)
13 1b0u_A Histidine permease; ABC 100.0 8.5E-43 2.9E-47 382.8 26.9 213 542-779 7-237 (262)
14 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-42 5E-47 378.5 26.4 214 541-779 15-230 (256)
15 1z47_A CYSA, putative ABC-tran 100.0 1.2E-42 4E-47 393.5 25.8 217 540-780 13-231 (355)
16 1g6h_A High-affinity branched- 100.0 1E-42 3.5E-47 381.7 24.4 218 541-780 7-238 (257)
17 2yyz_A Sugar ABC transporter, 100.0 1.5E-42 5.3E-47 393.7 25.3 214 542-780 4-219 (359)
18 2it1_A 362AA long hypothetical 100.0 1.9E-42 6.5E-47 393.5 25.8 214 542-780 4-219 (362)
19 1g29_1 MALK, maltose transport 100.0 3.8E-42 1.3E-46 393.5 27.8 215 541-780 3-225 (372)
20 3j16_B RLI1P; ribosome recycli 100.0 2E-42 6.9E-47 419.7 26.1 201 568-793 361-568 (608)
21 1ji0_A ABC transporter; ATP bi 100.0 3.9E-42 1.3E-46 373.1 24.2 214 541-780 6-224 (240)
22 4g1u_C Hemin import ATP-bindin 100.0 2.8E-42 9.6E-47 378.8 22.9 214 541-781 11-234 (266)
23 1v43_A Sugar-binding transport 100.0 3.1E-42 1.1E-46 393.1 24.1 214 542-780 12-227 (372)
24 1oxx_K GLCV, glucose, ABC tran 100.0 2.4E-42 8.3E-47 392.8 22.6 214 542-780 4-226 (353)
25 2iw3_A Elongation factor 3A; a 100.0 2.5E-42 8.4E-47 431.7 23.2 207 541-778 671-981 (986)
26 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-41 5.9E-46 423.4 30.4 195 569-779 337-635 (670)
27 3d31_A Sulfate/molybdate ABC t 100.0 8.2E-42 2.8E-46 386.7 21.6 210 542-780 2-213 (348)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 2.6E-41 8.8E-46 369.0 24.0 219 542-780 4-229 (250)
29 3nh6_A ATP-binding cassette SU 100.0 2.3E-41 7.7E-46 376.8 23.9 213 539-780 51-273 (306)
30 2onk_A Molybdate/tungstate ABC 100.0 2.1E-41 7.4E-46 366.0 22.6 208 542-779 2-211 (240)
31 2yz2_A Putative ABC transporte 100.0 2.8E-41 9.7E-46 371.9 23.3 217 542-779 3-222 (266)
32 2zu0_C Probable ATP-dependent 100.0 1.1E-40 3.9E-45 366.9 26.5 221 541-780 20-250 (267)
33 2ihy_A ABC transporter, ATP-bi 100.0 2.1E-41 7.2E-46 374.1 20.7 218 540-780 20-248 (279)
34 2nq2_C Hypothetical ABC transp 100.0 5.5E-40 1.9E-44 358.2 26.0 208 541-780 4-213 (253)
35 3pih_A Uvrabc system protein A 100.0 8.4E-40 2.9E-44 409.4 29.0 197 569-780 599-898 (916)
36 2ff7_A Alpha-hemolysin translo 100.0 2.4E-40 8.3E-45 360.0 21.0 213 539-779 5-227 (247)
37 2qi9_C Vitamin B12 import ATP- 100.0 2.7E-40 9.1E-45 359.1 21.1 204 542-780 5-218 (249)
38 1sgw_A Putative ABC transporte 100.0 1.5E-40 5.2E-45 352.2 18.6 199 540-768 9-207 (214)
39 2ixe_A Antigen peptide transpo 100.0 2E-40 6.9E-45 365.4 19.3 215 541-780 16-241 (271)
40 2r6f_A Excinuclease ABC subuni 100.0 4.3E-39 1.5E-43 398.5 27.7 195 569-779 639-937 (972)
41 1mv5_A LMRA, multidrug resista 100.0 1.1E-39 3.7E-44 354.8 16.5 211 542-780 2-222 (243)
42 2vf7_A UVRA2, excinuclease ABC 100.0 1.4E-38 4.8E-43 395.3 28.0 106 667-779 708-822 (842)
43 2pjz_A Hypothetical protein ST 100.0 8E-39 2.7E-43 350.0 21.9 206 542-779 2-210 (263)
44 2ygr_A Uvrabc system protein A 100.0 2.2E-38 7.6E-43 393.7 27.4 196 569-780 657-956 (993)
45 2ghi_A Transport protein; mult 100.0 6E-39 2.1E-43 351.8 19.3 211 541-779 17-237 (260)
46 3gd7_A Fusion complex of cysti 100.0 7.3E-39 2.5E-43 367.6 16.3 213 539-780 17-238 (390)
47 2yl4_A ATP-binding cassette SU 100.0 1.2E-37 3.9E-42 383.2 25.5 219 539-781 338-567 (595)
48 2cbz_A Multidrug resistance-as 100.0 8.6E-38 3E-42 338.0 21.1 200 542-780 4-213 (237)
49 2pze_A Cystic fibrosis transme 100.0 8.8E-38 3E-42 336.4 20.5 200 541-779 6-213 (229)
50 3qf4_A ABC transporter, ATP-bi 100.0 2E-38 6.8E-43 388.2 17.0 216 538-781 338-563 (587)
51 4a82_A Cystic fibrosis transme 100.0 2.3E-38 7.9E-43 387.7 16.2 214 539-780 337-560 (578)
52 3b5x_A Lipid A export ATP-bind 100.0 1.5E-37 5E-42 381.3 22.7 215 539-780 339-563 (582)
53 3b60_A Lipid A export ATP-bind 100.0 1.6E-37 5.4E-42 381.0 22.9 215 539-780 339-563 (582)
54 3qf4_B Uncharacterized ABC tra 100.0 2.4E-38 8.1E-43 388.8 14.7 213 539-780 352-574 (598)
55 4f4c_A Multidrug resistance pr 100.0 4E-36 1.4E-40 397.9 22.6 217 538-781 412-638 (1321)
56 3g5u_A MCG1178, multidrug resi 100.0 9.4E-36 3.2E-40 393.5 20.7 216 538-780 384-609 (1284)
57 2bbs_A Cystic fibrosis transme 100.0 2.3E-35 7.7E-40 327.1 18.9 197 540-780 39-243 (290)
58 2iw3_A Elongation factor 3A; a 100.0 9.5E-30 3.2E-34 318.4 24.6 195 540-780 434-631 (986)
59 1yqt_A RNAse L inhibitor; ATP- 100.0 4.2E-31 1.4E-35 318.7 11.1 195 542-769 21-233 (538)
60 3bk7_A ABC transporter ATP-bin 100.0 3.5E-31 1.2E-35 322.2 10.4 181 568-769 106-303 (607)
61 3ux8_A Excinuclease ABC, A sub 100.0 5.8E-30 2E-34 319.4 14.0 206 567-781 31-295 (670)
62 3j16_B RLI1P; ribosome recycli 99.9 9.6E-29 3.3E-33 300.0 7.7 188 568-775 92-301 (608)
63 3ozx_A RNAse L inhibitor; ATP 99.9 1.8E-28 6E-33 294.7 9.8 172 576-769 21-212 (538)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.5E-28 2.2E-32 283.9 -7.3 197 570-792 128-350 (460)
65 4aby_A DNA repair protein RECN 99.9 1.5E-24 5E-29 256.4 17.3 203 569-777 50-381 (415)
66 3b85_A Phosphate starvation-in 99.9 1.8E-25 6.1E-30 235.9 -8.8 144 565-754 11-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 9.2E-22 3.2E-26 226.5 19.6 82 691-775 277-364 (365)
68 1e69_A Chromosome segregation 99.9 3.8E-22 1.3E-26 226.5 14.9 87 691-780 217-309 (322)
69 4gp7_A Metallophosphoesterase; 99.9 1.3E-22 4.5E-27 208.3 7.2 143 572-754 1-160 (171)
70 1tq4_A IIGP1, interferon-induc 99.8 4.3E-24 1.5E-28 246.6 -9.4 171 567-765 36-248 (413)
71 3nh6_A ATP-binding cassette SU 99.8 5E-21 1.7E-25 213.0 10.1 92 5-100 186-277 (306)
72 1znw_A Guanylate kinase, GMP k 99.8 2.4E-24 8.3E-29 228.8 -16.3 185 566-772 8-206 (207)
73 1ye8_A Protein THEP1, hypothet 99.8 1.4E-21 4.9E-26 201.2 4.0 150 582-776 2-160 (178)
74 3tui_C Methionine import ATP-b 99.8 7.4E-20 2.5E-24 206.8 9.9 95 4-99 158-252 (366)
75 3gfo_A Cobalt import ATP-bindi 99.8 9.2E-20 3.2E-24 200.3 10.3 96 4-100 138-233 (275)
76 3b9q_A Chloroplast SRP recepto 99.8 1E-20 3.4E-25 211.3 1.2 154 570-752 90-256 (302)
77 3tif_A Uncharacterized ABC tra 99.8 1.1E-19 3.9E-24 195.7 9.0 94 4-99 140-233 (235)
78 3sop_A Neuronal-specific septi 99.8 3.1E-21 1.1E-25 212.2 -4.0 147 582-753 4-150 (270)
79 2onk_A Molybdate/tungstate ABC 99.8 2.2E-19 7.4E-24 193.8 9.9 96 4-100 121-216 (240)
80 3qf4_A ABC transporter, ATP-bi 99.8 1.9E-19 6.6E-24 220.2 10.5 92 5-100 475-566 (587)
81 2v9p_A Replication protein E1; 99.8 6.6E-23 2.3E-27 227.1 -18.4 169 542-793 102-271 (305)
82 3fvq_A Fe(3+) IONS import ATP- 99.8 2.8E-19 9.7E-24 202.1 10.8 96 4-100 133-228 (359)
83 4g1u_C Hemin import ATP-bindin 99.8 2.5E-19 8.4E-24 196.4 9.9 95 4-99 136-236 (266)
84 2vf7_A UVRA2, excinuclease ABC 99.8 2.6E-18 8.8E-23 213.9 19.9 107 667-781 358-472 (842)
85 1b0u_A Histidine permease; ABC 99.8 3.8E-19 1.3E-23 194.8 9.7 95 4-100 148-242 (262)
86 1z6g_A Guanylate kinase; struc 99.8 6.6E-23 2.3E-27 219.2 -19.9 176 569-765 12-205 (218)
87 2olj_A Amino acid ABC transpor 99.8 4.5E-19 1.5E-23 193.7 10.1 95 4-100 154-248 (263)
88 1g6h_A High-affinity branched- 99.8 5.8E-19 2E-23 193.1 10.5 93 4-98 148-240 (257)
89 2ixe_A Antigen peptide transpo 99.8 4.9E-19 1.7E-23 194.8 9.9 94 5-100 152-245 (271)
90 3rlf_A Maltose/maltodextrin im 99.8 5.2E-19 1.8E-23 201.2 10.4 96 4-100 128-223 (381)
91 2pt7_A CAG-ALFA; ATPase, prote 99.8 6.1E-20 2.1E-24 207.9 2.5 130 569-770 160-290 (330)
92 2ff7_A Alpha-hemolysin translo 99.8 4.9E-19 1.7E-23 192.2 9.3 90 6-99 142-231 (247)
93 1ji0_A ABC transporter; ATP bi 99.8 5.2E-19 1.8E-23 191.4 9.4 94 4-99 134-227 (240)
94 2og2_A Putative signal recogni 99.8 4E-20 1.4E-24 209.8 0.4 153 571-752 148-313 (359)
95 2o5v_A DNA replication and rep 99.8 2.1E-18 7.2E-23 196.2 14.4 80 693-781 265-353 (359)
96 2pcj_A ABC transporter, lipopr 99.8 8.2E-19 2.8E-23 187.7 10.3 89 4-95 135-223 (224)
97 4a82_A Cystic fibrosis transme 99.8 4E-19 1.4E-23 217.4 9.0 92 5-100 473-564 (578)
98 3qf4_B Uncharacterized ABC tra 99.8 3.4E-19 1.2E-23 218.7 7.7 90 7-100 489-578 (598)
99 3b5x_A Lipid A export ATP-bind 99.8 7.5E-19 2.6E-23 215.4 10.1 91 6-100 477-567 (582)
100 1z47_A CYSA, putative ABC-tran 99.8 1.1E-18 3.8E-23 197.5 10.6 96 4-100 140-235 (355)
101 2yyz_A Sugar ABC transporter, 99.8 1.2E-18 4.1E-23 197.8 10.8 96 4-100 128-223 (359)
102 3b60_A Lipid A export ATP-bind 99.8 6.7E-19 2.3E-23 215.8 9.3 91 6-100 477-567 (582)
103 3d31_A Sulfate/molybdate ABC t 99.8 1.2E-18 4.1E-23 197.1 10.6 95 4-99 122-216 (348)
104 3qkt_A DNA double-strand break 99.8 6.1E-18 2.1E-22 193.3 16.5 77 691-769 246-328 (339)
105 2it1_A 362AA long hypothetical 99.8 1E-18 3.5E-23 198.5 9.9 96 4-100 128-223 (362)
106 1oxx_K GLCV, glucose, ABC tran 99.8 1.2E-18 4.2E-23 197.9 10.3 96 4-100 135-230 (353)
107 2yz2_A Putative ABC transporte 99.8 1.4E-18 4.8E-23 190.9 10.4 95 4-100 133-227 (266)
108 2ghi_A Transport protein; mult 99.8 9.4E-19 3.2E-23 191.4 8.9 91 6-100 152-242 (260)
109 2yl4_A ATP-binding cassette SU 99.7 9.2E-19 3.1E-23 215.1 9.7 91 6-100 480-570 (595)
110 1v43_A Sugar-binding transport 99.7 1.7E-18 5.7E-23 197.5 10.9 96 4-100 136-231 (372)
111 1g29_1 MALK, maltose transport 99.7 1.7E-18 5.9E-23 197.9 10.8 96 4-100 134-229 (372)
112 2nq2_C Hypothetical ABC transp 99.7 1.4E-18 4.8E-23 189.1 9.2 94 4-99 123-216 (253)
113 2dpy_A FLII, flagellum-specifi 99.7 4.4E-20 1.5E-24 216.2 -2.9 174 567-779 145-339 (438)
114 2ihy_A ABC transporter, ATP-bi 99.7 1.2E-18 4.1E-23 192.2 7.8 94 4-99 156-251 (279)
115 1vpl_A ABC transporter, ATP-bi 99.7 2.6E-18 8.7E-23 187.1 10.2 94 5-100 142-235 (256)
116 1mv5_A LMRA, multidrug resista 99.7 8.2E-19 2.8E-23 190.3 6.3 91 6-100 136-226 (243)
117 2cbz_A Multidrug resistance-as 99.7 1.5E-18 5.1E-23 187.3 6.9 92 5-100 123-217 (237)
118 2qi9_C Vitamin B12 import ATP- 99.7 2.7E-18 9.1E-23 186.2 8.2 94 4-99 121-221 (249)
119 2zu0_C Probable ATP-dependent 99.7 4.8E-18 1.6E-22 186.6 10.0 100 5-107 159-260 (267)
120 1cr0_A DNA primase/helicase; R 99.7 9.4E-19 3.2E-23 196.6 3.2 183 567-770 22-235 (296)
121 2pze_A Cystic fibrosis transme 99.7 3.1E-18 1E-22 183.9 6.9 89 7-99 128-217 (229)
122 2d2e_A SUFC protein; ABC-ATPas 99.7 3.5E-18 1.2E-22 186.1 7.2 91 5-97 138-230 (250)
123 3gd7_A Fusion complex of cysti 99.7 3.3E-18 1.1E-22 196.3 6.9 89 8-100 154-242 (390)
124 2pjz_A Hypothetical protein ST 99.7 7.4E-18 2.5E-22 184.0 8.1 91 5-100 124-215 (263)
125 3pih_A Uvrabc system protein A 99.7 1.6E-17 5.6E-22 208.4 9.0 162 595-781 383-557 (916)
126 2bbs_A Cystic fibrosis transme 99.7 1.6E-17 5.4E-22 184.0 6.6 90 7-100 157-247 (290)
127 3aez_A Pantothenate kinase; tr 99.7 4.2E-19 1.4E-23 199.1 -6.3 157 577-768 87-243 (312)
128 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 9.4E-17 3.2E-21 159.0 11.0 76 691-768 55-136 (148)
129 2r6f_A Excinuclease ABC subuni 99.7 2.1E-16 7.2E-21 196.4 16.5 134 640-781 450-597 (972)
130 1tf7_A KAIC; homohexamer, hexa 99.7 5.9E-17 2E-21 196.2 10.1 156 574-772 275-444 (525)
131 2o8b_B DNA mismatch repair pro 99.7 1.1E-17 3.6E-22 214.1 3.6 172 541-779 750-937 (1022)
132 3thx_A DNA mismatch repair pro 99.7 1.1E-16 3.7E-21 202.1 12.1 151 565-780 647-809 (934)
133 2jeo_A Uridine-cytidine kinase 99.7 2E-18 6.8E-23 188.2 -3.4 156 565-753 10-165 (245)
134 1tf7_A KAIC; homohexamer, hexa 99.7 2.9E-19 9.9E-24 216.4 -11.3 168 566-769 24-209 (525)
135 2ehv_A Hypothetical protein PH 99.7 1E-17 3.5E-22 183.2 0.4 169 570-769 19-207 (251)
136 2eyu_A Twitching motility prot 99.6 5.1E-17 1.8E-21 177.6 4.1 132 569-769 16-147 (261)
137 2obl_A ESCN; ATPase, hydrolase 99.6 1.5E-17 5.2E-22 188.9 -0.1 175 567-779 59-250 (347)
138 2ygr_A Uvrabc system protein A 99.6 7E-16 2.4E-20 192.5 13.2 135 639-781 466-614 (993)
139 3thx_B DNA mismatch repair pro 99.6 2.4E-16 8.3E-21 198.2 6.1 145 566-764 659-805 (918)
140 4a74_A DNA repair and recombin 99.6 8.5E-17 2.9E-21 173.5 1.2 152 575-770 20-200 (231)
141 2qnr_A Septin-2, protein NEDD5 99.6 1.9E-17 6.5E-22 185.4 -6.2 156 566-754 10-168 (301)
142 1rj9_A FTSY, signal recognitio 99.6 1.2E-16 4.2E-21 178.2 -0.1 149 579-754 101-259 (304)
143 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1.7E-15 5.9E-20 150.0 7.8 81 5-88 53-141 (148)
144 3asz_A Uridine kinase; cytidin 99.6 4.2E-18 1.4E-22 181.2 -11.9 145 577-753 3-161 (211)
145 1ewq_A DNA mismatch repair pro 99.6 4.6E-16 1.6E-20 193.1 2.9 133 566-761 565-704 (765)
146 1wb9_A DNA mismatch repair pro 99.6 1.1E-15 3.8E-20 190.8 5.2 157 566-778 594-752 (800)
147 1sgw_A Putative ABC transporte 99.5 1.6E-15 5.3E-20 160.3 4.5 83 4-89 128-210 (214)
148 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 5E-15 1.7E-19 170.3 7.9 83 6-91 276-364 (365)
149 1pzn_A RAD51, DNA repair and r 99.5 2.9E-16 9.8E-21 179.4 -3.7 164 570-778 120-309 (349)
150 2i3b_A HCR-ntpase, human cance 99.5 2E-16 6.8E-21 164.0 -4.8 160 580-780 1-172 (189)
151 3jvv_A Twitching mobility prot 99.5 3.9E-15 1.3E-19 169.5 5.1 127 576-769 119-245 (356)
152 3szr_A Interferon-induced GTP- 99.5 4.5E-16 1.5E-20 190.6 -4.5 166 574-779 42-232 (608)
153 1nlf_A Regulatory protein REPA 99.5 3.7E-14 1.2E-18 157.6 9.8 151 576-754 26-182 (279)
154 2w0m_A SSO2452; RECA, SSPF, un 99.5 3.9E-15 1.3E-19 160.7 1.5 166 568-769 10-191 (235)
155 2qag_C Septin-7; cell cycle, c 99.5 1.4E-15 5E-20 176.2 -4.7 164 541-754 11-178 (418)
156 1pui_A ENGB, probable GTP-bind 99.5 2E-15 6.9E-20 160.1 -3.8 177 542-745 4-202 (210)
157 3kta_B Chromosome segregation 99.4 1.1E-13 3.9E-18 140.6 8.4 76 6-85 61-140 (173)
158 3kta_B Chromosome segregation 99.4 2.6E-13 9E-18 137.9 10.7 75 691-768 62-140 (173)
159 2bdt_A BH3686; alpha-beta prot 99.4 1.3E-16 4.4E-21 166.6 -17.8 170 580-780 2-180 (189)
160 2o5v_A DNA replication and rep 99.4 2.5E-13 8.7E-18 154.4 6.8 87 3-98 258-354 (359)
161 4ad8_A DNA repair protein RECN 99.4 4.2E-13 1.4E-17 162.0 9.0 76 691-769 394-472 (517)
162 1s96_A Guanylate kinase, GMP k 99.4 1.8E-14 6E-19 153.2 -3.3 134 572-754 8-141 (219)
163 2qag_B Septin-6, protein NEDD5 99.4 3.2E-14 1.1E-18 163.8 -1.9 167 570-752 30-218 (427)
164 4aby_A DNA repair protein RECN 99.4 6.2E-13 2.1E-17 156.6 8.9 81 10-94 296-382 (415)
165 1zp6_A Hypothetical protein AT 99.4 3.3E-15 1.1E-19 156.1 -9.5 142 576-739 5-147 (191)
166 2cvh_A DNA repair and recombin 99.4 3.7E-12 1.3E-16 135.9 14.0 153 569-770 8-185 (220)
167 2ewv_A Twitching motility prot 99.3 3.3E-13 1.1E-17 155.2 2.6 131 569-768 127-257 (372)
168 1e69_A Chromosome segregation 99.3 2.8E-12 9.6E-17 145.2 9.5 90 6-99 216-312 (322)
169 2gza_A Type IV secretion syste 99.3 5.7E-13 2E-17 152.9 2.8 137 569-770 164-302 (361)
170 1lw7_A Transcriptional regulat 99.3 5.3E-15 1.8E-19 170.8 -14.6 167 569-768 157-342 (365)
171 1nij_A Hypothetical protein YJ 99.3 1.6E-15 5.5E-20 171.3 -19.7 156 581-754 5-190 (318)
172 2rcn_A Probable GTPase ENGC; Y 99.3 3E-12 1E-16 144.6 6.5 121 570-708 206-328 (358)
173 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.2E-12 4E-17 154.1 3.3 87 7-99 233-337 (460)
174 3auy_A DNA double-strand break 99.3 1.4E-11 4.6E-16 142.4 12.1 78 691-771 278-362 (371)
175 4ad8_A DNA repair protein RECN 99.2 6.4E-12 2.2E-16 151.7 8.8 78 7-88 394-474 (517)
176 2bbw_A Adenylate kinase 4, AK4 99.2 2.4E-14 8.1E-19 156.0 -11.5 144 579-742 26-199 (246)
177 1ye8_A Protein THEP1, hypothet 99.2 9.3E-12 3.2E-16 127.8 7.3 78 6-91 73-159 (178)
178 2f1r_A Molybdopterin-guanine d 99.2 7.1E-14 2.4E-18 142.2 -8.9 138 581-743 3-163 (171)
179 2yhs_A FTSY, cell division pro 99.2 9.8E-13 3.4E-17 153.1 -0.6 153 570-751 283-447 (503)
180 3qkt_A DNA double-strand break 99.2 1E-11 3.5E-16 141.6 7.5 77 6-85 245-327 (339)
181 1n0w_A DNA repair protein RAD5 99.2 1.4E-11 4.8E-16 133.6 7.5 152 575-770 19-209 (243)
182 2kjq_A DNAA-related protein; s 99.2 8.9E-12 3E-16 124.0 5.0 45 709-754 81-126 (149)
183 1htw_A HI0065; nucleotide-bind 99.2 6E-13 2.1E-17 133.5 -3.6 79 566-650 19-97 (158)
184 1udx_A The GTP-binding protein 99.2 1.3E-12 4.5E-17 151.3 -1.8 171 570-765 147-320 (416)
185 1w1w_A Structural maintenance 99.1 6.5E-11 2.2E-15 139.7 10.2 75 693-769 333-411 (430)
186 3ec2_A DNA replication protein 99.1 1.1E-11 3.8E-16 127.9 3.0 48 709-756 98-146 (180)
187 3e70_C DPA, signal recognition 99.1 5.4E-12 1.8E-16 142.0 0.6 143 577-752 126-278 (328)
188 2qm8_A GTPase/ATPase; G protei 99.1 3.1E-13 1E-17 153.5 -9.7 162 567-740 42-259 (337)
189 1odf_A YGR205W, hypothetical 3 99.1 3.1E-12 1.1E-16 141.7 -2.3 128 578-728 29-169 (290)
190 4gp7_A Metallophosphoesterase; 99.0 7.6E-11 2.6E-15 120.4 3.4 69 9-80 83-167 (171)
191 1w1w_A Structural maintenance 99.0 2.1E-10 7.2E-15 135.3 7.5 76 7-85 331-410 (430)
192 2oap_1 GSPE-2, type II secreti 99.0 8E-13 2.7E-17 157.6 -13.4 178 567-761 247-457 (511)
193 3auy_A DNA double-strand break 99.0 2.2E-10 7.7E-15 132.2 6.5 76 6-85 277-359 (371)
194 3lda_A DNA repair protein RAD5 99.0 2.1E-10 7.1E-15 132.4 6.1 151 575-770 173-363 (400)
195 3c8u_A Fructokinase; YP_612366 99.0 2.3E-12 7.9E-17 136.4 -9.5 148 577-763 19-168 (208)
196 1sxj_E Activator 1 40 kDa subu 99.0 4.1E-10 1.4E-14 129.4 7.4 163 583-791 39-203 (354)
197 2yv5_A YJEQ protein; hydrolase 99.0 2.2E-11 7.5E-16 136.2 -3.8 121 576-707 161-301 (302)
198 1p9r_A General secretion pathw 98.9 1.6E-12 5.5E-17 150.9 -14.5 133 567-716 156-314 (418)
199 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.9E-12 6.4E-17 148.5 -13.9 171 576-781 16-210 (392)
200 2v9p_A Replication protein E1; 98.9 2.7E-11 9.3E-16 134.1 -5.5 74 7-105 198-271 (305)
201 1lvg_A Guanylate kinase, GMP k 98.9 2.1E-13 7E-18 143.2 -22.7 56 704-768 116-172 (198)
202 1in4_A RUVB, holliday junction 98.8 5.1E-11 1.8E-15 135.6 -8.4 151 567-741 31-194 (334)
203 2x8a_A Nuclear valosin-contain 98.8 4.9E-12 1.7E-16 139.5 -17.0 128 567-722 33-164 (274)
204 3b85_A Phosphate starvation-in 98.8 1.3E-09 4.3E-14 114.6 1.1 51 13-70 108-158 (208)
205 1t9h_A YLOQ, probable GTPase E 98.7 5.1E-10 1.7E-14 124.2 -2.3 119 575-701 168-303 (307)
206 1sq5_A Pantothenate kinase; P- 98.7 2E-10 6.8E-15 129.0 -7.4 85 569-655 50-156 (308)
207 2dr3_A UPF0273 protein PH0284; 98.7 9.3E-08 3.2E-12 103.4 12.4 68 702-769 117-196 (247)
208 1vma_A Cell division protein F 98.7 9E-09 3.1E-13 114.5 4.4 113 572-739 96-211 (306)
209 2r6a_A DNAB helicase, replicat 98.6 8.2E-08 2.8E-12 113.7 12.2 177 569-770 192-399 (454)
210 1u0l_A Probable GTPase ENGC; p 98.6 4.3E-09 1.5E-13 117.7 0.6 102 575-685 164-288 (301)
211 3lnc_A Guanylate kinase, GMP k 98.6 6E-11 2.1E-15 127.7 -14.7 38 568-605 15-53 (231)
212 2zr9_A Protein RECA, recombina 98.6 8E-08 2.7E-12 109.2 9.2 78 700-778 126-237 (349)
213 1ls1_A Signal recognition part 98.6 7.2E-08 2.5E-12 107.1 8.6 118 571-739 91-209 (295)
214 2ius_A DNA translocase FTSK; n 98.5 1.6E-09 5.4E-14 127.9 -7.1 166 572-755 159-344 (512)
215 3thx_A DNA mismatch repair pro 98.5 6.5E-08 2.2E-12 122.4 6.7 94 4-99 716-812 (934)
216 1iy2_A ATP-dependent metallopr 98.5 1.5E-10 5E-15 128.4 -16.5 123 568-714 63-190 (278)
217 1oix_A RAS-related protein RAB 98.5 2.1E-08 7.2E-13 104.2 0.8 38 699-738 151-188 (191)
218 2px0_A Flagellar biosynthesis 98.5 1.4E-07 4.8E-12 104.7 6.9 142 578-777 103-248 (296)
219 1ixz_A ATP-dependent metallopr 98.5 2E-10 6.9E-15 125.5 -16.0 127 568-720 39-170 (254)
220 2pt7_A CAG-ALFA; ATPase, prote 98.4 5.8E-08 2E-12 109.6 3.3 68 12-89 225-292 (330)
221 3tr0_A Guanylate kinase, GMP k 98.4 1.1E-08 3.8E-13 107.4 -2.8 61 574-640 1-64 (205)
222 3euj_A Chromosome partition pr 98.4 2.8E-08 9.5E-13 116.5 -0.3 50 569-621 19-68 (483)
223 3k1j_A LON protease, ATP-depen 98.4 4.3E-09 1.5E-13 129.4 -8.1 158 565-738 45-227 (604)
224 1tq4_A IIGP1, interferon-induc 98.3 6E-08 2.1E-12 111.9 -0.3 72 10-81 155-247 (413)
225 1cr0_A DNA primase/helicase; R 98.2 1E-06 3.5E-11 98.3 7.4 81 8-89 128-237 (296)
226 2ce7_A Cell division protein F 98.2 1.6E-06 5.3E-11 102.1 8.6 59 696-754 93-165 (476)
227 2f9l_A RAB11B, member RAS onco 98.2 1E-06 3.5E-11 91.9 5.4 37 702-740 130-166 (199)
228 3hr8_A Protein RECA; alpha and 98.2 8.8E-07 3E-11 100.1 4.5 34 570-603 49-84 (356)
229 2xau_A PRE-mRNA-splicing facto 98.1 3.3E-06 1.1E-10 106.1 8.6 79 692-771 189-269 (773)
230 4eun_A Thermoresistant glucoki 98.1 2.2E-07 7.4E-12 97.3 -2.7 56 574-635 23-80 (200)
231 2qtf_A Protein HFLX, GTP-bindi 98.1 5.9E-06 2E-10 94.4 8.8 148 582-741 181-353 (364)
232 1z6g_A Guanylate kinase; struc 98.0 9.1E-08 3.1E-12 101.6 -6.4 68 8-86 121-193 (218)
233 1qhl_A Protein (cell division 98.0 1.7E-07 5.7E-12 99.4 -6.0 59 574-635 22-91 (227)
234 3thx_B DNA mismatch repair pro 97.9 5.9E-06 2E-10 104.3 6.5 82 7-91 733-816 (918)
235 3nwj_A ATSK2; P loop, shikimat 97.9 6.6E-07 2.2E-11 96.5 -2.0 52 541-604 17-72 (250)
236 4a1f_A DNAB helicase, replicat 97.9 9.6E-06 3.3E-10 91.0 6.7 128 569-751 35-164 (338)
237 2o8b_B DNA mismatch repair pro 97.9 8.6E-06 2.9E-10 104.5 7.1 86 9-97 851-939 (1022)
238 2w0m_A SSO2452; RECA, SSPF, un 97.9 9.6E-06 3.3E-10 86.5 6.4 80 9-88 103-193 (235)
239 2e87_A Hypothetical protein PH 97.9 2.6E-05 8.9E-10 89.2 9.7 61 692-754 230-293 (357)
240 1pzn_A RAD51, DNA repair and r 97.9 7.7E-06 2.6E-10 93.0 4.9 87 11-98 208-313 (349)
241 2cvh_A DNA repair and recombin 97.8 2.6E-05 9.1E-10 82.3 8.6 79 9-87 84-185 (220)
242 2i3b_A HCR-ntpase, human cance 97.8 1.8E-06 6.1E-11 89.1 -0.9 81 7-93 81-169 (189)
243 3sop_A Neuronal-specific septi 97.8 4.9E-06 1.7E-10 91.0 1.8 53 7-68 96-148 (270)
244 2dhr_A FTSH; AAA+ protein, hex 97.8 1.4E-07 4.8E-12 111.7 -11.3 128 569-722 55-187 (499)
245 1jjv_A Dephospho-COA kinase; P 97.7 6.6E-06 2.3E-10 86.2 1.3 71 694-768 60-131 (206)
246 1nlf_A Regulatory protein REPA 97.7 2.6E-05 8.7E-10 86.0 5.8 63 6-71 115-182 (279)
247 3vaa_A Shikimate kinase, SK; s 97.7 1.4E-05 4.8E-10 83.3 3.1 38 567-604 12-49 (199)
248 1zu4_A FTSY; GTPase, signal re 97.7 8.6E-06 2.9E-10 91.2 1.5 78 570-649 95-185 (320)
249 3t34_A Dynamin-related protein 97.6 8.4E-05 2.9E-09 85.1 9.0 57 694-751 155-212 (360)
250 1ewq_A DNA mismatch repair pro 97.6 3.5E-05 1.2E-09 95.8 5.4 83 4-94 630-718 (765)
251 3kta_A Chromosome segregation 97.6 2.6E-05 9E-10 79.8 3.3 33 571-604 18-50 (182)
252 3b9q_A Chloroplast SRP recepto 97.6 3E-05 1E-09 86.1 3.7 73 7-89 202-284 (302)
253 4e22_A Cytidylate kinase; P-lo 97.6 5.6E-06 1.9E-10 89.8 -2.1 57 578-636 25-96 (252)
254 1fnn_A CDC6P, cell division co 97.6 0.00015 5E-09 83.8 9.8 44 710-754 124-170 (389)
255 2dy1_A Elongation factor G; tr 97.5 1.9E-05 6.3E-10 97.7 1.9 132 574-754 3-137 (665)
256 2dpy_A FLII, flagellum-specifi 97.5 5.2E-06 1.8E-10 97.1 -2.9 79 8-99 257-343 (438)
257 2j41_A Guanylate kinase; GMP, 97.5 3.5E-05 1.2E-09 80.6 3.5 30 576-605 2-31 (207)
258 3a00_A Guanylate kinase, GMP k 97.5 3.1E-05 1.1E-09 79.7 2.4 26 580-605 1-26 (186)
259 1kgd_A CASK, peripheral plasma 97.5 3.9E-05 1.3E-09 78.5 3.1 39 578-617 3-41 (180)
260 3bh0_A DNAB-like replicative h 97.5 0.00014 4.7E-09 81.5 7.8 130 569-751 57-189 (315)
261 1ega_A Protein (GTP-binding pr 97.5 0.00017 5.7E-09 80.3 8.2 64 694-765 101-170 (301)
262 3b9p_A CG5977-PA, isoform A; A 97.5 0.00051 1.7E-08 76.1 12.0 70 695-764 97-183 (297)
263 4a74_A DNA repair and recombin 97.4 9.2E-05 3.2E-09 78.7 5.6 79 10-88 100-201 (231)
264 3aez_A Pantothenate kinase; tr 97.4 9.4E-06 3.2E-10 90.6 -2.8 37 6-42 173-209 (312)
265 2vp4_A Deoxynucleoside kinase; 97.4 3.1E-05 1.1E-09 82.6 1.4 42 573-620 13-54 (230)
266 3uie_A Adenylyl-sulfate kinase 97.4 2.6E-05 8.9E-10 81.3 0.1 49 569-620 14-64 (200)
267 1wb9_A DNA mismatch repair pro 97.4 8.1E-05 2.8E-09 93.2 4.5 87 9-98 669-756 (800)
268 1v5w_A DMC1, meiotic recombina 97.4 0.001 3.5E-08 75.3 13.1 28 575-602 117-144 (343)
269 2og2_A Putative signal recogni 97.3 0.00011 3.8E-09 83.1 4.6 52 7-68 259-312 (359)
270 1svm_A Large T antigen; AAA+ f 97.3 3.4E-05 1.2E-09 88.0 0.3 37 568-604 157-193 (377)
271 2ehv_A Hypothetical protein PH 97.3 0.0002 6.7E-09 77.2 6.1 65 20-85 128-206 (251)
272 2eyu_A Twitching motility prot 97.3 0.00016 5.5E-09 78.5 5.2 62 15-86 86-147 (261)
273 3tau_A Guanylate kinase, GMP k 97.3 0.0001 3.4E-09 77.3 3.5 28 578-605 6-33 (208)
274 1znw_A Guanylate kinase, GMP k 97.2 1.3E-05 4.6E-10 84.0 -4.0 75 10-85 121-202 (207)
275 2z43_A DNA repair and recombin 97.2 0.00074 2.5E-08 75.9 9.9 138 575-752 102-257 (324)
276 2obl_A ESCN; ATPase, hydrolase 97.2 2.5E-05 8.5E-10 88.4 -2.7 80 7-99 169-254 (347)
277 2qt1_A Nicotinamide riboside k 97.2 0.00018 6E-09 75.3 4.0 30 575-604 16-45 (207)
278 2z4s_A Chromosomal replication 97.2 5.5E-05 1.9E-09 88.9 -0.1 71 710-781 193-265 (440)
279 2q6t_A DNAB replication FORK h 97.1 0.0015 5.1E-08 76.8 11.2 170 569-769 189-397 (444)
280 3ney_A 55 kDa erythrocyte memb 97.1 0.00019 6.6E-09 73.9 2.9 29 577-605 16-44 (197)
281 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00027 9.3E-09 69.7 3.8 31 570-601 14-44 (149)
282 1pui_A ENGB, probable GTP-bind 97.1 0.00019 6.4E-09 75.0 2.6 51 7-57 147-198 (210)
283 3ice_A Transcription terminati 97.0 6.5E-05 2.2E-09 84.2 -1.3 52 540-603 132-197 (422)
284 3tqc_A Pantothenate kinase; bi 97.0 3.4E-05 1.2E-09 86.0 -3.9 39 567-605 73-117 (321)
285 1knq_A Gluconate kinase; ALFA/ 97.0 0.00026 9E-09 71.7 3.1 36 578-619 6-41 (175)
286 3llm_A ATP-dependent RNA helic 97.0 0.00029 1E-08 75.3 3.3 67 695-763 162-229 (235)
287 2qby_A CDC6 homolog 1, cell di 97.0 0.00035 1.2E-08 80.3 4.0 27 578-604 43-69 (386)
288 1rz3_A Hypothetical protein rb 96.9 0.00012 4.1E-09 76.3 -0.2 41 577-619 19-59 (201)
289 3asz_A Uridine kinase; cytidin 96.9 1.3E-05 4.4E-10 84.3 -7.8 63 7-69 87-160 (211)
290 3kl4_A SRP54, signal recogniti 96.9 0.0011 3.9E-08 76.6 7.8 51 702-752 170-223 (433)
291 1kag_A SKI, shikimate kinase I 96.9 0.00032 1.1E-08 70.8 2.5 27 579-605 3-29 (173)
292 3cf0_A Transitional endoplasmi 96.9 0.00065 2.2E-08 75.5 5.0 29 576-604 45-73 (301)
293 1ypw_A Transitional endoplasmi 96.8 0.001 3.4E-08 84.1 7.0 31 575-605 233-263 (806)
294 2qnr_A Septin-2, protein NEDD5 96.8 0.00016 5.6E-09 80.3 -0.1 55 6-68 110-165 (301)
295 3jvv_A Twitching mobility prot 96.8 0.00074 2.5E-08 76.6 4.4 60 19-88 188-247 (356)
296 3cr8_A Sulfate adenylyltranfer 96.7 0.00023 8E-09 85.2 -0.4 42 576-619 365-408 (552)
297 2b8t_A Thymidine kinase; deoxy 96.7 0.0024 8.2E-08 67.1 7.2 53 711-768 89-150 (223)
298 1u94_A RECA protein, recombina 96.6 0.019 6.5E-07 64.9 14.9 33 570-602 51-85 (356)
299 2gj8_A MNME, tRNA modification 96.5 0.0023 7.7E-08 64.5 5.7 27 578-604 2-28 (172)
300 3qks_A DNA double-strand break 96.5 0.0013 4.3E-08 68.5 3.8 30 571-601 15-44 (203)
301 3lxx_A GTPase IMAP family memb 96.5 0.011 3.7E-07 63.0 11.3 42 710-751 111-154 (239)
302 4eaq_A DTMP kinase, thymidylat 96.5 0.0011 3.9E-08 70.3 3.3 36 570-605 13-51 (229)
303 3m6a_A ATP-dependent protease 96.4 0.00066 2.3E-08 81.8 0.8 48 568-618 97-144 (543)
304 1mky_A Probable GTP-binding pr 96.3 0.0023 8E-08 75.0 5.1 40 581-620 181-230 (439)
305 2p67_A LAO/AO transport system 96.3 0.00056 1.9E-08 77.5 -0.3 38 567-604 43-80 (341)
306 2pez_A Bifunctional 3'-phospho 96.3 0.0017 5.8E-08 65.9 3.3 27 578-604 3-29 (179)
307 3bgw_A DNAB-like replicative h 96.3 0.0064 2.2E-07 71.1 8.6 33 570-602 187-219 (444)
308 3h4m_A Proteasome-activating n 96.3 0.0049 1.7E-07 67.6 7.2 28 577-604 48-75 (285)
309 1odf_A YGR205W, hypothetical 3 96.3 0.00031 1.1E-08 77.4 -2.6 36 7-44 132-169 (290)
310 1m2o_B GTP-binding protein SAR 96.3 0.0031 1.1E-07 64.6 5.1 34 569-603 13-46 (190)
311 3szr_A Interferon-induced GTP- 96.3 0.00035 1.2E-08 85.3 -2.6 89 12-100 131-237 (608)
312 1cke_A CK, MSSA, protein (cyti 96.2 0.0018 6E-08 68.5 3.0 36 580-615 5-41 (227)
313 1y63_A LMAJ004144AAA protein; 96.2 0.0019 6.5E-08 66.0 3.0 32 572-603 2-33 (184)
314 1l8q_A Chromosomal replication 96.2 0.009 3.1E-07 66.9 8.8 45 709-753 96-141 (324)
315 1n0w_A DNA repair protein RAD5 96.2 0.0067 2.3E-07 64.6 7.4 79 10-88 99-210 (243)
316 2qor_A Guanylate kinase; phosp 96.2 0.002 6.8E-08 67.1 2.8 29 576-604 8-36 (204)
317 3d8b_A Fidgetin-like protein 1 96.0 0.023 8E-07 64.5 11.0 27 578-604 115-141 (357)
318 2i1q_A DNA repair and recombin 95.9 0.025 8.6E-07 63.2 10.8 33 570-602 87-120 (322)
319 2qag_A Septin-2, protein NEDD5 95.9 0.0011 3.9E-08 75.4 -0.7 32 567-604 30-61 (361)
320 2v1u_A Cell division control p 95.8 0.013 4.5E-07 67.1 8.0 27 578-604 42-68 (387)
321 2www_A Methylmalonic aciduria 95.8 0.0038 1.3E-07 70.7 3.3 27 578-604 72-98 (349)
322 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0012 4.3E-08 73.7 -1.0 36 569-604 11-48 (359)
323 2if2_A Dephospho-COA kinase; a 95.7 0.0036 1.2E-07 64.9 2.6 21 582-602 3-23 (204)
324 1f6b_A SAR1; gtpases, N-termin 95.7 0.0015 5.1E-08 67.6 -0.7 35 568-603 14-48 (198)
325 2wjg_A FEOB, ferrous iron tran 95.6 0.011 3.9E-07 59.9 5.7 22 582-603 9-30 (188)
326 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.03 1E-06 60.2 9.2 25 579-603 38-62 (262)
327 2yvu_A Probable adenylyl-sulfa 95.5 0.0063 2.1E-07 62.1 3.2 29 576-604 9-37 (186)
328 3cm0_A Adenylate kinase; ATP-b 95.5 0.0067 2.3E-07 61.8 3.4 25 578-602 2-26 (186)
329 2wji_A Ferrous iron transport 95.5 0.0068 2.3E-07 60.4 3.3 23 582-604 5-27 (165)
330 1m7g_A Adenylylsulfate kinase; 95.5 0.0056 1.9E-07 64.0 2.8 30 576-605 21-50 (211)
331 1np6_A Molybdopterin-guanine d 95.4 0.0067 2.3E-07 61.2 3.2 37 581-617 7-44 (174)
332 3ec2_A DNA replication protein 95.4 0.011 3.8E-07 59.8 4.7 50 23-73 96-146 (180)
333 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.13 4.3E-06 57.4 13.7 27 578-604 43-69 (322)
334 3t61_A Gluconokinase; PSI-biol 95.4 0.0057 1.9E-07 63.3 2.4 25 580-604 18-42 (202)
335 2f1r_A Molybdopterin-guanine d 95.3 0.0012 4.1E-08 66.6 -2.8 23 9-31 103-125 (171)
336 2jeo_A Uridine-cytidine kinase 95.3 0.0028 9.6E-08 68.0 -0.1 75 6-101 113-188 (245)
337 3io5_A Recombination and repai 95.3 0.057 1.9E-06 59.2 10.0 25 575-600 24-48 (333)
338 1xp8_A RECA protein, recombina 95.3 0.11 3.9E-06 58.7 12.9 28 575-602 69-96 (366)
339 1lw7_A Transcriptional regulat 95.2 0.0023 7.7E-08 73.2 -1.5 87 9-99 258-354 (365)
340 2ffh_A Protein (FFH); SRP54, s 95.2 0.005 1.7E-07 71.1 1.4 46 571-620 91-136 (425)
341 1sxj_C Activator 1 40 kDa subu 95.2 0.0022 7.5E-08 72.5 -1.6 38 567-604 31-70 (340)
342 1q57_A DNA primase/helicase; d 95.1 0.1 3.6E-06 62.1 12.9 33 570-602 232-264 (503)
343 1qhx_A CPT, protein (chloramph 95.1 0.01 3.4E-07 59.9 3.4 25 580-604 3-27 (178)
344 3r20_A Cytidylate kinase; stru 95.1 0.0094 3.2E-07 63.0 3.2 24 580-603 9-32 (233)
345 3kb2_A SPBC2 prophage-derived 95.1 0.0096 3.3E-07 59.6 3.2 22 582-603 3-24 (173)
346 1xx6_A Thymidine kinase; NESG, 95.1 0.025 8.7E-07 57.8 6.2 53 711-768 81-142 (191)
347 2bdt_A BH3686; alpha-beta prot 95.1 0.00081 2.8E-08 69.0 -5.2 82 11-99 96-183 (189)
348 2zej_A Dardarin, leucine-rich 95.0 0.01 3.5E-07 60.3 3.1 22 582-603 4-25 (184)
349 1q3t_A Cytidylate kinase; nucl 95.0 0.0099 3.4E-07 63.3 3.1 28 576-603 12-39 (236)
350 2ohf_A Protein OLA1, GTP-bindi 95.0 0.011 3.6E-07 67.5 3.4 30 574-603 16-45 (396)
351 1lv7_A FTSH; alpha/beta domain 94.9 0.0085 2.9E-07 64.6 2.2 33 570-604 37-69 (257)
352 2p5t_B PEZT; postsegregational 94.9 0.0063 2.2E-07 65.6 1.1 46 569-619 22-67 (253)
353 2qag_C Septin-7; cell cycle, c 94.9 0.0072 2.5E-07 69.8 1.5 54 9-68 118-175 (418)
354 2bbw_A Adenylate kinase 4, AK4 94.8 0.0049 1.7E-07 66.1 0.0 44 7-57 150-198 (246)
355 1ex7_A Guanylate kinase; subst 94.7 0.014 4.6E-07 59.5 3.0 22 582-603 3-24 (186)
356 1kht_A Adenylate kinase; phosp 94.7 0.015 5E-07 59.3 3.3 24 580-603 3-26 (192)
357 2rhm_A Putative kinase; P-loop 94.7 0.014 4.7E-07 59.7 3.0 26 578-603 3-28 (193)
358 1j8m_F SRP54, signal recogniti 94.7 0.0096 3.3E-07 65.6 1.9 33 571-604 89-122 (297)
359 2ze6_A Isopentenyl transferase 94.5 0.016 5.3E-07 62.5 3.1 24 581-604 2-25 (253)
360 2j9r_A Thymidine kinase; TK1, 94.5 0.049 1.7E-06 56.3 6.6 53 711-768 101-162 (214)
361 3trf_A Shikimate kinase, SK; a 94.5 0.019 6.3E-07 58.4 3.3 25 579-603 4-28 (185)
362 3lw7_A Adenylate kinase relate 94.3 0.019 6.6E-07 57.3 3.1 19 582-600 3-21 (179)
363 3iij_A Coilin-interacting nucl 94.3 0.019 6.4E-07 58.1 2.8 25 578-602 9-33 (180)
364 1vht_A Dephospho-COA kinase; s 94.3 0.023 7.7E-07 59.5 3.5 24 579-602 3-26 (218)
365 2v54_A DTMP kinase, thymidylat 94.2 0.022 7.4E-07 58.8 3.3 26 579-604 3-28 (204)
366 1gvn_B Zeta; postsegregational 94.2 0.021 7.3E-07 62.6 3.3 27 578-604 31-57 (287)
367 2plr_A DTMP kinase, probable t 94.1 0.025 8.6E-07 58.6 3.6 25 579-603 3-27 (213)
368 2jaq_A Deoxyguanosine kinase; 94.1 0.023 7.7E-07 58.6 3.2 23 582-604 2-24 (205)
369 4b4t_M 26S protease regulatory 94.1 0.19 6.5E-06 58.0 11.0 27 578-604 213-239 (434)
370 4b4t_K 26S protease regulatory 94.1 0.23 7.8E-06 57.3 11.6 27 578-604 204-230 (428)
371 2wwf_A Thymidilate kinase, put 94.0 0.025 8.4E-07 58.8 3.2 26 578-603 8-33 (212)
372 1ly1_A Polynucleotide kinase; 94.0 0.027 9.3E-07 56.6 3.4 22 581-602 3-24 (181)
373 1ko7_A HPR kinase/phosphatase; 94.0 0.042 1.4E-06 60.4 5.0 37 566-603 131-167 (314)
374 2ewv_A Twitching motility prot 93.9 0.031 1E-06 63.8 4.1 59 17-85 199-257 (372)
375 4b4t_I 26S protease regulatory 93.9 0.24 8.2E-06 56.6 11.3 26 579-604 215-240 (437)
376 3lda_A DNA repair protein RAD5 93.9 0.055 1.9E-06 62.1 6.1 74 15-88 259-364 (400)
377 1via_A Shikimate kinase; struc 93.9 0.025 8.5E-07 56.9 2.9 23 582-604 6-28 (175)
378 1rj9_A FTSY, signal recognitio 93.9 0.019 6.6E-07 63.4 2.2 54 10-68 203-256 (304)
379 2c95_A Adenylate kinase 1; tra 93.9 0.025 8.5E-07 57.9 2.8 26 578-603 7-32 (196)
380 1xjc_A MOBB protein homolog; s 93.8 0.027 9.3E-07 56.2 2.9 23 581-603 5-27 (169)
381 3co5_A Putative two-component 93.8 0.11 3.6E-06 50.4 7.2 42 711-753 75-116 (143)
382 3k53_A Ferrous iron transport 93.8 0.024 8.3E-07 61.6 2.7 23 582-604 5-27 (271)
383 1udx_A The GTP-binding protein 93.8 0.019 6.5E-07 66.2 1.9 71 6-81 249-319 (416)
384 1nn5_A Similar to deoxythymidy 93.7 0.029 9.8E-07 58.4 3.1 26 578-603 7-32 (215)
385 1uf9_A TT1252 protein; P-loop, 93.7 0.031 1.1E-06 57.5 3.2 24 580-603 8-31 (203)
386 3cmw_A Protein RECA, recombina 93.7 0.22 7.4E-06 66.6 11.9 28 576-603 728-755 (1706)
387 4b4t_J 26S protease regulatory 93.7 0.25 8.7E-06 56.1 11.0 32 571-604 175-206 (405)
388 1gtv_A TMK, thymidylate kinase 93.7 0.015 5E-07 60.7 0.7 23 582-604 2-24 (214)
389 3vfd_A Spastin; ATPase, microt 93.7 0.2 6.8E-06 57.4 10.4 27 578-604 146-172 (389)
390 2orv_A Thymidine kinase; TP4A 93.7 0.2 6.9E-06 52.2 9.2 53 710-768 89-150 (234)
391 1tev_A UMP-CMP kinase; ploop, 93.6 0.037 1.3E-06 56.4 3.5 24 579-602 2-25 (196)
392 4b4t_L 26S protease subunit RP 93.5 0.3 1E-05 56.3 11.3 70 705-781 268-354 (437)
393 2bwj_A Adenylate kinase 5; pho 93.5 0.014 4.9E-07 59.9 0.2 27 577-603 9-35 (199)
394 1lvg_A Guanylate kinase, GMP k 93.5 0.0036 1.2E-07 64.8 -4.5 56 20-85 116-172 (198)
395 1nks_A Adenylate kinase; therm 93.4 0.033 1.1E-06 56.7 2.9 22 582-603 3-24 (194)
396 1aky_A Adenylate kinase; ATP:A 93.3 0.04 1.4E-06 57.7 3.4 26 578-603 2-27 (220)
397 2vli_A Antibiotic resistance p 93.3 0.032 1.1E-06 56.4 2.4 25 579-603 4-28 (183)
398 2kjq_A DNAA-related protein; s 93.3 0.12 4E-06 50.5 6.4 48 23-72 79-127 (149)
399 3b1v_A Ferrous iron uptake tra 93.2 0.042 1.4E-06 59.7 3.3 23 582-604 5-27 (272)
400 2z0h_A DTMP kinase, thymidylat 93.1 0.044 1.5E-06 56.0 3.2 22 582-603 2-23 (197)
401 3q72_A GTP-binding protein RAD 93.1 0.038 1.3E-06 54.5 2.7 23 582-604 4-26 (166)
402 2ged_A SR-beta, signal recogni 93.0 0.039 1.3E-06 56.1 2.7 23 582-604 50-72 (193)
403 2nzj_A GTP-binding protein REM 93.0 0.046 1.6E-06 54.4 3.1 23 582-604 6-28 (175)
404 1z2a_A RAS-related protein RAB 92.9 0.043 1.5E-06 54.1 2.7 22 582-603 7-28 (168)
405 3iev_A GTP-binding protein ERA 92.9 0.045 1.6E-06 60.7 3.1 23 582-604 12-34 (308)
406 2qmh_A HPR kinase/phosphorylas 92.9 0.084 2.9E-06 53.8 4.8 35 569-604 24-58 (205)
407 1zd8_A GTP:AMP phosphotransfer 92.9 0.046 1.6E-06 57.6 3.0 26 578-603 5-30 (227)
408 2erx_A GTP-binding protein DI- 92.9 0.049 1.7E-06 53.9 3.1 22 582-603 5-26 (172)
409 1fzq_A ADP-ribosylation factor 92.8 0.043 1.5E-06 55.4 2.7 22 582-603 18-39 (181)
410 3ake_A Cytidylate kinase; CMP 92.8 0.047 1.6E-06 56.4 3.0 22 582-603 4-25 (208)
411 3lxw_A GTPase IMAP family memb 92.8 0.048 1.7E-06 58.3 3.1 57 695-752 86-148 (247)
412 2cdn_A Adenylate kinase; phosp 92.8 0.054 1.9E-06 55.7 3.4 25 579-603 19-43 (201)
413 3q85_A GTP-binding protein REM 92.8 0.052 1.8E-06 53.7 3.1 22 582-603 4-25 (169)
414 3cmu_A Protein RECA, recombina 92.7 0.73 2.5E-05 62.5 14.7 33 570-602 371-405 (2050)
415 2r6a_A DNAB helicase, replicat 92.7 0.15 5.2E-06 59.7 7.5 79 9-89 295-401 (454)
416 1zuh_A Shikimate kinase; alpha 92.7 0.055 1.9E-06 53.8 3.2 23 581-603 8-30 (168)
417 1kao_A RAP2A; GTP-binding prot 92.7 0.048 1.6E-06 53.6 2.7 22 582-603 5-26 (167)
418 2dyk_A GTP-binding protein; GT 92.7 0.049 1.7E-06 53.3 2.7 23 582-604 3-25 (161)
419 3fb4_A Adenylate kinase; psych 92.6 0.055 1.9E-06 56.3 3.2 22 582-603 2-23 (216)
420 3tw8_B RAS-related protein RAB 92.6 0.052 1.8E-06 54.3 2.9 22 582-603 11-32 (181)
421 1u8z_A RAS-related protein RAL 92.6 0.051 1.7E-06 53.5 2.7 22 582-603 6-27 (168)
422 3ihw_A Centg3; RAS, centaurin, 92.5 0.1 3.5E-06 52.8 5.0 22 582-603 22-43 (184)
423 2ce2_X GTPase HRAS; signaling 92.5 0.047 1.6E-06 53.5 2.4 22 582-603 5-26 (166)
424 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.064 2.2E-06 57.9 3.6 25 579-603 3-27 (260)
425 1ukz_A Uridylate kinase; trans 92.5 0.062 2.1E-06 55.3 3.4 24 580-603 15-38 (203)
426 1sxj_E Activator 1 40 kDa subu 92.5 0.11 3.7E-06 58.7 5.6 63 25-96 132-194 (354)
427 1z0j_A RAB-22, RAS-related pro 92.5 0.053 1.8E-06 53.5 2.7 23 582-604 8-30 (170)
428 2pbr_A DTMP kinase, thymidylat 92.5 0.061 2.1E-06 54.7 3.2 22 582-603 2-23 (195)
429 3cmw_A Protein RECA, recombina 92.4 1 3.5E-05 60.3 15.4 33 570-602 371-405 (1706)
430 1z08_A RAS-related protein RAB 92.4 0.053 1.8E-06 53.6 2.7 22 582-603 8-29 (170)
431 1svi_A GTP-binding protein YSX 92.4 0.053 1.8E-06 55.2 2.7 23 582-604 25-47 (195)
432 1e6c_A Shikimate kinase; phosp 92.4 0.053 1.8E-06 54.1 2.7 22 582-603 4-25 (173)
433 1ek0_A Protein (GTP-binding pr 92.4 0.055 1.9E-06 53.4 2.7 23 582-604 5-27 (170)
434 1zak_A Adenylate kinase; ATP:A 92.4 0.05 1.7E-06 57.0 2.5 25 579-603 4-28 (222)
435 1c1y_A RAS-related protein RAP 92.4 0.055 1.9E-06 53.2 2.7 22 582-603 5-26 (167)
436 1wms_A RAB-9, RAB9, RAS-relate 92.4 0.055 1.9E-06 54.0 2.7 23 582-604 9-31 (177)
437 1g16_A RAS-related protein SEC 92.4 0.051 1.7E-06 53.7 2.4 23 582-604 5-27 (170)
438 3dl0_A Adenylate kinase; phosp 92.3 0.064 2.2E-06 55.9 3.2 22 582-603 2-23 (216)
439 2lkc_A Translation initiation 92.3 0.071 2.4E-06 53.2 3.5 24 580-603 8-31 (178)
440 3tlx_A Adenylate kinase 2; str 92.3 0.068 2.3E-06 57.0 3.5 24 579-602 28-51 (243)
441 2pt5_A Shikimate kinase, SK; a 92.3 0.067 2.3E-06 53.1 3.2 22 582-603 2-23 (168)
442 2grj_A Dephospho-COA kinase; T 92.3 0.067 2.3E-06 54.8 3.2 24 580-603 12-35 (192)
443 2iyv_A Shikimate kinase, SK; t 92.3 0.054 1.8E-06 54.8 2.5 23 581-603 3-25 (184)
444 1ky3_A GTP-binding protein YPT 92.3 0.058 2E-06 54.0 2.7 23 582-604 10-32 (182)
445 1qf9_A UMP/CMP kinase, protein 92.2 0.068 2.3E-06 54.3 3.2 24 580-603 6-29 (194)
446 3pqc_A Probable GTP-binding pr 92.2 0.059 2E-06 54.6 2.7 23 582-604 25-47 (195)
447 2cxx_A Probable GTP-binding pr 92.1 0.061 2.1E-06 54.4 2.7 22 583-604 4-25 (190)
448 1moz_A ARL1, ADP-ribosylation 92.1 0.049 1.7E-06 54.7 2.0 24 580-603 18-41 (183)
449 1wf3_A GTP-binding protein; GT 92.1 0.07 2.4E-06 58.9 3.3 26 578-604 6-31 (301)
450 2fn4_A P23, RAS-related protei 92.0 0.058 2E-06 53.9 2.4 22 582-603 11-32 (181)
451 1r2q_A RAS-related protein RAB 92.0 0.065 2.2E-06 52.8 2.7 22 582-603 8-29 (170)
452 2dr3_A UPF0273 protein PH0284; 92.0 0.29 1E-05 51.7 8.1 69 18-86 117-196 (247)
453 3iby_A Ferrous iron transport 92.0 0.068 2.3E-06 57.5 3.0 23 582-604 3-25 (256)
454 2hxs_A RAB-26, RAS-related pro 92.0 0.071 2.4E-06 53.2 3.0 22 582-603 8-29 (178)
455 3t5d_A Septin-7; GTP-binding p 92.0 0.062 2.1E-06 58.5 2.7 22 582-603 10-31 (274)
456 2oil_A CATX-8, RAS-related pro 92.0 0.066 2.3E-06 54.4 2.7 22 582-603 27-48 (193)
457 1upt_A ARL1, ADP-ribosylation 91.9 0.067 2.3E-06 52.9 2.7 22 582-603 9-30 (171)
458 4dsu_A GTPase KRAS, isoform 2B 91.9 0.066 2.3E-06 54.0 2.7 22 582-603 6-27 (189)
459 2dby_A GTP-binding protein; GD 91.9 0.061 2.1E-06 60.9 2.6 21 583-603 4-24 (368)
460 1r8s_A ADP-ribosylation factor 91.9 0.069 2.4E-06 52.4 2.7 21 583-603 3-23 (164)
461 3cbq_A GTP-binding protein REM 91.9 0.066 2.3E-06 54.8 2.7 22 582-603 25-46 (195)
462 3bc1_A RAS-related protein RAB 91.8 0.071 2.4E-06 53.9 2.7 22 582-603 13-34 (195)
463 3dm5_A SRP54, signal recogniti 91.8 1.4 4.9E-05 50.8 13.8 25 579-603 99-123 (443)
464 3clv_A RAB5 protein, putative; 91.7 0.07 2.4E-06 54.4 2.7 22 582-603 9-30 (208)
465 1a7j_A Phosphoribulokinase; tr 91.7 0.05 1.7E-06 59.7 1.6 24 579-602 4-27 (290)
466 4ag6_A VIRB4 ATPase, type IV s 91.7 0.068 2.3E-06 61.5 2.8 44 711-754 262-308 (392)
467 3v9p_A DTMP kinase, thymidylat 91.7 0.071 2.4E-06 56.1 2.7 27 577-603 22-48 (227)
468 1uj2_A Uridine-cytidine kinase 91.7 0.082 2.8E-06 56.6 3.2 23 581-603 23-45 (252)
469 4edh_A DTMP kinase, thymidylat 91.7 0.097 3.3E-06 54.5 3.6 26 578-603 4-29 (213)
470 2f7s_A C25KG, RAS-related prot 91.6 0.17 5.7E-06 52.5 5.5 23 582-604 27-49 (217)
471 2g6b_A RAS-related protein RAB 91.6 0.075 2.6E-06 53.1 2.7 23 582-604 12-34 (180)
472 3t1o_A Gliding protein MGLA; G 91.6 0.085 2.9E-06 53.5 3.1 23 582-604 16-38 (198)
473 2y8e_A RAB-protein 6, GH09086P 91.5 0.072 2.5E-06 53.1 2.4 22 582-603 16-37 (179)
474 3a1s_A Iron(II) transport prot 91.5 0.084 2.9E-06 56.8 3.1 23 582-604 7-29 (258)
475 1ksh_A ARF-like protein 2; sma 91.5 0.089 3E-06 53.0 3.1 26 579-604 17-42 (186)
476 1z0f_A RAB14, member RAS oncog 91.5 0.08 2.8E-06 52.7 2.7 23 582-604 17-39 (179)
477 2a9k_A RAS-related protein RAL 91.5 0.08 2.7E-06 53.2 2.7 22 582-603 20-41 (187)
478 3con_A GTPase NRAS; structural 91.5 0.08 2.7E-06 53.6 2.7 22 582-603 23-44 (190)
479 3bos_A Putative DNA replicatio 91.4 0.095 3.2E-06 55.2 3.4 44 710-753 103-148 (242)
480 1jal_A YCHF protein; nucleotid 91.4 0.084 2.9E-06 59.5 3.0 24 580-603 2-25 (363)
481 2efe_B Small GTP-binding prote 91.3 0.083 2.9E-06 52.8 2.7 22 582-603 14-35 (181)
482 2xb4_A Adenylate kinase; ATP-b 91.3 0.095 3.3E-06 55.0 3.2 22 582-603 2-23 (223)
483 1nrj_B SR-beta, signal recogni 91.3 0.083 2.8E-06 54.9 2.7 23 582-604 14-36 (218)
484 3umf_A Adenylate kinase; rossm 91.3 0.084 2.9E-06 55.1 2.7 27 577-603 26-52 (217)
485 2f6r_A COA synthase, bifunctio 91.3 0.087 3E-06 57.5 2.9 22 580-601 75-96 (281)
486 3be4_A Adenylate kinase; malar 91.3 0.085 2.9E-06 55.1 2.7 25 579-603 4-28 (217)
487 2gf9_A RAS-related protein RAB 91.3 0.086 3E-06 53.4 2.7 23 582-604 24-46 (189)
488 3a8t_A Adenylate isopentenyltr 91.2 0.14 4.7E-06 56.9 4.4 27 579-605 39-65 (339)
489 2cjw_A GTP-binding protein GEM 91.2 0.088 3E-06 53.7 2.7 21 582-602 8-28 (192)
490 2il1_A RAB12; G-protein, GDP, 91.2 0.096 3.3E-06 53.3 3.0 23 582-604 28-50 (192)
491 3i8s_A Ferrous iron transport 91.2 0.087 3E-06 57.3 2.8 23 582-604 5-27 (274)
492 2bme_A RAB4A, RAS-related prot 91.2 0.082 2.8E-06 53.2 2.4 22 582-603 12-33 (186)
493 2bov_A RAla, RAS-related prote 91.1 0.091 3.1E-06 53.9 2.7 22 582-603 16-37 (206)
494 1m7b_A RND3/RHOE small GTP-bin 91.1 0.085 2.9E-06 53.2 2.4 22 582-603 9-30 (184)
495 2xtp_A GTPase IMAP family memb 91.1 0.089 3.1E-06 56.6 2.7 23 582-604 24-46 (260)
496 3tqf_A HPR(Ser) kinase; transf 91.1 0.16 5.5E-06 50.4 4.2 34 569-603 6-39 (181)
497 1vg8_A RAS-related protein RAB 91.1 0.091 3.1E-06 54.0 2.7 23 582-604 10-32 (207)
498 2fg5_A RAB-22B, RAS-related pr 91.0 0.085 2.9E-06 53.7 2.4 23 582-604 25-47 (192)
499 4fcw_A Chaperone protein CLPB; 91.0 0.1 3.4E-06 57.7 3.2 26 579-604 46-71 (311)
500 3tkl_A RAS-related protein RAB 91.0 0.094 3.2E-06 53.3 2.7 22 582-603 18-39 (196)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-62 Score=651.63 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=184.4
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
..+.|+|+||+|+|+.+ .+.++|+|+||+|+|||.+||+||||||||||+++|.|..++ .+|+|.+||
T Consensus 1073 ~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG 1140 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDG 1140 (1321)
T ss_dssp CCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETT
T ss_pred CCCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECC
Confidence 34679999999999743 234589999999999999999999999999999999998774 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g 687 (1140)
.+++. ..+|+++++||||+.+|+ .|++|||.|+.. +.+.++++ +.++++..++. +-.||.+|
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEec
Confidence 98765 467889999999999987 699999987531 23344433 55666666553 45688888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..| ..||||||||++|||||++||+||+||||||+||+++++.|++.|+++. +|+|+|+++|+++. ...+|||++|
T Consensus 1213 e~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vl 1288 (1321)
T 4f4c_A 1213 DRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVV 1288 (1321)
T ss_dssp TTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEE
T ss_pred CCC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEE
Confidence 765 4699999999999999999999999999999999999999999998864 58999999999974 5679999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |+++.+|+++
T Consensus 1289 d~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1289 SN-GTIIEKGTHT 1300 (1321)
T ss_dssp SS-SSEEEEECHH
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.7e-56 Score=590.98 Aligned_cols=217 Identities=27% Similarity=0.377 Sum_probs=177.2
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++++||+++|+.+ .+.++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSS
T ss_pred CCcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCE
Confidence 4579999999999632 123589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~ 688 (1140)
++.. ..+|+.++||+|++.+++ .||+||+.++... ...+.++ +.+.++..+ +.+..|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCC
Confidence 8754 346788999999998775 7999999875311 1223332 223333333 34456777776
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ ..||||||||++|||||+++|+||+|||||||||+.++..+.+.|++. .+|+|+|+++|+++. + ..||||++|+
T Consensus 1168 ~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 KG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred CC-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999885 459999999999974 4 6699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 1244 ~-G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 N-GKVKEHGTHQ 1254 (1284)
T ss_dssp T-BEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.5e-44 Score=402.07 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=192.2
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|... .++.++|+||||+|++||+++|+||||||||||+|+|+|..++ .+|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 49999999999631 1245799999999999999999999999999999999998774 489999999987
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
... ..|+.+|||+|++.+++.+||+||+.++...+ ....++.+++++++++.+||.+..+..+ .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 531 23567999999999999999999999987654 2345666778999999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ .+.++|||+++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 57889999999985 899
Q ss_pred EEECCCC
Q 001146 774 IYVGPLG 780 (1140)
Q Consensus 774 ~~~g~~~ 780 (1140)
+..|++.
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999864
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.9e-43 Score=381.77 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=186.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|+.. ...+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 6889999999621 1135699999999999999999999999999999999998874 4899999998764
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCc
Q 001146 622 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSG 693 (1140)
Q Consensus 622 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~ 693 (1140)
... .++.+|||+|++.+++.+||+||+.++...+.......++.++++.++++.+++.+.. +.. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1346999999999999999999999987654322344556667788999999998643 554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.|||+++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4689999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..++..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99998874
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-43 Score=402.52 Aligned_cols=215 Identities=25% Similarity=0.365 Sum_probs=191.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|. ++.+|+||||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 388999999983 35689999999999999999999999999999999998874 489999999987
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
... ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..+..+ .+||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHH
Confidence 542 23567999999999999999999999987654 2456666778999999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++|||++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 68899999999985 89999998
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
+.
T Consensus 218 ~~ 219 (381)
T 3rlf_A 218 PL 219 (381)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 6
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.6e-43 Score=427.49 Aligned_cols=202 Identities=23% Similarity=0.276 Sum_probs=168.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.. ..|+++|+++++||+++|+||||||||||+++|+|..++. +|+|.+
T Consensus 357 ~l~~~~l~~~~~~--------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECSS--------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC-----
T ss_pred EEEEeceEEEecc--------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE-----
Confidence 4788898877631 2589999999999999999999999999999999987643 677764
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.+.++|++|+....+.+||.|++....... ...++.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 245899999987778899999887541100 011245688999999988777664 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~ 778 (1140)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +.|.|||+++||+. .+..++||+++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 57789999999973 278888999
Q ss_pred CCc
Q 001146 779 LGR 781 (1140)
Q Consensus 779 ~~~ 781 (1140)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 864
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.8e-43 Score=388.90 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|+ +++.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 489999999984 123589999999999999999999999999999999998774 489999999987
Q ss_pred C--c---ccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 K--Q---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~--~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
. . ...++.+|||+|++ ..+..+||+||+.|+.... ..+.++.+++++++++.++|.+..+..+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 23467899999986 3344799999999987643 2345566677899999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.++|||+++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 57789999999985 899
Q ss_pred EEECCCCc
Q 001146 774 IYVGPLGR 781 (1140)
Q Consensus 774 ~~~g~~~~ 781 (1140)
++.|++.+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99999753
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-43 Score=400.74 Aligned_cols=215 Identities=25% Similarity=0.399 Sum_probs=187.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|. ++++|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 388999999983 35689999999999999999999999999999999998874 489999999876
Q ss_pred ----Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 001146 621 ----KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ----~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LS 695 (1140)
.. ...++.+|||+|++.++|.+||+||+.|+...+. ...++.+++++++++.++|.+..+..+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 22 2345679999999999999999999999764432 233455667899999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|.|+|++|||++ ++..++|||++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887765 46999999999986 68899999999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 219 ~~g~~~ 224 (359)
T 3fvq_A 219 QTASPH 224 (359)
T ss_dssp EEECHH
T ss_pred EEeCHH
Confidence 999875
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.6e-43 Score=376.26 Aligned_cols=213 Identities=22% Similarity=0.272 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 388999999883 24689999999999999999999999999999999998774 489999999886
Q ss_pred Ccc------ccc-ceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQE------TFA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~------~~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
... ..+ +.++||+|++.+++.+||+||+.+....+ ....++.+++++++++.+++.+..+..+ .+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 57999999999999999999999876543 1233444567889999999988877664 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 773 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 773 (1140)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+ +.||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999975 34 88999999985 899
Q ss_pred EEECCC
Q 001146 774 IYVGPL 779 (1140)
Q Consensus 774 ~~~g~~ 779 (1140)
++.|++
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 999864
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.1e-43 Score=382.65 Aligned_cols=214 Identities=25% Similarity=0.332 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 389999999983 24689999999999999999999999999999999998774 489999999876
Q ss_pred C--c---ccccceEEEeccCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 001146 621 K--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 694 (1140)
Q Consensus 621 ~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L 694 (1140)
. . ...++.++||+|++.+++.+||+||+.++. ..+ ....++.+++++++++.++|.+..+..+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 332 2234444567889999999988877664 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 774 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 774 (1140)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 57788999999985 8999
Q ss_pred EECCC
Q 001146 775 YVGPL 779 (1140)
Q Consensus 775 ~~g~~ 779 (1140)
..|++
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99986
No 11
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.2e-43 Score=421.60 Aligned_cols=216 Identities=20% Similarity=0.242 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++..+.. ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~~--------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEETT--------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred eEEEcceEEEECC--------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---
Confidence 4778888877631 247888999999999999999999999999999998774 378888654
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
+.++|++|+....+.+||+||+.+...... . . ....++++++.+++.+..+..+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhcc--c-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 347899998776678999999987421110 0 1 1234678899999988777764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~ 778 (1140)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++ ++..+||||++|++ .|.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 67889999999974 245666676
Q ss_pred CCcchhHHHHHHhhC
Q 001146 779 LGRHSCHLISYFEAI 793 (1140)
Q Consensus 779 ~~~~~~~~~~~f~~~ 793 (1140)
+......+..++...
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 654333445555544
No 12
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.5e-43 Score=420.15 Aligned_cols=202 Identities=24% Similarity=0.288 Sum_probs=167.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|+++.|.. ..|+++|+++++||++||+||||||||||+++|+|..++. +|+|.+
T Consensus 287 ~l~~~~l~~~~~~--------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEETT--------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC-----
T ss_pred EEEEeeEEEEECC--------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE-----
Confidence 4788899887731 2589999999999999999999999999999999987643 677764
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
...++|++|+....+.+||.|++........ . .++.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2358999999877788999998865311110 0 1234678899999987776654 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 778 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~ 778 (1140)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +.|.|||+++||++ ++..+|||+++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999986 45999999999986 67889999999984 278888999
Q ss_pred CCc
Q 001146 779 LGR 781 (1140)
Q Consensus 779 ~~~ 781 (1140)
+++
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 864
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-43 Score=382.77 Aligned_cols=213 Identities=20% Similarity=0.258 Sum_probs=185.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 89999999983 24689999999999999999999999999999999998774 4899999998764
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCccc-cc
Q 001146 622 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPL-RQ 683 (1140)
Q Consensus 622 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~ 683 (1140)
. ...++.++||+|++.+++.+||+||+.++. ..+ ....++.+++++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123567999999999999999999999864 332 22344455678999999999887 77
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 684 ~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
..+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.++||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 654 579999999999999999999999999999999999999999999999877999999999986 57789999
Q ss_pred EEEEecCCEEEEECCC
Q 001146 764 LFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 764 v~~l~~gg~~~~~g~~ 779 (1140)
+++|++ |+++..|++
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 899999985
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-42 Score=378.48 Aligned_cols=214 Identities=23% Similarity=0.323 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 489999999983 24689999999999999999999999999999999998774 489999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 621 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 621 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
.. ...++.++|++|++.+++.+||+||+.+...... ...++.+++++++++.++|.+..+..+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998764431 233444456889999999998877764 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++..+||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999975 56678999999985 89999987
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 5
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-42 Score=393.54 Aligned_cols=217 Identities=24% Similarity=0.367 Sum_probs=190.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|++++|+ +++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+
T Consensus 13 ~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred ceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEE
Confidence 4689999999872 123489999999999999999999999999999999998874 48999999988
Q ss_pred cCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 620 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 620 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
+.. ...++.++||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ .+|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 743 234577999999999999999999999987654 2345555677899999999998888764 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
||||+|||||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++..|
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g 228 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998754 999999999986 67889999999985 8999999
Q ss_pred CCC
Q 001146 778 PLG 780 (1140)
Q Consensus 778 ~~~ 780 (1140)
+++
T Consensus 229 ~~~ 231 (355)
T 1z47_A 229 TPE 231 (355)
T ss_dssp CHH
T ss_pred CHH
Confidence 874
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1e-42 Score=381.67 Aligned_cols=218 Identities=25% Similarity=0.287 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|. ++++|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 489999999983 24689999999999999999999999999999999998774 489999999886
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHc-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 001146 621 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSP---------EVDSETRKMFIDEVMELVELNPLRQSLV 686 (1140)
Q Consensus 621 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 686 (1140)
... ..++.++||+|++.+++.+||+||+.++... +... ....++.+++++++++.+++.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999999999999999986532 1110 0122334456889999999988877764
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 687 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 687 g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999877999999999997 57789999999
Q ss_pred EecCCEEEEECCCC
Q 001146 767 MKRGGQEIYVGPLG 780 (1140)
Q Consensus 767 l~~gg~~~~~g~~~ 780 (1140)
|++ |++++.|+++
T Consensus 226 l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MFN-GQIIAEGRGE 238 (257)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEeCHH
Confidence 985 8999999874
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-42 Score=393.74 Aligned_cols=214 Identities=24% Similarity=0.346 Sum_probs=187.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 78999999883 24689999999999999999999999999999999998874 4899999998874
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+... ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2233444567899999999998888764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 219 ~ 219 (359)
T 2yyz_A 219 D 219 (359)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-42 Score=393.47 Aligned_cols=214 Identities=26% Similarity=0.388 Sum_probs=188.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 78999998873 24589999999999999999999999999999999998774 4899999998874
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999987654 2345555677899999999998887764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998754 999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 219 ~ 219 (362)
T 2it1_A 219 D 219 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.8e-42 Score=393.46 Aligned_cols=215 Identities=26% Similarity=0.345 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|. ++++|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEEC
Confidence 378999999883 24689999999999999999999999999999999998874 489999999876
Q ss_pred Cc-------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 621 KQ-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----cc
Confidence 32 123567999999999999999999999987654 2345555677899999999998887764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~ 217 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 67889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|++.
T Consensus 218 i~~~g~~~ 225 (372)
T 1g29_1 218 LQQVGSPD 225 (372)
T ss_dssp EEEEECHH
T ss_pred EEEeCCHH
Confidence 99999874
No 20
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=419.73 Aligned_cols=201 Identities=17% Similarity=0.192 Sum_probs=160.3
Q ss_pred eeeeCceEEEeCc-----eEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCC
Q 001146 568 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 642 (1140)
Q Consensus 568 ~iL~~vs~~i~~G-----~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 642 (1140)
.+++|+|+++++| |+++|+||||||||||+++|+|..++. +|+ ... +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCc------Ccc----CCcEEEecccccccCCc
Confidence 3688999999988 789999999999999999999987643 453 111 24589999987666668
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
||+|++... .+. .... ...++++++.+++.+..+..+ ..|||||||||+|||||+.+|++|||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987542 221 1111 234678899999998877764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEECCCCcchhHHHHHHhhC
Q 001146 723 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGRHSCHLISYFEAI 793 (1140)
Q Consensus 723 gLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~~~~~~~~~~~f~~~ 793 (1140)
|||+.++..+.+.|++++ +.|.|||++|||++ ++..++||+++|++ .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 67889999999984 278999999975433333344443
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-42 Score=373.09 Aligned_cols=214 Identities=22% Similarity=0.328 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|. ++++|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 489999999984 24689999999999999999999999999999999998774 489999999887
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCC
Q 001146 621 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLS 695 (1140)
Q Consensus 621 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~LS 695 (1140)
... . .++.++|++|++.+++.+||+||+.+..... ...++.++.++++++.++ +.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 431 1 2345999999999999999999999864211 111233455788899994 87776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999975 57789999999985 89999
Q ss_pred ECCCC
Q 001146 776 VGPLG 780 (1140)
Q Consensus 776 ~g~~~ 780 (1140)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 98763
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.8e-42 Score=378.81 Aligned_cols=214 Identities=24% Similarity=0.315 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|+++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 589999999884 35689999999999999999999999999999999998774 379999999987
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG 697 (1140)
.. ...++.++|++|++.+++.+||+||+.++..... ..+.+++++++++.+++.+..+..+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 2345679999999988888999999998754321 1123455789999999998877764 579999
Q ss_pred HHHHHHHHHHHhh------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 698 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 698 qrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
|||||+|||||+. +|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++|||+++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57789999999985
Q ss_pred CEEEEECCCCc
Q 001146 771 GQEIYVGPLGR 781 (1140)
Q Consensus 771 g~~~~~g~~~~ 781 (1140)
|++++.|++++
T Consensus 224 G~i~~~g~~~~ 234 (266)
T 4g1u_C 224 GKLVACGTPEE 234 (266)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEEcCHHH
Confidence 89999999754
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.1e-42 Score=393.11 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 89999999983 24689999999999999999999999999999999998874 4899999998874
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999875332 2345556677899999999998887764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998765 999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
.
T Consensus 227 ~ 227 (372)
T 1v43_A 227 T 227 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.4e-42 Score=392.81 Aligned_cols=214 Identities=27% Similarity=0.374 Sum_probs=187.7
Q ss_pred EEEEeEEEEEecCchhhhcccccCcee--eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
++++|++++|. +++ +|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|++
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 78999999984 123 89999999999999999999999999999999998774 48999999987
Q ss_pred cCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 001146 620 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 693 (1140)
Q Consensus 620 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 693 (1140)
+.. ...++.+|||+|+..++|.+||+||+.|+...+ ....++.+++++++++.++|.+..+..+ ++
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 632 234677999999999999999999999976443 2345555677899999999998888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998654 999999999986 68889999999985 89
Q ss_pred EEEECCCC
Q 001146 773 EIYVGPLG 780 (1140)
Q Consensus 773 ~~~~g~~~ 780 (1140)
++..|+++
T Consensus 219 i~~~g~~~ 226 (353)
T 1oxx_K 219 LVQVGKPE 226 (353)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 99999874
No 25
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.5e-42 Score=431.66 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=155.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|+. .++++|+|+|+++++||+++|+||||||||||+|+|+|...+ .+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--
T ss_pred eEEEEeeEEEeCC-----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEcCc--
Confidence 4889999998841 124589999999999999999999999999999999998774 3899999863
Q ss_pred CcccccceEEEeccCCCC----CCCCCHHHHHHHHHHcc------------CC---------------------------
Q 001146 621 KQETFARISGYCEQNDIH----SPFVTIYESLLFSAWLR------------LS--------------------------- 657 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~----~~~lTv~e~l~~~~~~~------------~~--------------------------- 657 (1140)
..++|++|++.+ ....|++|++.+..... ..
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136788776421 12356777665421000 00
Q ss_pred -------------------------CCCC----------------------------------HHHHHHHHHHHHHHcCC
Q 001146 658 -------------------------PEVD----------------------------------SETRKMFIDEVMELVEL 678 (1140)
Q Consensus 658 -------------------------~~~~----------------------------------~~~~~~~~~~~l~~~~l 678 (1140)
...+ ....++.++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 0000 00012457889999999
Q ss_pred ccc--ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 679 NPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 679 ~~~--~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
.+. .+.. +++|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCC-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 742 3444 3579999999999999999999999999999999999999999888654 679999999975 5
Q ss_pred HHHhhceEEEEecCCEEEEECC
Q 001146 757 IFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 757 ~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
+.++||++++|.+ |+++..|+
T Consensus 961 v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBT-TBCCC---
T ss_pred HHHhCCEEEEEEC-CEEEEeCC
Confidence 6678999999985 78887775
No 26
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-41 Score=423.36 Aligned_cols=195 Identities=26% Similarity=0.297 Sum_probs=141.4
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhc---------------CCc--C--ceEEEEEEEcCcccCcccc----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---------------RKT--G--GYITGNITISGYPKKQETF---- 625 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g---------------~~~--~--~~~~G~i~~~g~~~~~~~~---- 625 (1140)
+|+|||++|++||++||+||||||||||+++|.+ ... . ....|.+.+++.+......
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~ 416 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 416 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence 6999999999999999999999999999987641 000 0 0123567777766431100
Q ss_pred ----------------------------------------cceEEEeccCCCCC--------------------------
Q 001146 626 ----------------------------------------ARISGYCEQNDIHS-------------------------- 639 (1140)
Q Consensus 626 ----------------------------------------~~~~~~v~q~~~~~-------------------------- 639 (1140)
.+..|++.|+..++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (670)
T 3ux8_A 417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 496 (670)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence 00112233322221
Q ss_pred ------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 001146 640 ------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712 (1140)
Q Consensus 640 ------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p 712 (1140)
..+||+||+.+... . .. .++..+.++.+++... .+.. +..|||||||||+|||||+.+|
T Consensus 497 ~~~~~~~~ltv~e~l~~~~~------~-~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 497 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BCHHHHHTSBHHHHHHHTTT------C-HH--HHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHhhCCHHHHHHHHHH------h-hh--HHHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHHhhCC
Confidence 24799999987431 1 11 2234677888888642 3433 3579999999999999999887
Q ss_pred ---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCC
Q 001146 713 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 713 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ..+.|||+++|. ++|++++.|++
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 599999999999999999999999999888999999999975 457799999993 35899999986
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8.2e-42 Score=386.71 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=183.4
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. ++ +|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 67899998873 24 89999999999999999999999999999999998874 4899999998874
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.+|||+|++.++|.+||+||+.|+...+.. ..+ ++++++++.++|.+..+..+ ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998754321 111 45789999999998888764 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.+ .|.|+|++||+++ ++..++||+++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999986 67889999999985 899999987
Q ss_pred C
Q 001146 780 G 780 (1140)
Q Consensus 780 ~ 780 (1140)
+
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.6e-41 Score=368.98 Aligned_cols=219 Identities=26% Similarity=0.273 Sum_probs=176.0
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++||+++|. ++++|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78999999983 24689999999999999999999999999999999997211256899999998864
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCc-CC
Q 001146 622 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPGVSG-LS 695 (1140)
Q Consensus 622 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~g~~~~~~-LS 695 (1140)
.. . .++.++|++|++.+++.+||+||+.+.............+.+++++++++.+++ .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 1 134589999999999999999999886532111112233344568899999999 47777653 45 99
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecCCEEE
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQEI 774 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg~~~ 774 (1140)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998767999999999986 45556 599999985 8999
Q ss_pred EECCCC
Q 001146 775 YVGPLG 780 (1140)
Q Consensus 775 ~~g~~~ 780 (1140)
..|+++
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 999863
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.3e-41 Score=376.75 Aligned_cols=213 Identities=24% Similarity=0.331 Sum_probs=176.3
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+|+|+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCE
Confidence 45799999999985 124589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++.. ....+ .++++++.+++.+ -.++.+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAGND----EVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCCHH----HHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCCHH----HHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8754 345778999999998885 699999998632 12222 2445555555543 23455554
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. ...|||||||||+|||||+++|+||||||||||||+.++..+++.|+++.+ ++|+|+++|+++ .+ ..+|+|++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TV-VNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HH-HTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HH-HcCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999864 799999999986 34 4599999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 263 ~-G~iv~~G~~~ 273 (306)
T 3nh6_A 263 D-GCIVERGRHE 273 (306)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-41 Score=365.96 Aligned_cols=208 Identities=20% Similarity=0.305 Sum_probs=179.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|. + +|+|+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 57899999883 1 49999999999 99999999999999999999998774 4899999998864
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
. ...++.++|++|++.+++.+||+||+.+....+ .....+++++++++.+++.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567999999999999999999998864321 11222556889999999988777664 579999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999975 57789999999985 899999985
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-41 Score=371.86 Aligned_cols=217 Identities=22% Similarity=0.329 Sum_probs=181.2
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.... ...+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 78999999984100 0015689999999999999999999999999999999998774 4899999998875
Q ss_pred cccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCcCCHHH
Q 001146 622 QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~~~~~LSgGq 698 (1140)
....++.++||+|++ ..++.+||+||+.+...... ..++.+++++++++.++|. +..+..+ +.|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 334566799999985 46677999999998643221 1111234578899999998 7777664 5799999
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++ |+++..|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999767999999999987 56778999999985 89999987
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 5
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-40 Score=366.93 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999999983 2468999999999999999999999999999999999742225689999999876
Q ss_pred Ccc---cc-cceEEEeccCCCCCCCCCHHHHHHHHHH-c---cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 001146 621 KQE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAW-L---RLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 691 (1140)
Q Consensus 621 ~~~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 691 (1140)
... .. ++.++|++|++.+++.+||.|++.+... . ......+.++.+++++++++.+++. +..+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 3358999999999999999999987542 1 1111223444456788999999996 45565431
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hceEEEEecC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 770 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 770 (1140)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999985
Q ss_pred CEEEEECCCC
Q 001146 771 GQEIYVGPLG 780 (1140)
Q Consensus 771 g~~~~~g~~~ 780 (1140)
|++++.|+++
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 8999999874
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.1e-41 Score=374.12 Aligned_cols=218 Identities=23% Similarity=0.379 Sum_probs=180.7
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 3589999999984 24689999999999999999999999999999999998774 48999999987
Q ss_pred cC--c---ccccceEEEeccCCCCC--CCCCHHHHHHHHHHcc--CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 001146 620 KK--Q---ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 690 (1140)
Q Consensus 620 ~~--~---~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 690 (1140)
+. . ...++.++|++|++.+. +.+||+||+.++.... ...... ++.+++++++++.+++.+..+..+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID-DEIRNEAHQLLKLVGMSAKAQQYI---- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CC-HHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCc-HHHHHHHHHHHHHcCChhHhcCCh----
Confidence 64 2 23456799999987543 3569999998753210 001112 233456789999999988877764
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEE--EEEecCCCHHHHHhhceEEEEe
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|| |++||+++ ++.+.||++++|+
T Consensus 160 -~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 160 -GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK 237 (279)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE
Confidence 5799999999999999999999999999999999999999999999997669999 99999986 5678899999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |++++.|+++
T Consensus 238 ~-G~i~~~g~~~ 248 (279)
T 2ihy_A 238 D-GQSIQQGAVE 248 (279)
T ss_dssp T-TEEEEEEEHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
No 34
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.5e-40 Score=358.16 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-++++|++++|.. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE------
Confidence 3889999999830 23589999999999999999999999999999999998774 389997
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.++.++|++|++.+++.+||+||+.++...... ......+.+++++++++.+++.+..+..+ ..||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 245699999999999899999999986432110 00111233456789999999998877653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999776 999999999986 56789999999985 78 88887
Q ss_pred CC
Q 001146 779 LG 780 (1140)
Q Consensus 779 ~~ 780 (1140)
++
T Consensus 212 ~~ 213 (253)
T 2nq2_C 212 TR 213 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 35
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.4e-40 Score=409.44 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=145.3
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHH---------HHHhcCCc-C---ceEEE------EEEEcCcccCccc-----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-G---GYITG------NITISGYPKKQET----- 624 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl---------~~l~g~~~-~---~~~~G------~i~~~g~~~~~~~----- 624 (1140)
.|+|||+++++|++++|+||||||||||+ +.+.+... . ....| .+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 49999999999999999999999999997 34444211 1 12233 3555554431100
Q ss_pred ---------------------------------------ccceEEEeccCCCCCC-------------------------
Q 001146 625 ---------------------------------------FARISGYCEQNDIHSP------------------------- 640 (1140)
Q Consensus 625 ---------------------------------------~~~~~~~v~q~~~~~~------------------------- 640 (1140)
..+..|++.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012366666655544
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC-
Q 001146 641 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 712 (1140)
Q Consensus 641 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p- 712 (1140)
.+||.|++.|... . ....++.++++.+||.... .+. ....|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq-~~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQ-PATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTC-CSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccC-CccCCCHHHHHHHHHHHHHhhCCC
Confidence 3688888877421 1 1223467889999996432 122 23579999999999999999875
Q ss_pred --cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 713 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 713 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. +||++++.|+++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999999999888999999999974 456799999993 479999999974
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.4e-40 Score=359.98 Aligned_cols=213 Identities=26% Similarity=0.418 Sum_probs=175.7
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 5 ~~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~ 71 (247)
T 2ff7_A 5 HHDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGH 71 (247)
T ss_dssp CEEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred cCceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 357999999998831 134689999999999999999999999999999999998774 4899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++. + .... +.++++++.+++.+..+.. .+.
T Consensus 72 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 141 (247)
T 2ff7_A 72 DLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGE 141 (247)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCST
T ss_pred EhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhC
Confidence 8643 234567999999998886 69999998752 1 1222 2356777888887654432 222
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.||++++|+
T Consensus 142 -~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~ 217 (247)
T 2ff7_A 142 -QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVME 217 (247)
T ss_dssp -TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEE
T ss_pred -CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 246799999999999999999999999999999999999999999999985 5999999999986 34 5699999998
Q ss_pred cCCEEEEECCC
Q 001146 769 RGGQEIYVGPL 779 (1140)
Q Consensus 769 ~gg~~~~~g~~ 779 (1140)
+ |+++..|++
T Consensus 218 ~-G~i~~~g~~ 227 (247)
T 2ff7_A 218 K-GKIVEQGKH 227 (247)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 899999985
No 37
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.7e-40 Score=359.09 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=176.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++ ++|+|+|+++++||+++|+||||||||||+|+|+|..+ +. |+|.++|.++.
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 788888864 26999999999999999999999999999999999877 45 99999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 698 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq 698 (1140)
. ...++.++|++|++.+++.+||+||+.+... . ... +++++++++.+++.+..+..+ ..|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 2 2345679999999999999999999987521 1 112 345789999999988777653 5799999
Q ss_pred HHHHHHHHHHhhCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 699 RKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 699 rqRv~ia~al~~~p~-------illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
|||++|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G 209 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-G 209 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-T
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999 99999999999999999999999999767999999999976 56789999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 210 ~i~~~g~~~ 218 (249)
T 2qi9_C 210 KMLASGRRE 218 (249)
T ss_dssp EEEEEEEHH
T ss_pred EEEEeCCHH
Confidence 999999864
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-40 Score=352.17 Aligned_cols=199 Identities=20% Similarity=0.282 Sum_probs=171.6
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.-++++|++++|. + ++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 9 ~~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~ 72 (214)
T 1sgw_A 9 SKLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP 72 (214)
T ss_dssp CEEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred ceEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEE
Confidence 3589999999873 2 589999999999999999999999999999999998774 48999999988
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.. ..++.++|++|++.+++.+||+||+.+....+.. ... +++++++++.+++.+. +.. +..||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKK-----LGELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHH
Confidence 65 3567799999999999999999999987654321 111 2347889999999876 554 357999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++++.
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 9999999999999999999999999999999999999998767899999999997 5777889888764
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2e-40 Score=365.42 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=174.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|... +++++|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 59999999988410 124589999999999999999999999999999999998774 489999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC-HH----HHHHHHHHHHHHc--CCcccccccccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD-SE----TRKMFIDEVMELV--ELNPLRQSLVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~----~~~~~~~~~l~~~--~l~~~~~~~~g~~~ 690 (1140)
.. ..+++.++||+|++.+++ .||+||+.++.... .. .+ ..+..++++++.+ ++.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 59999998853211 11 11 1122345667777 566555544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ +|+|||++||+++ ....||++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 4899999999975 3456999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|+++
T Consensus 232 -G~i~~~g~~~ 241 (271)
T 2ixe_A 232 -GSVCEQGTHL 241 (271)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 8999999863
No 40
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.3e-39 Score=398.48 Aligned_cols=195 Identities=29% Similarity=0.371 Sum_probs=147.5
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHh-c----C-----CcCc---eEEE------EEEEcCcccCccc-----
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NITISGYPKKQET----- 624 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~----- 624 (1140)
.|+|||++|++||+++|+|+||||||||+++|. | . ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 499999999999999999999999999999863 2 1 1222 2344 5888887753100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 001146 625 -----------------FARISGYCEQNDIHS----------------------P------------------------- 640 (1140)
Q Consensus 625 -----------------~~~~~~~v~q~~~~~----------------------~------------------------- 640 (1140)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 012346666632211 1
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 001146 641 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712 (1140)
Q Consensus 641 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p 712 (1140)
.+||.|++.|... . .. ..++.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3688888876321 1 11 123467899999976 44444 3579999999999999999865
Q ss_pred ---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCC
Q 001146 713 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 713 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
++|||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 357899999994 36899999986
No 41
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-39 Score=354.80 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=174.5
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|+ +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 67899998873 123589999999999999999999999999999999998774 3799999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCCC
Q 001146 622 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPGV 691 (1140)
Q Consensus 622 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------g~~~~ 691 (1140)
. ..+++.++|++|++.+++ .||+||+.++.. ..... +.++++++.+++.+..+... +. ..
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCCH----HHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 235677999999998887 599999987421 11222 23678888889887665432 22 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999987 6999999999975 3456999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 214 ~i~~~g~~~ 222 (243)
T 1mv5_A 214 QITGSGKHN 222 (243)
T ss_dssp EECCCSCHH
T ss_pred EEEEeCCHH
Confidence 999888764
No 42
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.4e-38 Score=395.29 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q 001146 667 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 742 (1140)
Q Consensus 667 ~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~ 742 (1140)
+++.++++.++|... .+.. +..|||||||||+||++|+.+ |+||+|||||+|||+.+...+.+.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357889999999763 3433 357999999999999999996 7999999999999999999999999999888
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCC
Q 001146 743 GRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 779 (1140)
Q Consensus 743 g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 779 (1140)
|.|||+++|+++ .+ +.+|++++|. ++|++++.|++
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999975 34 8899999994 46899999986
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8e-39 Score=350.01 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=173.8
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|... ...+++|+|+|++++ ||+++|+||||||||||+++|+|.. +. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 6789999998510 012468999999999 9999999999999999999999987 54 899999998764
Q ss_pred cccccceEE-EeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHH
Q 001146 622 QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 622 ~~~~~~~~~-~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgGqr 699 (1140)
....++.++ |++|++.+ .+||+||+.+..... ... +++++++++.+++. +..+..+ ..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 311256789 99999877 799999999876443 111 23478899999998 7777653 57999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc-eEEEEecCCEEEEECC
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~v~~l~~gg~~~~~g~ 778 (1140)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||+++ .+.+.|| ++++|++ |+++..|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999986 5678899 9999985 89999998
Q ss_pred C
Q 001146 779 L 779 (1140)
Q Consensus 779 ~ 779 (1140)
+
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 6
No 44
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.2e-38 Score=393.69 Aligned_cols=196 Identities=27% Similarity=0.350 Sum_probs=144.7
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHh-c----CC-----cCce---EEE------EEEEcCcccCcc---c--
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGGY---ITG------NITISGYPKKQE---T-- 624 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~-g----~~-----~~~~---~~G------~i~~~g~~~~~~---~-- 624 (1140)
+|+|||++|++||+++|+|+||||||||+++|. | .. .++. ..| .+.+++.++... +
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 499999999999999999999999999999853 2 11 1221 123 356666654210 0
Q ss_pred -----------------ccceEEEeccCCCC----------------------CC-------------------------
Q 001146 625 -----------------FARISGYCEQNDIH----------------------SP------------------------- 640 (1140)
Q Consensus 625 -----------------~~~~~~~v~q~~~~----------------------~~------------------------- 640 (1140)
..+..||++|...+ .+
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 01223566553211 11
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 001146 641 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712 (1140)
Q Consensus 641 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p 712 (1140)
.+||.|++.|... . .. ..++.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3577888776321 1 11 123467899999976 34443 3579999999999999999865
Q ss_pred ---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCC
Q 001146 713 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 780 (1140)
Q Consensus 713 ---~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 780 (1140)
++|||||||+|||+.+...+.+.|++++++|.|||+++|++. ..+.+|++++|. ++|++++.|+++
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999975 357899999994 468999999863
No 45
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6e-39 Score=351.76 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=171.4
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++||+++|... ..+++|+|+|+++++||+++|+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48999999988421 11358999999999999999999999999999999999875 3 79999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 001146 621 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPG 690 (1140)
Q Consensus 621 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 690 (1140)
.. ...++.++||+|++.+++ .||+||+.++.. .... +.+.++++.+++.+. .++.++. .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~ 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-K 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-S
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-C
Confidence 43 234667999999998886 699999987421 1122 224566666666543 2333332 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 691 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
...|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999864 8999999999863 4 56999999985
Q ss_pred CEEEEECCC
Q 001146 771 GQEIYVGPL 779 (1140)
Q Consensus 771 g~~~~~g~~ 779 (1140)
|+++..|++
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999986
No 46
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=367.65 Aligned_cols=213 Identities=20% Similarity=0.271 Sum_probs=177.4
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++.+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSC
T ss_pred CCeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCE
Confidence 346999999999841 23468999999999999999999999999999999999864 4799999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------C
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------P 689 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~------~ 689 (1140)
++.. ...++.++||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..+..... .
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 8753 234678999999999988 69999996321 112 23467899999998776665321 1
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 690 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 690 ~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
....|||||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. +++|+|+++|+++ ....+||+++|++
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 123499999999999999999999999999999999999999999998864 5899999999974 4567999999985
Q ss_pred CCEEEEECCCC
Q 001146 770 GGQEIYVGPLG 780 (1140)
Q Consensus 770 gg~~~~~g~~~ 780 (1140)
|+++..|++.
T Consensus 229 -G~i~~~g~~~ 238 (390)
T 3gd7_A 229 -NKVRQYDSIL 238 (390)
T ss_dssp -TEEEEESSHH
T ss_pred -CEEEEECCHH
Confidence 8999999874
No 47
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-37 Score=383.23 Aligned_cols=219 Identities=27% Similarity=0.372 Sum_probs=181.1
Q ss_pred CcE-EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 539 PHS-LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 539 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
... ++++||+++|+.. .++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||
T Consensus 338 ~~~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g 405 (595)
T 2yl4_A 338 FQGALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDG 405 (595)
T ss_dssp CCCCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC--SEEEEEETT
T ss_pred CCCeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECC
Confidence 346 9999999998521 124689999999999999999999999999999999998874 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g 687 (1140)
.++.. ..+++.++||+|++.+++ .||+||+.++...+ ...++ +.++++++.+++.+. .|+.+|
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~ 478 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVG 478 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCS
T ss_pred EEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccCH----HHHHHHHHHcCCHHHHHhCccccccccc
Confidence 98753 345678999999999887 59999999853210 11222 336777888776543 466666
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..+ .+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|+++|+++ ..+.+|++++|
T Consensus 479 ~~~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l 554 (595)
T 2yl4_A 479 EKG-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVL 554 (595)
T ss_dssp SSS-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEE
T ss_pred CCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEE
Confidence 543 57999999999999999999999999999999999999999999999866 899999999975 34669999999
Q ss_pred ecCCEEEEECCCCc
Q 001146 768 KRGGQEIYVGPLGR 781 (1140)
Q Consensus 768 ~~gg~~~~~g~~~~ 781 (1140)
++ |+++..|++++
T Consensus 555 ~~-G~i~~~g~~~~ 567 (595)
T 2yl4_A 555 DQ-GKITEYGKHEE 567 (595)
T ss_dssp ET-TEEEEEECSCC
T ss_pred EC-CEEEEECCHHH
Confidence 85 89999999764
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.6e-38 Score=337.99 Aligned_cols=200 Identities=23% Similarity=0.380 Sum_probs=158.6
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
++++|++++|.. +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 789999998841 12458999999999999999999999999999999999887 5689999998
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc------cc-ccccccCCCCCcC
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PL-RQSLVGLPGVSGL 694 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~-~~~~~g~~~~~~L 694 (1140)
.++||+|++.+ +.+||+||+.+.... ..+. .+++++.+++. +. .++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY----YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH----HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH----HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 578999999875321 1111 12233333332 11 1122222 24679
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999873 3 57999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999999863
No 49
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=8.8e-38 Score=336.38 Aligned_cols=200 Identities=22% Similarity=0.340 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.++++|++++|+. +++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 5899999998741 234589999999999999999999999999999999998774 489999998
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCCc
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSG 693 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~~ 693 (1140)
.++|++|++.+++. ||+||+.++.. .... ..+++++.+++.+.. ++.++. ....
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCc
Confidence 38999999988885 99999987421 1111 123344444443322 222332 2457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.+ +++. +|+|||++||+++ . .+.+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~-~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-H-HHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-H-HHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999974 5554 4899999999975 3 456999999985 89
Q ss_pred EEEECCC
Q 001146 773 EIYVGPL 779 (1140)
Q Consensus 773 ~~~~g~~ 779 (1140)
++..|++
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999986
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-38 Score=388.21 Aligned_cols=216 Identities=21% Similarity=0.323 Sum_probs=177.2
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||
T Consensus 338 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESS
T ss_pred CCCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECC
Confidence 3457999999999852 234589999999999999999999999999999999998874 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g 687 (1140)
.++.. ..+++.++||+|++.+++ .||+||+.++. +..++++ +.++++..++. +-.|+.+|
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGR-----EDATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTC-----SSCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccC-----CCCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc
Confidence 98754 345778999999999886 59999998752 1223322 23344444433 34466666
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..+ .+||||||||++|||||+++|++|+||||||+||+.+++.+++.|+++. +|+|+|+++|+++ ....+||+++|
T Consensus 475 ~~~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVL 550 (587)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 543 5699999999999999999999999999999999999999999999874 5899999999975 35689999999
Q ss_pred ecCCEEEEECCCCc
Q 001146 768 KRGGQEIYVGPLGR 781 (1140)
Q Consensus 768 ~~gg~~~~~g~~~~ 781 (1140)
++ |+++..|++++
T Consensus 551 ~~-G~i~~~g~~~e 563 (587)
T 3qf4_A 551 HE-GKVAGFGTHKE 563 (587)
T ss_dssp ET-TEEEEEECHHH
T ss_pred EC-CEEEEECCHHH
Confidence 85 89999999753
No 51
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.3e-38 Score=387.75 Aligned_cols=214 Identities=25% Similarity=0.386 Sum_probs=177.1
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
+..++++||+|+|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 457999999999852 234589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++. ||+||+.++. +..+++ .+.++++..++. +-.|+.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8754 3456789999999998875 9999998752 122222 244555555543 334566665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ .+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +++|+|+++|+++. .+.+||+++|+
T Consensus 474 ~g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 43 5699999999999999999999999999999999999999999999875 47999999999873 45699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 550 ~-G~i~~~g~~~ 560 (578)
T 4a82_A 550 N-GHIVETGTHR 560 (578)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
No 52
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.5e-37 Score=381.34 Aligned_cols=215 Identities=23% Similarity=0.304 Sum_probs=178.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCE
Confidence 357999999999952 114589999999999999999999999999999999998774 4899999998
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++.. +..++ +.++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 8643 346778999999999887 599999988531 12222 236677777777654 3455554
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. ...||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++.+ |+|+|+++|+++ ..+.+|++++|+
T Consensus 477 ~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 N-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVD 552 (582)
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999864 999999999986 345799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b5x_A 553 E-GEIIERGRHA 563 (582)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999864
No 53
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.6e-37 Score=380.99 Aligned_cols=215 Identities=22% Similarity=0.293 Sum_probs=179.2
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
...++++||+++|+. +++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~ 405 (582)
T 3b60_A 339 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGH 405 (582)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTE
T ss_pred CCcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCE
Confidence 356999999999851 114589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++.. ...++ +.++++++.+++.+. .|+.+|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCCH----HHHHHHHHHcCCHHHHHhccccccccccC
Confidence 8753 345678999999999887 599999988531 12222 236677887777643 3555665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
. ...||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||++++|+
T Consensus 477 ~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~ 552 (582)
T 3b60_A 477 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVE 552 (582)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEE
Confidence 4 357999999999999999999999999999999999999999999999865 9999999999863 45799999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 553 ~-G~i~~~g~~~ 563 (582)
T 3b60_A 553 D-GIIVERGTHS 563 (582)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
No 54
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-38 Score=388.79 Aligned_cols=213 Identities=25% Similarity=0.387 Sum_probs=174.9
Q ss_pred CcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 539 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+.++++||+|+|+. ++++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 352 ~~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCE
Confidence 457999999998841 23589999999999999999999999999999999998874 4899999999
Q ss_pred ccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 001146 619 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 688 (1140)
Q Consensus 619 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~ 688 (1140)
++.. ..+++.++||+|++.+++ .||+||+.++. + ..+++ .++++++..++.+ -.++.+|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8754 346778999999998886 69999998752 1 11221 1345555555543 23444443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.+ .+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|++++|+
T Consensus 488 ~g-~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 NG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp HH-TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 32 4699999999999999999999999999999999999999999999985 59999999999973 4 5699999998
Q ss_pred cCCEEEEECCCC
Q 001146 769 RGGQEIYVGPLG 780 (1140)
Q Consensus 769 ~gg~~~~~g~~~ 780 (1140)
+ |+++..|+++
T Consensus 564 ~-G~i~~~g~~~ 574 (598)
T 3qf4_B 564 D-GEIVEMGKHD 574 (598)
T ss_dssp S-SSEEECSCHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999874
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4e-36 Score=397.92 Aligned_cols=217 Identities=28% Similarity=0.383 Sum_probs=184.6
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.++.++|+||+|+|+.+ .++++|+|+|+++++||.+||+||||||||||+++|.|..++ .+|+|.+||
T Consensus 412 ~~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG 479 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDG 479 (1321)
T ss_dssp CCCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETT
T ss_pred CCCcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCC
Confidence 34679999999999743 235689999999999999999999999999999999998874 589999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------ccccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~g 687 (1140)
.+++. ..+|+.++||+|++.++. .|++||+.|+. +..++++ +.++++..++ .+-.||.+|
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITREE----MVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred ccchhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccchHHH----HHHHHHHccchhHHHcCCCCCccEec
Confidence 98764 457788999999999886 79999999862 2334332 4555555543 455788899
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..|. .||||||||++||||+++||+||+||||||+||+++++.+.+.|+++. +|+|+|+++|+++ ..+.+|+|++|
T Consensus 550 e~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 550 DRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp SSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEE
T ss_pred CCCC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEe
Confidence 8764 599999999999999999999999999999999999999999999876 4899999999987 46889999999
Q ss_pred ecCCEEEEECCCCc
Q 001146 768 KRGGQEIYVGPLGR 781 (1140)
Q Consensus 768 ~~gg~~~~~g~~~~ 781 (1140)
++ |+++..|+.++
T Consensus 626 ~~-G~ive~Gth~e 638 (1321)
T 4f4c_A 626 KN-GQVVEVGDHRA 638 (1321)
T ss_dssp ET-TEEEEEECHHH
T ss_pred eC-CeeeccCCHHH
Confidence 85 89999999753
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.4e-36 Score=393.45 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=177.5
Q ss_pred CCcEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 538 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
..+.++++||+|+|+.+ .+.++|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 384 ~~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g 451 (1284)
T 3g5u_A 384 IQGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDG 451 (1284)
T ss_dssp CCCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETT
T ss_pred CCCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC
Confidence 34679999999999632 124589999999999999999999999999999999998874 489999999
Q ss_pred cccCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------Cccccccccc
Q 001146 618 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVG 687 (1140)
Q Consensus 618 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g 687 (1140)
.++.. ..+|+.++||+|++.+++. ||+||+.++.. ..+.++ ++++++..+ +.+-.|+.+|
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhcccccccccc
Confidence 98754 3467789999999999875 99999998731 223332 233333333 2344577777
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 688 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 688 ~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
..+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.++++. +|+|+|+++|+++ ....+|+|++|
T Consensus 522 ~~g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl 597 (1284)
T 3g5u_A 522 ERG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGF 597 (1284)
T ss_dssp SSS-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEEC
T ss_pred CCC-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEE
Confidence 654 4699999999999999999999999999999999999999999998864 5999999999976 34569999999
Q ss_pred ecCCEEEEECCCC
Q 001146 768 KRGGQEIYVGPLG 780 (1140)
Q Consensus 768 ~~gg~~~~~g~~~ 780 (1140)
++ |++++.|+.+
T Consensus 598 ~~-G~i~~~g~~~ 609 (1284)
T 3g5u_A 598 DG-GVIVEQGNHD 609 (1284)
T ss_dssp SS-SCCCCEECHH
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999974
No 57
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.3e-35 Score=327.09 Aligned_cols=197 Identities=23% Similarity=0.356 Sum_probs=147.8
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..++++|+++.+ +++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 39 ~~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-- 99 (290)
T ss_dssp -----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--
T ss_pred ceEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--
Confidence 358889988742 247999999999999999999999999999999999877 5689999988
Q ss_pred cCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCC
Q 001146 620 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVS 692 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~ 692 (1140)
.++|++|++.+++. ||+||+. +. . .... .+++.++.+++.+.. ++.++. ...
T Consensus 100 --------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~ 158 (290)
T 2bbs_A 100 --------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGI 158 (290)
T ss_dssp --------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----C
T ss_pred --------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccC
Confidence 38999999988884 9999997 31 1 1111 123444555554322 222222 235
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 001146 693 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 771 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 771 (1140)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.+ +++. +|+|||++||+++ ....||++++|++ |
T Consensus 159 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G 234 (290)
T 2bbs_A 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-G 234 (290)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999874 4554 4899999999975 3456999999985 8
Q ss_pred EEEEECCCC
Q 001146 772 QEIYVGPLG 780 (1140)
Q Consensus 772 ~~~~~g~~~ 780 (1140)
+++..|+++
T Consensus 235 ~i~~~g~~~ 243 (290)
T 2bbs_A 235 SSYFYGTFS 243 (290)
T ss_dssp EEEEEECHH
T ss_pred eEEEeCCHH
Confidence 999999864
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=9.5e-30 Score=318.37 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=159.0
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
..+...|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+| |++ +|.+
T Consensus 434 ~~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~ 490 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFP 490 (986)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCC
T ss_pred ceeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCc
Confidence 4677788988873 3568999999999999999999999999999999995 111 3433
Q ss_pred cCcccccceEEEeccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 001146 620 KKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 697 (1140)
Q Consensus 620 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~LSgG 697 (1140)
... ...++|++|+. .+++.+||.|++.+ ... .. +++++++++.+|+. +..+..+ ..||||
T Consensus 491 ~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGG 552 (986)
T 2iw3_A 491 TQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGG 552 (986)
T ss_dssp CTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHH
T ss_pred ccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHH
Confidence 221 12368999874 67788999999975 111 11 34578899999994 5566654 469999
Q ss_pred HHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 001146 698 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 776 (1140)
Q Consensus 698 qrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 776 (1140)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++ .|.|+|+++|++. .+.+.||++++|++ |+++ +.
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~ 627 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYK 627 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCC
Confidence 99999999999999999999999999999999999999987 5899999999975 57789999999985 7886 78
Q ss_pred CCCC
Q 001146 777 GPLG 780 (1140)
Q Consensus 777 g~~~ 780 (1140)
|+.+
T Consensus 628 G~~~ 631 (986)
T 2iw3_A 628 GNFT 631 (986)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9863
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=4.2e-31 Score=318.65 Aligned_cols=195 Identities=21% Similarity=0.266 Sum_probs=152.1
Q ss_pred EEE-EeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE-------
Q 001146 542 LTF-DEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI------- 613 (1140)
Q Consensus 542 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i------- 613 (1140)
.++ +||+++|.. ...+|+|+| ++++||+++|+||||||||||+|+|+|...+. +|++
T Consensus 21 ~~~~~~ls~~yg~------------~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~~~~~~~~ 85 (538)
T 1yqt_A 21 EQLEEDCVHRYGV------------NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN--LCGDNDSWDGV 85 (538)
T ss_dssp ---CCCEEEECST------------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSHHHH
T ss_pred hhHhcCcEEEECC------------ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCccCcchhhh
Confidence 344 478887731 123799999 99999999999999999999999999976542 4553
Q ss_pred --EEcCcccCc-----ccccceEEEeccCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc
Q 001146 614 --TISGYPKKQ-----ETFARISGYCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 683 (1140)
Q Consensus 614 --~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 683 (1140)
.++|.+... ...+..+++++|+....+. .|+.|++.... .+++++++++.+|+.+..+
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~ 153 (538)
T 1yqt_A 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLE 153 (538)
T ss_dssp HHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTT
T ss_pred HHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhh
Confidence 345544321 0112357888887544332 38999875310 0123678999999988777
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 684 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 684 ~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
..+ ..|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|.|||+++|++. .+...||+
T Consensus 154 ~~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dr 227 (538)
T 1yqt_A 154 REI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDI 227 (538)
T ss_dssp SBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 664 579999999999999999999999999999999999999999999999878999999999976 67788999
Q ss_pred EEEEec
Q 001146 764 LFLMKR 769 (1140)
Q Consensus 764 v~~l~~ 769 (1140)
+++|.+
T Consensus 228 i~vl~~ 233 (538)
T 1yqt_A 228 IHVVYG 233 (538)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 999974
No 60
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.5e-31 Score=322.17 Aligned_cols=181 Identities=23% Similarity=0.249 Sum_probs=145.8
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE---------EEcCcccCcc-----cccceEEEec
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI---------TISGYPKKQE-----TFARISGYCE 633 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~ 633 (1140)
.+|+|+| ++++||+++|+|||||||||||++|+|...+. +|++ .++|.+.... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4799999 99999999999999999999999999976643 4654 3455543210 1123467888
Q ss_pred cCCCCCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 001146 634 QNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 710 (1140)
Q Consensus 634 q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~ 710 (1140)
|.....+ ..||+|++... .. +++++++++.+||.+..+..+ .+|||||||||+|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~-----~~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDREL-----HQLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBG-----GGCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 8643322 23999998631 10 123678999999998877764 5799999999999999999
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+++ .+..++|++++|.+
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~ 303 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG 303 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence 99999999999999999999999999999877999999999976 56788999999973
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=5.8e-30 Score=319.38 Aligned_cols=206 Identities=21% Similarity=0.285 Sum_probs=134.5
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHH---------------------HHHhcCCcCc--eE---EEEEEEcCccc
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--YI---TGNITISGYPK 620 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~~~g~~~ 620 (1140)
+.+|+||||+|++||+++|+||||||||||+ +++.|...++ .+ .+.+.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3479999999999999999999999999998 6676654432 11 35677777654
Q ss_pred CcccccceEEEeccCCC-------------------CCCCCCHHHHHHHHHHccCCCCCCHHHHH------HHHHHHHHH
Q 001146 621 KQETFARISGYCEQNDI-------------------HSPFVTIYESLLFSAWLRLSPEVDSETRK------MFIDEVMEL 675 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 675 (1140)
.. ..++.+++++|... .++.+||+||+.+...+..... ..+..+ ....++++.
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 32 12334455555432 2356899999987533221110 000000 011235788
Q ss_pred cCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 001146 676 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752 (1140)
Q Consensus 676 ~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 752 (1140)
+||.+. .+..+ ..|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++||+
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888764 45543 5699999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 753 PSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 753 ~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
++ ....||++++|. ++|++++.|++++
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 75 456799999992 3589999998753
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.6e-29 Score=299.96 Aligned_cols=188 Identities=21% Similarity=0.326 Sum_probs=139.4
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEE-----------EcCcccCc---ccccce--EEE
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQ---ETFARI--SGY 631 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~---~~~~~~--~~~ 631 (1140)
..|++++ .+++||+++|+||||||||||||+|+|...+. +|+|. +.|.+... ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3577777 68999999999999999999999999987643 56652 22222110 000111 122
Q ss_pred eccCCCC------CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHH
Q 001146 632 CEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 705 (1140)
Q Consensus 632 v~q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia 705 (1140)
.+|.... -+..++.+++.... ... +++++++++.+++.+..++.+ ..|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------EKS----PEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------CSC----HHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------hhH----HHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHH
Confidence 3332111 12235666554320 111 234788999999998888764 57999999999999
Q ss_pred HHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 001146 706 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 775 (1140)
Q Consensus 706 ~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 775 (1140)
+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++..++|++++|. ||..+|
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~-~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIY-GVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEE-SCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcccc
Confidence 9999999999999999999999999999999999888999999999986 6888999999997 455444
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.8e-28 Score=294.69 Aligned_cols=172 Identities=22% Similarity=0.215 Sum_probs=133.3
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE-----------EEcCcccCcc-----cccceEEEecc----C
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-----------TISGYPKKQE-----TFARISGYCEQ----N 635 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i-----------~~~g~~~~~~-----~~~~~~~~v~q----~ 635 (1140)
..++||++||+||||||||||+|+|+|...+. +|++ .++|.++... .....+....| .
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 35699999999999999999999999987643 5776 4566544210 00112233333 3
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEe
Q 001146 636 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 715 (1140)
Q Consensus 636 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~il 715 (1140)
+.++ ..|++|++.... .+++++++++.+++.+..++.+ +.|||||||||+||+||+.+|++|
T Consensus 99 ~~~~-~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFL-KGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTC-CSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhc-cCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3222 248888664210 0123578899999998888764 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 716 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 716 llDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+|||||++||+.++..+.+.|+++.+ |+|||+++|+++ ++...||++++|.+
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG 212 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecC
Confidence 99999999999999999999999976 999999999986 68889999999974
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.5e-28 Score=283.92 Aligned_cols=197 Identities=14% Similarity=0.069 Sum_probs=149.2
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-E-EEEcCcccCcccccceEEEeccCCC---CCCCCCH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTI 644 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~q~~~---~~~~lTv 644 (1140)
+.++|+++++|++++|+||||||||||+|+|+|...+ .+| + |.++|. .++.++|++|+.. +.+.+|+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3479999999999999999999999999999998763 478 8 999983 2466899999874 4456799
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHH--HhhCCcE----eEEe
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMD 718 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~a--l~~~p~i----lllD 718 (1140)
+||+ |+....... .. ++++.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ ||||
T Consensus 200 ~eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9998 653321111 00 122456677788876654 24799999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC--H---HHHHhhce-----EEEEecCCEEEEECCCCcc----h
Q 001146 719 E-PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPLGRH----S 783 (1140)
Q Consensus 719 E-PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----v~~l~~gg~~~~~g~~~~~----~ 783 (1140)
| ||++||+. ...+.+.+++ .|+|+|+++|+.+ . .+.+++|+ +++|+++|+++ .|++++. .
T Consensus 267 EpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~ 341 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQR 341 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhH
Confidence 9 99999999 5555555543 3789999999986 2 34578999 99998347788 8886532 1
Q ss_pred hHHHHHHhh
Q 001146 784 CHLISYFEA 792 (1140)
Q Consensus 784 ~~~~~~f~~ 792 (1140)
..+.+||..
T Consensus 342 ~~i~~~f~g 350 (460)
T 2npi_A 342 TSIREYFYG 350 (460)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 235567754
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=1.5e-24 Score=256.37 Aligned_cols=203 Identities=18% Similarity=0.148 Sum_probs=141.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcC------------------------------------ceEEEE
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITGN 612 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~------------------------------------~~~~G~ 612 (1140)
+++++|+++++| +++|+|||||||||||++|++...+ ....|.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 589999999999 9999999999999999999653221 011578
Q ss_pred EEEcCcccCcc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHcc-----------------------CCCCC----C
Q 001146 613 ITISGYPKKQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR-----------------------LSPEV----D 661 (1140)
Q Consensus 613 i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-----------------------~~~~~----~ 661 (1140)
+.+||.+.... . .+..+++++|++.+.. .+..+...|.-... ..... .
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999987642 2 2234899999876654 24444433321110 00000 0
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccC----
Q 001146 662 ------------------------------SETRKMFIDEVMELVELNPLR----------------QS---LVGL---- 688 (1140)
Q Consensus 662 ------------------------------~~~~~~~~~~~l~~~~l~~~~----------------~~---~~g~---- 688 (1140)
.+.....+++.++.+++.+.. +. ....
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000112345556666654310 00 0110
Q ss_pred --CCCCc-CCHHHHHHHHHHHHHhhCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 689 --PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 689 --~~~~~-LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||++ ++.+.+|+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~ 364 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHH 364 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCe
Confidence 01122 6999999999999999999 9999999999999999999999999997 599999999996 46788999
Q ss_pred EEEE----ecCCEEEEEC
Q 001146 764 LFLM----KRGGQEIYVG 777 (1140)
Q Consensus 764 v~~l----~~gg~~~~~g 777 (1140)
+++| .+ |+++...
T Consensus 365 i~~l~k~~~~-G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVED-GRTVSHV 381 (415)
T ss_dssp EEEEEEEEET-TEEEEEE
T ss_pred EEEEEEeccC-CceEEEE
Confidence 9999 64 7776553
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=1.8e-25 Score=235.94 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=98.5
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++.+|+|+ ++||+++|+||||||||||+++|+|. ++ .+|+|............++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 445689996 89999999999999999999999998 53 2455421101111123456799999975
Q ss_pred HHHH-HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeC
Q 001146 645 YESL-LFSA----WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 719 (1140)
Q Consensus 645 ~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDE 719 (1140)
+||+ .+.. .+.. ... ++.++++++. + + |||||++|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 3444 2210 1110 001 1124444443 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 720 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 720 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
||+| ++..+.+.|+++ ++|+||| +||+++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888999999888 6689999 999975
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=9.2e-22 Score=226.46 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=74.7
Q ss_pred CCcCCHHHHHHHHHHHHHh------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 691 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.++|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999974 47789999
Q ss_pred EEEecCCEEEE
Q 001146 765 FLMKRGGQEIY 775 (1140)
Q Consensus 765 ~~l~~gg~~~~ 775 (1140)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 78764
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=3.8e-22 Score=226.53 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=74.8
Q ss_pred CCcCCHHHHHHHHHHHHHh----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE--
Q 001146 691 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 764 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v-- 764 (1140)
+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|+|+++|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 6889999999999999999999999999984 5899999999964 67889987
Q ss_pred EEEecCCEEEEECCCC
Q 001146 765 FLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 765 ~~l~~gg~~~~~g~~~ 780 (1140)
++|.+|...+.....+
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 8888766666666553
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=1.3e-22 Score=208.30 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=99.6
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCC-CCCHHHHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLF 650 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~ 650 (1140)
||||++++||+++|+||||||||||++++.+... . +++ .. ..++++|++.... ..++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----DF---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----HH---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----HH---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1 111 11 1256666532110 0112222211
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH---
Q 001146 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 727 (1140)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~--- 727 (1140)
..... ...+.....+.. ...|||||||++||++++.+|++|+|||||++||+.
T Consensus 65 -----------------~~~~~-~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IVSKR-LQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HHHHH-HHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HHHHH-HhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11111 223443333322 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 728 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 728 -------------~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
....+.+.|++++++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889998888777999999999964
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.85 E-value=4.3e-24 Score=246.60 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=135.5
Q ss_pred eeeeeCceEEEeCce--------------------EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCccccc
Q 001146 567 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA 626 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~--------------------~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~ 626 (1140)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|...+. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc----e
Confidence 357999999999999 99999999999999999999987643 688888886543 1
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH--HHHHHHH
Q 001146 627 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 704 (1140)
Q Consensus 627 ~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG--qrqRv~i 704 (1140)
+ ++++|++ .++.+|+.|++.+.. . +..++++++.+++.+..... . |||| ||||+.|
T Consensus 110 ~--~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~------~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 E--RHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI------I-ISATRFKKNDIDI 167 (413)
T ss_dssp C--CEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE------E-EESSCCCHHHHHH
T ss_pred e--EEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE------E-eCCCCccHHHHHH
Confidence 2 6888875 567889999875531 0 12357888888887653221 2 9999 9999999
Q ss_pred HHHHhh----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-----hC----CCEEEEEecCCCH-HHHHhhceE
Q 001146 705 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDEL 764 (1140)
Q Consensus 705 a~al~~----------~p~illlDEPtsgLD~~~~~~v~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~d~v 764 (1140)
|++|+. +|++++|||||+|||+.++.++.+.++++. +. ..++++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999874 22 2678899998762 367778877
Q ss_pred E
Q 001146 765 F 765 (1140)
Q Consensus 765 ~ 765 (1140)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
No 71
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.83 E-value=5e-21 Score=212.95 Aligned_cols=92 Identities=29% Similarity=0.381 Sum_probs=82.2
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
+...+|||||||||+|||||+++|+||+|||||||||+.++..|++.++++. .++|+|++| |+.+++..+|+|++|
T Consensus 186 ~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~it---H~l~~~~~aD~i~vl 261 (306)
T 3nh6_A 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVA---HRLSTVVNADQILVI 261 (306)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEEC---CSHHHHHTCSEEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEE---cChHHHHcCCEEEEE
Confidence 3456799999999999999999999999999999999999999999998864 344455555 788889999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+|+++++
T Consensus 262 ~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 262 KDGCIVERGRHEALLS 277 (306)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.83 E-value=2.4e-24 Score=228.80 Aligned_cols=185 Identities=12% Similarity=0.051 Sum_probs=117.4
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
...+++| .++++||+++|+||||||||||+|+|+|..+. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3557888 69999999999999999999999999997642 23333333332211 2245689999998777778887
Q ss_pred HHHHHHHHccC---CCCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 646 ESLLFSAWLRL---SPEVDSETRKMFIDEV------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 646 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
|++........ ......++.++++++. ++.+++.+..+.. .+.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 76532110000 0012233333444444 4444444444433 23466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 001146 717 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 717 lDEPtsgL----D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 772 (1140)
|||||+|+ |+..+..+.+.++++.+ .|.|+|+++|+++ ++.+.+|++++|.+.|+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 99999998 78899999999999874 5899999999986 68899999999965443
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.82 E-value=1.4e-21 Score=201.17 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=98.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 661 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 661 (1140)
.++|+||||||||||+++|+|...- ...|... .+......++.++|++|+. ++.+++ + +.+. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~~ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----FT 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----CC
Confidence 5899999999999999999997531 2233211 1111012356789999975 222222 0 0000 00
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHH-----HhhCCcEeEEeC--CCCCCCHHHHHHHHH
Q 001146 662 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 734 (1140)
Q Consensus 662 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~a-----l~~~p~illlDE--PtsgLD~~~~~~v~~ 734 (1140)
-.+..+.. ...||||||||++||++ |+.+|++++||| ||++||+.....+.+
T Consensus 66 ----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 66 ----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00112222 34699999999999996 999999999999 999999999998888
Q ss_pred HHHHHhhCCCEEEEEec--CCCHHHHHhhceEEEEecCCEEEEE
Q 001146 735 TVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRGGQEIYV 776 (1140)
Q Consensus 735 ~l~~~~~~g~tvi~~~H--~~~~~~~~~~d~v~~l~~gg~~~~~ 776 (1140)
.+++ .+.|+|+++| +....+..++|+ .+|+++..
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r-----~~~~i~~~ 160 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL-----PGAVLIEL 160 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC-----TTCEEEEC
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc-----CCcEEEEe
Confidence 8864 4778999997 223356677787 34666553
No 74
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.79 E-value=7.4e-20 Score=206.77 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=84.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+....+|||||||||+|||||+.+|+||+|||||||||+.+...+++.|+++.++.|+||++..|. ...+.+.+|+|++
T Consensus 158 ~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~v 236 (366)
T 3tui_C 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAV 236 (366)
T ss_dssp TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEE
Confidence 456788999999999999999999999999999999999999999999999876667787776553 3356678999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+++++|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999986
No 75
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.79 E-value=9.2e-20 Score=200.26 Aligned_cols=96 Identities=25% Similarity=0.307 Sum_probs=84.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.....|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.++.|+|||++.|... .+.+.+|+|++
T Consensus 138 ~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~ 216 (275)
T 3gfo_A 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFV 216 (275)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 44567899999999999999999999999999999999999999999999876345788887766544 56678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|+++++|+++++..
T Consensus 217 l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 217 MKEGRVILQGNPKEVFA 233 (275)
T ss_dssp EETTEEEEEECHHHHTH
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999999999864
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.79 E-value=1e-20 Score=211.27 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=119.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc--cceEEEeccCCC-CC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 639 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~ 639 (1140)
++++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ +..++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997653 258999999876431 12 346899999988 88
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEE
Q 001146 640 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 717 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illl 717 (1140)
|.+|++|++.++.... .+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8999999998864211 10 13456677776655543 4699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecC
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 752 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 752 (1140)
| ||+|||+... ++++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999999854 23444 358999999994
No 77
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.79 E-value=1.1e-19 Score=195.75 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=81.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+....+|||||||||+|||||+.+|+||+|||||||||..++..+++.++++.+..++|||++.|.. +..+.+|+|++
T Consensus 140 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~--~~~~~~d~i~~ 217 (235)
T 3tif_A 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIY 217 (235)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH--HHHTTSSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH--HHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999998765588888776655 46789999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+.+++.
T Consensus 218 l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 218 LKDGEVEREEKLRGFD 233 (235)
T ss_dssp EETTEEEEEEECC---
T ss_pred EECCEEEEEcChhhhc
Confidence 9999999999988753
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=3.1e-21 Score=212.17 Aligned_cols=147 Identities=13% Similarity=0.123 Sum_probs=96.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 661 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 661 (1140)
.++|+||||||||||+|+|+|... +.+|+|.++|.++.....++.++|++|++.+++.+||.||+.|+...... . .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H-H
Confidence 489999999999999999999766 34799999998875545567899999999999999999999887543211 1 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 662 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 662 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
.+ .+.+.++ .+..+... ..||||||||++|||+++. +++|||||.|||+.. .+.++++.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1223322 22333332 4699999999999999875 999999999999987 455566655
Q ss_pred CCCEEEEEecCC
Q 001146 742 TGRTVVCTIHQP 753 (1140)
Q Consensus 742 ~g~tvi~~~H~~ 753 (1140)
. .++|+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
No 79
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.78 E-value=2.2e-19 Score=193.78 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=84.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..++..+++.++++.++.++||+++.|. ...+.+.+|+|++
T Consensus 121 ~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~d~i~~ 199 (240)
T 2onk_A 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAV 199 (240)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998766557777776553 3457788999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 200 l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 200 MLNGRIVEKGKLKELFS 216 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998863
No 80
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=1.9e-19 Score=220.19 Aligned_cols=92 Identities=27% Similarity=0.391 Sum_probs=82.5
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
+....|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. +++|++++| |+.++++.+|+|++|
T Consensus 475 ~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it---H~l~~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIIT---QKIPTALLADKILVL 550 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEE---SCHHHHTTSSEEEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEe---cChHHHHhCCEEEEE
Confidence 4556799999999999999999999999999999999999999999998853 344555566 778889999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+|+|+++
T Consensus 551 ~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 551 HEGKVAGFGTHKELLE 566 (587)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
No 81
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.78 E-value=6.6e-23 Score=227.12 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=123.3
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
|+++||+|.|+ +.+|+|+|++|++|++++|+||||||||||+++|+|.. +|+|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 67778877663 23799999999999999999999999999999999976 3555
Q ss_pred cccccceEEEeccCCCCCCCCCHHH-HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 622 QETFARISGYCEQNDIHSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 622 ~~~~~~~~~~v~q~~~~~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
++|++|++.+++ .|++| |+.+.. ..+. .+.+.++.+ |.+..| | ..|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHH
Confidence 345677776665 47776 765521 1121 234455543 333333 2 469999999
Q ss_pred HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 701 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 701 Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
| ||||+++|+||| ||+||+.++..+.. .+|+++ ..+.+|++ +|++ |++++.|+.+
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~~ 262 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITDA 262 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCHH
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCHH
Confidence 9 999999999999 99999999887752 188875 46789999 9985 8999999863
Q ss_pred cchhHHHHHHhhC
Q 001146 781 RHSCHLISYFEAI 793 (1140)
Q Consensus 781 ~~~~~~~~~f~~~ 793 (1140)
++..+|..+
T Consensus 263 ----el~~~y~~l 271 (305)
T 2v9p_A 263 ----DWKSFFVRL 271 (305)
T ss_dssp ----HHHHHHHHS
T ss_pred ----HHHHHHHHH
Confidence 345566554
No 82
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.78 E-value=2.8e-19 Score=202.07 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=85.9
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+..++.+.++++.++.++|+|+..| ...++.+++|+|+|
T Consensus 133 ~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTH-d~~ea~~~aDri~v 211 (359)
T 3fvq_A 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH-DREEALQYADRIAV 211 (359)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHHCCEEEE
Confidence 45678999999999999999999999999999999999999999999888877667888877655 55578899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 212 l~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 212 MKQGRILQTASPHELYR 228 (359)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEeCHHHHHh
Confidence 99999999999999864
No 83
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.78 E-value=2.5e-19 Score=196.44 Aligned_cols=95 Identities=27% Similarity=0.313 Sum_probs=82.7
Q ss_pred CCccccCccchhhhhHHHHHhhc------CceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 77 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~------~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~ 77 (1140)
+...+.|||||||||+|||||+. +|+||+|||||||||..++..+++.++++.+.+++||+++.| ....+.+.
T Consensus 136 ~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtH-dl~~~~~~ 214 (266)
T 4g1u_C 136 QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH-DLNLAALY 214 (266)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECS-CHHHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEc-CHHHHHHh
Confidence 34567899999999999999999 999999999999999999999999999877655667666544 44456678
Q ss_pred ccceEEecCCeEEEecCcchHH
Q 001146 78 FDDIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 78 fD~I~vL~~G~vvy~G~~~el~ 99 (1140)
+|+|++|++|+++++|+++++.
T Consensus 215 ~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 215 ADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CSEEEEEETTEEEEEECHHHHC
T ss_pred CCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999875
No 84
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=2.6e-18 Score=213.89 Aligned_cols=107 Identities=24% Similarity=0.385 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q 001146 667 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 743 (1140)
Q Consensus 667 ~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g 743 (1140)
++++ .++.+||.+. .+.. ...|||||||||+||++|..+| ++|+|||||+|||+.....+.+.|+++.+.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~-----~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRS-----TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCB-----GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccCC-----cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3444 5778898764 4554 3579999999999999999999 5999999999999999999999999998889
Q ss_pred CEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 744 RTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 744 ~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
.|||+++|++. +.+.+|+|++|. +||++++.|++++
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 99999999974 667899999994 4799999999865
No 85
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.77 E-value=3.8e-19 Score=194.84 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=82.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||+|||||||||..+...+.+.++++.+. ++|||++.|. ...+.+.+|+|++
T Consensus 148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~ 225 (262)
T 1b0u_A 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MGFARHVSSHVIF 225 (262)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HHHHHHHCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 7777776553 3355678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 226 l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 226 LHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999988863
No 86
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=6.6e-23 Score=219.21 Aligned_cols=176 Identities=9% Similarity=-0.028 Sum_probs=108.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc----cccceEEEeccCCCCCCCCCH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~lTv 644 (1140)
-|+||||++++|++++|+||||||||||+++|+|.. + |+|.+ |.+.... ..++.++|++|++..++.++.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 499999999999999999999999999999999976 3 66777 6554221 234567899998665543321
Q ss_pred -HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHH-----HHHHhhCCcEeEE
Q 001146 645 -YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 717 (1140)
Q Consensus 645 -~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~i-----a~al~~~p~illl 717 (1140)
.+++.+. ..... ..... ..++++++...+. ..+ ..||||||||++| +++|+.+|++++|
T Consensus 86 ~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 86 NEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred ccchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1111100 00000 01111 2356666654321 111 3599999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhh-------CCCEEEEEecCCCHHHHHhhceEE
Q 001146 718 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 718 DEPtsgLD~~~~~~v~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
||||+++|..+...+.+.|+++.+ .+.+.|+++|++. +.++..|+++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 999999999999999998877643 2345555555543 4444444443
No 87
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.77 E-value=4.5e-19 Score=193.66 Aligned_cols=95 Identities=19% Similarity=0.304 Sum_probs=83.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+.....||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+. ++|||++.|. ...+.+.+|+|++
T Consensus 154 ~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~ 231 (263)
T 2olj_A 154 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLF 231 (263)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 7788877554 3456678999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 232 l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 232 MDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998863
No 88
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.77 E-value=5.8e-19 Score=193.06 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=83.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.|||||||||+|||||+.+|+||+|||||||||..+...+++.++++++ .++|||++.|... .+.+.+|+|++
T Consensus 148 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998765 4788888766544 66788999999
Q ss_pred ecCCeEEEecCcchH
Q 001146 84 LSDGQIVYQGPRELV 98 (1140)
Q Consensus 84 L~~G~vvy~G~~~el 98 (1140)
|++|++++.|+++++
T Consensus 226 l~~G~i~~~g~~~~~ 240 (257)
T 1g6h_A 226 MFNGQIIAEGRGEEE 240 (257)
T ss_dssp EETTEEEEEEESHHH
T ss_pred EECCEEEEEeCHHHh
Confidence 999999999999983
No 89
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.77 E-value=4.9e-19 Score=194.78 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=82.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
.....|||||||||+|||||+.+|+||+|||||||||..++..+++.|+++.++.++|||++.|. .+....+|+|++|
T Consensus 152 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd--~~~~~~~d~v~~l 229 (271)
T 2ixe_A 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFL 229 (271)
T ss_dssp GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC--HHHHTTCSEEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC--HHHHHhCCEEEEE
Confidence 44678999999999999999999999999999999999999999999998654457777776554 4556679999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++..
T Consensus 230 ~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 230 KEGSVCEQGTHLQLME 245 (271)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999874
No 90
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.77 E-value=5.2e-19 Score=201.25 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=86.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||+.+..++.+.++++.++.|+|+|+..| ...++.+++|+|+|
T Consensus 128 ~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~v 206 (381)
T 3rlf_A 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVV 206 (381)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEE
T ss_pred cCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999999987666788777655 45578899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 207 l~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 207 LDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEeCHHHHHh
Confidence 99999999999999864
No 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.76 E-value=6.1e-20 Score=207.93 Aligned_cols=130 Identities=18% Similarity=0.140 Sum_probs=103.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
+++++|+.+++|++++|+||||||||||+++|+|..++. +|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe--------------
Confidence 689999999999999999999999999999999987653 7999999864211 01122222221
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 728 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 728 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356677776543458999999986 57889999999874
No 92
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.76 E-value=4.9e-19 Score=192.15 Aligned_cols=90 Identities=28% Similarity=0.412 Sum_probs=80.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+++|+||+|||||||||+.++..+++.++++ . .++|||++.|.+ +..+.+|+|++|+
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tviivtH~~--~~~~~~d~v~~l~ 217 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-C-KGRTVIIIAHRL--STVKNADRIIVME 217 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEEEEECSSG--GGGTTSSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCH--HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999986 3 477887776654 4456799999999
Q ss_pred CCeEEEecCcchHH
Q 001146 86 DGQIVYQGPRELVL 99 (1140)
Q Consensus 86 ~G~vvy~G~~~el~ 99 (1140)
+|++++.|+++++.
T Consensus 218 ~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 218 KGKIVEQGKHKELL 231 (247)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999999886
No 93
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=5.2e-19 Score=191.36 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=82.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+ .++|||++.|.+ ..+.+.+|+|++
T Consensus 134 ~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~ 211 (240)
T 1ji0_A 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYV 211 (240)
T ss_dssp TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEE
Confidence 445678999999999999999999999999999999999999999999998765 566777665533 367789999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 212 l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 212 LETGQIVLEGKASELL 227 (240)
T ss_dssp EETTEEEEEEEHHHHH
T ss_pred EECCEEEEEcCHHHHh
Confidence 9999999999998875
No 94
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.76 E-value=4e-20 Score=209.82 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=120.3
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc--cceEEEeccCCC-CCC
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 640 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~ 640 (1140)
+++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ +..++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999997653 258999999876421 12 346899999988 888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEe
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 718 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlD 718 (1140)
.+|++|++.++.... .+ ..+++.+|+.+..+..+ ++|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 999999998864211 10 13456677776655543 4699 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecC
Q 001146 719 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 752 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~ 752 (1140)
||+|||+.... +++. +.|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999988652 3343 348999999994
No 95
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.76 E-value=2.1e-18 Score=196.23 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHHHHh---------hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 693 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
.||||||||++||++|+ .+|+||||||||++||+..+..+.+.++++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998763 699999994 4 2 7899
Q ss_pred EEEEecCCEEEEECCCCc
Q 001146 764 LFLMKRGGQEIYVGPLGR 781 (1140)
Q Consensus 764 v~~l~~gg~~~~~g~~~~ 781 (1140)
+++|++ |+++..|++++
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 89999998753
No 96
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.76 E-value=8.2e-19 Score=187.75 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=79.0
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..++..+.+.++++.+. ++||+++.|.. +..+.+|+|++
T Consensus 135 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~--~~~~~~d~v~~ 211 (224)
T 2pcj_A 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER--ELAELTHRTLE 211 (224)
T ss_dssp TCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH--HHHTTSSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH--HHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 78888877764 34489999999
Q ss_pred ecCCeEEEecCc
Q 001146 84 LSDGQIVYQGPR 95 (1140)
Q Consensus 84 L~~G~vvy~G~~ 95 (1140)
|++|+++++|+.
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999974
No 97
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.76 E-value=4e-19 Score=217.40 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=80.4
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
+....|||||||||+|||||+++|+||+|||||||||+.++..+.+.++++. +++|++++| |+.++++.+|+|++|
T Consensus 473 ~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it---H~l~~~~~~d~i~~l 548 (578)
T 4a82_A 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVA---HRLSTITHADKIVVI 548 (578)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEEC---SSGGGTTTCSEEEEE
T ss_pred cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cCHHHHHcCCEEEEE
Confidence 3456799999999999999999999999999999999999999999998754 344444444 667788999999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|+++++|+|+|+++
T Consensus 549 ~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 549 ENGHIVETGTHRELIA 564 (578)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
No 98
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=3.4e-19 Score=218.74 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=79.6
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
...|||||||||+|||||+++|+||+|||||||||+.++..+++.++++. + ++|+|+.. |+.++++.+|+|++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~it--H~l~~~~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIA--HRLNTIKNADLIIVLRD 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEES--CCTTHHHHCSEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEe--cCHHHHHcCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999998864 3 55555543 55667888999999999
Q ss_pred CeEEEecCcchHHH
Q 001146 87 GQIVYQGPRELVLE 100 (1140)
Q Consensus 87 G~vvy~G~~~el~~ 100 (1140)
|+++++|+|+|+++
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999985
No 99
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.75 E-value=7.5e-19 Score=215.36 Aligned_cols=91 Identities=26% Similarity=0.399 Sum_probs=80.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. ++.|++++| |+.++++.+|+|++|+
T Consensus 477 ~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it---H~~~~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIA---HRLSTIEQADEILVVD 552 (582)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cCHHHHHhCCEEEEEE
Confidence 456799999999999999999999999999999999999999999998864 333444455 6677888999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 553 EGEIIERGRHADLLA 567 (582)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999974
No 100
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.75 E-value=1.1e-18 Score=197.49 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| -..++.+++|+|++
T Consensus 140 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 218 (355)
T 1z47_A 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH-DQEEALEVADRVLV 218 (355)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999999999877666788887655 44577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 219 l~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 219 LHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999998864
No 101
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.75 E-value=1.2e-18 Score=197.78 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=85.5
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.++++.++.++|+|++.| ...+..+++|+|++
T Consensus 128 ~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~~~~~adri~v 206 (359)
T 2yyz_A 128 DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH-DQAEAMTMASRIAV 206 (359)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcC-CHHHHHHhCCEEEE
Confidence 45567899999999999999999999999999999999999999999999877666778777656 34567889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 207 l~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 207 FNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999999864
No 102
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.75 E-value=6.7e-19 Score=215.79 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=80.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+++|+||+|||||||||+.++..+++.+++.. + ++|+|+.. |+.++++.+|+|++|+
T Consensus 477 ~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~it--H~~~~~~~~d~i~~l~ 552 (582)
T 3b60_A 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIA--HRLSTIEQADEIVVVE 552 (582)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEEC--SCGGGTTTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEe--ccHHHHHhCCEEEEEE
Confidence 457799999999999999999999999999999999999999999999864 3 55555543 5566788999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 553 DGIIVERGTHSELLA 567 (582)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999999975
No 103
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.75 E-value=1.2e-18 Score=197.12 Aligned_cols=95 Identities=24% Similarity=0.268 Sum_probs=85.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| ...++.+++|+|++
T Consensus 122 ~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~~~~~~adri~v 200 (348)
T 3d31_A 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAV 200 (348)
T ss_dssp TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45677899999999999999999999999999999999999999999999887666778777655 34578899999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|++++.|+++++.
T Consensus 201 l~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 201 VMDGKLIQVGKPEEIF 216 (348)
T ss_dssp ESSSCEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999999885
No 104
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=6.1e-18 Score=193.26 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCcCCHHHHH------HHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 691 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 691 ~~~LSgGqrq------Rv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||+++|++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4679999999 67788888889999999999999999999999999999877789999999995 467899999
Q ss_pred EEEec
Q 001146 765 FLMKR 769 (1140)
Q Consensus 765 ~~l~~ 769 (1140)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99963
No 105
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.75 E-value=1e-18 Score=198.48 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=85.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.++++.++.++|+|++.| ...++.+++|+|++
T Consensus 128 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 206 (362)
T 2it1_A 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH-DQAEALAMADRIAV 206 (362)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECC-CHHHHHHhCCEEEE
Confidence 34567899999999999999999999999999999999999999999999877665778777655 34577899999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 207 l~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 207 IREGEILQVGTPDEVYY 223 (362)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
No 106
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.75 E-value=1.2e-18 Score=197.92 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=85.6
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| ...++.+++|+|++
T Consensus 135 ~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~~~~~adri~v 213 (353)
T 1oxx_K 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH-DPADIFAIADRVGV 213 (353)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 45577899999999999999999999999999999999999999999999877666778877666 34577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 214 l~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 214 LVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
No 107
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.75 E-value=1.4e-18 Score=190.86 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=84.1
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+. ++|||++.|.+. .+.+.+|++++
T Consensus 133 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~ 210 (266)
T 2yz2_A 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVV 210 (266)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654 788888766554 55677999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 211 l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 211 LEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EETTEEEEEEEHHHHHH
T ss_pred EECCEEEEeCCHHHHhc
Confidence 99999999999998875
No 108
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.75 E-value=9.4e-19 Score=191.45 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=80.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+.+|+||+|||||||||..++..+++.++++. . ++|||++.|.+. ..+.+|+|++|+
T Consensus 152 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~--~~~~~d~i~~l~ 227 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLS--TISSAESIILLN 227 (260)
T ss_dssp SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGG--GSTTCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH--HHHhCCEEEEEE
Confidence 457899999999999999999999999999999999999999999998864 3 678877766654 446799999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|++++.|+++++..
T Consensus 228 ~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 228 KGKIVEKGTHKDLLK 242 (260)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999864
No 109
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.75 E-value=9.2e-19 Score=215.13 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=78.2
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
....|||||||||+|||||+++|+||+|||||||||+.++..+++.+++..+ ++|+|+.. |+.++++.+|+|++|+
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it--H~~~~~~~~d~i~~l~ 555 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIA--HRLSTIKNANMVAVLD 555 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEEC--CCHHHHHHSSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEe--cCHHHHHcCCEEEEEE
Confidence 3477999999999999999999999999999999999999999999998653 45555443 6677889999999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|+++++|+|+|+++
T Consensus 556 ~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 556 QGKITEYGKHEELLS 570 (595)
T ss_dssp TTEEEEEECSCC---
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999974
No 110
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.75 E-value=1.7e-18 Score=197.54 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=85.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.++.++|+|++.| ...+..+++|+|++
T Consensus 136 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 214 (372)
T 1v43_A 136 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-DQVEAMTMGDRIAV 214 (372)
T ss_dssp TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEE
Confidence 44567899999999999999999999999999999999999999999999877665778777655 44577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 215 l~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 215 MNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999999864
No 111
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.75 E-value=1.7e-18 Score=197.88 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=85.4
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...++|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++.++|+|++.| ...+..+++|+|++
T Consensus 134 ~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~v 212 (372)
T 1g29_1 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAV 212 (372)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CHHHHHHhCCEEEE
Confidence 44677899999999999999999999999999999999999999999999877666778777666 34577889999999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++..
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999999864
No 112
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.75 E-value=1.4e-18 Score=189.14 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=81.7
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.++++.+..++|||++.|.+ ..+.+.+|++++
T Consensus 123 ~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~ 201 (253)
T 2nq2_C 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLL 201 (253)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEE
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEE
Confidence 3456789999999999999999999999999999999999999999999987654477877765543 356688999999
Q ss_pred ecCCeEEEecCcchHH
Q 001146 84 LSDGQIVYQGPRELVL 99 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~ 99 (1140)
|++|+ +++|+++++.
T Consensus 202 l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 202 LNKQN-FKFGETRNIL 216 (253)
T ss_dssp EETTE-EEEEEHHHHC
T ss_pred EeCCe-EecCCHHHHh
Confidence 99999 9999988764
No 113
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=4.4e-20 Score=216.17 Aligned_cols=174 Identities=17% Similarity=0.097 Sum_probs=136.9
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc---ccCc--------ccccceEEEeccC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 635 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~q~ 635 (1140)
..+|+++ +.+.+||+++|+||||||||||+++|+|..+++ .|.|.++|+ +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~--~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD--VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 999999999999999999999999999987644 799999998 3322 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 636 -DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 636 -~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
+..++.+|+.+|+.+.+...... . +++ ....|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~-------~---~~v------~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR-------G---QHV------LLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT-------T---CEE------EEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-------C---CCH------HHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 55677889999998765321000 0 000 111122 24599999 999999 889988
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHhh---C-CC-----EEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|+|||+.....+.+.++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999998865 3 64 9999999987 467899999985 899998764
No 114
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=1.2e-18 Score=192.22 Aligned_cols=94 Identities=29% Similarity=0.351 Sum_probs=81.3
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEE--EEEecCCChhHHhhccce
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~ti--iitIhQp~~~t~~~fD~I 81 (1140)
+...+.|||||||||+|||||+.+|+||+|||||||||..+...+++.|+++.++ ++|| |++.|.. ..+.+.+|+|
T Consensus 156 ~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v 233 (279)
T 2ihy_A 156 QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKI 233 (279)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEE
T ss_pred cCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEE
Confidence 3456789999999999999999999999999999999999999999999987655 6666 6555543 3556889999
Q ss_pred EEecCCeEEEecCcchHH
Q 001146 82 ILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~ 99 (1140)
++|++|++++.|+++++.
T Consensus 234 ~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEETTEEEEEEEHHHHC
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988764
No 115
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=2.6e-18 Score=187.09 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=82.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..+...+++.|+++.+ .++|||++.|.+ ..+.+.+|++++|
T Consensus 142 ~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l 219 (256)
T 1vpl_A 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALI 219 (256)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998764 577777766543 3455679999999
Q ss_pred cCCeEEEecCcchHHH
Q 001146 85 SDGQIVYQGPRELVLE 100 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~ 100 (1140)
++|++++.|+++++.+
T Consensus 220 ~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 220 HNGTIVETGTVEELKE 235 (256)
T ss_dssp ETTEEEEEEEHHHHHH
T ss_pred ECCEEEEecCHHHHHH
Confidence 9999999999998865
No 116
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.74 E-value=8.2e-19 Score=190.29 Aligned_cols=91 Identities=23% Similarity=0.306 Sum_probs=80.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
..+.|||||||||+|||||+++|+||+|||||||||..++..+++.++++. .++|||++.|. .+..+.+|+|++|+
T Consensus 136 ~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~--~~~~~~~d~v~~l~ 211 (243)
T 1mv5_A 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHR--LSTIVDADKIYFIE 211 (243)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCS--HHHHHHCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCC--hHHHHhCCEEEEEE
Confidence 356899999999999999999999999999999999999999999999865 47787777665 44557799999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|++++.|+++++..
T Consensus 212 ~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 212 KGQITGSGKHNELVA 226 (243)
T ss_dssp TTEECCCSCHHHHHH
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999998864
No 117
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=187.27 Aligned_cols=92 Identities=23% Similarity=0.254 Sum_probs=80.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHH---HHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~---~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
.....|||||||||+|||||+.+|+||+|||||||||..++..+++.++ +. . .++|||++.|.+.. .+.+|+|
T Consensus 123 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~--~~~~d~v 198 (237)
T 2cbz_A 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSY--LPQVDVI 198 (237)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTT--GGGSSEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHH--HHhCCEE
Confidence 4567899999999999999999999999999999999999999999884 32 2 47788888777653 4679999
Q ss_pred EEecCCeEEEecCcchHHH
Q 001146 82 ILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 82 ~vL~~G~vvy~G~~~el~~ 100 (1140)
++|++|++++.|+++++..
T Consensus 199 ~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 199 IVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEeCCEEEEeCCHHHHhh
Confidence 9999999999999998864
No 118
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.73 E-value=2.7e-18 Score=186.15 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=81.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCce-------EeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHh
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 76 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~-------ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~ 76 (1140)
+...+.||||||||++|||||+.+|+ ||+|||||||||..+...+.+.++++.+. ++|||++.|. ...+.+
T Consensus 121 ~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd-~~~~~~ 198 (249)
T 2qi9_C 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHD-LNHTLR 198 (249)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHH
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHH
Confidence 34567899999999999999999999 99999999999999999999999987654 7777776553 335558
Q ss_pred hccceEEecCCeEEEecCcchHH
Q 001146 77 LFDDIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 77 ~fD~I~vL~~G~vvy~G~~~el~ 99 (1140)
.+|++++|++|++++.|+++++.
T Consensus 199 ~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 199 HAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HCSEEEEEETTEEEEEEEHHHHS
T ss_pred hCCEEEEEECCEEEEeCCHHHHh
Confidence 89999999999999999988774
No 119
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.73 E-value=4.8e-18 Score=186.61 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=82.6
Q ss_pred Cccc-cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh-ccceE
Q 001146 5 EMIR-GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDII 82 (1140)
Q Consensus 5 ~~~r-gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~-fD~I~ 82 (1140)
.... +|||||||||+|||||+.+|+||+|||||||||..+...+++.++++. +.++|||++.|.+. .+-.. +|+|+
T Consensus 159 ~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~~g~tviivtHd~~-~~~~~~~d~v~ 236 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR-DGKRSFIIVTHYQR-ILDYIKPDYVH 236 (267)
T ss_dssp SBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-CSSCEEEEECSSGG-GGGTSCCSEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeeCHH-HHHhhcCCEEE
Confidence 3444 499999999999999999999999999999999999999999998865 35788888766543 33344 89999
Q ss_pred EecCCeEEEecCcchHHHHHHhCCC
Q 001146 83 LLSDGQIVYQGPRELVLEFFASMGF 107 (1140)
Q Consensus 83 vL~~G~vvy~G~~~el~~~F~~~G~ 107 (1140)
+|++|++++.|+++++.. ....||
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999998753 344444
No 120
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.72 E-value=9.4e-19 Score=196.62 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=116.3
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-EEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .+.+.+.+......++.+..+.+... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 34699999999999999999999999999999999964321 24 45443333322222222222222211 2223
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH-HHHHHHHHHHhhCCcEeEEeCCCC--
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 722 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq-rqRv~ia~al~~~p~illlDEPts-- 722 (1140)
+++.... + +.++.++.++++++..++. ..+. ...+|.+| +||+. |+++..+|+++++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 3443221 1 1122223344444432321 1111 13488898 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHhhC-CCEEEEEecCCC-H--------------------HHHHhhceEEEEecC
Q 001146 723 -G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 770 (1140)
Q Consensus 723 -g---LD~-~~~~~v~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~v~~l~~g 770 (1140)
+ +|. .....+.+.|++++++ |+|||+++|+.. . .+.+.+|+|++|++|
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 455 6667899999998765 999999999962 2 467889999999874
No 121
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.72 E-value=3.1e-18 Score=183.94 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=77.0
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHH-HHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L-~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
.+.||||||||++|||||+++|+||+|||||||||..++..+++.+ ++.. .++|||++.|++ +..+.+|++++|+
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~--~~~~~~d~v~~l~ 203 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHLKKADKILILH 203 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHHHHCSEEEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999999999999999998874 4432 367887776654 4456799999999
Q ss_pred CCeEEEecCcchHH
Q 001146 86 DGQIVYQGPRELVL 99 (1140)
Q Consensus 86 ~G~vvy~G~~~el~ 99 (1140)
+|++++.|+++++.
T Consensus 204 ~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 204 EGSSYFYGTFSELQ 217 (229)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999999886
No 122
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.72 E-value=3.5e-18 Score=186.10 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=74.4
Q ss_pred Ccccc-CccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh-ccceE
Q 001146 5 EMIRG-ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDII 82 (1140)
Q Consensus 5 ~~~rg-LSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~-fD~I~ 82 (1140)
..... ||||||||++|||||+.+|+||+|||||||||..++..+.+.++++.+ .++|||++.|.+. .+... +|+|+
T Consensus 138 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~~d~v~ 215 (250)
T 2d2e_A 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQR-ILNYIQPDKVH 215 (250)
T ss_dssp SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSG-GGGTSCCSEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCCEEE
Confidence 34556 999999999999999999999999999999999999999999998653 5778888777543 44445 59999
Q ss_pred EecCCeEEEecCcch
Q 001146 83 LLSDGQIVYQGPREL 97 (1140)
Q Consensus 83 vL~~G~vvy~G~~~e 97 (1140)
+|++|++++.|+++.
T Consensus 216 ~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 216 VMMDGRVVATGGPEL 230 (250)
T ss_dssp EEETTEEEEEESHHH
T ss_pred EEECCEEEEEeCHHH
Confidence 999999999999873
No 123
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.72 E-value=3.3e-18 Score=196.33 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=78.1
Q ss_pred ccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCC
Q 001146 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 87 (1140)
Q Consensus 8 rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G 87 (1140)
+.|||||||||+|||||+.+|+||+|||||||||+.+..++.+.+++.. .++|+|++.|+ .+....+|+|++|++|
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd--~e~~~~aDri~vl~~G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEAR--IEAMLECDQFLVIEEN 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSS--SGGGTTCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcC--HHHHHhCCEEEEEECC
Confidence 4499999999999999999999999999999999999999999998742 45666665454 4677889999999999
Q ss_pred eEEEecCcchHHH
Q 001146 88 QIVYQGPRELVLE 100 (1140)
Q Consensus 88 ~vvy~G~~~el~~ 100 (1140)
++++.|+++++..
T Consensus 230 ~i~~~g~~~el~~ 242 (390)
T 3gd7_A 230 KVRQYDSILELYH 242 (390)
T ss_dssp EEEEESSHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
No 124
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.71 E-value=7.4e-18 Score=184.04 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=79.1
Q ss_pred CccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc-ceEE
Q 001146 5 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD-DIIL 83 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD-~I~v 83 (1140)
...+.||||||||++|||||+.+|+||+|||||||||..+...+.+.|+++. . |+|++.|.+ ..+.+.+| ++++
T Consensus 124 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~-~~~~~~~d~~i~~ 198 (263)
T 2pjz_A 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL-DMLNLYKEYKAYF 198 (263)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG-GGGGGCTTSEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH-HHHHHhcCceEEE
Confidence 4567899999999999999999999999999999999999999999998743 2 666665543 45668899 9999
Q ss_pred ecCCeEEEecCcchHHH
Q 001146 84 LSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 84 L~~G~vvy~G~~~el~~ 100 (1140)
|++|++++.|+++++.+
T Consensus 199 l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 199 LVGNRLQGPISVSELLE 215 (263)
T ss_dssp EETTEEEEEEEHHHHHT
T ss_pred EECCEEEEecCHHHHHh
Confidence 99999999999998863
No 125
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.69 E-value=1.6e-17 Score=208.36 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=119.6
Q ss_pred HHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCC-C-HH---HHHHHH
Q 001146 595 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV-D-SE---TRKMFI 669 (1140)
Q Consensus 595 TLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~-~-~~---~~~~~~ 669 (1140)
|+..|..++..+ ..++|.++|+++.. +..+|+.|++.|...+...... . .. ...+..
T Consensus 383 ~C~~C~g~rl~~--~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLNR--EALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBCT--TGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCCh--HhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 344444445543 25788898877532 2347888888876544332111 1 00 111223
Q ss_pred HHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEE
Q 001146 670 DEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 746 (1140)
Q Consensus 670 ~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tv 746 (1140)
.+.++.+||... .+.. ...|||||||||+||++|+++|+ +|+|||||+|||+.....+++.|+++.++|.||
T Consensus 445 ~~~L~~vgL~~l~l~r~-----~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRS-----ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHHTTTCTTCBTTSB-----GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHcCCccccccCC-----cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 467778898754 3544 35799999999999999999887 999999999999999999999999998889999
Q ss_pred EEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 747 VCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 747 i~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
|+++|++. ....+|++++|. ++|++++.|++++
T Consensus 520 ivVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 520 IVVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 99999964 556799999992 4799999999753
No 126
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.68 E-value=1.6e-17 Score=183.96 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=76.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHH-HHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L-~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
.+.||||||||++|||||+.+|+||+|||||||||..++..+.+.+ ++.. .++|||++.|.+ +..+.+|+|++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~--~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM--EHLKKADKILILH 232 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH--HHHHHSSEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH--HHHHcCCEEEEEE
Confidence 4689999999999999999999999999999999999999998864 3332 367877776654 4557799999999
Q ss_pred CCeEEEecCcchHHH
Q 001146 86 DGQIVYQGPRELVLE 100 (1140)
Q Consensus 86 ~G~vvy~G~~~el~~ 100 (1140)
+|++++.|+++++..
T Consensus 233 ~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 233 EGSSYFYGTFSELQN 247 (290)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCeEEEeCCHHHHhh
Confidence 999999999998863
No 127
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.68 E-value=4.2e-19 Score=199.10 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=107.6
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 656 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~ 656 (1140)
+++|+++||+||||||||||+++|+|...+. +|. +.+++|+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999976531 121 357999999999887 99999854211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHH
Q 001146 657 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 736 (1140)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l 736 (1140)
+.......+.+.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111112234667788777 44433332 4699999999999999999999999999999998621 011
Q ss_pred HHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 737 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 737 ~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.++. + .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 1111 2 345555654333334455555554
No 128
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.68 E-value=9.4e-17 Score=159.04 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCcCCHHHHHHHHHH------HHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceE
Q 001146 691 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia------~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+..||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999876 899999999999999999999999999999999877799999999997 467889999
Q ss_pred EEEe
Q 001146 765 FLMK 768 (1140)
Q Consensus 765 ~~l~ 768 (1140)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 129
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.68 E-value=2.1e-16 Score=196.37 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHccCCCC---CCH---HHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 001146 640 PFVTIYESLLFSAWLRLSPE---VDS---ETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 712 (1140)
Q Consensus 640 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p 712 (1140)
..+||.|++.|...+.++.. ... ++..+++ +.++.+||... .++.+ ..|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 35899999999776654321 000 1223344 35788999764 45543 579999999999999999985
Q ss_pred --cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 713 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 713 --~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
++|+|||||+|||+.....+.+.|+++.+.|.|||+++|++. ..+.+|+|++|. +||++++.|++++
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 999999999999999999999999999888999999999974 457899999993 4799999999875
No 130
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=5.9e-17 Score=196.18 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=116.0
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 653 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 653 (1140)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 5599999999999999999999999999864321 11 23456666531 12223221
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH-----H
Q 001146 654 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 728 (1140)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~-----~ 728 (1140)
+. ..+. ++ +...|+.+..+.. ...|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 2234555544443 3569999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCCC---------HHHHHhhceEEEEecCCE
Q 001146 729 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRGGQ 772 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~d~v~~l~~gg~ 772 (1140)
+..+.+.++.+++.|.|+|+++|+.. ..+..++|++++|.+ |+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999999998888999999999971 246678999999986 44
No 131
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.67 E-value=1.1e-17 Score=214.06 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=117.5
Q ss_pred EEEEEe-----EEEEEecCchhhhcccccCceeeeeCceEEEeC-------ceEEEEeCCCCCChHHHHHHHhcCCcCce
Q 001146 541 SLTFDE-----VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGY 608 (1140)
Q Consensus 541 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------G~~~al~G~sGaGKSTLl~~l~g~~~~~~ 608 (1140)
.++++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||++ |....
T Consensus 750 ~l~i~~~rHP~l~~~~~------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-- 814 (1022)
T ss_dssp CEEEEEECCCC------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--
T ss_pred eEEEEeccccEEEEEec------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--
Confidence 488888 766552 224589999999987 999999999999999999999 86531
Q ss_pred EEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 001146 609 ITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 688 (1140)
Q Consensus 609 ~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 688 (1140)
.++..+||||+.. .+||.|++.. .+|+.+..+.
T Consensus 815 ----------------~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~---- 847 (1022)
T 2o8b_B 815 ----------------MAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMS---- 847 (1022)
T ss_dssp ----------------HHTTTCCEESSEE---EECCCSBEEE------------------------ECC-----------
T ss_pred ----------------HhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhh----
Confidence 1222238998752 4555554410 1122111111
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhceEEE
Q 001146 689 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA-AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 689 ~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~-~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
+...+|++++ ++++|++++++|+++||||||+|+|+... ..++..|+.++++ |.++|++||+++ .+...+|++.+
T Consensus 848 -~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v 924 (1022)
T 2o8b_B 848 -GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAV 924 (1022)
T ss_dssp ---CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSE
T ss_pred -chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCccee
Confidence 1234777766 49999999999999999999999999874 5578888888776 999999999975 35567899988
Q ss_pred EecCCEEE--EECCC
Q 001146 767 MKRGGQEI--YVGPL 779 (1140)
Q Consensus 767 l~~gg~~~--~~g~~ 779 (1140)
+. |++. +.|++
T Consensus 925 ~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 925 RL--GHMACMVENEC 937 (1022)
T ss_dssp EE--EEEEEC-----
T ss_pred ec--CeEEEEEecCc
Confidence 74 6777 45553
No 132
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.66 E-value=1.1e-16 Score=202.06 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=109.2
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHH--------hcCCcCceEEEEEEEcCcccCcccccceEEEeccCC
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGYPKKQETFARISGYCEQND 636 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l--------~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~ 636 (1140)
+++.+++|+++.+++|++++|+||||||||||||++ .|...+. .+.. ++.+ +
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~~---------------~~~~---d 706 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESAE---------------VSIV---D 706 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEEE---------------EECC---S
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--cccc---------------chHH---H
Confidence 345789999999999999999999999999999999 3422211 1100 1100 0
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH--hhCCcE
Q 001146 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSI 714 (1140)
Q Consensus 637 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al--~~~p~i 714 (1140)
+++..+|+.+ .. .+++|+|++++..+|++| +.+|++
T Consensus 707 ----------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 707 ----------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp ----------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred ----------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0111122211 11 135888888888888888 999999
Q ss_pred eEEeCCCCCCCHHHHHHH-HHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 715 IFMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+||||||+|||+.....+ ...++.+.+ .|.|+|++||+. ++.+++|++..+.+ |++...++.+
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecCC
Confidence 999999999999988887 666777765 499999999995 56789999999986 7999887764
No 133
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.66 E-value=2e-18 Score=188.21 Aligned_cols=156 Identities=9% Similarity=-0.001 Sum_probs=98.1
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+++++|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567899999999999999999999999999999999854 112222 2356789999985 6678999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
.|++.+......... ......+.+.+.++.+ .+..+.. ...+|+||+||+++ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999877543221110 0110112233444433 2333333 24699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 725 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 725 D~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
|.. +.++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 764 2222 378999999963
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.66 E-value=2.9e-19 Score=216.43 Aligned_cols=168 Identities=20% Similarity=0.144 Sum_probs=114.6
Q ss_pred ceeeeeCceE-EEeCceEEEEeCCCCCChHHHHHH--HhcCCcCceEEEEEEEcCcccCc--ccccceEEEeccCCCCCC
Q 001146 566 KLVLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSP 640 (1140)
Q Consensus 566 ~~~iL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~--l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 640 (1140)
+.++|+|+|+ .+++||+++|+||||||||||+++ ++|...++ +|.|.++|.+... ...++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3457999999 999999999999999999999999 67876533 6899999987422 123355788888643211
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+ +.+ ..... .. ...++++.+++.+..+... +.|||| +|++++||||
T Consensus 102 ~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCH
Confidence 1 100 00000 00 0011122222222222221 234444 5889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH--------HHHhhceEEEEec
Q 001146 721 TS-----GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID--------IFEAFDELFLMKR 769 (1140)
Q Consensus 721 ts-----gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~--------~~~~~d~v~~l~~ 769 (1140)
|+ +||+..++.+.+.++++++.|+|||+++|+++.. ...++|+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999998732 3455999999986
No 135
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.65 E-value=1e-17 Score=183.19 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=104.4
Q ss_pred eeCc-eEEEeCceEEEEeCCCCCChHHHHHHHh--cCCcCceEEEEEEEcCcccCcc--cccceEEEeccCCCCCCCCCH
Q 001146 570 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 570 L~~v-s~~i~~G~~~al~G~sGaGKSTLl~~l~--g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~lTv 644 (1140)
|+++ .+.+++|++++|+||||||||||+++|+ |...++ .|.+.+++...... ...+.+++++|+....+.+++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 4444 2489999999999999999999999999 552221 35666666543211 112334566665433344444
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCC
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgL 724 (1140)
.++....... .. .+. ... ....+.++..+...+..-..+|+++++||||++|
T Consensus 97 ~~~~~~~~~~------~~-------~~~----------~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 97 VDGVSSVVGL------PS-------EEK----------FVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp EC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred EEcccccccc------cc-------ccc----------eec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHH
Confidence 4432211000 00 000 000 0113445555444444456899999999999999
Q ss_pred C-----HHHHHHHHHHHHHHhhCCCEEEEEecCCCHHH---------HHhh-ceEEEEec
Q 001146 725 D-----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELFLMKR 769 (1140)
Q Consensus 725 D-----~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-d~v~~l~~ 769 (1140)
| +..+..+.+.++.+++.|+|||+++|+++ +. ..+| |++++|++
T Consensus 149 d~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 149 LRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEee
Confidence 8 66777799999988878999999999986 34 5788 99999963
No 136
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.64 E-value=5.1e-17 Score=177.64 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=96.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
+|+|+| +++|++++|+||||||||||+++|+|..++. .+|+|.++|.++. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~---------~~~~~~~~~--------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE---------YVFKHKKSI--------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCC---------SCCCCSSSE---------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcce---------eecCCccee---------
Confidence 689999 8999999999999999999999999976521 1689999887653 222221000
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
. .. +.+++.. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v------~q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----V------NQ-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----E------EE-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----e------eH-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 0122211 123 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 729 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
...+ ++. ++.|.+|++++|+.+ ..+.+||++.|..
T Consensus 113 ~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 333 356999999999976 5788999988863
No 137
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.64 E-value=1.5e-17 Score=188.93 Aligned_cols=175 Identities=14% Similarity=0.172 Sum_probs=122.7
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc----------ccccceEEEeccCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----------ETFARISGYCEQND 636 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----------~~~~~~~~~v~q~~ 636 (1140)
..+|+++ +.+.+||+++|+||||||||||+++|+|...++ .|.+.+.|++..+ ..+++.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4579999 999999999999999999999999999987654 6899998865211 12345577777753
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeE
Q 001146 637 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 716 (1140)
Q Consensus 637 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ill 716 (1140)
. ...+.+.-... ...+.+.....+ .+.... . ..+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~-l--d~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLM-M--DSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEE-E--ETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHH-H--hhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 22222211100 000111111111 010000 0 1134699999 899999 688887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhh--CCC-----EEEEEecCCCHHHHHhhceEEEEecCCEEEEECCC
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 779 (1140)
|+|||+.....+.+.++++.+ .|. ||++++||++ ...+|++++|.+ |+++..|+.
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999987 467899999985 899998764
No 138
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.63 E-value=7e-16 Score=192.49 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=105.6
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCH------HHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhC
Q 001146 639 SPFVTIYESLLFSAWLRLSPEVDS------ETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN 711 (1140)
Q Consensus 639 ~~~lTv~e~l~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~LSgGqrqRv~ia~al~~~ 711 (1140)
+..+||.|.+.|...+.++..... ++.++++ +.++.+||... .++. ...|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~-----~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRA-----AATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCB-----GGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCC-----cccCCHHHHHHHHHHHHHhhC
Confidence 345899999998544432210000 1223344 34788898754 4554 357999999999999999999
Q ss_pred --CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEECCCCc
Q 001146 712 --PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 781 (1140)
Q Consensus 712 --p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~~ 781 (1140)
|++|+|||||+|||+.....+.+.|+++.+.|.|||+++|++. ..+.+|+|++|. +||++++.|++++
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 5899999999999999999999999999888999999999974 467899999994 5799999999753
No 139
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=2.4e-16 Score=198.21 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=98.9
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.|++|+|+++++|++++|+||||||||||||++++...... .|...... ...++.+ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 4678999999999999999999999999999999976311000 01001000 0011111 1111111111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 725 (1140)
+++ .. +.+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 124589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHhh-CCCEEEEEecCCCHHHHHhhceE
Q 001146 726 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 764 (1140)
Q Consensus 726 ~~~~~~v~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v 764 (1140)
+.....+. ..++.+.+ .|.|+|++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99998887 67777764 5999999999964 55667764
No 140
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.60 E-value=8.5e-17 Score=173.49 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=93.2
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcC--CcCc---eEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~--~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+.+++||+++|+||||||||||+++|+|. .+++ ...+.+.+++.+... .+.++++.|...+.+. |+.||+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~- 94 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHI- 94 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcE-
Confidence 57999999999999999999999999993 3211 113466666543210 0112222332222111 222221
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH-HHHHHHHHHHHhh-------CCcEeEEeCCC
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 721 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG-qrqRv~ia~al~~-------~p~illlDEPt 721 (1140)
.+. ...+++ +++++..+++++. +|+++++||||
T Consensus 95 ---------------------------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 95 ---------------------------YVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ---------------------------EEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ---------------------------EEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 110 113333 3344666666666 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHhh-CCCEEEEEecCCCH---HHHHhhceEEEEecC
Q 001146 722 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 770 (1140)
Q Consensus 722 sgLD~~-------~-----~~~v~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~v~~l~~g 770 (1140)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|+++.|+++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777764 49999999995431 266789999999863
No 141
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.58 E-value=1.9e-17 Score=185.40 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=85.5
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC-CcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
++.+++|++++| +|+||||||||||++.|.|. .. +.+| +.++|.+.......+.+++++|++.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 456899999998 99999999999999999996 44 3467 77777665332223457899998888888999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC-C
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS-G 723 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts-g 723 (1140)
.|+..++..... .+..+..++.+.+ ..+.. .+++|||||||+.+||+++ ++++||||+ |
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 998877543210 0100111122111 12222 2569999999999988875 999999998 4
Q ss_pred CCHHHHHHHHHHHHHHhhC-CCEEEEEecCCC
Q 001146 724 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 754 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~ 754 (1140)
||+... +.++++.++ +.++|++.||+.
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 556665543 789999999864
No 142
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.58 E-value=1.2e-16 Score=178.21 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=103.8
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc--cceEEEeccCCCCCCCCCHHHHHH
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+|++++|+||||||||||+++|+|...+. .|+|.++|.+.... .+ ++.+++++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999999976543 68999999876321 11 345899999998889999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 729 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~ 729 (1140)
++.... .+ ..+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653210 00 01223333332221 12456669999999999999994333 3444444
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCC
Q 001146 730 AIVMRTVRNTVDT-GRTVVCTIHQPS 754 (1140)
Q Consensus 730 ~~v~~~l~~~~~~-g~tvi~~~H~~~ 754 (1140)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4555666666543 899999999743
No 143
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.58 E-value=1.7e-15 Score=149.95 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=69.2
Q ss_pred CccccCccchhhhhHHH------HHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhc
Q 001146 5 EMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 78 (1140)
Q Consensus 5 ~~~rgLSGGQKqRIsIA------raLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~f 78 (1140)
...+.||||||||++|| |+|+.+|++|+|||||+|||..+...+.+.++++.. .++||+++-|.+ +..+.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhC
Confidence 45678999999999876 899999999999999999999999999999988654 467888777765 577899
Q ss_pred cceEEe--cCCe
Q 001146 79 DDIILL--SDGQ 88 (1140)
Q Consensus 79 D~I~vL--~~G~ 88 (1140)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
No 144
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.58 E-value=4.2e-18 Score=181.22 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=110.6
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCC--CCCCHHHHHHHHHHc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFSAWL 654 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~ 654 (1140)
.++|++++|+||||||||||+++|+|...+ .++|++|++.++ +.+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999996531 368999988776 5679988865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH----HHHHHHHHHHhhCCcEeEEeCCCCC-------
Q 001146 655 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 723 (1140)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGq----rqRv~ia~al~~~p~illlDEPtsg------- 723 (1140)
..+.... .+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111111 23356677777776554432 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-hhCCCEEEEEecCC
Q 001146 724 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 753 (1140)
Q Consensus 724 LD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~ 753 (1140)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 145
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.56 E-value=4.6e-16 Score=193.10 Aligned_cols=133 Identities=20% Similarity=0.140 Sum_probs=97.7
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc-CceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
++.+++|+|++ |++++|+||||||||||||+|+|... +. .|.+ ... .+..+++++| +++.+++
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~--~G~~------vpa--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ--VGSF------VPA--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT--TTCC------BSS--SEEEECCCSE---EEEECCC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc--cCce------eeh--hccceeeHHH---hhccCCH
Confidence 45789999999 99999999999999999999999532 11 1221 111 1234667665 3444555
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH--hhCCcEeEEeCC--
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP-- 720 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al--~~~p~illlDEP-- 720 (1140)
.|++. .++|+|+++++.+++++ +.+|+++|||||
T Consensus 629 ~d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 629 SDDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp ------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred HHHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 44431 24799999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 001146 721 -TSGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 761 (1140)
Q Consensus 721 -tsgLD~~~~-~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 761 (1140)
|++||..+. ..+.+.|++ .|.|+|++||+. ++.+++
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 999999875 578887765 589999999985 344444
No 146
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=1.1e-15 Score=190.81 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=106.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.+++|+|++ ++|++++|+||||||||||||+|+|...... .|..+... +..++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 9999999999999999999999998521100 12111111 123455544 44555555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCC
Q 001146 646 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 646 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD 725 (1140)
|++... .+.+|++++ +++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 544211 113566665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 726 ARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 726 ~~~~~~v-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
+.....+ ...++.+.+ .|.++|++||+++ +.+++|++..+.+ |++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 9877665 678888877 4999999999974 4578898877765 67666543
No 147
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.55 E-value=1.6e-15 Score=160.33 Aligned_cols=83 Identities=14% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 4 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+...+.||||||||++|||||+.+|+||+|||||||||..+...+++.++++.+ .++||+++.|.+. .+.+.+|+|++
T Consensus 128 ~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~v~~ 205 (214)
T 1sgw_A 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIISSREEL-SYCDVNENLHK 205 (214)
T ss_dssp TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSCC-TTSSEEEEGGG
T ss_pred CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998764 4678888777655 55566677665
Q ss_pred ecCCeE
Q 001146 84 LSDGQI 89 (1140)
Q Consensus 84 L~~G~v 89 (1140)
+ .|++
T Consensus 206 ~-~~~~ 210 (214)
T 1sgw_A 206 Y-STKI 210 (214)
T ss_dssp G-BC--
T ss_pred e-CCcc
Confidence 4 4443
No 148
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.53 E-value=5e-15 Score=170.28 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=72.0
Q ss_pred ccccCccchhhhhHHHHHhh------cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc
Q 001146 6 MIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv------~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD 79 (1140)
....||||||||++||+||+ .+|+||+|||||+|||+.+...+++.++++.. .|.||+++.|. .+..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~--~~~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHD--REFSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESC--HHHHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecc--hHHHHhCC
Confidence 45689999999999999999 79999999999999999999999999998764 56777766554 45588999
Q ss_pred ceEEecCCeEEE
Q 001146 80 DIILLSDGQIVY 91 (1140)
Q Consensus 80 ~I~vL~~G~vvy 91 (1140)
++++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999975
No 149
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.52 E-value=2.9e-16 Score=179.37 Aligned_cols=164 Identities=18% Similarity=0.124 Sum_probs=98.6
Q ss_pred eeCc-eEEEeCceEEEEeCCCCCChHHHHHHHhcCC--cCc--eEEEE-EEEcCcccCcccccceEEEeccCCCCCCCCC
Q 001146 570 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGG--YITGN-ITISGYPKKQETFARISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 570 L~~v-s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~--~~~--~~~G~-i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 643 (1140)
|+++ ++.+++|++++|+||||||||||++.|++.. ++. ...|. +++++.+.. .++++++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 5555 6899999999999999999999999999954 211 11256 788776431 12233444444322221 2
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh-------hCCcEeE
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSIIF 716 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~-------~~p~ill 716 (1140)
+.||+.+ .. . .-|.+|+|++.++++++ .+|++++
T Consensus 196 v~~ni~~----------------------------~~---~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYV----------------------------AR---A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEE----------------------------EE---C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEE----------------------------Ee---c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 2222211 00 0 02567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECC
Q 001146 717 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 717 lDEPtsgLD~~~------------~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
+||||+++|+.. ...+++.|+++++ .|+|||+++|... +.-..++...... +|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 999999999852 3566666777665 4899999999865 3333444455554 466554444
No 150
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.52 E-value=2e-16 Score=164.03 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=102.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 658 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~ 658 (1140)
|++++|+||||||||||+++|+|... . +| +.++|.+... ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999754 2 46 7777766533 23567889999974 1111 111 01110
Q ss_pred CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHH-HHHH---HHhhCCcEeEEeC--CCCCCCHHHHHH
Q 001146 659 EVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 731 (1140)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv-~ia~---al~~~p~illlDE--PtsgLD~~~~~~ 731 (1140)
+..+ ..+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| |+..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 011233332 235999999988 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHhhCCCEEEE----EecCCCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 732 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
+.+.+ +...++|+ ++|+.+ ..+.|++..+. +|+++...+.+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~n 172 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKEN 172 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSSS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChHh
Confidence 54444 44455553 238764 24568887776 47877755433
No 151
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.52 E-value=3.9e-15 Score=169.50 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ..+...++++|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999965421 12444333333211 11112223333211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001146 656 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 735 (1140)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~ 735 (1140)
.++-.+ +||++|..+|++|++|||| |.++.. .
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 122222 9999999999999999999 666543 3
Q ss_pred HHHHhhCCCEEEEEecCCCHHHHHhhceEEEEec
Q 001146 736 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 736 l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 769 (1140)
+.++++.|+||++|+|+.+. .+.+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 34446679999999999873 488999999864
No 152
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.50 E-value=4.5e-16 Score=190.64 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=107.3
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC------cccccceEEEeccCCCCCCCCCHHHH
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
++.++. +||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.++|++|+..+++.+||+|+
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 344543 999999999999999999998653 24899999998742 12466789999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC------C
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------T 721 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP------t 721 (1140)
+.+........ + .++| ++++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~~------------------~--------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAGE------------------G--------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHCS------------------S--------------SCCC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcCC------------------c--------------cccc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 98753211000 0 0011 0112222223458999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCH------HHHHhh-----ceEEEEecCCEEEEECCC
Q 001146 722 SGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSI------DIFEAF-----DELFLMKRGGQEIYVGPL 779 (1140)
Q Consensus 722 sgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~------~~~~~~-----d~v~~l~~gg~~~~~g~~ 779 (1140)
+|||+..+..+.+.++++.++ +.++++++|+.+. .+.+.. ..++++.+ +..+..|+.
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~ 232 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTE 232 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccH
Confidence 999999999999999996533 6788899998762 222222 33566664 555555543
No 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.49 E-value=3.7e-14 Score=157.60 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=101.9
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
.+++|++++|+||||||||||++.+++.... |.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4889999999999999999999999984432 333 23433211 2346777665432 11112221 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC--CCCHHHH---H
Q 001146 656 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 730 (1140)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts--gLD~~~~---~ 730 (1140)
...... ..+++++.+++.+..+.. ...||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~~----~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSAE----ERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCHH----HHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcChh----hhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 112222 245667778777665443 356999998875 68899999999999999 9997443 7
Q ss_pred HHHHHHHHHh-hCCCEEEEEecCCC
Q 001146 731 IVMRTVRNTV-DTGRTVVCTIHQPS 754 (1140)
Q Consensus 731 ~v~~~l~~~~-~~g~tvi~~~H~~~ 754 (1140)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.48 E-value=3.9e-15 Score=160.66 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=104.8
Q ss_pred eeeeCceE-EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccc---eEEEeccCCCCCCCCC
Q 001146 568 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVT 643 (1140)
Q Consensus 568 ~iL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~---~~~~v~q~~~~~~~lT 643 (1140)
+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+.+.+.......+ ..++.+|+.... .++
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 45888886 8999999999999999999999999975331 1234444332221110000 001111100000 000
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc--EeEEeCCC
Q 001146 644 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 721 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~--illlDEPt 721 (1140)
.++...+.++ ... .....|.+|.++...+.....+|+ ++++||||
T Consensus 87 ------------------------~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 ------------------------IIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------------------------EEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------------------------EEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0000000000 000 012359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHhh-CCCEEEEEecCCC-------HHHHHhhceEEEEec
Q 001146 722 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKR 769 (1140)
Q Consensus 722 sgL--D~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~v~~l~~ 769 (1140)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.+.+|++++|++
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 99888999999999864 5899999999973 247788999999985
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.4e-15 Score=176.22 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=94.8
Q ss_pred EEEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 541 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
.+.++|++++|. ++.+++|+||+| +|+||||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 367777776552 245899999998 999999999999999999975421112222222211
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 621 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 621 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
....+.+++++|++.+.+.+||.||+.+..... .... ...+.+.+ + ..++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHH
Confidence 112345789999988888899999988754321 0000 11121111 1 136677888
Q ss_pred HHHHHHHHhhCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 701 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 701 Rv~ia~al~~~p~---illlDEPt-sgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
|++|||+++.+|+ +|++|||| .|||+... +.++++.. +.++|+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 9999999999999 99999999 69999873 34445543 788888888643
No 156
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.45 E-value=2e-15 Score=160.12 Aligned_cols=177 Identities=14% Similarity=0.051 Sum_probs=94.1
Q ss_pred EEEEeEEEEEecCchhhhcccccCceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc---CceEEEEEEEcCc
Q 001146 542 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 618 (1140)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~---~~~~~G~i~~~g~ 618 (1140)
++++|+++.|.. .++++ +.+++|+.++|+|+||||||||++.|+|... ..+..|.+...+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 678899988841 25777 8899999999999999999999999999651 0123454432111
Q ss_pred ccCcccccceEEEeccCCCC----CCCC---CHHHHHHHHHH-ccC----------CCCCCHHHHHHHHHHHHHHcCCcc
Q 001146 619 PKKQETFARISGYCEQNDIH----SPFV---TIYESLLFSAW-LRL----------SPEVDSETRKMFIDEVMELVELNP 680 (1140)
Q Consensus 619 ~~~~~~~~~~~~~v~q~~~~----~~~l---Tv~e~l~~~~~-~~~----------~~~~~~~~~~~~~~~~l~~~~l~~ 680 (1140)
-. .....-++ +.+-+ .+.- ..+..+..... .+. ....+.. +..+.+.++..++..
T Consensus 68 ~~----~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~~~~~~~~~~~~~~ 140 (210)
T 1pui_A 68 FE----VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL--DQQMIEWAVDSNIAV 140 (210)
T ss_dssp EE----EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHHHTTCCE
T ss_pred EE----ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh--HHHHHHHHHHcCCCe
Confidence 00 00000011 00000 0000 01111211111 000 0111221 122344555555543
Q ss_pred cccccccCCCCCcCCHHHHHH-HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCE
Q 001146 681 LRQSLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 745 (1140)
Q Consensus 681 ~~~~~~g~~~~~~LSgGqrqR-v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t 745 (1140)
.. +++. ...+|+||||| +..+++++.+|+++++|||||++|......+.+.|.++.++|.|
T Consensus 141 ~~---v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 141 LV---LLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EE---EEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EE---EEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 21 1111 23589999999 89999999999999999999999999999999999988765544
No 157
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.44 E-value=1.1e-13 Score=140.58 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=62.6
Q ss_pred ccccCccchhhhhHHHHHhh----cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 6 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv----~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
.+..||||||||++||++++ ++|++++|||||+|||..+...+.+.+++... ++++|+++ |+..+.+.+|+|
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivit---h~~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVIT---LRDVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEEC---SCHHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEE---ecHHHHHhCCEE
Confidence 35679999999999999996 56799999999999999999999999987643 33344444 456889999999
Q ss_pred EEec
Q 001146 82 ILLS 85 (1140)
Q Consensus 82 ~vL~ 85 (1140)
+.+.
T Consensus 137 ~~v~ 140 (173)
T 3kta_B 137 IGVS 140 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 158
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.44 E-value=2.6e-13 Score=137.88 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCcCCHHHHHHHHHHHHHhh----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE
Q 001146 691 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 766 (1140)
Q Consensus 691 ~~~LSgGqrqRv~ia~al~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 766 (1140)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. ...+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35699999999999999974 4699999999999999999999999998864 57899999985 56789999986
Q ss_pred Ee
Q 001146 767 MK 768 (1140)
Q Consensus 767 l~ 768 (1140)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 159
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.39 E-value=1.3e-16 Score=166.58 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=110.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 659 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 659 (1140)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...++++|.....+..|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999998732 36788888654321 123566665544455688888876542110000
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC--CHHHHHHHHHHH------HHhhCCcEeEEeCCCCCCCHHHHHH
Q 001146 660 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 731 (1140)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~L--SgGqrqRv~ia~------al~~~p~illlDEPtsgLD~~~~~~ 731 (1140)
...+++.+......+ ..+.+ |+|++|++.++. +++.+|+...+|| +||+.....
T Consensus 74 ---------~~~ild~~~~~~~~~------~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 ---------NDVVLDYIAFPDEAE------ALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp ---------CEEEEESCCCHHHHH------HHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred ---------CcEEEeeccCHHHHH------HHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 000111100000000 01234 888888888888 9999999988884 899988877
Q ss_pred HHHHHHHHhhCCCEEEEEecC-CCHHHHHhhceEEEEecCCEEEEECCCC
Q 001146 732 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPLG 780 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 780 (1140)
.+.++.+.+.+.++|.++|+ ++ ++.+.+|+|+ + .|+++..|+++
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 88888776667899999998 76 6889999999 4 68999999874
No 160
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.38 E-value=2.5e-13 Score=154.39 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCCccc-cCccchhhhhHHHHHhh---------cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCCh
Q 001146 3 GDEMIR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 72 (1140)
Q Consensus 3 G~~~~r-gLSGGQKqRIsIAraLv---------~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~ 72 (1140)
++...+ .+|||||||++||++|+ ++|+||+||||||+||+.....+++.+++.. .|+|++.| ...
T Consensus 258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~ 332 (359)
T 2o5v_A 258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP 332 (359)
T ss_dssp TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc
Confidence 445566 79999999999999999 8999999999999999999999999987632 45555544 432
Q ss_pred hHHhhccceEEecCCeEEEecCcchH
Q 001146 73 ETYDLFDDIILLSDGQIVYQGPRELV 98 (1140)
Q Consensus 73 ~t~~~fD~I~vL~~G~vvy~G~~~el 98 (1140)
.+|++++|++|++++.|+++++
T Consensus 333 ----~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ----GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ----TCSEEEEEETTEEEECCCTTTS
T ss_pred ----cCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999999876
No 161
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.38 E-value=4.2e-13 Score=162.02 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCcC-CHHHHHHHHHHHHHhhCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEE
Q 001146 691 VSGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 767 (1140)
Q Consensus 691 ~~~L-SgGqrqRv~ia~al~~~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 767 (1140)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4557 999999999999999999 99999999999999999999999999987 899999999964 56779999999
Q ss_pred ec
Q 001146 768 KR 769 (1140)
Q Consensus 768 ~~ 769 (1140)
.+
T Consensus 471 ~~ 472 (517)
T 4ad8_A 471 EK 472 (517)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 162
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.37 E-value=1.8e-14 Score=153.20 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=85.5
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 651 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 651 (1140)
+-.-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|++..++.+|+..
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~----- 81 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRD----- 81 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTT-----
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcC-----
Confidence 334467899999999999999999999999976532368999999876543 23455788988644333222200
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHH
Q 001146 652 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 731 (1140)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~ 731 (1140)
+.++.+.. .|. ..+.| +++ ..+++..+++++|| ||+.++..
T Consensus 82 -------------------~f~E~~~~-------~~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 82 -------------------AFLEHAEV-------FGN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp -------------------CEEEEEEE-------TTE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred -------------------HHHHHHHH-------Hhc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 00000000 000 01122 222 45566678999999 99999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCCC
Q 001146 732 VMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 732 v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
+.+.+. ++.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998775 5899999999865
No 163
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=3.2e-14 Score=163.83 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=109.7
Q ss_pred eeCceEEEeCceE--EEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 570 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 570 L~~vs~~i~~G~~--~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
|+++|+++++|++ ++|+||||||||||+|+|+|..-. |.. +... .....++.++|++|++.+++.+||.||
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCc-CCCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 999999999999999999997421 211 1110 111234578999999988888999999
Q ss_pred HHHHHHccCCCCCCHHH--------HHHHHHHHHHHc-CCcc----ccccc----cc--CCCCCcCCHHHHHHHHHHHHH
Q 001146 648 LLFSAWLRLSPEVDSET--------RKMFIDEVMELV-ELNP----LRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 708 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~-~l~~----~~~~~----~g--~~~~~~LSgGqrqRv~ia~al 708 (1140)
+.|+.. ..... .+...++.++.. ++.. ..|.. +. .+...+|+-.+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 876421 11110 122334444443 4331 12221 11 11123577766 7899999
Q ss_pred hhCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HhhCCCEEEEEecC
Q 001146 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 752 (1140)
Q Consensus 709 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~-~~~~g~tvi~~~H~ 752 (1140)
..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999988899888886 77779999888764
No 164
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.36 E-value=6.2e-13 Score=156.61 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=71.3
Q ss_pred CccchhhhhHHHHHhhcCc--eEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe---
Q 001146 10 ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL--- 84 (1140)
Q Consensus 10 LSGGQKqRIsIAraLv~~P--~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL--- 84 (1140)
+||||||||+||++|+.+| +||+|||||+|||..+...+.+.|++++ .++||+++.|. .++...+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~--~~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHL--AQIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSC--HHHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCc--HHHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999876 36676665554 5788999999999
Q ss_pred -cCCeEEEecC
Q 001146 85 -SDGQIVYQGP 94 (1140)
Q Consensus 85 -~~G~vvy~G~ 94 (1140)
.+|+++-...
T Consensus 372 ~~~G~~~~~~~ 382 (415)
T 4aby_A 372 VEDGRTVSHVR 382 (415)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCceEEEEE
Confidence 9999887643
No 165
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.36 E-value=3.3e-15 Score=156.09 Aligned_cols=142 Identities=15% Similarity=0.033 Sum_probs=89.2
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-cccceEEEeccCCCCCCCCCHHHHHHHHHHc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 654 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~ 654 (1140)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|+.. +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 467999999999999999999999999843 47899998764221 11234567777543 457899998765421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHH
Q 001146 655 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 734 (1140)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~ 734 (1140)
....... ..++.+++..++....+. + .....+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~-~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--A-RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--C-SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--C-CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000111111112111100 0 112359999999999999999999887 68877777766
Q ss_pred HHHHH
Q 001146 735 TVRNT 739 (1140)
Q Consensus 735 ~l~~~ 739 (1140)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66554
No 166
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.36 E-value=3.7e-12 Score=135.88 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=98.7
Q ss_pred eeeCce-EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 569 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 569 iL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.+.++. ++.. +. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~-----------------~~~~----~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDT-----------------EGGF----SP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEES-----------------SCCC----CH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEEC-----------------CCCC----CH-HH
Confidence 467776 4899999999999999999999999998 221 12233322 2111 11 11
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH--HHHHHHHHHHHhhC-CcEeEEeCCCCCC
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 724 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG--qrqRv~ia~al~~~-p~illlDEPtsgL 724 (1140)
+.-... . ..... +++++.+.+ ...+++ ++++++.+++++.+ |+++++||||+++
T Consensus 62 ~~~~~~-~--~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMAE-T--RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHH-T--TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHH-h--cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110000 0 01111 122222211 124444 36788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHhhC-CCEEEEEecCCCH------------HHHHhhceEEEEecC
Q 001146 725 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 770 (1140)
Q Consensus 725 D~~~--------~~~v~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~v~~l~~g 770 (1140)
|+.. ...+++.|++++++ |.|+|+++|.... .+...+|++++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 24566667777654 8999999997641 467789999999864
No 167
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.31 E-value=3.3e-13 Score=155.24 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=95.9
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
+|++++ +++|++++|+||||||||||+++|+|...+. .+|.|...|.+.. ...++.+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 577766 7999999999999999999999999975421 1588877666553 22345567777731
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
+++.. ..+ +.+|+++|..+|+++++|||+ |.++
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 12210 124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 729 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.. ..++. +..|.+++.++|..+ +.+.+||++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 34443 356899999999965 678889988774
No 168
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=2.8e-12 Score=145.24 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=71.2
Q ss_pred ccccCccchhhhhHHHHHhh----cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 6 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv----~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
..+.||||||||++||++|+ .+|+||+|||||++||..+...+.+.++++. .+++++++-|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~--~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHN--KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCC--TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECC--HHHHhhCceE
Confidence 45789999999999999996 7899999999999999999999999998853 36677776565 4688999987
Q ss_pred --EEecCC-eEEEecCcchHH
Q 001146 82 --ILLSDG-QIVYQGPRELVL 99 (1140)
Q Consensus 82 --~vL~~G-~vvy~G~~~el~ 99 (1140)
++|.+| ..+.....++..
T Consensus 292 ~~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp EEEEESSSCEEEEECCC----
T ss_pred EEEEEeCCEEEEEEEEcchhh
Confidence 778777 455556666554
No 169
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.29 E-value=5.7e-13 Score=152.90 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=100.1
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC-cccccceEEEec-cCCCCCCCCCHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-QETFARISGYCE-QNDIHSPFVTIYE 646 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-~~~~~~~~~~v~-q~~~~~~~lTv~e 646 (1140)
+++++|+.+++|++++|+||||||||||+++|+|..++. +|.|.++|.... ....++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 459999999999999999999999999999999987753 799999985321 122456788887 54221
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCH
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 726 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~ 726 (1140)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012233457777778888999999999986
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 727 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 727 ~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
....+.++.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2345566666443457899999965 57889999999864
No 170
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.28 E-value=5.3e-15 Score=170.82 Aligned_cols=167 Identities=8% Similarity=0.020 Sum_probs=99.1
Q ss_pred eeeCceEEEeC--ceEEEEeCCCCCChHHHHHHHhcCCcCceEE----EEEEEcCcccCcccccceEEEeccCCCCCCCC
Q 001146 569 LLNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITISGYPKKQETFARISGYCEQNDIHSPFV 642 (1140)
Q Consensus 569 iL~~vs~~i~~--G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~----G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 642 (1140)
+.+.|++.+++ |+.++|+||||||||||+++|+|...+ .. |++.+++... ..+...+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~-------------~~~~~~~~~ 221 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLG-------------GDEQAMQYS 221 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSS-------------SCTTSSCTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcC-------------CCcccCChh
Confidence 35789999999 999999999999999999999998663 35 4444421100 000001111
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC--cccccccccCCCCCcCCHHHHHHHHHHHHHh-hCCcEeEEeC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE 719 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~-~~p~illlDE 719 (1140)
.. +++.+... + .......+.+.+.+ .+..++. ...+|+|++||..+++++. .+|++++|||
T Consensus 222 ~~-~~I~~~~q---------~-~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 222 DY-PQMALGHQ---------R-YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp TH-HHHHHHHH---------H-HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred HH-HHHHHHHH---------H-HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 12 22332210 0 00000001010100 0111111 1236777788888888775 5999999999
Q ss_pred ---CC------CCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 720 ---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 720 ---Pt------sgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
|+ .++|...+..+.+.|+++.+ .|.++++++|. + +..+++|++.+++
T Consensus 286 ~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 286 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999988754 48899999975 3 4566777777665
No 171
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.27 E-value=1.6e-15 Score=171.35 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=97.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCcC------ceEEEEEEEcCcccCcc------------------cccceEEEe---c
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 633 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~~------~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~ 633 (1140)
++++|+|+||||||||+|.|.|...+ .+..|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999987521 02368888888765321 122334555 4
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hc-cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh
Q 001146 634 QNDIHSPFVTIYESLLFSA--WL-RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 710 (1140)
Q Consensus 634 q~~~~~~~lTv~e~l~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~ 710 (1140)
|+..+.+..++.||..++. .+ +.-.......+...++.+++.+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 6555555666666654320 00 0000000000111112233334444443332 2589999999999899999
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
+|+++ ||| ..+.+.++++. .+.||++++|.+.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67788888774 5899999999864
No 172
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.26 E-value=3e-12 Score=144.62 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=85.2
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCc-CceEEEEEEEc-CcccCcccccceEEEeccCCCCCCCCCHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~-g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 647 (1140)
+++++.. .+|++++|+||||||||||+|+|+|... + ..|+|.++ |.+.. ...++.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh
Confidence 4445543 4799999999999999999999999765 3 36888887 65442 2345678999999988888999984
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 708 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al 708 (1140)
. + ...+.++..+.+.++++.+++.+..+... .++| ||+||++||+++
T Consensus 282 ~-----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G-----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C-----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h-----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13455555667788899999988777653 4699 999999999875
No 173
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.2e-12 Score=154.11 Aligned_cols=87 Identities=6% Similarity=-0.066 Sum_probs=71.5
Q ss_pred cccCccchhhhhHHHHH--hhcCceE----eeeeC-CCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCC--h---hH
Q 001146 7 IRGISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA--P---ET 74 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAra--Lv~~P~I----LlLDE-pTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~--~---~t 74 (1140)
.++||||||||++|||+ |+.+|+| |+||| ||+|||.. ...+.+.+ +..+.|+|+.+|+++ . ..
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~ 307 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVK 307 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHH
Confidence 46799999999999999 9999999 99999 99999997 33333333 334667888889888 3 44
Q ss_pred Hhhccc-----eEEec-CCeEEEecCcchHH
Q 001146 75 YDLFDD-----IILLS-DGQIVYQGPRELVL 99 (1140)
Q Consensus 75 ~~~fD~-----I~vL~-~G~vvy~G~~~el~ 99 (1140)
-+.+|+ |++|+ +|+++ .|+++++.
T Consensus 308 ~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 308 KTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 578999 99999 99999 99987764
No 174
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.26 E-value=1.4e-11 Score=142.42 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCcCCHHHHHHH------HHHHHHhhC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 691 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 691 ~~~LSgGqrqRv------~ia~al~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
++.||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567889999 99999999999999999999999998874 3579999999974 5788999
Q ss_pred EEEEecCC
Q 001146 764 LFLMKRGG 771 (1140)
Q Consensus 764 v~~l~~gg 771 (1140)
+++|++.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998654
No 175
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.24 E-value=6.4e-12 Score=151.70 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=67.7
Q ss_pred cccC-ccchhhhhHHHHHhhcCc--eEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEE
Q 001146 7 IRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 83 (1140)
Q Consensus 7 ~rgL-SGGQKqRIsIAraLv~~P--~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v 83 (1140)
+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|++++. ++|||++.|. .++...+|++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~--~~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHL--AQIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCC--HHHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecC--HHHHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999998764 5677766554 567788999999
Q ss_pred ecCCe
Q 001146 84 LSDGQ 88 (1140)
Q Consensus 84 L~~G~ 88 (1140)
|.+|.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 96653
No 176
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.24 E-value=2.4e-14 Score=156.00 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=96.2
Q ss_pred CceEEEEeCCCCCChHHHHHHHh---cCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHc-
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL- 654 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~- 654 (1140)
++++++|+||||||||||+++|+ |... +..|++.++|.+... .....+.+++|+..+.+..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8765 346777777654321 1223344566777778888999999765321
Q ss_pred -------cCCCCCCHHHHHHHHHHHHH--HcC------------CcccccccccCCCCCcCCHHHHHHHHHHHHH-hhCC
Q 001146 655 -------RLSPEVDSETRKMFIDEVME--LVE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANP 712 (1140)
Q Consensus 655 -------~~~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al-~~~p 712 (1140)
... ....+ .++.+.+ .++ +....+.. ...||| |+ ++| +.+|
T Consensus 103 ~~~~~il~g~-~~~~~----~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 103 RGQHWLLDGF-PRTLG----QAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp TTSCEEEESC-CCSHH----HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCC
T ss_pred CCCeEEEECC-CCCHH----HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCC
Confidence 100 01111 1222221 122 11112222 345898 66 777 9999
Q ss_pred cEeEEe----CCCCCCCHHHHHHHHHHHHHHhhC
Q 001146 713 SIIFMD----EPTSGLDARAAAIVMRTVRNTVDT 742 (1140)
Q Consensus 713 ~illlD----EPtsgLD~~~~~~v~~~l~~~~~~ 742 (1140)
++++|| |||+|||..+...+.+.++++.++
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999 999999999999999999887654
No 177
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.22 E-value=9.3e-12 Score=127.77 Aligned_cols=78 Identities=6% Similarity=-0.036 Sum_probs=62.4
Q ss_pred ccccCccchhhhhHHHHH-----hhcCceEeeeeC--CCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec--CCChhHHh
Q 001146 6 MIRGISGGQKKRVTTGEM-----MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETYD 76 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAra-----Lv~~P~ILlLDE--pTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh--Qp~~~t~~ 76 (1140)
....||||||||++||++ |..+|++|+||| ||++||..+...+.+.+++ .++|++++.| |....+-+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHH
Confidence 455799999999999996 999999999999 9999999888777777653 5677889888 44444545
Q ss_pred hccceEEecCCeEEE
Q 001146 77 LFDDIILLSDGQIVY 91 (1140)
Q Consensus 77 ~fD~I~vL~~G~vvy 91 (1140)
.+|+ .+|++++
T Consensus 149 i~~r----~~~~i~~ 159 (178)
T 1ye8_A 149 IRRL----PGAVLIE 159 (178)
T ss_dssp HHTC----TTCEEEE
T ss_pred HHhc----CCcEEEE
Confidence 5565 5677776
No 178
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.21 E-value=7.1e-14 Score=142.16 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=84.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCcccCc------cccc-ceEE----EeccCCCCCCCCCHHHHH
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQ------ETFA-RISG----YCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~------~~~~-~~~~----~v~q~~~~~~~lTv~e~l 648 (1140)
++++|+||||||||||+++|+|...+ +...|.|.++|.++.. ..++ +.++ +++|+..++- +|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 58999999999999999999997543 2236999999987321 2333 3455 7888765440 00
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEe-------EEeCC
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 720 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~il-------llDEP 720 (1140)
.+.+ ....++++++. +. -.|+.++. +||||||||++|||+++++|++. .-|.|
T Consensus 77 -----------~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0111 11134566655 43 35777764 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHhhCC
Q 001146 721 TSG---LDARAAAIVMRTVRNTVDTG 743 (1140)
Q Consensus 721 tsg---LD~~~~~~v~~~l~~~~~~g 743 (1140)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33344556677765555544
No 179
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.21 E-value=9.8e-13 Score=153.06 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=102.8
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------c--ccceEEEeccCCCCCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 640 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~q~~~~~~ 640 (1140)
-+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3689999999999999999999999999999997653 258999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh-hCC-cEeEEe
Q 001146 641 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANP-SIIFMD 718 (1140)
Q Consensus 641 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~-~~p-~illlD 718 (1140)
.+|+++++.++..-. .+ -.+++..|+.+... .+-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998864311 00 00122222221111 12223357888888764 457 356566
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEec
Q 001146 719 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 751 (1140)
Q Consensus 719 EPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H 751 (1140)
+||+|.|.. +.++.+.+ .|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 688886654 22333332 4889999999
No 180
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.21 E-value=1e-11 Score=141.61 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=66.4
Q ss_pred ccccCccchhh------hhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcc
Q 001146 6 MIRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 6 ~~rgLSGGQKq------RIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD 79 (1140)
..+.||||||| |+++|++|+.+|++|+|||||+|||+.+...+.+.++++.. .++||+++-|. .++.+.+|
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCC
Confidence 45789999999 67888999999999999999999999999999999988664 46677776665 56889999
Q ss_pred ceEEec
Q 001146 80 DIILLS 85 (1140)
Q Consensus 80 ~I~vL~ 85 (1140)
+|++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 181
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.20 E-value=1.4e-11 Score=133.57 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=84.9
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc--CCcC---ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g--~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+-+++|++++|+||||||||||++.|++ ...+ +...|.+++++.+. . ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5799999999999999999999999998 3321 00135566655431 0 0000000
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH-HHHHHHHh--hCCcEeEEeCCCCCCCH
Q 001146 650 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 726 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR-v~ia~al~--~~p~illlDEPtsgLD~ 726 (1140)
....+. ... +++++.+.+ ....+..+..+ +.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 111111 111 112221111 01244444332 33344444 48999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHhhC-CCEEEEEecCCCHH------------------HHHhhceEEEEecC
Q 001146 727 R-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 770 (1140)
Q Consensus 727 ~-------~-----~~~v~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~~d~v~~l~~g 770 (1140)
. . ...+++.|++++++ |.|||+++|..... +...+|.+++|+++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 34556666666544 99999999965421 11278999999863
No 182
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.19 E-value=8.9e-12 Score=124.01 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.0
Q ss_pred hhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEecCCC
Q 001146 709 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 754 (1140)
Q Consensus 709 ~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~t-vi~~~H~~~ 754 (1140)
+.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999888777888 888999654
No 183
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.19 E-value=6e-13 Score=133.50 Aligned_cols=79 Identities=24% Similarity=0.104 Sum_probs=64.7
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHH
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 645 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 645 (1140)
++.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 346899999999999999999999999999999999976 4 3699999998764221111 2788988777 89999
Q ss_pred HHHHH
Q 001146 646 ESLLF 650 (1140)
Q Consensus 646 e~l~~ 650 (1140)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99865
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.18 E-value=1.3e-12 Score=151.31 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=98.1
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
-++++++++.|+.++|+|+|||||||||++|+|... .+.+.+... ....++++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999642 123333221 1223445544330 0111111110
Q ss_pred HHHHccCCCCCCHHHHH--HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 650 FSAWLRLSPEVDSETRK--MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 650 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+...............+ ++++.++..+++. +. ....||+||+||+.+|++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111100 1122233333332 11 1346999999999999999999999999 999997
Q ss_pred HHHHHHHHHHHH-hhCCCEEEEEecCCCHHHHHhhceEE
Q 001146 728 AAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 728 ~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
.+ ...+.+++. .+.|.+++.++..-...+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444443 34577766655433335666666654
No 185
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.14 E-value=6.5e-11 Score=139.66 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHHHh----hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 693 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 693 ~LSgGqrqRv~ia~al~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.+|+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999998866688999999984 5678899999997
Q ss_pred c
Q 001146 769 R 769 (1140)
Q Consensus 769 ~ 769 (1140)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.14 E-value=1.1e-11 Score=127.86 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=42.4
Q ss_pred hhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 001146 709 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 756 (1140)
Q Consensus 709 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 756 (1140)
+.+|++|+||||++ ++|+.....+.+.+.+..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999995 9999999999999988877899999999987643
No 187
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.13 E-value=5.4e-12 Score=141.95 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=95.4
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cccc--eEEEeccCCCCCCCCCHHHH
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTIYES 647 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~--~~~~v~q~~~~~~~lTv~e~ 647 (1140)
.++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++ .+.+++|+..+.|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 478999999999999999999999997553 258899998876321 1122 35599999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH
Q 001146 648 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 727 (1140)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~ 727 (1140)
+.++..... + ..+++..|+.+..+.. .++.-.|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d----------~vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--D----------VVLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--S----------EEEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--h----------hhHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 987532110 0 0012223332221111 1222238899988888888885554
Q ss_pred HHHHHHHHHHHHh-hCCCEEEEEecC
Q 001146 728 AAAIVMRTVRNTV-DTGRTVVCTIHQ 752 (1140)
Q Consensus 728 ~~~~v~~~l~~~~-~~g~tvi~~~H~ 752 (1140)
.++++.++.+. +.+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34455555555 348999999995
No 188
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.13 E-value=3.1e-13 Score=153.52 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=104.2
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cccceEEEeccCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHS 639 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~ 639 (1140)
+.+|+++|+++++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.+++++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3479999999999999999999999999999999996542 257888888765321 2345689999988776
Q ss_pred CCC------------CHHHHHHHH-HH----------------------cc-----CCCCCCHHHHH---HHHHHHHHHc
Q 001146 640 PFV------------TIYESLLFS-AW----------------------LR-----LSPEVDSETRK---MFIDEVMELV 676 (1140)
Q Consensus 640 ~~l------------Tv~e~l~~~-~~----------------------~~-----~~~~~~~~~~~---~~~~~~l~~~ 676 (1140)
+.. +++|.+... .. .. ..... .++.+ +.+.+....+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~-~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA-GDELQGIKKGIFELADMI 198 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------CCTTHHHHCSEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC-cccHHHHHHHHhccccEE
Confidence 532 233332110 00 00 00000 00000 0011111112
Q ss_pred CCcccccccccCCCCCcCCHHHHHHHHHHHHHhh------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001146 677 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740 (1140)
Q Consensus 677 ~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 740 (1140)
.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+.+.|.+..
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 22 112211 113589999999999999987 688887 99999999999999998764
No 189
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.12 E-value=3.1e-12 Score=141.74 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=84.7
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHH----
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW---- 653 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~---- 653 (1140)
+++.+++|.||||||||||.+.|++...+. | . . ++.+.+|+|++.+++ .+.++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~---g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK---Y------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH---H------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc---C------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 478899999999999999999999865421 1 0 1 344567799998886 488899887631
Q ss_pred c--c-CCCCCCHHHHHHHHHHHHHHcCCcc--c--ccccccCCCCCcCCHHHHHHHHHH--HHHhhCCcEeEEeCCCCCC
Q 001146 654 L--R-LSPEVDSETRKMFIDEVMELVELNP--L--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 724 (1140)
Q Consensus 654 ~--~-~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~~g~~~~~~LSgGqrqRv~ia--~al~~~p~illlDEPtsgL 724 (1140)
+ + .+...+.+ ...+.++.+.... . ....+. .....+||||+||+++| +++ +|+|||+|||++++
T Consensus 93 ~~~~g~p~a~d~~----~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDMK----LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCHH----HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHHH----HHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 1 1 12222222 2445555553320 0 011111 11256999999999997 555 99999999999999
Q ss_pred CHHH
Q 001146 725 DARA 728 (1140)
Q Consensus 725 D~~~ 728 (1140)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9864
No 190
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.02 E-value=7.6e-11 Score=120.42 Aligned_cols=69 Identities=12% Similarity=-0.026 Sum_probs=54.1
Q ss_pred cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchH----------------HHHHHHHHHHHHhHhcCCEEEEEecCCCh
Q 001146 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 72 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~----------------sa~~vv~~L~~~a~~~~~tiiitIhQp~~ 72 (1140)
..|||||||++|||++..+|++|+|||||+|||.. +...+.+.++++.++ |.|+|++. |..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vt--H~~ 159 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYIL--NSP 159 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEE--CSH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEe--CCH
Confidence 36999999999999999999999999999999998 447788888776655 66666554 455
Q ss_pred hHHhhccc
Q 001146 73 ETYDLFDD 80 (1140)
Q Consensus 73 ~t~~~fD~ 80 (1140)
+.+..++.
T Consensus 160 ~~~~~~~~ 167 (171)
T 4gp7_A 160 EEVEEVVF 167 (171)
T ss_dssp HHHHHEEE
T ss_pred HHhhhhhh
Confidence 55544443
No 191
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.02 E-value=2.1e-10 Score=135.33 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=64.3
Q ss_pred cccCccchhhhhHHHHHhh----cCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 7 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv----~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
...||||||||++||++|+ ++|++|+|||||++||..+...+.+.+++... .+++++++.|+ ..+...+|+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEE
Confidence 3459999999999999999 68999999999999999999999999987542 35566665554 67889999999
Q ss_pred Eec
Q 001146 83 LLS 85 (1140)
Q Consensus 83 vL~ 85 (1140)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 192
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.02 E-value=8e-13 Score=157.58 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=104.7
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 646 (1140)
..+++++++.+++|+.++|+|||||||||||++|+|..++. +|.|.++|.+.-.....+.++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 34789999999999999999999999999999999987644 6889998865211112344566665443222345554
Q ss_pred HHHHHHHccCC----CCCCHHHHHH------------------HHHHHHHHcCCcc---------cccccccCCCCCcCC
Q 001146 647 SLLFSAWLRLS----PEVDSETRKM------------------FIDEVMELVELNP---------LRQSLVGLPGVSGLS 695 (1140)
Q Consensus 647 ~l~~~~~~~~~----~~~~~~~~~~------------------~~~~~l~~~~l~~---------~~~~~~g~~~~~~LS 695 (1140)
.+.-..+.+.. .+....+... .++++++.+.... ..+..+. ....+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEEe
Confidence 44322221100 0111111000 0122333322211 0110000 113479
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEE--EecCCCHHHHHhh
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 761 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 761 (1140)
+|||||.+++. + | |+|||+.....+.+.+.++.+.|+|+++ ++|+++ ++.+.+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999876641 1 7 9999998777777777666666888875 888764 444444
No 193
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.00 E-value=2.2e-10 Score=132.18 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=64.0
Q ss_pred ccccCccchhhhh------HHHHHhhcC-ceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhc
Q 001146 6 MIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 78 (1140)
Q Consensus 6 ~~rgLSGGQKqRI------sIAraLv~~-P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~f 78 (1140)
..+.+|||||||+ ++|++|..+ |++|+|||||+|||..+...+.+.++++. .+.+|+++.|.| ++...+
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~--~~~~~~ 352 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHR--ELEDVA 352 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCG--GGGGGC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChH--HHHhhC
Confidence 3467999999988 567999999 99999999999999999999999998743 335677776765 467899
Q ss_pred cceEEec
Q 001146 79 DDIILLS 85 (1140)
Q Consensus 79 D~I~vL~ 85 (1140)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 194
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.00 E-value=2.1e-10 Score=132.38 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=86.8
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHH--hcCCcC---ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 649 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l--~g~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 649 (1140)
+-+++|++++|+||||||||||++.| .+..++ +...+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 67999999999999999999999955 454331 0112456666543100 0 1111
Q ss_pred -HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH-HHHHHHHHHHHHh--hCCcEeEEeCCCCCCC
Q 001146 650 -FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 725 (1140)
Q Consensus 650 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSg-GqrqRv~ia~al~--~~p~illlDEPtsgLD 725 (1140)
...++. ... +.+++.+.+. +..++ .+.+.+.-+.+++ .+|+++++||||+.+|
T Consensus 231 ~~a~~~g----l~~-------~~vleni~~~------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRFG----LDP-------DDALNNVAYA------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHcC----CCh-------HhHhhcEEEe------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 111111 111 1122211110 11222 2334444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHhhC-CCEEEEEecCCC------------------HHHHHhhceEEEEecC
Q 001146 726 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 770 (1140)
Q Consensus 726 ~~~~------------~~v~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~v~~l~~g 770 (1140)
+... ..+++.|++++++ |.|||+++|..+ ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 7533 5678888888754 999999999721 1245668999999863
No 195
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.00 E-value=2.3e-12 Score=136.37 Aligned_cols=148 Identities=13% Similarity=0.067 Sum_probs=80.8
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
.++|++++|+||||||||||+++|+|...+ |...|.|.++|....... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 579999999999999999999999997542 122456666554432211 11110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHH-HHHhhCCcEeEEeCCCCCCCHHHHHHHHH
Q 001146 656 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 734 (1140)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia-~al~~~p~illlDEPtsgLD~~~~~~v~~ 734 (1140)
.+...+... ..+.++.+...+..+....+.+ ..+|+||+||+++| ++++.++.++++|||.-
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------ 141 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------ 141 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG------------
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh------------
Confidence 000111111 1222222211111122222222 35899999999998 88888888888899841
Q ss_pred HHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 735 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 735 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
.++.+.--.+|++.+.....+.+...|
T Consensus 142 --~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 --RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp --GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred --HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 111222236777777655445556666
No 196
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=4.1e-10 Score=129.38 Aligned_cols=163 Identities=15% Similarity=0.023 Sum_probs=83.4
Q ss_pred EEEeCCCCCChHHHHHHHhc-CCcCceEEEEEEEcCcccCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 001146 583 TALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 660 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 660 (1140)
+.|.||||+|||||+++|++ ...+. .|.+.++|.+... ...+..+++++|.+.+.-..+ + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 89999999999999999999 34332 5788888765432 112345677877654311110 0 0000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001146 661 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740 (1140)
Q Consensus 661 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 740 (1140)
.... +++.++.+......+... .+|| +..+|+++++|||++ ||..+...+.+.+++..
T Consensus 105 ~~~~----~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRIV----IQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHHH----HHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chHH----HHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 1111 223333321111011110 2566 788999999999999 99999999999998764
Q ss_pred hCCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEECCCCcchhHHHHHHh
Q 001146 741 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 791 (1140)
Q Consensus 741 ~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~~f~ 791 (1140)
.+.++|+++|++..-.-.+-+| ...+.+.|++. .++.++..
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 4789999999986322222233 24455566653 33444443
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.96 E-value=2.2e-11 Score=136.20 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=79.8
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCcc--ccc-ceEEEeccCCCCC-----CCCCH
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTI 644 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~--~~~-~~~~~v~q~~~~~-----~~lTv 644 (1140)
.+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... ..+ +.+||++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34569999999999999999999999 7653 4799999 88766432 112 2579999998553 67899
Q ss_pred HHHH--HHH------HHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHH
Q 001146 645 YESL--LFS------AWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 707 (1140)
Q Consensus 645 ~e~l--~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~LSgGqrqRv~ia~a 707 (1140)
|++ .|. .+.+. .....+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPD--CTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTT--CCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 443 11221 0011112235789999999985 555543 4699999999999873
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.94 E-value=1.6e-12 Score=150.85 Aligned_cols=133 Identities=14% Similarity=0.021 Sum_probs=89.0
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-------ccccceEEEec------
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------ 633 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~------ 633 (1140)
..+|+++ + .++|++++|+|||||||||||++|+|...+. +|.|.+.+.++.. ...++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3467887 4 3899999999999999999999999975532 5888888877532 11223344433
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 001146 634 ---QNDIH--SPF----VTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 700 (1140)
Q Consensus 634 ---q~~~~--~~~----lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrq 700 (1140)
|++.. ++. .|+.+++.++..-.. ....+.. ..+ +.+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~~i-~rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---GAV-TRLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---HHH-HHHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---HHH-HHHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 77654 233 689999987642110 0111111 122 345667876543 2 2469999999
Q ss_pred HHHHHHHHhhCCcEeE
Q 001146 701 RLTIAVELVANPSIIF 716 (1140)
Q Consensus 701 Rv~ia~al~~~p~ill 716 (1140)
| ||++|+.+|++..
T Consensus 301 R--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPY 314 (418)
T ss_dssp E--EEEEECTTTCEEE
T ss_pred H--hhhhhcCCCCccC
Confidence 9 9999999999875
No 199
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=1.9e-12 Score=148.53 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=116.1
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCc----------CceEEEEEEEcCcccCc----ccccce---EEEeccCCCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYPKKQ----ETFARI---SGYCEQNDIH 638 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~----------~~~~~G~i~~~g~~~~~----~~~~~~---~~~v~q~~~~ 638 (1140)
.+++|+.++|+|+||||||||+|+|+|... -.+..|.+.++|..... ...++. ...+.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999321 12457999998854311 011122 2466677777
Q ss_pred CCCCCHHHHH--HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC--cE
Q 001146 639 SPFVTIYESL--LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 714 (1140)
Q Consensus 639 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p--~i 714 (1140)
.+..+..|++ .|...++. ++.++..++..+ +. .+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7766666655 34333321 111222222211 11 122356553 89 99
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHH-hhCCCEEEEEecCCCHHHHHhhceEE-EEecCC-EEEEECCCCc
Q 001146 715 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLGR 781 (1140)
Q Consensus 715 lllDEPtsgLD~~~~~~v~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~-~l~~gg-~~~~~g~~~~ 781 (1140)
+++|||+.++|+......++.+++. .+.|.|++ +|... ++.++||++. +|.+ | ++++.|+..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 9999999999999999999999888 66677764 99875 6889999999 8875 7 8888877653
No 200
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.91 E-value=2.7e-11 Score=134.10 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=61.5
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
...|||||||| ||||+++|+||+ ||+||+.++..+.. + .|+.++++.+|+| +|++
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----------------l-tH~~~~~~~aD~i-vl~~ 252 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----------------L-HSRVQTFRFEQPC-TDES 252 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------------G-TTTEEEEECCCCC-CCC-
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------------H-hCCHHHHHhCCEE-EEeC
Confidence 45799999999 999999999999 99999999876641 1 3788889999999 9999
Q ss_pred CeEEEecCcchHHHHHHhC
Q 001146 87 GQIVYQGPRELVLEFFASM 105 (1140)
Q Consensus 87 G~vvy~G~~~el~~~F~~~ 105 (1140)
|+++++|+|+++..+|..+
T Consensus 253 G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 253 GEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp --CCCCCCHHHHHHHHHHS
T ss_pred CEEEEeCCHHHHHHHHHHH
Confidence 9999999999997666543
No 201
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.88 E-value=2.1e-13 Score=143.17 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHH-HHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEEEe
Q 001146 704 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 704 ia~-al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 768 (1140)
+++ +++.+|++++|||+|+++|..+...+.+.|++..+. +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 688889999999999999999999999999876543 2335621 4679887765
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.80 E-value=5.1e-11 Score=135.61 Aligned_cols=151 Identities=15% Similarity=0.054 Sum_probs=93.9
Q ss_pred eeeeeCceEEEeCc-------eEEEEeCCCCCChHHHHHHHhcCCcC--ceEEEEEEEcCcccCc---ccccceEEEecc
Q 001146 567 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQ 634 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G-------~~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~---~~~~~~~~~v~q 634 (1140)
..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34788899888877 89999999999999999999996421 1345555554443321 112456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 001146 635 NDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 713 (1140)
Q Consensus 635 ~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~ 713 (1140)
.+.+.+ ++.|++.......... -.......+.++..++.+++.. +++.. ..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE--------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce--------
Confidence 877765 7888885443221100 0001111223444555555544 33332 46999999998654
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 714 IIFMDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 714 illlDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
.+||+.+..++.+.|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 78888888899999988764
No 203
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.78 E-value=4.9e-12 Score=139.52 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=85.1
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCC-CCCCCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 642 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~l 642 (1140)
..+++++++.+++| ++|+||||||||||+++|+|.... +.+.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45799999999999 999999999999999999997653 6889999765321 1223456666653 344555
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 643 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 643 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
++.|++......+ .... .+ .+....+.. ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r-----~~~~----~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRR-----SDRE----TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred Eeeehhhhhhccc-----CCCc----ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 6666654321110 0000 00 011222222 2469999999999999999999986 88753
No 204
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.75 E-value=1.3e-09 Score=114.63 Aligned_cols=51 Identities=12% Similarity=-0.115 Sum_probs=43.6
Q ss_pred chhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCC
Q 001146 13 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 70 (1140)
Q Consensus 13 GQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp 70 (1140)
|||||++|||||+.+|+||+||||||| +...+.+.++++ ..++||| +.|.+
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l--~~g~tii-vtHd~ 158 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL--GFGSKMV-VTGDI 158 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB--CTTCEEE-EEEC-
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh--cCCCEEE-EECCH
Confidence 999999999999999999999999999 677888988875 3577888 55543
No 205
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=5.1e-10 Score=124.17 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=66.6
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCcc-cccce-EEEeccCCCCCC----CCCHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTIY 645 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~q~~~~~~----~lTv~ 645 (1140)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|+..+.. ...+. .+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999765 34799988 77665321 11122 699999987665 6789
Q ss_pred HHHH--HHH------HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 001146 646 ESLL--FSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 701 (1140)
Q Consensus 646 e~l~--~~~------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqR 701 (1140)
|++. |.. .++........+....++++++.++|.+.+.... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 331 1221110011111234788999999976433221 2477777763
No 206
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.71 E-value=2e-10 Score=129.00 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=65.0
Q ss_pred eeeCceEEE-------------------eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCccccc
Q 001146 569 LLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQETFA 626 (1140)
Q Consensus 569 iL~~vs~~i-------------------~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~~~ 626 (1140)
+++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ +|...... .+
T Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~ 128 (308)
T 1sq5_A 50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HH
Confidence 578888877 89999999999999999999999996430012688888 88765322 23
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHHHHcc
Q 001146 627 RISGYCEQNDIHSPFVTIYESLLFSAWLR 655 (1140)
Q Consensus 627 ~~~~~v~q~~~~~~~lTv~e~l~~~~~~~ 655 (1140)
+.++++ |...+++.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 446788 7777778899999998866554
No 207
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.66 E-value=9.3e-08 Score=103.43 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=47.7
Q ss_pred HHHHHHHh--hCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHH-------HHHhhceEEEEec
Q 001146 702 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 769 (1140)
Q Consensus 702 v~ia~al~--~~p~illlDEPtsgL--D~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~d~v~~l~~ 769 (1140)
...++.++ .+|+++++|||++.+ |+......+..|.+++ +.|.|||+++|..... +.+.+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 589999999999988 5544455555665554 5689999999976531 4577899999975
No 208
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.66 E-value=9e-09 Score=114.51 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=74.4
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 651 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 651 (1140)
.+++..++|++++|+|||||||||+++.|++...+. .|+|.+.+.+.... ...|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~-------------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRA-------------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH-------------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccH-------------------HHHHH----
Confidence 345567899999999999999999999999965321 24555554432100 00111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH---HHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 652 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv---~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
.....+..++.. ....|+|+.+++ +|++++..+|+++++|||.. ...
T Consensus 151 -----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~ 200 (306)
T 1vma_A 151 -----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHT 200 (306)
T ss_dssp -----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSC
T ss_pred -----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhh
Confidence 122334445432 124789999999 99999999999999999974 233
Q ss_pred HHHHHHHHHHH
Q 001146 729 AAIVMRTVRNT 739 (1140)
Q Consensus 729 ~~~v~~~l~~~ 739 (1140)
...+++.|+++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555444
No 209
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.64 E-value=8.2e-08 Score=113.74 Aligned_cols=177 Identities=13% Similarity=0.126 Sum_probs=105.6
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-EEEEcCcccCcccccce-EEEeccCCCCCCCCCHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARI-SGYCEQNDIHSPFVTIYE 646 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~~~g~~~~~~~~~~~-~~~v~q~~~~~~~lTv~e 646 (1140)
.|+++.+-+++|+++.|.|+||+|||||+..+++..... .| .+.+.+.+.......++ .+.... ... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 488888889999999999999999999999998743210 11 22222222111111000 000000 000 0
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh--hCCcEeEEeCCCCCC
Q 001146 647 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 724 (1140)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~--~~p~illlDEPtsgL 724 (1140)
. ++. .....++. .++.+.++.++..+..-. . ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~------l~~-g~l~~~~~-~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPEDW-GKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHHH-HHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHHH-HHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 12333332 234455555543332211 1 1358999987 5677776 689999999999977
Q ss_pred CH--------HHHHHHHHHHHHHhhC-CCEEEEEec---------C--CCH-------HHHHhhceEEEEecC
Q 001146 725 DA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 770 (1140)
Q Consensus 725 D~--------~~~~~v~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~v~~l~~g 770 (1140)
++ .....+.+.|++++++ |.+||+++| + |.. .+.+.+|.|++|.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 42 3346777788888754 899999999 2 421 366789999999864
No 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.63 E-value=4.3e-09 Score=117.66 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=64.7
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEE---cCcccCccc--c-cceEEEeccCCC-----------
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI----------- 637 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~---~g~~~~~~~--~-~~~~~~v~q~~~----------- 637 (1140)
+++.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|.+..... . .+.+++++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34567999999999999999999999998764 4799999 887764311 1 134789999874
Q ss_pred -----CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 001146 638 -----HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSL 685 (1140)
Q Consensus 638 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 685 (1140)
++|.+|+ ||+.|.. +... .+.+.+++++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CNHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CCSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-CcCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788999 9888752 1111 11223578999999995 555544
No 211
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.61 E-value=6e-11 Score=127.65 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHh-cCCc
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 605 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~-g~~~ 605 (1140)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999 9754
No 212
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.58 E-value=8e-08 Score=109.22 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhC--CcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH----hhCCCEEEEEecCCCH-----
Q 001146 700 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 755 (1140)
Q Consensus 700 qRv~ia~al~~~--p~illlDEPtsgL----------D~---~~~~~v~~~l~~~----~~~g~tvi~~~H~~~~----- 755 (1140)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|.|||++.|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678888765 9999999999998 33 2223444555554 3459999999996431
Q ss_pred ----------HHHHhhceEEEEecCCEEEEECC
Q 001146 756 ----------DIFEAFDELFLMKRGGQEIYVGP 778 (1140)
Q Consensus 756 ----------~~~~~~d~v~~l~~gg~~~~~g~ 778 (1140)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14567898888876 45555554
No 213
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.58 E-value=7.2e-08 Score=107.13 Aligned_cols=118 Identities=20% Similarity=0.120 Sum_probs=79.3
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHH
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 650 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 650 (1140)
++++++ +|++++++|+||+||||++..|++..... .|++.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHh------------------HH-HHH--
Confidence 678887 99999999999999999999999965421 356666665432100 00 101
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC-CCCCCHHHH
Q 001146 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 729 (1140)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP-tsgLD~~~~ 729 (1140)
..+.+..++..... + .+-.-.+.+|.+|+++...+++++++||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 11234466789999998899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 001146 730 AIVMRTVRNT 739 (1140)
Q Consensus 730 ~~v~~~l~~~ 739 (1140)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887776654
No 214
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.52 E-value=1.6e-09 Score=127.90 Aligned_cols=166 Identities=12% Similarity=0.065 Sum_probs=92.6
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhc--CCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCC--CHHHH
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV--TIYES 647 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g--~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l--Tv~e~ 647 (1140)
.+++.+.++..++|.|++||||||+++.|.. ..... .+++.+.+.+.+...+.. ...+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 3677888899999999999999999999865 12111 133444333332211110 0001111 11111
Q ss_pred HHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH----------HHHHHHhhCCc-Ee
Q 001146 648 LLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-II 715 (1140)
Q Consensus 648 l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv----------~ia~al~~~p~-il 715 (1140)
...+.. ++ ...++.+++ .+.++..|+.+..+..... ...+|+||+||. .+++++...|. ++
T Consensus 229 ~~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 111110 10 001222233 3677778876654321000 124788887752 35666777898 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhh----CCCEEEEEecCCCH
Q 001146 716 FMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPSI 755 (1140)
Q Consensus 716 llDEPtsgLD~~~~~~v~~~l~~~~~----~g~tvi~~~H~~~~ 755 (1140)
++||++.-+|.. ...+.+.+.++++ .|.++|++||+|+.
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 999999998843 3455566655543 27799999999983
No 215
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.51 E-value=6.5e-08 Score=122.39 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=73.4
Q ss_pred CCccccCccchhhhhHHHHHh--hcCceEeeeeCCCCCcchHHHHHH-HHHHHHHhHhcCCEEEEEecCCChhHHhhccc
Q 001146 4 DEMIRGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraL--v~~P~ILlLDEpTSgLDs~sa~~v-v~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~ 80 (1140)
+...+++|+|++++..+|++| +++|++++|||||+|||+.....+ ...++.+.+..++|++++.|.| +..+++|+
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~ 793 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQ 793 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGT
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcc
Confidence 445678999999999999988 999999999999999999888777 4445555544578888887864 56689999
Q ss_pred eEEecCCeEEEecCcchHH
Q 001146 81 IILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~ 99 (1140)
+..+.+|++...|+.+++.
T Consensus 794 ~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 794 IPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CTTEEEEEEEEEEETTEEE
T ss_pred cceeEeeEEEEEecCCcEE
Confidence 9999999999999887764
No 216
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.48 E-value=1.5e-10 Score=128.35 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=79.5
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCCC-CCCCCC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 643 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~lT 643 (1140)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ..++.+++++|... ..|.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4689999999999 99999999999999999999654 46788887654211 11233456666542 456677
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcE
Q 001146 644 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 714 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~i 714 (1140)
+.|++......+... ....++.++.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777775432211100 000111122222221 24899999999999999999876
No 217
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.48 E-value=2.1e-08 Score=104.16 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001146 699 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738 (1140)
Q Consensus 699 rqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 738 (1140)
.++..+|++|+.+|+++++| ||++|.....++.+.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.46 E-value=1.4e-07 Score=104.70 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=84.9
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHHccCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 657 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~ 657 (1140)
++|++++++||||+||||+++.|++...+. .| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999865310 12 23556665542 244555554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHH
Q 001146 658 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 737 (1140)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~ 737 (1140)
+..++... ...+. +.-+.+|+ .+.+|+++++| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 01122 33355555 45999999999 99999876655544433
Q ss_pred HHh---hCCCEEEE-EecCCCHHHHHhhceEEEEecCCEEEEEC
Q 001146 738 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEIYVG 777 (1140)
Q Consensus 738 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 777 (1140)
-+. ..+.++++ ++|... ++.+.+|++..+.. +.++...
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk 248 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTK 248 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEEC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeC
Confidence 322 12334444 378653 67777787766654 4566643
No 219
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.46 E-value=2e-10 Score=125.45 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=80.2
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCC-CCCCCCC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFVT 643 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~lT 643 (1140)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ..++.+++++|.. ...|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4689999999999 99999999999999999999654 46788887654211 1122345566653 2456677
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCC
Q 001146 644 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 720 (1140)
Q Consensus 644 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEP 720 (1140)
+.|++......+... ....++.++.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 777774332211100 001112222222222 24899999999999999999976 4543
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.44 E-value=5.8e-08 Score=109.63 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=54.7
Q ss_pred cchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 001146 12 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 89 (1140)
Q Consensus 12 GGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G~v 89 (1140)
||||||++||+||..+|++|+|||||+. .+++.++.+ ..+++|++++.|.++ +.+.+|+|++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~-~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVL-CSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHH-HTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHH-hcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 8999999999999999999999999982 345666553 345556777777654 8899999999988864
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.43 E-value=1.1e-08 Score=107.43 Aligned_cols=61 Identities=25% Similarity=0.189 Sum_probs=39.9
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSP 640 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~ 640 (1140)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 56778999999999999999999999999753 24444443321 112345678888654433
No 222
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.41 E-value=2.8e-08 Score=116.50 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=45.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 621 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 621 (1140)
+|+|+|+++++ |+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 69999999999 99999999999999999999997664 3689999998764
No 223
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.40 E-value=4.3e-09 Score=129.37 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=97.6
Q ss_pred CceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCH
Q 001146 565 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 644 (1140)
Q Consensus 565 ~~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 644 (1140)
+...+++++++.+++|+.++|+||||+|||||+++|++...+. ..|.+.+++.+... ....++++++... -.+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~----~~~ 117 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQG----RRI 117 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHH----HHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchH----HHH
Confidence 3455789999999999999999999999999999999976532 23788888876543 3445788876420 011
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHH-------------------------HHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 001146 645 YESLLFSAWLRLSPEVDSETRKMF-------------------------IDEVMELVELNPLRQSLVGLPGVSGLSTEQR 699 (1140)
Q Consensus 645 ~e~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqr 699 (1140)
.|...-.+....... +.+... ....-+.+|..+..... ..++|+|++
T Consensus 118 ~e~~~~~~~~~~~~r---~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~ 189 (604)
T 3k1j_A 118 VEKYREKAKSQESVK---SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAH 189 (604)
T ss_dssp HHHHHHHHHHHTCC--------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGG
T ss_pred HHHHHHhhccchhhh---hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCcccccc
Confidence 111111111000000 000000 00011111211111111 136999999
Q ss_pred HHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001146 700 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 738 (1140)
Q Consensus 700 qRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~ 738 (1140)
|++..++....++.+|+|||... |++.....+.+.|++
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999988 898888888777764
No 224
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.33 E-value=6e-08 Score=111.92 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=57.8
Q ss_pred Cccc--hhhhhHHHHHhhc----------CceEeeeeCCCCCcchHHHHHHHHHHHHHhH----hc----CCEEEEEecC
Q 001146 10 ISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIH----IN----SGTAVISLLQ 69 (1140)
Q Consensus 10 LSGG--QKqRIsIAraLv~----------~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~----~~----~~tiiitIhQ 69 (1140)
+||| ||||++||++|.+ +|++++|||||+|||..+..++.+.+++... +. .++++++-|.
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 9999 9999999999999 9999999999999999999999999988642 22 2567777665
Q ss_pred CCh-hHHhhccce
Q 001146 70 PAP-ETYDLFDDI 81 (1140)
Q Consensus 70 p~~-~t~~~fD~I 81 (1140)
... .+-++.|+|
T Consensus 235 l~~~~~e~L~d~I 247 (413)
T 1tq4_A 235 VCHYDFPVLMDKL 247 (413)
T ss_dssp TTSTTHHHHHHHH
T ss_pred CCccCHHHHHHHH
Confidence 442 255555555
No 225
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.25 E-value=1e-06 Score=98.26 Aligned_cols=81 Identities=15% Similarity=0.035 Sum_probs=62.0
Q ss_pred ccCccch-hhhhHHHHHhhcCceEeeeeCCCC---C---cch-HHHHHHHHHHHHHhHhcCCEEEEEecCCC-h------
Q 001146 8 RGISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQPA-P------ 72 (1140)
Q Consensus 8 rgLSGGQ-KqRIsIAraLv~~P~ILlLDEpTS---g---LDs-~sa~~vv~~L~~~a~~~~~tiiitIhQp~-~------ 72 (1140)
..+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|++++++.+.|||++-|..+ .
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 3588898 77777 999999999999999999 5 455 55578999999988877889998877653 3
Q ss_pred --------------hHHhhccceEEecCCeE
Q 001146 73 --------------ETYDLFDDIILLSDGQI 89 (1140)
Q Consensus 73 --------------~t~~~fD~I~vL~~G~v 89 (1140)
.+...+|+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998875
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.22 E-value=1.6e-06 Score=102.14 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHh----hCCCEEEEEecCCC
Q 001146 696 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 754 (1140)
Q Consensus 696 gGqrqRv~ia~al~~~p~illlDEP----------tsgLD~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~ 754 (1140)
|++++|-.+++|....|.+|++||+ +.|.|......+.++|..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677776666666666553 34778999999874
No 227
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.19 E-value=1e-06 Score=91.90 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001146 702 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 740 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~ 740 (1140)
...|++|+.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999988886643
No 228
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.16 E-value=8.8e-07 Score=100.15 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.0
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|+.+- +-+++|+++.|.||||||||||+..+++.
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 47899999999999999999999999874
No 229
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.11 E-value=3.3e-06 Score=106.15 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=60.5
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEE-ecCCCHHHHHhhceEEEEec
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLMKR 769 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~v~~l~~ 769 (1140)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++++++ ||++. .+.+.+++..++.-
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v 267 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAV 267 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEEC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcccc
Confidence 3489999999999999999999999999996 999887777776666554456778885 88764 56777775444433
Q ss_pred CC
Q 001146 770 GG 771 (1140)
Q Consensus 770 gg 771 (1140)
.|
T Consensus 268 ~g 269 (773)
T 2xau_A 268 PG 269 (773)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 230
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.07 E-value=2.2e-07 Score=97.28 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=37.6
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc--cccceEEEeccC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQN 635 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~ 635 (1140)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3566799999999999999999999999864 5677887765321 111234566664
No 231
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.06 E-value=5.9e-06 Score=94.38 Aligned_cols=148 Identities=13% Similarity=0.121 Sum_probs=84.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcCCcC---------ceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHH---HHH
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE---SLL 649 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~~~---------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e---~l~ 649 (1140)
.++|+|++|||||||+|.|+|.... ++..|.+.++|.++. +....|++.+.+ ...|.. ++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 4999999999999999999996431 134688888885432 112234444321 111211 111
Q ss_pred HHHH----cc-CC-CCCC--HHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHH----HHH-hhCCcEeE
Q 001146 650 FSAW----LR-LS-PEVD--SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 716 (1140)
Q Consensus 650 ~~~~----~~-~~-~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia----~al-~~~p~ill 716 (1140)
.... +. .. .... ..+..+.+.++++.+++.+..--.+++. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1000 00 00 1111 1222334567777777654331122221 233788888988887 554 334444
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhh
Q 001146 717 MDEPTSGLDARAAAIVMRTVRNTVD 741 (1140)
Q Consensus 717 lDEPtsgLD~~~~~~v~~~l~~~~~ 741 (1140)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999998877653
No 232
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.04 E-value=9.1e-08 Score=101.58 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=55.0
Q ss_pred ccCccchhhhhHH-----HHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 8 RGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 8 rgLSGGQKqRIsI-----AraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
..+|||||||++| +++++++|++++|||||+++|..++..+.+.+++... . .| ++ | .+.||.|+
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~-~-~~--~~---h----~~~~d~ii 189 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI-E-LH--EA---N----LLNFNLSI 189 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH-H-HH--HH---T----TSCCSEEE
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-H-HH--hh---c----ccCCCEEE
Confidence 3579999999999 8999999999999999999999999999999876432 2 22 22 2 36788888
Q ss_pred EecC
Q 001146 83 LLSD 86 (1140)
Q Consensus 83 vL~~ 86 (1140)
++++
T Consensus 190 v~~~ 193 (218)
T 1z6g_A 190 INDD 193 (218)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 7753
No 233
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.97 E-value=1.7e-07 Score=99.40 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.3
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc-----------ccccceEEEeccC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 635 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~~v~q~ 635 (1140)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 89999999999999999999997653 35788888876521 1134567888873
No 234
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.95 E-value=5.9e-06 Score=104.31 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=61.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHH-HHHHHHhHhcCCEEEEEecCCChhHHhhccceEE-e
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-L 84 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv-~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~v-L 84 (1140)
.+.+|+|++|+..|+++ +.+|++++|||||+|||+.....+. ..++.+++..|+|++++.|.| +..+++|+.-- +
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v 809 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV 809 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence 45688999999999998 7899999999999999999888887 455555555688898888875 45566776531 3
Q ss_pred cCCeEEE
Q 001146 85 SDGQIVY 91 (1140)
Q Consensus 85 ~~G~vvy 91 (1140)
.++++-+
T Consensus 810 ~n~~~~~ 816 (918)
T 3thx_B 810 GNYHMGF 816 (918)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444443
No 235
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.94 E-value=6.6e-07 Score=96.51 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.2
Q ss_pred EEEEEeE-EEEEecCchhhhcccccCceeeeeCceEEEeC---ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 541 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 541 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|+ +++|. +..++|+|+|+++++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4889999 88872 123579999999999 9999999999999999999999854
No 236
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.91 E-value=9.6e-06 Score=91.01 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=81.5
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHHHH
Confidence 37777778999999999999999999999888753210 11 12334322 13332221
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
.++......+++.+..+ ..||.+|.+|++.|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111122222222221 1499999999999999999999999999865432
Q ss_pred HHHHHHHHHHHhhC--CCEEEEEec
Q 001146 729 AAIVMRTVRNTVDT--GRTVVCTIH 751 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~--g~tvi~~~H 751 (1140)
.+...++++.++ |..+|++-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 555666666543 677777755
No 237
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.91 E-value=8.6e-06 Score=104.53 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=61.7
Q ss_pred cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHH-HHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCC
Q 001146 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 87 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa-~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G 87 (1140)
.+|+|.+ ++++|++++++|++++|||||+|+|+... ..+++.++.+++..+.+++++.|.|. .+-..+|++.|+ +|
T Consensus 851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LG 927 (1022)
T ss_dssp HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EE
T ss_pred hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cC
Confidence 4566655 59999999999999999999999999874 44667777766544788888877654 455668998887 48
Q ss_pred eEE--EecCcch
Q 001146 88 QIV--YQGPREL 97 (1140)
Q Consensus 88 ~vv--y~G~~~e 97 (1140)
++. +.|+.++
T Consensus 928 ~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 928 HMACMVENECED 939 (1022)
T ss_dssp EEEEC-------
T ss_pred eEEEEEecCccc
Confidence 888 6676544
No 238
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.90 E-value=9.6e-06 Score=86.48 Aligned_cols=80 Identities=11% Similarity=-0.034 Sum_probs=64.8
Q ss_pred cCccchhhhhHHHHHhhcCce--EeeeeCCCCCc--chHHHHHHHHHHHHHhHhcCCEEEEEecCCC-------hhHHhh
Q 001146 9 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETYDL 77 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~--ILlLDEpTSgL--Ds~sa~~vv~~L~~~a~~~~~tiiitIhQp~-------~~t~~~ 77 (1140)
..|++|.++...+.....+|+ ++++||||+++ |......+++.|++++++.+.||+++.|..+ ..+-+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 358899888888777778999 99999999888 9988889999999988777888888877663 347788
Q ss_pred ccceEEecCCe
Q 001146 78 FDDIILLSDGQ 88 (1140)
Q Consensus 78 fD~I~vL~~G~ 88 (1140)
+|+|++|.+.+
T Consensus 183 ~d~vi~l~~~~ 193 (235)
T 2w0m_A 183 ADGIIRFRRMI 193 (235)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEe
Confidence 99999997653
No 239
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.87 E-value=2.6e-05 Score=89.16 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=48.1
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEe--cCCC
Q 001146 692 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 754 (1140)
Q Consensus 692 ~~LSgGqrqRv~ia~al~~~p~illlD-EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~--H~~~ 754 (1140)
..+|+||+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55555677789999 99999999988888887776543 77888888 7654
No 240
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.86 E-value=7.7e-06 Score=92.98 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=59.6
Q ss_pred ccchhhhhHHHHHhh-------cCceEeeeeCCCCCcchHH------------HHHHHHHHHHHhHhcCCEEEEEecCCC
Q 001146 11 SGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLLQPA 71 (1140)
Q Consensus 11 SGGQKqRIsIAraLv-------~~P~ILlLDEpTSgLDs~s------------a~~vv~~L~~~a~~~~~tiiitIhQp~ 71 (1140)
|++|+|++.++++++ .+|+++++||||++||+.. -.+++..|+++++..++||+++-|. +
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~-~ 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV-Q 286 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-C
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc-c
Confidence 678999999999999 6899999999999999852 2466777777777778888887664 4
Q ss_pred hhHHhhccceEEecCCeEEEecCcchH
Q 001146 72 PETYDLFDDIILLSDGQIVYQGPRELV 98 (1140)
Q Consensus 72 ~~t~~~fD~I~vL~~G~vvy~G~~~el 98 (1140)
...-..|+++.+...|++++++++..+
T Consensus 287 ~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 287 ARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp ---------------CCCCCTTCSEEE
T ss_pred cccccccCCccccCCcceEeecCcEEE
Confidence 344445677788889999999987766
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=2.6e-05 Score=82.29 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=60.8
Q ss_pred cCccch--hhhhHHHHHhhcC-ceEeeeeCCCCCcchHHH--------HHHHHHHHHHhHhcCCEEEEEecCCCh-----
Q 001146 9 GISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSSTT--------FQIVNCLRQNIHINSGTAVISLLQPAP----- 72 (1140)
Q Consensus 9 gLSGGQ--KqRIsIAraLv~~-P~ILlLDEpTSgLDs~sa--------~~vv~~L~~~a~~~~~tiiitIhQp~~----- 72 (1140)
..|+++ +++++.+++++.+ |+++++||||++||.... ..+++.|++++++.+.|++++-|.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 356665 5688888999986 999999999999997432 456777888887778888877665442
Q ss_pred -------hHHhhccceEEecCC
Q 001146 73 -------ETYDLFDDIILLSDG 87 (1140)
Q Consensus 73 -------~t~~~fD~I~vL~~G 87 (1140)
.+-..+|.+++|++.
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467789999999754
No 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=1.8e-06 Score=89.06 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=57.0
Q ss_pred cccCccchhhhh-HHHH---HhhcCceEeeeeC--CCCCcchHHHHHHHHHHHHHhHhcCCEEE--EEecCCChhHHhhc
Q 001146 7 IRGISGGQKKRV-TTGE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAV--ISLLQPAPETYDLF 78 (1140)
Q Consensus 7 ~rgLSGGQKqRI-sIAr---aLv~~P~ILlLDE--pTSgLDs~sa~~vv~~L~~~a~~~~~tii--itIhQp~~~t~~~f 78 (1140)
...+|||||+++ ++++ |+..+|+||+||| ||..+|... ++.++++.....++++ +++.|.+ + ....
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~~~~~~ilgti~vsh~~-~-~~~v 154 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLSTPGTIILGTIPVPKGK-P-LALV 154 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHHCSSCCEEEECCCCCSS-C-CTTH
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHhCCCcEEEEEeecCCCC-c-hHHH
Confidence 345999999999 4455 6899999999999 788888854 4555554443334443 3332333 3 4677
Q ss_pred cceEEecCCeEEEec
Q 001146 79 DDIILLSDGQIVYQG 93 (1140)
Q Consensus 79 D~I~vL~~G~vvy~G 93 (1140)
|+|..+.+|++++--
T Consensus 155 d~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 155 EEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHTTCCSEEEECC
T ss_pred HHHeecCCcEEEEeC
Confidence 999999999999854
No 243
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.80 E-value=4.9e-06 Score=91.00 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=41.2
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
...||||||||++|||+++. +++|||||+|||+.. ..+++.|+ . . .++|+.||
T Consensus 96 ~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~---~-~-~~vI~Vi~ 148 (270)
T 3sop_A 96 KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS---K-V-VNIIPVIA 148 (270)
T ss_dssp HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---T-T-SEEEEEET
T ss_pred HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---h-c-CcEEEEEe
Confidence 35699999999999999875 999999999999965 34444443 2 3 67777655
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.79 E-value=1.4e-07 Score=111.68 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=78.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc---cccceEEEeccCCC-CCCCCCH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVTI 644 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~lTv 644 (1140)
+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.+..++|... ..|...+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 588999999999 99999999999999999999654 35678888664321 01122334455432 3344444
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCC
Q 001146 645 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 722 (1140)
Q Consensus 645 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPts 722 (1140)
.|++......+.. .....++.++.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 4544321111100 00112223333333332 3788888888888888889987 788764
No 245
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.72 E-value=6.6e-06 Score=86.23 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH-HHHhhceEEEEe
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 768 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~v~~l~ 768 (1140)
.+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.++.. .+.++|+.+|..... +...||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678889999999888888754433 3345666555555544332 356888888875421 246688888885
No 246
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.71 E-value=2.6e-05 Score=85.99 Aligned_cols=63 Identities=5% Similarity=-0.030 Sum_probs=50.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCC--CcchHHH---HHHHHHHHHHhHhcCCEEEEEecCCC
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPA 71 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTS--gLDs~sa---~~vv~~L~~~a~~~~~tiiitIhQp~ 71 (1140)
....+|+||+||+ ++++.+|+++++||||+ ++|..+. .++++.|+++++..++|||++-|...
T Consensus 115 ~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 115 LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4567999998876 68889999999999999 9997544 78889999888777888888766443
No 247
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=1.4e-05 Score=83.27 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.5
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+++|||+++++|++++|+||+||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999999999999754
No 248
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.68 E-value=8.6e-06 Score=91.20 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=54.0
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcc-------cc-----cceEEEe-ccCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF-----ARISGYC-EQND 636 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-------~~-----~~~~~~v-~q~~ 636 (1140)
++++++.+++|++++++||||+||||++..|++.... ..|+|.+.+.+.... .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4789999999999999999999999999999996432 136777776654321 12 4457888 6654
Q ss_pred CCCCCCCHHHHHH
Q 001146 637 IHSPFVTIYESLL 649 (1140)
Q Consensus 637 ~~~~~lTv~e~l~ 649 (1140)
...|..++.+++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444444445443
No 249
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.64 E-value=8.4e-05 Score=85.08 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEec
Q 001146 694 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 751 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H 751 (1140)
.++.++++..+++..+.+|+++++.-..+..|... ....+.++.+...| +++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774333445443 34556666665555 57777766
No 250
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.60 E-value=3.5e-05 Score=95.84 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCccccCccchhhhhHHHHHh--hcCceEeeeeCC---CCCcchHHH-HHHHHHHHHHhHhcCCEEEEEecCCChhHHhh
Q 001146 4 DEMIRGISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDL 77 (1140)
Q Consensus 4 ~~~~rgLSGGQKqRIsIAraL--v~~P~ILlLDEp---TSgLDs~sa-~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~ 77 (1140)
+....++|+|+++|+.+|+++ +++|++++|||| ||+||..+. ..+++.+++ .+.|++++.|.+ +..++
T Consensus 630 d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~ 703 (765)
T 1ewq_A 630 DDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTAL 703 (765)
T ss_dssp -----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTC
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHh
Confidence 445578999999999999999 999999999999 999998764 567777764 467888877764 34444
Q ss_pred ccceEEecCCeEEEecC
Q 001146 78 FDDIILLSDGQIVYQGP 94 (1140)
Q Consensus 78 fD~I~vL~~G~vvy~G~ 94 (1140)
+ .--+.++++.....
T Consensus 704 ~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 704 G--LPRLKNLHVAAREE 718 (765)
T ss_dssp C--CTTEEEEEEEEECC
T ss_pred h--hhcceEEEEEEEEc
Confidence 3 21233455544433
No 251
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.58 E-value=2.6e-05 Score=79.80 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.4
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++++.+.+| +++|+||||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999 99999999999999999998743
No 252
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.57 E-value=3e-05 Score=86.11 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=48.8
Q ss_pred cccCccchhhhhHHHHHhhcCce--EeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCC-------hhHH-h
Q 001146 7 IRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETY-D 76 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~--ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~-------~~t~-~ 76 (1140)
.+.|| |||++|||+|+.+|+ +|+|| ||+|||+.+.. ++..+..+.|+++..|-.. .++. +
T Consensus 202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~ 271 (302)
T 3b9q_A 202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEE 271 (302)
T ss_dssp HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHH
Confidence 35688 999999999999999 99999 99999996542 2333334556655545221 1222 2
Q ss_pred hccceEEecCCeE
Q 001146 77 LFDDIILLSDGQI 89 (1140)
Q Consensus 77 ~fD~I~vL~~G~v 89 (1140)
.-+.|..+..|+.
T Consensus 272 ~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 272 LGIPVKFIGVGEA 284 (302)
T ss_dssp HCCCEEEEECSSS
T ss_pred HCCCEEEEeCCCC
Confidence 3346677776654
No 253
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.57 E-value=5.6e-06 Score=89.78 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=43.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHh---cCCcCceEEEEEE--------EcCcccCc----ccccceEEEeccCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCEQND 636 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~---g~~~~~~~~G~i~--------~~g~~~~~----~~~~~~~~~v~q~~ 636 (1140)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 7654 3467777 77776532 23445667777643
No 254
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.56 E-value=0.00015 Score=83.76 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=34.5
Q ss_pred hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh---CCCEEEEEecCCC
Q 001146 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 754 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~---~g~tvi~~~H~~~ 754 (1140)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88877777777765544 5788999999874
No 255
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.55 E-value=1.9e-05 Score=97.69 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=70.9
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCc---ccccceEEEeccCCCCCCCCCHHHHHHH
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 650 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 650 (1140)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|..... ...++.+.+..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3467889999999999999999999999643211123555 34433221 1112223333332111100 0
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHHHH
Q 001146 651 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 730 (1140)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~~~ 730 (1140)
. .....|+. |...++ .......-..+..++++| |+.|+|+.+..
T Consensus 74 -------------------------~-~~nliDTp----G~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 74 -------------------------H-RVFLLDAP----GYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -------------------------E-EEEEEECC----CSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -------------------------E-EEEEEeCC----CccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 0 00122221 111121 112222335678899999 99999988773
Q ss_pred HHHHHHHHHhhCCCEEEEEecCCC
Q 001146 731 IVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 731 ~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
. ++.+.+.+.++|++.|..+
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGG
T ss_pred H----HHHHHHccCCEEEEecCCc
Confidence 3 3333345888889999765
No 256
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.55 E-value=5.2e-06 Score=97.05 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=63.1
Q ss_pred ccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhH---hcCC-----EEEEEecCCChhHHhhcc
Q 001146 8 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH---INSG-----TAVISLLQPAPETYDLFD 79 (1140)
Q Consensus 8 rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~---~~~~-----tiiitIhQp~~~t~~~fD 79 (1140)
..+|||| |||+|| +++|++ |+|||+.+...+.+.+++..+ ..|+ ||++.-|.. + ...+|
T Consensus 257 ~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl--~-~~iad 323 (438)
T 2dpy_A 257 TRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ--Q-DPIAD 323 (438)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS--C-CHHHH
T ss_pred HHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc--c-chhhc
Confidence 4589999 999999 788887 999999999999999987544 1243 455444433 3 67899
Q ss_pred ceEEecCCeEEEecCcchHH
Q 001146 80 DIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 80 ~I~vL~~G~vvy~G~~~el~ 99 (1140)
++++|.+|+++..|+++++.
T Consensus 324 ~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 324 SARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHSSEEEEECHHHHHTT
T ss_pred eEEEEeCcEEEEeCCHHHcc
Confidence 99999999999999987764
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.53 E-value=3.5e-05 Score=80.55 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
++++|++++|+|||||||||++++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999764
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.49 E-value=3.1e-05 Score=79.70 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999764
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=3.9e-05 Score=78.46 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=29.8
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 617 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 617 (1140)
.+|++++|+||||||||||+++|++..++ ...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 36899999999999999999999986542 1345554433
No 260
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.48 E-value=0.00014 Score=81.53 Aligned_cols=130 Identities=12% Similarity=0.148 Sum_probs=80.2
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.-+ ++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEESS------SCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEECC------CCHHHHH
Confidence 37777778999999999999999999998888642110 01 123444322 2332222
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHHH
Q 001146 649 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 728 (1140)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~~~p~illlDEPtsgLD~~~ 728 (1140)
. ++......+++.+..+ | ...||.+|++|+..|...+.++++++.|+|...
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred H------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 1 1111111122222211 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHhhC-CCE--EEEEec
Q 001146 729 AAIVMRTVRNTVDT-GRT--VVCTIH 751 (1140)
Q Consensus 729 ~~~v~~~l~~~~~~-g~t--vi~~~H 751 (1140)
...+.+.++++.++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 33455566666543 666 777766
No 261
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.47 E-value=0.00017 Score=80.27 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHh--hCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHhhC-CC--EEEEEecCCCHHHHHhhceEE
Q 001146 694 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 765 (1140)
Q Consensus 694 LSgGqrqRv~ia~al~--~~p~illlDEPtsgLD~~~-~~~v~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~v~ 765 (1140)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898886 5566666 68999998 7888876 56677777777653 43 5666677654 4556666554
No 262
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.46 E-value=0.00051 Score=76.15 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCCCCCHH----------HHHHHHHHHHHHhh----CCCEEEEEecCCC---HHH
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 757 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPtsgLD~~----------~~~~v~~~l~~~~~----~g~tvi~~~H~~~---~~~ 757 (1140)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777788888899999999998776532 22234444433321 2356778888753 333
Q ss_pred HHhhceE
Q 001146 758 FEAFDEL 764 (1140)
Q Consensus 758 ~~~~d~v 764 (1140)
.+.|++.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4444443
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.45 E-value=9.2e-05 Score=78.66 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=55.2
Q ss_pred Cccch-hhhhHHHHHhhc-------CceEeeeeCCCCCcchH-------H-----HHHHHHHHHHHhHhcCCEEEEEecC
Q 001146 10 ISGGQ-KKRVTTGEMMVG-------PALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQ 69 (1140)
Q Consensus 10 LSGGQ-KqRIsIAraLv~-------~P~ILlLDEpTSgLDs~-------s-----a~~vv~~L~~~a~~~~~tiiitIhQ 69 (1140)
.++++ ++++..+++++. +|++++|||||++||.. + ..++++.|++++++.+.|||++-|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 34444 444667777776 99999999999999984 2 2368888888887778898887664
Q ss_pred CCh---hHHhhccceEEecCCe
Q 001146 70 PAP---ETYDLFDDIILLSDGQ 88 (1140)
Q Consensus 70 p~~---~t~~~fD~I~vL~~G~ 88 (1140)
.+. .+-..+|.+++|++|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 332 3667789999998754
No 264
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.42 E-value=9.4e-06 Score=90.62 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=34.7
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcch
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 42 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs 42 (1140)
....+|||||||++||++++.+|+||+|||||+.+|.
T Consensus 173 ~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 173 CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 3567999999999999999999999999999999986
No 265
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.42 E-value=3.1e-05 Score=82.65 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=34.7
Q ss_pred ceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 573 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 573 vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
-+...++|++++|.|+||||||||+++|+|. .|+|.+++.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445589999999999999999999999987 25677877764
No 266
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.38 E-value=2.6e-05 Score=81.28 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=38.8
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEE--EEcCccc
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPK 620 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i--~~~g~~~ 620 (1140)
..++.++..++|++++|+|||||||||++++|++.... .|.+ .++|.++
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCchh
Confidence 45667777899999999999999999999999986531 2444 7777654
No 267
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.37 E-value=8.1e-05 Score=93.17 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=62.2
Q ss_pred cCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHH-HHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCC
Q 001146 9 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 87 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~v-v~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G 87 (1140)
..|+|++ |++.+...+++|++++|||||+|+|+.....+ .+.++.+.+..+.+++++.|.+. ..+.+|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEE
Confidence 3555554 55555556899999999999999998766665 55566655435788888888764 45689998888888
Q ss_pred eEEEecCcchH
Q 001146 88 QIVYQGPRELV 98 (1140)
Q Consensus 88 ~vvy~G~~~el 98 (1140)
++.+....+++
T Consensus 746 ~~~~~~~~~~l 756 (800)
T 1wb9_A 746 HLDALEHGDTI 756 (800)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEcCCcE
Confidence 88776544333
No 268
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.36 E-value=0.001 Score=75.31 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.2
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999998886
No 269
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00011 Score=83.14 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=39.1
Q ss_pred cccCccchhhhhHHHHHhhcCce--EeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 7 IRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~--ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
...|| |||++|||+|..+|+ +|+|| ||+|||+.+.. ++.....+.|+++..|
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiTh 312 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK 312 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEES
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEec
Confidence 35688 999999999999999 99999 99999997542 2223334555555445
No 270
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.33 E-value=3.4e-05 Score=88.04 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.6
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999853
No 271
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.0002 Score=77.17 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=46.4
Q ss_pred HHHHhhcCceEeeeeCCCCCcc-----hHHHHHHHHHHHHHhHhcCCEEEEEecCCChh--------HHhhc-cceEEec
Q 001146 20 TGEMMVGPALALFMDEISTGLD-----SSTTFQIVNCLRQNIHINSGTAVISLLQPAPE--------TYDLF-DDIILLS 85 (1140)
Q Consensus 20 IAraLv~~P~ILlLDEpTSgLD-----s~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~--------t~~~f-D~I~vL~ 85 (1140)
.+..-..+|++++|||||++|| ......+.+.++.+ ++.|+||+++.|..... +...+ |+|++|+
T Consensus 128 ~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l-~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 128 YRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTIL-LEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHH-HHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHH-HHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 3333457999999999999998 55554566666664 45688999887765543 15788 9999995
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.29 E-value=0.00016 Score=78.45 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=49.2
Q ss_pred hhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecC
Q 001146 15 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 86 (1140)
Q Consensus 15 KqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~ 86 (1140)
.-|++||++|..+|+++++|||| |..+...++ +. + ..|.+|+++.|... ..+.+|++++|..
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~-~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMR---DLETVETAL---RA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-H-HTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-H-ccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 34899999999999999999999 887765443 32 3 35789988888754 6788999998864
No 273
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=0.0001 Score=77.33 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999765
No 274
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.24 E-value=1.3e-05 Score=83.99 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=56.4
Q ss_pred CccchhhhhHHHH---HhhcCceEeeeeCCCCCc----chHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceE
Q 001146 10 ISGGQKKRVTTGE---MMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 82 (1140)
Q Consensus 10 LSGGQKqRIsIAr---aLv~~P~ILlLDEpTSgL----Ds~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~ 82 (1140)
+.|.+.+|-..+. +|+.+|++++|||||+|| |.....++.+.++++....+.|++++.| ...++.+.+|+|+
T Consensus 121 ~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH-dl~~~~~~~d~i~ 199 (207)
T 1znw_A 121 LAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR-RLESACAELVSLL 199 (207)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC-CHHHHHHHHHHHH
Confidence 4455554444443 788999999999999998 7778889999988876555777777644 5668889999999
Q ss_pred Eec
Q 001146 83 LLS 85 (1140)
Q Consensus 83 vL~ 85 (1140)
+|.
T Consensus 200 ~l~ 202 (207)
T 1znw_A 200 VGT 202 (207)
T ss_dssp C--
T ss_pred Hhc
Confidence 985
No 275
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.00074 Score=75.87 Aligned_cols=138 Identities=21% Similarity=0.220 Sum_probs=75.3
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCC-cCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 653 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 653 (1140)
+-+++|+++.|.||+|+|||||...++... .+.. .| | ....+.|+.-+..+. ..+-......
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~g-----g-------~~~~vlyi~~e~~~~----~~~l~~~~~~ 164 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KG-----G-------LSGKAVYIDTEGTFR----WERIENMAKA 164 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GT-----C-------CSCEEEEEESSSCCC----HHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cC-----C-------CCCeEEEEECCCCCC----HHHHHHHHHH
Confidence 578999999999999999999999887631 1100 00 0 012234444332211 1111111111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH-HHHHHHHHHHHh---hCCcEeEEeCCCCCCCH---
Q 001146 654 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA--- 726 (1140)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgG-qrqRv~ia~al~---~~p~illlDEPtsgLD~--- 726 (1140)
+. .+. +++++.+-.. +..+.. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 165 ~g----~~~-------~~~~~~l~~~------------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~ 221 (324)
T 2z43_A 165 LG----LDI-------DNVMNNIYYI------------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP 221 (324)
T ss_dssp TT----CCH-------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC
T ss_pred hC----CCH-------HHHhccEEEE------------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc
Confidence 11 111 1222211110 112333 345677788888 57999999999976532
Q ss_pred -----HH----HHHHHHHHHHHhh-CCCEEEEEecC
Q 001146 727 -----RA----AAIVMRTVRNTVD-TGRTVVCTIHQ 752 (1140)
Q Consensus 727 -----~~----~~~v~~~l~~~~~-~g~tvi~~~H~ 752 (1140)
.. ..+++..|+++++ .+.+||++.|-
T Consensus 222 ~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 222 GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 2345555666654 48899988774
No 276
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.20 E-value=2.5e-05 Score=88.42 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred cccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhH-hcCC-----EEEEEecCCChhHHhhccc
Q 001146 7 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSG-----TAVISLLQPAPETYDLFDD 80 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~-~~~~-----tiiitIhQp~~~t~~~fD~ 80 (1140)
+..+|+|| |||++| +.+|++ |+|||+.....+.+.+++..+ .+|+ ||++.-|... -..+|+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 45689999 999999 578776 999999999999998877543 3454 5555444333 567899
Q ss_pred eEEecCCeEEEecCcchHH
Q 001146 81 IILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 81 I~vL~~G~vvy~G~~~el~ 99 (1140)
+.+|.+|+++..|+.+++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHCSEEEEBCHHHHTTT
T ss_pred eEEeeCcEEEEeCCHHHcC
Confidence 9999999999999887764
No 277
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.19 E-value=0.00018 Score=75.29 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=27.1
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++++|+|+|||||||+.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999865
No 278
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.18 E-value=5.5e-05 Score=88.91 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=49.3
Q ss_pred hCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhceEEE-EecCCEEEEECCCCc
Q 001146 710 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLGR 781 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~-~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~-l~~gg~~~~~g~~~~ 781 (1140)
.+|++|++||+..-.+. .+...+...+..+.+.|+.+|+++|.+..++..+.+++.- +. .|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 38999999999887764 6677888888888778899999999864332112222221 23 367777777763
No 279
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.10 E-value=0.0015 Score=76.80 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=92.0
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcccCcccccceEEEeccCCCCCCCCCHHHHH
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 648 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 648 (1140)
-|+.+.+-+++|+++.|.|++|+|||||..-++...... .| ..+.|+.=+ ++..+-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g---------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EG---------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TC---------------CCEEEEESS------SCHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CC---------------CeEEEEECC------CCHHHHH
Confidence 367777779999999999999999999998887532100 00 012222211 2222111
Q ss_pred H-H-HHHccCC------CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHh--hCCcEeEEe
Q 001146 649 L-F-SAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMD 718 (1140)
Q Consensus 649 ~-~-~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~LSgGqrqRv~ia~al~--~~p~illlD 718 (1140)
. + +.....+ ...+.++. .++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 1 0 1111100 11233332 2233333333211111 111 124676665 34566665 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHhhC-CCEEEEEecCC-----------CH-------HHHHhhceEEEEec
Q 001146 719 EPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQP-----------SI-------DIFEAFDELFLMKR 769 (1140)
Q Consensus 719 EPtsgLD~----------~~~~~v~~~l~~~~~~-g~tvi~~~H~~-----------~~-------~~~~~~d~v~~l~~ 769 (1140)
..+.-.+. .....+.+.|+.++++ +.+||+++|-. .. .+.+.+|.|++|.+
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98764332 1224667778887754 89999998832 10 23456788888864
No 280
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.09 E-value=0.00019 Score=73.89 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=25.6
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998543
No 281
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.08 E-value=0.00027 Score=69.65 Aligned_cols=31 Identities=26% Similarity=0.621 Sum_probs=25.5
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
+++.++.+.+| +++|+|||||||||++++|.
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455666665 99999999999999999986
No 282
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.05 E-value=0.00019 Score=75.02 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=46.0
Q ss_pred cccCccchhhh-hHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhH
Q 001146 7 IRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 57 (1140)
Q Consensus 7 ~rgLSGGQKqR-IsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~ 57 (1140)
...+||||||| +.++++++.+|+++++||||||||......+.+.+.+...
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 44689999999 8999999999999999999999999999999999987654
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.03 E-value=6.5e-05 Score=84.16 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=43.1
Q ss_pred cEEEEEeEEEEEecCchhhhcccccCceeeee--------------CceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 540 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+.|+|+++.|+. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 132 ~ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 132 NKILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TSCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 45678888887753 233566 89999999999999999999999999999874
No 284
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.01 E-value=3.4e-05 Score=85.95 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=32.2
Q ss_pred eeeeeCceEEEeCce------EEEEeCCCCCChHHHHHHHhcCCc
Q 001146 567 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~------~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
+..|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445777777777666 999999999999999999998643
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00026 Score=71.69 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=29.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.+|++++|+|||||||||+++.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998753 345566544
No 286
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.00029 Score=75.29 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHhhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhce
Q 001146 695 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 763 (1140)
Q Consensus 695 SgGqrqRv~ia~al~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 763 (1140)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+...+-+++++++--+.....+.+++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 445555542 33578999999999976 68777665444444443333456666655554444445543
No 287
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.00035 Score=80.33 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.9
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998753
No 288
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.95 E-value=0.00012 Score=76.30 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.0
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
.++|++++|+||||||||||++.|++...+. .|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccC
Confidence 5789999999999999999999999864311 2445554433
No 289
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.93 E-value=1.3e-05 Score=84.28 Aligned_cols=63 Identities=6% Similarity=0.107 Sum_probs=52.1
Q ss_pred cccCccch----hhhhHHHHHhhcCceEeeeeCCCCC-------cchHHHHHHHHHHHHHhHhcCCEEEEEecC
Q 001146 7 IRGISGGQ----KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLRQNIHINSGTAVISLLQ 69 (1140)
Q Consensus 7 ~rgLSGGQ----KqRIsIAraLv~~P~ILlLDEpTSg-------LDs~sa~~vv~~L~~~a~~~~~tiiitIhQ 69 (1140)
...+|+|| +||+++|++++.+|+++++||||++ ||+.++.++.+.+++....+|.|++.+.|+
T Consensus 87 ~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 87 VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34588886 5799999999999999999999999 999999899998876544567777766664
No 290
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.93 E-value=0.0011 Score=76.58 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCcEeEEeCCC-CC--CCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 001146 702 LTIAVELVANPSIIFMDEPT-SG--LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 752 (1140)
Q Consensus 702 v~ia~al~~~p~illlDEPt-sg--LD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 752 (1140)
-+++.+...+++++++|+|- .+ .|+....++.+.++.+......+++.+|.
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 34555555689999999997 34 78877777766655543334455555553
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.89 E-value=0.00032 Score=70.80 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=24.0
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
.|++++|+|||||||||++++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998643
No 292
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.87 E-value=0.00065 Score=75.51 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.9
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999754
No 293
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.85 E-value=0.001 Score=84.05 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=28.0
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
+.+++|+.++|+||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999999999754
No 294
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.85 E-value=0.00016 Score=80.26 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=39.5
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCC-cchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSg-LDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
..+++|||||||+.+||+++ +|++||||++ ||+... +.++++....+.++|++-|
T Consensus 110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 45789999999999999985 9999999985 999763 4444433323445555433
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.77 E-value=0.00074 Score=76.55 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=45.8
Q ss_pred HHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCCe
Q 001146 19 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 88 (1140)
Q Consensus 19 sIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G~ 88 (1140)
+||++|..+|+||++|||| |..+. +.+.+.+ ..|.|+++++|..+ ....+|+|++|..|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~-~~G~~vl~t~H~~~--~~~~~dRli~l~~~~ 247 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETI----RLALTAA-ETGHLVFGTLHTTS--AAKTIDRVVDVFPAE 247 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHH-HTTCEEEEEESCSS--HHHHHHHHHHTSCHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHH-hcCCEEEEEEccCh--HHHHHHHHhhhcCcc
Confidence 8999999999999999999 66554 3333333 45788888888665 348899999996653
No 296
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.69 E-value=0.00023 Score=85.23 Aligned_cols=42 Identities=38% Similarity=0.472 Sum_probs=33.4
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEE-EEE-EcCcc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIT-ISGYP 619 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G-~i~-~~g~~ 619 (1140)
.+++|++++|+|+||||||||+++|+|...+. .| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 47899999999999999999999999976432 33 464 66654
No 297
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.68 E-value=0.0024 Score=67.14 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=42.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CCCHHHHHhhceEEEEe
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 768 (1140)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355566777777999999999 56678888999999875
No 298
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.64 E-value=0.019 Score=64.89 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 55543 4689999999999999999999988765
No 299
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.53 E-value=0.0023 Score=64.53 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 300
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.52 E-value=0.0013 Score=68.54 Aligned_cols=30 Identities=27% Similarity=0.663 Sum_probs=24.9
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHh
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999985
No 301
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.51 E-value=0.011 Score=63.02 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=28.7
Q ss_pred hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh--CCCEEEEEec
Q 001146 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 751 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~--~g~tvi~~~H 751 (1140)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666555444443322 1358888888
No 302
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.49 E-value=0.0011 Score=70.29 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=26.2
Q ss_pred eeCceEEEe---CceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 570 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 570 L~~vs~~i~---~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
|.++|+.+. +|.+++|.||+||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 667777776 899999999999999999999988543
No 303
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.38 E-value=0.00066 Score=81.81 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=38.7
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCc
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 618 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 618 (1140)
.+++++++++ +|+.++|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3577788877 899999999999999999999998654 33677776664
No 304
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.34 E-value=0.0023 Score=75.04 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=30.5
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCc------C----ceEEEEEEEcCccc
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKT------G----GYITGNITISGYPK 620 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~------~----~~~~G~i~~~g~~~ 620 (1140)
-.++|+|+||+|||||+|.|+|... + ++..|.+.++|.+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3689999999999999999999632 1 12357888888753
No 305
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.33 E-value=0.00056 Score=77.46 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.+++++++.+++|.+++|+|++|+|||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999854
No 306
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.32 E-value=0.0017 Score=65.94 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999854
No 307
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.32 E-value=0.0064 Score=71.14 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.6
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+.+-+++|+++.|.|++|+|||||.--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 666666789999999999999999999877764
No 308
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.30 E-value=0.0049 Score=67.59 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.8
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998754
No 309
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.00031 Score=77.37 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=31.8
Q ss_pred cccCccchhhhhHHH--HHhhcCceEeeeeCCCCCcchHH
Q 001146 7 IRGISGGQKKRVTTG--EMMVGPALALFMDEISTGLDSST 44 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIA--raLv~~P~ILlLDEpTSgLDs~s 44 (1140)
.+.+||||+||+++| +++ +|+||++||+|+|||+..
T Consensus 132 ~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 132 DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 457999999999998 666 899999999999999854
No 310
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.29 E-value=0.0031 Score=64.64 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 689999998887 6799999999999999999874
No 311
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.26 E-value=0.00035 Score=85.29 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=62.4
Q ss_pred cchhhhhHHHHHhhcCceEeeeeCC------CCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCC-------hhHHhhc
Q 001146 12 GGQKKRVTTGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-------PETYDLF 78 (1140)
Q Consensus 12 GGQKqRIsIAraLv~~P~ILlLDEp------TSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~-------~~t~~~f 78 (1140)
|..++++.++.+...+|+++++||| |+|||.....++.+.+++.....++.+++.++|-. ..+.+..
T Consensus 131 ~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v 210 (608)
T 3szr_A 131 GISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 210 (608)
T ss_dssp CCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH
Confidence 3445666666667778999999999 99999999999999998865544444444333222 2233333
Q ss_pred c-----ceEEecCCeEEEecCcchHHH
Q 001146 79 D-----DIILLSDGQIVYQGPRELVLE 100 (1140)
Q Consensus 79 D-----~I~vL~~G~vvy~G~~~el~~ 100 (1140)
| .|+|++++..+..|+.+++.+
T Consensus 211 ~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 211 DPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred hhcCCceEEEecchhhcCcccHHHHHH
Confidence 2 378999999999999776654
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.24 E-value=0.0018 Score=68.54 Aligned_cols=36 Identities=31% Similarity=0.263 Sum_probs=26.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCCcC-ceEEEEEEE
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITI 615 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~ 615 (1140)
+.+++|+|||||||||+.++|++.... -...|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 568999999999999999999975321 123455554
No 313
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.21 E-value=0.0019 Score=66.00 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.2
Q ss_pred CceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 572 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 572 ~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999864
No 314
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.21 E-value=0.009 Score=66.91 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=33.9
Q ss_pred hhCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 709 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 709 ~~~p~illlDEPts-gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
..+|++|++||+.. .-|......+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999866 2344677788888887777777788877754
No 315
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.0067 Score=64.61 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=49.0
Q ss_pred Cccchhhh-hHHHHHhh--cCceEeeeeCCCCCcchH-------H-----HHHHHHHHHHHhHhcCCEEEEEecCCChh-
Q 001146 10 ISGGQKKR-VTTGEMMV--GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPE- 73 (1140)
Q Consensus 10 LSGGQKqR-IsIAraLv--~~P~ILlLDEpTSgLDs~-------s-----a~~vv~~L~~~a~~~~~tiiitIhQp~~~- 73 (1140)
.++.+..+ +.-.++++ .+|+++++||||+.+|.. + ...+++.|++++++.+.||+++-|..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 44444332 33344444 489999999999999975 3 24567777777777788888876533321
Q ss_pred -----------------HHhhccceEEecCCe
Q 001146 74 -----------------TYDLFDDIILLSDGQ 88 (1140)
Q Consensus 74 -----------------t~~~fD~I~vL~~G~ 88 (1140)
+-..+|.+++|++|+
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ------------------CCTTCEEEEEEECS
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 112789999998653
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.15 E-value=0.002 Score=67.07 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999999999998754
No 317
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.99 E-value=0.023 Score=64.49 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.1
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++..-+.|.||+|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455679999999999999999998753
No 318
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.93 E-value=0.025 Score=63.21 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.6
Q ss_pred eeCce-EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs-~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44433 5789999999999999999999988774
No 319
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.87 E-value=0.0011 Score=75.44 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.4
Q ss_pred eeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.+++++++.| +|+|+||+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34678888877 999999999999999998753
No 320
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.81 E-value=0.013 Score=67.05 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998643
No 321
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.81 E-value=0.0038 Score=70.74 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++.+++|+|++|||||||+|.|+|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999854
No 322
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.75 E-value=0.0012 Score=73.67 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.8
Q ss_pred eeeCceEEEeCceE--EEEeCCCCCChHHHHHHHhcCC
Q 001146 569 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 569 iL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++++++.+++|+. ++|+||+||||||+.++|++..
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 68888899999998 9999999999999999999853
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.75 E-value=0.0036 Score=64.90 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 324
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.67 E-value=0.0015 Score=67.59 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.9
Q ss_pred eeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 568 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 568 ~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46889999988885 689999999999999999874
No 325
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.59 E-value=0.011 Score=59.86 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.55 E-value=0.03 Score=60.21 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+..-+.|.||+|+|||||.+.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445889999999999999999874
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.48 E-value=0.0063 Score=62.10 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.5
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..++|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999998754
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.47 E-value=0.0067 Score=61.76 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 329
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.47 E-value=0.0068 Score=60.39 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 330
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.46 E-value=0.0056 Score=63.97 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=26.5
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
.+++|.+++|+|++||||||+.+.|++...
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999999988653
No 331
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.45 E-value=0.0067 Score=61.21 Aligned_cols=37 Identities=35% Similarity=0.352 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCCc-CceEEEEEEEcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISG 617 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g 617 (1140)
.+++|+|+||||||||++.|.+... .+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5899999999999999999987532 122235555544
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.40 E-value=0.011 Score=59.81 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=39.2
Q ss_pred HhhcCceEeeeeCCCC-CcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChh
Q 001146 23 MMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 73 (1140)
Q Consensus 23 aLv~~P~ILlLDEpTS-gLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~ 73 (1140)
..+.+|++|+||||++ ++|......+.+.+.... ..++++|++-|++..+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChhH
Confidence 4456899999999996 899988877777776643 4678888888877654
No 333
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.37 E-value=0.13 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.|..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999754
No 334
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.36 E-value=0.0057 Score=63.35 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+++|+|+|||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.32 E-value=0.0012 Score=66.57 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=21.3
Q ss_pred cCccchhhhhHHHHHhhcCceEe
Q 001146 9 GISGGQKKRVTTGEMMVGPALAL 31 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~IL 31 (1140)
++||||||||+|||+++++|+|.
T Consensus 103 glSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGC
T ss_pred CcCCCCCcEEEEEecccCCCccC
Confidence 59999999999999999999873
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.32 E-value=0.0028 Score=68.01 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=47.6
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhh-ccceEEe
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIILL 84 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~-fD~I~vL 84 (1140)
....+|||||||+++ ++++.+|++++||||...+|.. +.+. .+.+|+++.|. .....+. .+++
T Consensus 113 ~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~-~~~~~r~~~r~~--- 176 (245)
T 2jeo_A 113 EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS-DVRLSRRVLRDV--- 176 (245)
T ss_dssp EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH-HHHHHHHHHHHT---
T ss_pred ecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH-HHHHHHHHHHHH---
Confidence 346799999999988 6888999999999988877752 2222 25677777553 2233333 2333
Q ss_pred cCCeEEEecCcchHHHH
Q 001146 85 SDGQIVYQGPRELVLEF 101 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~~~ 101 (1140)
.+|+ +.+++.+.
T Consensus 177 ~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 177 RRGR-----DLEQILTQ 188 (245)
T ss_dssp C--------CHHHHHHH
T ss_pred HcCC-----CHHHHHHH
Confidence 5564 45566543
No 337
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.28 E-value=0.057 Score=59.17 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHH
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVL 600 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l 600 (1140)
+-+++| ++.|.||+|+|||||.--+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence 568899 9999999999999994433
No 338
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.25 E-value=0.11 Score=58.68 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.9
Q ss_pred EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 575 GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 575 ~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
+-+++|+++.|.||+|+|||||..-++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877754
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.18 E-value=0.0023 Score=73.23 Aligned_cols=87 Identities=8% Similarity=-0.089 Sum_probs=60.5
Q ss_pred cCccchhhhhHHHHHhh-cCceEeeeeC---CC------CCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhc
Q 001146 9 GISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 78 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv-~~P~ILlLDE---pT------SgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~f 78 (1140)
.+|+|++||..+++++. .+|++++||| |+ ++||......+.+.++++.+..+.++++.- +| .+.-+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-CHHHHHH
Confidence 46778899998888775 5999999999 54 689999999999999876655466666543 34 4667777
Q ss_pred cceEEecCCeEEEecCcchHH
Q 001146 79 DDIILLSDGQIVYQGPRELVL 99 (1140)
Q Consensus 79 D~I~vL~~G~vvy~G~~~el~ 99 (1140)
|.+.++++ ++..|+.+||.
T Consensus 336 ~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHH--HhcccchhHhh
Confidence 88877764 55566666654
No 340
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.18 E-value=0.005 Score=71.12 Aligned_cols=46 Identities=24% Similarity=0.095 Sum_probs=35.4
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCccc
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 620 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 620 (1140)
+++++. +|++++++|+||+||||++..|++..... .+.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 567777 89999999999999999999999854321 34566655543
No 341
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.0022 Score=72.55 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.4
Q ss_pred eeeeeCceEEEeCceE--EEEeCCCCCChHHHHHHHhcCC
Q 001146 567 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 567 ~~iL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467888888899998 9999999999999999999854
No 342
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.14 E-value=0.1 Score=62.06 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.8
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+..-+++|+++.|.|++|+|||||+--++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 555555689999999999999999999877654
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.14 E-value=0.01 Score=59.90 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
|.++.|.|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 344
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.13 E-value=0.0094 Score=63.02 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999854
No 345
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.12 E-value=0.0096 Score=59.57 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 346
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.08 E-value=0.025 Score=57.83 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=40.9
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CCCHHHHHhhceEEEEe
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 768 (1140)
+.+++++||.-- +|+. .++.++++++.|..||++.+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999654 6643 35667777777999999999 55577888999998775
No 347
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.05 E-value=0.00081 Score=69.03 Aligned_cols=82 Identities=6% Similarity=-0.027 Sum_probs=56.9
Q ss_pred ccchhhhhHHHH------HhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEe
Q 001146 11 SGGQKKRVTTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 84 (1140)
Q Consensus 11 SGGQKqRIsIAr------aLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL 84 (1140)
|+|++||+.++. +++.+|+...+|| +||...... .+.++... ..+.++|.+-|.--.++-+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence 999999998887 9999999988994 899877766 77776643 3456788775541347788899999
Q ss_pred cCCeEEEecCcchHH
Q 001146 85 SDGQIVYQGPRELVL 99 (1140)
Q Consensus 85 ~~G~vvy~G~~~el~ 99 (1140)
++|+++.+|+.+-+.
T Consensus 169 ~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 169 TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HCGGGSCC-------
T ss_pred hCCcEEEeecCCchh
Confidence 999999999987765
No 348
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.03 E-value=0.01 Score=60.26 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
No 349
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.03 E-value=0.0099 Score=63.27 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.0
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999999874
No 350
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.01 E-value=0.011 Score=67.53 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=26.0
Q ss_pred eEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 574 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 574 s~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-..++.|..++|+|+||+|||||+|.|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345678889999999999999999999986
No 351
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.91 E-value=0.0085 Score=64.63 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=23.7
Q ss_pred eeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 570 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 570 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++++++..++| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44555555555 8899999999999999999854
No 352
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.89 E-value=0.0063 Score=65.57 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=33.7
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCCcCceEEEEEEEcCcc
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 619 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 619 (1140)
++++.+ ..+++.++.|+|+|||||||+.+.|+..... +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 344444 5678899999999999999999999875432 234556543
No 353
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.86 E-value=0.0072 Score=69.82 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=38.6
Q ss_pred cCccchhhhhHHHHHhhcCce---EeeeeCCC-CCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 9 GISGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv~~P~---ILlLDEpT-SgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
+++++.+||++|||+++++|+ +|++|||| +|||+... .+++.| . .+.++|+.++
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L---~--~~v~iIlVin 175 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRL---H--EKVNIIPLIA 175 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHH---T--TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHH---h--ccCcEEEEEE
Confidence 467888999999999999999 99999999 69998653 444444 2 2566666555
No 354
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.83 E-value=0.0049 Score=66.15 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=37.1
Q ss_pred cccCccchhhhhHHHHHh-hcCceEeeee----CCCCCcchHHHHHHHHHHHHHhH
Q 001146 7 IRGISGGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 57 (1140)
Q Consensus 7 ~rgLSGGQKqRIsIAraL-v~~P~ILlLD----EpTSgLDs~sa~~vv~~L~~~a~ 57 (1140)
...+|| |+ ++| +.+|++++|| |||+|||..+...+.+.+++...
T Consensus 150 ~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 150 IHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp EETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 345788 66 677 9999999999 99999999999888888877543
No 355
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.71 E-value=0.014 Score=59.54 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998754
No 356
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.71 E-value=0.015 Score=59.34 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
No 357
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.70 E-value=0.014 Score=59.72 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.0
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999753
No 358
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.68 E-value=0.0096 Score=65.64 Aligned_cols=33 Identities=33% Similarity=0.228 Sum_probs=28.7
Q ss_pred eC-ceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 571 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 571 ~~-vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++ +++..+ |++++++|++|+||||++..|++..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45 777766 9999999999999999999999854
No 359
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.54 E-value=0.016 Score=62.47 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhcCC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 360
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.51 E-value=0.049 Score=56.30 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CCCHHHHHhhceEEEEe
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 768 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~v~~l~ 768 (1140)
+.+++++||.-- +|.. . ++.++++++.|..||++-+ .++.++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~---~-V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD---I-VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT---H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH---H-HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999976 6643 2 3667777777999999999 77788899999999886
No 361
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.45 E-value=0.019 Score=58.36 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999854
No 362
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.35 E-value=0.019 Score=57.32 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEeCCCCCChHHHHHHH
Q 001146 582 LTALMGVSGAGKTTLMDVL 600 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l 600 (1140)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.26 E-value=0.019 Score=58.12 Aligned_cols=25 Identities=40% Similarity=0.306 Sum_probs=22.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhc
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
..+..+.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 364
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.25 E-value=0.023 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 365
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.25 E-value=0.022 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 366
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.20 E-value=0.021 Score=62.62 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.6
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998643
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.14 E-value=0.025 Score=58.62 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+|.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999999999864
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.13 E-value=0.023 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998753
No 369
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.19 Score=57.96 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=22.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++-.=+.|-||+|+|||+|.+++++..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 333458899999999999999999854
No 370
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.23 Score=57.28 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++-.=+.|.||+|+|||+|.+++++..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 333448999999999999999999854
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.01 E-value=0.025 Score=58.78 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 372
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.99 E-value=0.027 Score=56.65 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCChHHHHHHHhc
Q 001146 581 VLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g 602 (1140)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 373
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.97 E-value=0.042 Score=60.44 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=32.1
Q ss_pred ceeeeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 566 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 566 ~~~iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888777 8899999999999999999999765
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.94 E-value=0.031 Score=63.77 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=44.1
Q ss_pred hhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 17 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 17 RIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
+.+|+++|..+|+++++|||| |..+. ..+++. + ..|.++++++|.. +....+|+++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~-~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-A-ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-H-TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-H-hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 679999999999999999999 66443 334443 3 3577887777763 4778889987774
No 375
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.24 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.0
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+-.=+.|.||+|+|||+|.++|++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 33348999999999999999999854
No 376
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.93 E-value=0.055 Score=62.10 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=50.6
Q ss_pred hhhhHHHHHhh--cCceEeeeeCCCCCcchHHH------------HHHHHHHHHHhHhcCCEEEEEecCCC---------
Q 001146 15 KKRVTTGEMMV--GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQPA--------- 71 (1140)
Q Consensus 15 KqRIsIAraLv--~~P~ILlLDEpTSgLDs~sa------------~~vv~~L~~~a~~~~~tiiitIhQp~--------- 71 (1140)
++++..+++++ .+|+++++||||+.+|+... .++++.|++++++.+.|||++-|-.+
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 34444444443 46999999999999996433 57888899988888999999877621
Q ss_pred ---------hhHHhhccceEEecCCe
Q 001146 72 ---------PETYDLFDDIILLSDGQ 88 (1140)
Q Consensus 72 ---------~~t~~~fD~I~vL~~G~ 88 (1140)
..+-..+|.++.|.+|+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECS
T ss_pred CCCccCCchhHHHHhcceEEEEEecC
Confidence 12345578888887664
No 377
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.92 E-value=0.025 Score=56.89 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+.|+|++||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998643
No 378
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.90 E-value=0.019 Score=63.41 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=36.3
Q ss_pred CccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEec
Q 001146 10 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 68 (1140)
Q Consensus 10 LSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIh 68 (1140)
++..+|||++|||+++.+|+.++| +||+.+...+++.+++..+..+.|+++..|
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh 256 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTK 256 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 566779999999999999994444 455555555566666555444555555545
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.87 E-value=0.025 Score=57.89 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999753
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.83 E-value=0.027 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++|+|++|||||||++.|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999874
No 381
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.81 E-value=0.11 Score=50.37 Aligned_cols=42 Identities=2% Similarity=0.078 Sum_probs=29.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 001146 711 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 753 (1140)
Q Consensus 711 ~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 753 (1140)
+..+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999975 5777777778777766433456677777654
No 382
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.78 E-value=0.024 Score=61.62 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 383
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.76 E-value=0.019 Score=66.21 Aligned_cols=71 Identities=7% Similarity=0.015 Sum_probs=51.6
Q ss_pred ccccCccchhhhhHHHHHhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccce
Q 001146 6 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 81 (1140)
Q Consensus 6 ~~rgLSGGQKqRIsIAraLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I 81 (1140)
....+|+|||||+++|++|...|.|+++ +.+|..++ ..++.+++..+..+.+++.+-......+-+++|.|
T Consensus 249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 3456999999999999999999999999 99998777 56666665555555565554333444555555554
No 384
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.73 E-value=0.029 Score=58.38 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.4
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 385
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.71 E-value=0.031 Score=57.54 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999865
No 386
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.71 E-value=0.22 Score=66.65 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.9
Q ss_pred EEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 576 AFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 576 ~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 6999999999999999999999998763
No 387
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.25 Score=56.12 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=24.4
Q ss_pred eCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 571 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 571 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.....-+.| +.|-||+|+|||+|.+++++..
T Consensus 175 ~~~gi~~prG--vLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 175 ESLGIAQPKG--VILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp HHHTCCCCCC--EEEESCSSSSHHHHHHHHHHHH
T ss_pred HhCCCCCCCc--eEEeCCCCCCHHHHHHHHHHhh
Confidence 3333333445 8899999999999999999854
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.70 E-value=0.015 Score=60.66 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+++|.|++||||||+++.|+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 389
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.69 E-value=0.2 Score=57.45 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.2
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356689999999999999999998653
No 390
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.66 E-value=0.2 Score=52.23 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=43.9
Q ss_pred hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC---------CCHHHHHhhceEEEEe
Q 001146 710 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ---------PSIDIFEAFDELFLMK 768 (1140)
Q Consensus 710 ~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~---------~~~~~~~~~d~v~~l~ 768 (1140)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ ++.++..++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 555555556679999999999 8888899999999885
No 391
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.56 E-value=0.037 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++.+++|.|++||||||+.+.|+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
No 392
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.3 Score=56.32 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=42.3
Q ss_pred HHHHhhCCcEeEEeCCCC----------CCCHHHHHHHHHHHHHHh----hCCCEEEEEecCCCHHHHHhhceEEEEecC
Q 001146 705 AVELVANPSIIFMDEPTS----------GLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 770 (1140)
Q Consensus 705 a~al~~~p~illlDEPts----------gLD~~~~~~v~~~l~~~~----~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 770 (1140)
..|-...|.|+|+||--+ +-|......+.++|..+- ..+..||.+|++|.. .|.-+ +..
T Consensus 268 ~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpAl-lRp- 340 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPAL-LRP- 340 (437)
T ss_dssp HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTTT-TST-
T ss_pred HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHHH-hCC-
Confidence 334446799999999753 224444555566666553 125689999998862 24433 232
Q ss_pred C---EEEEECCCCc
Q 001146 771 G---QEIYVGPLGR 781 (1140)
Q Consensus 771 g---~~~~~g~~~~ 781 (1140)
| +.++.+.|+.
T Consensus 341 GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 341 GRLDRKVEIPLPNE 354 (437)
T ss_dssp TSEEEEECCCCCCH
T ss_pred CccceeeecCCcCH
Confidence 3 3577787764
No 393
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.46 E-value=0.014 Score=59.86 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.5
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999754
No 394
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.45 E-value=0.0036 Score=64.81 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHH-HhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEec
Q 001146 20 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 85 (1140)
Q Consensus 20 IAr-aLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~ 85 (1140)
+++ +++.+|++++|||+||++|+.++..|.+.|.+.... +.++ | ++ +.||.|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a---~--~~-~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESS---K--EP-GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGG---G--ST-TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHh---h--cc-CCceEEEECC
Confidence 565 789999999999999999999999999998764432 1111 3 33 7899999876
No 395
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.44 E-value=0.033 Score=56.68 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 396
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.34 E-value=0.04 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.5
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|..+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999764
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.27 E-value=0.032 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=17.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
No 398
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.27 E-value=0.12 Score=50.52 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=33.5
Q ss_pred HhhcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCE-EEEEecCCCh
Q 001146 23 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT-AVISLLQPAP 72 (1140)
Q Consensus 23 aLv~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~t-iiitIhQp~~ 72 (1140)
+++.+|++|+||||++ +|...+..+.+.++.... ++++ +|++-|.+..
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESSCTT
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCCCHH
Confidence 4567899999999998 554447677787776554 4555 7777665543
No 399
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.17 E-value=0.042 Score=59.72 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.12 E-value=0.044 Score=56.05 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 401
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.10 E-value=0.038 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998753
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.04 E-value=0.039 Score=56.14 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 403
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.99 E-value=0.046 Score=54.38 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998853
No 404
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.91 E-value=0.043 Score=54.11 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 405
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.89 E-value=0.045 Score=60.67 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999853
No 406
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.89 E-value=0.084 Score=53.76 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=27.9
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.+++.-.. ..|..++|+||+|+|||||...|+.+.
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45655444 467899999999999999999998653
No 407
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.87 E-value=0.046 Score=57.59 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.7
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++.++.|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999853
No 408
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.86 E-value=0.049 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 409
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.85 E-value=0.043 Score=55.36 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 410
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.82 E-value=0.047 Score=56.37 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 411
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.80 E-value=0.048 Score=58.32 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHh---hCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhC---CCEEEEEecC
Q 001146 695 STEQRKRLTIAVELV---ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT---GRTVVCTIHQ 752 (1140)
Q Consensus 695 SgGqrqRv~ia~al~---~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~---g~tvi~~~H~ 752 (1140)
+.|++.+-.+.+++. .+++++++--+.+.++.. ...+++.+++.... +.++|+++|-
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEch
Confidence 334555555666653 788876665444455544 34555666654322 6789999985
No 412
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.79 E-value=0.054 Score=55.75 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+.+++|+|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
No 413
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.78 E-value=0.052 Score=53.69 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999874
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.74 E-value=0.73 Score=62.51 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 371 LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55554 3699999999999999999999887765
No 415
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.70 E-value=0.15 Score=59.72 Aligned_cols=79 Identities=10% Similarity=-0.020 Sum_probs=59.1
Q ss_pred cCccchhhhhHHHHHhh--cCceEeeeeCCCCCcchH--------HHHHHHHHHHHHhHhcCCEEEEEecC---------
Q 001146 9 GISGGQKKRVTTGEMMV--GPALALFMDEISTGLDSS--------TTFQIVNCLRQNIHINSGTAVISLLQ--------- 69 (1140)
Q Consensus 9 gLSGGQKqRIsIAraLv--~~P~ILlLDEpTSgLDs~--------sa~~vv~~L~~~a~~~~~tiiitIhQ--------- 69 (1140)
++|++|.+ +.+|.++ .+|+++++|+++.-.++. .-..+.+.|+.+|++.+.+|++.-|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 57888876 5677776 689999999999987431 22567888999898888888776551
Q ss_pred --CCh-------hHHhhccceEEecCCeE
Q 001146 70 --PAP-------ETYDLFDDIILLSDGQI 89 (1140)
Q Consensus 70 --p~~-------~t~~~fD~I~vL~~G~v 89 (1140)
|.. ++-..+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 432 56778999999987653
No 416
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.70 E-value=0.055 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
No 417
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.67 E-value=0.048 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 418
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.66 E-value=0.049 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998854
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.64 E-value=0.055 Score=56.34 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 420
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.64 E-value=0.052 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 421
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.59 E-value=0.051 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 422
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.55 E-value=0.1 Score=52.80 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877653
No 423
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.55 E-value=0.047 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 424
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.52 E-value=0.064 Score=57.86 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 425
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.51 E-value=0.062 Score=55.34 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 426
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.47 E-value=0.11 Score=58.70 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=43.2
Q ss_pred hcCceEeeeeCCCCCcchHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhccceEEecCCeEEEecCcc
Q 001146 25 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE 96 (1140)
Q Consensus 25 v~~P~ILlLDEpTSgLDs~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~t~~~fD~I~vL~~G~vvy~G~~~ 96 (1140)
.++|+|+++|||++ ||..+...+.+.+.+.. .++++|++-|++..-.-. +.+...++...+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~------l~sR~~~~~~~~~~ 194 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP------IKSQCLLIRCPAPS 194 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH------HHTTSEEEECCCCC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH------HHhhceEEecCCcC
Confidence 56899999999999 99998888888887632 456777777776531111 23455667766654
No 427
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.46 E-value=0.053 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.45 E-value=0.061 Score=54.74 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 429
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.44 E-value=1 Score=60.34 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred eeCce--EEEeCceEEEEeCCCCCChHHHHHHHhc
Q 001146 570 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 570 L~~vs--~~i~~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
|+.+- +-+++|+++.|.||+|+|||||.--++.
T Consensus 371 LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55554 3699999999999999999999877754
No 430
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.44 E-value=0.053 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 431
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.43 E-value=0.053 Score=55.17 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.42 E-value=0.053 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 433
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.40 E-value=0.055 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 434
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.40 E-value=0.05 Score=57.05 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999754
No 435
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.39 E-value=0.055 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 436
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.38 E-value=0.055 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 437
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.38 E-value=0.051 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
No 438
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.34 E-value=0.064 Score=55.90 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 439
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.34 E-value=0.071 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
No 440
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.33 E-value=0.068 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++-.++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999974
No 441
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.30 E-value=0.067 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 442
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.29 E-value=0.067 Score=54.76 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+++|+|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999753
No 443
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.28 E-value=0.054 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 444
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.26 E-value=0.058 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
No 445
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.22 E-value=0.068 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 446
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.19 E-value=0.059 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998854
No 447
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.15 E-value=0.061 Score=54.35 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEeCCCCCChHHHHHHHhcCC
Q 001146 583 TALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998753
No 448
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.13 E-value=0.049 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.-.++|+|++|+|||||++.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999753
No 449
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.11 E-value=0.07 Score=58.90 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=22.5
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 59999999999999999999853
No 450
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.03 E-value=0.058 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 451
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.02 E-value=0.065 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 452
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.02 E-value=0.29 Score=51.66 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=49.5
Q ss_pred hHHHHHhh--cCceEeeeeCCCCCc--chHHHHHHHHHHHHHhHhcCCEEEEEecCCChh-------HHhhccceEEecC
Q 001146 18 VTTGEMMV--GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE-------TYDLFDDIILLSD 86 (1140)
Q Consensus 18 IsIAraLv--~~P~ILlLDEpTSgL--Ds~sa~~vv~~L~~~a~~~~~tiiitIhQp~~~-------t~~~fD~I~vL~~ 86 (1140)
....+.++ .+|+++++||+|+.+ |.....+.+..+.+.+++.+.||+++.|..+.. +.+.+|.|+.|..
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33334444 479999999999988 554556777888887877888999887765532 4577899999964
No 453
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.01 E-value=0.068 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 454
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.00 E-value=0.071 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 455
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=91.99 E-value=0.062 Score=58.46 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
No 456
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.97 E-value=0.066 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 457
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.93 E-value=0.067 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 458
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.93 E-value=0.066 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 459
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.92 E-value=0.061 Score=60.93 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.7
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
No 460
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.88 E-value=0.069 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHhcC
Q 001146 583 TALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 583 ~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 461
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.88 E-value=0.066 Score=54.79 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999763
No 462
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.78 E-value=0.071 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 463
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.75 E-value=1.4 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.4
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
++.+++++|++|+||||++.-|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999999863
No 464
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.75 E-value=0.07 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999985
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.72 E-value=0.05 Score=59.72 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=18.3
Q ss_pred CceEEEEeCCCCCChHHHHHHHhc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g 602 (1140)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
No 466
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.72 E-value=0.068 Score=61.47 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCcEeEEeCCCCCCC---HHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 001146 711 NPSIIFMDEPTSGLD---ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 754 (1140)
Q Consensus 711 ~p~illlDEPtsgLD---~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 754 (1140)
.|.++++||.-.=++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578999999988774 66777788888888778999999999886
No 467
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.71 E-value=0.071 Score=56.06 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=20.8
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
..+|.++.+.|++||||||+.+.|+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999764
No 468
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.69 E-value=0.082 Score=56.64 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHhcC
Q 001146 581 VLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 581 ~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 469
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.66 E-value=0.097 Score=54.51 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=23.0
Q ss_pred eCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 578 RPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 578 ~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.+|.++++.|++||||||+.+.|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999764
No 470
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.65 E-value=0.17 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 471
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.64 E-value=0.075 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++++|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 472
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.57 E-value=0.085 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999999854
No 473
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.53 E-value=0.072 Score=53.07 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 474
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.51 E-value=0.084 Score=56.84 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 475
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.49 E-value=0.089 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.1
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
+.=.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 476
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.48 E-value=0.08 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 477
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.47 E-value=0.08 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999874
No 478
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.47 E-value=0.08 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 479
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.45 E-value=0.095 Score=55.20 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=30.1
Q ss_pred hCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHhhCCCE-EEEEecCC
Q 001146 710 ANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRT-VVCTIHQP 753 (1140)
Q Consensus 710 ~~p~illlDEPtsgL-D~~~~~~v~~~l~~~~~~g~t-vi~~~H~~ 753 (1140)
.+|+++++||...-- +......+.+.++...+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999975532 233366777888777666655 77777743
No 480
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=91.41 E-value=0.084 Score=59.48 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHhcC
Q 001146 580 GVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
No 481
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.34 E-value=0.083 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 482
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.33 E-value=0.095 Score=55.00 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 483
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.31 E-value=0.083 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 484
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.31 E-value=0.084 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.0
Q ss_pred EeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 577 FRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 577 i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999999853
No 485
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.28 E-value=0.087 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHh
Q 001146 580 GVLTALMGVSGAGKTTLMDVLA 601 (1140)
Q Consensus 580 G~~~al~G~sGaGKSTLl~~l~ 601 (1140)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 486
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.28 E-value=0.085 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999754
No 487
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.27 E-value=0.086 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 488
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.20 E-value=0.14 Score=56.90 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=23.8
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCCc
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRKT 605 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~~ 605 (1140)
++.++.|+||+|||||||...|+.+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997653
No 489
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.19 E-value=0.088 Score=53.69 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChHHHHHHHhc
Q 001146 582 LTALMGVSGAGKTTLMDVLAG 602 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g 602 (1140)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 490
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.19 E-value=0.096 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 491
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.18 E-value=0.087 Score=57.29 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 492
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.16 E-value=0.082 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 493
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.10 E-value=0.091 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.09 E-value=0.085 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 495
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.08 E-value=0.089 Score=56.56 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 496
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.06 E-value=0.16 Score=50.37 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=26.4
Q ss_pred eeeCceEEEeCceEEEEeCCCCCChHHHHHHHhcC
Q 001146 569 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 569 iL~~vs~~i~~G~~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
.++..-.. ..|.-++|.|+||+|||||...|..+
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 45554444 56889999999999999999888653
No 497
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.06 E-value=0.091 Score=53.95 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 498
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.085 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHhcCC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 499
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.02 E-value=0.1 Score=57.68 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.8
Q ss_pred CceEEEEeCCCCCChHHHHHHHhcCC
Q 001146 579 PGVLTALMGVSGAGKTTLMDVLAGRK 604 (1140)
Q Consensus 579 ~G~~~al~G~sGaGKSTLl~~l~g~~ 604 (1140)
|...+.|.||+|+||||+.+.|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999999853
No 500
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.02 E-value=0.094 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChHHHHHHHhcC
Q 001146 582 LTALMGVSGAGKTTLMDVLAGR 603 (1140)
Q Consensus 582 ~~al~G~sGaGKSTLl~~l~g~ 603 (1140)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
Done!