Query 001147
Match_columns 1140
No_of_seqs 144 out of 471
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 17:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 1E-147 2E-152 1217.8 73.9 1019 2-1138 20-1068(1082)
2 COG5101 CRM1 Importin beta-rel 100.0 4.7E-72 1E-76 615.0 59.7 919 4-1136 30-1031(1053)
3 KOG4541 Nuclear transport rece 100.0 6.1E-66 1.3E-70 560.4 38.1 682 405-1140 3-748 (748)
4 KOG2020 Nuclear transport rece 100.0 3.7E-44 8E-49 437.4 50.9 811 3-1009 27-891 (1041)
5 KOG2022 Nuclear transport rece 100.0 5E-25 1.1E-29 255.2 72.3 906 2-1137 22-978 (982)
6 KOG2021 Nuclear mRNA export fa 99.9 1E-15 2.2E-20 175.0 61.6 245 3-322 20-275 (980)
7 PF08767 CRM1_C: CRM1 C termin 99.8 3.5E-20 7.5E-25 207.7 20.9 280 811-1136 3-317 (319)
8 KOG4541 Nuclear transport rece 99.7 9.6E-15 2.1E-19 161.5 29.3 514 248-823 2-532 (748)
9 KOG2023 Nuclear transport rece 99.4 2.6E-08 5.7E-13 113.9 45.9 561 2-799 27-597 (885)
10 KOG2171 Karyopherin (importin) 99.2 1.7E-05 3.7E-10 97.9 61.4 134 3-144 19-152 (1075)
11 KOG2081 Nuclear transport regu 99.1 1.4E-07 3E-12 107.6 33.8 423 6-552 2-432 (559)
12 PF08389 Xpo1: Exportin 1-like 99.0 4E-09 8.7E-14 105.9 13.0 148 80-296 1-148 (148)
13 KOG1991 Nuclear transport rece 98.8 0.0016 3.4E-08 79.6 63.2 132 2-142 18-159 (1010)
14 KOG1241 Karyopherin (importin) 98.7 0.0027 5.9E-08 75.3 49.4 112 2-120 15-140 (859)
15 PF03810 IBN_N: Importin-beta 98.5 5.1E-07 1.1E-11 79.3 8.0 66 8-73 1-76 (77)
16 KOG1993 Nuclear transport rece 97.7 0.00058 1.2E-08 80.9 15.6 159 2-179 14-181 (978)
17 COG5656 SXM1 Importin, protein 97.4 0.56 1.2E-05 56.3 51.2 135 2-141 17-157 (970)
18 KOG1992 Nuclear export recepto 97.1 1.1 2.4E-05 54.5 55.9 166 2-181 19-194 (960)
19 COG5657 CSE1 CAS/CSE protein i 96.6 0.093 2E-06 64.2 18.9 133 2-143 18-156 (947)
20 COG5215 KAP95 Karyopherin (imp 95.9 5 0.00011 47.1 48.8 110 2-119 19-143 (858)
21 KOG2274 Predicted importin 9 [ 95.8 7.5 0.00016 48.3 45.8 130 2-141 18-159 (1005)
22 KOG2171 Karyopherin (importin) 64.9 4.4E+02 0.0094 34.7 34.7 222 746-1009 198-421 (1075)
23 PF12460 MMS19_C: RNAPII trans 59.8 3.3E+02 0.0072 32.2 17.3 220 24-327 193-412 (415)
24 KOG1991 Nuclear transport rece 55.4 5.8E+02 0.013 33.1 23.9 92 971-1086 496-588 (1010)
25 KOG1020 Sister chromatid cohes 55.0 7.2E+02 0.016 34.0 24.0 215 655-909 814-1038(1692)
26 PF03378 CAS_CSE1: CAS/CSE pro 48.1 3.7E+02 0.008 32.1 14.8 153 726-908 45-215 (435)
27 KOG1248 Uncharacterized conser 44.9 8.9E+02 0.019 32.2 23.8 60 946-1005 752-813 (1176)
28 KOG1062 Vesicle coat complex A 44.0 2.5E+02 0.0055 35.2 12.4 180 940-1133 212-397 (866)
29 PF08623 TIP120: TATA-binding 43.7 66 0.0014 32.7 6.6 56 946-1008 41-96 (169)
30 PF13513 HEAT_EZ: HEAT-like re 42.5 60 0.0013 25.7 5.1 55 946-1004 1-55 (55)
31 PF12348 CLASP_N: CLASP N term 38.7 4.7E+02 0.01 27.7 13.0 108 975-1107 51-161 (228)
32 PF08506 Cse1: Cse1; InterPro 36.3 7.5E+02 0.016 28.8 19.0 102 886-1000 267-369 (370)
33 PF02985 HEAT: HEAT repeat; I 35.7 52 0.0011 22.7 3.2 30 978-1007 1-30 (31)
34 PF10521 DUF2454: Protein of u 34.2 5.5E+02 0.012 28.5 12.9 98 93-211 106-203 (282)
35 PLN03076 ARF guanine nucleotid 30.4 1.8E+03 0.039 31.5 21.0 101 34-143 1150-1257(1780)
36 PF08167 RIX1: rRNA processing 26.2 2E+02 0.0043 29.1 6.9 117 946-1084 39-156 (165)
37 KOG0368 Acetyl-CoA carboxylase 25.8 1.4E+03 0.031 31.4 15.1 152 946-1130 839-991 (2196)
38 PF13251 DUF4042: Domain of un 25.6 5.7E+02 0.012 26.4 10.1 164 83-306 2-179 (182)
39 PF12333 Ipi1_N: Rix1 complex 25.3 1E+02 0.0023 28.4 4.3 35 974-1008 8-42 (102)
40 cd00020 ARM Armadillo/beta-cat 24.6 2.8E+02 0.006 25.4 7.4 108 20-138 7-119 (120)
41 PF11864 DUF3384: Domain of un 21.4 1.4E+03 0.031 27.3 23.3 136 824-1005 147-284 (464)
42 PF01465 GRIP: GRIP domain; I 21.0 1.9E+02 0.004 22.4 4.2 35 59-97 3-37 (46)
43 PF01602 Adaptin_N: Adaptin N 20.7 4.1E+02 0.0088 32.3 9.7 90 32-137 90-179 (526)
44 PF03224 V-ATPase_H_N: V-ATPas 20.7 1.2E+03 0.026 26.1 15.8 84 11-96 94-179 (312)
45 PF10441 Urb2: Urb2/Npa2 famil 20.2 1.1E+03 0.023 25.2 15.5 194 891-1103 3-214 (223)
46 PF12717 Cnd1: non-SMC mitotic 20.1 9.3E+02 0.02 24.5 13.2 53 946-1006 2-54 (178)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-147 Score=1217.83 Aligned_cols=1019 Identities=19% Similarity=0.283 Sum_probs=884.6
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChh
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEG 81 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~ 81 (1140)
|.+|++||+.|.+|..+|+++++|+.+|++++.||.++.|++.|.+.+.+. +.+|.++|.+||+|+++|+..++|.+++
T Consensus 20 ~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldir~Yilnylat~~Pk~~~ 98 (1082)
T KOG1410|consen 20 PTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDIRNYILNYLATGAPKLAP 98 (1082)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHhcCCCCccc
Confidence 578999999999999999999999999999999999999999999999988 4699999999999999999998899999
Q ss_pred HHHHHHHHHHHHHhHhccccCCCCc--hhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHHH
Q 001147 82 YVQAKISSVAAQLMKRGWLDFTSSD--KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC 159 (1140)
Q Consensus 82 ~v~~~l~~~~a~i~K~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k~ 159 (1140)
||...++|++|+|+|.||+|..+.+ -.+.+.++.++++. ++.+|+++|+.||+.+++||+.. +.+.+..+|||.
T Consensus 99 fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~-~~ve~~~igv~iLsqLvqemN~~---~~~~p~tkHRki 174 (1082)
T KOG1410|consen 99 FVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQM-DNVEHCIIGVQILSQLVQEMNQA---DGMDPSTKHRKI 174 (1082)
T ss_pred HHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhCC---CCCCcchHHHHH
Confidence 9999999999999999999965422 13577788888874 46899999999999999999998 668999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccCC
Q 001147 160 RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSS 239 (1140)
Q Consensus 160 ~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1140)
..+|||+.|.+||.+++.+|+........ ......++.++|++..+||+|||+|+..||+
T Consensus 175 as~FRD~sL~~vf~laln~L~~~~~~nln---d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs----------------- 234 (1082)
T KOG1410|consen 175 ASSFRDDSLFDVFSLALNLLKDNVDLNLN---DRAQLGLLMQVLKLNLNCLNFDFIGSSTDES----------------- 234 (1082)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhcccCcc---cHhHhhHHHHHHHHHhhhccccccccccccc-----------------
Confidence 99999999999999999999876521111 1113579999999999999999999999987
Q ss_pred CccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHHHHH
Q 001147 240 KRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHL 319 (1140)
Q Consensus 240 ~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl 319 (1140)
+||..++++|.+||..+.|++++++||++|..++ |+++..++.||+|+||+|+++|++.+ |.+|+
T Consensus 235 -sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp-----------~~~S~~alsclvqlASvRRsLFN~ae---Ra~yl 299 (1082)
T KOG1410|consen 235 -SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLP-----------PELSELALSCLVQLASVRRSLFNGAE---RAKYL 299 (1082)
T ss_pred -cccccceecCcHHHHHhcCchHHHHHHHHhccCC-----------chhhHHHHHHHHHHHHHHHHHhCCHH---HHHHH
Confidence 8999999999999999999999999999999865 45899999999999999999997766 89999
Q ss_pred HHHHHhhhhhcCChhHHHHHhhhCC-ChhhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHH---HHH
Q 001147 320 LQLLSGILEWVDPPDVVAQAIESGK-SESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVV---KVL 395 (1140)
Q Consensus 320 ~~~l~~~~~~l~~~~~~~~~~~~g~-~~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~---~~~ 395 (1140)
.++++|+..++++|. |+ |+.+||||||+|.|+++|+ |.+++.+++. |.+++ ..+
T Consensus 300 ~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNY-------------QL~ELv~v~~-Y~e~irLiAeF 357 (1082)
T KOG1410|consen 300 QHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNY-------------QLGELVKVEC-YPEVIRLIAEF 357 (1082)
T ss_pred HHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhh-------------hhHhhhccCC-cHHHHHHHHHH
Confidence 999999999998754 55 5699999999999997775 5566655555 55554 445
Q ss_pred hhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCCccchhhccHH
Q 001147 396 MMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASIS 475 (1140)
Q Consensus 396 ~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d~~e~~~~d~~ 475 (1140)
+..+...|+|+.+|.+++|.+|.+|+.++||+ +...|+.+..++++|..+||.+|+...+... .|+ -|+|.||..
T Consensus 358 Tv~SLq~wefa~nSvyyLlt~WqRmvaSVPyv--k~~~phlLd~y~PeIt~afi~SRl~sV~~iv--rd~-~d~PLdd~~ 432 (1082)
T KOG1410|consen 358 TVTSLQHWEFAPNSVYYLLTLWQRMVASVPYV--KNTEPHLLDTYCPEITKAFITSRLQSVEIIV--RDG-LDDPLDDTG 432 (1082)
T ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhcCCcc--cCCChHHHhhhcHHHHHHHHHHHhhhhheec--ccC-CCCcchhhH
Confidence 56677889999999999999999999999996 4567888889999999999999999876543 322 456777788
Q ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcc--cCCCCC--chhHH-HHHHHHHHHhhHhccCCCCCccCChh
Q 001147 476 AMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP--TETLE-ELYSLLLITGHVLADEGEGEIPVVPN 550 (1140)
Q Consensus 476 ~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~--~~~~~~--~~~~E-~L~Wli~i~g~~l~~~~~ge~~~ip~ 550 (1140)
...++++.++++||+.|+.|+.+|.++|++..+.|.+. +++.++ ....| +|.|+|+++|.++++...+-
T Consensus 433 ~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~------ 506 (1082)
T KOG1410|consen 433 AVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTAT------ 506 (1082)
T ss_pred HHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceeccc------
Confidence 88999999999999999999999999999999988764 233332 34455 99999999999998885331
Q ss_pred hHhhhhhhhhcccCch--HHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCC
Q 001147 551 AIQTHFVDTIEAAKHP--VVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT 628 (1140)
Q Consensus 551 ~i~~~~~~~~~~~~~~--~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~ 628 (1140)
+.+++. --+++..++++... .|+. -+.....+++.+++||+.+|+++|++ |..
T Consensus 507 ----------Std~~d~mDgEL~arvlql~nl-mdsr-~~~~~n~rle~ail~f~eqFRk~Yvg---DQ~---------- 561 (1082)
T KOG1410|consen 507 ----------STDEHDAMDGELSARVLQLVNL-MDSR-LPLKGNERLELAILHFLEQFRKAYVG---DQI---------- 561 (1082)
T ss_pred ----------ccchhhhhhhHHHHHHHHHHHh-hhcc-cchhhhHHHHHHHHHHHHHHHHHHHH---HHH----------
Confidence 112222 12555555554332 1111 11225678999999999999999998 544
Q ss_pred CccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHH
Q 001147 629 GYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELAS 708 (1140)
Q Consensus 629 ~~~~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~ 708 (1140)
+ .+++|+..+.+.+|. ++...+++.++.||.+||++|+..++|++.++ .||..|+.+++..++++++|.++.+++
T Consensus 562 --~-rsSkvY~rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs~GY~~~kkL~kl~~Vqfmln 636 (1082)
T KOG1410|consen 562 --Q-RSSKVYARLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLSLGYSAVKKLVKLDAVQFMLN 636 (1082)
T ss_pred --H-HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHhhhHHHHHHHhcchhhhhHhc
Confidence 3 356799999999997 67789999999999999999999999999999 899999999999999999999999999
Q ss_pred Hhhchhhhhcccc------hhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHH
Q 001147 709 AFANDKTLILLNS------TNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVS 782 (1140)
Q Consensus 709 ~~~~~~~~~~l~~------~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~ 782 (1140)
+|+++++++.-+. ..|++||.++++++. .|..+.+..|+++|.|++..|..+++..+.+ ...+++++..++
T Consensus 637 NHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~~fe~v~~~~~nn-~f~ee~vK~~li 713 (1082)
T KOG1410|consen 637 NHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTDAFEGVLQVFQNN-CFEEEQVKRILI 713 (1082)
T ss_pred ccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHH
Confidence 9999988765443 246789999999875 3455667889999999999999888754322 356688999999
Q ss_pred HHHHHhhhhhhccCCC-cHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccccc----chhhhHHH
Q 001147 783 CLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEV----QETNIVID 856 (1140)
Q Consensus 783 ~ll~~l~Gi~~a~~~~-~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~----~~~~~Lf~ 856 (1140)
|++||+||||.|..++ ++.++|+|+||. +|++...++.|.++|++++|||||++|+++|+.+|+.| ++|+.|||
T Consensus 714 GL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFr 793 (1082)
T KOG1410|consen 714 GLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFR 793 (1082)
T ss_pred HHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEeh
Confidence 9999999999999977 789999999999 99999999999999999999999999999999999988 57899999
Q ss_pred HHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCC-ccchhhhhchhHHHhhhhhccc
Q 001147 857 FCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSS-DSIEAQAINISQVVFFGLHIVT 935 (1140)
Q Consensus 857 ~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~-~~~~d~~~~~~~v~~~~l~~~l 935 (1140)
+.++++..|+.+ ++..++..+...|++|||+|.+++.+|+++++|+|+|||+ ++|||++++.+...|.+|.+.|
T Consensus 794 EtSKmv~~YG~r-----iL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsI 868 (1082)
T KOG1410|consen 794 ETSKMVSIYGNR-----ILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSI 868 (1082)
T ss_pred hhhHHHHHHhhH-----hhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcC
Confidence 999999999754 4555555677899999999999999999999999999999 9999999999999999999999
Q ss_pred cccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCC
Q 001147 936 PLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAG 1015 (1140)
Q Consensus 936 Pli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~ 1015 (1140)
|. .|+++|||+.++||.|++.+++.|+.++.+|+++.|..++.+|..|+++.|+-|+..||.++|++++|++++..++
T Consensus 869 p~--sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tYlfk~itr~ 946 (1082)
T KOG1410|consen 869 PH--SDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTYLFKRITRS 946 (1082)
T ss_pred CH--HHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CccchhhhhccCCCC----CCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 001147 1016 KVGLAAQAAGINNSN----GNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANP 1091 (1140)
Q Consensus 1016 ~~~~~~~~~~~~~~~----~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~ 1091 (1140)
.+......+++++.. .+++|++++++++.++++++|++|.+|| ++|||+++||+.++++|..+..+++++|| +
T Consensus 947 ~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQW--SlSRPlLgLILi~E~~fSdlk~~l~ssQp-~ 1023 (1082)
T KOG1410|consen 947 TKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQW--SLSRPLLGLILINEKYFSDLKASLTSSQP-Y 1023 (1082)
T ss_pred CCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccc--cccchhhHHHhhhHHHHHHHHHHHhcCCC-c
Confidence 443222112222211 2678999999999999999999999998 99999999999999999999999999998 7
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhccc
Q 001147 1092 PFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLR 1138 (1140)
Q Consensus 1092 ~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~l~ 1138 (1140)
++++++..+|.+||.+ ++.|++.||||+|++|+..|+++++..|+
T Consensus 1024 dkqq~l~~cF~~LM~~--ve~nL~~KNrD~FTQNLt~FRrdv~~~lk 1068 (1082)
T KOG1410|consen 1024 DKQQDLDMCFTNLMEG--VERNLTVKNRDRFTQNLTRFRRDVALVLK 1068 (1082)
T ss_pred chhHHHHHHHHHHHHH--HhhcccccchhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999997 56899999999999999999999987665
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.7e-72 Score=614.96 Aligned_cols=919 Identities=13% Similarity=0.147 Sum_probs=659.1
Q ss_pred ChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCC----
Q 001147 4 NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSP---- 79 (1140)
Q Consensus 4 ~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~---- 79 (1140)
+++|||++|++|+..|++|..+.+||++|++|..+|.|+++|.+.|+++|+.+|.+.|.+||+|+++.+++++.+-
T Consensus 30 ~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyvv~~vI~~s~dd~v~~ 109 (1053)
T COG5101 30 KQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLVIEKSQDDKVRD 109 (1053)
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred -hhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccC-ChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHH
Q 001147 80 -EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHE 157 (1140)
Q Consensus 80 -~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~ 157 (1140)
++++.+++..+++.|.|++||. .|++|+.|+++..+.+- -+++.++.+++|++.|++||.. .++..+.|
T Consensus 110 ~qk~~lnkldltLvqIlKqeWP~----nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSae-----qmTq~k~~ 180 (1053)
T COG5101 110 KQKYVLNKLDLTLVQILKQEWPR----NWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAE-----QMTQVKKR 180 (1053)
T ss_pred HHHHHHHHhhhHHHHHHHHhccc----ccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHH-----HHHHHHHH
Confidence 6899999999999999999998 78999999999877521 2566699999999999999987 34455555
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccccccccc
Q 001147 158 QCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETS 237 (1140)
Q Consensus 158 k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~ 237 (1140)
..|.++.-+ +.+||.+|-++|+... ++++++++|+.+..+|.|+|.++
T Consensus 181 ~LkNqm~~E-F~qIF~lc~qiLE~~~-----------~~SLi~ATLesllrfl~wiPl~y-------------------- 228 (1053)
T COG5101 181 LLKNQMKIE-FPQIFGLCKQILEYSR-----------DESLIEATLESLLRFLEWIPLDY-------------------- 228 (1053)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHhhCchhH--------------------
Confidence 577778765 9999999999997653 67899999999999999999997
Q ss_pred CCCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhccc-CccCCCChhhHH
Q 001147 238 SSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG-TVFPSDNGKMQE 316 (1140)
Q Consensus 238 ~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~-~~f~~~~~~~r~ 316 (1140)
|.++++++++...+... |+.+..+++||++++++.+ +.-+...++.-.
T Consensus 229 -------------------IfeTnIieLv~~~f~s~------------pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v 277 (1053)
T COG5101 229 -------------------IFETNIIELVLEHFNSM------------PDTRVATLSCLTEIVDLGRHPQENAEKERILV 277 (1053)
T ss_pred -------------------HHHHHHHHHHHHHhccC------------CchhHHHHHHHHHHHhhccCcccchhhhhHHH
Confidence 77789999988766652 5579999999999999974 222222212122
Q ss_pred HHHHHHHHhhh-hhcCChhHHHHHhhhCC-ChhhH-HHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHHH
Q 001147 317 HHLLQLLSGIL-EWVDPPDVVAQAIESGK-SESEM-LDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVK 393 (1140)
Q Consensus 317 ~yl~~~l~~~~-~~l~~~~~~~~~~~~g~-~~~~~-~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~ 393 (1140)
-+++.++.... ..+...+.+.++++... ++..+ .+++.+|..+...+ .+++++ .+. .+.+....-+
T Consensus 278 ~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~-----~~lLE~----~e~--~e~llnah~Y 346 (1053)
T COG5101 278 IHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVY-----ISLLEA----REM--AENLLNAHGY 346 (1053)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHH-----HHHhcC----hhH--HHHHHHHHHH
Confidence 24444444443 23333345555554332 33333 34444444443322 122222 011 1122222333
Q ss_pred HHhhcccccccchHHHHHHHHHHHHHhhhcc-------cccCCCC------------CCChhhh--hhHHHHHHH-----
Q 001147 394 VLMMNNTEEGTWSWEARDILLDTWTTLLVSL-------DSTGRNV------------VLPLEVR--NAAASLFAL----- 447 (1140)
Q Consensus 394 ~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~-------~~~~~~~------------~~~~~~~--~~~~~i~~~----- 447 (1140)
+..+ +.+++ .|-|+.+|++|+.++.++ |...... ..|.... .....+|..
T Consensus 347 Liqi-SrIne---reiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqL 422 (1053)
T COG5101 347 LIQI-SRINE---REIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQL 422 (1053)
T ss_pred hhhh-hhccH---HHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHH
Confidence 3322 34444 799999999999999865 2111000 0111110 112233332
Q ss_pred --HHhcccccccccccCCCCccch------hhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCC
Q 001147 448 --IVESELKVASASAMDDNGEFNY------LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDP 519 (1140)
Q Consensus 448 --yi~srl~~~~~~~~~e~d~~e~------~~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~ 519 (1140)
-+..+|..|+++.+.++|++|. +.|.++.|+.+.+++.+|+++...++..++...+... ..|..|+
T Consensus 423 rlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq------~dg~EWs 496 (1053)
T COG5101 423 RLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQ------LDGKEWS 496 (1053)
T ss_pred HHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHH------hcCCccc
Confidence 3666899999998888888874 2456899999999999999999999999999888754 4588899
Q ss_pred chhHHHHHHHHH-HHhhHhccCCCCCccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHH
Q 001147 520 TETLEELYSLLL-ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEA 598 (1140)
Q Consensus 520 ~~~~E~L~Wli~-i~g~~l~~~~~ge~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~ 598 (1140)
+..++.|||+|+ |+|++ . ...+...+|.+++.++.+|+-..++.+++. ++++
T Consensus 497 w~nlNtLcWAIGSISGam-s---------------------E~~EkrF~VnviKdLL~LcemKrgKdnKAV-----vASn 549 (1053)
T COG5101 497 WNNLNTLCWAIGSISGAM-S---------------------EVNEKRFFVNVIKDLLALCEMKRGKDNKAV-----VASN 549 (1053)
T ss_pred hhhHhHHHHHHhcccchh-h---------------------hHHHHHHHHHHHHHHHHHHHHhhcCCcchh-----hecc
Confidence 999999999997 66666 1 122445689999999999998888888876 8999
Q ss_pred HHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCCchhHH
Q 001147 599 IVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKDLQ 676 (1140)
Q Consensus 599 ~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~f~~~~~g--~~~l~~~l~~i~~~l~~~~~e~~vi 676 (1140)
+||.+|+|++ || .++ |.++++|+++|+++|++++.| +|+||+|++++.+|-.+|....+=
T Consensus 550 IMyvvGQYpR-FL----kah------------w~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~g- 611 (1053)
T COG5101 550 IMYVVGQYPR-FL----KAH------------WSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEG- 611 (1053)
T ss_pred eeeeeccchH-HH----HHH------------HHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCC-
Confidence 9999999997 88 566 899999999999999999999 899999999999999887222110
Q ss_pred HHHHHHHHHHHhhccccchhhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHH
Q 001147 677 ELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHAT 756 (1140)
Q Consensus 677 ~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~ 756 (1140)
-..|++..++++... .--.|.|.+++++|+|+|.+++..+......+....+|..++
T Consensus 612 ---------------------esEpFI~~Iirnl~k--tT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn 668 (1053)
T COG5101 612 ---------------------ESEPFIVYIIRNLPK--TTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPN 668 (1053)
T ss_pred ---------------------CCCcHHHHHHHhhhh--hcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhH
Confidence 113455666666433 222367888899999999999976655556667888999999
Q ss_pred HHHHHhhCCCc-ccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHH
Q 001147 757 AYLVELSGKND-LKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKF 834 (1140)
Q Consensus 757 ~~~~~l~~~~~-~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l 834 (1140)
..|..+.-+++ ..+...++.+.+-+-+.+......|.+.+.+. +|. ...+..++..|...+..
T Consensus 669 ~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~f--------yPq~~~~y~~ml~ly~avs~~------- 733 (1053)
T COG5101 669 SAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRF--------YPQTCSSYCIMLFLYFAVSFD------- 733 (1053)
T ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhccccc--------chHHHHHHHHHHHHHHHHHHH-------
Confidence 99999875443 22345556666666677777777777776663 333 34444444444433222
Q ss_pred HHHHhhcccc--cccc--chhhhHHHHHHHHHHHhhhcccC--------------ccccccccccccchhhhhhhhHHHH
Q 001147 835 VVDWVDGQIS--YLEV--QETNIVIDFCTRLLQLYSSHNIG--------------KMLMTQSSCLLGEAKTEKYKDLRAL 896 (1140)
Q Consensus 835 ~~e~v~~~~~--~l~~--~~~~~Lf~~~~~ll~~y~~~~~~--------------~~~~~~~~~~~~~~~~e~~k~l~~l 896 (1140)
+++.+.-.+. .-.+ .....+.+++++++.+|.+.... .++.+|....|...+.+.+.....+
T Consensus 734 Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~tti 813 (1053)
T COG5101 734 ISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTI 813 (1053)
T ss_pred HHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 2233322211 1111 13477889999999999854321 0112333333444444444444444
Q ss_pred HHHHHHhhcCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHH
Q 001147 897 FQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFA 976 (1140)
Q Consensus 897 l~lL~~~l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~ 976 (1140)
.+-+.+++... ...++...+.|++-||..|+-+||+++++||.|++.+..+++..+.++|+..|+
T Consensus 814 V~~v~~~i~~~---------------~~l~l~svf~ctl~mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fk 878 (1053)
T COG5101 814 VRNVESVIYLQ---------------RELFLISVFICTLIMIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFK 878 (1053)
T ss_pred HHHHHHHhhhh---------------hHHHHHHHHhhhHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHH
Confidence 44443333222 223344667888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCcc----chhh----------hhc-cCCCCC-CCchhHHHH
Q 001147 977 HVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVG----LAAQ----------AAG-INNSNG-NPEEGVLSR 1040 (1140)
Q Consensus 977 ~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~----~~~~----------~~~-~~~~~~-~~~~~ll~~ 1040 (1140)
.+..+|.|+++|..++|...+++++-.+.+.+.+. |.+. ++.. +.+ ..|.++ ..|.-++..
T Consensus 879 lv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m---g~~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~ 955 (1053)
T COG5101 879 LVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM---GVPFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAF 955 (1053)
T ss_pred HHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHHH
Confidence 99999999999999999999999999888776542 2111 1110 233 445543 445566666
Q ss_pred HHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCCCCCCcChhhHH
Q 001147 1041 FLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQ 1120 (1140)
Q Consensus 1041 ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~af~~L~~~~~~~~~~~~~nr~ 1120 (1140)
+++++-+. .++-|+|.=+-.|.....+|...++.+......++++..+...|+.- ..+-.
T Consensus 956 li~lv~dn------------kisVPlyd~~~~n~~~lseyi~~l~~~sfp~it~e~v~~f~~~l~~~--------~~d~~ 1015 (1053)
T COG5101 956 LIRLVKDN------------KISVPLYDGINPNITILSEYIVGLFVKSFPNITQESVKIFSVGLFEL--------CGDDE 1015 (1053)
T ss_pred HHHHHhcc------------ccccccccCCCCchhhHHHHHHHHHHhhcCcccHHHHHHHHHHHHHH--------hCcHH
Confidence 66666653 34567776677788889999999998873236678888877888762 46788
Q ss_pred HHHHHHHHHHHHchhc
Q 001147 1121 RFRKNLTNFLVEVRGF 1136 (1140)
Q Consensus 1121 ~F~~~l~~F~~~vr~~ 1136 (1140)
-|++++++|+++|+++
T Consensus 1016 ifk~~~~df~vkv~e~ 1031 (1053)
T COG5101 1016 IFKEHVEDFRVKVYEF 1031 (1053)
T ss_pred HHHHHHHHHhhheeee
Confidence 9999999999999876
No 3
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-66 Score=560.45 Aligned_cols=682 Identities=27% Similarity=0.293 Sum_probs=550.2
Q ss_pred chHHHHHHHHHH----HHH-hhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccc--------c-CCCCccch-
Q 001147 405 WSWEARDILLDT----WTT-LLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA--------M-DDNGEFNY- 469 (1140)
Q Consensus 405 ~~~es~~~lL~~----W~~-l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~--------~-~e~d~~e~- 469 (1140)
.+.++++.+|+- |-. ++.+......+ ..-+.++..+|++.|+++++..+.... . +|++.++.
T Consensus 3 ~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~---~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~ 79 (748)
T KOG4541|consen 3 PYASWCDVLLSSSHVGWLTNLYSSVRQKFDL---EGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLT 79 (748)
T ss_pred chHHHHHHHHhcCCcchHHHHHhhHHHHHhh---hhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhc
Confidence 456777888887 887 66542110011 123446788999999999998886411 1 11111111
Q ss_pred -hhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhc-------c---cCCCC-----CchhHHHHHHHHHHH
Q 001147 470 -LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQ-------G---RGMID-----PTETLEELYSLLLIT 533 (1140)
Q Consensus 470 -~~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~-------~---~~~~~-----~~~~~E~L~Wli~i~ 533 (1140)
.+||++-..+++...+..+|...+.+-+.. .+++....+++. . -|+.. ...+.||.|||+++.
T Consensus 80 ~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl 158 (748)
T KOG4541|consen 80 GVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-ALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVL 158 (748)
T ss_pred CCCccCCcchhHHHHHHhcCchHHHHHHHHH-HHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 144444578888888999999888877766 677776555542 1 13322 146779999999999
Q ss_pred hhHhccCCCCCccCChhhHhhhhhh-----------------hh---------cccCchHHHHHHHHHHHHHhhcCc--c
Q 001147 534 GHVLADEGEGEIPVVPNAIQTHFVD-----------------TI---------EAAKHPVVLLCGSIIKFAEWSLDP--E 585 (1140)
Q Consensus 534 g~~l~~~~~ge~~~ip~~i~~~~~~-----------------~~---------~~~~~~~v~li~~ll~l~~~~l~~--~ 585 (1140)
|..++|+..|+.+.+|-.+..|... +. .-+.|++|.+.++++++...+++. +
T Consensus 159 ~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a 238 (748)
T KOG4541|consen 159 MANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSA 238 (748)
T ss_pred HHhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHH
Confidence 9999999999898888777766432 00 113467788888999888766432 1
Q ss_pred cccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc-hhHHHHHHHHHHh
Q 001147 586 ARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVLDIIVRISMT 664 (1140)
Q Consensus 586 ~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~f~~~~~g-~~~l~~~l~~i~~ 664 (1140)
..-..+||++...+.||+.+|.++|....++++ +. ++..-..+|+..+.+ .+++.++++|+..
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y------------~~----~s~~~~tv~p~~te~s~~~~~~ii~kVla 302 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSDHY------------AR----LSQGRGTVDPTETEESVYSLLLIIGKVLA 302 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHHHH------------HH----hcCCCCCCCcccchhhHHHHHHHHHHHHH
Confidence 111348999999999999999998887553433 22 222334456655555 7889999999999
Q ss_pred hccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHHHhhchhh-hhcccchhhHHHHHHHHHHHhcCCCccc
Q 001147 665 TLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKT-LILLNSTNQRSLAQTLVLSAYGMRNSES 743 (1140)
Q Consensus 665 ~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~l~~al~~~~~~~~~~~~ 743 (1140)
++..|++|++++.+++ +.|-+++..+.....++.++.|+.+...+.+... ..-+++..++.+|+++++.+++..|.+.
T Consensus 303 ~lvn~~sE~~L~~Da~-q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~ 381 (748)
T KOG4541|consen 303 DLVNGESETALVPDAL-QSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEE 381 (748)
T ss_pred HHhcccchhhhhHHHH-HHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999 7888999998888889999999999999877433 3335666789999999999999889989
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcC
Q 001147 744 SNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKH 823 (1140)
Q Consensus 744 ~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~ 823 (1140)
..++|...++|+..||-..++++ ++.+++.+|+.-|+.+.|++.|.+..+...+|++++....-|.+++..|.+
T Consensus 382 ~~n~~~~~LqpL~~Rf~~~~nq~------~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~fL~~~~~~c~glm~s~~~ 455 (748)
T KOG4541|consen 382 ECNLGSNKLQPLPSRFFTYFNQH------NQGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQFLVLSAYGCRGLMASNQY 455 (748)
T ss_pred HHHHHHhhccccHHHHHHHhccc------chhhHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 99999999999999999988776 346788889999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccc-chhhhHHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHH
Q 001147 824 ESAVVYLLLKFVVDWVDGQISYLEV-QETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSN 902 (1140)
Q Consensus 824 ~~~v~~~iL~l~~e~v~~~~~~l~~-~~~~~Lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~ 902 (1140)
.+++|..|+..+.++..+...|+.. ..++.+|..|+++++.|...+.+|...+ ..+|+|+|.++..++++|+|
T Consensus 456 ~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~~~~~~r~rt~------~a~~Ee~~sdl~lvl~lL~n 529 (748)
T KOG4541|consen 456 VKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYGAASATRPRTQ------RAIYEEGLSDLNLVLRLLEN 529 (748)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhhhhcccCcchH------HHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999986 4589999999999999999988887653 47899999999999999999
Q ss_pred hhcCCCcccCCccchhhhh-chhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHH
Q 001147 903 LCSKDLVDFSSDSIEAQAI-NISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGT 981 (1140)
Q Consensus 903 ~l~~~~~nfg~~~~~d~~~-~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~s 981 (1140)
.+++||.+||.+ +... .+++||.+|+++++|+|+.++++|||+|..||+++.|+|+..|++++++|.+.++.+++|
T Consensus 530 ~lskdF~~~s~e---~~~~~G~a~VV~~gl~~ilplm~~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc 606 (748)
T KOG4541|consen 530 YLSKDFSSDSIE---TQSTNGIAQVVYFGLHIILPLMTLELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQC 606 (748)
T ss_pred Hhhhhhhccccc---cccccCcceEEEeeHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHh
Confidence 999999999861 1111 348999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHH-HHHHHHHHHHhccCCCchHH
Q 001147 982 LDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSR-FLRSLLQLLLFEDYSPDMVG 1060 (1140)
Q Consensus 982 l~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-ll~~l~~~~l~~~~~~~~~~ 1060 (1140)
+..||+. ++...+|+..-+-+.++....++|.. ...+.++.+ |++.+|++++++++++++..
T Consensus 607 ~~LGMTg---e~~s~~l~~~~e~v~hfgspankgrc--------------TqnlafL~~efL~tvf~~ll~~~~~t~l~s 669 (748)
T KOG4541|consen 607 SGLGMTG---ESHSAGLHTDPEGVFHFGSPANKGRC--------------TQNLAFLSREFLRTVFHFLLFEDYSTDLVS 669 (748)
T ss_pred hccCCcc---ccchHhhccChHhhhccccccccccc--------------cccHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 9999993 44445555554555555444443321 112344544 99999999999999999999
Q ss_pred HhhhhHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhccccC
Q 001147 1061 TAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM 1140 (1140)
Q Consensus 1061 ~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~l~~~ 1140 (1140)
.+++++|+||+|+|..|++++++|+++|.||..++++.+||+.|+.+++ .++++|++|-+|++++..|+++|.|+|+++
T Consensus 670 ~a~~Aly~LI~~e~~~y~elvneL~skq~np~~~qrLa~Af~~Lt~sn~-~psldR~~~~~Frk~le~Fl~~V~Gllc~n 748 (748)
T KOG4541|consen 670 TAADALYPLILCEPNLYQELVNELISKQANPNFKQRLANAFQVLTTSNQ-LPSLDRLNYQRFRKNLENFLVEVLGLLCLN 748 (748)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHhhcccccC
Confidence 9999999999999999999999999999999999999999999999875 345999999999999999999999999875
No 4
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-44 Score=437.41 Aligned_cols=811 Identities=15% Similarity=0.143 Sum_probs=561.4
Q ss_pred CChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCC---
Q 001147 3 VNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSP--- 79 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~--- 79 (1140)
++|.+|++++.+|+..++.|..|..||+.|+++.++|||++.|+..+..+|+.+|.++|.++|+|++..+....+..
T Consensus 27 ~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~ 106 (1041)
T KOG2020|consen 27 EERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKNYVLTLIIEASPDEDVS 106 (1041)
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHHHHHHHHhhcCCcHhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998877654
Q ss_pred --hhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCC-hhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHH
Q 001147 80 --EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSEFSPSTSSAMGLPREFH 156 (1140)
Q Consensus 80 --~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h 156 (1140)
.+++++|++.+++.|+||.|+. .|++|+.++.+......+ .+..+..+++|++.|++|++. .+.+.. +
T Consensus 107 ~~~~~~~~kL~~i~Vqi~K~eWp~----~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~---~~~q~~--~ 177 (1041)
T KOG2020|consen 107 ETEKHLLNKLNLILVQIVKREWPA----IWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSS---ELTQQK--I 177 (1041)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh----hcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccch---HHHhhh--H
Confidence 6899999999999999999999 789999999999875333 467789999999999999987 223333 4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccc
Q 001147 157 EQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTET 236 (1140)
Q Consensus 157 ~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~ 236 (1140)
.-.+...+. .+..||++|..+..+.. .. ++.++|..+..+++|++.++
T Consensus 178 ~il~~~~~~-~f~~i~~l~~~~~~~a~-----------~~-~~~atl~tl~~fl~wip~~~------------------- 225 (1041)
T KOG2020|consen 178 IILKNLLEN-EFQQIFTLCSYIKEKAN-----------SE-LLSATLETLLRFLEWIPLGY------------------- 225 (1041)
T ss_pred HHHHHHhhH-HHHHHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHhhcccHHH-------------------
Confidence 335555555 58999999988665443 44 99999999999999999998
Q ss_pred cCCCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHH
Q 001147 237 SSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQE 316 (1140)
Q Consensus 237 ~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~ 316 (1140)
+.+.+.+..+...+.. .+.++..|++||+++++..+..+.... .
T Consensus 226 --------------------I~~tn~l~~~l~~~ln------------~~~~r~~al~CL~ei~s~~~~~~~~~~----~ 269 (1041)
T KOG2020|consen 226 --------------------IFETNILELLLNKFLN------------APELRNNALSCLTELLSRKRSIYERKT----V 269 (1041)
T ss_pred --------------------HHHhhhHHHHHHhccc------------hHHHHHHHHHHHHHHHhccccchhHHh----H
Confidence 4455566666654432 367899999999999998877443322 3
Q ss_pred HHHHHHHHhhhhhcCChhHHHHHhhhCCChhh--HH-HHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHHH
Q 001147 317 HHLLQLLSGILEWVDPPDVVAQAIESGKSESE--ML-DGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVK 393 (1140)
Q Consensus 317 ~yl~~~l~~~~~~l~~~~~~~~~~~~g~~~~~--~~-e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~ 393 (1140)
.++...+..+. .+.......+++..|...+. +. .+|..+..+...|. .++++ .......+-..+..++.
T Consensus 270 ~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~~-----~lle~--~~~~~~~~~~~~~~li~ 341 (1041)
T KOG2020|consen 270 PMFNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQHI-----ALLES--SLSQRPVLLEALLELIL 341 (1041)
T ss_pred HHHHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHHH-----HHHcC--chhhhhHHHHHHHHHHH
Confidence 45555555543 22222223344444443332 22 34555555543331 22222 00001111111233333
Q ss_pred HHhhcccccccchHHHHHHHHHHHHHhhhccccc-----CCCCCCChhh----hhhHHHHHHHH-------Hhccccccc
Q 001147 394 VLMMNNTEEGTWSWEARDILLDTWTTLLVSLDST-----GRNVVLPLEV----RNAAASLFALI-------VESELKVAS 457 (1140)
Q Consensus 394 ~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~-----~~~~~~~~~~----~~~~~~i~~~y-------i~srl~~~~ 457 (1140)
.. ..+. .+.++.|+++|..++.+..|. ....+.|... .+...++|+.| ...+|.+|+
T Consensus 342 i~----~~~~---se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe 414 (1041)
T KOG2020|consen 342 IS----TIEP---SEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPE 414 (1041)
T ss_pred Hh----ccCc---hhHHHHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHHHHHHHHHHHHHHHHHhcCch
Confidence 32 2333 789999999999999886653 1111111100 01225666655 667899999
Q ss_pred ccccCCCCccch--h----hccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHH
Q 001147 458 ASAMDDNGEFNY--L----QASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLL 531 (1140)
Q Consensus 458 ~~~~~e~d~~e~--~----~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~ 531 (1140)
++...+++.++. + .+-...|...++..++++.++..++...++..+.... .|..|.....+.+||.++
T Consensus 415 ~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l------~~~~~~~~~ln~l~~ai~ 488 (1041)
T KOG2020|consen 415 EVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQL------DGDEWSLHNLNRLCWAIG 488 (1041)
T ss_pred heeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHh------hHHHHhhhhhhhHHHHHH
Confidence 887666665553 1 2235688999999999999999999998888865442 245556677889999997
Q ss_pred -HHhhHhccCCCCCccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhh
Q 001147 532 -ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTY 610 (1140)
Q Consensus 532 -i~g~~l~~~~~ge~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~Y 610 (1140)
++|+++. ....+.++.++..++++|+...++.+++. ++.++++.++++++ |
T Consensus 489 sisg~~~e----------------------~~e~k~~~~v~~d~l~l~E~~~~kdn~av-----i~~Ni~~vv~q~p~-F 540 (1041)
T KOG2020|consen 489 SISGRMLE----------------------DMEKKFFVAVIRDLLNLCERKRGKDNKAV-----IASNIMYVVGQYPR-F 540 (1041)
T ss_pred HHHhhhHH----------------------HHHHHHHHHHHHHHHHHHHHhhcCCchhH-----HHHHHHHHhcccch-H
Confidence 7776641 11335577889999999998776666665 78889999999986 7
Q ss_pred cCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHh
Q 001147 611 LMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV 688 (1140)
Q Consensus 611 L~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~f~~~~~g--~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~ 688 (1140)
+ +.+ |.++++++..+++++++.+.| +|.||+|++++.+|+.+|.-...
T Consensus 541 l----~~h------------~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~-------------- 590 (1041)
T KOG2020|consen 541 L----KAH------------WKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQL-------------- 590 (1041)
T ss_pred H----HHH------------HHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecc--------------
Confidence 7 555 788888999999999999997 79999999999999998711111
Q ss_pred hccccchhhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCC-c
Q 001147 689 RRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKN-D 767 (1140)
Q Consensus 689 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~-~ 767 (1140)
....|.|..+..+.+. ..-.+.+.+++.+|.++++++....++..++++....|.-....|..++.++ .
T Consensus 591 --------~e~~~fv~~~~~~l~~--i~~~l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~ 660 (1041)
T KOG2020|consen 591 --------GETKPFVGELLLNLTA--ITEDLQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARC 660 (1041)
T ss_pred --------cccccchHHHhhcccc--hhcCchHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcc
Confidence 0113455555555332 1122456678889999998887777888888888888888888888866443 3
Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccc
Q 001147 768 LKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYL 846 (1140)
Q Consensus 768 ~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l 846 (1140)
...+..+.+.+..+.+++..+..++.+.++.+. +. -.++.+.+.+|..++..+. ..+.+.+..-
T Consensus 661 ~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~--------~~~~~~~~d~~~l~~~~s~~v~-------~~~~~~~~~~ 725 (1041)
T KOG2020|consen 661 NDEILKLLETVKSLLNILKTNSRALTSLGSTFV--------PQLGKIYLDMLQLYIKQSELVS-------INVTAGGSEK 725 (1041)
T ss_pred cHHhhcchHHHHHHHHHHHhHHHHHHhcCcccc--------cccccccHHHHHHHHHhccccc-------HHHhcccccc
Confidence 334556677776777777777777777665422 22 3455566666666665433 3333333222
Q ss_pred cc-c---hhhhHHHHHHHHHHHhhhcccCccc--------------cccccccccchhhhhhhhHHHHHHHHHHhhcCCC
Q 001147 847 EV-Q---ETNIVIDFCTRLLQLYSSHNIGKML--------------MTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDL 908 (1140)
Q Consensus 847 ~~-~---~~~~Lf~~~~~ll~~y~~~~~~~~~--------------~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~ 908 (1140)
+. + .-..+.+++..++.+|.....++-. .+|..-.|...+.+.. -+...+++.+.+-.
T Consensus 726 t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~~~vl----~l~~~iv~~Lg~~i 801 (1041)
T KOG2020|consen 726 TKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLDNVPDYRENEVL----SLNATIVPKLGEFI 801 (1041)
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHccCcchhcchHH----HhhhhhhhhhhhHh
Confidence 22 1 1366778888888888654322110 1111111212222211 11222222111111
Q ss_pred cccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccC
Q 001147 909 VDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHH 988 (1140)
Q Consensus 909 ~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~ 988 (1140)
...+ . .+.-..+.|.+-|++.|+.+||+++..||.+++.++..++..+.++|++.++.++.++.|.+.|
T Consensus 802 ~~~~--------~---~i~~~v~~c~l~m~~~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h 870 (1041)
T KOG2020|consen 802 PAEL--------P---LINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHH 870 (1041)
T ss_pred hhhc--------c---HHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHh
Confidence 1111 0 1122455677889999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 001147 989 QDSEIVDMCLRALRALASYHY 1009 (1140)
Q Consensus 989 ~d~~I~~~~l~~l~~l~~~~~ 1009 (1140)
..++|++.++..+..+...+.
T Consensus 871 ~~r~i~~~~l~~l~~l~k~~~ 891 (1041)
T KOG2020|consen 871 TMRNIAENGLNILLELLKNLA 891 (1041)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 999999999988877776554
No 5
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5e-25 Score=255.17 Aligned_cols=906 Identities=15% Similarity=0.102 Sum_probs=523.9
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChh
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEG 81 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~ 81 (1140)
|++.+.++++|++.+++++.|...+.+|+..+++.+|||+|.+|+..|.++|...+++++.+|+.-++.-+...+ +.|+
T Consensus 22 ~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL~~klf~~l~~~~-g~~~ 100 (982)
T KOG2022|consen 22 HENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQLKLKLFLILSRFA-GGPK 100 (982)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhc-CCch
Confidence 466788999999999999999999999999999999999999999999999999999999999999999887765 5799
Q ss_pred HHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCCh-----hhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHH
Q 001147 82 YVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-----DTQFIGINFLESLVSEFSPSTSSAMGLPREFH 156 (1140)
Q Consensus 82 ~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h 156 (1140)
.|.+|++..+|.++=.-=+| .|+..+.++++.+..+.+| -+|.+-++.|+.+..||... .++..+.
T Consensus 101 lVl~kl~~sLasl~l~~~~d----~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q~~-----~l~~t~~ 171 (982)
T KOG2022|consen 101 LVLNKLCASLASLILYMVPD----LWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQHV-----TLPLTRR 171 (982)
T ss_pred hHHHHHHHHHHHHHHHHccc----cCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhhhc-----cchhHHH
Confidence 99999999998887444444 7888999999998865444 36677778888777787665 4444433
Q ss_pred HHHH--HHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccccc-ccCCCCCcccccccccccc
Q 001147 157 EQCR--ISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDF-QFDTSGRKISINVFSAGVR 233 (1140)
Q Consensus 157 ~k~~--~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f-~~~~~~~~~~~~~~~~~~~ 233 (1140)
-..+ .+++.+ ....+++....+.-.+..+....-.-..+++|.. .|+- .+.....+
T Consensus 172 ~~l~~eLak~~~-------~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~---~Wi~~i~~~~~~c----------- 230 (982)
T KOG2022|consen 172 SVLRGELAKFSE-------NVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVE---QWIRYISLTGMDC----------- 230 (982)
T ss_pred HHHHHHHHHHHH-------HHhHHHHHHHhccccccHHHHHHHhhhHHHHHHH---HHHHHhccccccH-----------
Confidence 3333 222222 1222333333322111111122223357888887 5664 22211111
Q ss_pred ccccCCCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCCh-
Q 001147 234 TETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNG- 312 (1140)
Q Consensus 234 ~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~- 312 (1140)
..+...+++.....-.. --+.+=+|++- .++++.++.-
T Consensus 231 --------------------------~~i~~~ll~~l~~s~~~-----------~~~a~~~cmt~----~~n~la~~~l~ 269 (982)
T KOG2022|consen 231 --------------------------DQITQVLLDVLGQSTEG-----------SYEAAEKCMTI----FGNVLADDTLL 269 (982)
T ss_pred --------------------------HHHHHHHHHHHhhhccc-----------cccchhhhccc----chhhhccchHH
Confidence 11223333222210000 01111122211 1111111110
Q ss_pred --------hhHHHHHHHHHHhh---hhhcCChhHHHHHhhhCCC--hhhHHHHHHHHHHHHhccChhhHHhhhhccCcch
Q 001147 313 --------KMQEHHLLQLLSGI---LEWVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFG 379 (1140)
Q Consensus 313 --------~~r~~yl~~~l~~~---~~~l~~~~~~~~~~~~g~~--~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~ 379 (1140)
..-..|.+++..-+ ..+++....-.+. ..+.+ ++++++||++....+.||.+..+...- .|
T Consensus 270 ~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~-~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~-----~g 343 (982)
T KOG2022|consen 270 ASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQE-EENADASEEEIVTFLAITVSSVENHLPTLIDCAA-----QG 343 (982)
T ss_pred HHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHh-----hc
Confidence 00112322221111 1112111111122 22333 689999999999999998644433221 01
Q ss_pred hHHHHHHHHHHHHHHH--hhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhccccccc
Q 001147 380 TLTLLSNLMCEVVKVL--MMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVAS 457 (1140)
Q Consensus 380 ~l~~l~~l~~~~~~~~--~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~ 457 (1140)
+. +.+....++.. ++..+.......-.....|+||..|.+++..... .+.++.-..+..+||...++--+.|..
T Consensus 344 ~~---~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~-e~~~~~~~i~~~qIy~qlvei~l~K~~ 419 (982)
T KOG2022|consen 344 EQ---SELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTIN-ETQQIKKQILSQQIYAQLVEILLKKLA 419 (982)
T ss_pred ch---HHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhh-ccCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 11 12222333322 2345555555555667799999999998754332 223333334556788777665555443
Q ss_pred ccccCCCCccchhhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH-----HHHhcccC-CCCCchhHHHHHHHHH
Q 001147 458 ASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERF-----ARLHQGRG-MIDPTETLEELYSLLL 531 (1140)
Q Consensus 458 ~~~~~e~d~~e~~~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~-----~~l~~~~~-~~~~~~~~E~L~Wli~ 531 (1140)
.-. ++.-.+=+.|+ +|+.+ ..|.+.+|+....+.++.+.. +.+.+.-+ +...+..|++...+++
T Consensus 420 ~Ps--~e~~~~W~S~s----~e~F~----~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~ 489 (982)
T KOG2022|consen 420 LPS--KEIWLSWSSDS----REQFE----SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIF 489 (982)
T ss_pred CCC--HHHhccCCcch----HHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 210 11001111223 44555 556666666666666655422 22222222 2223457777777887
Q ss_pred HHhhHhccCCCCCccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhc
Q 001147 532 ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYL 611 (1140)
Q Consensus 532 i~g~~l~~~~~ge~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL 611 (1140)
..-.+..+.++.|.+.+| .+++.+- ..+.+...|++.++.+..++.++. |+
T Consensus 490 ~~~sva~~~~~t~~~~i~-----------------------rl~~~~a-----sik~S~~n~ql~~Tss~~igs~s~-~l 540 (982)
T KOG2022|consen 490 QFQSVAEYLGETESTWIP-----------------------RLFETSA-----SIKLSAPNPQLLSTSSDLIGSLSN-WL 540 (982)
T ss_pred HHHHHHhhcCcchhHHHH-----------------------HHHHhcc-----ccccccCChhHHHHHHHHHHHHHH-HH
Confidence 777764444433433333 2333221 122223579999999999999985 88
Q ss_pred CccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhcc
Q 001147 612 MPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRK 691 (1140)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~ 691 (1140)
. ++.. ++-.+.+.|++.+|........+..+=+.|..|-.+.....+-+..+|.++++
T Consensus 541 ~---e~P~-------------~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~------ 598 (982)
T KOG2022|consen 541 G---EHPM-------------YLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLN------ 598 (982)
T ss_pred h---cCCc-------------ccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc------
Confidence 7 4341 11134677888887543333333333333334433221112212222211111
Q ss_pred ccchhhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCccccc
Q 001147 692 NVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNV 771 (1140)
Q Consensus 692 ~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~ 771 (1140)
.....++.+.++|+++|++.+... +++...|+.+++.|+-.+++-.+... ..
T Consensus 599 ------------------------~~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il~qle~~l~~~-i~-- 650 (982)
T KOG2022|consen 599 ------------------------KSNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPILSQLEINLAPG-ID-- 650 (982)
T ss_pred ------------------------ccccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHHHHHHHhhcCC-CC--
Confidence 011234557889999999998655 78899999999999999887775432 11
Q ss_pred ccchhHHHHHHHHHHHhhhhhhccCCC---------cH-------HHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHH
Q 001147 772 SQQPDIILLVSCLLERLRGAANATEPR---------TQ-------KAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFV 835 (1140)
Q Consensus 772 ~~~~~ii~~i~~ll~~l~Gi~~a~~~~---------~~-------~~l~~~l~~~~~~~~~ll~~y~~~~~v~~~iL~l~ 835 (1140)
+++-...+...+-+...+..+.... .. .++.+++...++++.++++.|-++.+|+..++.-+
T Consensus 651 --~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~ 728 (982)
T KOG2022|consen 651 --DQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIM 728 (982)
T ss_pred --CHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 1111112222222222222221100 00 16778888899999999999999999999999998
Q ss_pred HHHhhccccccccchhhhHHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccC-Cc
Q 001147 836 VDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFS-SD 914 (1140)
Q Consensus 836 ~e~v~~~~~~l~~~~~~~Lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg-~~ 914 (1140)
..-+.+....+..+..-.++..+.+ |...+ ... .+.+...++.-.+..-+ .+
T Consensus 729 ~~~v~~~~~sF~~p~l~~l~~Fi~r----~~~~~-------------~a~----------tl~l~~~~l~~~~~~~~~~~ 781 (982)
T KOG2022|consen 729 VKGVRSLLTSFPEPMLPSLCPFIVR----FLTSC-------------LAV----------TLSLIAACLLAKSTVEQCKP 781 (982)
T ss_pred HhccccccccchhhhHHHHHHHHHH----hccch-------------HHH----------HHHHHHHHHHhhhccccccc
Confidence 8876665544323344455555554 21110 001 11111111111111000 01
Q ss_pred cchhhhhchhHHHhhhhhccccccc-cccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHH-HHHhhccCCchH
Q 001147 915 SIEAQAINISQVVFFGLHIVTPLMS-GDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLG-TLDFGLHHQDSE 992 (1140)
Q Consensus 915 ~~~d~~~~~~~v~~~~l~~~lPli~-~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~-sl~~Gl~~~d~~ 992 (1140)
.-+-... ..+..++-+.. .-+...||+...||.++..+.+.+|..+.... ..|+.++. +...+|+..++.
T Consensus 782 lv~~~~~-------~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~-~~~ts~i~~~a~~ll~~pE~~ 853 (982)
T KOG2022|consen 782 LVGQDMA-------NAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM-LAFTSLILICAFILLNSPEPT 853 (982)
T ss_pred cHHHHHH-------HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch-HHHHHHHHHHHHHhcCCCccH
Confidence 1110000 11111111111 22567799999999999999999999875332 34777777 889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhc
Q 001147 993 IVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILC 1072 (1140)
Q Consensus 993 I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~ 1072 (1140)
.++.+++++..++++.+++... .....| .++=..++..+|.. +++...+..++.+++.|+++..-
T Consensus 854 ~i~aa~qF~t~~~~~~~s~~~~---tv~~~V-----------~~~G~~Li~~im~~-vgg~~~RS~ld~~aDIL~al~~k 918 (982)
T KOG2022|consen 854 TIRAASQFLTALATYATSHDLV---TVTSVV-----------AEIGPILIYAIMRG-VGGEASRSTLDALADILLALNAK 918 (982)
T ss_pred HHHHHHHHHHHHHhhcccchhH---HHHHHH-----------HhcchHHHHHHHHH-hcCcCccchhHHHHHHHHHHHHh
Confidence 9999999999999887543210 000001 12223457777776 67777666679999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhcc
Q 001147 1073 EPRLYQRLGSELIERQANP--PFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFL 1137 (1140)
Q Consensus 1073 ~~~~f~~~~~~li~~q~~~--~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~l 1137 (1140)
++..-..|+.+.++....| ......+..|.+.+- .+|.|++.|++.+..|-.+.||+-
T Consensus 919 ~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~ll-------rer~n~R~~k~~il~~~L~~~~l~ 978 (982)
T KOG2022|consen 919 FFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLL-------RERGNKRNFKQQILEFNLACTGLP 978 (982)
T ss_pred hhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHH-------HHHhcHHHHHHHHHHHHHHhcCCC
Confidence 9988999999998543223 445777888866654 368899999999999999999874
No 6
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1e-15 Score=174.98 Aligned_cols=245 Identities=11% Similarity=0.061 Sum_probs=201.5
Q ss_pred CChHHHHHHHHhhccCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhc-----C
Q 001147 3 VNPAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQH-----A 76 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~-----~ 76 (1140)
..|+||-+++.+.|.+|++|+.|-.+|.++ +++.++|||+++|.+.+...++.....+..-+|.-+..|+... .
T Consensus 20 a~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~qvl~ne~ 99 (980)
T KOG2021|consen 20 ATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQVLGNEQ 99 (980)
T ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 458999999999999999999999999877 8899999999999999988888899999999999999998641 1
Q ss_pred CCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChh--hHHHHHHHHHHHHhhhCCCCCCCCCCcHH
Q 001147 77 SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVD--TQFIGINFLESLVSEFSPSTSSAMGLPRE 154 (1140)
Q Consensus 77 ~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gl~lL~~lv~efs~~~ss~~~~~~~ 154 (1140)
...|.|++||+.++++.+.-..+++ .|.+||.++...+.. ++. ....-|++|.++-+|.... ++-.+.+
T Consensus 100 ~~~p~fi~Nk~aqvlttLf~~eYp~----~WnsfF~dlmsv~~~--~s~~~~~dfflkvllaIdsEiad~---dv~rT~e 170 (980)
T KOG2021|consen 100 TKLPDFIMNKIAQVLTTLFMLEYPD----CWNSFFDDLMSVFQV--DSAISGLDFFLKVLLAIDSEIADQ---DVIRTKE 170 (980)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhc--ccchhhHHHHHHHHHHhhhHhhhc---cccCChH
Confidence 2469999999999999999888877 799999999988864 443 3678899999999999776 4555555
Q ss_pred HHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccc
Q 001147 155 FHE---QCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAG 231 (1140)
Q Consensus 155 ~h~---k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~ 231 (1140)
..+ ..|..+|+++.++|-+.+.+++..... .-++.+...+|+|..++.||+-++-
T Consensus 171 ei~knnliKDaMR~ndip~lv~~wyqil~~y~n--------~~npgl~~~cLdc~g~fVSWIdInL-------------- 228 (980)
T KOG2021|consen 171 EILKNNLIKDAMRDNDIPKLVNVWYQILKLYEN--------IVNPGLINSCLDCIGSFVSWIDINL-------------- 228 (980)
T ss_pred HHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHhhhhhhhh--------------
Confidence 444 467899999999999999999876542 1156789999999999999998875
Q ss_pred ccccccCCCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCC
Q 001147 232 VRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDN 311 (1140)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~ 311 (1140)
+.+...+.+++.+... .+++..|-.|+.++.|-+.+ +
T Consensus 229 -------------------------IaNd~f~nLLy~fl~i-------------eelR~aac~cilaiVsKkMk---P-- 265 (980)
T KOG2021|consen 229 -------------------------IANDYFLNLLYKFLNI-------------EELRIAACNCILAIVSKKMK---P-- 265 (980)
T ss_pred -------------------------hhchhHHHHHHHHHhH-------------HHHHHHHHHHHHHHHhcCCC---h--
Confidence 5567789999877664 46899999999999986532 1
Q ss_pred hhhHHHHHHHH
Q 001147 312 GKMQEHHLLQL 322 (1140)
Q Consensus 312 ~~~r~~yl~~~ 322 (1140)
..+...+..+
T Consensus 266 -~dKL~lln~L 275 (980)
T KOG2021|consen 266 -MDKLALLNML 275 (980)
T ss_pred -hHHHHHHHHH
Confidence 1245555554
No 7
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.85 E-value=3.5e-20 Score=207.69 Aligned_cols=280 Identities=16% Similarity=0.223 Sum_probs=201.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccccc-c---hhhhHHHHHHHHHHHhhhcccCc--------------
Q 001147 811 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEV-Q---ETNIVIDFCTRLLQLYSSHNIGK-------------- 872 (1140)
Q Consensus 811 ~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~-~---~~~~Lf~~~~~ll~~y~~~~~~~-------------- 872 (1140)
..++.+++++|..+++.+. +.+...+..... + ..+.+.+++++++++|.+.....
T Consensus 3 ~~i~~d~l~lY~~~s~~i~-------~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~ 75 (319)
T PF08767_consen 3 GRIYLDMLNLYRAYSQIIS-------QAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDA 75 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4678899999999888755 555555544433 2 24788999999999999865411
Q ss_pred cccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHH
Q 001147 873 MLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDY 952 (1140)
Q Consensus 873 ~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~f 952 (1140)
...+|+++.+..+++|.+..+..+++-+.+.+.+.. . .+.-..+++++|||++|+.+||++|.+|
T Consensus 76 vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v------------~---~I~~~vf~~Tl~MI~~d~~~yPe~r~~f 140 (319)
T PF08767_consen 76 VLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQV------------P---QILEAVFECTLPMINKDFEEYPEHRVNF 140 (319)
T ss_dssp HHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCH------------H---HHHHHHHHHHHHHHSSTSSSSHHHHHHH
T ss_pred HHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhH------------H---HHHHHHHHHHHHHHHhhhhhChHHHHHH
Confidence 135688788889999999988888888777665443 2 3333666999999999999999999999
Q ss_pred HHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHh-hhcCCCccchhhhhccCCCCC
Q 001147 953 FSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYK-ETGAGKVGLAAQAAGINNSNG 1031 (1140)
Q Consensus 953 f~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1031 (1140)
|+|++.+++.||..+.++|++.|..+++++.||++|.+++|++.||+++..+++.+.+ +......+
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F------------- 207 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQF------------- 207 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHH-------------
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999987 11111111
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHH----------------hcCHHHHHHHHHHHHHhCCCchhHH
Q 001147 1032 NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLI----------------LCEPRLYQRLGSELIERQANPPFKS 1095 (1140)
Q Consensus 1032 ~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li----------------~~~~~~f~~~~~~li~~q~~~~~~~ 1095 (1140)
..+.+..++..+|.. +..+....-...-+..|..|+ ..|.++..+++.+++++..+....+
T Consensus 208 --~~~y~~~il~~if~v-ltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~ 284 (319)
T PF08767_consen 208 --YQQYYLDILQDIFSV-LTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPK 284 (319)
T ss_dssp --HHHHHHHHHHHHHHH-HHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HH
T ss_pred --HHHHHHHHHHHHHHH-HHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHH
Confidence 123333444444443 222222222233344444444 2456778889988888763136677
Q ss_pred HHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhc
Q 001147 1096 RLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGF 1136 (1140)
Q Consensus 1096 ~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~ 1136 (1140)
++......|.+. ..+..+|+.+++||++++|+|
T Consensus 285 qi~~fv~~Lf~~--------~~d~~~Fk~~lrDFlI~~kef 317 (319)
T PF08767_consen 285 QIENFVQGLFEL--------NNDPEKFKTHLRDFLIQLKEF 317 (319)
T ss_dssp HHHHHHHHHHHT--------TT-HHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHhhhhhhc
Confidence 888888999873 458999999999999999987
No 8
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=9.6e-15 Score=161.53 Aligned_cols=514 Identities=55% Similarity=0.828 Sum_probs=318.8
Q ss_pred cCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhccc-CccCCCChhhHHHHHHHHHHhh
Q 001147 248 QPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG-TVFPSDNGKMQEHHLLQLLSGI 326 (1140)
Q Consensus 248 ~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~-~~f~~~~~~~r~~yl~~~l~~~ 326 (1140)
+|..+|-+.+++...+.|+-++|...++....++.+.|+++.........++|++.| -+|+......|.+.....++|.
T Consensus 2 ~~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~~ 81 (748)
T KOG4541|consen 2 KPYASWCDVLLSSSHVGWLTNLYSSVRQKFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTGV 81 (748)
T ss_pred cchHHHHHHHHhcCCcchHHHHHhhHHHHHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcCC
Confidence 577899999999988888888888877766555566677766666666689999999 5788876666777777777776
Q ss_pred hhhcCC-hhHHHHHhhhCCChhhHHHHHHHHHHHHh-ccChhhHHhhhhccCcchhHHHHHHHHH------HHHHHHhh-
Q 001147 327 LEWVDP-PDVVAQAIESGKSESEMLDGCRALLSIAT-VTTPFVFDRLLKSIRPFGTLTLLSNLMC------EVVKVLMM- 397 (1140)
Q Consensus 327 ~~~l~~-~~~~~~~~~~g~~~~~~~e~c~~l~~l~~-~~~~~~l~~~~~~~~~~~~l~~l~~l~~------~~~~~~~~- 397 (1140)
-...++ +..+.-....|....++-.-|+.+....+ +... .+...+.+...+|-...++.+.. +|+-...+
T Consensus 82 edd~D~s~D~~~~~~~~gr~gae~c~~~~~lle~~~t~lh~-~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~ 160 (748)
T KOG4541|consen 82 EDDIDPSPDVISKEIEEGRSGAEMCDGCRALLEIGTTTLHV-VFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMA 160 (748)
T ss_pred CccCCcchhHHHHHHhcCchHHHHHHHHHHHHHhcccccHH-HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666654 33333222333333445555665543332 2111 22223333334443333333222 34433333
Q ss_pred cccccccchHHHHHHHHHHHHHhhhc-ccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCCccchhhccHHH
Q 001147 398 NNTEEGTWSWEARDILLDTWTTLLVS-LDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISA 476 (1140)
Q Consensus 398 ~~~~~~~~~~es~~~lL~~W~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d~~e~~~~d~~~ 476 (1140)
....++.|..++.+..++-|..+-.+ ++..++.+-.|++.++.+..+++--+++-+.-+...+.-+++.+| .+....
T Consensus 161 ~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e--~~~v~a 238 (748)
T KOG4541|consen 161 NSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADE--LASVSA 238 (748)
T ss_pred hccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHH--HHHHHH
Confidence 24566778889999999999988776 333322222334333334444433334433322222222223222 222222
Q ss_pred HHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHH-HHHhhHhccCC--CCCccCChhh
Q 001147 477 MDERLSSYALIARAA--IDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLL-LITGHVLADEG--EGEIPVVPNA 551 (1140)
Q Consensus 477 ~~~ql~~i~~l~R~~--~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli-~i~g~~l~~~~--~ge~~~ip~~ 551 (1140)
..+.|-.-+.+.|+. ...+.+.+...+...++++.+..+..++.+.-+. .|++ +++|++|++-. +||+.+.|+.
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y~~~s~~~~tv~p~~te~s-~~~~~~ii~kVla~lvn~~sE~~L~~Da 317 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSDHYARLSQGRGTVDPTETEES-VYSLLLIIGKVLADLVNGESETALVPDA 317 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCCCCCcccchhh-HHHHHHHHHHHHHHHhcccchhhhhHHH
Confidence 233333333333322 3555666677777787777776666666555555 4555 69999999884 5699999999
Q ss_pred HhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCcc
Q 001147 552 IQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQ 631 (1140)
Q Consensus 552 i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~ 631 (1140)
++-...-..+.+.+|++.++..+.++++.+.+..++-...||.+.+++||++-.|.-+|+-.+++..++ .
T Consensus 318 ~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~----------~ 387 (748)
T KOG4541|consen 318 LQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLG----------S 387 (748)
T ss_pred HHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHH----------H
Confidence 987776656667889999999999999998887766666899999999999999999999655443322 1
Q ss_pred ccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHHHhh
Q 001147 632 HQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFA 711 (1140)
Q Consensus 632 ~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~ 711 (1140)
+.+..++.+++.+|.+++.|....+.+...-..+...++++.+... .|++.|
T Consensus 388 ~~LqpL~~Rf~~~~nq~~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~----~Lf~fL------------------------ 439 (748)
T KOG4541|consen 388 NKLQPLPSRFFTYFNQHNQGKFVLDIIVRLSLTSGTAYAGQKDLQR----SLFQFL------------------------ 439 (748)
T ss_pred hhccccHHHHHHHhcccchhhHHHHHHHHHHHhccccccccchhHH----HHHHHH------------------------
Confidence 2334567788999998888888888888877788877777766521 122211
Q ss_pred chhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHH-HHHhhh
Q 001147 712 NDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCL-LERLRG 790 (1140)
Q Consensus 712 ~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~l-l~~l~G 790 (1140)
...+|+++|.+.+ .+|.+.++..+...+-.+.+..+...-.++++++.-...+ +.++.|
T Consensus 440 ------------~~~~~~c~glm~s--------~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~ 499 (748)
T KOG4541|consen 440 ------------VLSAYGCRGLMAS--------NQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYG 499 (748)
T ss_pred ------------HHHHhhhhhHHHH--------hhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhh
Confidence 1234556665433 3344555655555555555554432223556666455555 678899
Q ss_pred hhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcC
Q 001147 791 AANATEPRTQKAIYEMGFSVMNPVLLLLEVYKH 823 (1140)
Q Consensus 791 i~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~ 823 (1140)
-..+..+++....++.=+..+..+.+++..|..
T Consensus 500 ~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~ls 532 (748)
T KOG4541|consen 500 AASATRPRTQRAIYEEGLSDLNLVLRLLENYLS 532 (748)
T ss_pred hhcccCcchHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 888888887766777666666666666655533
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.6e-08 Score=113.90 Aligned_cols=561 Identities=16% Similarity=0.159 Sum_probs=292.1
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCC--chhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCC
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQ--VANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSP 79 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~--~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~ 79 (1140)
++.|+.+...+.+|+.-|+--...-+||-+.+ +.-+.--|.-.||+-+...|+.++++...-+|.-+++=+. +.
T Consensus 27 ~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lg----d~ 102 (885)
T KOG2023|consen 27 SETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLG----DA 102 (885)
T ss_pred hHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhcc----Cc
Confidence 34578899999999999998888888886554 4566778888999999999999999887777777776442 34
Q ss_pred hhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCC-CCCCCCCcHHHHHH
Q 001147 80 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS-TSSAMGLPREFHEQ 158 (1140)
Q Consensus 80 ~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~-~ss~~~~~~~~h~k 158 (1140)
++.+|.-.-.++-.|+-+|-.. .|+..++.+.+++.+. +..++.=+..-|+-+.++-+.- .+-....+..
T Consensus 103 ~~lIr~tvGivITTI~s~~~~~----~wpelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~---- 173 (885)
T KOG2023|consen 103 SPLIRATVGIVITTIASTGGLQ----HWPELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN---- 173 (885)
T ss_pred hHHHHhhhhheeeeeecccccc----cchhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchH----
Confidence 5566665555555555444333 6788999999999752 3345555555555555543321 1100111221
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccC
Q 001147 159 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 238 (1140)
Q Consensus 159 ~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1140)
--+++.+++ .++ +.+.+-..++.|+..++ ...+- ..
T Consensus 174 -------~mipkfl~f--------~~h--------~spkiRs~A~~cvNq~i---~~~~q--al---------------- 209 (885)
T KOG2023|consen 174 -------IMIPKFLQF--------FKH--------PSPKIRSHAVGCVNQFI---IIQTQ--AL---------------- 209 (885)
T ss_pred -------HhHHHHHHH--------HhC--------CChhHHHHHHhhhhhee---ecCcH--HH----------------
Confidence 123333332 111 13455567777777433 21110 00
Q ss_pred CCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHHHH
Q 001147 239 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHH 318 (1140)
Q Consensus 239 ~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~y 318 (1140)
...-+.+++.+|.+.. + .+|+.+...-..++-|--+|.+= -.-+
T Consensus 210 -----------------~~~iD~Fle~lFalan----D-------~~~eVRk~vC~alv~Llevr~dk--------l~ph 253 (885)
T KOG2023|consen 210 -----------------YVHIDKFLEILFALAN----D-------EDPEVRKNVCRALVFLLEVRPDK--------LVPH 253 (885)
T ss_pred -----------------HHHHHHHHHHHHHHcc----C-------CCHHHHHHHHHHHHHHHHhcHHh--------cccc
Confidence 0111446666776532 1 35778888777788887766431 2336
Q ss_pred HHHHHHhhhhhcCChhHHHHHhhhCCChhhHHHHHHHHHHHHhcc-ChhhHHhhhhccCcchhHHHHHHHHHHHHHHHhh
Q 001147 319 LLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVT-TPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMM 397 (1140)
Q Consensus 319 l~~~l~~~~~~l~~~~~~~~~~~~g~~~~~~~e~c~~l~~l~~~~-~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 397 (1140)
+..+++-.+...+. .+++.-.|.|-.+..+++.- +...+.. ++.++ ..-.+.. |
T Consensus 254 l~~IveyML~~tqd-----------~dE~VALEACEFwla~aeqpi~~~~L~p---------~l~kl---iPvLl~~-M- 308 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQD-----------VDENVALEACEFWLALAEQPICKEVLQP---------YLDKL---IPVLLSG-M- 308 (885)
T ss_pred hHHHHHHHHHHccC-----------cchhHHHHHHHHHHHHhcCcCcHHHHHH---------HHHHH---HHHHHcc-C-
Confidence 66666655544432 13455578899999998753 1111111 12111 1111211 1
Q ss_pred cccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCC-ccchh----hc
Q 001147 398 NNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNG-EFNYL----QA 472 (1140)
Q Consensus 398 ~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d-~~e~~----~~ 472 (1140)
.+.+--..||+ . .+ .....|.. .+ .|=..|..+|...-.+...+||| |||+. ..
T Consensus 309 -------~Ysd~D~~LL~--~--~e------eD~~vpDr-ee---DIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~ 367 (885)
T KOG2023|consen 309 -------VYSDDDIILLK--N--NE------EDESVPDR-EE---DIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFS 367 (885)
T ss_pred -------ccccccHHHhc--C--cc------ccccCCch-hh---hccchhhhchhccCccccccccccccccccccccc
Confidence 11111122222 1 00 00111110 00 11123444544433322212221 11111 22
Q ss_pred cHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhhHhccCC-CCCccCChhh
Q 001147 473 SISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEG-EGEIPVVPNA 551 (1140)
Q Consensus 473 d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i~g~~l~~~~-~ge~~~ip~~ 551 (1140)
||.+.+-.=..+..++..-.++.++.+..++.+.. ++ +.|..-| --|+..|++ |+.+ +|=.|.+
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L-------~~-~~W~vrE---agvLAlGAI-AEGcM~g~~p~L--- 432 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL-------SS-EEWKVRE---AGVLALGAI-AEGCMQGFVPHL--- 432 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc-------Cc-chhhhhh---hhHHHHHHH-HHHHhhhcccch---
Confidence 56677666666666777777888888888887653 11 1111111 133344554 3222 2322222
Q ss_pred HhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCcc
Q 001147 552 IQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQ 631 (1140)
Q Consensus 552 i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~ 631 (1140)
-.++-.++.+.. . . .|-+-+-.-|.++||.+ |+..++ + +
T Consensus 433 ----------------peLip~l~~~L~----D-K-----kplVRsITCWTLsRys~-wv~~~~--~------------~ 471 (885)
T KOG2023|consen 433 ----------------PELIPFLLSLLD----D-K-----KPLVRSITCWTLSRYSK-WVVQDS--R------------D 471 (885)
T ss_pred ----------------HHHHHHHHHHhc----c-C-----ccceeeeeeeeHhhhhh-hHhcCC--h------------H
Confidence 244445554432 1 1 23355666799999975 887431 1 1
Q ss_pred ccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHHHhh
Q 001147 632 HQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFA 711 (1140)
Q Consensus 632 ~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~ 711 (1140)
++.. .++..+++.+.- +..+|-+.+| ..|-.+-... +..| .|+...++....
T Consensus 472 ~~f~-----------------pvL~~ll~~llD------~NK~VQEAAc-sAfAtleE~A--~~eL--Vp~l~~IL~~l~ 523 (885)
T KOG2023|consen 472 EYFK-----------------PVLEGLLRRLLD------SNKKVQEAAC-SAFATLEEEA--GEEL--VPYLEYILDQLV 523 (885)
T ss_pred hhhH-----------------HHHHHHHHHHhc------ccHHHHHHHH-HHHHHHHHhc--cchh--HHHHHHHHHHHH
Confidence 1111 122223333332 2345555666 4544443221 1122 255666665543
Q ss_pred chhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhh
Q 001147 712 NDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGA 791 (1140)
Q Consensus 712 ~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~ll~~l~Gi 791 (1140)
.. +.+...+.-..+|-|+|..+-.....=....|.+.+|.|+.+.|..+... ++++. -+|+++..|
T Consensus 524 ~a--f~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~--------DKdLf----PLLEClSsi 589 (885)
T KOG2023|consen 524 FA--FGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS--------DKDLF----PLLECLSSI 589 (885)
T ss_pred HH--HHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc--------cchHH----HHHHHHHHH
Confidence 21 11122222235788888654332222235679999999999999987533 24444 999999999
Q ss_pred hhccCCCc
Q 001147 792 ANATEPRT 799 (1140)
Q Consensus 792 ~~a~~~~~ 799 (1140)
+.|.+..+
T Consensus 590 a~AL~~gF 597 (885)
T KOG2023|consen 590 ASALGVGF 597 (885)
T ss_pred HHHHhccc
Confidence 99988763
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.7e-05 Score=97.85 Aligned_cols=134 Identities=20% Similarity=0.225 Sum_probs=118.5
Q ss_pred CChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChhH
Q 001147 3 VNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGY 82 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~ 82 (1140)
+.|++||+.+...-..+.......+|+..+.++.++=+|+-.+|+.+.+.|+.|+.+.|.+||+-++.-+..- ..+-
T Consensus 19 ~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E---~~~~ 95 (1075)
T KOG2171|consen 19 EVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSE---TEPS 95 (1075)
T ss_pred hHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhc---cchH
Confidence 3499999999965555559999999999999999999999999999999999999999999999999977543 4789
Q ss_pred HHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCC
Q 001147 83 VQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 144 (1140)
Q Consensus 83 v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~ 144 (1140)
||+|++.++|.|.|..-++ .|+..++-+.+.+++ +++..+..++.||..+.+-|+..
T Consensus 96 vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 96 VRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccc
Confidence 9999999999999866544 799888888888876 57889999999999999999776
No 11
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.4e-07 Score=107.60 Aligned_cols=423 Identities=15% Similarity=0.120 Sum_probs=237.6
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001147 6 AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQA 85 (1140)
Q Consensus 6 ~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~ 85 (1140)
..|.++|.+|++++++|..|..||..-...+++.||+++++..+.+....+|+.+-.++|+.+..-+.+-. +.++-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~-~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELH-DHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHH-hCCchHHH
Confidence 46999999999999999999999998888899999999999999999999999999999998888775543 45568899
Q ss_pred HHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHHHHHHhhh
Q 001147 86 KISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLEL 165 (1140)
Q Consensus 86 ~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k~~~~f~~ 165 (1140)
|++..+|.+.-+ -+ +|.+-+.++....++ .+...+.-+.+|..+.+|..+.++. .| -.|+ ..|.+
T Consensus 81 QL~vavA~Lal~-~~-----~W~n~I~e~v~~~~~--~~~~~~~lLeiL~VlPEE~~~~~~~-~~----a~Rr--~e~~~ 145 (559)
T KOG2081|consen 81 QLAVAVAALALH-MP-----EWVNPIFELVRALSN--KHPAVPILLEILKVLPEETRDIRLT-VG----ANRR--HEFID 145 (559)
T ss_pred HHHHHHHHHHHH-hH-----hhcchHHHHHHHhhc--CCccHHHHHHHHHhCcHhhcchhhh-hh----hhhH--HHHHH
Confidence 999888877632 01 244455566665543 3333778999999999999886331 11 1111 22333
Q ss_pred h---hhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccCCCcc
Q 001147 166 D---YLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRS 242 (1140)
Q Consensus 166 ~---~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1140)
+ .-..+.......|+..- ......+.++|+++. ||--.+-.+-+.
T Consensus 146 ~l~~~~~~~L~~l~~lLe~~~---------l~~~~~l~~Vl~~l~---SWl~~~~~~~d~-------------------- 193 (559)
T KOG2081|consen 146 ELAAQVSKVLVFLSDLLERSD---------LKSSDDLEQVLRCLG---SWLRLHVFPPDQ-------------------- 193 (559)
T ss_pred HHHHhHHHHHHHHHHHHhhcC---------CChhhHHHHHHHHHh---hhhhhccCCHHH--------------------
Confidence 3 22333333334333221 123568888888888 777644432110
Q ss_pred ccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHHHHHHHH
Q 001147 243 ECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQL 322 (1140)
Q Consensus 243 ~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~ 322 (1140)
+...--++.+.|.... +..+-..|..|+..+-. ++.+.+.. + .|-..+
T Consensus 194 -------------v~a~~pLi~l~F~sl~-------------~~~lhe~At~cic~ll~----~~~~~~~~-~-~~~~~l 241 (559)
T KOG2081|consen 194 -------------VLASFPLITLAFRSLS-------------DDELHEEATECICALLY----CSLDRSEG-L-PLAAIL 241 (559)
T ss_pred -------------HHhhhHHHHHHHHHcc-------------cchhhHHHHHHHHHHHH----Hhhhhhcc-C-chhHHH
Confidence 1122235566665433 13467778888888654 22222211 1 244444
Q ss_pred HHhhhhhcCChhHHHHHhhhCCChhhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHHHHHhhccccc
Q 001147 323 LSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEE 402 (1140)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~g~~~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 402 (1140)
+.+. .++...-+... .|-+.+.....||++..+...|- ...+..+..++..+.. ++-.. ..-+
T Consensus 242 ~~~v-~~L~~~~~~a~---~~~d~d~~~a~~RIFtel~eaf~------~~i~~np~~~l~~vel----lLl~~---~h~~ 304 (559)
T KOG2081|consen 242 FIGV-IILETAFHLAM---AGEDLDKNEAICRIFTELGEAFV------VLISTNPEEFLRIVEL----LLLVA---GHND 304 (559)
T ss_pred hccc-cccchHHHHhh---cccCHHHHHHHHHHHHHHHHHHH------HHHhhCCCcchhHHHH----HHHhc---cCCc
Confidence 4443 34443333322 22244666677888888775431 1112223334432221 11111 1111
Q ss_pred ccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCCccchhhccHHHHHHHHH
Q 001147 403 GTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLS 482 (1140)
Q Consensus 403 ~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d~~e~~~~d~~~~~~ql~ 482 (1140)
.+...+.+.+|.++-.++.-. .. .-+..+|++|...-+.....-..-+.|.++-++ +.+.++++..
T Consensus 305 ----~evie~SF~fW~~lse~l~~~-----~~----~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~E-e~~~f~~fR~ 370 (559)
T KOG2081|consen 305 ----TEVIEASFNFWYSLSEELTLT-----DD----DEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPE-EESEFFEFRL 370 (559)
T ss_pred ----hhhhhhhHHhhhhhHHHHhcc-----cc----HHHHHHhHHHHHHHHHHHHHHccCCCccccCcc-chhHHHHHHH
Confidence 388899999999988754210 11 124567888755433322111111111111111 1123444444
Q ss_pred HHHHHhh----hc-hhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhhHhccCCCCCccCChhhH
Q 001147 483 SYALIAR----AA-IDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAI 552 (1140)
Q Consensus 483 ~i~~l~R----~~-~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i~g~~l~~~~~ge~~~ip~~i 552 (1140)
.+|-+.+ +. -+.++..+...+.+ +...||...-.+.+..++...-...|...+|.-+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e-------------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl 432 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE-------------NNASWEEVEAALFILRAVAKNVSPEENTIMPEVL 432 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc-------------CCCchHHHHHHHHHHHHHhccCCccccchHHHHH
Confidence 4443332 11 22333333333321 1245666777777777776554445555666433
No 12
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.99 E-value=4e-09 Score=105.86 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHHH
Q 001147 80 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC 159 (1140)
Q Consensus 80 ~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k~ 159 (1140)
|+||++|++.++|.|.++.||+ .|+++++++.+.+.+ ++.+...++.+|..+.+|+.... ....+.++++..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~----~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~--~~~~~~~r~~~l 72 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQ----QWPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFR--RSSLSQERRREL 72 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSH--CCHSHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChh----hCchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhh--chhhhHHHHHHH
Confidence 6899999999999999999988 788999999999985 78899999999999999997521 124556666667
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccCC
Q 001147 160 RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSS 239 (1140)
Q Consensus 160 ~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1140)
+..+++. ...||....+++.+.... ....+...+|+|+.++++|.....
T Consensus 73 ~~~l~~~-~~~i~~~l~~~l~~~~~~--------~~~~~~~~~L~~l~s~i~~~~~~~---------------------- 121 (148)
T PF08389_consen 73 KDALRSN-SPDILEILSQILSQSSSE--------ANEELVKAALKCLKSWISWIPIEL---------------------- 121 (148)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCHC--------CHHHHHHHHHHHHHHHTTTS-HHH----------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhccc--------cHHHHHHHHHHHHHHHHHhCCHHH----------------------
Confidence 7777766 888888877777655421 126789999999999999988775
Q ss_pred CccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHH
Q 001147 240 KRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 296 (1140)
Q Consensus 240 ~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL 296 (1140)
+.+.+++..+|.+.. ++++...|.+||
T Consensus 122 -----------------i~~~~~l~~~~~~l~-------------~~~~~~~A~~cl 148 (148)
T PF08389_consen 122 -----------------IINSNLLNLIFQLLQ-------------SPELREAAAECL 148 (148)
T ss_dssp -----------------HHSSSHHHHHHHHTT-------------SCCCHHHHHHHH
T ss_pred -----------------hccHHHHHHHHHHcC-------------CHHHHHHHHHhC
Confidence 556678888887642 256899999997
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.0016 Score=79.60 Aligned_cols=132 Identities=14% Similarity=0.218 Sum_probs=116.7
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhccCcc---------CHHHHHHHHHHHHHH
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSFL---------TADEKKSLIGFCLCF 71 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~-~~~f~a~~~L~~~i~~~W~~l---------~~~~k~~lr~~ll~~ 71 (1140)
|++|+.||+.|.++.+.|+-...|-+|.-....+ .|+=-|+--+|+.|.+.|..- ++++|.-+|+-++.+
T Consensus 18 ~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~ 97 (1010)
T KOG1991|consen 18 AKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILET 97 (1010)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHH
Confidence 5789999999999999999999999999888887 558889999999999999875 789999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhC
Q 001147 72 VMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 142 (1140)
Q Consensus 72 l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs 142 (1140)
+++- |..+|.++..++-.|+|...++ .|+.+++.+...+++ ++..+..-||-.|..++.-+.
T Consensus 98 iv~~----p~~iRvql~~~l~~Ii~~D~p~----~Wp~l~d~i~~~Lqs-~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 98 IVQV----PELIRVQLTACLNTIIKADYPE----QWPGLLDKIKNLLQS-QDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred HHhC----chHHHHHHHHHHHHHHhcCCcc----cchhHHHHHHHHhcC-cchhhHHHHHHHHHHHHHHHh
Confidence 9764 7999999999999999977665 899999999999986 356677889999999987765
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.0027 Score=75.30 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=87.0
Q ss_pred CCChHHHHHHHHhhccCC--CcHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-----------hccCccCHHHHHHHHHH
Q 001147 2 HVNPAAAEATILGLCQSP--QPYKACQFILENS-QVANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIGF 67 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~--~~~~~c~~iL~~S-~~~~~~f~a~~~L~~~i~-----------~~W~~l~~~~k~~lr~~ 67 (1140)
+..|..||+.|.+++++. .-+...-.+|.+. +++++..-|.-.||+.+. +||-.++.+.|+++|++
T Consensus 15 ~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~ 94 (859)
T KOG1241|consen 15 QNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNN 94 (859)
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456999999999999743 3334444556555 456999999999999876 55999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcc
Q 001147 68 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLG 120 (1140)
Q Consensus 68 ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~ 120 (1140)
++.-+- ...+.+.+...+++|.|..-+-|. +.|+.++..++..+-.
T Consensus 95 il~tL~----~~ep~~~s~Aaq~va~IA~~ElP~---n~wp~li~~lv~nv~~ 140 (859)
T KOG1241|consen 95 ILRTLG----SPEPRRPSSAAQCVAAIACIELPQ---NQWPELIVTLVSNVGE 140 (859)
T ss_pred HHHHcC----CCCCCccchHHHHHHHHHHhhCch---hhCHHHHHHHHHhccc
Confidence 999772 245667778889999998766655 3688899888887753
No 15
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.47 E-value=5.1e-07 Score=79.30 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=62.2
Q ss_pred HHHHHHhhccC-CCcHHHHHHHH-hcCCchhHHHHHHHHHHHHHhhccC--------ccCHHHHHHHHHHHHHHHH
Q 001147 8 AEATILGLCQS-PQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREWS--------FLTADEKKSLIGFCLCFVM 73 (1140)
Q Consensus 8 Ae~~l~~f~~~-~~~~~~c~~iL-~~S~~~~~~f~a~~~L~~~i~~~W~--------~l~~~~k~~lr~~ll~~l~ 73 (1140)
||+.|.+|+++ |+.+..|..|+ ..+.+++++++|+..||+.|.+.|. .+|+++|..||+++++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 99999999999 5555889999999999999999999 9999999999999999875
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00058 Score=80.94 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=123.7
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhccC-----ccCHHHHHHHHHHHHHHHHhc
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWS-----FLTADEKKSLIGFCLCFVMQH 75 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~-~~~f~a~~~L~~~i~~~W~-----~l~~~~k~~lr~~ll~~l~~~ 75 (1140)
|..++-||+-|.+....|.-+.....|.-+.+++ .+.+.|+--+|+.|.|.|. .+|+++|..||.-++....+
T Consensus 14 ~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~E- 92 (978)
T KOG1993|consen 14 HIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSDE- 92 (978)
T ss_pred cccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhccc-
Confidence 4457889999999999999999888887777766 8899999999999999996 47999999999988876643
Q ss_pred CCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhccc---CChhhHHHHHHHHHHHHhhhCCCCCCCCCCc
Q 001147 76 ASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI---HGVDTQFIGINFLESLVSEFSPSTSSAMGLP 152 (1140)
Q Consensus 76 ~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~ 152 (1140)
....+..|...++++|.|.++ |.+|++.|+++.+.++++ |+...+.-.+-.|..++-++++.
T Consensus 93 ---~~nQlaiQ~AvlisrIARlDy----PreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~-------- 157 (978)
T KOG1993|consen 93 ---ENNQLAIQNAVLISRIARLDY----PREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATK-------- 157 (978)
T ss_pred ---chhHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh--------
Confidence 347788889999999998654 448999999999999875 23445556677777888777765
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001147 153 REFHEQCRISLELDYLKTFYCWARDAA 179 (1140)
Q Consensus 153 ~~~h~k~~~~f~~~~L~~if~~~~~~L 179 (1140)
.-.++++.|.+. -+.|+......+
T Consensus 158 --RL~a~rk~F~el-~~~I~~~l~~~l 181 (978)
T KOG1993|consen 158 --RLLADRKAFYEL-APEILTILAPIL 181 (978)
T ss_pred --HHhhhhHHHHHH-hHHHHHHHHHHH
Confidence 233466678765 567777443333
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.56 Score=56.30 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=111.0
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCcc-----CHHHHHHHHHHHHHHHHhc
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFL-----TADEKKSLIGFCLCFVMQH 75 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~~l-----~~~~k~~lr~~ll~~l~~~ 75 (1140)
+..|..||+.|.++.+.|.-.-.|-+|+... -...++--|+--+|+.|.|.|+.+ ++++|.+.|.|+.+-++..
T Consensus 17 a~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lienil~v 96 (970)
T COG5656 17 AGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENILDV 96 (970)
T ss_pred cchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999777 456999999999999999999984 5678888999988887766
Q ss_pred CCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhh
Q 001147 76 ASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 141 (1140)
Q Consensus 76 ~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~ef 141 (1140)
....|.-.|..+...+..|.--+|+.+ -|+ +++....++.+ +...+...|+..+.++-.-+
T Consensus 97 ~l~sp~~tr~~l~ail~~I~seD~ps~---~wg-l~p~~~nll~s-~ea~~vy~gLlcl~elfkay 157 (970)
T COG5656 97 FLYSPEVTRTALNAILVNIFSEDKPSD---LWG-LFPKAANLLRS-SEANHVYTGLLCLEELFKAY 157 (970)
T ss_pred HhcCCchHHHHHHHHHHHhccccCchh---hcc-cchHHHHhhcc-cchhHHHHHHHHHHHHHHHH
Confidence 545566677778888888888888842 576 88888888875 34677889999988876544
No 18
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=1.1 Score=54.53 Aligned_cols=166 Identities=12% Similarity=0.123 Sum_probs=126.1
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhccC-------ccCHHHHHHHHHHHHHHHH
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQ-VANARFQAAAAIRDAAMREWS-------FLTADEKKSLIGFCLCFVM 73 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~-~~~~~f~a~~~L~~~i~~~W~-------~l~~~~k~~lr~~ll~~l~ 73 (1140)
|+.|+-||+.|.+..-++.---....++.+++ .+.++--|+..+|+.+.|+|. .+..++|+.||.-++....
T Consensus 19 ps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl 98 (960)
T KOG1992|consen 19 PSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLML 98 (960)
T ss_pred CccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHh
Confidence 78899999999999987665556677888888 568889999999999999995 4567789999999988765
Q ss_pred hcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHH-HHhhhCCC-CCCCCCC
Q 001147 74 QHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLES-LVSEFSPS-TSSAMGL 151 (1140)
Q Consensus 74 ~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~-lv~efs~~-~ss~~~~ 151 (1140)
+ .+..+..++..++..|.|+++|+ .|++.+++++..+++ +--+...|..-... +---|..- || .-
T Consensus 99 ~----s~~~iQ~qlseal~~Ig~~DFP~----kWptLl~dL~~~ls~--~D~~~~~gVL~tahsiFkr~R~efrS---da 165 (960)
T KOG1992|consen 99 S----SPFNIQKQLSEALSLIGKRDFPD----KWPTLLPDLVARLSS--GDFNVINGVLVTAHSIFKRYRPEFRS---DA 165 (960)
T ss_pred c----CcHHHHHHHHHHHHHHhccccch----hhHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHhcCccccc---HH
Confidence 5 35788999999999999999999 799999999999874 33344455444443 44455543 44 23
Q ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 001147 152 PREFHEQCRISLELDYLKTFYCWARDAALS 181 (1140)
Q Consensus 152 ~~~~h~k~~~~f~~~~L~~if~~~~~~L~~ 181 (1140)
-|..-.+|-.+|..- |..+|+...++.+.
T Consensus 166 L~~EIK~vLd~f~~P-lt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 166 LWLEIKLVLDRFAEP-LTDLFRKTMELIQR 194 (960)
T ss_pred HHHHHHHHHHhhHhH-HHHHHHHHHHHHhh
Confidence 466666777777754 78888877766543
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.63 E-value=0.093 Score=64.22 Aligned_cols=133 Identities=9% Similarity=0.087 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhccCc-----cCHHHHHHHHHHHHHHHHhc
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF-----LTADEKKSLIGFCLCFVMQH 75 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~-~~~f~a~~~L~~~i~~~W~~-----l~~~~k~~lr~~ll~~l~~~ 75 (1140)
|..++.||+-|.++...++---+...|-...+++ ..+.-|+--+|+.|.++|.. +.++++..||.-+++.+.+-
T Consensus 18 p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~s 97 (947)
T COG5657 18 PPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIISS 97 (947)
T ss_pred CchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHcc
Confidence 6678999999999999998777777776666555 77888888999999999986 56777789999999998775
Q ss_pred CCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCC
Q 001147 76 ASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 143 (1140)
Q Consensus 76 ~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~ 143 (1140)
. .+..-|...++++|.+..+|| +|++.++++...++. ++-....-.+..+..++.++..
T Consensus 98 ~----n~l~iq~a~avs~IA~~DfPd----eWpTL~~DL~~~Ls~-~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 98 S----NQLQIQNALAVSRIARLDFPD----EWPTLVPDLLSLLSE-KDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred c----chHHHHHHHHHHHHHhccCcc----cchhHHHHHHhhhcc-cchHHHHHHHHHHHHHHHHHhh
Confidence 3 343448899999999988887 899999999999974 4444555566666666666653
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.93 E-value=5 Score=47.13 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=81.9
Q ss_pred CCChHHHHHHHHhhccCCCcHHH----HHHHHhcCCchhHHHHHHHHHHHHHh-----------hccCccCHHHHHHHHH
Q 001147 2 HVNPAAAEATILGLCQSPQPYKA----CQFILENSQVANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIG 66 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~----c~~iL~~S~~~~~~f~a~~~L~~~i~-----------~~W~~l~~~~k~~lr~ 66 (1140)
|..|..||+.|.++++.. -.++ .+.+-+.-+++|..+.|..+||+.+. ++|-.++.+.|.++|.
T Consensus 19 ~n~rl~aE~ql~~l~~~d-F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~ 97 (858)
T COG5215 19 PNARLRAEAQLLELQSGD-FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKG 97 (858)
T ss_pred CCccccHHHHHHHhcccc-HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHH
Confidence 566889999999998643 2222 23334566789999999999999876 4599999999999998
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhc
Q 001147 67 FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVL 119 (1140)
Q Consensus 67 ~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~ 119 (1140)
-.+.-+.. .++-.-+...+++|.|.+-+-+. ..|+.++.+++..+-
T Consensus 98 ~al~aL~s----~epr~~~~Aaql~aaIA~~Elp~---~~wp~lm~~mv~nvg 143 (858)
T COG5215 98 MALRALKS----PEPRFCTMAAQLLAAIARMELPN---SLWPGLMEEMVRNVG 143 (858)
T ss_pred HHHHHhcC----CccHHHHHHHHHHHHHHHhhCcc---ccchHHHHHHHHhcc
Confidence 88886632 34555667778899999876655 368888877776653
No 21
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.82 E-value=7.5 Score=48.34 Aligned_cols=130 Identities=9% Similarity=0.083 Sum_probs=98.8
Q ss_pred CCChHHHHHHHHhhccCCCcHH-HHHHHHhc-CCchhHHHHHHHHHHHHHhhccCcc----------CHHHHHHHHHHHH
Q 001147 2 HVNPAAAEATILGLCQSPQPYK-ACQFILEN-SQVANARFQAAAAIRDAAMREWSFL----------TADEKKSLIGFCL 69 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~-~c~~iL~~-S~~~~~~f~a~~~L~~~i~~~W~~l----------~~~~k~~lr~~ll 69 (1140)
+..|.+||.-+.++...+.--. +|.-.... ++-+-.| .|+-.|++.+..+|.-. +.+.|.-||+-++
T Consensus 18 ~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ-~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll 96 (1005)
T KOG2274|consen 18 QNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQ-IALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLL 96 (1005)
T ss_pred hhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHH-HHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHH
Confidence 3569999999999998777333 44444544 3444445 45588999999999765 4566777888888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhh
Q 001147 70 CFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 141 (1140)
Q Consensus 70 ~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~ef 141 (1140)
+-+. +-.+.+++....++..|..-.||| +|+..+.-+.+++.+ ++.++..-+++.|.++..|.
T Consensus 97 ~~l~----~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 97 NLLD----DSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred hhhh----ccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence 8765 346888999999999999999999 899999999998875 56666666777777776665
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.94 E-value=4.4e+02 Score=34.67 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcCCh
Q 001147 746 QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHES 825 (1140)
Q Consensus 746 ~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~~~ 825 (1140)
+.|..++..+.+..+..++..+ .+.-. ..++.+.-++.+... ++=.++..++..+..+..-=.-+.
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d-------~~~a~---~~l~~l~El~e~~pk----~l~~~l~~ii~~~l~Ia~n~~l~~ 263 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGD-------DDAAK---SALEALIELLESEPK----LLRPHLSQIIQFSLEIAKNKELEN 263 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccc-------hHHHH---HHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHhhcccccH
Confidence 3456666555555555544322 22121 445555555555422 112333333555555555555566
Q ss_pred HHHHHHHHHHHHHhhccc--cccccchhhhHHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHh
Q 001147 826 AVVYLLLKFVVDWVDGQI--SYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNL 903 (1140)
Q Consensus 826 ~v~~~iL~l~~e~v~~~~--~~l~~~~~~~Lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~ 903 (1140)
.+-..+|.|+..++++-- .+...+-+..|+-.++.++.--... ..-+. .+....+.++.-+.--...+..+.-.
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D--~ew~~--~d~~ded~~~~~~~~A~~~lDrlA~~ 339 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD--DEWSN--EDDLDEDDEETPYRAAEQALDRLALH 339 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc--hhhcc--ccccccccccCcHHHHHHHHHHHHhc
Confidence 677777888877776511 1111112233333333332111100 00000 00011122233455555567777777
Q ss_pred hcCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHH
Q 001147 904 CSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLD 983 (1140)
Q Consensus 904 l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~ 983 (1140)
+.|+++ .-+++--+...++- .=++.|++-.--|..+.|-|++.+.. .+-.++..+.
T Consensus 340 L~g~~v--------------~p~~~~~l~~~l~S------~~w~~R~AaL~Als~i~EGc~~~m~~----~l~~Il~~Vl 395 (1075)
T KOG2171|consen 340 LGGKQV--------------LPPLFEALEAMLQS------TEWKERHAALLALSVIAEGCSDVMIG----NLPKILPIVL 395 (1075)
T ss_pred CChhhe--------------hHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHcccHHHHHH----HHHHHHHHHH
Confidence 776653 12222222222222 23677888888888899999998753 5778999999
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHH
Q 001147 984 FGLHHQDSEIVDMCLRALRALASYHY 1009 (1140)
Q Consensus 984 ~Gl~~~d~~I~~~~l~~l~~l~~~~~ 1009 (1140)
.|++.+++.|--.+|.++..+.+-+.
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~ 421 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQ 421 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999998764
No 23
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=59.80 E-value=3.3e+02 Score=32.18 Aligned_cols=220 Identities=13% Similarity=0.096 Sum_probs=108.1
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCC
Q 001147 24 ACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFT 103 (1140)
Q Consensus 24 ~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~ 103 (1140)
.+-.....+.++.+.-.+++.+--.+++ |..=+ .+..++-...-......++-.+.+...+++-|+| |+.-.+
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK-~~~~~-----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-aLv~R~ 265 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNK-WPDDD-----DLDEFLDSLLQSISSSEDSELRPQALEILIWITK-ALVMRG 265 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcC-CCChh-----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-HHHHcC
Confidence 3334445556677777777777655555 64322 2333333322111112233333344444444443 111111
Q ss_pred CCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 001147 104 SSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVT 183 (1140)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~ 183 (1140)
...-..++..+.+++. +++....+.+-+.-++.+... -++.+.|--+|.-+++ ++|...+..|.+..
T Consensus 266 ~~~~~~~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~------~l~~~~~a~vklLykQ----R~F~~~~p~L~~~~ 332 (415)
T PF12460_consen 266 HPLATELLDKLLELLS---SPELGQQAAKAFGILLSDSDD------VLNKENHANVKLLYKQ----RFFTQVLPKLLEGF 332 (415)
T ss_pred CchHHHHHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHH------hcCccccchhhhHHhH----HHHHHHHHHHHHHH
Confidence 1122357777777775 455555666666666666322 2334456666665554 44554443333222
Q ss_pred HHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccCCCccccccccCCccchHHhhccchH
Q 001147 184 KQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHI 263 (1140)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l 263 (1140)
+.. +...-...|.-+.++|.+.+......+. ++++
T Consensus 333 ~~~--------~~~~k~~yL~ALs~ll~~vP~~vl~~~l-------------------------------------~~Ll 367 (415)
T PF12460_consen 333 KEA--------DDEIKSNYLTALSHLLKNVPKSVLLPEL-------------------------------------PTLL 367 (415)
T ss_pred hhc--------ChhhHHHHHHHHHHHHhhCCHHHHHHHH-------------------------------------HHHH
Confidence 110 1113335566666777766644321111 4577
Q ss_pred HHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHHHHHHHHHHhhh
Q 001147 264 VWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGIL 327 (1140)
Q Consensus 264 ~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~l~~~~ 327 (1140)
.++.+-.. . +++.+...++++|..+..= + ...-..|+..++..+.
T Consensus 368 PLLlqsL~---~--------~~~~v~~s~L~tL~~~l~~------~--~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 368 PLLLQSLS---L--------PDADVLLSSLETLKMILEE------A--PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHhC---C--------CCHHHHHHHHHHHHHHHHc------C--HHHHHHHHHHHHHHHH
Confidence 77665432 1 2456888889998776531 1 1234557777766554
No 24
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.38 E-value=5.8e+02 Score=33.05 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHH
Q 001147 971 STEAFAHVLGTLDFGLH-HQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLL 1049 (1140)
Q Consensus 971 ~~~~f~~l~~sl~~Gl~-~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 1049 (1140)
.+..+...+++...||. +.+..|.-.+.-+|..+.+..-.. .+...+| .+.+++.+|++
T Consensus 496 d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~----~e~~~~h-----------vp~~mq~lL~L----- 555 (1010)
T KOG1991|consen 496 DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA----DEKVSAH-----------VPPIMQELLKL----- 555 (1010)
T ss_pred ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh----hhhHhhh-----------hhHHHHHHHHH-----
Confidence 35678889999999999 778888777777877777443211 1112222 13444444443
Q ss_pred HhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHH
Q 001147 1050 LFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIE 1086 (1140)
Q Consensus 1050 l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~ 1086 (1140)
..++.++ .++.++-.+++-..+...-++.+|++
T Consensus 556 -~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q 588 (1010)
T KOG1991|consen 556 -SNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQ 588 (1010)
T ss_pred -HHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 3455544 67888888887777666555555543
No 25
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.04 E-value=7.2e+02 Score=33.98 Aligned_cols=215 Identities=11% Similarity=0.045 Sum_probs=102.6
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHH
Q 001147 655 LDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLS 734 (1140)
Q Consensus 655 l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~ 734 (1140)
.|.+++.|...+. |+.+--.+ +.+..|+.-......++..|.++.-+..- +-.-+.++|-.-...+|+-
T Consensus 814 fD~yLk~Il~~l~----e~~ialRt--kAlKclS~ive~Dp~vL~~~dvq~~Vh~R-----~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 814 FDPYLKLILSVLG----ENAIALRT--KALKCLSMIVEADPSVLSRPDVQEAVHGR-----LNDSSASVREAALDLVGRF 882 (1692)
T ss_pred hHHHHHHHHHHhc----CchHHHHH--HHHHHHHHHHhcChHhhcCHHHHHHHHHh-----hccchhHHHHHHHHHHhhh
Confidence 5667777777764 33321111 23444444444555667778877766431 1111334566667777764
Q ss_pred HhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHH
Q 001147 735 AYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPV 814 (1140)
Q Consensus 735 ~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~ 814 (1140)
+.+ .++.-.+|+.++..-+ . -.++..+. .++.++| .+|.+... |..+-.++
T Consensus 883 vl~--~~e~~~qyY~~i~erI-------l----DtgvsVRK----RvIKIlr---dic~e~pd---------f~~i~~~c 933 (1692)
T KOG1020|consen 883 VLS--IPELIFQYYDQIIERI-------L----DTGVSVRK----RVIKILR---DICEETPD---------FSKIVDMC 933 (1692)
T ss_pred hhc--cHHHHHHHHHHHHhhc-------C----CCchhHHH----HHHHHHH---HHHHhCCC---------hhhHHHHH
Confidence 432 3445556655554322 1 12244444 3335554 55655432 22225567
Q ss_pred HHHHHHhcCChH-HHHHHHHHHHHHhhccc-cccccc-hhhhHHHHHHHHHHHhhhccc--Ccc---cc-cc-ccccccc
Q 001147 815 LLLLEVYKHESA-VVYLLLKFVVDWVDGQI-SYLEVQ-ETNIVIDFCTRLLQLYSSHNI--GKM---LM-TQ-SSCLLGE 884 (1140)
Q Consensus 815 ~~ll~~y~~~~~-v~~~iL~l~~e~v~~~~-~~l~~~-~~~~Lf~~~~~ll~~y~~~~~--~~~---~~-~~-~~~~~~~ 884 (1140)
.+++..-.+..+ |...+.+-|-++=-..- ....++ .+..++-++..+...+.--+. .+. ++ .+ .......
T Consensus 934 akmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~ 1013 (1692)
T KOG1020|consen 934 AKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKES 1013 (1692)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhh
Confidence 778887777777 55554444444321111 112121 123333333322222210000 000 00 00 0012334
Q ss_pred hhhhhhhhHHHHHHHHHHhhcCCCc
Q 001147 885 AKTEKYKDLRALFQLLSNLCSKDLV 909 (1140)
Q Consensus 885 ~~~e~~k~l~~ll~lL~~~l~~~~~ 909 (1140)
..+..++.+...++++.+++.....
T Consensus 1014 ~~~v~~~~v~~~~~L~~~cl~~~i~ 1038 (1692)
T KOG1020|consen 1014 VKPVALAKVTHVLNLLTHCLVEKIS 1038 (1692)
T ss_pred hhHHHHhhcchHHHHHHHHHHHHHH
Confidence 5667788888899999998876653
No 26
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=48.12 E-value=3.7e+02 Score=32.05 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHH
Q 001147 726 SLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 805 (1140)
Q Consensus 726 ~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~ 805 (1140)
-+|||+-+++....+. ...+...++.-+...+..++..+.- +..- -.+.+.+..+++-+.......+-
T Consensus 45 ylMk~iMRvl~~~~e~--~~p~~~~il~~L~~il~~v~kNPsn------P~Fn---HylFEsi~~lir~~~~~~~~~v~- 112 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQED--ILPIAVEILQHLTAILKEVSKNPSN------PRFN---HYLFESIGALIRFVCEADPEAVS- 112 (435)
T ss_dssp HHHHHHHHHHHHSTTT--TGGGHHHHHHHHHHHHHHHHTS---------HHHH---HHHHHHHHHHHHHS-GGGHH----
T ss_pred HHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhCCCC------cchh---hhHHHHHHHHHHhccCCChhHHH-
Confidence 4788877776644332 2345667777778888888877631 1111 03445554444443222111112
Q ss_pred HHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhccc-ccccc-----------c-----hhhhHHHHHHHHHHHhhh
Q 001147 806 MGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQI-SYLEV-----------Q-----ETNIVIDFCTRLLQLYSS 867 (1140)
Q Consensus 806 ~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~-~~l~~-----------~-----~~~~Lf~~~~~ll~~y~~ 867 (1140)
-|.+. +|.+..+++. +-.|.+-.++++++-+++... ..+.. + .++ ...+.++++.|.+
T Consensus 113 ~~E~~L~P~f~~ILq~--dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gn--iPalvrLL~a~i~ 188 (435)
T PF03378_consen 113 QFEEALFPPFQEILQQ--DVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGN--IPALVRLLQAYIK 188 (435)
T ss_dssp HHHHHHHHHHHHHHHT--T-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCC--cCcHHHHHHHHHH
Confidence 23333 6677766653 223444444444444444333 11111 1 122 2567788888876
Q ss_pred cccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCC
Q 001147 868 HNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDL 908 (1140)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~ 908 (1140)
+..... . .. ..+..++.++..+++++-
T Consensus 189 k~~~~i-~----------~~---~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 189 KDPSFI-V----------AN---NQLEPILGVFQKLIASKA 215 (435)
T ss_dssp HHGGG------------------S-CHHHHHHHHHHHT-TT
T ss_pred hCchhh-c----------ch---hhHHHHHHHHHHHHCCCC
Confidence 542211 0 11 223356777777777664
No 27
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.91 E-value=8.9e+02 Score=32.16 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHh--hChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q 001147 946 PKLCHDYFSLLSHLLE--VYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALA 1005 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e--~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~ 1005 (1140)
-+.++.-|.+|-.|+. .+.+..-.-+++.+..++..|-.|+....+.++...+-++..+.
T Consensus 752 ~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 752 VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 5688999999999994 33333322236788999999999977666555544444444443
No 28
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.96 E-value=2.5e+02 Score=35.24 Aligned_cols=180 Identities=22% Similarity=0.229 Sum_probs=103.6
Q ss_pred cccccchhhhHHHHHHHHHHHhh--Chhh-hhcCCHHHHHH-HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCC
Q 001147 940 GDLLKYPKLCHDYFSLLSHLLEV--YPET-VAQLSTEAFAH-VLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAG 1015 (1140)
Q Consensus 940 ~dll~yPkl~~~ff~Ll~~l~e~--~~~~-l~~l~~~~f~~-l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~ 1015 (1140)
+.+..|-|+...|+..|+.++.. -|+. +..+|+.-++- +++.+ .=+.+.|.+..+.=.+.|+.+++..-.+.+.|
T Consensus 212 ~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL-riLGq~d~daSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 212 DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL-RILGQNDADASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH-HHhcCCCccHHHHHHHHHHHHHhcccccccch
Confidence 37788999999999999998874 3333 45777654333 33333 34667789999988899988887654444444
Q ss_pred CccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhC--CCchh
Q 001147 1016 KVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--ANPPF 1093 (1140)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q--~~~~~ 1093 (1140)
+.-++.-|.|+.... ..+.+..--+..+=..++.-+.+... .+=+.|.-+|-.+++..++....++.=- ||+..
T Consensus 291 nAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirY--vaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 291 NAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRY--VALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred hHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceee--eehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 322332233322221 11222222222222222222232222 3446666777788888888777776532 55566
Q ss_pred HHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHc
Q 001147 1094 KSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEV 1133 (1140)
Q Consensus 1094 ~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~v 1133 (1140)
+.|-.|-.-.|.++ .|-+-..+.+-+|+..+
T Consensus 367 krralELs~~lvn~---------~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 367 KRRALELSYALVNE---------SNVRVMVKELLEFLESS 397 (866)
T ss_pred HHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHhc
Confidence 66666666666553 55566666666776654
No 29
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=43.65 E-value=66 Score=32.68 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 001147 946 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYH 1008 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~ 1008 (1140)
=++|+.-|+++..+.+.++..+ + +..+++.+..|++. +.+|-..|+..+..++...
T Consensus 41 LelRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999777654 2 56779999999998 9999999999998887443
No 30
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=42.55 E-value=60 Score=25.74 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 001147 946 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRAL 1004 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l 1004 (1140)
|.++.+-...|..+.+.+++.+. .....++..+.-.|+..+.+|...++.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 55666667777777777776643 35678888888999999999999999888754
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=38.70 E-value=4.7e+02 Score=27.69 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccC
Q 001147 975 FAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDY 1054 (1140)
Q Consensus 975 f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~ 1054 (1140)
+..++..+...++..-+.|++.+|.++..++..+.+.. ......++..++.. ..+.
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~----------------------~~~~~~~l~~Ll~~--~~~~ 106 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF----------------------EPYADILLPPLLKK--LGDS 106 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG----------------------HHHHHHHHHHHHHG--GG--
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH----------------------HHHHHHHHHHHHHH--Hccc
Confidence 34455677788888889999999999999997763221 12234444444442 2233
Q ss_pred CCchHHHhhhhHHHHHhcCH--HHH-HHHHHHHHHhCCCchhHHHHHHHHHHhhcC
Q 001147 1055 SPDMVGTAADALFPLILCEP--RLY-QRLGSELIERQANPPFKSRLANALQSLTSS 1107 (1140)
Q Consensus 1055 ~~~~~~~~s~~l~~Li~~~~--~~f-~~~~~~li~~q~~~~~~~~l~~af~~L~~~ 1107 (1140)
+..+...+..++..++...+ ... .........+ .+|..|....+++......
T Consensus 107 ~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 107 KKFIREAANNALDAIIESCSYSPKILLEILSQGLKS-KNPQVREECAEWLAIILEK 161 (228)
T ss_dssp -HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 33345667777888775444 222 3333333222 4577788888888777764
No 32
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=36.34 E-value=7.5e+02 Score=28.78 Aligned_cols=102 Identities=22% Similarity=0.180 Sum_probs=54.4
Q ss_pred hhhhhhhHHHHHHHHHHhhcCCCc-ccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhCh
Q 001147 886 KTEKYKDLRALFQLLSNLCSKDLV-DFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYP 964 (1140)
Q Consensus 886 ~~e~~k~l~~ll~lL~~~l~~~~~-nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~ 964 (1140)
.+++.||. .+.+++.+..++.. .-|+...+ ...++.-+--..++|-+..+--.+|=++-...+++.....
T Consensus 267 ~~w~~KD~--Al~Li~ala~k~~t~~~Gvt~~~----~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~--- 337 (370)
T PF08506_consen 267 NNWRSKDG--ALYLIGALASKGSTTKSGVTQTN----ELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRN--- 337 (370)
T ss_dssp T-HHHHHH--HHHHHHHHHBSS--BTTB-S-B-----TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGG---
T ss_pred ccHHHHHH--HHHHHHHHHhhhccccCCccccc----ccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHh---
Confidence 34566663 44555555554432 22331111 1123333445566675444455677666666655554442
Q ss_pred hhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 001147 965 ETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRA 1000 (1140)
Q Consensus 965 ~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~ 1000 (1140)
.+|++.+..++..+...|++.+.-|-..+.-+
T Consensus 338 ----~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 338 ----QLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp ----GS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 47889999999999999999887776666543
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=35.70 E-value=52 Score=22.75 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q 001147 978 VLGTLDFGLHHQDSEIVDMCLRALRALASY 1007 (1140)
Q Consensus 978 l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~ 1007 (1140)
++..+..++++.+.+|-..++.+|..++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456777889999999999999999998864
No 34
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=34.22 E-value=5.5e+02 Score=28.51 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=62.6
Q ss_pred HHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHHHHHHhhhhhhHHHH
Q 001147 93 QLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFY 172 (1140)
Q Consensus 93 ~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k~~~~f~~~~L~~if 172 (1140)
.-+++.|.+. .|+-++.=+-.++-. .++.....||.+|..++....... -..+++.++..+|
T Consensus 106 ~~~~~~~i~~---~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~--------------~~~L~~tGl~~v~ 167 (282)
T PF10521_consen 106 SQLDRPWISQ---HWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAE--------------WDILRRTGLFSVF 167 (282)
T ss_pred hcCCcchHHH---hhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhh--------------hHHHHHcChHHHH
Confidence 3456656552 455566666666642 257888999999999998776651 3346677888888
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcc
Q 001147 173 CWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN 211 (1140)
Q Consensus 173 ~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls 211 (1140)
.-+ |..+....|+.+...+...++..+..++..++.
T Consensus 168 ~~a---l~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 168 EDA---LFPCLYYLPPITPEDESLELLQAAYPALLSLLK 203 (282)
T ss_pred HHH---HHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 854 444444444444334456677777777777654
No 35
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=30.41 E-value=1.8e+03 Score=31.51 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHHHHhhccCccCHHH-------HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCc
Q 001147 34 VANARFQAAAAIRDAAMREWSFLTADE-------KKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD 106 (1140)
Q Consensus 34 ~~~~~f~a~~~L~~~i~~~W~~l~~~~-------k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~ 106 (1140)
|..+-+||+..|++...+- ++.++ +.-||-|. +++++. ...-|+..+++++..|+.- ..+.-...
T Consensus 1150 n~~va~fAidsLrQLs~kf---le~eEL~~f~FQkefLkPfe--~im~~s--~~~eVrE~ILeCv~qmI~s-~~~nIkSG 1221 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKF---LEREELANYNFQNEFMKPFV--IVMRKS--NAVEIRELIIRCVSQMVLS-RVNNVKSG 1221 (1780)
T ss_pred chhHHHHHHHHHHHHHHHh---cchhhhhchhHHHHHHHHHH--HHHHhc--CchHHHHHHHHHHHHHHHH-HHhhhhcC
Confidence 5677899999999987764 44443 44444443 344543 3456888888888877732 12222335
Q ss_pred hhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCC
Q 001147 107 KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 143 (1140)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~ 143 (1140)
|.++|.=+...+.. ..+.....|...+..++.||-.
T Consensus 1222 WktIF~VLs~aa~d-~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1222 WKSMFMVFTTAAYD-DHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred cHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHhhhh
Confidence 67777666555442 3466778888888888888754
No 36
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.16 E-value=2e+02 Score=29.12 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=62.3
Q ss_pred hhhhHHHHHHHHHHHhhC-hhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 001147 946 PKLCHDYFSLLSHLLEVY-PETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA 1024 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~-~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 1024 (1140)
|+-|-.=..|+..+++.+ ++.+.+--..-+..++..++. .....+.+.++.++..+..+... .+.+..+..
T Consensus 39 ~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~~~~~-----~p~l~Rei~ 110 (165)
T PF08167_consen 39 AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFDLIRG-----KPTLTREIA 110 (165)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhcC-----CCchHHHHh
Confidence 333444445566666666 444433333333444444443 45567777888898888866532 222222222
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHH
Q 001147 1025 GINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSEL 1084 (1140)
Q Consensus 1025 ~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~l 1084 (1140)
+ ..+..++..+++. .++ ......+-++|..++..+|..|..+..++
T Consensus 111 t----------p~l~~~i~~ll~l--~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 111 T----------PNLPKFIQSLLQL--LQD--SSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred h----------ccHHHHHHHHHHH--Hhc--cccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 1 2255566666653 121 23334566777777777777666555544
No 37
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=25.76 E-value=1.4e+03 Score=31.43 Aligned_cols=152 Identities=19% Similarity=0.237 Sum_probs=97.7
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhc
Q 001147 946 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAG 1025 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1025 (1140)
|++.+.+ +.+.+.+-.....+|..++..++++-..++...+.++.....+-|-.|...+. +++..|.
T Consensus 839 ~~l~~~~----~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~-------~g~~~H~-- 905 (2196)
T KOG0368|consen 839 PNLDKSL----ESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYS-------GGLEAHA-- 905 (2196)
T ss_pred hhHHHHH----HHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhc-------ccHHHHH--
Confidence 4555544 33344444444588999999999999999999899999888888877776552 2444432
Q ss_pred cCCCCCCCchhHHHHHHHHHHHH-HHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Q 001147 1026 INNSNGNPEEGVLSRFLRSLLQL-LLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSL 1104 (1140)
Q Consensus 1026 ~~~~~~~~~~~ll~~ll~~l~~~-~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~af~~L 1104 (1140)
..++..+|+--++. -+|+..+. -..+.+..|=--+...+.+.+..+++.+. -..+..|.-+.-..
T Consensus 906 ---------~~v~~~Lle~Yl~VEk~F~~~~~----~~e~~i~~lr~~~~~d~~kVv~~i~SHs~-i~~KN~Lv~~ll~~ 971 (2196)
T KOG0368|consen 906 ---------KEVVHDLLEEYLEVEKLFNGRDS----HYEDVILRLREENKKDLKKVVDIILSHSQ-IKSKNKLVLALLDQ 971 (2196)
T ss_pred ---------HHHHHHHHHHHHHHHHHhccCcc----hHHHHHHHHHHhhhhHHHHHHHHHHcchh-hhhhhHHHHHHHHH
Confidence 35666666665554 35554433 23456666544455557777878777653 34556666666555
Q ss_pred hcCCCCCCCcChhhHHHHHHHHHHHH
Q 001147 1105 TSSNQLSSTLDRVNYQRFRKNLTNFL 1130 (1140)
Q Consensus 1105 ~~~~~~~~~~~~~nr~~F~~~l~~F~ 1130 (1140)
+.+ .+.+.-+.|+..|+++.
T Consensus 972 l~~------~s~~~~~~f~~iL~~l~ 991 (2196)
T KOG0368|consen 972 LKP------PSSKVSDEFRDILRKLT 991 (2196)
T ss_pred hcC------CCCCCCHHHHHHHHHHH
Confidence 443 24577788888888775
No 38
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.64 E-value=5.7e+02 Score=26.39 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHh-ccccCCCCchhHHHHHH-----------HHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCC
Q 001147 83 VQAKISSVAAQLMKR-GWLDFTSSDKEAFFSQV-----------HQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMG 150 (1140)
Q Consensus 83 v~~~l~~~~a~i~K~-~w~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~ 150 (1140)
||-..+.++..++|. +--...+ .|..|+.+- ...+....++..+..++..|.++.+- +.. .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~-yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~-----~ 74 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFG-YWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKP-----F 74 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHh-hHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHH-----H
Q ss_pred CcHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccc
Q 001147 151 LPREFHEQCRI-SLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFS 229 (1140)
Q Consensus 151 ~~~~~h~k~~~-~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~ 229 (1140)
+......+-+. +|- .|..-....+.-+...+-..+..+. +..++.++++|+....+=-+-....
T Consensus 75 L~~Ae~~~~~~~sFt--slS~tLa~~i~~lH~~Ll~~L~~E~---~~~~l~q~lK~la~Lv~~tPY~rL~---------- 139 (182)
T PF13251_consen 75 LAQAEESKGPSGSFT--SLSSTLASMIMELHRGLLLALQAEK---SPPVLTQLLKCLAVLVQATPYHRLP---------- 139 (182)
T ss_pred HHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHccCChhhcC----------
Q ss_pred ccccccccCCCccccccccCCccchHHhhccchHHHHH-HHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCc
Q 001147 230 AGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 306 (1140)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf-~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~ 306 (1140)
++++.-++ .+...+++. |++....++.|+.-+.|.....
T Consensus 140 ------------------------------~~ll~~~v~~v~~~l~~~--------d~~v~v~~l~~~~~l~s~~~~~ 179 (182)
T PF13251_consen 140 ------------------------------PGLLTEVVTQVRPLLRHR--------DPNVRVAALSCLGALLSVQPPL 179 (182)
T ss_pred ------------------------------HhHHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCCCC
No 39
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=25.31 E-value=1e+02 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 001147 974 AFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYH 1008 (1140)
Q Consensus 974 ~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~ 1008 (1140)
.+..++-.+.-||+|..++|...++.+|+-+..++
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~ 42 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHA 42 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHC
Confidence 46678888999999999999999999999999887
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=24.56 E-value=2.8e+02 Score=25.37 Aligned_cols=108 Identities=13% Similarity=-0.029 Sum_probs=61.2
Q ss_pred CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHH-----HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001147 20 QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKK-----SLIGFCLCFVMQHASSPEGYVQAKISSVAAQL 94 (1140)
Q Consensus 20 ~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~-----~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i 94 (1140)
..++....+|..+ +++++..|+.+|.+..... ++.+. +.-..+.+++.. ..+-++...+.++..+
T Consensus 7 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l 76 (120)
T cd00020 7 GGLPALVSLLSSS-DENVQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNL 76 (120)
T ss_pred CChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 3566666777654 4789999999999986541 22222 333455554422 2467888888888888
Q ss_pred hHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHH
Q 001147 95 MKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 138 (1140)
Q Consensus 95 ~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv 138 (1140)
...+...........++..+.+.+.. .+......++.+|..+.
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 75432110000011245555555553 24555666666666554
No 41
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=21.45 E-value=1.4e+03 Score=27.28 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHh
Q 001147 824 ESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNL 903 (1140)
Q Consensus 824 ~~~v~~~iL~l~~e~v~~~~~~l~~~~~~~Lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~ 903 (1140)
+......+|.|+.++++....++..+....+-+.+..+ ..+ ...+ .++..+++++.-+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~i---C~~----------------Ts~~---~di~~~L~vldai 204 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTI---CKS----------------TSSE---DDIEACLSVLDAI 204 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH---Hhc----------------cCcH---HHHHHHHHHHHHH
Confidence 44556889999999999887877765443333333332 111 0111 3455688888888
Q ss_pred hcCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHH-
Q 001147 904 CSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTL- 982 (1140)
Q Consensus 904 l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl- 982 (1140)
++-+.++-+ ++. .+...|+.+... .++++.-.+.++.+++.|... ..+..+++.+
T Consensus 205 i~y~~iP~~-------sl~---~~i~vLCsi~~~--------~~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~ 260 (464)
T PF11864_consen 205 ITYGDIPSE-------SLS---PCIEVLCSIVNS--------VSLCKPSWRTMRNLLKSHLGH------SAIRTLCDILR 260 (464)
T ss_pred HHcCcCChH-------HHH---HHHHHHhhHhcc--------cccchhHHHHHHHHHcCccHH------HHHHHHHHHHc
Confidence 775554311 122 222333443333 278888888999988765543 3345555555
Q ss_pred -HhhccCCchHHHHHHHHHHHHHH
Q 001147 983 -DFGLHHQDSEIVDMCLRALRALA 1005 (1140)
Q Consensus 983 -~~Gl~~~d~~I~~~~l~~l~~l~ 1005 (1140)
...=...+..+.+.+..++..+.
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLL 284 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHH
Confidence 22222456777777877777665
No 42
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=20.96 E-value=1.9e+02 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhHh
Q 001147 59 DEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKR 97 (1140)
Q Consensus 59 ~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~ 97 (1140)
.+.+-+|+-+++|+..+. +-.+.+++.+++.++|.
T Consensus 3 ~~~eYLKNvl~~fl~~~~----~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESRE----PSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS-------HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHCC
Confidence 456678999999997653 56788899999999974
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=20.72 E-value=4.1e+02 Score=32.33 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=61.5
Q ss_pred CCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHH
Q 001147 32 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFF 111 (1140)
Q Consensus 32 S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~ 111 (1140)
++|++++-.|+.+|-... +++-...+-..+.+.+. +..++||.+.+.++..+.|.. ++. ....++
T Consensus 90 ~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~----~~~~~VRk~A~~~l~~i~~~~-p~~---~~~~~~ 154 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS----DPSPYVRKKAALALLKIYRKD-PDL---VEDELI 154 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH----SSSHHHHHHHHHHHHHHHHHC-HCC---HHGGHH
T ss_pred CCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc----CCchHHHHHHHHHHHHHhccC-HHH---HHHHHH
Confidence 678888888888888864 33444445555555442 235699999999999999873 331 111278
Q ss_pred HHHHHHhcccCChhhHHHHHHHHHHH
Q 001147 112 SQVHQAVLGIHGVDTQFIGINFLESL 137 (1140)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~gl~lL~~l 137 (1140)
+.+.+++.. .++....-++.++.++
T Consensus 155 ~~l~~lL~d-~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 155 PKLKQLLSD-KDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHTTH-SSHHHHHHHHHHHHHH
T ss_pred HHHhhhccC-CcchhHHHHHHHHHHH
Confidence 888888864 3567777788777777
No 44
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.71 E-value=1.2e+03 Score=26.10 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred HHHhhccCC--CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001147 11 TILGLCQSP--QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKIS 88 (1140)
Q Consensus 11 ~l~~f~~~~--~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~ 88 (1140)
.+..+.+.+ ++|.....+|+++ +.+++--|+..|...+...=.. ......++-.++++++.+.....+.-+..-.+
T Consensus 94 ~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av 171 (312)
T PF03224_consen 94 LFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAV 171 (312)
T ss_dssp HHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHH
T ss_pred HHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHH
Confidence 344554433 3788888866655 8899999999999998775221 11111355588888887643222333445566
Q ss_pred HHHHHHhH
Q 001147 89 SVAAQLMK 96 (1140)
Q Consensus 89 ~~~a~i~K 96 (1140)
++++.++|
T Consensus 172 ~~L~~LL~ 179 (312)
T PF03224_consen 172 QCLQNLLR 179 (312)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 77777774
No 45
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=20.17 E-value=1.1e+03 Score=25.17 Aligned_cols=194 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhcCCCcccCCccchhhhhchhHHHhhhhhccc----cccccccccchhhhHHHHHHHHHHHhhChhh
Q 001147 891 KDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVT----PLMSGDLLKYPKLCHDYFSLLSHLLEVYPET 966 (1140)
Q Consensus 891 k~l~~ll~lL~~~l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~l----Pli~~dll~yPkl~~~ff~Ll~~l~e~~~~~ 966 (1140)
+.+..+++.+..++...=.-|. .-..+.++..+..+. +. .+....+++-..-.+++..+...|+..
T Consensus 3 ~~~~~~l~~l~~ll~~~~~~~s--------q~~ie~~l~~~~~~~~~~~~~--~~~~~~~~if~~~~~ll~~il~~hr~~ 72 (223)
T PF10441_consen 3 KSILLILEILKQLLSSKPWLFS--------QYNIEQILSILSTLFSSLRNT--LSADSSPSIFISLCRLLSSILRHHRFK 72 (223)
T ss_pred hHHHHHHHHHHHHHhcCchhcc--------chhHHHHHHHHHHHHcccccc--cccchhHHHHHHHHHHHHHHHHHhHHH
Q ss_pred hh-cCCH--HHHHHHHHHHH-------hhccCCchHH--HHHHHHHHHHHHHH-HHhhhcCCCccchhhhhccCCCCCCC
Q 001147 967 VA-QLST--EAFAHVLGTLD-------FGLHHQDSEI--VDMCLRALRALASY-HYKETGAGKVGLAAQAAGINNSNGNP 1033 (1140)
Q Consensus 967 l~-~l~~--~~f~~l~~sl~-------~Gl~~~d~~I--~~~~l~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1140)
+. ..|. ..+..++.++. .+-.....+. ++.+...|.++++. .......+...+...........
T Consensus 73 l~~r~hll~~~l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~--- 149 (223)
T PF10441_consen 73 LSGRFHLLLSVLQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSL--- 149 (223)
T ss_pred HcCCChHHHHHHHHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHH---
Q ss_pred chhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 001147 1034 EEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLI-LCEPRLYQRLGSELIERQANPPFKSRLANALQS 1103 (1140)
Q Consensus 1034 ~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li-~~~~~~f~~~~~~li~~q~~~~~~~~l~~af~~ 1103 (1140)
....+.+|..-....+...+..+.-..+-..+|+++ .|.+.. .++++..+ |+.-|+-+++-++.
T Consensus 150 -~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e-~~~l~a~L----d~~gr~~fk~Ly~d 214 (223)
T PF10441_consen 150 -RKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHE-LQQLNASL----DASGRAVFKSLYKD 214 (223)
T ss_pred -HhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHc----ChHHHHHHHHHHHH
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=20.07 E-value=9.3e+02 Score=24.48 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q 001147 946 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALAS 1006 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~ 1006 (1140)
|.++..-.-.+.-++-.||.. +...+..+...|++.++.|-+.++..|..|..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~--------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~ 54 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL--------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL 54 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH--------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 556666666666666666543 34556667778889999999999999988873
Done!