Query 001147
Match_columns 1140
No_of_seqs 144 out of 471
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 5.8E-63 2E-67 630.2 64.7 915 3-1137 43-1028(1073)
2 4hat_C Exportin-1; heat repeat 100.0 9.9E-58 3.4E-62 586.8 65.2 921 4-1136 32-1007(1023)
3 3m1i_C Exportin-1; heat repeat 100.0 3.8E-40 1.3E-44 433.8 75.7 911 4-1136 32-1007(1049)
4 2x19_B Importin-13; nuclear tr 100.0 1.1E-39 3.9E-44 427.6 67.8 887 3-1137 40-955 (963)
5 2x1g_F Cadmus; transport prote 100.0 3.4E-32 1.2E-36 356.6 69.6 910 2-1138 21-968 (971)
6 3ibv_A Exportin-T; karyopherin 100.0 2.7E-30 9.2E-35 332.5 72.6 903 3-1135 23-977 (980)
7 3a6p_A Exportin-5; exportin-5, 99.9 2.4E-23 8.1E-28 275.0 62.1 606 4-761 29-682 (1204)
8 1w9c_A CRM1 protein, exportin 99.9 4.6E-22 1.6E-26 215.9 16.1 285 811-1136 5-319 (321)
9 4fdd_A Transportin-1; heat rep 99.8 4.1E-14 1.4E-18 182.5 58.2 132 3-143 28-161 (852)
10 1wa5_C Importin alpha RE-expor 99.5 4.7E-09 1.6E-13 136.8 65.0 127 8-143 23-156 (960)
11 2bpt_A Importin beta-1 subunit 99.4 3.1E-08 1.1E-12 127.6 58.5 177 3-212 20-211 (861)
12 1qgr_A Protein (importin beta 99.1 1.9E-05 6.6E-10 101.6 58.9 132 3-142 16-162 (876)
13 1ibr_B P95, importin beta-1 su 98.6 1.2E-05 4.2E-10 94.9 31.2 132 3-142 16-162 (462)
14 4fdd_A Transportin-1; heat rep 91.4 37 0.0013 42.6 34.2 380 655-1107 398-785 (852)
15 1u6g_C TIP120 protein, CAND1; 71.0 1.2E+02 0.0041 39.7 20.9 132 3-143 21-167 (1230)
16 2bpt_A Importin beta-1 subunit 69.5 2.2E+02 0.0074 35.2 31.3 58 947-1008 613-670 (861)
17 4db6_A Armadillo repeat protei 50.2 1.3E+02 0.0044 29.6 12.3 105 18-138 10-124 (210)
18 4hxt_A De novo protein OR329; 49.4 85 0.0029 31.8 11.0 122 5-138 19-156 (252)
19 4hxt_A De novo protein OR329; 40.4 1.6E+02 0.0054 29.6 11.4 106 22-139 4-115 (252)
20 2qk2_A LP04448P; mini spindles 39.0 2.6E+02 0.0089 28.2 12.8 131 946-1106 29-162 (242)
21 4db8_A Armadillo-repeat protei 37.1 2.2E+02 0.0076 28.7 11.9 110 17-138 9-124 (252)
22 1wa5_C Importin alpha RE-expor 33.6 4.4E+02 0.015 33.2 16.1 68 932-1006 458-525 (960)
23 4db8_A Armadillo-repeat protei 27.5 1.3E+02 0.0043 30.7 7.9 112 20-138 54-166 (252)
24 3ibv_A Exportin-T; karyopherin 26.7 1E+03 0.036 29.8 18.1 62 944-1010 507-570 (980)
25 2qk1_A Protein STU2; STU2P, XM 23.4 6E+02 0.021 25.9 13.2 137 946-1106 30-175 (249)
26 3m1i_C Exportin-1; heat repeat 23.0 1.1E+03 0.038 29.7 17.2 142 946-1104 311-480 (1049)
27 4ffb_C Protein STU2; tubulin f 20.3 2.8E+02 0.0095 28.9 9.0 108 977-1106 139-246 (278)
28 1qgr_A Protein (importin beta 20.1 1.2E+03 0.041 28.2 26.8 59 946-1008 622-681 (876)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=5.8e-63 Score=630.22 Aligned_cols=915 Identities=14% Similarity=0.167 Sum_probs=659.5
Q ss_pred CChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCC----
Q 001147 3 VNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASS---- 78 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~---- 78 (1140)
++|++|+++|.+|+++|++|..|..||+.|++++++|||+++|++.|.++|..+|+++|.+||+++++|+.+...+
T Consensus 43 ~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~ 122 (1073)
T 3gjx_A 43 AQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCV 122 (1073)
T ss_dssp HHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGG
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCcccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999874322
Q ss_pred -ChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHH
Q 001147 79 -PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHE 157 (1140)
Q Consensus 79 -~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~ 157 (1140)
.++.+++|+++++|.|+|++|++ .|++++.++.+.+.+ ++.++.+++.+|..+.+|....+++ .++..+..
T Consensus 123 e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~d~~~~--~l~~~r~~ 194 (1073)
T 3gjx_A 123 EKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT--SESLCQNNMVILKLLSEEVFDFSSG--QITQVKAK 194 (1073)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHTTSHHH--HBCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHhcccc--cccHHHHH
Confidence 24677899999999999999998 689999999999874 7788999999999999996543111 24556677
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccccccccc
Q 001147 158 QCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETS 237 (1140)
Q Consensus 158 k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~ 237 (1140)
+.+..+++. ++.|+.++..+|++. .+..++..+|+++..+++|...+.
T Consensus 195 ~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~-------------------- 242 (1073)
T 3gjx_A 195 HLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY-------------------- 242 (1073)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH--------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH--------------------
Confidence 888889976 999999887777532 245788899999999999998765
Q ss_pred CCCccccccccCCccchHHhhccchHHHHH-HHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHH
Q 001147 238 SSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQE 316 (1140)
Q Consensus 238 ~~~~~~~~~~~~p~~W~~~l~~~~~l~llf-~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~ 316 (1140)
+.+++++++++ .+ +. +++++..|++||.++.+.+.+ + ....-.
T Consensus 243 -------------------i~~~~ll~~L~~~~---L~----------~~~~r~aA~dcL~eIv~k~~~---~-~~~~~~ 286 (1073)
T 3gjx_A 243 -------------------IFETKLISTLIYKF---LN----------VPMFRNVSLKCLTEIAGVSVS---Q-YEEQFE 286 (1073)
T ss_dssp -------------------HHSSSHHHHHHHHT---SS----------SHHHHHHHHHHHHHHHHSCSG---G-GHHHHH
T ss_pred -------------------hccchHHHHHHHHh---cC----------ChHHHHHHHHHHHHHHhcccc---c-hHHHHH
Confidence 66778888774 32 21 367999999999999987522 1 111223
Q ss_pred HHHHHHHHhhhhhcCChhHHHHHhhhCCCh--hhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHHHH
Q 001147 317 HHLLQLLSGILEWVDPPDVVAQAIESGKSE--SEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKV 394 (1140)
Q Consensus 317 ~yl~~~l~~~~~~l~~~~~~~~~~~~g~~~--~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~ 394 (1140)
..+..++..+..++.....+.+++..|.++ +.+..+|+++..+..+|. .++..... +...+.. ..+.+-.
T Consensus 287 ~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~--~~~~l~~-~l~~ll~ 358 (1073)
T 3gjx_A 287 TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLN--LREALME-ALHYMLL 358 (1073)
T ss_dssp HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGG--GHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCcc--chHHHHH-HHHHHHH
Confidence 455566666667776655677777766432 445567888877776653 22211111 0111111 1111111
Q ss_pred HhhcccccccchHHHHHHHHHHHHHhhhccc----ccCCCC---------CCChhhhhhHHHHHH---HHHhcccccccc
Q 001147 395 LMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNV---------VLPLEVRNAAASLFA---LIVESELKVASA 458 (1140)
Q Consensus 395 ~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~----~~~~~~---------~~~~~~~~~~~~i~~---~yi~srl~~~~~ 458 (1140)
. +..++ .|.+++++++|+.|...+- +..+.. ..+.. .+.-..+|. ..+.+||++|++
T Consensus 359 ~---s~~~d---~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~e 431 (1073)
T 3gjx_A 359 V---SEVEE---TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEE 431 (1073)
T ss_dssp H---TTCSC---HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCC
T ss_pred H---hCCCc---HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1 11223 7999999999999987651 100000 01211 111123443 336799999998
Q ss_pred cccCCCCccch--h----hccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHH
Q 001147 459 SAMDDNGEFNY--L----QASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLI 532 (1140)
Q Consensus 459 ~~~~e~d~~e~--~----~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i 532 (1140)
+..+|+|++|. + -++...|+.+.+++.+++++++.++...+.+.+.+.. +++.|+|..+|.++|+++.
T Consensus 432 v~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~------~~~~~sW~~lea~~~aiga 505 (1073)
T 3gjx_A 432 VLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQV------NGTEWSWKNLNTLCWAIGS 505 (1073)
T ss_dssp EEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------TSCCCCHHHHHHHHHHHHH
T ss_pred ccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------cCCCCCHHHHhHHHHHHHH
Confidence 76555555553 1 2356799999999999999999999999888887642 3456778999999999985
Q ss_pred H-hhHhccCCCCCccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhc
Q 001147 533 T-GHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYL 611 (1140)
Q Consensus 533 ~-g~~l~~~~~ge~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL 611 (1140)
+ |++. .+.+...++.++..|+++++...+++.+ +.++.+++|.+|||++ |+
T Consensus 506 Iag~~~----------------------~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k-----~~vas~i~~vlgrY~~-wl 557 (1073)
T 3gjx_A 506 ISGAMH----------------------EEDEKRFLVTVIKDLLGLCEQKRGKDNK-----AIIASNIMYIVGQYPR-FL 557 (1073)
T ss_dssp TTTSSC----------------------HHHHHHHHHHHHHHHHHHHHHSCSHHHH-----HHHHHHHHHHHHHCHH-HH
T ss_pred HHCcCC----------------------cccccchHHHHHHHHhcccccccccchh-----HHHHHHHHHHHhhhHH-HH
Confidence 4 5442 0112234678899999999876655554 3488999999999986 88
Q ss_pred CccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCC-----chhHHHHHHHHHH
Q 001147 612 MPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPG-----EKDLQELTCNQLL 684 (1140)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~f~~~~~g--~~~l~~~l~~i~~~l~~~~~-----e~~vi~~~~~~LL 684 (1140)
..+ +++++++...+++++++.++| .+++++|.+.+..|-.++.. ..+.+
T Consensus 558 ----~~h------------~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i-------- 613 (1073)
T 3gjx_A 558 ----RAH------------WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFI-------- 613 (1073)
T ss_dssp ----HHC------------HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHH--------
T ss_pred ----HhC------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHH--------
Confidence 444 677889999999999988888 68899999999988776522 22333
Q ss_pred HHHhhccccchhhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhC
Q 001147 685 HALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSG 764 (1140)
Q Consensus 685 ~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~ 764 (1140)
..+++.+.. ....++++....||+++|.+++..++...+..+++.+|.|+.+.|+++++
T Consensus 614 -------------------~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~ 672 (1073)
T 3gjx_A 614 -------------------DEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQ 672 (1073)
T ss_dssp -------------------HHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333211 13346788888999999999998777666788999999999999999996
Q ss_pred CCc-ccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc
Q 001147 765 KND-LKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQ 842 (1140)
Q Consensus 765 ~~~-~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~ 842 (1140)
+.. ..+...+++.+..+..+++++..+|.+.+.. |.++ .+++++++++|..+++.+. +.+...
T Consensus 673 ~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~--------f~~~~~~i~~~~l~~y~~~s~~i~-------~~v~~~ 737 (1073)
T 3gjx_A 673 QATKNVDILKDPETVKQLGSILKTNVRACKAVGHP--------FVIQLGRIYLDMLNVYKCLSENIS-------AAIQAN 737 (1073)
T ss_dssp HHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhC
Confidence 432 2235567777889999999999999999876 3333 6677889999988877653 455444
Q ss_pred cccccc-c---hhhhHHHHHHHHHHHhhhcccC--------------ccccccccccccchhhhhhhhHHHHHHHHHHhh
Q 001147 843 ISYLEV-Q---ETNIVIDFCTRLLQLYSSHNIG--------------KMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLC 904 (1140)
Q Consensus 843 ~~~l~~-~---~~~~Lf~~~~~ll~~y~~~~~~--------------~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l 904 (1140)
+..... + ..+.+.+++++++++|...... ..+.+|+...+...+.+.+..+..+++-+.+.+
T Consensus 738 g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~ 817 (1073)
T 3gjx_A 738 GEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI 817 (1073)
T ss_dssp CGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGT
T ss_pred CchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhc
Confidence 433322 1 2477889999999999875421 113567766777788888887777777776655
Q ss_pred cCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHh
Q 001147 905 SKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDF 984 (1140)
Q Consensus 905 ~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~ 984 (1140)
.++. ..+.+ .-+++++.||++|+.+||+++..||+|+..+++.||..+.++|++.|+.+++|+.|
T Consensus 818 ~~~~------------~~il~---~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~w 882 (1073)
T 3gjx_A 818 TAEI------------PQIFD---AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIW 882 (1073)
T ss_dssp GGGH------------HHHHH---HHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHH
T ss_pred chhH------------HHHHH---HHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Confidence 5432 22333 55699999999999999999999999999999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchh----------hhhc-cCCCCC-CCchhHHHHHHHHHHHHHHhc
Q 001147 985 GLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAA----------QAAG-INNSNG-NPEEGVLSRFLRSLLQLLLFE 1052 (1140)
Q Consensus 985 Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~ 1052 (1140)
|++|..++|++.+++++.++...+.+.......++.. .++| ..|.++ ..|..++.+++.++.+..+..
T Consensus 883 a~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~ 962 (1073)
T 3gjx_A 883 AFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKIST 962 (1073)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSC
T ss_pred HcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccc
Confidence 9999999999999999988887654311111111111 1234 555543 344555555555554432222
Q ss_pred cCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHH
Q 001147 1053 DYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLV 1131 (1140)
Q Consensus 1053 ~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~ 1131 (1140)
+.... .+ -.|+++.++|+.+++.+. | ...++++..+...|++. .++..+|+.+++||++
T Consensus 963 ~l~~~------~~-----~~n~~~~~~~~~~~l~~~fp-~~~~~qi~~fv~~l~~~--------~~d~~~f~~~lrDFli 1022 (1073)
T 3gjx_A 963 PLNPG------NP-----VNNQMFIQDYVANLLKSAFP-HLQDAQVKLFVTGLFSL--------NQDIPAFKEHLRDFLV 1022 (1073)
T ss_dssp SSSCT------TT-----TCHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHH
T ss_pred ccccc------CC-----CccHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHH
Confidence 22110 00 047889999999988655 6 37789999999999873 4688999999999999
Q ss_pred Hchhcc
Q 001147 1132 EVRGFL 1137 (1140)
Q Consensus 1132 ~vr~~l 1137 (1140)
++|+|=
T Consensus 1023 ~~ke~~ 1028 (1073)
T 3gjx_A 1023 QIKEFA 1028 (1073)
T ss_dssp HHTSCC
T ss_pred HHHHHc
Confidence 999873
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=9.9e-58 Score=586.85 Aligned_cols=921 Identities=12% Similarity=0.136 Sum_probs=638.9
Q ss_pred ChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCC----
Q 001147 4 NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSP---- 79 (1140)
Q Consensus 4 ~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~---- 79 (1140)
.|++|+++|.+|+++|++|..|..||+.|++++++|+|+++|++.|.++|..+|+++|.+||+++++++.+...+.
T Consensus 32 ~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~ 111 (1023)
T 4hat_C 32 QQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFK 111 (1023)
T ss_dssp HHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998754222
Q ss_pred -hhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHH
Q 001147 80 -EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQ 158 (1140)
Q Consensus 80 -~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k 158 (1140)
++++++|+++++|.|+|++|++ .|++++.++.+.+.+ ++.++..++.+|..+.+|..... ...++..++++
T Consensus 112 ~~~~i~nKLa~~la~I~~~~~p~----~Wp~~l~dL~~~l~~--~~~~~~~~L~iL~~L~EEV~~~~--~~~l~~~r~~~ 183 (1023)
T 4hat_C 112 TQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSSS--SVNVCENNMIVLKLLSEEVFDFS--AEQMTQAKALH 183 (1023)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHTSC--TTTSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhChh----hchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHhh--hccchHHHHHH
Confidence 5899999999999999999998 699999999999974 67788889999999888853311 12456777888
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccC
Q 001147 159 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 238 (1140)
Q Consensus 159 ~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1140)
.+..+++. ++.||.++..+|+.. .+..++..+|+++..+++|.+.+.
T Consensus 184 lk~~l~~~-~~~I~~ll~~iL~~~-----------~~~~l~~~~L~~l~s~l~WI~i~~--------------------- 230 (1023)
T 4hat_C 184 LKNSMSKE-FEQIFKLCFQVLEQG-----------ASSSLIVATLESLLRYLHWIPYRY--------------------- 230 (1023)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHC-----------SSCHHHHHHHHHHHHHTTTSCTHH---------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHHHhCCHHH---------------------
Confidence 88899986 899999988887641 134678899999999999988765
Q ss_pred CCccccccccCCccchHHhhccchHHHHH-HHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCC--ChhhH
Q 001147 239 SKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSD--NGKMQ 315 (1140)
Q Consensus 239 ~~~~~~~~~~~p~~W~~~l~~~~~l~llf-~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~--~~~~r 315 (1140)
+.++++++++| .+.. +++++..|++||.++.+.+.+ ++. .+..-
T Consensus 231 ------------------i~~~~ll~~l~~~~L~-------------~~~~r~~A~ecL~eIv~~~~~--~~~~~~~~~l 277 (1023)
T 4hat_C 231 ------------------IYETNILELLSTKFMT-------------SPDTRAITLKCLTEVSNLKIP--QDNDLIKRQT 277 (1023)
T ss_dssp ------------------HHSSSHHHHHHTHHHH-------------SHHHHHHHHHHHHHHHTSCCC--SSCHHHHHHH
T ss_pred ------------------hcchhHHHHHHHHHcC-------------CHHHHHHHHHHHHHHHccccC--CchHHHHHHH
Confidence 66678999998 5432 367999999999999985521 111 10111
Q ss_pred HHHHHHHHHhh-hhhcCChhHHHHHhhhCCC--hhhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHH
Q 001147 316 EHHLLQLLSGI-LEWVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVV 392 (1140)
Q Consensus 316 ~~yl~~~l~~~-~~~l~~~~~~~~~~~~g~~--~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~ 392 (1140)
...+..++..+ ..+++....+..++..|.+ ++.+..+|+++..+...|. .++..... +...+.. ..+.+
T Consensus 278 ~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~-----~li~~~~~--~~~~l~~-~l~~L 349 (1023)
T 4hat_C 278 VLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR-----ALLESDES--LRELLLN-AHQYL 349 (1023)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG-----GGGTSCGG--GHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----HHHhCCcc--hhHHHHH-HHHHH
Confidence 22333334433 3344433445555655542 2445568888888877654 22221101 1111111 11121
Q ss_pred HHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCCccch---
Q 001147 393 KVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNY--- 469 (1140)
Q Consensus 393 ~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d~~e~--- 469 (1140)
-.. ...++ .+.+.+++++|..+.+++-. +............++.. .+..||++|+++...|+|++|-
T Consensus 350 l~~---~~~~d---~ei~~~tl~FW~~L~~~l~~---e~~~~~~~~~~~~~L~~-vli~km~~P~e~~ive~d~~~~~~e 419 (1023)
T 4hat_C 350 IQL---SKIEE---RELFKTTLDYWHNLVADLFY---EPLKKHIYEEICSQLRL-VIIENMVRPEEVLVVENDEGEIVRE 419 (1023)
T ss_dssp HHH---TTSSC---HHHHHHHHHHHHHHHHHHTT---STTTGGGGHHHHHHHHH-HHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred HHh---hCCCc---HHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHH-HHHHhcCCCcccccCCCCCccHHHH
Confidence 111 12223 68999999999999986421 10011111111122222 3556899998654433443331
Q ss_pred ---hhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHH-HhhHhccCCCCCc
Q 001147 470 ---LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLI-TGHVLADEGEGEI 545 (1140)
Q Consensus 470 ---~~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i-~g~~l~~~~~ge~ 545 (1140)
..|+.+.|+..++++.+++++.+.++.+.+.+.+.+.. .++.++|...|-.+|+++. +|++.
T Consensus 420 ~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l------~~~~~~W~~~EA~~~a~gaIa~~~~-------- 485 (1023)
T 4hat_C 420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQI------DGSEWSWHNINTLSWAIGSISGTMS-------- 485 (1023)
T ss_dssp SSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------SSTTCCHHHHHHHHHHHHHTTTSSC--------
T ss_pred hccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHcCCC--------
Confidence 23567899999999999999999999999998887652 2334557778888888763 33331
Q ss_pred cCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcC
Q 001147 546 PVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLC 625 (1140)
Q Consensus 546 ~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~ 625 (1140)
.+.....+..++..++++++...+++. .+++..+++|.+|||++ |+. .+
T Consensus 486 --------------~~~e~~~l~~vi~~Ll~l~~~~~~~d~-----k~~v~~t~~~~lGry~~-wl~----~~------- 534 (1023)
T 4hat_C 486 --------------EDTEKRFVVTVIKDLLDLCVKKRGKDN-----KAVVASDIMYVVGQYPR-FLK----AH------- 534 (1023)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHCCSHHH-----HHHHHHHHHHHHHTCHH-HHH----HC-------
T ss_pred --------------chhHHHHHHHHHHHHHHhhhccccCcc-----hHHHHHHHHHHHHHHHH-HHh----cc-------
Confidence 001112355777788888765332222 45688999999999986 883 23
Q ss_pred CCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchH
Q 001147 626 HDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSW 703 (1140)
Q Consensus 626 ~~~~~~~~s~~v~~~l~~~f~~~~~g--~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~ 703 (1140)
+.+++++.+.+++.+++.+++ .++++.|.+.+..|-....+ .... -..|.+
T Consensus 535 -----~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~----------------~~~~------e~~p~~ 587 (1023)
T 4hat_C 535 -----WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI----------------QQPR------ESEPFI 587 (1023)
T ss_dssp -----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHS----------------CCTT------CSSCHH
T ss_pred -----HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhc----------------cCCC------CCchhH
Confidence 456778888888888776555 56777777666655432200 0000 002444
Q ss_pred HHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCc-ccccccchhHHHHHH
Q 001147 704 RELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKND-LKNVSQQPDIILLVS 782 (1140)
Q Consensus 704 ~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~-~~~~~~~~~ii~~i~ 782 (1140)
..+++.+.. ...+++++.+..+|++++.++.+.++.+.+.++++.+|.|+...|+++.++.. -..+..+++.+..+.
T Consensus 588 ~~il~~l~~--~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~ 665 (1023)
T 4hat_C 588 QTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIA 665 (1023)
T ss_dssp HHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHH
T ss_pred HHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHH
Confidence 555444321 12246777788999999999988777777888999999999999999985421 112445567788999
Q ss_pred HHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhccccccccc----hhhhHHHH
Q 001147 783 CLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQ----ETNIVIDF 857 (1140)
Q Consensus 783 ~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~~----~~~~Lf~~ 857 (1140)
.+|+++..+|.+.+.. +.|+ -+++..++++|..++..+. +.+.+.+...... ..+.+.++
T Consensus 666 ~il~~~~~v~~~lg~~--------f~~~~~~i~~~~l~~y~~~s~~i~-------~~~~~~g~~~~~~~~~r~~r~ik~~ 730 (1023)
T 4hat_C 666 NIIKTNVAVCTSMGAD--------FYPQLGHIYYNMLQLYRAVSSMIS-------AQVAAEGLIATKTPKVRGLRTIKKE 730 (1023)
T ss_dssp HHHHHHHHHHHHHGGG--------GHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHH--------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhCCchhhccHHHHHHHHHHHH
Confidence 9999999999998865 3344 5677888888988887754 5556555555431 23678899
Q ss_pred HHHHHHHhhhcccCc--------------cccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCccchhhhhch
Q 001147 858 CTRLLQLYSSHNIGK--------------MLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINI 923 (1140)
Q Consensus 858 ~~~ll~~y~~~~~~~--------------~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~~~~~d~~~~~ 923 (1140)
+++++++|....... .+.+|..+.+...+.+.+..+..+++-+...+.++ -..+
T Consensus 731 il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~------------~~~i 798 (1023)
T 4hat_C 731 ILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQG------------VILI 798 (1023)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHH------------HHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhh------------hHHH
Confidence 999999998754221 13556666666667776665555555543222111 1222
Q ss_pred hHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 001147 924 SQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRA 1003 (1140)
Q Consensus 924 ~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~ 1003 (1140)
.+ .-++++++||++|+.+||+++..||+|+..+++.||..+.++|++.|+.+++|+.||++|.+++|+..+++++.+
T Consensus 799 l~---~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ 875 (1023)
T 4hat_C 799 LQ---SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALD 875 (1023)
T ss_dssp HH---HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 23 556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc--CCCccchh----------hhhc-cCCCCC-CCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHH
Q 001147 1004 LASYHYKETG--AGKVGLAA----------QAAG-INNSNG-NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPL 1069 (1140)
Q Consensus 1004 l~~~~~~~~~--~~~~~~~~----------~~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~L 1069 (1140)
+...+.+..+ ....++.. .++| ..|.++ ..|..++.+++.++.+..+..+.... ...| -
T Consensus 876 ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~---~ 948 (1023)
T 4hat_C 876 LVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQE----AEVP---Q 948 (1023)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCT----TSSC---T
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCc----cccC---C
Confidence 9887764311 11111111 1244 556543 44556666666666654333332210 0000 0
Q ss_pred HhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhc
Q 001147 1070 ILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGF 1136 (1140)
Q Consensus 1070 i~~~~~~f~~~~~~li~~q-~~~~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~ 1136 (1140)
...|++++++|+.+++++. | ....+++..+...|++. .++..+|+.++++|++++|+|
T Consensus 949 ~~~n~~~~~~~~~~~l~~~fp-~~~~~qi~~fv~~l~~~--------~~~~~~f~~~lrdfli~~ke~ 1007 (1023)
T 4hat_C 949 GTSNQVYLSQYLANMLSNAFP-HLTSEQIASFLSALTKQ--------CKDLVVFKGTLRDFLVQIKEV 1007 (1023)
T ss_dssp TCCHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHTTSS
T ss_pred CCchHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHhHHhHhh
Confidence 1267889999999998865 5 46789999999999873 468999999999999999986
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=3.8e-40 Score=433.78 Aligned_cols=911 Identities=13% Similarity=0.168 Sum_probs=551.4
Q ss_pred ChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCC----
Q 001147 4 NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSP---- 79 (1140)
Q Consensus 4 ~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~---- 79 (1140)
.|++||++|.+|+++|+.|..|..||+++++++++|+|+.+|++.|.++|..+++++|..||+++++++.+...+.
T Consensus 32 ~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~ 111 (1049)
T 3m1i_C 32 QQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFK 111 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccch
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998754333
Q ss_pred -hhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHH
Q 001147 80 -EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQ 158 (1140)
Q Consensus 80 -~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k 158 (1140)
+++|++|+++++|.|+|++|++ .|++++.++.+.+++ ++.++..++.+|..+.+|....+.++++.....|
T Consensus 112 ~~~~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~~--~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~-- 183 (1049)
T 3m1i_C 112 TQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSSS--SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALH-- 183 (1049)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHcc--ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHH--
Confidence 3799999999999999999997 789999999999863 5666777777777777766543222444444444
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccC
Q 001147 159 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 238 (1140)
Q Consensus 159 ~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1140)
.+..|+++ +..||.++..+++.. ++..+...+|+++.++++|...+.
T Consensus 184 lk~~l~~~-~~~i~~~~~~~l~~~-----------~~~~~~~~aL~~l~~~l~wi~~~~--------------------- 230 (1049)
T 3m1i_C 184 LKNSMSKE-FEQIFKLCFQVLEQG-----------SSSSLIVATLESLLRYLHWIPYRY--------------------- 230 (1049)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH---------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhhCCHHH---------------------
Confidence 44678874 999999988877542 134688899999999999998654
Q ss_pred CCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHHHH
Q 001147 239 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHH 318 (1140)
Q Consensus 239 ~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~y 318 (1140)
+.++.+++.+|+.+.. +++++..+++||.++++.+ .+....+ -...
T Consensus 231 ------------------~~~~~ll~~l~~~~l~------------~~~~~~~a~~~L~~i~~~~---~~~~~~~-~~~~ 276 (1049)
T 3m1i_C 231 ------------------IYETNILELLSTKFMT------------SPDTRAITLKCLTEVSNLK---IPQDNDL-IKRQ 276 (1049)
T ss_dssp ------------------HHSSSHHHHHHTHHHH------------SHHHHHHHHHHHHHHHHCC---CCTTCHH-HHHH
T ss_pred ------------------HhhhhHHHHHHHHhCC------------CHhHHHHHHHHHHHHHhCC---CCcchhh-HHHH
Confidence 4457788888865553 3678999999999999864 2222100 0112
Q ss_pred HHHH----HHhhhh-hcCChhHHHHHhhhCCC--hhhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHH
Q 001147 319 LLQL----LSGILE-WVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEV 391 (1140)
Q Consensus 319 l~~~----l~~~~~-~l~~~~~~~~~~~~g~~--~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~ 391 (1140)
+..+ +..+.. ++.+...+...+..+.+ ++.+..+|+++..+...+. .++..... .-..+..+...+
T Consensus 277 ~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~-----~~~~~~~~--~~~~l~~~l~~l 349 (1049)
T 3m1i_C 277 TVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR-----ALLESDES--LRELLLNAHQYL 349 (1049)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHH-----HHHHSCGG--GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHH-----HHHcCChh--hHHHHHHHHHHH
Confidence 2233 333322 44322222223333322 2334578888877665431 12111000 011111111122
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCCccch--
Q 001147 392 VKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNY-- 469 (1140)
Q Consensus 392 ~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d~~e~-- 469 (1140)
+.. +. .. ..+....++++|..+.+.+.. .............++... +..+|..|++....+||++|+
T Consensus 350 l~~-~~--~~----d~~v~~~~lefw~~l~~~l~~---~~~~~~~~~~~l~~Lv~~-ll~~m~~~ed~~~~~dd~~e~~r 418 (1049)
T 3m1i_C 350 IQL-SK--IE----ERELFKTTLDYWHNLVADLFY---EPLKKHIYEEICSQLRLV-IIENMVRPEEVLVVENDEGEIVR 418 (1049)
T ss_dssp HHH-HT--SS----CHHHHHHHHHHHHHHHHHHHH---STTCGGGGHHHHHHHHHH-HHHTCCCCTTCCEEECTTSCEEE
T ss_pred HHH-Hc--CC----cHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHH-HHHhcCCCcceeeeeCCCCcchH
Confidence 221 11 11 256788999999999884310 001111222344555544 445787765432112222221
Q ss_pred ----hhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhhHhccCCCCCc
Q 001147 470 ----LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEI 545 (1140)
Q Consensus 470 ----~~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i~g~~l~~~~~ge~ 545 (1140)
++|++..++...+++-.+++..+.++.+.+.+.+.+..+ ++.+.|...|-..|+++ ++ ++...+
T Consensus 419 ~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~------~~~~~W~~~eaal~alg---si-a~~~~~-- 486 (1049)
T 3m1i_C 419 EFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID------GSEWSWHNINTLSWAIG---SI-SGTMSE-- 486 (1049)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT------SSSCCHHHHHHHHHHHH---HT-TTSSCH--
T ss_pred hhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHH---HH-hcccCc--
Confidence 123345677778888888899999888888888776531 22333445555555554 33 222110
Q ss_pred cCChhhHhhhhhhhhcccCch-HHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCc
Q 001147 546 PVVPNAIQTHFVDTIEAAKHP-VVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNL 624 (1140)
Q Consensus 546 ~~ip~~i~~~~~~~~~~~~~~-~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~ 624 (1140)
..+++ +..++..++.+++...+.. -.|.+..+++|.++||++ |+. .+
T Consensus 487 ----------------~~e~~~l~~v~~~l~~l~~~~~~~~-----~~~~v~~~~~~~lgry~~-~~~----~~------ 534 (1049)
T 3m1i_C 487 ----------------DTEKRFVVTVIKDLLDLTVKKRGKD-----NKAVVASDIMYVVGQYPR-FLK----AH------ 534 (1049)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTSSCSHH-----HHHHHHHHHHHHHHHCHH-HHH----HC------
T ss_pred ----------------hhhHHHHHHHHHHHHHHHhhhcccc-----chHHHHHHHHHHHHHHHH-HHH----hH------
Confidence 01122 3456666666654221100 146677789999999984 763 12
Q ss_pred CCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhc-----
Q 001147 625 CHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVA----- 699 (1140)
Q Consensus 625 ~~~~~~~~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~----- 699 (1140)
+++..++.+.+.+.++. .+++|-..++ ..|..++.... ..++.
T Consensus 535 ------~~~l~~vl~~ll~~l~~-----------------------~~~~V~~~A~-~al~~l~~~~~--~~l~~~~~~~ 582 (1049)
T 3m1i_C 535 ------WNFLRTVILKLFEFMHE-----------------------THEGVQDMAC-DTFIKIVQKCK--YHFVIQQPRE 582 (1049)
T ss_dssp ------HHHHHHHHHHHHHHTTS-----------------------SCHHHHHHHH-HHHHHHHHHHT--HHHHSCCTTC
T ss_pred ------HHHHHHHHHHHHHHhcC-----------------------CCHHHHHHHH-HHHHHHHHHHH--HHhhcccCCC
Confidence 12233334444433332 2345555555 55555554321 12221
Q ss_pred -cchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcc-cccccchhH
Q 001147 700 -LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDL-KNVSQQPDI 777 (1140)
Q Consensus 700 -~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~-~~~~~~~~i 777 (1140)
.|.+..+++.+.. -...++.+....+|++++.+++...+++....++..+|.|+..+|.++++.... .+...+++.
T Consensus 583 ~~p~~~~il~~l~~--~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~ 660 (1049)
T 3m1i_C 583 SEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSET 660 (1049)
T ss_dssp SSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHH
T ss_pred CCcHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHH
Confidence 2666666665422 122355556678999999998876655678889999999999999998754311 111123445
Q ss_pred HHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccc-ccccc---hhhh
Q 001147 778 ILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQIS-YLEVQ---ETNI 853 (1140)
Q Consensus 778 i~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~-~l~~~---~~~~ 853 (1140)
+..+..+++++..++.+.+....+.+ -+++.+++.+|........ +.+...+. -...+ ....
T Consensus 661 ~~~l~~~l~~~~~~~~~l~~~f~p~~-------~~i~~~~l~~~~~~~~~~~-------~~~~~~g~~~~~~p~~~~~~~ 726 (1049)
T 3m1i_C 661 VKIIANIIKTNVAVCTSMGADFYPQL-------GHIYYNMLQLYRAVSSMIS-------AQVAAEGLIATKTPKVRGLRT 726 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHCGGGGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHccCchhhhhHHHHHHHH
Confidence 55677899999999998876533211 1222233333332221110 11100000 00000 0112
Q ss_pred HHHHHHHHHHHhhhccc--Cc------------cccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCccchhh
Q 001147 854 VIDFCTRLLQLYSSHNI--GK------------MLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQ 919 (1140)
Q Consensus 854 Lf~~~~~ll~~y~~~~~--~~------------~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~~~~~d~ 919 (1140)
+...+.++++.|..... +. ...++++......+.+.+. ++..+...+.+.+.+
T Consensus 727 ~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~----l~~~ii~~~~~~~~~--------- 793 (1049)
T 3m1i_C 727 IKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLN----CMTTVVEKVGHMIPQ--------- 793 (1049)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHH----HHHHHHHHHGGGCHH---------
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHH----HHHHHHHHHHHhhhh---------
Confidence 22333333333332110 00 0000000000011122222 222222222222211
Q ss_pred hhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 001147 920 AINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLR 999 (1140)
Q Consensus 920 ~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~ 999 (1140)
....++-.-+.+++++|+.++.++|+++..||+|+..+++.||..+..+|++.|..+++++.||++|.++++.+.+++
T Consensus 794 --~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~ 871 (1049)
T 3m1i_C 794 --GVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQ 871 (1049)
T ss_dssp --HHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 011222355566778888889999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHh--------
Q 001147 1000 ALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLIL-------- 1071 (1140)
Q Consensus 1000 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~-------- 1071 (1140)
++..+.+.... .+....... .....+..++..++..++ +.+...-....+..|..++.
T Consensus 872 ~l~~l~~~~~~---~~~~~~~~~----------f~~~~~~~l~~~~~~~l~-~~~h~s~~~~~~~~l~~l~~~~~~~~i~ 937 (1049)
T 3m1i_C 872 IALDLVKNIER---MGNVPFANE----------FHKNYFFIFVSETFFVLT-DSDHKSGFSKQALLLMKLISLVYDNKIS 937 (1049)
T ss_dssp HHHHHHHHHHH---SCSCHHHHH----------HHHHHHHHHHHHHHHHHH-STTCGGGHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHh---cCChHHHHH----------HHHHHHHHHHHHHHHHHh-cchHhhhHHHHHHHHHHHHHHHhcCccc
Confidence 99999987643 111011111 113455667777777643 34444334555666666552
Q ss_pred -------------cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhc
Q 001147 1072 -------------CEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGF 1136 (1140)
Q Consensus 1072 -------------~~~~~f~~~~~~li~~q~~~~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~ 1136 (1140)
-++.++.+|+.+++.+..+....++.......|++. +.++.+|++++++|+.++|++
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~~--------~~~~~~f~~~~rdf~~~~~~~ 1007 (1049)
T 3m1i_C 938 VPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQ--------YKDLVVFKGTLRDFLVQIKEV 1007 (1049)
T ss_dssp SCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTSS
T ss_pred ccccCccccCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHhHhhhhh
Confidence 155689999999995542234567777777888863 578899999999999999987
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.1e-39 Score=427.62 Aligned_cols=887 Identities=14% Similarity=0.112 Sum_probs=552.9
Q ss_pred CChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChhH
Q 001147 3 VNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGY 82 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~ 82 (1140)
+.|++||++|.+|+++|++|..|..||+.+.+++++|+|+.+|++.|.++|..+++++|..||+++++++.+.. +.+++
T Consensus 40 ~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~~~ 118 (963)
T 2x19_B 40 ENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFA-SGSKI 118 (963)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTT-TSCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHc-CCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998854 45799
Q ss_pred HHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhccc----CChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHH
Q 001147 83 VQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI----HGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQ 158 (1140)
Q Consensus 83 v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k 158 (1140)
|++|++.+++.|+|++|++ .|++++.++.+.+.+. .++.++..++.+|..+.+|....+ . +.+++..
T Consensus 119 ir~kl~~~la~i~~~~~p~----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~---~--~~~~r~~ 189 (963)
T 2x19_B 119 VLTRLCVALASLALSMMPD----AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR---L--PQYRKGL 189 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC---C---------
T ss_pred HHHHHHHHHHHHHHHhCcc----ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc---C--cHHHHHH
Confidence 9999999999999999987 6889999999988641 145688999999999999886541 1 3333444
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccC
Q 001147 159 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 238 (1140)
Q Consensus 159 ~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1140)
++..++. .++.|+.++..++... . ....+...+|+++. +|...+...
T Consensus 190 ~~~~l~~-~~~~i~~ll~~~l~~~--------~--~~~~~~~~~l~~l~---~wi~~~~~~------------------- 236 (963)
T 2x19_B 190 VRTSLAV-ECGAVFPLLEQLLQQP--------S--SPSCVRQKVLKCFS---SWVQLEVPL------------------- 236 (963)
T ss_dssp --CCSGG-GHHHHHHHHHHHHSCT--------T--CCHHHHHHHHHHHH---HHHTSSCCG-------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHhCC--------C--CchHHHHHHHHHHH---HHHcCCCCc-------------------
Confidence 4555554 4778877766655321 0 12247777887774 687754421
Q ss_pred CCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHHHH
Q 001147 239 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHH 318 (1140)
Q Consensus 239 ~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~y 318 (1140)
...+.+++.+|+... +++++..+++|+.++.+.+.+ ++ +..+
T Consensus 237 ------------------~~~~~ll~~l~~~l~-------------~~~~~~~a~~~l~~i~~~~~~----~~---~~~~ 278 (963)
T 2x19_B 237 ------------------QDCEALIQAAFAALQ-------------DSELFDSSVEAIVNAISQPDA----QR---YVNT 278 (963)
T ss_dssp ------------------GGTHHHHHHHHHHTT-------------STTTHHHHHHHHHHHHTCTTG----GG---CHHH
T ss_pred ------------------ccchHHHHHHHHHhC-------------CchHHHHHHHHHHHHHccccc----cc---CHHH
Confidence 112556777775431 266899999999999874321 11 2446
Q ss_pred HHHHHHhhhhhcCChhHHHHHhhhCCChhhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHHHHHhhc
Q 001147 319 LLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMN 398 (1140)
Q Consensus 319 l~~~l~~~~~~l~~~~~~~~~~~~g~~~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 398 (1140)
+..++.++...+. .+..+... -+.+.+..+|+++.++...++ ..+.+-... -..+..+...++. .+.
T Consensus 279 ~~~l~~~~~~~~~---~~~~~~~~-~d~~~~~~~~~l~~~~~~~~~-~~l~~~~~~------~~~~~~~l~~ll~-~~~- 345 (963)
T 2x19_B 279 LLKLIPLVLGLQE---QLRQAVQN-GDMETSHGICRIAVALGENHS-RALLDQVEH------WQSFLALVNMIMF-CTG- 345 (963)
T ss_dssp HHHHHHHHHTTHH---HHHHHHHT-TCHHHHHHHHHHHHHHHHHHH-HHHHHCGGG------HHHHHHHHHHHHH-HHT-
T ss_pred HHHHHHHHHhhHH---HHHHHHHC-CCHHHHHHHHHHHHHHHHHhH-HHHHcCccc------hHHHHHHHHHHHH-HHc-
Confidence 6667666654431 12222222 145777889999999887653 111100000 0111111111222 111
Q ss_pred ccccccchHHHHHHHHHHHHHhhhcccccCCC--CCCChhhhhhHHHHHHHHHhcccccccccccCCCCccchhhccH-H
Q 001147 399 NTEEGTWSWEARDILLDTWTTLLVSLDSTGRN--VVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASI-S 475 (1140)
Q Consensus 399 ~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~--~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d~~e~~~~d~-~ 475 (1140)
....+....+....++++|..+++.......+ ............++....+. +|..|++...++.| ++++++. +
T Consensus 346 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~-~~~~p~~~~~~~~~--~de~~~~~~ 422 (963)
T 2x19_B 346 IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLH-KAQFPSDEEYGFWS--SDEKEQFRI 422 (963)
T ss_dssp CSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCHHHHHTSC--HHHHHHHHH
T ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHcCCCcccccCCC--hhHHHHHHH
Confidence 11111112344678899999998844321100 00000111222333333333 55544332111111 1111222 2
Q ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhhHhccCCCCCccCChhhHhhh
Q 001147 476 AMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTH 555 (1140)
Q Consensus 476 ~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i~g~~l~~~~~ge~~~ip~~i~~~ 555 (1140)
..+...+++..+++..+.++.+.+.+.+.+..+++. ++ ..+...|-..|++ |++..+-.+++
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~---~~-~~w~~~eaal~al---~~i~~~~~~~~----------- 484 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE---EP-YSWQHTEALLYGF---QSIAETIDVNY----------- 484 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC---CS-CCHHHHHHHHHHH---HHHTTSCCSSC-----------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC---CC-CchHHHHHHHHHH---HHHHhhcCchh-----------
Confidence 234556777788888888888888888877654441 11 1234445544444 44421111111
Q ss_pred hhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccch
Q 001147 556 FVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSS 635 (1140)
Q Consensus 556 ~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~ 635 (1140)
.+.+..++..+.++ .. -+|.+..+.+|+++||++ |+.. + +....
T Consensus 485 --------~~~l~~l~~~l~~l-----~~------~~~~vr~~~~~~l~~~~~-~l~~----~------------~~~l~ 528 (963)
T 2x19_B 485 --------SDVVPGLIGLIPRI-----SI------SNVQLADTVMFTIGALSE-WLAD----H------------PVMIN 528 (963)
T ss_dssp --------CSHHHHHHHHGGGS-----CC------CSHHHHHHHHHHHHHTHH-HHHH----C------------HHHHT
T ss_pred --------hHHHHHHHHHHHhC-----CC------CcHHHHHHHHHHHHHHHH-HHHh----C------------HHHHH
Confidence 11122333222211 11 157899999999999985 6631 1 11122
Q ss_pred hhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHHHhhchhh
Q 001147 636 TSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKT 715 (1140)
Q Consensus 636 ~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 715 (1140)
++ ++++...+.. +.|...++ ..|..++.... ..+ .|.+..+++....-..
T Consensus 529 ~v---------------------l~~l~~~l~~----~~V~~~A~-~al~~l~~~~~--~~l--~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 529 SV---------------------LPLVLHALGN----PELSVSSV-STLKKICRECK--YDL--PPYAANIVAVSQDVLM 578 (963)
T ss_dssp TT---------------------HHHHHHHTTC----GGGHHHHH-HHHHHHHHHTG--GGC--TTTHHHHHHHHHHHHH
T ss_pred HH---------------------HHHHHHHhCC----chHHHHHH-HHHHHHHHHHH--HHH--HhhHHHHHHHHHHHhc
Confidence 22 3333333322 45666666 66776664321 112 2666666655321100
Q ss_pred hhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhcc
Q 001147 716 LILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANAT 795 (1140)
Q Consensus 716 ~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~ll~~l~Gi~~a~ 795 (1140)
-..++.+.+..+|++++.++.+.. ++....|+..+|.|+...|.++.+.+. +++.+..+...++++.+++++.
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~------~~~~~~~~~~~l~~l~~i~~~~ 651 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEEIP------NPSNKLAIVHILGLLSNLFTTL 651 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSSCS------CHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHc
Confidence 001445667789999999887554 567788999999999999999875431 3555666778888888888887
Q ss_pred CCC------------------cHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhhccccccccchhhhHHHH
Q 001147 796 EPR------------------TQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDF 857 (1140)
Q Consensus 796 ~~~------------------~~~~l~~~l~~~~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~~~~~~Lf~~ 857 (1140)
... +...+..++...++++..+++.|.+++++...+++++...+...+....+ .+-..
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~----~l~~~ 727 (963)
T 2x19_B 652 DISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAP----MVPQL 727 (963)
T ss_dssp CSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGG----GHHHH
T ss_pred CCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccc----cHHHH
Confidence 632 11245566667799999999999999999999999999988654433221 12223
Q ss_pred HHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCC-ccchhhhhchhHHHhhhhhcccc
Q 001147 858 CTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSS-DSIEAQAINISQVVFFGLHIVTP 936 (1140)
Q Consensus 858 ~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~-~~~~d~~~~~~~v~~~~l~~~lP 936 (1140)
+-.++..|...+ . ..++.+++.++. .||. +.+++. +. ..+-..+.++++
T Consensus 728 ~~~l~~~~~~~~----------------~-------~~~l~l~~~li~----~f~~~~~~~~~-~~--~~l~~~~~~~l~ 777 (963)
T 2x19_B 728 CEMLGRMYSTIP----------------Q-------ASALDLTRQLVH----IFAHEPAHFPP-IE--ALFLLVTSVTLT 777 (963)
T ss_dssp HHHHHHHHHHSC----------------C-------HHHHHHHHHHHH----HHTTCTTTCHH-HH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----------------c-------cHHHHHHHHHHH----HhCCCcchHHH-HH--HHHHHHHHHHHH
Confidence 334445554211 0 113344444443 1222 111211 11 112233566778
Q ss_pred ccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001147 937 LMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGK 1016 (1140)
Q Consensus 937 li~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~ 1016 (1140)
+++.++.++|++++.||.|+..+++.+|..+.. ++..|..+++++.+|+++.++++++.|++++..++++.. +.
T Consensus 778 ~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~-----~~ 851 (963)
T 2x19_B 778 LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG-----EV 851 (963)
T ss_dssp HHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT-----SS
T ss_pred HHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-----Ch
Confidence 888888899999999999999999999998864 333499999999999999999999999999999986542 11
Q ss_pred ccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhC--CCchhH
Q 001147 1017 VGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--ANPPFK 1094 (1140)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q--~~~~~~ 1094 (1140)
+... +.+ ......++..++..+..+..... ++.++..++.|+..+++.+.+|+.+++..+ |.....
T Consensus 852 ~~~~-~~~----------~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~ 919 (963)
T 2x19_B 852 ESVG-KVV----------QEDGRMLLIAVLEAIGGQASRSL-MDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLS 919 (963)
T ss_dssp CHHH-HHT----------TTSHHHHHHHHHHHHTTTSCGGG-HHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCC
T ss_pred HHHH-HHH----------HHHHHHHHHHHHHHhcccCChhH-HHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCC
Confidence 1111 111 13467788888887665555544 478899999999999999999999998522 311222
Q ss_pred -HHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhcc
Q 001147 1095 -SRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFL 1137 (1140)
Q Consensus 1095 -~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~l 1137 (1140)
++......+|+. .+.++++|++++++|..++||+-
T Consensus 920 ~~~~~~f~~~l~~--------~~~~~~~f~~~l~~F~~~~r~~~ 955 (963)
T 2x19_B 920 PEQKDTFSQQILR--------ERVNKRRVKEMVKEFTLLCRGLH 955 (963)
T ss_dssp HHHHHHHHHHHTC--------SSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH--------HHcCcHHHHHHHHHHHHHHcCcc
Confidence 333444456654 24579999999999999999974
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-32 Score=356.56 Aligned_cols=910 Identities=11% Similarity=0.070 Sum_probs=526.3
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChh
Q 001147 2 HVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEG 81 (1140)
Q Consensus 2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~ 81 (1140)
++.|++||++|.+|+++|++|..|..||+.+++++++|+|+.+|++.|.++|..+|+++|..||+++++++.+.. +.++
T Consensus 21 ~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~~ 99 (971)
T 2x1g_F 21 SQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA-GGPK 99 (971)
T ss_dssp TTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT-TSCH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC-CCCH
Confidence 457999999999999999999999999999999999999999999999999999999999999999999998865 4579
Q ss_pred HHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccC-----ChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHH
Q 001147 82 YVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-----GVDTQFIGINFLESLVSEFSPSTSSAMGLPREFH 156 (1140)
Q Consensus 82 ~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h 156 (1140)
+|++|++.+++.|+|++|+ .|++++.++.+.+.+.. ++.++..++.+|..+.+|....+ +.. +.
T Consensus 100 ~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~----~~~--~r 168 (971)
T 2x1g_F 100 IVLNRLCISLGAYIVHMLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH----TSV--KR 168 (971)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC----CSS--CH
T ss_pred HHHHHHHHHHHHHHHHccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC----cHH--HH
Confidence 9999999999999999998 48899999999987421 45688999999999999865332 111 12
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcc--cccccCCCCCccccccccccccc
Q 001147 157 EQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN--WDFQFDTSGRKISINVFSAGVRT 234 (1140)
Q Consensus 157 ~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls--w~f~~~~~~~~~~~~~~~~~~~~ 234 (1140)
...+..++. .++.++.++..+++.... .........+...+|+|+..++. |.+.+.
T Consensus 169 ~~~~~~l~~-~~~~vl~ll~~~l~~~~~----~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~----------------- 226 (971)
T 2x1g_F 169 VVLRAEIAK-RVQLVIHTVERYLKLQMN----RVWDAEAYSNMNRAVKCVGTWIKNIGYTIEG----------------- 226 (971)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHSCCCGGG-----------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcccC----CCCCccchhHHHHHHHHHHHHHhhCCcCccc-----------------
Confidence 223444444 477787776666644311 00001123678899999988777 775541
Q ss_pred cccCCCccccccccCCccchHHhhccchHHHHHHH---HH-HhhhcccCCC-CCCCchhhHHHHHHHHHHHhcccCccCC
Q 001147 235 ETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL---YS-ALRQKFSSEG-YWLDCPIAVSARKLIVQLCSLTGTVFPS 309 (1140)
Q Consensus 235 ~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~---y~-~~~~~~~~~~-~~~~~~l~~~~l~cL~qLasl~~~~f~~ 309 (1140)
.+.+++.+|.+ |. ..+.. .+|. ...+++++..+++|+.++.+...+
T Consensus 227 ------------------------~~~ll~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~~i~~~~~~---- 277 (971)
T 2x1g_F 227 ------------------------CVTITAVLLEVVHKCYWPCIHA-GDGCMTADENELAESCLKTMVNIIIQPDC---- 277 (971)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHSSSCC----CCCCHHHHHHHHHHHHHHHHHHHCSGG----
T ss_pred ------------------------cccHHHHHHhhhhhhccccccc-cccccCcCCcHHHHHHHHHHHHHHcCccc----
Confidence 14567777761 11 00000 0000 001367899999999999875321
Q ss_pred CChhhHHHHHHHHHHhhhhhcCChhHHHHHhhhCCC---hhhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHH
Q 001147 310 DNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKS---ESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSN 386 (1140)
Q Consensus 310 ~~~~~r~~yl~~~l~~~~~~l~~~~~~~~~~~~g~~---~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~ 386 (1140)
. .+..++..++.++..+... ...+... -+ ++....+|+++.++...+. ..+.+-+..... .....+..
T Consensus 278 -~--~~~~~~~~l~~~~~~~~~~---~~~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~~ 348 (971)
T 2x1g_F 278 -H--NYPKTAFVLIKMFLDSLSE---ITKTEWK-RENDNEDIIVHIYMLFVSSVERHS-TLLLSGITSADP-ELSILVHR 348 (971)
T ss_dssp -G--GCHHHHHHHHHHHHHHHHH---HHHHHSS-SSCSCSHHHHHHHHHHHHHHHHTH-HHHHHHHHTCCH-HHHHHHHH
T ss_pred -c--ccHHHHHHHHHHHHHhHHH---HHHHHhc-ccccchHHHHHHHHHHHHHHHHHH-HHHHHHhccCcc-cccHHHHH
Confidence 1 2456777777776654321 1111111 13 3677889999999887643 111100000000 00011112
Q ss_pred HHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCCh---hhhhhHHHHHHHHHhcccccccccccCC
Q 001147 387 LMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL---EVRNAAASLFALIVESELKVASASAMDD 463 (1140)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~---~~~~~~~~i~~~yi~srl~~~~~~~~~e 463 (1140)
+...++.. +. ...-.....+....++++|..+.+...........+. ....+..++....+. ++..|+....
T Consensus 349 ~l~~ll~~-~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~p~~~~~-- 423 (971)
T 2x1g_F 349 IVQEILHC-TD-KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR-KSEQPDEKSL-- 423 (971)
T ss_dssp HHHHHHHH-HH-CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH-HTSCCCTTTT--
T ss_pred HHHHHHHH-Hc-CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH-HhcCCCcccc--
Confidence 11222221 11 1000011245677899999999763311100000111 111222233333333 4444332111
Q ss_pred CCccchhhccH-HHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhhHhccCCC
Q 001147 464 NGEFNYLQASI-SAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGE 542 (1140)
Q Consensus 464 ~d~~e~~~~d~-~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i~g~~l~~~~~ 542 (1140)
++++.+++++- ...+..-+.+-.+++..++++.+.+.+.+.+..+.+... . ..|.+..-+++..|++ ++...
T Consensus 424 ~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~--~----~~w~~~eaal~~l~~i-ae~~~ 496 (971)
T 2x1g_F 424 AKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRH--P----THWTKLEACIYSFQSV-AEHFG 496 (971)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHC--T----TCCHHHHHHHHHHHHT-TTC--
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC--C----CcHHHHHHHHHHHHHH-HhhcC
Confidence 11111111221 222445556666777777788888888888776655321 1 2334455566667776 33221
Q ss_pred CCccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCC
Q 001147 543 GEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSST 622 (1140)
Q Consensus 543 ge~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~ 622 (1140)
.+ ....+..++..+..+ ..+. ..|.+..+.+|+++||+. |+..+ .
T Consensus 497 ~~------------------~~~~l~~l~~~l~~l-----~~~d----~~~~vr~~a~~~l~~~~~-~l~~~---~---- 541 (971)
T 2x1g_F 497 GE------------------EKRQIPRLMRVLAEI-----PYEK----LNVKLLGTALETMGSYCN-WLMEN---P---- 541 (971)
T ss_dssp ----------------------CHHHHHHHHHHHS-----CTTT----SCHHHHHHHHHHHHHTHH-HHC----------
T ss_pred hh------------------hhHHHHHHHHHHHhc-----Cccc----cCHHHHHHHHHHHHHHHH-HHhcC---H----
Confidence 10 011122333322222 1111 268899999999999984 77421 1
Q ss_pred CcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccch
Q 001147 623 NLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGS 702 (1140)
Q Consensus 623 ~~~~~~~~~~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~ 702 (1140)
+...++.+.+...++ ++|...++ ..|..+++... ..+ .|.
T Consensus 542 ---------~~l~~vl~~l~~~l~--------------------------~~v~~~A~-~al~~l~~~~~--~~l--~p~ 581 (971)
T 2x1g_F 542 ---------AYIPPAINLLVRGLN--------------------------SSMSAQAT-LGLKELCRDCQ--LQL--KPY 581 (971)
T ss_dssp ----------CHHHHHHHHHHHHH--------------------------SSCHHHHH-HHHHHHHHHCH--HHH--HHH
T ss_pred ---------HHHHHHHHHHHHHhC--------------------------hHHHHHHH-HHHHHHHHHHH--Hhc--ccc
Confidence 112222222222221 23444555 55655553321 111 255
Q ss_pred HHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHH
Q 001147 703 WRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVS 782 (1140)
Q Consensus 703 ~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~ 782 (1140)
+..+++.+..-..-..++.+.+..+|++++.++.+.. +++...++..++.|+...|+++.+.+.. +++.+..+.
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~-----~~~~~~~~~ 655 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQADSK-----TPAARIRTI 655 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCCC-----ChhhHHHHH
Confidence 5555554322111011345667789999999887554 5677889999999999999998765421 223344566
Q ss_pred HHHHHhhhhhhccCCCc---------HHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhhccccccccchhhh
Q 001147 783 CLLERLRGAANATEPRT---------QKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNI 853 (1140)
Q Consensus 783 ~ll~~l~Gi~~a~~~~~---------~~~l~~~l~~~~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~~~~~~ 853 (1140)
..+..+.|++.+..... ...+..++...++++..+++.|.++++++..+++++...+...+..+.+ -.-.
T Consensus 656 ~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p-~l~~ 734 (971)
T 2x1g_F 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQP-MLQD 734 (971)
T ss_dssp HHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CT-HHHH
T ss_pred HHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccc-cHHH
Confidence 77777777777765320 1234555666688888888888888999999999999988755443322 1111
Q ss_pred HHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCc-cchhhhhchhHHHhhh-h
Q 001147 854 VIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSD-SIEAQAINISQVVFFG-L 931 (1140)
Q Consensus 854 Lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~~-~~~d~~~~~~~v~~~~-l 931 (1140)
+ +-.++..|.+. +. . .++.+++.++.+ ||.+ .+.+ .....+.. .
T Consensus 735 ~---~~~l~~~~~~~------------------~~--~---~~l~l~~~~i~~----~~~~~~~~~----~l~~~~~~~~ 780 (971)
T 2x1g_F 735 L---CLFIVASFQTR------------------CC--A---PTLEISKTAIVM----FFKDEGCKP----LMQQLLREFI 780 (971)
T ss_dssp H---HHHHHHHCC--------------------CC--H---HHHHHHHHHHTT----CCC-----H----HHHHHHHHHH
T ss_pred H---HHHHHHHHhcC------------------Cc--h---HHHHHHHHHHHH----hCCCcchHH----HHHHHHHHHH
Confidence 1 11222333210 00 1 244444444432 1210 0111 00111100 1
Q ss_pred hccccccc----cccccchhhhHHHHHHHHHHHhhChhhhhcCCHHH-HHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q 001147 932 HIVTPLMS----GDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEA-FAHVLGTLDFGLHHQDSEIVDMCLRALRALAS 1006 (1140)
Q Consensus 932 ~~~lPli~----~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~-f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~ 1006 (1140)
..++.+++ .++.+.|++++.||.|+..+.+.+|..+..- .. +..++++...++++.+++..+.++.++..+.+
T Consensus 781 ~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s--~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~ 858 (971)
T 2x1g_F 781 QHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDK--TLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVM 858 (971)
T ss_dssp HHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT--TSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCC--cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 11122222 2566799999999999999999999988642 44 79999999999999999999999999988776
Q ss_pred HHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHH
Q 001147 1007 YHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIE 1086 (1140)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~ 1086 (1140)
.- . ..+... +. .......++..++..+ .+....+.++.++.+|..++..+|+.+..|+.+.+.
T Consensus 859 ~~-~----~~~~~~-~~----------~~~~g~~l~~~l~~~~-~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~ 921 (971)
T 2x1g_F 859 QS-R----NHAHVT-EV----------VLATGEQTLYTAMMCV-GYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMS 921 (971)
T ss_dssp HH-T----TCHHHH-HH----------HHHHHHHHHHHHHHHH-HTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cC-C----chHHHH-HH----------HHHhHHHHHHHHHHHh-cccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhc
Confidence 51 0 110111 11 1234556677777664 456667777899999999999999999999998886
Q ss_pred h--CCCchhHHHHH-HHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhccc
Q 001147 1087 R--QANPPFKSRLA-NALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLR 1138 (1140)
Q Consensus 1087 ~--q~~~~~~~~l~-~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~l~ 1138 (1140)
. -|.....+..+ ++..+|+.. +.++++|++.+++|...+||+-.
T Consensus 922 ~~~~p~~~~~~~~~~~f~~~l~~~--------~~~~r~~~~~~~~f~~~~r~~~~ 968 (971)
T 2x1g_F 922 TPNFPTQLITDADKTRYTALIIKE--------KVNKRLLQQHLSEMAMKTRGLTE 968 (971)
T ss_dssp SSSCSCSSSCHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHC---
T ss_pred ccCCCCCcCCHHHHHHHHHHHHHH--------HhChHhHHHHHHHHHHHHcCccc
Confidence 2 23222333333 444666542 34789999999999999998753
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=2.7e-30 Score=332.47 Aligned_cols=903 Identities=12% Similarity=0.120 Sum_probs=490.8
Q ss_pred CChHHHHHHHHhhccCCCcHHHHHHHHhcCC--chhHHHHHHHHHHHHHhhccCccCHH----HHHHHHHHHHHHHHhcC
Q 001147 3 VNPAAAEATILGLCQSPQPYKACQFILENSQ--VANARFQAAAAIRDAAMREWSFLTAD----EKKSLIGFCLCFVMQHA 76 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~--~~~~~f~a~~~L~~~i~~~W~~l~~~----~k~~lr~~ll~~l~~~~ 76 (1140)
+.|++|+++|.+|+++|++|+.|..||.+++ +++++|||+++|++.|. .++++ ++..||+++++++.+..
T Consensus 23 ~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~ 98 (980)
T 3ibv_A 23 IIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELS 98 (980)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhc
Confidence 5699999999999999999999999999875 79999999999999998 59999 99999999999998732
Q ss_pred -CCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCCh-hhHHHHHHHHHHHHhhhCCCCCCCCCCcHH
Q 001147 77 -SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-DTQFIGINFLESLVSEFSPSTSSAMGLPRE 154 (1140)
Q Consensus 77 -~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gl~lL~~lv~efs~~~ss~~~~~~~ 154 (1140)
.+.+++|++|++++++.|+|+.|++ .|++++.++.+.+.+. ++ ......+++|..+-+|.... .+.++.+
T Consensus 99 ~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~-~~~~~~~~~LriL~~i~EEv~~~---~~~~~~~ 170 (980)
T 3ibv_A 99 FLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAAS-SQSEFSNFYLKVLLSIGDEIADS---LVLKTDV 170 (980)
T ss_dssp STTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCC---CSCCCHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCC-ChhHHHHHHHHHHHHhHHHHHhc---ccccCHH
Confidence 1468999999999999999999998 7999999999999752 33 45677899999888887654 2334444
Q ss_pred HHHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccc
Q 001147 155 FHEQ---CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAG 231 (1140)
Q Consensus 155 ~h~k---~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~ 231 (1140)
.+.| .|..++++++..|++.++.+|.+.... .+..+...+|+|+..+++|.+.+.
T Consensus 171 ~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~L~~l~s~i~wi~~~~-------------- 228 (980)
T 3ibv_A 171 QIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLCLQVYAQWVSWININL-------------- 228 (980)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTTTSCHHH--------------
T ss_pred HHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHhhcCHHh--------------
Confidence 3434 478899888999999999999876531 245688999999999999988765
Q ss_pred ccccccCCCccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCC
Q 001147 232 VRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDN 311 (1140)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~ 311 (1140)
+.++.+++++|.... +++++..|.+||.++.+-+.+ ++
T Consensus 229 -------------------------i~~~~ll~~l~~~L~-------------~~~~r~~A~ecL~ei~~k~~~----~~ 266 (980)
T 3ibv_A 229 -------------------------IVNEPCMNLLYSFLQ-------------IEELRCAACETMTEIVNKKMK----PL 266 (980)
T ss_dssp -------------------------HHCHHHHHHHHHHTT-------------SHHHHHHHHHHHHHHHHSCCC----HH
T ss_pred -------------------------hhcchHHHHHHHHcC-------------ChHHHHHHHHHHHHHHHcCCC----hh
Confidence 666788888886533 257899999999999985532 11
Q ss_pred hhhHHHHHHHHHHhhhhhcCChhHHHHHhhhCCChhhHHHHHHHHHHHHhccChhhHHhhhhccCc--chh-----HHHH
Q 001147 312 GKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRP--FGT-----LTLL 384 (1140)
Q Consensus 312 ~~~r~~yl~~~l~~~~~~l~~~~~~~~~~~~g~~~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~--~~~-----l~~l 384 (1140)
.+...+..+ ++..++.... ...-+.+....+||++..+...+. .. ..... ... ...+
T Consensus 267 --~k~~li~~l--~L~~~~~~l~------~~~~D~d~~~~la~L~~~~ge~l~-----~~-~~~~~~~~~~~~~~~~~~l 330 (980)
T 3ibv_A 267 --EKLNLLNIL--NLNLFFSKSQ------EQSTDPNFDEHVAKLINAQGVELV-----AI-KSDPSELSPELKENCSFQL 330 (980)
T ss_dssp --HHHHHHHHH--HHHHHHCC-----------CCHHHHHHHHHHHHHHHHHHH-----HH-HTSCC--CHHHHHHHHHHH
T ss_pred --hHHHHHHHH--hHHHHHHHHh------cccccHHHHHHHHHHHHHHHHHHH-----HH-ccCccccchhhhhhHHHHH
Confidence 234444442 2333333211 001234555678888877765321 11 11000 000 0111
Q ss_pred HHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCC
Q 001147 385 SNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDN 464 (1140)
Q Consensus 385 ~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~ 464 (1140)
..+....++.. ...+ .+.....++||..++....+...+...+.....+..++....+ .||+.|+....+++
T Consensus 331 ~~ll~~lL~~~---~~~~----deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li-~k~~yp~d~~~~~~ 402 (980)
T 3ibv_A 331 YNLFPYLIRYL---SDDY----DETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAII-KKMKYDESQEWDDD 402 (980)
T ss_dssp HHTHHHHHHHH---TCSS----HHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHH-HTTSCCTTCCCCCC
T ss_pred HHHHHHHHHHh---CCCc----hhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH-HHccCCCccccccc
Confidence 11111122221 1112 3667789999999987544321122233333334445554433 47777754321111
Q ss_pred CccchhhccHHHHHHHHH-HHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHhhHhccCCCC
Q 001147 465 GEFNYLQASISAMDERLS-SYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEG 543 (1140)
Q Consensus 465 d~~e~~~~d~~~~~~ql~-~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i~g~~l~~~~~g 543 (1140)
||+|+ +++-..|+..+. .+-.++...++.....+.+.+....++... ++....|+++.-.++..|++ ++...+
T Consensus 403 ~d~ed-~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~----~~~~~~W~~~EaaL~~l~~i-aE~i~~ 476 (980)
T 3ibv_A 403 PDSEE-EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAAT----LSPENSWQLIEFALYETYIF-GEGLRG 476 (980)
T ss_dssp SSSST-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHT-TTTCCS
T ss_pred cchhH-HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc----ccCCCCHHHHHHHHHHHHHH-Hhhccc
Confidence 11111 111112332222 223344556777777555565554433221 11224588888888888876 443211
Q ss_pred CccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCC
Q 001147 544 EIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTN 623 (1140)
Q Consensus 544 e~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~ 623 (1140)
....++ .+...-| .++.-+.++.+... . ..-.|.+..+.+|+++||.+ |+. . +
T Consensus 477 ~~~~~~----------~~~~~lp--~l~~ll~~ll~s~i----~-~~~hp~V~~~~~~~l~rys~-~~~---~-~----- 529 (980)
T 3ibv_A 477 PDAFFN----------EVDKSPT--VLSQILALVTTSQV----C-RHPHPLVQLLYMEILVRYAS-FFD---Y-E----- 529 (980)
T ss_dssp GGGTBC----------SSSCCBC--HHHHHHHHHHHSST----T-TCCCHHHHHHHHHHHHHTGG-GGG---T-C-----
T ss_pred cccccC----------cccchhH--HHHHHHHHHHhCCC----C-CCCCHHHHHHHHHHHHHHHH-HHh---c-C-----
Confidence 000000 0001112 33333344433211 1 11368999999999999985 884 2 2
Q ss_pred cCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchH
Q 001147 624 LCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSW 703 (1140)
Q Consensus 624 ~~~~~~~~~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~ 703 (1140)
.+....+.+.+....|-.++ ++.|...++ .+|..+++.... .+ .|..
T Consensus 530 -------~~~l~~~L~~ll~~~gl~~~---------------------~~~V~~~a~-~af~~f~~~~~~--~L--~~~~ 576 (980)
T 3ibv_A 530 -------SAAIPALIEYFVGPRGIHNT---------------------NERVRPRAW-YLFYRFVKSIKK--QV--VNYT 576 (980)
T ss_dssp -------CTTHHHHHHHHTSTTTTTCC---------------------CTTTHHHHH-HHHHHHHHHTTT--TC--SSSH
T ss_pred -------chhHHHHHHHHhccccccCC---------------------ChhHHHHHH-HHHHHHHHHhhH--Hh--hhHH
Confidence 12222222222221122111 122222222 233322221100 00 1233
Q ss_pred HHHHHHhhchhhhhcc-------------------cchhhHHHHHHHHHHHhcCC-CcccchHHHHHHHHHHHHHHHHhh
Q 001147 704 RELASAFANDKTLILL-------------------NSTNQRSLAQTLVLSAYGMR-NSESSNQYVRDLTRHATAYLVELS 763 (1140)
Q Consensus 704 ~~l~~~~~~~~~~~~l-------------------~~~~~~~l~~al~~~~~~~~-~~~~~~~~~~~~m~pl~~~~~~l~ 763 (1140)
..+++.+..--..... +.+.+..+|+++|.+++... +++.+..+++.++.|+...+...+
T Consensus 577 ~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l 656 (980)
T 3ibv_A 577 ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAAL 656 (980)
T ss_dssp HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222110000000 01235679999999987654 456778899999999999999998
Q ss_pred CCCcccccccchhHHHHHHHHHHHhhhhhhccCCC--cHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 001147 764 GKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR--TQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDG 841 (1140)
Q Consensus 764 ~~~~~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~--~~~~l~~~l~~~~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~ 841 (1140)
+..... +++.. ++..++..+..++++.... ....+...|.+.++++..+++.|..+..|...+.++|...+..
T Consensus 657 ~~~~~~----~~~~~-~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 657 SSDLSA----LENII-SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp TTSCC------CHHH-HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred hhcccC----ccHHH-HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 654321 01122 4444554454455543321 1112567778889999999999999999999999999999987
Q ss_pred cccccccchhhhHHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCccchhhhh
Q 001147 842 QISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAI 921 (1140)
Q Consensus 842 ~~~~l~~~~~~~Lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~~~~~d~~~ 921 (1140)
.+..+.+ .+=+.+-.++..|.. ..+.+..-++..+.+...+++.++- ++-+
T Consensus 732 lg~~~~p----~lp~~i~~ll~~~~~--------------------~e~~~fL~l~~qli~~f~~~~~~~l-----~~ll 782 (980)
T 3ibv_A 732 VGPDMLP----KVPQLISILLNSIDM--------------------NELVDVLSFISQLIHIYKDNMMEIT-----NRML 782 (980)
T ss_dssp THHHHTT----THHHHHHHHHHHCCT--------------------TTHHHHHHHHHHHHHHTTTTSHHHH-----HHHH
T ss_pred ccHhHHH----HHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 6655443 111112222222211 1122222233333333333321100 0001
Q ss_pred -chhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhh-cC-CHHHHHHHHHHHHh-hccCCchHHHHHH
Q 001147 922 -NISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVA-QL-STEAFAHVLGTLDF-GLHHQDSEIVDMC 997 (1140)
Q Consensus 922 -~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~-~l-~~~~f~~l~~sl~~-Gl~~~d~~I~~~~ 997 (1140)
.....+|..+.. -+.-|+.+..-+++.++||.++..+..+.-..+. .- +...|..++.++.. |..+.|+...+.|
T Consensus 783 ~~l~~~if~~l~~-~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a 861 (980)
T 3ibv_A 783 PTLLMRIFSSLSA-APQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSS 861 (980)
T ss_dssp HHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 111222222221 1112234556788999999999999986644432 22 23567888887774 4667899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCc------hHHHhhhhHHHHHh
Q 001147 998 LRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPD------MVGTAADALFPLIL 1071 (1140)
Q Consensus 998 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~------~~~~~s~~l~~Li~ 1071 (1140)
+.++.++++.+.... +-+|+. .=++. ++.+.|...+...++.. .+..++..+-.+..
T Consensus 862 ~~~l~~~v~~~~~~~--~~~gf~--------------~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~ 924 (980)
T 3ibv_A 862 IALVSKMVSLWGGKD--GIAGFE--------------NFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILE 924 (980)
T ss_dssp HHHHHHHHHC---------CCHH--------------HHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--cchHHH--------------HHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998764221 111211 12233 66666665444343321 12233333333322
Q ss_pred cCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchh
Q 001147 1072 CEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRG 1135 (1140)
Q Consensus 1072 ~~~~~f~~~~~~li~~q-~~~~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~ 1135 (1140)
...+.|-++ |-+.. |.-...+.+...|.+-+. ..+...|++-+..|+...||
T Consensus 925 ~~g~~~~~~---l~~~~lp~~~~~~~~~~~~~~~l~---------~~~~k~f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 925 KLGDIYKSY---LVTVYFPTVNFPDVMASEYLQALS---------NLDSRSFKQFFQKFIQALKS 977 (980)
T ss_dssp HHHHHHHHH---HHHTTTTC----CCHHHHHHHC-------------------------CHHHHC
T ss_pred hcCHHHHHH---HHHhcCCcCCCCHHHHHHHHHHHh---------ccchhhHHHHHHHHHHHhhc
Confidence 222223333 22221 221222334444433332 24577899999999998876
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.95 E-value=2.4e-23 Score=275.04 Aligned_cols=606 Identities=12% Similarity=0.101 Sum_probs=347.2
Q ss_pred ChHHHHHHHHhhccCCCcHHHHHHHHh-cCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCC---CC
Q 001147 4 NPAAAEATILGLCQSPQPYKACQFILE-NSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHAS---SP 79 (1140)
Q Consensus 4 ~r~~Ae~~l~~f~~~~~~~~~c~~iL~-~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~---~~ 79 (1140)
.|++||++|.+|+++|+.|..|..+|. .+.+++++|+|+.+|++.|.++|..+++++|..||+++++++.+... +.
T Consensus 29 ~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~ 108 (1204)
T 3a6p_A 29 YRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEE 108 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSS
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 399999999999999999999999998 78899999999999999999999999999999999999999987532 15
Q ss_pred hhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHHH
Q 001147 80 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC 159 (1140)
Q Consensus 80 ~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k~ 159 (1140)
+++|++|+++++|.|+|++|++ .|++++.++.+++.+ ++.++..++.+|..+.+|+...+ + +...++++.
T Consensus 109 ~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~--~--~~~~r~~~l 178 (1204)
T 3a6p_A 109 ENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQ--T--LPPQRRRDI 178 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSC--C--SCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHcccc--c--hHHHHHHHH
Confidence 7999999999999999999997 799999999999975 67788999999999999964431 1 233566777
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhh------c-cchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccc
Q 001147 160 RISLELDYLKTFYCWARDAALSVTKQII------E-SDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGV 232 (1140)
Q Consensus 160 ~~~f~~~~L~~if~~~~~~L~~~~~~~~------~-~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~ 232 (1140)
+..+++. ++.||.++.+++++.....- + .+...+...++.++|+++.++++|.+.+.
T Consensus 179 ~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~--------------- 242 (1204)
T 3a6p_A 179 QQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH--------------- 242 (1204)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH---------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH---------------
Confidence 8889877 99999999999876532110 0 00012345688999999999999988764
Q ss_pred cccccCCCccccccccCCccchHHhhc--cchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCC
Q 001147 233 RTETSSSKRSECIIVQPGPAWCDALIS--SGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSD 310 (1140)
Q Consensus 233 ~~~~~~~~~~~~~~~~~p~~W~~~l~~--~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~ 310 (1140)
+.+ +.+++++|.++. +++++..|++||.++++.+.+ +
T Consensus 243 ------------------------i~~~~~~ll~~l~~~l~-------------~~~lr~~A~ecL~~i~s~~~~--~-- 281 (1204)
T 3a6p_A 243 ------------------------ITAENCKLLEILCLLLN-------------EQELQLGAAECLLIAVSRKGK--L-- 281 (1204)
T ss_dssp ------------------------HHTTTSHHHHHHHHGGG-------------CTTTHHHHHHHHHHHHTCCSC--H--
T ss_pred ------------------------HHhccchHHHHHHHHcC-------------CHHHHHHHHHHHHHHHhCCCC--h--
Confidence 222 247887775322 366999999999999997653 1
Q ss_pred ChhhHHHHHHH----HHHhhhhhcCChhHHHHHhhhCCChhhHHHHHHHHHHHHhccChhhHHhhhhcc---CcchhHHH
Q 001147 311 NGKMQEHHLLQ----LLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSI---RPFGTLTL 383 (1140)
Q Consensus 311 ~~~~r~~yl~~----~l~~~~~~l~~~~~~~~~~~~g~~~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~---~~~~~l~~ 383 (1140)
+ .+..++.. .+.++...... . ...++ .+...++++.+.++...+. ..+..++... .....+.
T Consensus 282 ~--~~~~li~~l~~~~l~~l~~~~~~----~--~~~~~-~e~d~e~~k~l~~ll~~lg-~~l~~l~~~~~~~~~~~~l~- 350 (1204)
T 3a6p_A 282 E--DRKPLMVLFGDVAMHYILSAAQT----A--DGGGL-VEKHYVFLKRLCQVLCALG-NQLCALLGADSDVETPSNFG- 350 (1204)
T ss_dssp H--HHGGGGGGGSHHHHHHHHHHHHT----C--CCCSC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHTCSSCCCCTTHH-
T ss_pred h--hHHHHHHHHhhHHHHHHHHHhhc----C--CCCCC-ccHHHHHHHHHHHHHHHHH-HHHHHHHhccccccChhHHH-
Confidence 1 12222211 11122111100 0 00112 2333455555544443221 0111211100 0011111
Q ss_pred HHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHH--hccccccccccc
Q 001147 384 LSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIV--ESELKVASASAM 461 (1140)
Q Consensus 384 l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi--~srl~~~~~~~~ 461 (1140)
.+...++. ++. .. ..+.....+++|..++.+... ........+..++..... ..||..|+....
T Consensus 351 --~~l~~lL~-~t~--~~----~~~vs~~~l~fW~~ll~~~~~-----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~ 416 (1204)
T 3a6p_A 351 --KYLESFLA-FTT--HP----SQFLRSSTQMTWGALFRHEIL-----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS 416 (1204)
T ss_dssp --HHHHHHHH-HHT--SS----CHHHHHHHHHHHHHHHSCTTT-----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSS
T ss_pred --HHHHHHHH-HHh--Cc----cHHhHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 11111122 211 11 245677789999998875321 111222234445554441 246766653210
Q ss_pred -------CCCCccchhhcc-HHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhccc-C--------------CCC
Q 001147 462 -------DDNGEFNYLQAS-ISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGR-G--------------MID 518 (1140)
Q Consensus 462 -------~e~d~~e~~~~d-~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~-~--------------~~~ 518 (1140)
+|.|++++.+++ ....++..+.+-.+++..|..+..++.+.+.+......... + +..
T Consensus 417 ~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 496 (1204)
T 3a6p_A 417 PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVF 496 (1204)
T ss_dssp THHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSS
T ss_pred cchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcC
Confidence 011111111122 23446677888889999999999888888866543211100 0 000
Q ss_pred CchhHHHHHHHHHHHhhHhccCCCC-CccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHH
Q 001147 519 PTETLEELYSLLLITGHVLADEGEG-EIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLME 597 (1140)
Q Consensus 519 ~~~~~E~L~Wli~i~g~~l~~~~~g-e~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~ 597 (1140)
+ ..|....-.+..+++++.+-.++ |.+-+|. .+...++..+-. + +. -.|.+..
T Consensus 497 s-~~~~~~ea~~~~leav~~~~~~~~e~~~l~~------------------~~~~~Ll~~ll~-~--~~----~~p~l~~ 550 (1204)
T 3a6p_A 497 S-PSFVQWEAMTLFLESVITQMFRTLNREEIPV------------------NDGIELLQMVLN-F--DT----KDPLILS 550 (1204)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCH------------------HHHHHHHHHHHH-C--CC----SCHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHHHHhcccccccccH------------------HHHHHHHHHHHh-C--CC----CChHHHH
Confidence 1 11111111223333332111000 0000110 123334443210 1 11 2577888
Q ss_pred HHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCC-CchhHH
Q 001147 598 AIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYP-GEKDLQ 676 (1140)
Q Consensus 598 ~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~-~e~~vi 676 (1140)
+.+.++++|.. |+. . + ..++..|...++..++....+. .-..++ +..++.
T Consensus 551 ~~i~~l~~l~~-~~~---~-~------------p~~L~~vL~~ll~~l~~~~~~~------------~~~~~~~~~k~vr 601 (1204)
T 3a6p_A 551 CVLTNVSALFP-FVT---Y-R------------PEFLPQVFSKLFSSVTFETVEE------------SKAPRTRAVRNVR 601 (1204)
T ss_dssp HHHHHHHHHGG-GGG---T-C------------GGGHHHHHHHHHHHHHCCTTCS------------TTSCCCHHHHHHH
T ss_pred HHHHHHHHHHH-HHh---c-C------------chHHHHHHHHHHHhhccCCccc------------ccccccHHHHHHH
Confidence 88888888864 663 1 1 1122222333332222100000 000001 123455
Q ss_pred HHHHHHHHHHHhhccccchhhhccchHHHHHHHhhchhhhhc-ccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHH
Q 001147 677 ELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLIL-LNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHA 755 (1140)
Q Consensus 677 ~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl 755 (1140)
..++ ..|..|+.... ..| .|.+..+.+.+..-..-.. ++.+-+..+|++++.++....+.+....|++.++.|+
T Consensus 602 ~~a~-~al~~L~~~~~--~~L--~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~ 676 (1204)
T 3a6p_A 602 RHAC-SSIIKMCRDYP--QLV--LPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPV 676 (1204)
T ss_dssp HHHH-HHHHHHHHHCH--HHH--GGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhh--HHH--HHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 5555 66776665431 122 3566666554321111112 5566677899999887433345556677799999999
Q ss_pred HHHHHH
Q 001147 756 TAYLVE 761 (1140)
Q Consensus 756 ~~~~~~ 761 (1140)
.++|.+
T Consensus 677 ~~~w~~ 682 (1204)
T 3a6p_A 677 ASIWLS 682 (1204)
T ss_dssp HHHHSC
T ss_pred HHHHcc
Confidence 988873
No 8
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.87 E-value=4.6e-22 Score=215.93 Aligned_cols=285 Identities=15% Similarity=0.197 Sum_probs=218.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhccccccccc----hhhhHHHHHHHHHHHhhhcccCc--------------
Q 001147 811 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQ----ETNIVIDFCTRLLQLYSSHNIGK-------------- 872 (1140)
Q Consensus 811 ~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~~----~~~~Lf~~~~~ll~~y~~~~~~~-------------- 872 (1140)
..++.+++++|..+++.+. +.+...|...... ..+.+.|++++++++|.+.....
T Consensus 5 ~~iy~dml~lY~~~S~~Is-------~~va~~G~~~~k~~~vr~lR~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~ 77 (321)
T 1w9c_A 5 GRIYLDMLNVYKCLSENIS-------AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDA 77 (321)
T ss_dssp GGGHHHHHHHHHHHHHHHH-------HHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678899999999998754 6666566554442 23789999999999999764321
Q ss_pred cccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHH
Q 001147 873 MLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDY 952 (1140)
Q Consensus 873 ~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~f 952 (1140)
+..+|+.+.+...++|.+..+..+++-+.+.+.+.. ..+.+ ..+++++.||++|+.+||++|.+|
T Consensus 78 VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~v------------p~Il~---~VFe~TL~MI~~df~eyPehR~~F 142 (321)
T 1w9c_A 78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEI------------PQIFD---AVFECTLNMINKDFEEYPEHRTNF 142 (321)
T ss_dssp HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGH------------HHHHH---HHHHHHHHHHSSTTTCSHHHHHHH
T ss_pred HHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhH------------HHHHH---HHHHHHHHHHhcccccChHHHHHH
Confidence 136788888888999999988888888776665543 23344 555999999999999999999999
Q ss_pred HHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchh----------h
Q 001147 953 FSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAA----------Q 1022 (1140)
Q Consensus 953 f~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~----------~ 1022 (1140)
|+|++.+++.|+..+.++|+++|+.+++|+.||++|.+++|++.|++++..+...+.+.......++.. .
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~ 222 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFS 222 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998886421111122221 1
Q ss_pred hhc-cCCCCC-CCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 001147 1023 AAG-INNSNG-NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANA 1100 (1140)
Q Consensus 1023 ~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~a 1100 (1140)
++| ..|.++ ..|..+|.++++++.+..+..+... . + | -.|.++.++++.+++.+..+....+++...
T Consensus 223 VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~----~-~-~-----~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~f 291 (321)
T 1w9c_A 223 VVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNP----G-N-P-----VNNQIFLQEYVANLLKSAFPHLQDAQVKLF 291 (321)
T ss_dssp HHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCS----S-S-C-----CCHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHhCchhhccHHHHHHHHHHHHHHHHcCccccccCC----C-C-C-----cccHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 355 777765 6667777777777776544333311 1 0 1 046788999999999776324778899999
Q ss_pred HHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhc
Q 001147 1101 LQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGF 1136 (1140)
Q Consensus 1101 f~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~ 1136 (1140)
...|++. ..+..+|+.+++||++++|+|
T Consensus 292 v~glf~~--------~~d~~~Fk~~lrDFLIqiKEf 319 (321)
T 1w9c_A 292 VTGLFSL--------NQDIPAFKEHLRDFLVQIKEF 319 (321)
T ss_dssp HHHHHHT--------TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHc--------cCCHHHHHHHHHHHHHHHHHh
Confidence 9999873 367889999999999999987
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.77 E-value=4.1e-14 Score=182.50 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=117.7
Q ss_pred CChHHHHHHHHhhccCCCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCCh
Q 001147 3 VNPAAAEATILGLCQSPQPYKACQFILE--NSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPE 80 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~--~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~ 80 (1140)
+.|++||+.|.+++++|+.+..+..|+. .+.++.++++|+..||+.+.++|..+++++|..||+.+++.+. +.+
T Consensus 28 ~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~----~~~ 103 (852)
T 4fdd_A 28 TIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG----DSS 103 (852)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT----CSS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc----CCC
Confidence 4699999999999999999999999999 5788899999999999999999999999999999999999753 345
Q ss_pred hHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCC
Q 001147 81 GYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 143 (1140)
Q Consensus 81 ~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~ 143 (1140)
+.||+++..+++.|.+++|++ .|+.++..+.+.+.+ +++..+..++..|..+..++..
T Consensus 104 ~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 104 PLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHH
Confidence 789999999999999998765 788999999999875 4677888899999999988754
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.53 E-value=4.7e-09 Score=136.79 Aligned_cols=127 Identities=12% Similarity=0.166 Sum_probs=113.9
Q ss_pred HHHHHHhhccCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccC------ccCHHHHHHHHHHHHHHHHhcCCCCh
Q 001147 8 AEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWS------FLTADEKKSLIGFCLCFVMQHASSPE 80 (1140)
Q Consensus 8 Ae~~l~~f~~~~~~~~~c~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~------~l~~~~k~~lr~~ll~~l~~~~~~~~ 80 (1140)
||+.|.+++++|+.|..+..|+.+. ....++++|+..||+.|.++|. .+++++|..||+.+++.+..- +
T Consensus 23 Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~----~ 98 (960)
T 1wa5_C 23 SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL----P 98 (960)
T ss_dssp HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS----C
T ss_pred HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC----C
Confidence 9999999999999999999999665 4579999999999999999998 899999999999999998763 4
Q ss_pred hHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCC
Q 001147 81 GYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 143 (1140)
Q Consensus 81 ~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~ 143 (1140)
+.|+++++.+++.|.+.+|++ .|++++.++.+.+.+ +++....-++.+|..++.++..
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~----~Wp~ll~~L~~~l~s-~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHHhhCcc----chhHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999986 799999999999875 4667778899999999887754
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.41 E-value=3.1e-08 Score=127.57 Aligned_cols=177 Identities=12% Similarity=0.075 Sum_probs=135.7
Q ss_pred CChHHHHHHHHhhccC--CCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhc-----------cCc-cCHHHHHHHHHH
Q 001147 3 VNPAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAMRE-----------WSF-LTADEKKSLIGF 67 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~--~~~~~~c~~iL~~S-~~~~~~f~a~~~L~~~i~~~-----------W~~-l~~~~k~~lr~~ 67 (1140)
+.|++||+.|.+++++ |+.|..+..+|.++ .++.++++|+..|++.+.++ |.. +++++|..||+.
T Consensus 20 ~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ 99 (861)
T 2bpt_A 20 NIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTN 99 (861)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHH
Confidence 3589999999999986 88999999999876 57899999999999998765 575 999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCC
Q 001147 68 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSS 147 (1140)
Q Consensus 68 ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss 147 (1140)
+++.+.. .++.++++++++++.|.+.+|+.. .|+.++..+.+.+.+..++..+..++.+|..+..++...
T Consensus 100 ll~~l~~----~~~~vr~~~~~~l~~i~~~~~p~~---~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~--- 169 (861)
T 2bpt_A 100 ALTALVS----IEPRIANAAAQLIAAIADIELPHG---AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ--- 169 (861)
T ss_dssp HHHHHTC----SSHHHHHHHHHHHHHHHHHHGGGT---CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTT---
T ss_pred HHHHHCC----CchHHHHHHHHHHHHHHHhhCccc---ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChh---
Confidence 9998632 357889999999999999998842 689999999999875226778888999999999987643
Q ss_pred CCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccc
Q 001147 148 AMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 212 (1140)
Q Consensus 148 ~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 212 (1140)
.. .+. .....|+......+.. + ..+..+-..+++++..++.|
T Consensus 170 -~~-----------~~~-~~~~~ll~~l~~~l~~--------~--~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 170 -SQ-----------ALV-SSSNNILIAIVQGAQS--------T--ETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp -SS-----------TTG-GGHHHHHHHHHHHHST--------T--CCCHHHHHHHHHHHHHHGGG
T ss_pred -hh-----------HHH-HHHHHHHHHHHHhhcC--------C--CCCHHHHHHHHHHHHHHHHH
Confidence 10 122 2345555544333311 0 01345677888998888765
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.08 E-value=1.9e-05 Score=101.58 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=109.7
Q ss_pred CChHHHHHHHHhhccC--CCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-----------hccCccCHHHHHHHHHHH
Q 001147 3 VNPAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIGFC 68 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~--~~~~~~c~~iL~~S-~~~~~~f~a~~~L~~~i~-----------~~W~~l~~~~k~~lr~~l 68 (1140)
+.|++|++.|.++.++ |+.+..+..+|..+ .++.++.+|+.+|++.+. ++|..++++.|..||+.+
T Consensus 16 ~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~l 95 (876)
T 1qgr_A 16 LELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYV 95 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHH
Confidence 3599999999999987 88888888888876 468999999999999874 679999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccC-ChhhHHHHHHHHHHHHhhhC
Q 001147 69 LCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINFLESLVSEFS 142 (1140)
Q Consensus 69 l~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gl~lL~~lv~efs 142 (1140)
++.+.. .+..+ ++++++++.|.+..|+. ..|+.+++.+.+.+.+.. ++.....++..|..++.++.
T Consensus 96 l~~l~~----~~~~~-~~~~~~l~~i~~~~~~~---~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (876)
T 1qgr_A 96 LHTLGT----ETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (876)
T ss_dssp HHHTTT----CCSSS-CHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCC----CcHHH-HHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 997633 23445 89999999999988763 268889999999887522 56778889999999998763
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.64 E-value=1.2e-05 Score=94.94 Aligned_cols=132 Identities=12% Similarity=0.099 Sum_probs=111.6
Q ss_pred CChHHHHHHHHhhcc--CCCcHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhc-----------cCccCHHHHHHHHHHH
Q 001147 3 VNPAAAEATILGLCQ--SPQPYKACQFILENSQ-VANARFQAAAAIRDAAMRE-----------WSFLTADEKKSLIGFC 68 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~--~~~~~~~c~~iL~~S~-~~~~~f~a~~~L~~~i~~~-----------W~~l~~~~k~~lr~~l 68 (1140)
+.|++||+.|.++++ .|+.+..+..+|.+++ ++.++..|+..|++.+.++ |..+++++|..||+.+
T Consensus 16 ~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~l 95 (462)
T 1ibr_B 16 LELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYV 95 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 358999999999998 4888998999998874 6799999999999999776 6889999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccC-ChhhHHHHHHHHHHHHhhhC
Q 001147 69 LCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINFLESLVSEFS 142 (1140)
Q Consensus 69 l~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gl~lL~~lv~efs 142 (1140)
++.+.. .++.+ ++++.+++.|.+..|++ ..|+.++..+.+.+.+.. ++..+..++..|..++.++.
T Consensus 96 l~~l~~----~~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 96 LQTLGT----ETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp HHHTTC----CCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCC----CCchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 997633 23556 89999999999998875 268889999999987521 67788899999999998874
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.39 E-value=37 Score=42.61 Aligned_cols=380 Identities=13% Similarity=0.085 Sum_probs=179.7
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHH
Q 001147 655 LDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLS 734 (1140)
Q Consensus 655 l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~ 734 (1140)
+..++..+...+.. .++.|-..++ ..+..++...... ...+....++..... .+..-.+..|..-..+++.+
T Consensus 398 l~~~l~~l~~~l~d--~~~~Vr~~a~-~~l~~l~~~~~~~---~~~~~~~~ll~~L~~--~L~d~~~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 398 LPELIPHLIQCLSD--KKALVRSITC-WTLSRYAHWVVSQ---PPDTYLKPLMTELLK--RILDSNKRVQEAACSAFATL 469 (852)
T ss_dssp HHHHHHHHHHHTTC--SSHHHHHHHH-HHHHHTHHHHHHS---CTTTTHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CCHHHHHHHH-HHHHHHHHHhccc---hHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 45555555555543 2344444444 5666555421110 011223333332211 01011345566666666655
Q ss_pred HhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHH
Q 001147 735 AYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPV 814 (1140)
Q Consensus 735 ~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~ 814 (1140)
.....+ .-..|+..++..+...++.. + .+.. .-+++.+..++.+.+..... -+++...+|.+
T Consensus 470 ~~~~~~--~l~~~l~~ll~~L~~~l~~~----------~-~~~~---~~~~~ai~~l~~~~~~~~~~--~~~~~~l~p~l 531 (852)
T 4fdd_A 470 EEEACT--ELVPYLAYILDTLVFAFSKY----------Q-HKNL---LILYDAIGTLADSVGHHLNK--PEYIQMLMPPL 531 (852)
T ss_dssp HHHHGG--GGGGGHHHHHHHHHHHHHHC----------C-HHHH---HHHHHHHHHHHHHHGGGGCC--HHHHHHHHHHH
T ss_pred HHHhhH--hhHhHHHHHHHHHHHHHHHh----------C-hHHH---HHHHHHHHHHHHHhhhhhcc--HHHHHHHHHHH
Confidence 432221 23446677776665554321 1 1111 12334444444444422100 12233335555
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHhhhcccCccccccccccccchhhhhhhhH
Q 001147 815 LLLLEVYK-HESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDL 893 (1140)
Q Consensus 815 ~~ll~~y~-~~~~v~~~iL~l~~e~v~~~~~~l~~~~~~~Lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l 893 (1140)
....+... +++++ ..+++.+..++...+..+.+ ....+|..+.++++.+...... ....+. .....+.+.....
T Consensus 532 ~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~-~~~~i~~~~~~~l~~~l~~~~~--~~~~~~-~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 532 IQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLP-YCEPVYQRCVNLVQKTLAQAML--NNAQPD-QYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHHHHHHHHHH--HHHCTT-TSCCCCTHHHHHH
T ss_pred HHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHHHHHHHHH--hhcCCc-ccCCCcchHHHHH
Confidence 54444433 34554 57777777777765543322 3445666677666654211000 000000 0001122333322
Q ss_pred HHHHHHHHHhhcCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHH
Q 001147 894 RALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTE 973 (1140)
Q Consensus 894 ~~ll~lL~~~l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~ 973 (1140)
.-.+..+...+.+++.++- ..+. ....+ +-.+ .| ..|+++...|.++..++..+++.+..
T Consensus 607 l~~l~~l~~~l~~~~~~~~---~~~~---~~~~l-------~~~l-~~--~~~~vr~~a~~~l~~l~~~~~~~~~~---- 666 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLV---ARSN---ILTLM-------YQCM-QD--KMPEVRQSSFALLGDLTKACFQHVKP---- 666 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHH---HTCC---HHHHH-------HHHT-TC--SSHHHHHHHHHHHHHHHHHCGGGTGG----
T ss_pred HHHHHHHHHHHhHhHHHHh---cCCc---HHHHH-------HHHh-CC--CChhHHHHHHHHHHHHHHHhhHHHHH----
Confidence 2333444444443332110 0000 01111 1111 11 35899999999999999998876543
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhcc
Q 001147 974 AFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFED 1053 (1140)
Q Consensus 974 ~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~ 1053 (1140)
.+..++..+..++...+.++...++.++..++..+..+. .+ +...++..+++++- ..+
T Consensus 667 ~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~-------~p-----------~~~~il~~L~~~l~----~~~ 724 (852)
T 4fdd_A 667 CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM-------QP-----------YIPMVLHQLVEIIN----RPN 724 (852)
T ss_dssp GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGG-------GG-----------GTHHHHHHHHHHHT----CSS
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhH-------HH-----------HHHHHHHHHHHHhC----CCC
Confidence 255677777888888889999999999999987763211 11 11233433333221 112
Q ss_pred CCCchHHHhhhhHHHHHhcCHHHH----HHHHHHHHHhC---CCchhHHHHHHHHHHhhcC
Q 001147 1054 YSPDMVGTAADALFPLILCEPRLY----QRLGSELIERQ---ANPPFKSRLANALQSLTSS 1107 (1140)
Q Consensus 1054 ~~~~~~~~~s~~l~~Li~~~~~~f----~~~~~~li~~q---~~~~~~~~l~~af~~L~~~ 1107 (1140)
......+.+..++--|...+|+.. .+++..+++.- .|...+...-..|..+...
T Consensus 725 ~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 725 TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 333455666777777776666543 34444444332 2344556666666666553
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=71.05 E-value=1.2e+02 Score=39.71 Aligned_cols=132 Identities=9% Similarity=0.015 Sum_probs=88.3
Q ss_pred CChHHHHHHHHhhccCC----------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHH
Q 001147 3 VNPAAAEATILGLCQSP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFV 72 (1140)
Q Consensus 3 ~~r~~Ae~~l~~f~~~~----------~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l 72 (1140)
+.|.+|..-|.+.-+.+ .-+..+...|. ++++.++-.|+.+|...+.. ++.+.+..+++.+++-+
T Consensus 21 ~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~----~~~~~~~~i~~~Ll~~l 95 (1230)
T 1u6g_C 21 DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK----VKEYQVETIVDTLCTNM 95 (1230)
T ss_dssp HHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHh
Confidence 34888877776654433 12333444454 67889999999999887753 67766666666666643
Q ss_pred HhcCCCChhHHHHHHHHHHHHHhHhccccC-----CCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCC
Q 001147 73 MQHASSPEGYVQAKISSVAAQLMKRGWLDF-----TSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 143 (1140)
Q Consensus 73 ~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~ 143 (1140)
.+....||...+.+++.|.+.-..+. ....|+.++..+.+.+....++....-++.+|..++..+..
T Consensus 96 ----~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 96 ----LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp ----TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred ----cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 23456789999999999987544331 01136677777777776323567888899999999987754
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=69.55 E-value=2.2e+02 Score=35.16 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 001147 947 KLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYH 1008 (1140)
Q Consensus 947 kl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~ 1008 (1140)
.++...+..+..+++...+.+. ..+..++..+..++++.+.++...++.++..++..+
T Consensus 613 ~v~~~~~~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 613 FIEDDVFYAISALAASLGKGFE----KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 6788888888888876555432 345667777777778888889999999988888654
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=50.24 E-value=1.3e+02 Score=29.58 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=63.9
Q ss_pred CCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHH-----HHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001147 18 SPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-----IGFCLCFVMQHASSPEGYVQAKISSVAA 92 (1140)
Q Consensus 18 ~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~l-----r~~ll~~l~~~~~~~~~~v~~~l~~~~a 92 (1140)
.+..++....+| +|.++.++..|+.+|.+.... +.+.+..+ ...+++++ ......++...+.++.
T Consensus 10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~ 79 (210)
T 4db6_A 10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLL----SSPNEQILQEALWALS 79 (210)
T ss_dssp ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHH----cCCCHHHHHHHHHHHH
Confidence 344666666667 467899999999999998633 23333333 23444443 2235678888888888
Q ss_pred HHhHhccccCCCCch-----hHHHHHHHHHhcccCChhhHHHHHHHHHHHH
Q 001147 93 QLMKRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLV 138 (1140)
Q Consensus 93 ~i~K~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv 138 (1140)
.+.... +..+ ...++-+.+++.+ +++..+..++..|..+.
T Consensus 80 ~l~~~~-----~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 80 NIASGG-----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 124 (210)
T ss_dssp HHTTSC-----HHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHT
T ss_pred HHhcCC-----cHHHHHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHH
Confidence 887311 1011 1245566677764 35677777888887775
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=49.36 E-value=85 Score=31.82 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=73.8
Q ss_pred hHHHHHHHHhhccCC----------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHH-HHHHHHH
Q 001147 5 PAAAEATILGLCQSP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVM 73 (1140)
Q Consensus 5 r~~Ae~~l~~f~~~~----------~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~-~ll~~l~ 73 (1140)
|..|-..|.++.... ..++....+|.. .++.++..|+.+|.+..... ++.+..+.+ -.+..++
T Consensus 19 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~ 92 (252)
T 4hxt_A 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEVLV 92 (252)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHCCCHHHHH
Confidence 556666677765543 355666666654 45899999999998886431 333333321 1333333
Q ss_pred hcCCCChhHHHHHHHHHHHHHhHhccccCCCCch-----hHHHHHHHHHhcccCChhhHHHHHHHHHHHH
Q 001147 74 QHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLV 138 (1140)
Q Consensus 74 ~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv 138 (1140)
+.-.+...-++...+.+++.+.... .+ .+ ...++.+.+++.+ +++..+..++..|..+.
T Consensus 93 ~ll~~~~~~v~~~a~~~L~~l~~~~-~~----~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 93 KLLTSTDSEVQKEAARALANIASGP-DE----AIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIA 156 (252)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSC-HH----HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCC-HH----HHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 3222345778888888888887411 11 11 1356667777764 45677777888887775
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=40.38 E-value=1.6e+02 Score=29.65 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhHhccc
Q 001147 22 YKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWL 100 (1140)
Q Consensus 22 ~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~l-r~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~ 100 (1140)
++.....|..+ ++.++..|+.+|.+..... .+.+..+ +.-.+..+++.-.+...-++...+.++..+...+
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-- 75 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 75 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--
Confidence 44555566544 4889999999999987653 1233222 2223333333222334778888888888887521
Q ss_pred cCCCCch-----hHHHHHHHHHhcccCChhhHHHHHHHHHHHHh
Q 001147 101 DFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 139 (1140)
Q Consensus 101 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~ 139 (1140)
+..+ ...++-+.+++.+ +++..+..++..|..+..
T Consensus 76 ---~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 76 ---DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIAS 115 (252)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTT
T ss_pred ---hHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 1111 1356667777764 467777888888888753
No 20
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=39.00 E-value=2.6e+02 Score=28.25 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=83.5
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 001147 946 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGL-HHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA 1024 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl-~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 1024 (1140)
.+.|+.-..-+..+++.++... + ..+..++..+...+ +..+..|...++.++..|+..+... +
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~---~-~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-------~----- 92 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLE---N-GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-------F----- 92 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBC---C-CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-------G-----
T ss_pred HHHHHHHHHHHHHHHccCCCCC---C-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-------H-----
Confidence 6777777778888888777532 1 23567788888888 4899999999999999999765211 1
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHH
Q 001147 1025 GINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--ANPPFKSRLANALQ 1102 (1140)
Q Consensus 1025 ~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q--~~~~~~~~l~~af~ 1102 (1140)
......++..+++. +.+-+......+..++.+++...+ +..++..++..- .++..|........
T Consensus 93 ----------~~~~~~ilp~ll~~--l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 93 ----------SNYASACVPSLLEK--FKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp ----------HHHHHHHHHHHHHG--GGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 12344556666653 334444455667777777764322 444444444432 35666777777777
Q ss_pred Hhhc
Q 001147 1103 SLTS 1106 (1140)
Q Consensus 1103 ~L~~ 1106 (1140)
.+..
T Consensus 159 ~~l~ 162 (242)
T 2qk2_A 159 RALT 162 (242)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7544
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=37.07 E-value=2.2e+02 Score=28.71 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=67.0
Q ss_pred cCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 001147 17 QSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI-GFCLCFVMQHASSPEGYVQAKISSVAAQLM 95 (1140)
Q Consensus 17 ~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr-~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~ 95 (1140)
..+..++.....|. |.++.++..|+..|.+.+.+. .+.+..+. .-.+..+++.-.....-++...+.++..+.
T Consensus 9 ~~~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~~-----~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (252)
T 4db8_A 9 HHGSELPQMTQQLN-SDDMQEQLSATRKFSQILSDG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (252)
T ss_dssp CTTCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHHH-----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCC-----CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35567787777775 567889999999998877652 22332222 122233333211223678888888888777
Q ss_pred HhccccCCCCch-----hHHHHHHHHHhcccCChhhHHHHHHHHHHHH
Q 001147 96 KRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLV 138 (1140)
Q Consensus 96 K~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv 138 (1140)
... +..+ ...++-+.+++.+ +++..+..++..|..+.
T Consensus 83 ~~~-----~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 83 SGG-----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 124 (252)
T ss_dssp TSC-----HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred cCC-----HHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Confidence 421 1011 2256666777765 46777788888888873
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=33.61 E-value=4.4e+02 Score=33.16 Aligned_cols=68 Identities=9% Similarity=0.116 Sum_probs=52.6
Q ss_pred hccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q 001147 932 HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALAS 1006 (1140)
Q Consensus 932 ~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~ 1006 (1140)
..++|.+...--.+|-++.....++..+++. ++++.+..++..+..+|.+.+..|...++.++.+++.
T Consensus 458 ~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-------~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-------LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-------SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhHHHhcCCCCCCceehHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 3455654321013899999999999888764 2577899999999999998888899999999998774
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=27.52 E-value=1.3e+02 Score=30.66 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=64.8
Q ss_pred CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHhHhc
Q 001147 20 QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRG 98 (1140)
Q Consensus 20 ~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~ 98 (1140)
..++....+|..+ ++.++..|+.+|.+.... .++.+..+.+ -.+..+++.-.+....++...+.++..+....
T Consensus 54 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (252)
T 4db8_A 54 GALPALVQLLSSP-NEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (252)
T ss_dssp THHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence 4556666667654 488999999999988643 2334443332 13344433322235678888888888876311
Q ss_pred cccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHH
Q 001147 99 WLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 138 (1140)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv 138 (1140)
-.....-.....++.+.+++.+ +++..+..++..|..+.
T Consensus 128 ~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 128 NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 0000000012356677777764 45677777888887775
No 24
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=26.67 E-value=1e+03 Score=29.81 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=49.7
Q ss_pred cchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHHHHHHh
Q 001147 944 KYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDF--GLHHQDSEIVDMCLRALRALASYHYK 1010 (1140)
Q Consensus 944 ~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~--Gl~~~d~~I~~~~l~~l~~l~~~~~~ 1010 (1140)
.+|.++..|+.++....+... -.++.+..++..+.. |+.+.+..|...|+.++..+++.+..
T Consensus 507 ~hp~V~~~~~~~l~rys~~~~-----~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 507 PHPLVQLLYMEILVRYASFFD-----YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp CCHHHHHHHHHHHHHTGGGGG-----TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHh-----cCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 578899999888877665432 234678889999999 99999999999999999999876643
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=23.40 E-value=6e+02 Score=25.87 Aligned_cols=137 Identities=11% Similarity=0.207 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHH-HHhhChhhhhcCCHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 001147 946 PKLCHDYFSLLSH-LLEVYPETVAQLSTEAFAHVLGTLDFGL-HHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQA 1023 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~-l~e~~~~~l~~l~~~~f~~l~~sl~~Gl-~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 1023 (1140)
++-|++-..-+.. +++.+|..... ...+..+++.+.-++ +..+..|+..++++|..|++.+.. . .+.
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~--~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-----~-~f~--- 98 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKST--SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-----P-GFS--- 98 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCT--TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-----T-TSC---
T ss_pred HHHHHHHHHHHHHHHHhcCCccccC--cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-----c-ccc---
Confidence 4555556555555 66655543210 233567788888889 688889999999999999966520 0 111
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHh-cCHH----HHHHHHHHHHHhC--CCchhHHH
Q 001147 1024 AGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLIL-CEPR----LYQRLGSELIERQ--ANPPFKSR 1096 (1140)
Q Consensus 1024 ~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~-~~~~----~f~~~~~~li~~q--~~~~~~~~ 1096 (1140)
......++..+++. +.+-.......+..++-+++. ++|. +...++..++..- +++..|+.
T Consensus 99 -----------~~y~~~llp~ll~~--l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~ 165 (249)
T 2qk1_A 99 -----------KDYVSLVFTPLLDR--TKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRME 165 (249)
T ss_dssp -----------HHHHHHHHHHHHHG--GGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHH
T ss_pred -----------HHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHH
Confidence 02233445555553 234333344555666666653 3210 1223333333321 24566666
Q ss_pred HHHHHHHhhc
Q 001147 1097 LANALQSLTS 1106 (1140)
Q Consensus 1097 l~~af~~L~~ 1106 (1140)
...++..+..
T Consensus 166 al~~l~~~~~ 175 (249)
T 2qk1_A 166 CTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 26
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=22.99 E-value=1.1e+03 Score=29.73 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=79.0
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCC--HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 001147 946 PKLCHDYFSLLSHLLEVYPETVAQLS--TEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQA 1023 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~~~~l~~l~--~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 1023 (1140)
++..+++.+++..+.+.+.+.+..-+ .+.+..++..+.....+.+.+|+..|+++...++.+.++. . ...
T Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~--~---~~~--- 382 (1049)
T 3m1i_C 311 QSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE--P---LKK--- 382 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHS--T---TCG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc--h---hHH---
Confidence 34455566666666665555543311 3445667777776677889999999999999999876431 0 101
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchH---------------------HHhhhhHHHHHhcCHHHHHHHHH
Q 001147 1024 AGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMV---------------------GTAADALFPLILCEPRLYQRLGS 1082 (1140)
Q Consensus 1024 ~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~---------------------~~~s~~l~~Li~~~~~~f~~~~~ 1082 (1140)
.....++.+++..++..+.+.+ +.+|. ..++++|..+....++....++.
T Consensus 383 --------~~~~~~l~~Lv~~ll~~m~~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~ 453 (1049)
T 3m1i_C 383 --------HIYEEICSQLRLVIIENMVRPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMI 453 (1049)
T ss_dssp --------GGGHHHHHHHHHHHHHTCCCCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhcCCCc-ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 0113567777777777654421 11121 13566777777666655444444
Q ss_pred HHHHhC-----CCchhHHHHHHHHHHh
Q 001147 1083 ELIERQ-----ANPPFKSRLANALQSL 1104 (1140)
Q Consensus 1083 ~li~~q-----~~~~~~~~l~~af~~L 1104 (1140)
+.+.+. ++...++...-++..+
T Consensus 454 ~~l~~~l~~~~~~W~~~eaal~algsi 480 (1049)
T 3m1i_C 454 SKLARQIDGSEWSWHNINTLSWAIGSI 480 (1049)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 443321 2223444444444444
No 27
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=20.32 E-value=2.8e+02 Score=28.87 Aligned_cols=108 Identities=8% Similarity=0.055 Sum_probs=61.6
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCC
Q 001147 977 HVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSP 1056 (1140)
Q Consensus 977 ~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~ 1056 (1140)
.+++.+.-|+++-.+.+...|+..|..+...+... ... ....+..++..+.. ++++.+.
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~------~~~-------------~k~~l~~i~~~l~k--~l~d~~~ 197 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT------NVN-------------VQTFLPELLKHVPQ--LAGHGDR 197 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT------TCC-------------HHHHHHHHGGGHHH--HHTCSSH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC------cCC-------------chhHHHHHHHHHHH--HHhCCcH
Confidence 34677788999999999999999999988765311 000 01234444544443 3467776
Q ss_pred chHHHhhhhHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhc
Q 001147 1057 DMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTS 1106 (1140)
Q Consensus 1057 ~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~af~~L~~ 1106 (1140)
+.-..+-..+..+...-.+........++.... |..+..|.+.|.+.-.
T Consensus 198 ~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lk-p~~~k~le~~f~k~~~ 246 (278)
T 4ffb_C 198 NVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLK-PIQVKDLHKLFAKVGD 246 (278)
T ss_dssp HHHHHHHHHHHHHHTC-----------CTTSSC-HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCC-HHHHHHHHHHHHhcCC
Confidence 655555555545433333333333344445444 7788889999988743
No 28
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=20.15 E-value=1.2e+03 Score=28.17 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHH
Q 001147 946 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQ-DSEIVDMCLRALRALASYH 1008 (1140)
Q Consensus 946 Pkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~-d~~I~~~~l~~l~~l~~~~ 1008 (1140)
+.++...+.++..+++.....+. ..+..++..+..++... +.+|...++.++..++..+
T Consensus 622 ~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 622 GGVQEDALMAVSTLVEVLGGEFL----KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGG----GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 46778888888888876544432 22445666677777766 7889999999999988665
Done!