BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001148
(1139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 37/201 (18%)
Query: 417 LLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHR---KNSVNCSIALQ 473
L++ +++L+ DL+DG L ++++L DS +P + R N IAL
Sbjct: 86 LIKAQRHISDLYEDLRDGHNLISLLEVLSGDS-------LPREKGRMRFHKLQNVQIALD 138
Query: 474 YLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIR 533
YLR VKL + I DD+A+G+ +L L L+W + +H Q+ ++
Sbjct: 139 YLRHRQVKLVN-----IRNDDIADGNPKLTLGLIWTIILHFQI-----------SDIQVS 182
Query: 534 GTNMDNLNIFDSALLDLLLNWIQVICEKYD-FRINNF-SSLTDGKAIWCLLDFYFRKEPC 591
G + D +A LLL W Q + E Y R +NF SS DG+ ++ R +P
Sbjct: 183 GQSEDM-----TAKEKLLL-WSQRMVEGYQGLRCDNFTSSWRDGRLFNAII---HRHKPL 233
Query: 592 GSCTSKVLQMSDILEHNGACS 612
+KV + +++ + A S
Sbjct: 234 LIDMNKVYRQTNLENLDQAFS 254
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 424 VTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHR---KNSVNCSIALQYLRQAGV 480
+++L+ DL+DG L ++++L DS +P + R N IAL YLR V
Sbjct: 40 ISDLYEDLRDGHNLISLLEVLSGDS-------LPREKGRMRFHKLQNVQIALDYLRHRQV 92
Query: 481 KLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNL 540
KL + I DD+A+G+ +L L L+W + +H Q+ ++ G + D
Sbjct: 93 KLVN-----IRNDDIADGNPKLTLGLIWTIILHFQI-----------SDIQVSGQSEDM- 135
Query: 541 NIFDSALLDLLLNWIQVICEKYD-FRINNF-SSLTDGKAIWCLLDFYFRKEPCGSCTSKV 598
+A LLL W Q + E Y R +NF SS DG+ ++ R +P +KV
Sbjct: 136 ----TAKEKLLL-WSQRMVEGYQGLRCDNFTSSWRDGRLFNAII---HRHKPLLIDMNKV 187
Query: 599 LQMSDILEHNGACS 612
+ +++ + A S
Sbjct: 188 YRQTNLENLDQAFS 201
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 424 VTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHR---KNSVNCSIALQYLRQAGV 480
+++L+ DL+DG L ++++L DS +P + R N IAL YLR V
Sbjct: 37 ISDLYEDLRDGHNLISLLEVLSGDS-------LPREKGRMRFHKLQNVQIALDYLRHRQV 89
Query: 481 KLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNL 540
KL + I DD+A+G+ +L L L+W + +H Q+ ++ G + D
Sbjct: 90 KLVN-----IRNDDIADGNPKLTLGLIWTIILHFQI-----------SDIQVSGQSEDM- 132
Query: 541 NIFDSALLDLLLNWIQVICEKYD-FRINNF-SSLTDGKAIWCLLDFYFRKEPCGSCTSKV 598
+A LLL W Q + E Y R +NF +S DG+ ++ R +P +KV
Sbjct: 133 ----TAKEKLLL-WSQRMVEGYQGLRCDNFTTSWRDGRLFNAII---HRHKPMLIDMNKV 184
Query: 599 LQMSDILEHNGACS 612
+ +++ + A S
Sbjct: 185 YRQTNLENLDQAFS 198
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 26/164 (15%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYLRQAGVK 481
R+ NL DL DG+RL ++++L Q P T R+ + N S+AL++L + +K
Sbjct: 36 RIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP--TFRQMQLENVSVALEFLDRESIK 93
Query: 482 LYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLN 541
L D AI+ +G+ +LIL L+W + +H + + + + ++ K
Sbjct: 94 LVSIDSKAIV-----DGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQR---- 144
Query: 542 IFDSALLDLLLNWIQVICEKYDF-RINNFS-SLTDGKAIWCLLD 583
LL WIQ K + I NF+ + DGKA+ L+D
Sbjct: 145 ---------LLGWIQ---NKIPYLPITNFNQNWQDGKALGALVD 176
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYLRQAGVK 481
R+ NL DL DG+RL ++++L Q P T R+ + N S+AL++L + +K
Sbjct: 46 RIGNLQTDLSDGLRLIALLEVLSQKRXYRKYHQRP--TFRQXQLENVSVALEFLDRESIK 103
Query: 482 LYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQL 516
L D AI++ G+ +LIL L+W + +H +
Sbjct: 104 LVSIDSKAIVD-----GNLKLILGLVWTLILHYSI 133
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 26/164 (15%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYLRQAGVK 481
R+ NL DL DG+RL ++++L Q P T R+ + N S+AL++L + +K
Sbjct: 39 RIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP--TFRQMQLENVSVALEFLDRESIK 96
Query: 482 LYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLN 541
L D AI+ +G+ +LIL L+W + +H + + + + ++ K
Sbjct: 97 LVSIDSKAIV-----DGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQR---- 147
Query: 542 IFDSALLDLLLNWIQVICEKYDF-RINNFS-SLTDGKAIWCLLD 583
LL WIQ K + I NF+ + DGKA+ L+D
Sbjct: 148 ---------LLGWIQ---NKIPYLPITNFNQNWQDGKALGALVD 179
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 31/188 (16%)
Query: 424 VTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLY 483
+ + F DL+DG +L +++ L S L K + H N+VN LQ L Q V+L
Sbjct: 23 INDXFTDLKDGRKLLDLLEGLTGTS--LPKERGSTRVHALNNVN--RVLQVLHQNNVELV 78
Query: 484 DEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIF 543
+ GT D+ +G+ +L L LLW++ +H Q+ K + ++ TN +
Sbjct: 79 NIGGT-----DIVDGNHKLTLGLLWSIILHWQV-----KDVXKDVXSDLQQTNSEK---- 124
Query: 544 DSALLDLLLNWIQVICEKYD-FRINNF-SSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQM 601
+LL+W++ Y + NF +S TDG A +L R +P KV++
Sbjct: 125 ------ILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLH---RHKPDLFSWDKVVKX 175
Query: 602 SDI--LEH 607
S I LEH
Sbjct: 176 SPIERLEH 183
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 26/164 (15%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYLRQAGVK 481
R+ NL DL DG+RL ++++L Q P T R+ + N S+AL++L + +K
Sbjct: 39 RIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP--TFRQMQLENVSVALEFLDRESIK 96
Query: 482 LYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLN 541
L D AI+ +G+ +LIL L+W + +H + + + + ++ K
Sbjct: 97 LVSIDSKAIV-----DGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQR---- 147
Query: 542 IFDSALLDLLLNWIQVICEKYDF-RINNFS-SLTDGKAIWCLLD 583
LL WIQ K + I NF+ + DGKA+ L+D
Sbjct: 148 ---------LLGWIQ---NKIPYLPITNFNQNWQDGKALGALVD 179
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 26/101 (25%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV----------NCSIAL 472
R+ NL DL DG+RL ++++L Q HRK++ N S+AL
Sbjct: 63 RIANLQTDLSDGLRLIALLEVLSQKK-----------MHRKHNQRPTFRQMQLENVSVAL 111
Query: 473 QYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVH 513
++L + +KL D AI++ G+ +LIL L+W + +H
Sbjct: 112 EFLDRESIKLVSIDSKAIVD-----GNLKLILGLIWTLILH 147
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYLRQAGVK 481
R+ NL DL DG+RL ++++L Q P T R+ + N S+AL++L + +K
Sbjct: 66 RIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRP--TFRQMQLENVSVALEFLDRESIK 123
Query: 482 LYDEDGTAIMEDDVANGDKELILSLLWNMFVH 513
L D AI++ G+ +LIL L+W + +H
Sbjct: 124 LVSIDSKAIVD-----GNLKLILGLIWTLILH 150
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYLRQAGVK 481
R+ NL DL DG+RL ++++L Q P T R+ + N S+AL++L + +K
Sbjct: 66 RIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRP--TFRQMQLENVSVALEFLDRESIK 123
Query: 482 LYDEDGTAIMEDDVANGDKELILSLLWNMFVH 513
L D AI++ G+ +LIL L+W + +H
Sbjct: 124 LVSIDSKAIVD-----GNLKLILGLIWTLILH 150
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSV-NCSIALQYLRQAGVK 481
R+ NL DL DG+RL ++++L Q P T R+ + N S+AL++L + +K
Sbjct: 39 RIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP--TFRQMQLENVSVALEFLDRESIK 96
Query: 482 LYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMI 520
L D AI+ +G+ +LIL L+W + +H + + +
Sbjct: 97 LVSIDSKAIV-----DGNLKLILGLVWTLILHYSISMPV 130
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 26/161 (16%)
Query: 424 VTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLY 483
+ NLF DLQDG RL +++ L L K + H N+VN AL+ L+ V L
Sbjct: 37 IENLFSDLQDGRRLLDLLEGLT--GQKLPKEKGSTRVHALNNVNK--ALRVLQNNNVDLV 92
Query: 484 DEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIF 543
+ I D+ +G+ +L L L+WN+ +H Q+ K + + ++ TN +
Sbjct: 93 N-----IGSTDIVDGNHKLTLGLIWNIILHWQV-----KNVMKNIMAGLQQTNSEK---- 138
Query: 544 DSALLDLLLNWIQVICEKY-DFRINNF-SSLTDGKAIWCLL 582
+LL+W++ Y + NF +S +DG A+ L+
Sbjct: 139 ------ILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALI 173
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 881 KNVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARK 930
+N + L+ +IIIQ H+RGW AR ++ IV +Q +R +A++
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 892 SAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLAR 929
+ I IQ IRGW R++ + + + IQ Y RG AR
Sbjct: 770 ACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Query: 995 EKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYP-HLIDVLIDSQGSVQTI 1053
+ +V AG V+ L+KL+ S D EV K A L N+A P I ++D+ G V+ +
Sbjct: 122 KAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVL 175
Query: 1054 MWELVRNKEEGYFIAAEILNKICS----------THKGVEAISKL 1088
+ L E AA L I S GVE + KL
Sbjct: 176 VKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKL 220
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 995 EKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYP-HLIDVLIDSQGSVQTI 1053
+ +V AG V+ L+KL+ S D EV K A L N+A P I ++D+ G V+ +
Sbjct: 38 KAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVL 91
Query: 1054 MWELVRNKEEGYFIAAEILNKICS 1077
+ L E AA L I S
Sbjct: 92 VKLLTSTDSEVQKEAARALANIAS 115
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 995 EKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYP-HLIDVLIDSQGSVQTI 1053
+ +V AG V+ L+KL+ S D EV K A L N+A P I ++D+ G V+ +
Sbjct: 80 KAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVL 133
Query: 1054 MWELVRNKEEGYFIAAEILNKICS 1077
+ L E AA L I S
Sbjct: 134 VKLLTSTDSEVQKEAARALANIAS 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,718,107
Number of Sequences: 62578
Number of extensions: 1013534
Number of successful extensions: 2357
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2331
Number of HSP's gapped (non-prelim): 31
length of query: 1139
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1030
effective length of database: 8,152,335
effective search space: 8396905050
effective search space used: 8396905050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)