Query 001148
Match_columns 1139
No_of_seqs 702 out of 2882
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0165 Microtubule-associated 100.0 2.8E-85 6E-90 756.0 9.1 955 70-1138 2-1022(1023)
2 KOG0517 Beta-spectrin [Cytoske 100.0 4.1E-39 9E-44 396.3 55.6 212 399-671 57-275 (2473)
3 COG5069 SAC6 Ca2+-binding acti 99.9 1.5E-25 3.3E-30 252.0 0.4 199 423-668 29-234 (612)
4 KOG0035 Ca2+-binding actin-bun 99.9 4.5E-23 9.7E-28 250.9 6.3 200 421-670 45-251 (890)
5 KOG0165 Microtubule-associated 99.8 3.4E-17 7.4E-22 192.4 22.0 370 717-1109 348-761 (1023)
6 KOG0046 Ca2+-binding actin-bun 99.7 1.7E-17 3.6E-22 189.8 9.9 174 421-626 403-583 (627)
7 KOG0046 Ca2+-binding actin-bun 99.6 1.8E-16 4E-21 181.4 4.7 176 391-588 130-309 (627)
8 smart00033 CH Calponin homolog 99.2 7.3E-12 1.6E-16 118.7 5.7 94 412-512 8-102 (103)
9 cd00014 CH Calponin homology d 99.2 2E-11 4.3E-16 116.8 6.1 98 411-515 8-107 (107)
10 PF00307 CH: Calponin homology 99.0 5.6E-10 1.2E-14 106.9 4.9 97 412-515 7-108 (108)
11 KOG3631 Alpha-parvin and relat 98.7 1.2E-08 2.6E-13 109.5 4.8 98 413-515 266-363 (365)
12 KOG0520 Uncharacterized conser 98.5 1.7E-07 3.7E-12 116.9 9.7 190 677-903 753-947 (975)
13 KOG0160 Myosin class V heavy c 98.5 3.6E-07 7.8E-12 114.1 12.0 90 729-846 670-759 (862)
14 KOG0160 Myosin class V heavy c 98.4 8.1E-06 1.7E-10 102.3 18.9 91 802-932 670-760 (862)
15 KOG0520 Uncharacterized conser 98.4 1.1E-06 2.3E-11 110.1 9.6 121 805-934 810-935 (975)
16 PF00307 CH: Calponin homology 98.1 8.2E-07 1.8E-11 85.0 0.6 48 548-604 1-51 (108)
17 COG5022 Myosin heavy chain [Cy 98.1 0.00017 3.8E-09 93.3 21.1 147 729-937 742-889 (1463)
18 PF11971 CAMSAP_CH: CAMSAP CH 98.0 2.1E-06 4.5E-11 79.9 1.2 43 554-605 1-44 (85)
19 cd00014 CH Calponin homology d 97.9 4.7E-06 1E-10 79.7 1.7 97 547-663 2-103 (107)
20 COG5069 SAC6 Ca2+-binding acti 97.9 2.6E-05 5.7E-10 90.2 7.4 151 423-605 396-557 (612)
21 smart00033 CH Calponin homolog 97.6 3E-05 6.5E-10 73.4 2.8 41 548-588 2-44 (103)
22 COG5022 Myosin heavy chain [Cy 97.4 0.024 5.2E-07 74.3 25.2 134 803-953 743-887 (1463)
23 KOG0518 Actin-binding cytoskel 97.3 1.8E-05 3.8E-10 98.8 -4.2 146 421-590 43-189 (1113)
24 KOG0164 Myosin class I heavy c 97.1 0.0023 5E-08 77.5 11.1 71 719-828 687-757 (1001)
25 KOG3631 Alpha-parvin and relat 97.0 0.0029 6.2E-08 69.1 9.4 177 372-583 83-295 (365)
26 PF00612 IQ: IQ calmodulin-bin 97.0 0.00094 2E-08 45.9 3.4 20 733-752 2-21 (21)
27 KOG0164 Myosin class I heavy c 96.9 0.0056 1.2E-07 74.4 11.4 38 803-841 694-731 (1001)
28 PF00612 IQ: IQ calmodulin-bin 96.5 0.0029 6.4E-08 43.5 3.1 18 807-824 3-20 (21)
29 cd00020 ARM Armadillo/beta-cat 96.1 0.053 1.2E-06 51.8 10.6 103 969-1077 17-120 (120)
30 smart00015 IQ Short calmodulin 95.9 0.0082 1.8E-07 43.4 3.1 20 732-751 3-22 (26)
31 KOG2128 Ras GTPase-activating 95.9 0.36 7.7E-06 63.6 19.6 142 776-933 481-642 (1401)
32 PF11971 CAMSAP_CH: CAMSAP CH 95.9 0.011 2.4E-07 55.2 4.6 79 414-497 3-83 (85)
33 PTZ00014 myosin-A; Provisional 94.9 0.049 1.1E-06 70.1 7.5 43 731-790 776-818 (821)
34 KOG2128 Ras GTPase-activating 94.8 0.42 9.2E-06 63.0 15.3 148 735-912 480-644 (1401)
35 smart00015 IQ Short calmodulin 94.8 0.033 7.1E-07 40.3 3.1 18 807-824 5-22 (26)
36 PTZ00014 myosin-A; Provisional 94.7 0.039 8.5E-07 71.0 5.9 42 805-846 777-818 (821)
37 KOG0516 Dystonin, GAS (Growth- 94.6 0.0098 2.1E-07 79.0 0.0 101 416-520 86-187 (1047)
38 KOG2046 Calponin [Cytoskeleton 94.6 0.066 1.4E-06 56.9 6.1 68 425-499 46-113 (193)
39 KOG1924 RhoA GTPase effector D 93.2 0.16 3.5E-06 62.8 6.7 12 465-476 781-792 (1102)
40 cd00020 ARM Armadillo/beta-cat 90.7 0.82 1.8E-05 43.5 7.3 82 996-1084 2-85 (120)
41 KOG1924 RhoA GTPase effector D 90.5 0.52 1.1E-05 58.6 6.8 6 107-112 623-628 (1102)
42 KOG4427 E3 ubiquitin protein l 88.6 24 0.00051 44.7 18.6 111 982-1105 187-302 (1096)
43 PF00514 Arm: Armadillo/beta-c 87.4 1.4 3.1E-05 34.9 5.3 41 990-1035 1-41 (41)
44 PF06294 DUF1042: Domain of Un 86.0 0.61 1.3E-05 48.7 3.2 88 422-515 12-100 (158)
45 KOG4427 E3 ubiquitin protein l 84.8 14 0.00031 46.5 14.0 22 888-909 28-49 (1096)
46 KOG2996 Rho guanine nucleotide 82.7 1.3 2.8E-05 53.7 4.2 72 423-497 29-101 (865)
47 KOG4199 Uncharacterized conser 80.4 59 0.0013 38.0 15.9 125 945-1076 232-358 (461)
48 KOG0942 E3 ubiquitin protein l 80.3 13 0.00027 48.0 11.6 22 889-910 28-49 (1001)
49 KOG0532 Leucine-rich repeat (L 79.4 1.7 3.6E-05 53.3 3.6 69 425-499 595-668 (722)
50 smart00185 ARM Armadillo/beta- 77.1 5.3 0.00012 30.9 4.8 39 992-1035 3-41 (41)
51 KOG0035 Ca2+-binding actin-bun 76.8 1.9 4.1E-05 55.5 3.2 41 547-587 422-463 (890)
52 PF05536 Neurochondrin: Neuroc 73.8 32 0.0007 43.0 12.8 152 954-1113 94-251 (543)
53 PF05804 KAP: Kinesin-associat 72.9 60 0.0013 41.9 15.0 123 969-1104 300-422 (708)
54 PF10508 Proteasom_PSMB: Prote 72.7 37 0.0008 42.1 13.0 115 962-1083 80-195 (503)
55 PLN03200 cellulose synthase-in 72.3 18 0.00039 51.3 10.9 100 978-1084 423-524 (2102)
56 KOG0162 Myosin class I heavy c 72.1 7.5 0.00016 48.6 6.5 29 730-758 694-722 (1106)
57 COG5199 SCP1 Calponin [Cytoske 69.1 6.2 0.00013 40.5 4.2 53 425-481 34-86 (178)
58 PRK15319 AIDA autotransporter- 68.5 7.3 0.00016 53.6 5.8 6 83-88 1739-1744(2039)
59 PRK09752 adhesin; Provisional 65.0 5.8 0.00013 52.5 3.8 6 83-88 966-971 (1250)
60 PF05804 KAP: Kinesin-associat 62.3 34 0.00073 44.1 9.8 98 976-1078 552-650 (708)
61 PF06371 Drf_GBD: Diaphanous G 60.9 26 0.00057 36.7 7.4 83 994-1076 100-186 (187)
62 PF06294 DUF1042: Domain of Un 60.9 4 8.6E-05 42.8 1.1 35 551-587 1-36 (158)
63 KOG0942 E3 ubiquitin protein l 59.1 9.1 0.0002 49.2 3.9 27 768-794 25-51 (1001)
64 KOG0162 Myosin class I heavy c 58.6 11 0.00023 47.4 4.3 33 802-834 693-725 (1106)
65 PLN03200 cellulose synthase-in 57.5 94 0.002 44.6 13.3 122 961-1088 611-734 (2102)
66 COG5261 IQG1 Protein involved 52.7 1.5E+02 0.0033 38.5 12.8 65 428-499 67-132 (1054)
67 PHA03247 large tegument protei 51.9 24 0.00052 50.3 6.3 28 108-135 2994-3024(3151)
68 KOG0163 Myosin class VI heavy 49.0 2.8E+02 0.0062 35.7 14.0 28 913-940 813-840 (1259)
69 KOG0166 Karyopherin (importin) 48.1 81 0.0017 39.1 9.4 113 979-1097 172-286 (514)
70 PF03032 Brevenin: Brevenin/es 46.4 9.2 0.0002 31.9 0.8 15 333-347 1-15 (46)
71 PF03224 V-ATPase_H_N: V-ATPas 45.4 1.1E+02 0.0024 35.3 9.8 100 1000-1103 145-252 (312)
72 COG5064 SRP1 Karyopherin (impo 44.6 1.1E+02 0.0025 35.8 9.2 116 982-1104 180-296 (526)
73 KOG0517 Beta-spectrin [Cytoske 43.5 71 0.0015 44.5 8.4 104 376-514 164-270 (2473)
74 KOG0377 Protein serine/threoni 41.9 37 0.00079 40.7 5.0 23 676-698 13-35 (631)
75 PF10508 Proteasom_PSMB: Prote 40.8 4.6E+02 0.0099 32.6 14.7 114 974-1090 214-333 (503)
76 KOG2115 Vacuolar sorting prote 38.3 1E+03 0.022 31.7 17.0 116 932-1059 280-400 (951)
77 KOG2046 Calponin [Cytoskeleton 37.9 23 0.0005 38.2 2.4 41 546-587 25-67 (193)
78 KOG0161 Myosin class II heavy 37.8 1.6E+03 0.034 33.0 22.1 39 807-845 775-816 (1930)
79 KOG0377 Protein serine/threoni 36.6 45 0.00097 40.0 4.6 20 731-750 16-35 (631)
80 KOG0566 Inositol-1,4,5-triphos 36.6 59 0.0013 42.5 6.0 19 59-77 1053-1071(1080)
81 COG5261 IQG1 Protein involved 32.6 3.5E+02 0.0075 35.5 11.5 112 769-905 346-464 (1054)
82 PRK13042 superantigen-like pro 32.5 67 0.0014 36.6 5.0 6 44-49 68-73 (291)
83 KOG0161 Myosin class II heavy 31.6 1.9E+03 0.042 32.1 25.6 46 827-908 772-817 (1930)
84 PF03224 V-ATPase_H_N: V-ATPas 31.2 5.5E+02 0.012 29.6 12.6 83 996-1080 186-272 (312)
85 PF09441 Abp2: ARS binding pro 31.0 95 0.0021 32.6 5.4 73 94-173 88-173 (175)
86 KOG0946 ER-Golgi vesicle-tethe 30.0 5.6E+02 0.012 33.6 12.7 92 1007-1099 64-175 (970)
87 KOG1419 Voltage-gated K+ chann 27.4 57 0.0012 40.3 3.6 35 873-907 323-357 (654)
88 PF15449 Retinal: Retinal prot 27.3 1.3E+02 0.0028 40.1 6.7 13 66-78 1099-1111(1287)
89 KOG1785 Tyrosine kinase negati 24.9 1.2E+02 0.0025 36.2 5.3 12 59-70 522-533 (563)
90 PF01690 PLRV_ORF5: Potato lea 24.9 56 0.0012 39.7 3.0 8 6-13 5-12 (465)
91 KOG4500 Rho/Rac GTPase guanine 24.6 4.3E+02 0.0093 32.3 9.9 63 992-1055 347-409 (604)
92 KOG2627 Nuclear protein ES2 [G 24.6 27 0.00059 41.6 0.3 52 30-83 383-443 (488)
93 KOG0905 Phosphoinositide 3-kin 22.3 1.5E+02 0.0033 39.9 6.1 23 1116-1138 1445-1467(1639)
94 PF04621 ETS_PEA3_N: PEA3 subf 21.9 1.4E+02 0.0031 35.1 5.4 14 156-169 279-292 (341)
95 KOG4645 MAPKKK (MAP kinase kin 21.5 1.3E+02 0.0028 41.2 5.4 31 58-88 82-112 (1509)
96 PLN00034 mitogen-activated pro 21.0 1.7E+02 0.0037 33.7 6.0 12 1-12 1-12 (353)
97 cd08757 SAM_PNT_ESE Sterile al 20.5 91 0.002 28.1 2.7 35 549-583 8-45 (68)
98 KOG1785 Tyrosine kinase negati 20.4 1.7E+02 0.0037 34.8 5.5 22 23-44 508-530 (563)
No 1
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=100.00 E-value=2.8e-85 Score=755.97 Aligned_cols=955 Identities=11% Similarity=-0.023 Sum_probs=750.2
Q ss_pred CCCCCCCCccch-hHHHHhhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCccCCCCCccccCC
Q 001148 70 LSSARSKSTKTK-TAAARRLKSLEVEQSKSAYKSQLKKEQSLKSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGK 148 (1139)
Q Consensus 70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1139)
|+++-++-..|+ ..+.|++|+|+++|++++||+++..|.- +++|+|.|+|+|+++.||+.|||+++..+ .|-...|+
T Consensus 2 dnnVedkkeamlkrlanRheKrlldQvksntkKidLrater-afLesSpTsmnmrtplNPsisssvsdspi-lsydekan 79 (1023)
T KOG0165|consen 2 DNNVEDKKEAMLKRLANRHEKRLLDQVKSNTKKIDLRATER-AFLESSPTSMNMRTPLNPSISSSVSDSPI-LSYDEKAN 79 (1023)
T ss_pred CchhhhHHHHHHHHHhhHHHHHHHHHHhcccchhhhhHHHH-HHHhcCchHHhccCCCCccccCCCCCCcc-cccccccc
Confidence 455555555554 7889999999999999999999987776 99999999999999999999999987643 34567778
Q ss_pred ccccC----------CcccccCChhhhhhhcccCCCcccccccccchhhHHHHHHHHHhhcchHhHHHHHHHhhcccccH
Q 001148 149 GKREG----------GEVMTWRDPKRQRDACWRGDSDEIESEGAVSESKYSTLRKSLNSICSLEDLNQRMRIYMSLGCCK 218 (1139)
Q Consensus 149 ~~~~~----------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~r~~~y~~~~~~~ 218 (1139)
|++|+ |++++|++|++.|..+|+++.|-.+-.+..+..++.|++.+|+.+|+++|++|+|....++..|.
T Consensus 80 kqiia~~~~~N~k~v~~~~m~~~~~~s~~~~~r~~~K~~~~~S~~~~~~~~T~~~~lR~~q~~~~~~q~~~~~~~~k~~~ 159 (1023)
T KOG0165|consen 80 KQIIAMKVRQNLKNVSEEKMAAIVNQSALCCYRSKTKYEAVQSEGVMIQEWTKASGLRCSQEAEYHSQSRAAVTIQKAFC 159 (1023)
T ss_pred cceeHHHHHhhhhhhhHHHHHhcccHHHHHHhhhhHHHHhhhccchhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 99888 88999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCceeeecCCCcccchhhhHHHHHHHhcCCHHHHHHHHHHhhcCCcCCCCCCcchhhHHHHHHHHH
Q 001148 219 EIFDIMSRVTKNIDDGRLQMKSHCPIVTDFGMKEKATNILLCYNSVWLRIGLYILFGGDSLLSNEDVNTCQEMEFLKMMI 298 (1139)
Q Consensus 219 ~v~~~~~~~~~~i~~~~l~~r~~~~~~~Dvgl~~~~l~~l~~y~p~wLr~gle~v~G~~~~~~~~~~~~~~~~~~l~~~i 298 (1139)
|+++++.++.+.|++|++.|++.|++++|+|+|++++..|+||||.|||.|||.|||+++.+++ +..+.+|++||
T Consensus 160 ~~~~~~~~v~k~~~~~~~~~~~~~~~~~DfG~q~~a~~tl~Sy~~~WL~~~L~~IF~~~~~~~~-----khlM~kL~~f~ 234 (1023)
T KOG0165|consen 160 RMVTRKLETQKCAALRIQFFLQMAVYRRDFGQQKRAAITLQSYFRTWLTRKLFLIFRKAAVVLQ-----KHLMHKLRAFL 234 (1023)
T ss_pred HHhhhhhHHHHHHHhhhHHHhhhchhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccchhcCc-----HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887765 47899999999
Q ss_pred HHhhcCChhHHhhhhccCCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCCCCCcccccCCccc
Q 001148 299 EKQFFTHAGLAKAFAYNKNVEGLYRPGYYEALGSVILKRVLLLVLILDRAKSQSLLPLKYGIDGVDGGSPLLFSVQSNVK 378 (1139)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~r~l~lv~~LD~Ak~~~~~~~~~~id~~~~~~p~LF~~~s~~K 378 (1139)
...+|+||++++.|-+++++.|+|+++|.|||++++|++++.||+++|+|+.++.+|..|||||.+ +|..|.-++..|
T Consensus 235 s~~~FS~ptmlk~y~~~~s~~~ii~~~~kEAL~k~~L~~i~~L~~~I~~A~~~~~~~~~~~I~~~~--S~~~~~~d~~~~ 312 (1023)
T KOG0165|consen 235 SAKHFSQPTMLKVYLQIRSSVIIIQARSKEALQKRKLQEIKNLTIKIQAAWRRYRAKKYLCIVKAA--SCKIQAWDYRCW 312 (1023)
T ss_pred HHHHhcCchHHHHHHHhccCceeeccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc--hHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999976 788888888888
Q ss_pred cHHHHHHHHhccccccCCCChhHHhhhccceeecccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCC
Q 001148 379 SSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPS 458 (1139)
Q Consensus 379 sS~~~l~~~~~~~~l~g~gd~~r~L~~lg~~~~~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~ 458 (1139)
++.+++.. .--..+.....||.+.|.|+.+..|++.-.-+--|.+||+.|-.+.|..........+.+.|+
T Consensus 313 ~sh~L~~G---------S~~~~k~~~~~~~~~~~rq~r~~N~~~~ai~~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a 383 (1023)
T KOG0165|consen 313 RAHKLYLG---------SLKAVKIIQGCFYTKLERQTRFLNVRASAIIIQRKWRAGLPLKIAHEHFLMIKRHRAACRIQA 383 (1023)
T ss_pred HHHHHHhh---------hHHHHHHHHhccceecchHhHHhhHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHHHHhhhHh
Confidence 87777643 333566777899999999999999999877777799999999999987654444555678999
Q ss_pred CCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHHHHHHHHHhhhhhh-hcccc-hhhHHHhhccCC
Q 001148 459 DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLM-INKKH-LTEEICKIRGTN 536 (1139)
Q Consensus 459 ~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLLW~li~~fqi~~l-~d~~~-l~~Ei~~l~~~~ 536 (1139)
.+|+-+|.||.+.|..+.. |+...+ |..+-+|.||...|++..|.++.-++-..- ...+. +.++
T Consensus 384 ~~r~~kI~~V~l~L~~~~s-gl~T~~-----~~~~~~Vg~~~~i~~S~~~~~~~~~~a~~~g~~v~~~V~~~-------- 449 (1023)
T KOG0165|consen 384 HYRGYKIRQVSLRLKSAAS-GLITQK-----YIRAREVGKHERIKYSEFKKSTVILQALVRGWLVRKRVEQR-------- 449 (1023)
T ss_pred HHHHhccceeEEEehhhhc-cccHHH-----HHHHHhhcccccchhHHHHHHHHHHHhcccceeechhhhhc--------
Confidence 9999999999999999984 777666 889999999999999999999877643310 00000 0000
Q ss_pred CCccccccccHHHHHHHHHHHHHccCCceecCCCCCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchh
Q 001148 537 MDNLNIFDSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSV 616 (1139)
Q Consensus 537 ~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFtS~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~ 616 (1139)
.....+ .+ +.+..+..+.+.|+ +|... +|.-.+...+..|+
T Consensus 450 --------~~~~~~----~~-----------------------~~~~~~~l~aL~~~-~~y~~---~l~~~na~~~~~Sv 490 (1023)
T KOG0165|consen 450 --------AKIRLL----HF-----------------------TAAAYYHLNALRIQ-RAYKL---YLAVKNANKQVNSV 490 (1023)
T ss_pred --------CCHHHH----HH-----------------------HHHHHHHHHHHhhh-hhhhH---HHHHHHhccccchh
Confidence 000000 00 01111111111222 33332 22222222344455
Q ss_pred HHHHHhhhhHHHHhhhh----------------------hhcCccccccccCCCCCCccCCCceeccc-ccCCCCcccCC
Q 001148 617 VILLVFLSSQLIVKKNM----------------------DQLNLHKLLGCNCQSPERRHSNPNCRIVD-SEALPDQEENG 673 (1139)
Q Consensus 617 ~~~laF~~s~l~~k~~l----------------------~~lgi~~lL~v~~~~pd~r~~~mtyv~~~-~~~~~~~~~~~ 673 (1139)
+.++||+.+.|..++++ -++||++++..-|+...+|.. |...+-. .........+.
T Consensus 491 icLLA~L~s~l~~k~~~~~~~~~~~L~~~V~S~~~~~~~~Q~~~~k~~~~f~~~~~~R~~-~I~i~~~~a~~~~~~w~~~ 569 (1023)
T KOG0165|consen 491 ICLLAWLRARLQEKRFIQKYHSIKKLEHEVQSCLSQRNRAQSVIQKAVRHFLLRKKQRKF-TIGIIKIQALWRGYSWRKK 569 (1023)
T ss_pred HHHHHHHHHHHhcccchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhhhhhhh
Confidence 55556665555554444 256777766533332323332 1110000 00000001111
Q ss_pred cchhHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 001148 674 HSTEDAVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLK 753 (1139)
Q Consensus 674 ~~~e~~aRaA~~IQawwR~~~aRk~~~~~~~Aa~~IQ~~~r~k~~~~iqR~~r~l~~~~~AAi~IQs~~Rg~laRr~y~~ 753 (1139)
...++..+-...||+||+.+...++......-+.+.|......|.+.-++.+ +..-..++..||...+|-.+++.+..
T Consensus 570 ~~~~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~R~~~~~e~~~~--l~~~~~~~~~~~~n~~~~~a~sie~~ 647 (1023)
T KOG0165|consen 570 NDCTKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYKRLSAILEALKH--LEVVTRLSPLCCENMAQSGAISIEKI 647 (1023)
T ss_pred hcccccHHHHHHHHHHHHHhhcccccCcccccceeeeccccchhhhhhhHHH--hhHHHHhhHHHhhhhhhhchhhHHHH
Confidence 1233455667789999999877665333333455566666667888888887 46678899999999999999997665
Q ss_pred HHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchh------hHHHHHHHHHHHHHHHHHhhhhhh
Q 001148 754 MRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDV------GIKAALKIQSSWRNFIASRSLQKN 827 (1139)
Q Consensus 754 ~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~------~~~AAi~IQ~~~Rg~laRr~y~r~ 827 (1139)
-..+ -..+|+.++.|..+...+..-.-. .++. ...-.+.|-....-...+..+.+.
T Consensus 648 ~~~~-----------------~~~Lr~~~~~~~i~~~Iqv~~~~~-~~E~t~~~~~~~~n~~~v~~~~~~i~~~~~~~k~ 709 (1023)
T KOG0165|consen 648 FVLI-----------------RSCLRSIPCMEVIRYAIQVLLNVS-KYEKTTSAVYDVENCIDILLELLQIYREKPGNKV 709 (1023)
T ss_pred HHHH-----------------HhhhccchHHHHHHHHHHHHHhcc-cceeechhhhhhhhHHHHHHHHHHHHhcCccchh
Confidence 5543 477899999998887655432100 0111 111223333333334445556666
Q ss_pred HHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHH
Q 001148 828 YFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARR 907 (1139)
Q Consensus 828 r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk~~~~AAi~IQs~~Rg~laRr 907 (1139)
+....+||++.+....- +-....+|..||++||....-+.....-+.+|.+.++|..+.
T Consensus 710 ~dk~~Vi~~A~~~~~~~---------------------l~~~L~~as~I~sAs~S~~~~~~~~~~~~~~~~~~~d~~~~~ 768 (1023)
T KOG0165|consen 710 ADKGGVIFTATCCLLAI---------------------LLKTLNRASDIRSASKSVDRIYSLYKLTAHKHKMNTDERILY 768 (1023)
T ss_pred hccCccccchhhhcCcc---------------------chhhHHHhhcchhhhhHHHHHHHHHhhhhhcccccccceEEE
Confidence 66777777766544331 223456788899999986655556677889999999998776
Q ss_pred HHhhccc-----------hhHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001148 908 RAYKEKH-----------HIVLIQSYWRGCLARKASSCQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGI 976 (1139)
Q Consensus 908 ~~~~~~~-----------Aai~IQa~wRg~~aRK~~~~kl~~lR~Rlq~~~~~v~ee~kl~~Rl~~AL~~Ll~~k~ls~I 976 (1139)
..+.... .--++|++|+||..|+...+++-..+.+++-....+..-+ +.+....++-.+|.++...++
T Consensus 769 ~~~~~s~~si~~~~e~S~~~~i~~~l~~~~~~r~~~~e~v~~~~~~~qT~~~~~~~~~-frmteeqerlEmLfqslsedq 847 (1023)
T KOG0165|consen 769 KQKKNSSISIPFIPETSVRTRIVSRLKPDWVLRRDNMEEITNPLQAIQTVMDTLGIPY-FRMTEEQERLEMLFQSLSEDQ 847 (1023)
T ss_pred eeccCCcceeeccccCccchhhhhhcCcchhhccCcHhhcCCchhhcccccccCCcHH-HHHHHHHHHHHHHHHhhhHHH
Confidence 5433222 2346899999999999999999999999999988887655 888888899999999999999
Q ss_pred HHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148 977 LHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 977 L~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
++-|++++..|.++..||+-.+..|++...++.|++--+++|+..|-.++...+-.+++|+...++.+..-.+++++|+|
T Consensus 848 knfvkTnnlsvsieDdantpelrrielkrkqqeIarklgnIernalavrdggedssdsRsdaghDvaIlhgddsQlqldq 927 (1023)
T KOG0165|consen 848 KNFVKTNNLSVSIEDDANTPELRRIELKRKQQEIARKLGNIERNALAVRDGGEDSSDSRSDAGHDVAILHGDDSQLQLDQ 927 (1023)
T ss_pred HHHHhhcccceeeccccCCHHHHHHHHHHHHHHHHHHhCCCchhhhhhhcCCcccccccCcccccchhhcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-------------hccCccchHHHHHHHhhCCCchhhHHhhChHHHHHHHHHHHHHhhhhHHHHhhccchhhhhhHH
Q 001148 1057 LVR-------------NKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLEKRNARNSAVRENLE 1123 (1139)
Q Consensus 1057 ll~-------------~k~~~~f~a~~ll~~l~~~~~~~~~v~~~p~~~~rl~sl~~l~~rk~~~~kr~~~~~~~~~~~~ 1123 (1139)
++| +++..||++...|+..|+.+.+++.|++.|-..++|+-..+++.++.+||+||..+.-.++..+
T Consensus 928 ksqlqndetqilenkKkaavviqkmirgfiarrkfqmeisniRnrmiqynhilaqedEqigieemEdksVeaklkKcalh 1007 (1023)
T KOG0165|consen 928 KSQLQNDETQILENKKKAAVVIQKMIRGFIARRKFQMEISNIRNRMIQYNHILAQEDEQIGIEEMEDKSVEAKLKKCALH 1007 (1023)
T ss_pred HHhcccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHhhhcchHHHhhHHHhh
Confidence 987 1345689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 001148 1124 RRLREAAEILKLIKH 1138 (1139)
Q Consensus 1124 ~rl~~~~~~~~~~~~ 1138 (1139)
++++|+.++.|++|+
T Consensus 1008 gltndnlhvVhvaat 1022 (1023)
T KOG0165|consen 1008 GLTNDNLHVVHVAAT 1022 (1023)
T ss_pred hhhhcceeEEEeeec
Confidence 999999999998774
No 2
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=100.00 E-value=4.1e-39 Score=396.29 Aligned_cols=212 Identities=24% Similarity=0.414 Sum_probs=186.3
Q ss_pred hhHHhhhccceeecccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCC--CCchhHHhhHHHHHHHHH
Q 001148 399 LFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPS--DTHRKNSVNCSIALQYLR 476 (1139)
Q Consensus 399 ~~r~L~~lg~~~~~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~--~~R~~ki~Nv~~AL~~lk 476 (1139)
++.||...|| +|.|||+||+||+.|++|+|+|||+ ++..|. .+|+|+++||+.||+||+
T Consensus 57 vNShL~rv~c--------------~I~DLy~DlrDG~~LlkLLEvlSGE-----~LpkPtrGRMRIH~LENvdKaLqFLk 117 (2473)
T KOG0517|consen 57 VNSHLARVSC--------------RIGDLYTDLRDGIMLLKLLEVLSGE-----RLPKPTRGRMRIHCLENVDKALQFLK 117 (2473)
T ss_pred HHHHHHHhcc--------------hhHHHHHHHhhhHHHHHHHHHHccc-----cCCCCCCCceeehhHhhhHHHHHHHH
Confidence 4567777777 8999999999999999999999999 444454 358999999999999999
Q ss_pred HcCCcccCCCCCccccccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHH
Q 001148 477 QAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQ 556 (1139)
Q Consensus 477 ~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q 556 (1139)
...|.|.| ||++||||||..+||||||+||++|||..|.=.+.- ..+..+++++||.|||
T Consensus 118 eqkVhLEn-----iGshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~ed---------------n~E~rSAKDALLLWCQ 177 (2473)
T KOG0517|consen 118 EQKVHLEN-----IGSHDIVDGNHRLILGLIWTIILRFQIQDISIETED---------------NRETRSAKDALLLWCQ 177 (2473)
T ss_pred hccccccc-----CCcccccCCcchhhHHHHHHHHHheeeeeeEeeccc---------------chhhhhHHHHHHHHHH
Confidence 99999999 999999999999999999999999999998411110 1245689999999999
Q ss_pred HHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhh
Q 001148 557 VICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMD 634 (1139)
Q Consensus 557 ~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~ 634 (1139)
..|++| ||+|+||| ||+||.+|+||||.+ +||++|++.+.. ++...|+..||++|. .
T Consensus 178 mKTAGYpnVNI~nFTtSWRdGLaFNALIHkH---------RPDLvDf~~L~k-----~na~~NL~~AFdvAE-------~ 236 (2473)
T KOG0517|consen 178 MKTAGYPNVNITNFTTSWRDGLAFNALIHKH---------RPDLVDFDKLKK-----SNALYNLQHAFDVAE-------Q 236 (2473)
T ss_pred hhccCCCCcccccCccchhcchhHHHHHHhc---------CcchhhhcccCC-----CchhhHHHHHHHHHH-------H
Confidence 999999 89999998 999999999999999 999999988853 334458889999997 8
Q ss_pred hcCcccccc---ccCCCCCCccCCCceecccccCCCCccc
Q 001148 635 QLNLHKLLG---CNCQSPERRHSNPNCRIVDSEALPDQEE 671 (1139)
Q Consensus 635 ~lgi~~lL~---v~~~~pd~r~~~mtyv~~~~~~~~~~~~ 671 (1139)
+|||.+||| |++..||+||+ ||||..|||+|.+...
T Consensus 237 ~LGia~LLDpEDV~v~~PDEKSI-ITYV~~YYHyFsKmK~ 275 (2473)
T KOG0517|consen 237 ELGIAKLLDPEDVNVEQPDEKSI-ITYVVTYYHYFSKMKQ 275 (2473)
T ss_pred HcCchhcCCHhhcCccCCCcchH-HHHHHHHHHHHHHHHH
Confidence 999999999 99999999998 6999999999997443
No 3
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.90 E-value=1.5e-25 Score=251.96 Aligned_cols=199 Identities=23% Similarity=0.330 Sum_probs=170.0
Q ss_pred ccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccc
Q 001148 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKEL 502 (1139)
Q Consensus 423 ~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~ 502 (1139)
.+.||.+|+.||+.|..++|.+..+. ...++..|.+|+|+++||+-+|+|++..|+++.| |+|.||||||+++
T Consensus 29 ~~~dL~~Dl~dgv~l~qlLe~~~kd~--~g~yn~~p~tr~h~~envs~~le~ik~kg~~l~N-----igp~divdGn~kl 101 (612)
T COG5069 29 EFGDLDTDLKDGVKLAQLLEALQKDN--AGEYNETPETRIHVMENVSGRLEFIKGKGVKLFN-----IGPQDIVDGNPKL 101 (612)
T ss_pred HHhhhccccccHHHHHHHHHHhhhcc--ccccCCCHHHHHHHhhccccceeeeccCCceeee-----eCccccccCchhh
Confidence 68899999999999999999999763 3456677889999999999999999999999999 9999999999999
Q ss_pred hhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC--CceecCCC-CCCchhhHH
Q 001148 503 ILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY--DFRINNFS-SLTDGKAIW 579 (1139)
Q Consensus 503 tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y--gv~V~NFt-S~~DGraf~ 579 (1139)
++||+|++|.++.+..+-... | .+...-|+.||+..+++| .+++-+|+ ||+||.|||
T Consensus 102 ilGliw~lisr~tia~inEeg----e----------------lt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~ 161 (612)
T COG5069 102 ILGLIWSLISRLTIATINEEG----E----------------LTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFS 161 (612)
T ss_pred hheeeeeeeehhhhhcccchh----h----------------HHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHH
Confidence 999999999999998762111 2 233466899999999999 47888998 999999999
Q ss_pred HHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc----ccCCCCCCccCC
Q 001148 580 CLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG----CNCQSPERRHSN 655 (1139)
Q Consensus 580 aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~----v~~~~pd~r~~~ 655 (1139)
+|||.+ +||.+++.-+..+ -.++..+...||..|. .-+|++++++ |++..||+|++
T Consensus 162 aLIh~~---------rPDtld~n~ld~q---kknk~~n~~qafe~a~-------k~Igi~rli~vedivnV~~pDERsi- 221 (612)
T COG5069 162 ALIHDS---------RPDTLDPNVLDLQ---KKNKALNNFQAFENAN-------KVIGIARLIGVEDIVNVSIPDERSI- 221 (612)
T ss_pred HHHhhc---------CCcccCccccchh---hcccchhHHHHHHHHH-------HhhchHhhcCcceeeecCCcchHHH-
Confidence 999999 9999887644321 2456677888999887 5689999998 78999999886
Q ss_pred CceecccccCCCC
Q 001148 656 PNCRIVDSEALPD 668 (1139)
Q Consensus 656 mtyv~~~~~~~~~ 668 (1139)
||||+.|+..|..
T Consensus 222 mtyv~~y~~rf~~ 234 (612)
T COG5069 222 MTYVSWYIIRFGL 234 (612)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988874
No 4
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.87 E-value=4.5e-23 Score=250.89 Aligned_cols=200 Identities=19% Similarity=0.324 Sum_probs=171.5
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCc
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
.-.|.++.+|++||+.|.-++|++.++.. .+... ...|+||++|++-+|.|.+..|+++++ |+|++|||||.
T Consensus 45 ~s~ie~~e~D~~n~lk~~~l~ev~~~e~l--~~~~~-~~~r~hk~En~~~~l~~~~sk~v~~~~-----iga~eivd~n~ 116 (890)
T KOG0035|consen 45 GSSIEEIEEDFSNGLKLLILLEVISGENL--PPPTR-GKMRVHKLENVNKALVFIESKGVKLVS-----IGAEEIVDGNL 116 (890)
T ss_pred cCccchhhhhhhhhhhhhhhcccccCCcc--CCCCC-CccchhhhccccceEEEeccccccccc-----cchhhhcCcch
Confidence 34799999999999999999999999831 11111 256899999999999999999999999 99999999999
Q ss_pred cchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhH
Q 001148 501 ELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAI 578 (1139)
Q Consensus 501 k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf 578 (1139)
+++||++|+||++|-|..+.-. -..++++.|+.||+.+++.| ++.|.||+ ||.||.+|
T Consensus 117 ~~~l~~i~tlilr~~i~~is~~--------------------~e~~a~egllLwcq~~Ta~y~~v~v~nF~~sw~~gl~f 176 (890)
T KOG0035|consen 117 KLTLGLIWTLILRFAIQDISVE--------------------CELSAKEGLLLWCQRKTAPYSNVNVQNFHTSWKDGLAF 176 (890)
T ss_pred hhhhHHHHHhhccccccchhhh--------------------cchhhhhhhhhheecccCCccccccccceecccchHHH
Confidence 9999999999999999875211 02346788999999999999 89999998 99999999
Q ss_pred HHHHHhhccCCCCCCCcccccc-chhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc----ccCCCCCCcc
Q 001148 579 WCLLDFYFRKEPCGSCTSKVLQ-MSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG----CNCQSPERRH 653 (1139)
Q Consensus 579 ~aLI~~~~p~~~lg~~~P~ll~-~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~----v~~~~pd~r~ 653 (1139)
|++||++ +|++++ +.++.. ++...++..||..|. ..++|+++|| ++...||++.
T Consensus 177 ~A~ih~~---------Rpdli~~y~~lt~-----~~~~~n~~~A~~iAe-------k~l~i~r~ld~ed~~~~~~pde~a 235 (890)
T KOG0035|consen 177 CALIHRH---------RPDLIDQYDKLTK-----QDPVENLNLAFDIAE-------KFLGIPRLLDAEDIVEAAIPDEKA 235 (890)
T ss_pred HHHHHhc---------ChhhhhhhhhcCc-----cchhHHhhhhhhhhh-------hcCCcccccCccccccCCCCchhh
Confidence 9999999 999998 776643 344457788999986 5699999999 6788999999
Q ss_pred CCCceecccccCCCCcc
Q 001148 654 SNPNCRIVDSEALPDQE 670 (1139)
Q Consensus 654 ~~mtyv~~~~~~~~~~~ 670 (1139)
+ |||++.+|++|..++
T Consensus 236 i-mtyv~~~~~~fSg~~ 251 (890)
T KOG0035|consen 236 I-MTYVSSYYHAFSGAE 251 (890)
T ss_pred h-hhhhhhccccccCcc
Confidence 7 999999999999765
No 5
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=99.76 E-value=3.4e-17 Score=192.39 Aligned_cols=370 Identities=23% Similarity=0.354 Sum_probs=279.3
Q ss_pred hhhHHHHHHH------------HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh----hhcccccchh
Q 001148 717 SNINMERAID------------VLMLPGNAAKVIKFHFRGWIERRNFLKMRNAAR--------SIL----LHCISTPDLL 772 (1139)
Q Consensus 717 ~~~~iqR~~r------------~l~~~~~AAi~IQs~~Rg~laRr~y~~~R~a~~--------~wr----~~r~~~~~~~ 772 (1139)
|++.+||.|+ .....+.++.++|+.+|+|..+.--..+..++- .-+ ..++.+-...
T Consensus 348 ~ai~~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a~~r~~kI~~V~l~L~~~~sgl~T~~~~~~~~Vg~~~~i~~S~~~ 427 (1023)
T KOG0165|consen 348 SAIIIQRKWRAGLPLKIAHEHFLMIKRHRAACRIQAHYRGYKIRQVSLRLKSAASGLITQKYIRAREVGKHERIKYSEFK 427 (1023)
T ss_pred HHHHHhHhhhcCcchHHHHHHHHHHHHHHHHhhhHhHHHHhccceeEEEehhhhccccHHHHHHHHhhcccccchhHHHH
Confidence 5566666554 123578889999999999988743222222211 001 1223344455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHhhc
Q 001148 773 SGATDEQKYLHSYAEIDKASIMCQEKS----DSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAI 848 (1139)
Q Consensus 773 ~AAi~IQa~~Rg~laRr~~~~lr~er~----r~~~~~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~~~ 848 (1139)
+.....|+-.+||.+++.+...+.-+. --.-++.-|.++|..|-++++-...-....+++++=++.+..+.-+...
T Consensus 428 ~~~~~~~a~~~g~~v~~~V~~~~~~~~~~~~~~~~~~l~aL~~~~~y~~~l~~~na~~~~~SvicLLA~L~s~l~~k~~~ 507 (1023)
T KOG0165|consen 428 KSTVILQALVRGWLVRKRVEQRAKIRLLHFTAAAYYHLNALRIQRAYKLYLAVKNANKQVNSVICLLAWLRARLQEKRFI 507 (1023)
T ss_pred HHHHHHHhcccceeechhhhhcCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccchhHHHHHHHHHHHhcccch
Confidence 667778888999998876543221000 0012334678889988888887777777778888888887777655542
Q ss_pred ccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHH-HHhhhhhHHHHHHHHHhhHHHHHHHhhccchhHhhHHHHhhhH
Q 001148 849 PSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVL-LLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCL 927 (1139)
Q Consensus 849 ~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l-~rk~~~~AAi~IQs~~Rg~laRr~~~~~~~Aai~IQa~wRg~~ 927 (1139)
..- ..+.. .|-... ....+..+-..||...+.+..+...+...-.++.+|+.|+++.
T Consensus 508 ~~~-------------------~~~~~---L~~~V~S~~~~~~~~Q~~~~k~~~~f~~~~~~R~~~I~i~~~~a~~~~~~ 565 (1023)
T KOG0165|consen 508 QKY-------------------HSIKK---LEHEVQSCLSQRNRAQSVIQKAVRHFLLRKKQRKFTIGIIKIQALWRGYS 565 (1023)
T ss_pred HHh-------------------hhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 100 00000 011111 1123456677889999999888888878888999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHH--
Q 001148 928 ARKASS-CQLLDLRLRIQISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVD-- 1004 (1139)
Q Consensus 928 aRK~~~-~kl~~lR~Rlq~~~~~v~ee~kl~~Rl~~AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~-- 1004 (1139)
+++... +....++..+|...+...+++++.-+...+.+++.+++..+.++++.++|+.++..++.||++|.+++|++
T Consensus 566 w~~~~~~~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~R~~~~~e~~~~l~~~~~~~~~~~~n~~~~~a~sie 645 (1023)
T KOG0165|consen 566 WRKKNDCTKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYKRLSAILEALKHLEVVTRLSPLCCENMAQSGAISIE 645 (1023)
T ss_pred hhhhhcccccHHHHHHHHHHHHHhhcccccCcccccceeeeccccchhhhhhhHHHhhHHHHhhHHHhhhhhhhchhhHH
Confidence 998775 45677888999999999999998889999999999999999999999999999999999999999999965
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHH---h--------hccCccch-HHHHH
Q 001148 1005 TLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELV---R--------NKEEGYFI-AAEIL 1072 (1139)
Q Consensus 1005 ~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll---~--------~k~~~~f~-a~~ll 1072 (1139)
.++.++++|=|+.|||+++.++++++.|..+|+.|++.+|+++|+++... ++. + .|++.+|. .|+++
T Consensus 646 ~~~~~~~~~Lr~~~~~~~i~~~Iqv~~~~~~~E~t~~~~~~~~n~~~v~~-~~~~i~~~~~~~k~~dk~~Vi~~A~~~~~ 724 (1023)
T KOG0165|consen 646 KIFVLIRSCLRSIPCMEVIRYAIQVLLNVSKYEKTTSAVYDVENCIDILL-ELLQIYREKPGNKVADKGGVIFTATCCLL 724 (1023)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHhcccceeechhhhhhhhHHHHHH-HHHHHHhcCccchhhccCccccchhhhcC
Confidence 78999999999999999999999999999999999999999999998873 332 2 35667898 67888
Q ss_pred HHhhCCCchhhHHhhChHHHHHHHHHHHHHhhhhHHH
Q 001148 1073 NKICSTHKGVEAISKLPAHLKRLNSLVDELTRKQSLE 1109 (1139)
Q Consensus 1073 ~~l~~~~~~~~~v~~~p~~~~rl~sl~~l~~rk~~~~ 1109 (1139)
..|...=+.+..|++-.+.++|+++.|...+.++.+-
T Consensus 725 ~~l~~~L~~as~I~sAs~S~~~~~~~~~~~~~~~~~~ 761 (1023)
T KOG0165|consen 725 AILLKTLNRASDIRSASKSVDRIYSLYKLTAHKHKMN 761 (1023)
T ss_pred ccchhhHHHhhcchhhhhHHHHHHHHHhhhhhccccc
Confidence 8888888888999999999999999999999988764
No 6
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=99.71 E-value=1.7e-17 Score=189.77 Aligned_cols=174 Identities=23% Similarity=0.324 Sum_probs=140.6
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCC---CCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccC
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPS---DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVAN 497 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~---~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVd 497 (1139)
+..|+++|.||+||.+|..++|.++.+...+++.+.|+ ..-+.|++||+.|.+..++.++.+++ |.+.||+|
T Consensus 403 ~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~FSLVg-----i~G~DI~d 477 (627)
T KOG0046|consen 403 NPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKFSLVG-----IAGQDIVD 477 (627)
T ss_pred cHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcceeeec-----cccccccc
Confidence 45699999999999999999999998766666666663 23579999999999999999999999 99999999
Q ss_pred CCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCc--eecCCC--CCC
Q 001148 498 GDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDF--RINNFS--SLT 573 (1139)
Q Consensus 498 G~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv--~V~NFt--S~~ 573 (1139)
||.++||||+||||++|.++.+-+.. .. ........++.|+|...+..|. .|.+|. +.+
T Consensus 478 GNk~LtLAlvWQLMR~ytL~vL~~l~----------~~-------~~~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~siS 540 (627)
T KOG0046|consen 478 GNKTLTLALVWQLMRRYTLQVLKSLR----------SG-------GKDITDSDIVNWANRKLKKAGKKSQIRSFKDKSIS 540 (627)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHh----------hc-------CCCCcHHHHHHHHHHHHHhcCCccccccccCcccc
Confidence 99999999999999999988763221 11 1122356789999999887764 899995 999
Q ss_pred chhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhH
Q 001148 574 DGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQ 626 (1139)
Q Consensus 574 DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~ 626 (1139)
||+++..||+.+ -|..++++-+. +....+|+..|.-+|-.+|+
T Consensus 541 ~g~~vLDLidaI---------~P~~Vn~~LV~-~G~t~EdK~~NAkYaIS~AR 583 (627)
T KOG0046|consen 541 DGLFVLDLLDAI---------KPGVVNYSLVT-SGNTDEEKLLNAKYAISVAR 583 (627)
T ss_pred cCcchHHHHhhc---------CcCccchhhcc-CCCChhhhhhcchhhHhHHH
Confidence 999999999999 67778876554 34455666667666777775
No 7
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=99.62 E-value=1.8e-16 Score=181.40 Aligned_cols=176 Identities=22% Similarity=0.303 Sum_probs=139.8
Q ss_pred ccccCCCChhHHhhhccceeecccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccc-cCCCCchhHHhhHH
Q 001148 391 EVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIV-VPSDTHRKNSVNCS 469 (1139)
Q Consensus 391 ~~l~g~gd~~r~L~~lg~~~~~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~-~p~~~R~~ki~Nv~ 469 (1139)
..|.|.-|+..-| ..|..-++||.-.+||+.||+|+++--+++...+.++ ....+.+...+|.+
T Consensus 130 ~~L~~Dpdl~~~l---------------Pinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~ 194 (627)
T KOG0046|consen 130 SYLEGDPDLKHLL---------------PINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLN 194 (627)
T ss_pred HHhcCCcchhhcC---------------CCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchh
Confidence 5566776666555 4456677999999999999999999998876666666 45567789999999
Q ss_pred HHHHHHHHcCCcccCCCCCccccccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHH
Q 001148 470 IALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLD 549 (1139)
Q Consensus 470 ~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~ 549 (1139)
+||+..+..||.++| |+++||.+|.+.++||||||||...-+.++ +.+ ..+++.+|-..+.+.......++++
T Consensus 195 l~lnSAkAiGc~VvN-----Iga~Dl~eGrphLVLGLiwQiIkiglladi-~l~-~~p~L~~Ll~d~e~lEelm~L~PEk 267 (627)
T KOG0046|consen 195 LALNSAKAIGCTVVN-----IGAQDLAEGRPHLVLGLIWQIIKIGLLADI-NLK-KNPQLVRLLEDGETLEELMRLPPEK 267 (627)
T ss_pred hHHhhcccccceEEe-----cCchhhhcCCceeeHHHHHHHHHHHHhhhc-ccc-cCHHHHHHHhCCccHHHHhcCCHHH
Confidence 999999999999999 999999999999999999999987666554 111 1233444443333333344678999
Q ss_pred HHHHHHHHHHccCC--ceecCCC-CCCchhhHHHHHHhhccC
Q 001148 550 LLLNWIQVICEKYD--FRINNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 550 ~LL~W~q~v~~~yg--v~V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
+||+|+|-+.+..| ..|+||+ ++.||.++..|++.+.|.
T Consensus 268 iLLrW~N~HL~kag~~k~~~nFs~DikD~eaY~~LLnqlap~ 309 (627)
T KOG0046|consen 268 ILLRWMNYHLKKAGWKKTVTNFSSDIKDSEAYTHLLNQLAPE 309 (627)
T ss_pred HHHHHHHHHHHhcccceehhhhhhhhccHHHHHHHHHHhccc
Confidence 99999999886654 5899998 999999999999999776
No 8
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.24 E-value=7.3e-12 Score=118.74 Aligned_cols=94 Identities=32% Similarity=0.477 Sum_probs=78.1
Q ss_pred ccccccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCcc
Q 001148 412 YQQCLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAI 490 (1139)
Q Consensus 412 ~~Q~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I 490 (1139)
|.|..+.++ +..|+|+.+||+||+.||+|++.+.++......+ .++.++.++++|++.+++++++.|+.... +
T Consensus 8 Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~-~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~-----~ 81 (103)
T smart00033 8 WVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKV-NASLSRFKKIENINLALSFAEKLGGKLVL-----F 81 (103)
T ss_pred HHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhc-cccccHHHHHHhHHHHHHHHHHcCCeeec-----c
Confidence 445555665 4789999999999999999999999974222222 25677999999999999999999876666 9
Q ss_pred ccccccCCCccchhHHHHHHHH
Q 001148 491 MEDDVANGDKELILSLLWNMFV 512 (1139)
Q Consensus 491 ~a~DIVdG~~k~tLgLLW~li~ 512 (1139)
.++||++|+ +.+++++|+|+.
T Consensus 82 ~~~Dl~~~~-k~~~~v~~~l~~ 102 (103)
T smart00033 82 EPEDLVEGN-KLILGVIWTLIL 102 (103)
T ss_pred CHHHHhhcc-hHHHHHHHHHHh
Confidence 999999999 999999999975
No 9
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.19 E-value=2e-11 Score=116.82 Aligned_cols=98 Identities=27% Similarity=0.468 Sum_probs=82.6
Q ss_pred eccccccccccc-ccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCc
Q 001148 411 SYQQCLLLEYDF-RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTA 489 (1139)
Q Consensus 411 ~~~Q~~l~e~d~-~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~ 489 (1139)
.|.+..+.++.. .|+|+.+||+||+.||+|++.+.++.. ......+.++.++++|++.+|+++++.|++...
T Consensus 8 ~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~--~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~----- 80 (107)
T cd00014 8 RWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLI--DKKKINPLSRFKRLENINLALNFAEKLGVPVVN----- 80 (107)
T ss_pred HHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccc--ccccccccchhhHHHHHHHHHHHHHHcCCceec-----
Confidence 345666777766 799999999999999999999998732 121222678999999999999999999997655
Q ss_pred ccccccc-CCCccchhHHHHHHHHHhh
Q 001148 490 IMEDDVA-NGDKELILSLLWNMFVHLQ 515 (1139)
Q Consensus 490 I~a~DIV-dG~~k~tLgLLW~li~~fq 515 (1139)
+.++||+ +||.+.+|+++|+|+.+|.
T Consensus 81 ~~~~Dl~~~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 81 FDAEDLVEDGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred cCHHHHhhCCCceeeHHHHHHHHHhhC
Confidence 8999999 9999999999999999873
No 10
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.96 E-value=5.6e-10 Score=106.86 Aligned_cols=97 Identities=30% Similarity=0.504 Sum_probs=77.5
Q ss_pred ccccccccc--ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCC-CCchhHHhhHHHHHHHHHH-cCCcccCCCC
Q 001148 412 YQQCLLLEY--DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPS-DTHRKNSVNCSIALQYLRQ-AGVKLYDEDG 487 (1139)
Q Consensus 412 ~~Q~~l~e~--d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~-~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g 487 (1139)
|.+..+... +..|+|+.+||+||+.||.|++.+.++.....++ .|. .+..++++|++.+++++++ .|++..
T Consensus 7 Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~-~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~---- 81 (108)
T PF00307_consen 7 WINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKI-NPNLKSPFDKLENIELALEAAEKKLGIPPL---- 81 (108)
T ss_dssp HHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGS-STSSSSHHHHHHHHHHHHHHHHHHTTSSCT----
T ss_pred HHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhc-cccchhhhHHHHHHHHHHHHHHHHcCCCCC----
Confidence 334444444 5688999999999999999999999985334444 221 2789999999999999998 888765
Q ss_pred Ccccccccc-CCCccchhHHHHHHHHHhh
Q 001148 488 TAIMEDDVA-NGDKELILSLLWNMFVHLQ 515 (1139)
Q Consensus 488 ~~I~a~DIV-dG~~k~tLgLLW~li~~fq 515 (1139)
+.++||+ +|+.+.+|+++|+|+.+|+
T Consensus 82 --~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 82 --LSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp --S-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4899999 9999999999999999986
No 11
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=98.70 E-value=1.2e-08 Score=109.54 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=85.9
Q ss_pred ccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCcccc
Q 001148 413 QQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIME 492 (1139)
Q Consensus 413 ~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a 492 (1139)
+..+|+..+..|+||-+.+.|||.|+-||.+|.|.....+.+...+.+--+|++||+.|++.|++.|..-.. .++
T Consensus 266 vNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~D~GL~kp~-----~rp 340 (365)
T KOG3631|consen 266 VNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMKDGGLEKPK-----VRP 340 (365)
T ss_pred HHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHHccCcCCCC-----CCh
Confidence 333444444589999999999999999999999987777888899999999999999999999998887655 899
Q ss_pred ccccCCCccchhHHHHHHHHHhh
Q 001148 493 DDVANGDKELILSLLWNMFVHLQ 515 (1139)
Q Consensus 493 ~DIVdG~~k~tLgLLW~li~~fq 515 (1139)
+|||+|+.+.||.+++.++-+|.
T Consensus 341 eDIvN~D~KSTLRvLy~LFtKyk 363 (365)
T KOG3631|consen 341 EDIVNKDLKSTLRVLYNLFTKYK 363 (365)
T ss_pred HHhhcccHHHHHHHHHHHHHhhc
Confidence 99999999999999999998873
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.55 E-value=1.7e-07 Score=116.91 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=120.5
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh---h-hhhhhhhHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 001148 677 EDAVRKFKSLQAWWQKMAEQNNR-SASQRLSSTLQN---F-STDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNF 751 (1139)
Q Consensus 677 e~~aRaA~~IQawwR~~~aRk~~-~~~~~Aa~~IQ~---~-~r~k~~~~iqR~~r~l~~~~~AAi~IQs~~Rg~laRr~y 751 (1139)
.+++.+|..||+.+|....++.. ..+.. +...|- . ...+..-.+ +.. .-.....||..||..||||..|+.|
T Consensus 753 rdAa~aa~r~q~vfr~~~~~~~~a~~i~~-~~~~~i~~~~~~~m~~~~a~-~~~-~~r~~~~aa~~iq~~f~~yk~r~~~ 829 (975)
T KOG0520|consen 753 RDAAQAAARIQAVFRAQSFQKKQAREIMD-ATKEQISEELAVSMKASSAF-SMC-DDRSDPAAASRIQKKFRGYKQRKEF 829 (975)
T ss_pred cchHHHHHhhhhhhhhhhhhhhhHHHHHh-hcchhhhhhhhhhhhcccch-hcC-ccccchhHHHHhhhhhhhHHhhhhh
Confidence 45777999999999976554332 22211 111111 0 010000000 000 0113467889999999999999999
Q ss_pred HHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001148 752 LKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAA 831 (1139)
Q Consensus 752 ~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi~IQ~~~Rg~laRr~y~r~r~AA 831 (1139)
..++.- ++.||+++||+..|+.|..+----...+....++..+|..+|||..+......-.|+
T Consensus 830 l~tr~p-----------------~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~ 892 (975)
T KOG0520|consen 830 LSTRQP-----------------IVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAA 892 (975)
T ss_pred cccCCc-----------------cccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccccc
Confidence 998874 589999999999998887643111111233457888999999998888888777788
Q ss_pred HHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhH
Q 001148 832 TMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGW 903 (1139)
Q Consensus 832 i~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk~~~~AAi~IQs~~Rg~ 903 (1139)
+.||..+|-|..-++. -++++..|++.||+.+|.+.++.+.++++.++|.+.+.+
T Consensus 893 t~~e~~yd~yKq~~~~-----------------~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~~~~~~~~~~ 947 (975)
T KOG0520|consen 893 TVIEDCYDFYKQLRKQ-----------------TEERLTRAVVRVQSMFRSPKAQQQYRRLLLVYEQYQESY 947 (975)
T ss_pred chHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999888877665432 234555666666666666666655566666666555544
No 13
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.54 E-value=3.6e-07 Score=114.07 Aligned_cols=90 Identities=24% Similarity=0.304 Sum_probs=81.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 001148 729 MLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAA 808 (1139)
Q Consensus 729 ~~~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AA 808 (1139)
.....+++.||+.+|||..|+.|.++|.+ ++.||+++||+++|+ ..+ . ..||
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~-----------------~~~~Q~~~rG~~~r~--~~~-~--------~~aa 721 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSA-----------------VIIIQAYSRGVLARR--ETE-R--------EAAA 721 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHhhhhhHHHHHH--hhH-H--------HHHH
Confidence 35788899999999999999999999995 699999999999998 222 1 3599
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHh
Q 001148 809 LKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRA 846 (1139)
Q Consensus 809 i~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~ 846 (1139)
+.||+.||++..|++|...+.+++.||+.+|++.+|..
T Consensus 722 i~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 722 IGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARNE 759 (862)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999874
No 14
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.40 E-value=8.1e-06 Score=102.31 Aligned_cols=91 Identities=30% Similarity=0.281 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHH
Q 001148 802 DVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWK 881 (1139)
Q Consensus 802 ~~~~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R 881 (1139)
.....+++.||+.+|+|..|+.|...+.+++.||+.+||+++|+..
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---------------------------------- 715 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---------------------------------- 715 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh----------------------------------
Confidence 3445688899999999999999999999999999999999998721
Q ss_pred HHHHHhhhhhHHHHHHHHHhhHHHHHHHhhccchhHhhHHHHhhhHHHHHH
Q 001148 882 NVLLLKLKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKAS 932 (1139)
Q Consensus 882 ~~l~rk~~~~AAi~IQs~~Rg~laRr~~~~~~~Aai~IQa~wRg~~aRK~~ 932 (1139)
. +..||+.||+.+|++..|++|.....+++.||+..|++.+|.+-
T Consensus 716 -----~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~e~ 760 (862)
T KOG0160|consen 716 -----E-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARNEE 760 (862)
T ss_pred -----H-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 0 25678888888888888888888888888888888888888743
No 15
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.35 E-value=1.1e-06 Score=110.05 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHH
Q 001148 805 IKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVL 884 (1139)
Q Consensus 805 ~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l 884 (1139)
..||..||..||+|..|+.|...+.-++.||+++||+..|+.|... ++.-..++....++..+|..+|++.
T Consensus 810 ~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki---------~wSv~~lek~~lrwR~k~~g~Rgfk 880 (975)
T KOG0520|consen 810 PAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKI---------TWSVGVLEKLILRWRRKGKGFRGFK 880 (975)
T ss_pred hhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhhee---------chhhhHHHHHHHHHHHhhhhhcccc
Confidence 3477777777777777777777777777777777777777776321 1122234455566777888888877
Q ss_pred HHh---hhhhHHHHHHHHHhhHHHH--HHHhhccchhHhhHHHHhhhHHHHHHHH
Q 001148 885 LLK---LKTKSAIIIQSHIRGWTAR--RRAYKEKHHIVLIQSYWRGCLARKASSC 934 (1139)
Q Consensus 885 ~rk---~~~~AAi~IQs~~Rg~laR--r~~~~~~~Aai~IQa~wRg~~aRK~~~~ 934 (1139)
.+. .+..||++||..+|-|..- ..++++.+|++.||+.+|.+.++.++++
T Consensus 881 ~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR 935 (975)
T KOG0520|consen 881 GRALFEEQETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRR 935 (975)
T ss_pred cccchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 664 3566899999999999877 4478889999999999999999977774
No 16
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.09 E-value=8.2e-07 Score=84.97 Aligned_cols=48 Identities=33% Similarity=0.540 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHccC--CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhh
Q 001148 548 LDLLLNWIQVICEKY--DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDI 604 (1139)
Q Consensus 548 ~~~LL~W~q~v~~~y--gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl 604 (1139)
++.|+.|+|.++..+ +.+|+||. +|+||.+||.|++.+ .|..++...+
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l---------~p~~i~~~~~ 51 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKL---------FPGTIDLKKI 51 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHH---------STTSSSGGGS
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHH---------hhccchhhhc
Confidence 367999999999988 78999997 999999999999999 5665555544
No 17
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.08 E-value=0.00017 Score=93.26 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=112.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 001148 729 MLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAA 808 (1139)
Q Consensus 729 ~~~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AA 808 (1139)
...+..++.||++|||+..|++|.+..+.+ ..||..-+|+..++.... .....++
T Consensus 742 ~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i-----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 796 (1463)
T COG5022 742 AKLDNIATRIQRAIRGRYLRRRYLQALKRI-----------------KKIQVIQHGFRLRRLVDY--------ELKWRLF 796 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcccchhhhccc--------chHHHhH
Confidence 467899999999999999999999877753 566777777777644332 2345699
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHh
Q 001148 809 LKIQSSWRNFIASRSLQKNYFAATMIQ-SHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLK 887 (1139)
Q Consensus 809 i~IQ~~~Rg~laRr~y~r~r~AAi~IQ-s~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk 887 (1139)
+++|..|+....|+.|......+..+| ..++....+... ...
T Consensus 797 ~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-------------------------------------e~~ 839 (1463)
T COG5022 797 IKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-------------------------------------EVE 839 (1463)
T ss_pred HHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------------------------------HHH
Confidence 999999999999999999999999999 444433332211 012
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHhhccchhHhhHHHHhhhHHHHHHHHHHH
Q 001148 888 LKTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSCQLL 937 (1139)
Q Consensus 888 ~~~~AAi~IQs~~Rg~laRr~~~~~~~Aai~IQa~wRg~~aRK~~~~kl~ 937 (1139)
....+++.+|++||.+..++++..+.+.++.+|..||--.+++++...-.
T Consensus 840 ~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~ 889 (1463)
T COG5022 840 FSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889 (1463)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888889999999998888888888889999988888887764333
No 18
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.99 E-value=2.1e-06 Score=79.86 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=39.1
Q ss_pred HHHHHHccCCceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhh
Q 001148 554 WIQVICEKYDFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDIL 605 (1139)
Q Consensus 554 W~q~v~~~ygv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~ 605 (1139)
|++..+..++..|+||+ ||+||+++|+|||+| .|++++.+++.
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y---------~P~~l~~~~I~ 44 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFY---------CPQLLPLEDIC 44 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHh---------CcceecHhHcc
Confidence 78888899999999998 999999999999999 78888887775
No 19
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=97.89 E-value=4.7e-06 Score=79.72 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHccCCc-eecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhh
Q 001148 547 LLDLLLNWIQVICEKYDF-RINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLS 624 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv-~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~ 624 (1139)
.++.+++|+|.++..++. .|+||+ +|+||.+||.|++.+. |+.+...... .....+..-++..++..
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~---------p~~~~~~~~~--~~~~~~~~~Ni~~~l~~ 70 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLS---------PDLIDKKKIN--PLSRFKRLENINLALNF 70 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHC---------cccccccccc--ccchhhHHHHHHHHHHH
Confidence 357899999999999976 899998 9999999999999994 4444322210 00111111233333333
Q ss_pred hHHHHhhhhhhcCcccc-cc-ccCC-CCCCccCCCceecccc
Q 001148 625 SQLIVKKNMDQLNLHKL-LG-CNCQ-SPERRHSNPNCRIVDS 663 (1139)
Q Consensus 625 s~l~~k~~l~~lgi~~l-L~-v~~~-~pd~r~~~mtyv~~~~ 663 (1139)
+ +++|++.. .+ -|.- .++.+.+ ++|++..+
T Consensus 71 ~--------~~~gi~~~~~~~~Dl~~~~n~~~v-l~~l~~l~ 103 (107)
T cd00014 71 A--------EKLGVPVVNFDAEDLVEDGDEKLV-LGLLWSLI 103 (107)
T ss_pred H--------HHcCCceeccCHHHHhhCCCceee-HHHHHHHH
Confidence 3 45888776 43 2333 6666665 46655443
No 20
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=97.86 E-value=2.6e-05 Score=90.24 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=107.8
Q ss_pred ccchhHHHhhhHHHHHHHHHHhcCCCcc-cccccc-CC----CCchhHHhhHHHHHHHHHHcCCcccCCCCCcccccccc
Q 001148 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSI-LTKIVV-PS----DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVA 496 (1139)
Q Consensus 423 ~V~nL~~DLrDGv~L~rLlElL~~~~~~-~~kl~~-p~----~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIV 496 (1139)
.|+|++.|+|||..|+..++...+.-.. ...++. |+ .+|+...+|++.|.++-...|+++++ |..-||+
T Consensus 396 ~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~nyavdlG~~~gf~~v~-----ik~le~~ 470 (612)
T COG5069 396 EITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENYAVDLGITEGFSLVG-----IKGLEIL 470 (612)
T ss_pred hhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccchhhhhhhhcCeeeee-----echhhhh
Confidence 4889999999999999999887754222 222222 32 36999999999999999999999998 9999999
Q ss_pred CCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCC--ceecCCC--CC
Q 001148 497 NGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYD--FRINNFS--SL 572 (1139)
Q Consensus 497 dG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~yg--v~V~NFt--S~ 572 (1139)
||.+ .+++|.|+++..- +... . ..++.. +-..+. .-+..|.+.....+| -.+..|. +-
T Consensus 471 ~~~r-~k~tl~~q~l~~~-t~~f-~--------h~lkk~------~~~lsd-sd~~a~l~slgl~~dk~egi~~F~~~a~ 532 (612)
T COG5069 471 DGIR-LKLTLVWQVLRSN-TALF-N--------HVLKKD------GCGLSD-SDLCAWLGSLGLKGDKEEGIRSFGDPAG 532 (612)
T ss_pred hhhH-HHHHHHHHHHHHH-HHHH-H--------HHHhcC------CCCCCH-HHHHHHHHHhccccCCccceeeccCCcc
Confidence 9999 9999999998642 1110 0 111111 112233 448899998887776 3566774 55
Q ss_pred Cc-hhhHHHHHHhhccCCCCCCCccccccchhhh
Q 001148 573 TD-GKAIWCLLDFYFRKEPCGSCTSKVLQMSDIL 605 (1139)
Q Consensus 573 ~D-Graf~aLI~~~~p~~~lg~~~P~ll~~~dl~ 605 (1139)
+. |..+.-+++-+ .|++.|++++.
T Consensus 533 s~~gv~yl~v~~~i---------~sel~D~d~v~ 557 (612)
T COG5069 533 SVSGVFYLDVLKGI---------HSELVDYDLVT 557 (612)
T ss_pred ccccchHHHHHHHH---------hhhhcChhhhh
Confidence 55 77788888888 67777766554
No 21
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=97.63 E-value=3e-05 Score=73.44 Aligned_cols=41 Identities=32% Similarity=0.521 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccC
Q 001148 548 LDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 548 ~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
++.++.|+|.++..+ +..|+||+ +|+||.+||+|+|.+.|.
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~ 44 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPG 44 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCC
Confidence 467999999999988 58999998 999999999999999553
No 22
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.41 E-value=0.024 Score=74.32 Aligned_cols=134 Identities=20% Similarity=0.072 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHH
Q 001148 803 VGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKN 882 (1139)
Q Consensus 803 ~~~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~ 882 (1139)
.....++.||++|||+..|++|.........||...+|+..++.. .+.....+++.+|..|+.
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~ 805 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV-----------------DYELKWRLFIKLQPLLSL 805 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc-----------------ccchHHHhHHHhhHHhHH
Confidence 456799999999999999999999998888999988888887654 234556788999999998
Q ss_pred HHHHhh---hhhHHHHHH-HHHhhHHHHHH--HhhccchhHhhHHHHhhhHHHHHHHHHH-----HHHHHHHHHHHhhHH
Q 001148 883 VLLLKL---KTKSAIIIQ-SHIRGWTARRR--AYKEKHHIVLIQSYWRGCLARKASSCQL-----LDLRLRIQISATNMD 951 (1139)
Q Consensus 883 ~l~rk~---~~~AAi~IQ-s~~Rg~laRr~--~~~~~~Aai~IQa~wRg~~aRK~~~~kl-----~~lR~Rlq~~~~~v~ 951 (1139)
...|.. ....+..+| ..++....+.. ......+.+.+|.+||.+..++++.... ..-..|++.+.+.+.
T Consensus 806 ~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~ 885 (1463)
T COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQ 885 (1463)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 888765 345677778 66777777663 5566889999999999999999986322 222335555555444
Q ss_pred HH
Q 001148 952 EE 953 (1139)
Q Consensus 952 ee 953 (1139)
+.
T Consensus 886 e~ 887 (1463)
T COG5022 886 EL 887 (1463)
T ss_pred HH
Confidence 43
No 23
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=97.30 E-value=1.8e-05 Score=98.84 Aligned_cols=146 Identities=18% Similarity=0.059 Sum_probs=105.9
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCc
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
++.+.+|..|+.||++|..++++++... ..++..--.. +++++||+.|++++...+.+++| |+..+|+|++.
T Consensus 43 G~~~~slk~~~~dg~~~p~~v~vl~~~~--~skv~~~~p~-~q~~~~v~~a~~~ft~d~r~~~n-----igs~hivd~v~ 114 (1113)
T KOG0518|consen 43 GFYILSLKYDGSDGVNLPSLVQVLSAVD--TSKVKKKGPG-IQGLHNVREALNKFTVDNRKETN-----IGSAHIVDHVV 114 (1113)
T ss_pred cceeEEEEecCccccccceeeEEeeccc--cceeEEecCC-ccCcchhhhhhhhhhhccceeec-----cCCcccccccc
Confidence 4568889999999999999999999762 3344332223 89999999999999988888888 99999999999
Q ss_pred cchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCceecCCC-CCCchhhHH
Q 001148 501 ELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFS-SLTDGKAIW 579 (1139)
Q Consensus 501 k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFt-S~~DGraf~ 579 (1139)
+++++++|+++.++ .+.+. ..+.+ ..+ ...-..+.++..|-. -+...+.+.||+ +|.||+|+.
T Consensus 115 ~~~g~~~~~~v~~~-~dg~y---~~k~~-------p~e---~~~h~~e~~~~e~~~--~~sP~~~~v~~~td~n~~~Alg 178 (1113)
T KOG0518|consen 115 KLIGSLTWTLVQDY-GDGIY---KTKRT-------PKE---KGEHEVEVLYDEKPV--PASPFVVKVNEGTDWNDVQALG 178 (1113)
T ss_pred cccccceeEeeecc-CCcce---eeecC-------chh---ccchhhhhhhccccc--ccCCceeccccccCcccceEec
Confidence 99999999999988 33221 00000 000 000011233444533 234567889998 999999999
Q ss_pred HHHHhhccCCC
Q 001148 580 CLLDFYFRKEP 590 (1139)
Q Consensus 580 aLI~~~~p~~~ 590 (1139)
+++..-.|+.+
T Consensus 179 ~~le~~~vg~p 189 (1113)
T KOG0518|consen 179 PGLESARVGKP 189 (1113)
T ss_pred cchhhcccCCC
Confidence 99999888754
No 24
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.14 E-value=0.0023 Score=77.53 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=55.0
Q ss_pred hHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001148 719 INMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEK 798 (1139)
Q Consensus 719 ~~iqR~~r~l~~~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er 798 (1139)
++-+|+. ....-++.||+.||||++|.+|++++.+ +++|+ |||.+..+
T Consensus 687 lEe~r~~----~l~~lvtllQK~~RG~~~R~ry~rmka~-----------------~~ii~-wyR~~K~k---------- 734 (1001)
T KOG0164|consen 687 LEEQRAE----RLPSLVTLLQKAWRGWLARQRYRRMKAS-----------------ATIIR-WYRRYKLK---------- 734 (1001)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HHHHHHHH----------
Confidence 3445543 4567899999999999999999999985 57777 88855432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhhhhH
Q 001148 799 SDSDVGIKAALKIQSSWRNFIASRSLQKNY 828 (1139)
Q Consensus 799 ~r~~~~~~AAi~IQ~~~Rg~laRr~y~r~r 828 (1139)
.++..||+.+||+..++.|.+..
T Consensus 735 -------s~v~el~~~~rg~k~~r~ygk~~ 757 (1001)
T KOG0164|consen 735 -------SYVQELQRRFRGAKQMRDYGKSI 757 (1001)
T ss_pred -------HHHHHHHHHHHhhhhccccCCCC
Confidence 36778999999999998887543
No 25
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=97.01 E-value=0.0029 Score=69.12 Aligned_cols=177 Identities=18% Similarity=0.268 Sum_probs=113.0
Q ss_pred ccCCccccHHHHHHHHhccccccCCCChhHHhhhccceeecccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccc
Q 001148 372 SVQSNVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSIL 451 (1139)
Q Consensus 372 ~~~s~~KsS~~~l~~~~~~~~l~g~gd~~r~L~~lg~~~~~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~ 451 (1139)
++|..++.-..||..|+ ++.|.+|--+.|+ |.+||-||.+|-+|+|.|.+.
T Consensus 83 r~DpK~~el~kvLi~Wi-N~~L~~erIvVr~------------------------LeEDlfDGqilqkL~ekL~~~---- 133 (365)
T KOG3631|consen 83 RKDPKFEELVKVLIDWI-NDVLVPERIVVRS------------------------LEEDLFDGQILQKLFEKLAAL---- 133 (365)
T ss_pred ccChhHHHHHHHHHHHH-HHhhcchhhhHHh------------------------hHHhhhhhHHHHHHHHHHHhh----
Confidence 45667888899999997 5888888555555 489999999999999999976
Q ss_pred cccccCC-----CCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHHHHHHHHHhhhhhhhcc----
Q 001148 452 TKIVVPS-----DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLLWNMFVHLQLPLMINK---- 522 (1139)
Q Consensus 452 ~kl~~p~-----~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~---- 522 (1139)
++..+- ++-.||++- +|+...+ -..+... ...-+.+-|-+.+.-.||-|+-.+..||+.+.-+..
T Consensus 134 -klev~evtqse~~QkqKLq~---Vleavnr-~L~~~~~-q~kWsvdsIh~Kdl~ailhLLVaLa~~frapirlPdnV~v 207 (365)
T KOG3631|consen 134 -KLEVAEVTQSEIGQKQKLQT---VLEAVNR-SLQLPEW-QAKWSVDSIHNKDLVAILHLLVALAKHFRAPIRLPDNVQV 207 (365)
T ss_pred -hccchhhhhhhHHHHHHHHH---HHHHHHH-HhcCchh-hhccchhhhccchHHHHHHHHHHHHHHcCCCccCCCceEE
Confidence 444443 234455544 4444432 1111110 011355666667777799999999999976543211
Q ss_pred --------------cchhhHHHhhc----cCCCCc-------cccccc-cHHHHHHHHHHHHHccCCceecCCC-CCCch
Q 001148 523 --------------KHLTEEICKIR----GTNMDN-------LNIFDS-ALLDLLLNWIQVICEKYDFRINNFS-SLTDG 575 (1139)
Q Consensus 523 --------------~~l~~Ei~~l~----~~~~~~-------~~~~~~-~~~~~LL~W~q~v~~~ygv~V~NFt-S~~DG 575 (1139)
..+.++|+... +..+.. ..+++. ..++.|+..||......|++|+|+. .|+||
T Consensus 208 ~Vvvvqk~~g~lks~~i~EqlT~~tt~l~~~~~rDaFDtLFd~aPdKln~VK~sli~FvNkhLnklnLeVt~LdtQFaDG 287 (365)
T KOG3631|consen 208 QVVVVQKREGGLKSEKIVEQLTTYTTDLDGRPERDAFDTLFDHAPDKLNVVKKSLITFVNKHLNKLNLEVTELDTQFADG 287 (365)
T ss_pred EEEEEEeccccchHHHHHHHHhhhhHhhcCCCchhhHHHHHhhCcHHHHHHHHHHHHHHHHHhhhccceeehhhhhhccc
Confidence 11223333211 111100 001111 2568899999999999999999996 99999
Q ss_pred hhHHHHHH
Q 001148 576 KAIWCLLD 583 (1139)
Q Consensus 576 raf~aLI~ 583 (1139)
..+.-|+-
T Consensus 288 V~LvLL~G 295 (365)
T KOG3631|consen 288 VYLVLLMG 295 (365)
T ss_pred hHHHHHHH
Confidence 88777664
No 26
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.96 E-value=0.00094 Score=45.91 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001148 733 NAAKVIKFHFRGWIERRNFL 752 (1139)
Q Consensus 733 ~AAi~IQs~~Rg~laRr~y~ 752 (1139)
.||+.||++||||++|++|.
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46777777777777777663
No 27
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.90 E-value=0.0056 Score=74.37 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhH
Q 001148 803 VGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSS 841 (1139)
Q Consensus 803 ~~~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~ 841 (1139)
+...-++.||++||||++|.+|++++.+++.|+ |||.+
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~ 731 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRY 731 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 345578899999999999999999998888888 77733
No 28
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.48 E-value=0.0029 Score=43.46 Aligned_cols=18 Identities=44% Similarity=0.822 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001148 807 AALKIQSSWRNFIASRSL 824 (1139)
Q Consensus 807 AAi~IQ~~~Rg~laRr~y 824 (1139)
||+.||+.||||++|+.|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455555555555555444
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.06 E-value=0.053 Score=51.77 Aligned_cols=103 Identities=26% Similarity=0.310 Sum_probs=80.6
Q ss_pred hhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccc
Q 001148 969 SMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQG 1048 (1139)
Q Consensus 969 ~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~ 1048 (1139)
...+......++..|..++..++.++..+++.|++..+..++.. ++.+|..+++..|.||+..+......+-..+
T Consensus 17 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 17 SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-----EDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-----CCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 34445555667778888888899999999999999999998875 6899999999999999998876666555566
Q ss_pred hHHHHHHHHHhhccCccch-HHHHHHHhhC
Q 001148 1049 SVQTIMWELVRNKEEGYFI-AAEILNKICS 1077 (1139)
Q Consensus 1049 ~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~ 1077 (1139)
.+..+ .+++.+.+..+.. +|.+|..||+
T Consensus 92 ~l~~l-~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 92 GVPKL-VNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ChHHH-HHHHhcCCHHHHHHHHHHHHHhhC
Confidence 67665 7777766555554 7788888774
No 30
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.89 E-value=0.0082 Score=43.45 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 001148 732 GNAAKVIKFHFRGWIERRNF 751 (1139)
Q Consensus 732 ~~AAi~IQs~~Rg~laRr~y 751 (1139)
..+|+.||+.||||++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777766
No 31
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.89 E-value=0.36 Score=63.63 Aligned_cols=142 Identities=19% Similarity=0.155 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHhhhhhhHH-----HHHHHHHHHhhHHHHHhhccc
Q 001148 776 TDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYF-----AATMIQSHFRSSSHHRAAIPS 850 (1139)
Q Consensus 776 i~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi~IQ~~~Rg~laRr~y~r~r~-----AAi~IQs~~Rg~laRr~~~~~ 850 (1139)
...+++++|++.+....-...+- .-+...=+-.|.-.||...+...-.... --.++|+..||+..|-.+..
T Consensus 481 ~k~~~~~~~~l~~~~~~~~~ee~---~~~~~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~- 556 (1401)
T KOG2128|consen 481 MKWLAYIYGNLVREAKKWLLEEL---HFEYSSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRS- 556 (1401)
T ss_pred hhhHHHhhhhhhhhhhccccHHH---HHHHHHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHh-
Confidence 55667777777664322111100 0111122235666666655543322221 22334777777766655411
Q ss_pred ccchhhhhhhhhhhhH-HHhhHhHHHHHHHHHHHHHH--h-----hhhhHHHHHHHHHhhHHHHHHH-------hhccch
Q 001148 851 GSNFNTLRGCFQSFEL-SIFLFSVVKLQRWWKNVLLL--K-----LKTKSAIIIQSHIRGWTARRRA-------YKEKHH 915 (1139)
Q Consensus 851 iq~lr~~R~~l~R~~~-~~~~~AAi~IQ~~~R~~l~r--k-----~~~~AAi~IQs~~Rg~laRr~~-------~~~~~A 915 (1139)
+..+ ..+......||+.|||++.- + -...-++.+|+..||+++|+.+ .....+
T Consensus 557 ------------~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~ 624 (1401)
T KOG2128|consen 557 ------------RLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTK 624 (1401)
T ss_pred ------------hhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 1111 23456677788888877731 1 1455678888888888888774 345667
Q ss_pred hHhhHHHHhhhHHHHHHH
Q 001148 916 IVLIQSYWRGCLARKASS 933 (1139)
Q Consensus 916 ai~IQa~wRg~~aRK~~~ 933 (1139)
+++||++.|++..|+.|.
T Consensus 625 ~i~iqs~~r~f~~r~~y~ 642 (1401)
T KOG2128|consen 625 IIKIQSKIRKFPNRKDYK 642 (1401)
T ss_pred HHHHHHHHHhcccchHHH
Confidence 888888888888888774
No 32
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=95.85 E-value=0.011 Score=55.23 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=59.3
Q ss_pred cccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccc-cCCCCchhHHhhHHHHHHHHHHc-CCcccCCCCCccc
Q 001148 414 QCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIV-VPSDTHRKNSVNCSIALQYLRQA-GVKLYDEDGTAIM 491 (1139)
Q Consensus 414 Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~-~p~~~R~~ki~Nv~~AL~~lk~~-gi~l~~~~g~~I~ 491 (1139)
+.--..+...|.|+..||+||..||.|+.-.-++.-....+. .+..+-...++|.+...+|-.+. |.+... ..
T Consensus 3 ~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~-----l~ 77 (85)
T PF11971_consen 3 NARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCH-----LE 77 (85)
T ss_pred CcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCc-----CC
Confidence 333345667899999999999999999998887733333343 25557889999999999998874 666554 67
Q ss_pred cccccC
Q 001148 492 EDDVAN 497 (1139)
Q Consensus 492 a~DIVd 497 (1139)
+||+.+
T Consensus 78 ~edl~~ 83 (85)
T PF11971_consen 78 PEDLLY 83 (85)
T ss_pred HHHHhc
Confidence 888765
No 33
>PTZ00014 myosin-A; Provisional
Probab=94.91 E-value=0.049 Score=70.12 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 001148 731 PGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDK 790 (1139)
Q Consensus 731 ~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~ 790 (1139)
....++.||++||||++|++|.+.+.+ +++||++||||+.++.
T Consensus 776 ~~~~~~~iq~~~r~~~~r~~~~~~~~~-----------------~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 776 WEPLVSVLEALILKIKKKRKVRKNIKS-----------------LVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhc
Confidence 356788999999999999999988774 6899999999988754
No 34
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.81 E-value=0.42 Score=62.97 Aligned_cols=148 Identities=20% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 001148 735 AKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSS 814 (1139)
Q Consensus 735 Ai~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi~IQ~~ 814 (1139)
...-+..++|++.+............|- ..-+..|+..||+..+.....+-.. ....--.+||+.
T Consensus 480 ~~k~~~~~~~~l~~~~~~~~~ee~~~~~----------~~~is~q~~v~~i~~~~~l~~~~~s-----~~~s~~~~~qa~ 544 (1401)
T KOG2128|consen 480 EMKWLAYIYGNLVREAKKWLLEELHFEY----------SSLISLQALVRGIVLRSALFSLYPS-----LGKSEKLRIQAS 544 (1401)
T ss_pred hhhhHHHhhhhhhhhhhccccHHHHHHH----------HHHhhHHHHhhhhHHHhhHHHHhhh-----hccccchhhhhh
Confidence 3566777777777776555544432221 1123366666666665443322100 001122333666
Q ss_pred HHHHHHHhhhhhh-------HHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHh
Q 001148 815 WRNFIASRSLQKN-------YFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLK 887 (1139)
Q Consensus 815 ~Rg~laRr~y~r~-------r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk 887 (1139)
.||+..|..+... ......||+.|||++. ++. ......-....++.+|++.|+++.|+
T Consensus 545 ~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~------------~~~~~~~~~~evv~~qs~~R~~lsrk 609 (1401)
T KOG2128|consen 545 ERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIP------------RDVYLDSAKKEVVKFQSLTRGALSRK 609 (1401)
T ss_pred ccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hch------------HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6666665544322 2355666777776664 110 01112234455666677777666665
Q ss_pred h----------hhhHHHHHHHHHhhHHHHHHHhhc
Q 001148 888 L----------KTKSAIIIQSHIRGWTARRRAYKE 912 (1139)
Q Consensus 888 ~----------~~~AAi~IQs~~Rg~laRr~~~~~ 912 (1139)
. ...++++||+.+|++..|..|...
T Consensus 610 ~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 610 KYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 2 456788999999999999887643
No 35
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.76 E-value=0.033 Score=40.31 Aligned_cols=18 Identities=39% Similarity=0.857 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001148 807 AALKIQSSWRNFIASRSL 824 (1139)
Q Consensus 807 AAi~IQ~~~Rg~laRr~y 824 (1139)
+|+.||+.||||.+|+.|
T Consensus 5 aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 5 AAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555555555444
No 36
>PTZ00014 myosin-A; Provisional
Probab=94.71 E-value=0.039 Score=70.98 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHh
Q 001148 805 IKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRA 846 (1139)
Q Consensus 805 ~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~ 846 (1139)
...++.||++||||++|+.|.+.+.++++||++||+|+.++.
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999998875
No 37
>KOG0516 consensus Dystonin, GAS (Growth-arrest-specific protein), and related proteins [Cytoskeleton]
Probab=94.56 E-value=0.0098 Score=79.05 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=76.2
Q ss_pred cccccccccchhHHHhhhHHHHHHHHHHhcCCCcccc-ccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCcccccc
Q 001148 416 LLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILT-KIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDD 494 (1139)
Q Consensus 416 ~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~-kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~D 494 (1139)
.++...-+|.++++||++ ...+.++++..+...... ........+++.+.||+.+|+++++..+.+++-. |..++
T Consensus 86 ~l~~~~~~ve~~~~~l~~-~~~i~~l~~~e~~~~~~~~~~~~~~~~~~~~l~n~q~~l~~~k~~~~el~~~~---~~~~~ 161 (1047)
T KOG0516|consen 86 ELEKVMKHVEDLYEDLRD-LNSISLLEVEELLVAVRKQEPEQDRQERLHDLENVQAALTALKEDLAELVNFL---IRDAE 161 (1047)
T ss_pred HHHHhccchhHHhhhhhh-hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhHHHHHhhhccchHHHHHHHHhh---cccch
Confidence 445556789999999996 555566665554311100 1112344578999999999999999888888732 78999
Q ss_pred ccCCCccchhHHHHHHHHHhhhhhhh
Q 001148 495 VANGDKELILSLLWNMFVHLQLPLMI 520 (1139)
Q Consensus 495 IVdG~~k~tLgLLW~li~~fqi~~l~ 520 (1139)
|.+|+++.+|+++|.|+.+||+..++
T Consensus 162 ~~~~~~~~~l~~~~ei~l~~Q~~~ll 187 (1047)
T KOG0516|consen 162 IKLGNPELGLGLIWEIILHFQYVKLL 187 (1047)
T ss_pred hhccchhhhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999996654
No 38
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=94.55 E-value=0.066 Score=56.89 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=53.3
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
.|+-+-|+||++||+|++.|.+. +.+....+.+-++.++|++.=+.+++.-|++-++ ..-+.|+.+|.
T Consensus 46 ~~f~~~LKDG~iLCkl~N~l~p~---~~~~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~~d----~FqtvDLfE~k 113 (193)
T KOG2046|consen 46 GDFQDLLKDGVILCKLINKLYPG---VVKKINESKMAFVQMENISNFIKAAKKYGVPEVD----LFQTVDLFEGK 113 (193)
T ss_pred cCHHHHHcchHHHHHHHHHhCcC---cccccccccccHHHHHHHHHHHHHHHhcCCChhh----cccccccccCC
Confidence 46778899999999999999984 2233337788899999999999999999987665 13455666654
No 39
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.19 E-value=0.16 Score=62.77 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=6.8
Q ss_pred HhhHHHHHHHHH
Q 001148 465 SVNCSIALQYLR 476 (1139)
Q Consensus 465 i~Nv~~AL~~lk 476 (1139)
++|+..-|+|-+
T Consensus 781 L~~ilFKl~fse 792 (1102)
T KOG1924|consen 781 LSAILFKLTFSE 792 (1102)
T ss_pred HHHHHHHhhHHH
Confidence 555555555554
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.68 E-value=0.82 Score=43.48 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=62.7
Q ss_pred HHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcC-cchhhhhhcccchHHHHHHHHHhhccCccc-hHHHHHH
Q 001148 996 KLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARY-PHLIDVLIDSQGSVQTIMWELVRNKEEGYF-IAAEILN 1073 (1139)
Q Consensus 996 ~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky-~~~~~~v~~~~~~v~t~~~~ll~~k~~~~f-~a~~ll~ 1073 (1139)
.+++.|.+..+..++..-| .++...++..|.|++.. +...+... ..+.++.+ .+++++.+..+. .++..|.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l-~~~l~~~~~~v~~~a~~~L~ 74 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-----ENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPAL-VQLLKSEDEEVVKAALWALR 74 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-----HHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHH-HHHHhCCCHHHHHHHHHHHH
Confidence 3678899999999887554 79999999999999999 44444444 36888887 788887664444 4889999
Q ss_pred HhhCCCchhhH
Q 001148 1074 KICSTHKGVEA 1084 (1139)
Q Consensus 1074 ~l~~~~~~~~~ 1084 (1139)
.||.+......
T Consensus 75 ~l~~~~~~~~~ 85 (120)
T cd00020 75 NLAAGPEDNKL 85 (120)
T ss_pred HHccCcHHHHH
Confidence 99998764433
No 41
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.48 E-value=0.52 Score=58.62 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.4
Q ss_pred hhhHHH
Q 001148 107 EQSLKS 112 (1139)
Q Consensus 107 e~~~~~ 112 (1139)
|.+||.
T Consensus 623 e~~Mrr 628 (1102)
T KOG1924|consen 623 EVPMRR 628 (1102)
T ss_pred CCcccc
Confidence 334443
No 42
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=24 Score=44.67 Aligned_cols=111 Identities=12% Similarity=0.112 Sum_probs=60.2
Q ss_pred hhHHhhhccHHHHHHH---HhhhhHHHHHHH-HHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHH
Q 001148 982 TLDMATENSQNCCEKL---VAAGAVDTLLKL-IGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWEL 1057 (1139)
Q Consensus 982 ~Le~~Trls~~cCe~l---~~sgAv~~i~~l-ir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~l 1057 (1139)
.-++-|.....||..| +|.|.-+.+-.. +++.||--|+..+-.-+...- |+=+|-- .+|-.+-++.+.
T Consensus 187 ~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~~Tl~a~~s--l~~rpvk------~~nfsd~l~~~f 258 (1096)
T KOG4427|consen 187 FEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVITTLAATFS--LRLRPVK------QPNFSDNLVEEF 258 (1096)
T ss_pred hhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceeeeehhhhhh--hcccccc------CCchHHHHHHHH
Confidence 3445566677899876 788887766654 499999999987766544332 2222211 234433332222
Q ss_pred HhhccCccchHH-HHHHHhhCCCchhhHHhhChHHHHHHHHHHHHHhhh
Q 001148 1058 VRNKEEGYFIAA-EILNKICSTHKGVEAISKLPAHLKRLNSLVDELTRK 1105 (1139)
Q Consensus 1058 l~~k~~~~f~a~-~ll~~l~~~~~~~~~v~~~p~~~~rl~sl~~l~~rk 1105 (1139)
+.+ -.+| .|+-.|-+.-..+-+..+.-...+++-++....++-
T Consensus 259 v~~-----IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~~l~d~~~~ 302 (1096)
T KOG4427|consen 259 VSL-----ILTVPALVCHLPSALPQALEHLSSLMLLDKILNILRDMENS 302 (1096)
T ss_pred HHH-----HhchhHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 211 0133 444444443344444455555666666666666554
No 43
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=87.38 E-value=1.4 Score=34.95 Aligned_cols=41 Identities=37% Similarity=0.485 Sum_probs=36.7
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc
Q 001148 990 SQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR 1035 (1139)
Q Consensus 990 s~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak 1035 (1139)
++..+..++++|++..+..++. -++.+|.+.++..|.||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~-----~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK-----SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT-----SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHc-----CCCHHHHHHHHHHHHHHhC
Confidence 4667888999999999999887 6899999999999999984
No 44
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=86.03 E-value=0.61 Score=48.71 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=61.9
Q ss_pred cccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHH-HHHHHHcCCcccCCCCCccccccccCCCc
Q 001148 422 FRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIA-LQYLRQAGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 422 ~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~A-L~~lk~~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
+.+.|+..||.||+.++.++...-+...-.+.+ .|+.+-..|+.|=+.- -.+++..|+++.. -..++|+.|.+
T Consensus 12 ~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y-~~~~s~~~Kl~NW~~Ln~kvl~kl~~~l~~-----~~i~~i~~~~~ 85 (158)
T PF06294_consen 12 RPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNY-SNGNSVAQKLNNWETLNEKVLKKLGIKLDK-----EDIEGIINCKP 85 (158)
T ss_dssp --SS-HHHHHTTSHHHHHHHHHH-TTT---SS-----SSHHHHHHHHHHHHHHTTGGGT----H-----HHHHHHHTT-T
T ss_pred CCCCchHHHcccccHHHHHHHHHCCCCcccccc-CCCCCHHHHHHHHHHHHHHHHHHcCCCCCH-----HHHHHHHhCCC
Confidence 467899999999999999998887763223333 5677888999999888 8999999998765 35678999999
Q ss_pred cchhHHHHHHHHHhh
Q 001148 501 ELILSLLWNMFVHLQ 515 (1139)
Q Consensus 501 k~tLgLLW~li~~fq 515 (1139)
..+-.||..|+..++
T Consensus 86 Gaae~lL~~L~~~l~ 100 (158)
T PF06294_consen 86 GAAESLLYQLYTKLT 100 (158)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988773
No 45
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.83 E-value=14 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHhhHHHHHHH
Q 001148 888 LKTKSAIIIQSHIRGWTARRRA 909 (1139)
Q Consensus 888 ~~~~AAi~IQs~~Rg~laRr~~ 909 (1139)
+++.||+.||++||||++|+++
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666543
No 46
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=82.72 E-value=1.3 Score=53.67 Aligned_cols=72 Identities=24% Similarity=0.232 Sum_probs=56.6
Q ss_pred ccchhHHHhhhHHHHHHHHHHhcCCCcccccccc-CCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccC
Q 001148 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVV-PSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVAN 497 (1139)
Q Consensus 423 ~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~-p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVd 497 (1139)
.|-+|+.-|||||.||+|+..|.+.+...++++. |.-+.+-++.|++.-|.+..+ .+.|.+.+ -..|.|+.|
T Consensus 29 ~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~-~Fglr~se--LF~afDLfd 101 (865)
T KOG2996|consen 29 QVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCE-KFGLRDSE--LFEAFDLFD 101 (865)
T ss_pred hHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHH-HhCCchhh--hcchhhhhh
Confidence 5789999999999999999999998777777765 555789999999999999886 34444422 246677655
No 47
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.45 E-value=59 Score=38.03 Aligned_cols=125 Identities=22% Similarity=0.390 Sum_probs=84.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHH
Q 001148 945 ISATNMDEEMRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLK 1024 (1139)
Q Consensus 945 ~~~~~v~ee~kl~~Rl~~AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~ 1024 (1139)
..++.+-.|. .-.-+.+|+...+-...++...-+++.|-+-- .-|..++++|.+++++..|..||--- -.++.+
T Consensus 232 ~hAr~ia~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~----E~C~~I~e~GGl~tl~~~i~d~n~~~-~r~l~k 305 (461)
T KOG4199|consen 232 GHARTIAKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRD----EICKSIAESGGLDTLLRCIDDSNEQG-NRTLAK 305 (461)
T ss_pred HHHHHHHHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHH----HHHHHHHHccCHHHHHHHHhhhchhh-HHHHHH
Confidence 4445555554 33344556555555556666666666664433 56899999999999999999988531 226899
Q ss_pred HHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhccCccch--HHHHHHHhh
Q 001148 1025 HALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFI--AAEILNKIC 1076 (1139)
Q Consensus 1025 ~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k~~~~f~--a~~ll~~l~ 1076 (1139)
.+++.|..||--....+.+... +-.+.|+.-++|+-++.--+ +|.++..||
T Consensus 306 ~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 306 TCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPLVIQEVMAIISILC 358 (461)
T ss_pred HHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999999888887653 33445545566765544333 666666666
No 48
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.32 E-value=13 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHHh
Q 001148 889 KTKSAIIIQSHIRGWTARRRAY 910 (1139)
Q Consensus 889 ~~~AAi~IQs~~Rg~laRr~~~ 910 (1139)
+.++|+++|++||||.+|++++
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHH
Confidence 4566777777777777776644
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=79.38 E-value=1.7 Score=53.28 Aligned_cols=69 Identities=28% Similarity=0.242 Sum_probs=54.2
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCC-----CchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSD-----THRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~-----~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
.||...|-|||+||.|++-+.+.+.. .+++|.. +-...--||+-=|++..+.||+-.+ -+++.||+.+.
T Consensus 595 ~Dl~aALtDGViLChLaN~lRPRSV~--SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~----lCS~~Dilq~~ 668 (722)
T KOG0532|consen 595 EDLAAALTDGVILCHLANHLRPRSVA--SIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPEAD----LCSPMDILQKI 668 (722)
T ss_pred hhHHHHhhcchhhHhhhcccCCCCcc--ceecCCCccchhHHHHHHHhHHHHHHHHHHcCCChHh----hcCHHHhhhhh
Confidence 48899999999999999999986432 3344432 3457788999999999999998655 27899998874
No 50
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=77.07 E-value=5.3 Score=30.86 Aligned_cols=39 Identities=33% Similarity=0.460 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc
Q 001148 992 NCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR 1035 (1139)
Q Consensus 992 ~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak 1035 (1139)
..++.+.+.|++..+..++. -++.++.+.++..|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~-----~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLK-----SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHHHcC
Confidence 35678889999999999876 4589999999999999974
No 51
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=76.77 E-value=1.9 Score=55.46 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHccC-CceecCCCCCCchhhHHHHHHhhcc
Q 001148 547 LLDLLLNWIQVICEKY-DFRINNFSSLTDGKAIWCLLDFYFR 587 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~y-gv~V~NFtS~~DGraf~aLI~~~~p 587 (1139)
....||.||++++..| +++++|+++|..|.+||+|+|.|.|
T Consensus 422 ~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~ 463 (890)
T KOG0035|consen 422 YGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNE 463 (890)
T ss_pred hHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhh
Confidence 4567899999999999 8999999999999999999999944
No 52
>PF05536 Neurochondrin: Neurochondrin
Probab=73.76 E-value=32 Score=43.01 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Q 001148 954 MRIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNL 1033 (1139)
Q Consensus 954 ~kl~~Rl~~AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nl 1033 (1139)
.++..|+-.-++.+.+.-..+.+=+++..|-.+. -+|...+.+.+.|++..+...+.+ +....+.++.+|.|+
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~------~~~~~E~Al~lL~~L 166 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN------QSFQMEIALNLLLNL 166 (543)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh------CcchHHHHHHHHHHH
Confidence 4466666555555555555566666777777777 889999999999999999999987 445567777777775
Q ss_pred hcCcchhhhhhcccchHHHHHH----HHHhhccCccchHHHHHHHhhCCCch-hhHHhhChHHHHHHH-HHHHHHhhhhH
Q 001148 1034 ARYPHLIDVLIDSQGSVQTIMW----ELVRNKEEGYFIAAEILNKICSTHKG-VEAISKLPAHLKRLN-SLVDELTRKQS 1107 (1139)
Q Consensus 1034 aky~~~~~~v~~~~~~v~t~~~----~ll~~k~~~~f~a~~ll~~l~~~~~~-~~~v~~~p~~~~rl~-sl~~l~~rk~~ 1107 (1139)
.--.. .+..-+....+..++. ++-..++..-|..|.+|..+....+. .......|++.+-|+ .|+.++..|..
T Consensus 167 ls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~ 245 (543)
T PF05536_consen 167 LSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLT 245 (543)
T ss_pred HHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCC
Confidence 43211 1111111122222212 22224556678899999999987742 233446677888877 78889999988
Q ss_pred HHHhhc
Q 001148 1108 LEKRNA 1113 (1139)
Q Consensus 1108 ~~kr~~ 1113 (1139)
-+.|++
T Consensus 246 ~~~R~~ 251 (543)
T PF05536_consen 246 PSQRDP 251 (543)
T ss_pred HHHHHH
Confidence 887764
No 53
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=72.89 E-value=60 Score=41.90 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccc
Q 001148 969 SMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQG 1048 (1139)
Q Consensus 969 ~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~ 1048 (1139)
...+..-.+-++.-|...+-. +.+...|+++|++..|..++.+ ++.++++-++.+|.||+--+...+.+.+ .+
T Consensus 300 dr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s-----~~~~l~~~aLrlL~NLSfd~~~R~~mV~-~G 372 (708)
T PF05804_consen 300 DRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS-----ENEDLVNVALRLLFNLSFDPELRSQMVS-LG 372 (708)
T ss_pred cCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHhCcCHHHHHHHHH-CC
Confidence 344444333333334333322 3567899999999999999964 5689999999999999999999887764 56
Q ss_pred hHHHHHHHHHhhccCccchHHHHHHHhhCCCchhhHHhhChHHHHHHHHHHHHHhh
Q 001148 1049 SVQTIMWELVRNKEEGYFIAAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTR 1104 (1139)
Q Consensus 1049 ~v~t~~~~ll~~k~~~~f~a~~ll~~l~~~~~~~~~v~~~p~~~~rl~sl~~l~~r 1104 (1139)
+|..+ .+||.+ +....++..+|..||.+.+. +.+..... .+..|++.+..
T Consensus 373 lIPkL-v~LL~d-~~~~~val~iLy~LS~dd~~-r~~f~~Td---cIp~L~~~Ll~ 422 (708)
T PF05804_consen 373 LIPKL-VELLKD-PNFREVALKILYNLSMDDEA-RSMFAYTD---CIPQLMQMLLE 422 (708)
T ss_pred CcHHH-HHHhCC-CchHHHHHHHHHHhccCHhh-HHHHhhcc---hHHHHHHHHHh
Confidence 67666 677763 22234577999999987663 32333333 34455555443
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.73 E-value=37 Score=42.08 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=77.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhh
Q 001148 962 SALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLID 1041 (1139)
Q Consensus 962 ~AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~ 1041 (1139)
..+...+...+-.--.-+|+.+..+.+.+..+++.+++.+....|...+ .-|+.+|-+.|+.+|.+|++++.-.+
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-----~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-----RDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-----cCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 3344444444433334455566666677777788888888766666544 56899999999999999999999888
Q ss_pred hhhcccchHHHHHHHHHhhccCccch-HHHHHHHhhCCCchhh
Q 001148 1042 VLIDSQGSVQTIMWELVRNKEEGYFI-AAEILNKICSTHKGVE 1083 (1139)
Q Consensus 1042 ~v~~~~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~~~~ 1083 (1139)
.+++... +..| ..++...++.+.. ..+++..+++....+-
T Consensus 155 ~l~~~~~-~~~L-~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 155 QLFDSNL-LSKL-KSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred HHhCcch-HHHH-HHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 8886554 5554 6666653444443 6677777776554443
No 55
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=72.28 E-value=18 Score=51.28 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=75.6
Q ss_pred HHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcch-hhhhhcccchHHHHHHH
Q 001148 978 HVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHL-IDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 978 ~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~-~~~v~~~~~~v~t~~~~ 1056 (1139)
+++..|..++......++.+++.|++..+..++.+ ++.++-+.++..|.||++...- ..++.+ .+.|..| .+
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-----~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~L-V~ 495 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-----SSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPL-VQ 495 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHH-HH
Confidence 34445556666777788999999999999998876 4578889999999999997754 545554 6788776 88
Q ss_pred HHhhccCccch-HHHHHHHhhCCCchhhH
Q 001148 1057 LVRNKEEGYFI-AAEILNKICSTHKGVEA 1084 (1139)
Q Consensus 1057 ll~~k~~~~f~-a~~ll~~l~~~~~~~~~ 1084 (1139)
||+..+..+.. ||..|..||.+++....
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 99866655555 88899988876544433
No 56
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=72.13 E-value=7.5 Score=48.65 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=25.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001148 730 LPGNAAKVIKFHFRGWIERRNFLKMRNAA 758 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr~y~~~R~a~ 758 (1139)
+....|.+||++||.|++|++|.++|...
T Consensus 694 ~~d~~A~~IQkAWRrfv~rrky~k~ree~ 722 (1106)
T KOG0162|consen 694 KWDGMARRIQKAWRRFVARRKYEKMREEA 722 (1106)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999963
No 57
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=69.12 E-value=6.2 Score=40.48 Aligned_cols=53 Identities=28% Similarity=0.208 Sum_probs=40.8
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCc
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVK 481 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~ 481 (1139)
.||..-|+||++|||++.-.++.. -++ ..+++.+..++|+..-+++++..+++
T Consensus 34 gdll~~lkdGv~lCril~ea~~~~---I~y-KeSkmpFVQmenIs~Fin~~~k~~vp 86 (178)
T COG5199 34 GDLLSLLKDGVRLCRILNEASPLD---IKY-KESKMPFVQMENISSFINGLKKLRVP 86 (178)
T ss_pred ccHHHHHhcchHHHHHHhhcCccc---cee-cccCCceeeHHHHHHHHHHHHHhCCC
Confidence 578889999999999886665542 121 34567788999999999999987754
No 58
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=68.45 E-value=7.3 Score=53.56 Aligned_cols=6 Identities=50% Similarity=0.396 Sum_probs=2.8
Q ss_pred HHHHhh
Q 001148 83 AAARRL 88 (1139)
Q Consensus 83 ~~~~~~ 88 (1139)
++|+.+
T Consensus 1739 ~aA~~l 1744 (2039)
T PRK15319 1739 WMARNL 1744 (2039)
T ss_pred HHHHhh
Confidence 345544
No 59
>PRK09752 adhesin; Provisional
Probab=64.95 E-value=5.8 Score=52.48 Aligned_cols=6 Identities=33% Similarity=0.268 Sum_probs=2.6
Q ss_pred HHHHhh
Q 001148 83 AAARRL 88 (1139)
Q Consensus 83 ~~~~~~ 88 (1139)
+++..|
T Consensus 966 ~AANtl 971 (1250)
T PRK09752 966 RAANQA 971 (1250)
T ss_pred HHHhhh
Confidence 444444
No 60
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=62.28 E-value=34 Score=44.09 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=76.0
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHH
Q 001148 976 ILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMW 1055 (1139)
Q Consensus 976 IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~ 1055 (1139)
+||+.--+-++. ..+.|..-++++|.+..+..++++. -.|.|.+-+.+-++..+..++.|.+.+....+.+..+ .
T Consensus 552 ~LE~Vi~~gtla-~d~~~A~lL~~sgli~~Li~LL~~k---qeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~yl-i 626 (708)
T PF05804_consen 552 LLEVVILLGTLA-SDPECAPLLAKSGLIPTLIELLNAK---QEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYL-I 626 (708)
T ss_pred HHHHHHHHHHHH-CCHHHHHHHHhCChHHHHHHHHHhh---CchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHH-H
Confidence 345444444333 4678888899999999999988655 4599999999999999999999999998777777665 9
Q ss_pred HHHhhccCccchHH-HHHHHhhCC
Q 001148 1056 ELVRNKEEGYFIAA-EILNKICST 1078 (1139)
Q Consensus 1056 ~ll~~k~~~~f~a~-~ll~~l~~~ 1078 (1139)
+|+++|+..+=..| ..|-.+++.
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999998777655 555555553
No 61
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=60.89 E-value=26 Score=36.73 Aligned_cols=83 Identities=19% Similarity=0.349 Sum_probs=60.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhccCccchHH
Q 001148 994 CEKLVAAGAVDTLLKLIGSVSRS----MPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFIAA 1069 (1139)
Q Consensus 994 Ce~l~~sgAv~~i~~lir~~NRS----vp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k~~~~f~a~ 1069 (1139)
++.-++.|++..|+..+..++.. ..+.++...++.-|..|........+|++.+++|.+|+.-|.-..-...-.++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 44555678888888777666654 46679999999999999999999999999999999985444432212222367
Q ss_pred HHHHHhh
Q 001148 1070 EILNKIC 1076 (1139)
Q Consensus 1070 ~ll~~l~ 1076 (1139)
+||..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888887
No 62
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=60.86 E-value=4 Score=42.76 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCCceecCCC-CCCchhhHHHHHHhhcc
Q 001148 551 LLNWIQVICEKYDFRINNFS-SLTDGKAIWCLLDFYFR 587 (1139)
Q Consensus 551 LL~W~q~v~~~ygv~V~NFt-S~~DGraf~aLI~~~~p 587 (1139)
|++|++.+ .-.+.+.|+. +|+||..+.-|+++|.|
T Consensus 1 l~~WL~~l--~ls~~~~n~~rDfsdG~lvAEIl~~y~p 36 (158)
T PF06294_consen 1 LLKWLQSL--DLSRPPKNIRRDFSDGYLVAEILSRYYP 36 (158)
T ss_dssp HHHHHHHS----S--SS-HHHHHTTSHHHHHHHHHH-T
T ss_pred ChHHHhcC--CCCCCCCchHHHcccccHHHHHHHHHCC
Confidence 67999972 1245778887 99999999999999933
No 63
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.06 E-value=9.1 Score=49.19 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=17.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001148 768 TPDLLSGATDEQKYLHSYAEIDKASIM 794 (1139)
Q Consensus 768 ~~~~~~AAi~IQa~~Rg~laRr~~~~l 794 (1139)
.++++++|+++|++||||.+|++....
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777776654443
No 64
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=58.57 E-value=11 Score=47.39 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001148 802 DVGIKAALKIQSSWRNFIASRSLQKNYFAATMI 834 (1139)
Q Consensus 802 ~~~~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~I 834 (1139)
+....-|..||++||.|.+|+.|.+++.-+..+
T Consensus 693 r~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 693 RKWDGMARRIQKAWRRFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668899999999999999999888755443
No 65
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=57.52 E-value=94 Score=44.62 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchh
Q 001148 961 VSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLI 1040 (1139)
Q Consensus 961 ~~AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~ 1040 (1139)
...|..|+...+-..--+|+..|..++..++..|+.++..|++.-+..++++ .+.++-+.+...|.||+.-.+-.
T Consensus 611 L~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss-----~~~~v~keAA~AL~nL~~~~~~~ 685 (2102)
T PLN03200 611 LRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN-----NTEAVATQSARALAALSRSIKEN 685 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc-----CChHHHHHHHHHHHHHHhCCCHH
Confidence 3455566666666666778888888888999989999999999999998875 57789999999999999744433
Q ss_pred hhh-hcccchHHHHHHHHHhhccCccc-hHHHHHHHhhCCCchhhHHhhC
Q 001148 1041 DVL-IDSQGSVQTIMWELVRNKEEGYF-IAAEILNKICSTHKGVEAISKL 1088 (1139)
Q Consensus 1041 ~~v-~~~~~~v~t~~~~ll~~k~~~~f-~a~~ll~~l~~~~~~~~~v~~~ 1088 (1139)
..+ +-..++|..| .+||...+..+- .|...|..|+++++...++...
T Consensus 686 q~~~~v~~GaV~pL-~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~ 734 (2102)
T PLN03200 686 RKVSYAAEDAIKPL-IKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAE 734 (2102)
T ss_pred HHHHHHHcCCHHHH-HHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhc
Confidence 333 2347888886 899987765555 4778999999999888776643
No 66
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=52.75 E-value=1.5e+02 Score=38.50 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=46.2
Q ss_pred HHHhhhHHHHHHHHHHhcCCCccccccccCCCC-chhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 428 FVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDT-HRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 428 ~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~-R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
...||.||.|+.|.+...++. ..+ -+|+.. -+..-.|+|.=|+++..-|++-. ....-.||.+|.
T Consensus 67 e~slRnGV~La~l~q~f~pd~--~~~-iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~----FhFEl~DlYekK 132 (1054)
T COG5261 67 EDSLRNGVFLAKLTQRFNPDL--TTV-IFPADKLQFRHTDNINAFLDLIEHVGLPES----FHFELQDLYEKK 132 (1054)
T ss_pred HHHHhccchHHHHHHHhCCCc--eeE-eeecccceeeccccHHHHHhHhhhcCCcce----eeeehHhhhccC
Confidence 578999999999999999883 233 356632 45678899999999997776421 123445776653
No 67
>PHA03247 large tegument protein UL36; Provisional
Probab=51.94 E-value=24 Score=50.31 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=15.5
Q ss_pred hhHHHHH-HHHHHHHHHHh--cCCCCCCCCC
Q 001148 108 QSLKSLS-KSLTVWLNFLL--ENPKSCGCDK 135 (1139)
Q Consensus 108 ~~~~~~~-~~~~~~~n~~~--~~~~~~~~~~ 135 (1139)
..+++.. .-.+.|-..|. .++....|++
T Consensus 2994 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~sl 3024 (3151)
T PHA03247 2994 PPLTGHSLSRVSSWASSLALHEETDPPPVSL 3024 (3151)
T ss_pred CCCCCCCCCCcchhhhhccccccCCCCCCCc
Confidence 3344442 34677877776 5555555555
No 68
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=48.98 E-value=2.8e+02 Score=35.70 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=23.2
Q ss_pred cchhHhhHHHHhhhHHHHHHHHHHHHHH
Q 001148 913 KHHIVLIQSYWRGCLARKASSCQLLDLR 940 (1139)
Q Consensus 913 ~~Aai~IQa~wRg~~aRK~~~~kl~~lR 940 (1139)
..+++++|++.|||++|+++..++.-+|
T Consensus 813 ae~v~k~Q~~~Rg~L~rkr~~~ri~~~~ 840 (1259)
T KOG0163|consen 813 AECVLKAQRIARGYLARKRHRPRIAGIR 840 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHH
Confidence 3567889999999999999988777655
No 69
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.08 E-value=81 Score=39.09 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=81.6
Q ss_pred HHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHH
Q 001148 979 VCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELV 1058 (1139)
Q Consensus 979 al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll 1058 (1139)
|.=.|.-+...||.|=..+...|++..++.+|..-+. -..++.+.-+|-||.+...=.+..-.+..++.+| ..|+
T Consensus 172 avWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~----~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L-~~ll 246 (514)
T KOG0166|consen 172 AVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK----LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL-LRLL 246 (514)
T ss_pred HHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc----hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH-HHHH
Confidence 3347788899999999999999999999997764333 5788899999999999988444444456666776 6777
Q ss_pred hhccCccch-HHHHHHHhhC-CCchhhHHhhChHHHHHHHH
Q 001148 1059 RNKEEGYFI-AAEILNKICS-THKGVEAISKLPAHLKRLNS 1097 (1139)
Q Consensus 1059 ~~k~~~~f~-a~~ll~~l~~-~~~~~~~v~~~p~~~~rl~s 1097 (1139)
+..|..+-+ ||-.|.-|.. ..+..++| -...++.||..
T Consensus 247 ~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v-i~~gvv~~LV~ 286 (514)
T KOG0166|consen 247 HSTDEEVLTDACWALSYLTDGSNEKIQMV-IDAGVVPRLVD 286 (514)
T ss_pred hcCCHHHHHHHHHHHHHHhcCChHHHHHH-HHccchHHHHH
Confidence 788877777 9988888874 44444433 33445555443
No 70
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=46.37 E-value=9.2 Score=31.91 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 001148 333 VILKRVLLLVLILDR 347 (1139)
Q Consensus 333 ~~L~r~l~lv~~LD~ 347 (1139)
+||||+|+|+|||=-
T Consensus 1 ftlKKsllLlfflG~ 15 (46)
T PF03032_consen 1 FTLKKSLLLLFFLGT 15 (46)
T ss_pred CcchHHHHHHHHHHH
Confidence 579999999999843
No 71
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=45.40 E-value=1.1e+02 Score=35.30 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHh----hccCc----cchHHHH
Q 001148 1000 AGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVR----NKEEG----YFIAAEI 1071 (1139)
Q Consensus 1000 sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~----~k~~~----~f~a~~l 1071 (1139)
.+++..++..+.+.. +.++-++...+++.|-+|.+-+......++ .+.|..+ .++++ +.+.. -+-++..
T Consensus 145 ~~~l~~ll~~L~~~l-~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l-~~iL~~~~~~~~~~~~Ql~Y~~ll~ 221 (312)
T PF03224_consen 145 KEALPKLLQWLSSQL-SSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPL-FDILRKQATNSNSSGIQLQYQALLC 221 (312)
T ss_dssp HHHHHHHHHHHH-TT--HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHH-HHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHH-HHHHHhhcccCCCCchhHHHHHHHH
Confidence 467788888888733 446777889999999999999999999888 7788777 56773 22222 2338899
Q ss_pred HHHhhCCCchhhHHhhChHHHHHHHHHHHHHh
Q 001148 1072 LNKICSTHKGVEAISKLPAHLKRLNSLVDELT 1103 (1139)
Q Consensus 1072 l~~l~~~~~~~~~v~~~p~~~~rl~sl~~l~~ 1103 (1139)
+|.|+-+++.++.+.... ++..|..+.+...
T Consensus 222 lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~ 252 (312)
T PF03224_consen 222 LWLLSFEPEIAEELNKKY-LIPLLADILKDSI 252 (312)
T ss_dssp HHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--
T ss_pred HHHHhcCHHHHHHHhccc-hHHHHHHHHHhcc
Confidence 999999999998877666 8888888877665
No 72
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=44.58 E-value=1.1e+02 Score=35.78 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=80.4
Q ss_pred hhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhc
Q 001148 982 TLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNK 1061 (1139)
Q Consensus 982 ~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k 1061 (1139)
.|-.+..-|+.|=..+.+-||.+.++.++. -|.+|..+++.+-=+|-||.+=.+--+.--..-.++.+| -.|+--.
T Consensus 180 ALGNiAGDS~~~RD~vL~~galeplL~ll~---ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL-~KLiys~ 255 (526)
T COG5064 180 ALGNIAGDSEGCRDYVLQCGALEPLLGLLL---SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPIL-AKLIYSR 255 (526)
T ss_pred HhccccCCchhHHHHHHhcCchHHHHHHHH---hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHH-HHHHhhc
Confidence 667778899999999999999999999776 678899999999999999998777666544445666676 4555555
Q ss_pred cCccch-HHHHHHHhhCCCchhhHHhhChHHHHHHHHHHHHHhh
Q 001148 1062 EEGYFI-AAEILNKICSTHKGVEAISKLPAHLKRLNSLVDELTR 1104 (1139)
Q Consensus 1062 ~~~~f~-a~~ll~~l~~~~~~~~~v~~~p~~~~rl~sl~~l~~r 1104 (1139)
|..+.+ ||--+.-|..-+...-.+--+.....| |+++|+.
T Consensus 256 D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~R---LvElLs~ 296 (526)
T COG5064 256 DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGR---LVELLSH 296 (526)
T ss_pred CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHH---HHHHhcC
Confidence 555555 886666665544322222222333344 5666655
No 73
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=43.51 E-value=71 Score=44.53 Aligned_cols=104 Identities=15% Similarity=0.293 Sum_probs=72.6
Q ss_pred ccccHHHHHHHHhccccccCCCChhHHhhhccceeecccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccc
Q 001148 376 NVKSSRQVIVDFLSSEVMHGEGNLFAHLMIVGYKVSYQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIV 455 (1139)
Q Consensus 376 ~~KsS~~~l~~~~~~~~l~g~gd~~r~L~~lg~~~~~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~ 455 (1139)
+-||.+|.|+-+|+ .+.-||+ +..|+|..+..+||+-.-.|+-.=.++-....++
T Consensus 164 E~rSAKDALLLWCQ-------------mKTAGYp-----------nVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L- 218 (2473)
T KOG0517|consen 164 ETRSAKDALLLWCQ-------------MKTAGYP-----------NVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKL- 218 (2473)
T ss_pred hhhhHHHHHHHHHH-------------hhccCCC-----------CcccccCccchhcchhHHHHHHhcCcchhhhccc-
Confidence 78999999999997 4566774 4579999999999999988887666552212233
Q ss_pred cCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCCC--ccchhHHHHHHHHHh
Q 001148 456 VPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANGD--KELILSLLWNMFVHL 514 (1139)
Q Consensus 456 ~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG~--~k~tLgLLW~li~~f 514 (1139)
..-..++|.+.|++..++ -||.-. ..||||---+ .|.|+.-+=+...+|
T Consensus 219 ----~k~na~~NL~~AFdvAE~~LGia~L------LDpEDV~v~~PDEKSIITYV~~YYHyF 270 (2473)
T KOG0517|consen 219 ----KKSNALYNLQHAFDVAEQELGIAKL------LDPEDVNVEQPDEKSIITYVVTYYHYF 270 (2473)
T ss_pred ----CCCchhhHHHHHHHHHHHHcCchhc------CCHhhcCccCCCcchHHHHHHHHHHHH
Confidence 233568999999999875 566321 4688884443 456766665544444
No 74
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=41.86 E-value=37 Score=40.68 Aligned_cols=23 Identities=13% Similarity=0.424 Sum_probs=19.5
Q ss_pred hhHHhHHHHHHHHHHHhHHHHHH
Q 001148 676 TEDAVRKFKSLQAWWQKMAEQNN 698 (1139)
Q Consensus 676 ~e~~aRaA~~IQawwR~~~aRk~ 698 (1139)
.+.+.++|..||.|||.+.+|..
T Consensus 13 s~raikaAilIQkWYRr~~ARle 35 (631)
T KOG0377|consen 13 STRAIKAAILIQKWYRRYEARLE 35 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999975
No 75
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=40.79 E-value=4.6e+02 Score=32.62 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=74.1
Q ss_pred HHHHHHHhhhHHhhhc--cHHHHHHHHhhhhHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHHhcC-cchhhhhhcccch
Q 001148 974 CGILHVCTTLDMATEN--SQNCCEKLVAAGAVDTLLKLIGSVSRSM-PDQEVLKHALSTLRNLARY-PHLIDVLIDSQGS 1049 (1139)
Q Consensus 974 s~IL~al~~Le~~Trl--s~~cCe~l~~sgAv~~i~~lir~~NRSv-p~~eVl~~al~vL~nlaky-~~~~~~v~~~~~~ 1049 (1139)
.++|-.+..+|.++.+ ++...+.|++.|.+++|..+|....-.. ..--+|-..+.-..|++.+ |.-....| +..
T Consensus 214 dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~--p~~ 291 (503)
T PF10508_consen 214 DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY--PAF 291 (503)
T ss_pred ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH--HHH
Confidence 6666666666666655 8999999999999999999998776665 2333334455777788874 22222222 444
Q ss_pred HHHHHHHHHhhccCccch-HHHHHHHhhCCCchhhHH-hhChH
Q 001148 1050 VQTIMWELVRNKEEGYFI-AAEILNKICSTHKGVEAI-SKLPA 1090 (1139)
Q Consensus 1050 v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~~~~~v-~~~p~ 1090 (1139)
++.++ +++...|...-. |=+-|..+|.+.+|...+ .+.+.
T Consensus 292 ~~~l~-~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~ 333 (503)
T PF10508_consen 292 LERLF-SMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP 333 (503)
T ss_pred HHHHH-HHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 45542 444444444443 557888889888888877 44443
No 76
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.34 E-value=1e+03 Score=31.67 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhh---hhHHHHH
Q 001148 932 SSCQLLDLRLRIQISATNMDEEMR-IINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAA---GAVDTLL 1007 (1139)
Q Consensus 932 ~~~kl~~lR~Rlq~~~~~v~ee~k-l~~Rl~~AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~s---gAv~~i~ 1007 (1139)
+++++++.-.++.++.+++.+-+. .+.....-++..++++++...+.-++.+..+-.--+.|-.-+.+. ||++.|-
T Consensus 280 Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~ 359 (951)
T KOG2115|consen 280 LQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIK 359 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence 333333333334444444443333 334444556666777888888887777777766666654433332 3333222
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHH-HHHHh
Q 001148 1008 KLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIM-WELVR 1059 (1139)
Q Consensus 1008 ~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~-~~ll~ 1059 (1139)
. -++||+- +.|+-|-=|.++.+.+.+-+..|+..+ .|+.+
T Consensus 360 t----------~q~~L~g--~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~ 400 (951)
T KOG2115|consen 360 T----------IQELLKG--SELLGLHSFRHLRSQLLELYKTIDKMLTREFST 400 (951)
T ss_pred H----------HHHHHhh--hhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1333332 345556666777766655455554433 46655
No 77
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=37.90 E-value=23 Score=38.18 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHHccCCce-ecCCC-CCCchhhHHHHHHhhcc
Q 001148 546 ALLDLLLNWIQVICEKYDFR-INNFS-SLTDGKAIWCLLDFYFR 587 (1139)
Q Consensus 546 ~~~~~LL~W~q~v~~~ygv~-V~NFt-S~~DGraf~aLI~~~~p 587 (1139)
.....|+.|+..+... +.+ =.||. -+.||.+||-|+|.+.|
T Consensus 25 ~~~~el~~WI~~~~~~-~~~~~~~f~~~LKDG~iLCkl~N~l~p 67 (193)
T KOG2046|consen 25 ELEKELREWIENVVLT-ELPARGDFQDLLKDGVILCKLINKLYP 67 (193)
T ss_pred HHHHHHHHHHHHhhcc-CCCcccCHHHHHcchHHHHHHHHHhCc
Confidence 4457799999986221 222 46887 78999999999999966
No 78
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.84 E-value=1.6e+03 Score=32.97 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHhhHHHHH
Q 001148 807 AALKIQSSWRNFIASRSLQKNY---FAATMIQSHFRSSSHHR 845 (1139)
Q Consensus 807 AAi~IQ~~~Rg~laRr~y~r~r---~AAi~IQs~~Rg~laRr 845 (1139)
-.+.+|+.+|||++|+.|.+.. .|+.+||+..|.|+..+
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566666666655554332 35555666555554433
No 79
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=36.61 E-value=45 Score=39.99 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001148 731 PGNAAKVIKFHFRGWIERRN 750 (1139)
Q Consensus 731 ~~~AAi~IQs~~Rg~laRr~ 750 (1139)
--+||+.||.+||+|.+|..
T Consensus 16 aikaAilIQkWYRr~~ARle 35 (631)
T KOG0377|consen 16 AIKAAILIQKWYRRYEARLE 35 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888877754
No 80
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.60 E-value=59 Score=42.51 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=9.6
Q ss_pred CCCCCCCccCCCCCCCCCC
Q 001148 59 PKNLSSLYRRGLSSARSKS 77 (1139)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~ 77 (1139)
|.|+++++-.+++++|++|
T Consensus 1053 p~p~~~~p~~~a~~~~~~p 1071 (1080)
T KOG0566|consen 1053 PPPAPPPPPVGAPLGPGPP 1071 (1080)
T ss_pred CCCCCCCCCCCCCCCCCCC
Confidence 4444444455555555554
No 81
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=32.57 E-value=3.5e+02 Score=35.51 Aligned_cols=112 Identities=14% Similarity=-0.003 Sum_probs=60.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH---HHHhh----hhhhHHHHHHHHHHHhhH
Q 001148 769 PDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNF---IASRS----LQKNYFAATMIQSHFRSS 841 (1139)
Q Consensus 769 ~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi~IQ~~~Rg~---laRr~----y~r~r~AAi~IQs~~Rg~ 841 (1139)
.+..+.+-.||..++| |++|..+... ..+-......||..+=-+ .++++ ........+..|...||+
T Consensus 346 eedtk~~erlqs~i~g---r~KY~~l~~r---Lslf~p~f~LlQ~~iPlfS~aic~grv~r~sid~llni~klq~L~nG~ 419 (1054)
T COG5261 346 EEDTKFAERLQSNING---RKKYFPLDRR---LSLFGPLFFLLQSSIPLFSIAICVGRVKRFSIDALLNIVKLQILGNGY 419 (1054)
T ss_pred hhcchHHHHHHHHHhC---ccccchHHhh---hhhcCCceehhhhccchhhhHHhhcchheecHHHHHHHHHHHHhhcce
Confidence 4456778889999988 5555443211 011122345666333222 12221 123455778889999998
Q ss_pred HHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHH
Q 001148 842 SHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTA 905 (1139)
Q Consensus 842 laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk~~~~AAi~IQs~~Rg~la 905 (1139)
..|+-+- +.+. ......++...|..+|. .-.+-...|+..||++.
T Consensus 420 ~iRkl~~-----l~~s--------~~~~hlsv~~~q~L~R~------evE~~sl~qsl~rG~l~ 464 (1054)
T COG5261 420 EIRKLYS-----LGKS--------NCEEHLSVSLFQMLLRT------EVEATSLVQSLLRGNLP 464 (1054)
T ss_pred eeeeeec-----cccc--------chhHHHHHHHHHHHHHH------HhhccHHHHHHHhccch
Confidence 8774321 1110 01244566677777772 12222377888888877
No 82
>PRK13042 superantigen-like protein; Reviewed
Probab=32.54 E-value=67 Score=36.65 Aligned_cols=6 Identities=17% Similarity=0.435 Sum_probs=3.1
Q ss_pred CCCCCc
Q 001148 44 QSPCPQ 49 (1139)
Q Consensus 44 ~~~~~~ 49 (1139)
.+|.|+
T Consensus 68 ~t~qpt 73 (291)
T PRK13042 68 EAPQQT 73 (291)
T ss_pred cCCCCC
Confidence 355555
No 83
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=31.59 E-value=1.9e+03 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHH
Q 001148 827 NYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTAR 906 (1139)
Q Consensus 827 ~r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk~~~~AAi~IQs~~Rg~laR 906 (1139)
.-.-.+.+|+.+|||++|+.+.. +..+..|+.+||+.+|.|...
T Consensus 772 ls~ii~~fQA~~Rg~l~r~~~~k------------------------------------r~~~~~ai~~iQ~N~r~~~~l 815 (1930)
T KOG0161|consen 772 LSQIITLFQAAIRGYLARKEFKK------------------------------------RLQQLDAIKVIQRNIRAYLKL 815 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHhh
Confidence 33456667888888888777621 123456777788888777655
Q ss_pred HH
Q 001148 907 RR 908 (1139)
Q Consensus 907 r~ 908 (1139)
+.
T Consensus 816 r~ 817 (1930)
T KOG0161|consen 816 RT 817 (1930)
T ss_pred cc
Confidence 54
No 84
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=31.18 E-value=5.5e+02 Score=29.59 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=60.8
Q ss_pred HHHhhhhHHHHHHHHH--hhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHh--hccCccchHHHH
Q 001148 996 KLVAAGAVDTLLKLIG--SVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVR--NKEEGYFIAAEI 1071 (1139)
Q Consensus 996 ~l~~sgAv~~i~~lir--~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~--~k~~~~f~a~~l 1071 (1139)
...++|.+..+..+++ ..+.+-...++.=+++-++|-|+-.+...+...+.. .|-.+ .++++ -|++.+=++..+
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L-~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLL-ADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHH-HHHHHH--SHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHH-HHHHHhcccchHHHHHHHH
Confidence 3566888888888774 335778899999999999999999999998886544 55554 78887 578777788888
Q ss_pred HHHhhCCCc
Q 001148 1072 LNKICSTHK 1080 (1139)
Q Consensus 1072 l~~l~~~~~ 1080 (1139)
|+.|++...
T Consensus 264 l~Nl~~~~~ 272 (312)
T PF03224_consen 264 LRNLLSKAP 272 (312)
T ss_dssp HHHTTSSSS
T ss_pred HHHHHhccH
Confidence 998887666
No 85
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=31.04 E-value=95 Score=32.59 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=46.4
Q ss_pred hhhhhHHHHhhhh---hhhHHHHHHHHHHHHHHHhcCCCCCCCCCccCCCCCccccCCccccC----------CcccccC
Q 001148 94 EQSKSAYKSQLKK---EQSLKSLSKSLTVWLNFLLENPKSCGCDKFDSGNVGAVAVGKGKREG----------GEVMTWR 160 (1139)
Q Consensus 94 ~~~~~~~~~~~~~---e~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 160 (1139)
|.-||+-|-|-+- -+||++| -+-..+++|+..|++ ....+..+...++...||+ -+...|+
T Consensus 88 ek~qStQKvqQYaVRLKRWM~aM--HVDAFFeYllg~~~~----Y~t~iP~~~~~~~~~~RDGV~~edDlalRAL~P~~k 161 (175)
T PF09441_consen 88 EKGQSTQKVQQYAVRLKRWMRAM--HVDAFFEYLLGKPHP----YYTQIPPDNPPVSEPGRDGVPLEDDLALRALLPQIK 161 (175)
T ss_pred ccccchHHHHHHHHHHHHHHHHh--hHHHHHHHHhCCCCc----ccccCCCCCCCccccccCCCchhHHHHHHHhccccC
Confidence 4567777777554 4799988 567899999999998 3333333233343455777 3344454
Q ss_pred ChhhhhhhcccCC
Q 001148 161 DPKRQRDACWRGD 173 (1139)
Q Consensus 161 ~~~~~r~~~~~~~ 173 (1139)
|||-|....+++
T Consensus 162 -PkRGRkr~~~~e 173 (175)
T PF09441_consen 162 -PKRGRKRAEDDE 173 (175)
T ss_pred -ccccCCCCcccc
Confidence 777777655443
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.04 E-value=5.6e+02 Score=33.55 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=59.3
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcch-------h----------hhhhcccchHHHHHHHHHhhccCc-cchH
Q 001148 1007 LKLIGSVSRSMPDQEVLKHALSTLRNLARYPHL-------I----------DVLIDSQGSVQTIMWELVRNKEEG-YFIA 1068 (1139)
Q Consensus 1007 ~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~-------~----------~~v~~~~~~v~t~~~~ll~~k~~~-~f~a 1068 (1139)
--+|..+-|---|.|.|++++.++++|...+.. + ++.+..+.-| |++++.+-++|=+ --.|
T Consensus 64 k~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I-~lll~~~e~~DF~VR~~a 142 (970)
T KOG0946|consen 64 KPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNI-TLLLQSLEEFDFHVRLYA 142 (970)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhH-HHHHHHHHhhchhhhhHH
Confidence 334556667788999999999999999988741 1 1122233333 3335555566622 2347
Q ss_pred HHHHHHhhCCCc--hhhHHhhChHHHHHHHHHH
Q 001148 1069 AEILNKICSTHK--GVEAISKLPAHLKRLNSLV 1099 (1139)
Q Consensus 1069 ~~ll~~l~~~~~--~~~~v~~~p~~~~rl~sl~ 1099 (1139)
-.||..|..... --+.+...|..|-+|-++.
T Consensus 143 IqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 788887765433 3477889999887766544
No 87
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=27.39 E-value=57 Score=40.29 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHH
Q 001148 873 VVKLQRWWKNVLLLKLKTKSAIIIQSHIRGWTARR 907 (1139)
Q Consensus 873 Ai~IQ~~~R~~l~rk~~~~AAi~IQs~~Rg~laRr 907 (1139)
|.++|..-|....-++++.||..||.+||-|.+-.
T Consensus 323 ALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 323 ALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhccc
Confidence 44555555555555567788888888888887654
No 88
>PF15449 Retinal: Retinal protein
Probab=27.27 E-value=1.3e+02 Score=40.11 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=5.8
Q ss_pred ccCCCCCCCCCCc
Q 001148 66 YRRGLSSARSKST 78 (1139)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (1139)
.|+-.+++++.++
T Consensus 1099 q~~Eas~pss~~s 1111 (1287)
T PF15449_consen 1099 QRREASPPSSGPS 1111 (1287)
T ss_pred CCCCCCCCCCCCC
Confidence 3443455444443
No 89
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=24.89 E-value=1.2e+02 Score=36.16 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=4.8
Q ss_pred CCCCCCCccCCC
Q 001148 59 PKNLSSLYRRGL 70 (1139)
Q Consensus 59 ~~~~~~~~~~~~ 70 (1139)
|.|.+...+|-|
T Consensus 522 ~lp~~~~~qr~P 533 (563)
T KOG1785|consen 522 PLPAPPNPQRDP 533 (563)
T ss_pred CCCCCCCcccCC
Confidence 444444444333
No 90
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=24.86 E-value=56 Score=39.70 Aligned_cols=8 Identities=63% Similarity=1.057 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 001148 6 PLPSTSPS 13 (1139)
Q Consensus 6 ~~~~~~~~ 13 (1139)
|+|+|.|+
T Consensus 5 p~P~P~P~ 12 (465)
T PF01690_consen 5 PPPSPGPS 12 (465)
T ss_pred CCCCCCCC
Confidence 44444443
No 91
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=24.59 E-value=4.3e+02 Score=32.28 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHH
Q 001148 992 NCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMW 1055 (1139)
Q Consensus 992 ~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~ 1055 (1139)
.-|..||+.|.++++...+-+-|---.+.++-+-+++-|+|+.- |..-++-+-.-+-+++|+.
T Consensus 347 ~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvteaIL~ 409 (604)
T KOG4500|consen 347 DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVTEAILL 409 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchHHHHHH
Confidence 34899999999999999999888888899999999999999974 4444444445566677743
No 92
>KOG2627 consensus Nuclear protein ES2 [General function prediction only]
Probab=24.56 E-value=27 Score=41.64 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCCC---------CCCCCcccccccCCCCCCCCCCccCCCCCCCCCCccchhH
Q 001148 30 NFKTPKRPSQPPNF---------QSPCPQKYFTASKNTPKNLSSLYRRGLSSARSKSTKTKTA 83 (1139)
Q Consensus 30 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1139)
-|+++..+..+|++ .||.-|+|||-+- .+.+++.+|..|++.|+....++||
T Consensus 383 al~~a~~~~~sp~~~s~s~~l~~lSPAAQkL~tk~l--~~~~sp~~rs~~as~p~~s~r~~tP 443 (488)
T KOG2627|consen 383 ALDSASTALNSPSTPSVSRKLANLSPAAQKLVTKKL--GKSSSPAHRSSPASSPGTSLRTSTP 443 (488)
T ss_pred HHhccccccCCCCccCcchhhcccCHHHHHHHHHHh--hcccCccccCCCCCCCCccccccCC
Confidence 36666666555555 2699999998665 5666777777777777766666666
No 93
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=22.32 E-value=1.5e+02 Score=39.94 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhc
Q 001148 1116 SAVRENLERRLREAAEILKLIKH 1138 (1139)
Q Consensus 1116 ~~~~~~~~~rl~~~~~~~~~~~~ 1138 (1139)
+-.+.-++||+.|--..|+.|-|
T Consensus 1445 snikaVA~kR~~~ln~yl~~L~n 1467 (1639)
T KOG0905|consen 1445 SNIKAVAEKRIIELNKYLISLFN 1467 (1639)
T ss_pred cchhHHHHHHHHHHHHHHHHHhc
Confidence 34445578888887666655543
No 94
>PF04621 ETS_PEA3_N: PEA3 subfamily ETS-domain transcription factor N terminal domain; InterPro: IPR006715 The N-terminal of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding []. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N-terminal region contains conserved MAP kinase phosphorylation sites [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.92 E-value=1.4e+02 Score=35.13 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=6.0
Q ss_pred ccccCChhhhhhhc
Q 001148 156 VMTWRDPKRQRDAC 169 (1139)
Q Consensus 156 ~~~~~~~~~~r~~~ 169 (1139)
+..|.|-....++.
T Consensus 279 VP~C~S~y~~~e~~ 292 (341)
T PF04621_consen 279 VPGCQSMYLRQEGF 292 (341)
T ss_pred CCcccccccccCCC
Confidence 34444444444433
No 95
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=21.50 E-value=1.3e+02 Score=41.22 Aligned_cols=31 Identities=19% Similarity=0.052 Sum_probs=18.4
Q ss_pred CCCCCCCCccCCCCCCCCCCccchhHHHHhh
Q 001148 58 TPKNLSSLYRRGLSSARSKSTKTKTAAARRL 88 (1139)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1139)
.|.|...+.++++..+.++.+.++.+++|.+
T Consensus 82 ~~~~~~e~r~~~~~~~r~s~~~~~~~as~~~ 112 (1509)
T KOG4645|consen 82 GTSPPIEPRQEKRMSARSSVNNVPAPASRSN 112 (1509)
T ss_pred cCCCCCCcchhchhhhcccccCCCccchhhh
Confidence 3455555555556666666666666666655
No 96
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=21.01 E-value=1.7e+02 Score=33.73 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCC
Q 001148 1 MDPPCPLPSTSP 12 (1139)
Q Consensus 1 ~~~~~~~~~~~~ 12 (1139)
|.|+-|||++++
T Consensus 1 ~~p~~~~~~~~~ 12 (353)
T PLN00034 1 MKPIQPPPGVPL 12 (353)
T ss_pred CCCCCCCCCCCC
Confidence 455554444433
No 97
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=20.48 E-value=91 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.604 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCCceec--CCCCC-CchhhHHHHHH
Q 001148 549 DLLLNWIQVICEKYDFRIN--NFSSL-TDGKAIWCLLD 583 (1139)
Q Consensus 549 ~~LL~W~q~v~~~ygv~V~--NFtS~-~DGraf~aLI~ 583 (1139)
+-.+.|++-+++.|+++.. |+..| -||+++|.+-.
T Consensus 8 ~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~ 45 (68)
T cd08757 8 NDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTE 45 (68)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCH
Confidence 4577899888887776654 33344 68999998643
No 98
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=20.41 E-value=1.7e+02 Score=34.81 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=11.2
Q ss_pred cccccccCCCCCCCC-CCCCCCC
Q 001148 23 VLLKDISNFKTPKRP-SQPPNFQ 44 (1139)
Q Consensus 23 ~~~~~~~~~~~~~~~-~~~~~~~ 44 (1139)
+..|-++|-.|..-+ |.+|+++
T Consensus 508 ~~~k~l~~v~~~g~~lp~~~~~q 530 (563)
T KOG1785|consen 508 VNIKELENVETSGKPLPAPPNPQ 530 (563)
T ss_pred cchhhhhcccccCCCCCCCCCcc
Confidence 455666666664333 3344444
Done!