Query 001148
Match_columns 1139
No_of_seqs 702 out of 2882
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 13:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b7l_A Filamin-B; structural p 100.0 8E-38 2.7E-42 357.5 11.2 217 412-671 25-246 (347)
2 3hoc_A Filamin-A; calponin hom 100.0 4E-37 1.4E-41 339.8 10.4 206 417-665 60-270 (272)
3 3f7p_A Plectin-1; plakin, hemi 100.0 9.3E-37 3.2E-41 340.1 10.0 209 412-668 81-294 (296)
4 1wku_A Alpha-actinin 3; calpon 100.0 2.7E-36 9.3E-41 331.4 7.4 208 412-670 35-248 (254)
5 2wa7_A Filamin-B; disease muta 100.0 6.8E-36 2.3E-40 326.7 10.1 211 412-665 28-243 (245)
6 1sh5_A Plectin 1, PLTN, PCN; a 100.0 3.6E-35 1.2E-39 321.0 9.4 202 419-668 32-238 (245)
7 1dxx_A Dystrophin; structural 100.0 2.9E-34 9.8E-39 314.1 10.2 202 423-669 36-242 (246)
8 1aoa_A T-fimbrin; actin-bindin 100.0 4.2E-32 1.4E-36 301.6 9.6 223 420-664 49-275 (275)
9 1sjj_A Actinin; 3-helix bundle 100.0 1.4E-31 4.7E-36 340.0 9.1 208 412-670 16-229 (863)
10 1pxy_A Fimbrin-like protein; c 100.0 3.9E-30 1.4E-34 308.3 6.7 207 421-666 291-503 (506)
11 1rt8_A Fimbrin; filamentous ac 100.0 1.2E-29 4.2E-34 304.4 10.0 219 421-669 38-265 (513)
12 1rt8_A Fimbrin; filamentous ac 100.0 2.4E-29 8.1E-34 302.0 8.1 203 421-664 300-512 (513)
13 1pxy_A Fimbrin-like protein; c 99.9 1.3E-27 4.5E-32 286.5 13.4 220 420-669 32-256 (506)
14 2vzc_A Alpha-parvin; membrane, 99.9 6.8E-23 2.3E-27 203.0 5.8 101 412-517 30-130 (131)
15 2dfs_A Myosin-5A; myosin-V, in 99.8 9E-21 3.1E-25 243.5 20.7 145 730-916 766-913 (1080)
16 2dfs_A Myosin-5A; myosin-V, in 99.8 3.8E-17 1.3E-21 210.1 30.4 141 679-848 767-907 (1080)
17 2yrn_A Neuron navigator 2 isof 99.7 3.6E-19 1.2E-23 176.1 4.6 88 423-517 39-126 (129)
18 1bkr_A Spectrin beta chain; fi 99.7 7.3E-19 2.5E-23 168.8 3.7 102 545-668 2-108 (109)
19 1bhd_A Utrophin; calponin homo 99.7 1E-18 3.6E-23 170.0 3.6 105 544-670 6-115 (118)
20 1wyq_A Spectrin beta chain, br 99.7 2.2E-18 7.5E-23 169.8 3.6 104 544-669 5-113 (127)
21 1wyl_A NEDD9 interacting prote 99.7 6.2E-18 2.1E-22 164.2 4.4 104 544-670 5-113 (116)
22 2d87_A Smoothelin splice isofo 99.7 5.8E-18 2E-22 167.0 2.9 103 544-668 5-113 (128)
23 2d89_A EHBP1 protein; all alph 99.7 7.6E-18 2.6E-22 164.2 2.5 105 542-669 5-115 (119)
24 2d88_A Protein mical-3; all al 99.7 4.4E-18 1.5E-22 166.4 0.7 105 543-669 6-116 (121)
25 2ix7_C Myosin-5A; contractIle 98.9 3.2E-09 1.1E-13 90.3 7.6 52 730-798 3-54 (58)
26 1wjo_A T-plastin; CH domain, a 98.9 1.3E-09 4.3E-14 106.4 4.6 86 422-514 27-114 (124)
27 1wjo_A T-plastin; CH domain, a 98.8 1.7E-09 5.9E-14 105.5 3.4 98 548-666 9-114 (124)
28 1n2d_C IQ2 and IQ3 motifs from 98.6 5.3E-08 1.8E-12 79.5 6.9 43 774-824 5-47 (48)
29 2ix7_C Myosin-5A; contractIle 98.6 3.9E-08 1.3E-12 83.5 6.3 46 889-934 4-49 (58)
30 1n2d_C IQ2 and IQ3 motifs from 98.6 8.5E-08 2.9E-12 78.2 7.5 46 731-791 2-47 (48)
31 1p2x_A RNG2 protein, RAS GTPas 98.1 5.7E-06 2E-10 84.4 8.7 125 425-570 32-157 (159)
32 1p5s_A RAS GTPase-activating-l 97.9 3.3E-05 1.1E-09 81.8 9.8 71 424-500 75-145 (203)
33 2d89_A EHBP1 protein; all alph 97.6 2.4E-05 8.3E-10 76.0 3.8 92 413-515 18-113 (119)
34 1wyl_A NEDD9 interacting prote 97.5 4.2E-05 1.4E-09 74.0 3.6 92 413-515 16-110 (116)
35 2d88_A Protein mical-3; all al 97.5 6.3E-05 2.2E-09 73.3 4.8 94 411-515 16-114 (121)
36 2d87_A Smoothelin splice isofo 97.5 6.7E-05 2.3E-09 73.9 4.9 95 414-519 17-116 (128)
37 1aoa_A T-fimbrin; actin-bindin 97.4 4.9E-05 1.7E-09 84.1 2.8 82 424-511 189-274 (275)
38 1h67_A Calponin alpha; cytoske 97.3 0.00014 4.9E-09 69.4 4.4 68 425-499 22-89 (108)
39 1bkr_A Spectrin beta chain; fi 97.2 0.00018 6.2E-09 68.8 3.9 89 415-514 14-106 (109)
40 1wyn_A Calponin-2; CH domain, 97.2 0.00029 9.7E-09 70.9 5.0 68 425-499 36-103 (146)
41 1wyp_A Calponin 1; CH domain, 97.2 0.0003 1E-08 69.9 5.1 68 425-499 36-103 (136)
42 1wyr_A RHO guanine nucleotide 97.1 0.00048 1.6E-08 67.1 5.5 66 425-499 33-98 (121)
43 1wyq_A Spectrin beta chain, br 97.1 0.0003 1E-08 69.1 3.9 90 414-514 17-110 (127)
44 1ujo_A Transgelin; CH domain, 97.0 0.00074 2.5E-08 67.7 5.8 73 423-500 32-106 (144)
45 1wdc_A Scallop myosin; calcium 97.0 0.0016 5.3E-08 56.2 7.1 44 732-789 6-49 (64)
46 2bl0_A Major plasmodial myosin 96.9 0.0012 4E-08 56.9 5.9 43 733-789 5-47 (63)
47 1wym_A Transgelin-2; CH domain 96.9 0.00085 2.9E-08 68.1 5.5 70 424-500 41-113 (155)
48 1kk8_A Myosin heavy chain, str 96.9 0.0011 3.7E-08 83.7 7.5 44 804-847 778-824 (837)
49 1bhd_A Utrophin; calponin homo 96.8 0.00023 8E-09 69.0 0.5 90 414-514 18-111 (118)
50 1wdc_A Scallop myosin; calcium 96.7 0.0024 8.2E-08 55.0 6.4 40 807-846 8-50 (64)
51 2bl0_A Major plasmodial myosin 96.7 0.0024 8.2E-08 54.9 6.2 43 774-823 6-48 (63)
52 1i84_S Smooth muscle myosin he 96.7 0.011 3.8E-07 77.7 15.4 41 806-846 793-836 (1184)
53 1wku_A Alpha-actinin 3; calpon 96.7 0.0007 2.4E-08 74.1 3.4 84 421-515 158-245 (254)
54 1sh5_A Plectin 1, PLTN, PCN; a 96.7 0.00038 1.3E-08 75.7 1.2 83 421-514 151-236 (245)
55 3i6x_A P195, RAS GTPase-activa 96.7 0.0016 5.6E-08 68.3 5.9 71 425-499 68-145 (193)
56 1kk8_A Myosin heavy chain, str 96.6 0.0022 7.5E-08 80.9 7.8 49 730-792 777-825 (837)
57 1dxx_A Dystrophin; structural 96.6 0.00036 1.2E-08 76.0 0.4 84 421-514 153-239 (246)
58 2l3g_A RHO guanine nucleotide 96.6 0.0021 7.3E-08 62.9 5.5 65 426-499 39-105 (126)
59 2rr8_A Iqgap1 protein; F-actin 96.5 0.0015 5E-08 68.6 4.3 73 424-500 45-124 (190)
60 3f7p_A Plectin-1; plakin, hemi 96.5 0.00068 2.3E-08 75.7 1.7 83 421-514 207-292 (296)
61 1i84_S Smooth muscle myosin he 96.3 0.013 4.3E-07 77.2 12.4 23 825-847 789-811 (1184)
62 2qjz_A Microtubule-associated 95.9 0.0083 2.8E-07 58.4 5.7 73 429-507 26-98 (123)
63 4db6_A Armadillo repeat protei 95.8 0.041 1.4E-06 56.5 10.8 110 964-1080 17-128 (210)
64 1wyo_A Protein EB3, microtubul 95.6 0.014 4.8E-07 59.1 5.9 73 429-507 43-115 (159)
65 2wa7_A Filamin-B; disease muta 95.4 0.0062 2.1E-07 66.2 3.2 76 422-507 159-237 (245)
66 3hoc_A Filamin-A; calponin hom 95.3 0.0069 2.4E-07 66.9 2.9 74 421-504 185-261 (272)
67 4db8_A Armadillo-repeat protei 95.1 0.06 2E-06 56.8 9.4 108 966-1080 61-170 (252)
68 4hxt_A De novo protein OR329; 94.9 0.14 4.6E-06 53.5 11.3 104 969-1079 12-117 (252)
69 4hxt_A De novo protein OR329; 94.8 0.15 5E-06 53.2 11.2 109 967-1082 52-162 (252)
70 4db6_A Armadillo repeat protei 94.6 0.13 4.6E-06 52.5 10.2 108 968-1082 63-172 (210)
71 4b7l_A Filamin-B; structural p 94.4 0.017 5.7E-07 66.0 3.1 70 422-501 156-226 (347)
72 1sjj_A Actinin; 3-helix bundle 94.4 0.0063 2.1E-07 77.3 -0.4 83 421-514 139-225 (863)
73 1xm9_A Plakophilin 1; armadill 94.3 0.19 6.4E-06 59.0 12.0 124 970-1100 55-195 (457)
74 3tt9_A Plakophilin-2; cell adh 94.3 0.16 5.4E-06 54.7 10.3 128 967-1101 60-205 (233)
75 2kxw_B Sodium channel protein 94.2 0.02 7E-07 40.9 2.0 20 730-749 4-23 (27)
76 2l53_B CAM, voltage-gated sodi 94.1 0.029 9.9E-07 41.4 2.7 21 730-750 4-24 (31)
77 2kxw_B Sodium channel protein 93.9 0.038 1.3E-06 39.5 2.9 19 804-822 5-23 (27)
78 3ul1_B Importin subunit alpha- 93.6 0.16 5.4E-06 60.4 9.6 129 967-1096 151-280 (510)
79 3tpo_A Importin subunit alpha- 93.4 0.16 5.4E-06 60.6 9.1 129 966-1095 169-298 (529)
80 1xqr_A HSPBP1 protein; armadil 93.3 0.33 1.1E-05 54.0 10.8 105 968-1078 91-197 (296)
81 2vzc_A Alpha-parvin; membrane, 93.1 0.096 3.3E-06 51.5 5.4 40 548-587 24-64 (131)
82 2l53_B CAM, voltage-gated sodi 93.0 0.046 1.6E-06 40.3 2.2 22 887-908 3-24 (31)
83 4db8_A Armadillo-repeat protei 93.0 0.33 1.1E-05 51.0 9.9 109 966-1080 103-212 (252)
84 3ky9_A Proto-oncogene VAV; cal 92.6 0.11 3.8E-06 63.2 6.3 77 419-499 28-106 (587)
85 2ee7_A Sperm flagellar protein 92.2 0.15 5.3E-06 49.8 5.5 87 422-514 31-118 (127)
86 4anj_A Unconventional myosin-V 91.4 0.012 4E-07 75.9 -4.6 42 804-846 774-815 (1052)
87 3nmw_A APC variant protein; AR 91.2 1.4 4.9E-05 50.1 13.0 104 979-1087 147-261 (354)
88 3l6x_A Catenin delta-1; cateni 90.4 1.6 5.4E-05 53.1 13.1 123 967-1096 98-241 (584)
89 3gn4_A Myosin-VI; unconvention 89.5 4.9 0.00017 40.1 13.3 34 889-922 44-77 (148)
90 1xm9_A Plakophilin 1; armadill 89.4 1.1 3.6E-05 52.5 10.2 115 974-1097 17-134 (457)
91 2yrn_A Neuron navigator 2 isof 89.0 0.32 1.1E-05 47.4 4.5 42 547-588 19-63 (129)
92 3now_A UNC-45 protein, SD10334 88.9 0.82 2.8E-05 57.7 9.1 117 977-1099 599-717 (810)
93 3tpo_A Importin subunit alpha- 88.8 1.8 6.2E-05 51.4 11.8 112 963-1080 255-367 (529)
94 1wa5_B Importin alpha subunit; 88.7 1.1 3.7E-05 53.0 9.7 97 977-1079 191-288 (530)
95 3ul1_B Importin subunit alpha- 87.5 1.7 6E-05 51.4 10.5 97 977-1079 119-221 (510)
96 3nmw_A APC variant protein; AR 87.1 1.5 5.1E-05 49.9 9.1 102 982-1086 194-302 (354)
97 3gn4_A Myosin-VI; unconvention 86.8 0.92 3.1E-05 45.3 6.2 28 913-940 45-72 (148)
98 3nmz_A APC variant protein; pr 86.2 3.7 0.00013 48.4 12.1 101 982-1087 266-377 (458)
99 1wa5_B Importin alpha subunit; 86.2 2.2 7.4E-05 50.4 10.3 101 972-1079 144-246 (530)
100 3tt9_A Plakophilin-2; cell adh 86.1 1.8 6.1E-05 46.5 8.6 100 979-1085 30-132 (233)
101 4b8j_A Importin subunit alpha- 86.0 1.7 5.9E-05 51.1 9.3 107 968-1080 169-276 (528)
102 4b8j_A Importin subunit alpha- 85.3 2.9 0.0001 49.1 10.8 101 973-1079 132-234 (528)
103 1xqr_A HSPBP1 protein; armadil 85.2 11 0.00036 41.8 14.6 101 972-1079 138-240 (296)
104 1jdh_A Beta-catenin; beta-cate 84.8 2.2 7.4E-05 49.7 9.3 107 967-1080 25-133 (529)
105 2jdq_A Importin alpha-1 subuni 84.2 4.5 0.00016 45.8 11.4 102 971-1079 119-223 (450)
106 3l6x_A Catenin delta-1; cateni 83.0 3.3 0.00011 50.3 10.0 101 978-1085 67-171 (584)
107 1jdh_A Beta-catenin; beta-cate 83.0 4.5 0.00015 47.0 11.0 96 977-1079 78-174 (529)
108 3nmz_A APC variant protein; pr 82.8 2.3 7.7E-05 50.2 8.2 103 980-1085 308-417 (458)
109 2z6h_A Catenin beta-1, beta-ca 81.8 6.4 0.00022 47.8 12.1 59 982-1044 163-221 (644)
110 2qjz_A Microtubule-associated 81.6 1.1 3.7E-05 43.6 4.0 38 548-588 7-44 (123)
111 4abo_I MAL3, microtubule integ 81.6 1.6 5.6E-05 43.4 5.3 81 428-515 26-106 (145)
112 2z6g_A B-catenin; FULL-length, 79.8 11 0.00036 47.3 13.3 95 977-1078 211-306 (780)
113 2z6h_A Catenin beta-1, beta-ca 79.4 5.5 0.00019 48.3 10.3 95 976-1077 74-169 (644)
114 1wyo_A Protein EB3, microtubul 78.4 1.7 5.7E-05 44.1 4.3 39 547-588 23-61 (159)
115 2r8u_A Microtubule-associated 77.2 3.7 0.00013 44.9 6.9 74 428-507 35-108 (268)
116 2jdq_A Importin alpha-1 subuni 77.0 11 0.00039 42.4 11.5 93 979-1078 212-306 (450)
117 1w7j_A Myosin VA; motor protei 76.6 1.5 5.3E-05 55.0 4.3 29 730-758 766-794 (795)
118 2ee7_A Sperm flagellar protein 75.8 1.6 5.4E-05 42.7 3.2 45 547-602 16-61 (127)
119 4anj_A Unconventional myosin-V 75.1 2.7 9.1E-05 54.4 5.9 43 889-932 774-816 (1052)
120 2qjx_A Protein BIM1; calponin 73.5 3.8 0.00013 40.0 5.2 72 428-506 30-101 (127)
121 3grl_A General vesicular trans 70.5 11 0.00038 46.1 9.4 130 955-1099 25-175 (651)
122 1w7j_A Myosin VA; motor protei 69.3 2 7E-05 53.9 2.9 28 804-831 767-794 (795)
123 2z6g_A B-catenin; FULL-length, 66.4 32 0.0011 43.0 12.9 96 978-1080 169-266 (780)
124 1p2x_A RNG2 protein, RAS GTPas 61.3 5.9 0.0002 40.0 4.0 43 546-589 11-55 (159)
125 3now_A UNC-45 protein, SD10334 60.3 19 0.00064 45.5 9.1 92 979-1077 643-737 (810)
126 3grl_A General vesicular trans 60.2 17 0.0006 44.4 8.4 113 979-1093 186-308 (651)
127 1ujo_A Transgelin; CH domain, 58.7 5.8 0.0002 39.4 3.3 42 546-587 9-55 (144)
128 4dck_A Sodium channel protein 58.1 6.4 0.00022 40.2 3.6 24 730-753 128-151 (168)
129 2r8u_A Microtubule-associated 54.1 15 0.0005 40.2 5.8 38 547-587 16-53 (268)
130 1wyp_A Calponin 1; CH domain, 53.9 6.9 0.00024 38.5 2.9 40 547-588 18-58 (136)
131 3eg5_B Protein diaphanous homo 53.5 28 0.00097 39.9 8.4 103 1000-1103 108-226 (383)
132 4dck_A Sodium channel protein 52.9 9.1 0.00031 39.1 3.7 22 888-909 128-149 (168)
133 1wix_A HOOK homolog 1, RSGI RU 52.4 5.5 0.00019 40.5 2.0 43 544-588 7-49 (164)
134 3opb_A SWI5-dependent HO expre 52.1 56 0.0019 40.9 11.2 121 976-1102 576-709 (778)
135 3i6x_A P195, RAS GTPase-activa 48.6 6.1 0.00021 41.2 1.7 44 544-588 45-90 (193)
136 1h67_A Calponin alpha; cytoske 48.2 5.6 0.00019 37.5 1.2 38 549-588 6-44 (108)
137 1p5s_A RAS GTPase-activating-l 46.6 8.3 0.00028 40.5 2.3 42 546-588 55-98 (203)
138 1wyn_A Calponin-2; CH domain, 46.5 6.9 0.00024 38.9 1.6 40 547-588 18-58 (146)
139 2f31_A Diaphanous protein homo 45.6 51 0.0017 34.9 8.4 86 1000-1086 42-137 (233)
140 3opb_A SWI5-dependent HO expre 44.2 44 0.0015 41.8 8.6 88 989-1083 445-536 (778)
141 2bnx_A Diaphanous protein homo 40.3 68 0.0023 36.7 8.9 85 1001-1086 47-141 (386)
142 1wym_A Transgelin-2; CH domain 37.6 7 0.00024 39.3 0.1 40 547-587 18-63 (155)
143 2rr8_A Iqgap1 protein; F-actin 36.1 8.3 0.00029 40.0 0.3 43 545-588 24-68 (190)
144 2l3g_A RHO guanine nucleotide 32.1 12 0.00042 36.2 0.7 42 547-588 13-61 (126)
145 3dad_A FH1/FH2 domain-containi 31.0 2.5E+02 0.0086 31.6 11.2 78 997-1080 156-234 (339)
146 4abo_I MAL3, microtubule integ 30.3 40 0.0014 33.5 4.1 38 548-588 8-45 (145)
147 1wyr_A RHO guanine nucleotide 28.6 13 0.00044 35.8 0.2 42 547-588 7-55 (121)
148 3dad_A FH1/FH2 domain-containi 20.1 2.7E+02 0.0093 31.3 8.8 70 1003-1078 204-287 (339)
No 1
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=100.00 E-value=8e-38 Score=357.46 Aligned_cols=217 Identities=21% Similarity=0.269 Sum_probs=179.7
Q ss_pred cccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148 412 YQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM 491 (1139)
Q Consensus 412 ~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~ 491 (1139)
|.+++|.+.+..|+||++||+||++|++|+|+|++++ +..++...+.+|+||++||+.||+|+++.|++++| |+
T Consensus 25 WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~-l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~~lv~-----i~ 98 (347)
T 4b7l_A 25 WCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKR-MYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVS-----ID 98 (347)
T ss_dssp HHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCC-CSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCSS-----CC
T ss_pred HHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCc-cChhhcCCcccHHHHHHHHHHHHHHHHHhccccCC-----CC
Confidence 4455667777899999999999999999999999984 44555667789999999999999999999999999 99
Q ss_pred cccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCceecCCC-
Q 001148 492 EDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFS- 570 (1139)
Q Consensus 492 a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFt- 570 (1139)
++||||||+++||||||+||+||||..++....... .....++++.||.|||..+ ++++|+||+
T Consensus 99 ~~DIvdGn~~liLgLiW~li~~~~i~~~~~~~~~~~-------------~~~~~~~k~~LL~W~~~~~--~~~~v~nF~~ 163 (347)
T 4b7l_A 99 SKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDD-------------DAKKQTPKQRLLGWIQNKI--PYLPITNFNQ 163 (347)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTSSCCC--------------------CCCCHHHHHHHHHHHHC--TTSCCCCSSG
T ss_pred cchhhcCCHhhHHHHHHHHHHHHhhhhhhcccccch-------------hhhhhhHHHHHHHHHHhhC--CCcccCCCCC
Confidence 999999999999999999999999987643321111 1235678999999999764 578999999
Q ss_pred CCCchhhHHHHHHhhccCCCCCCCccccc-cchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc---ccC
Q 001148 571 SLTDGKAIWCLLDFYFRKEPCGSCTSKVL-QMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG---CNC 646 (1139)
Q Consensus 571 S~~DGraf~aLI~~~~p~~~lg~~~P~ll-~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~---v~~ 646 (1139)
||+||+|||+|||+| .|+++ +++.+. +.+..-+..+||..|+ +++|++++|+ +..
T Consensus 164 sw~DG~af~aLi~~~---------~P~~~~d~~~l~-----~~~~~~n~~~Af~~Ae-------~~lGip~ll~peDi~~ 222 (347)
T 4b7l_A 164 NWQDGKALGALVDSC---------APGLCPDWESWD-----PQKPVDNAREAMQQAD-------DWLGVPQVITPEEIIH 222 (347)
T ss_dssp GGTTSHHHHHHHHHH---------STTSSTTGGGSC-----TTCHHHHHHHHHHHHH-------HHHCCCCSSCHHHHTC
T ss_pred CccchHHHHHHHHHh---------CCccccchhhcC-----cCCHHHHHHHHHHHHH-------HhcCCCcccCHHHcCC
Confidence 999999999999999 77776 565442 2344458889999986 6799999998 555
Q ss_pred CCCCCccCCCceecccccCCCCccc
Q 001148 647 QSPERRHSNPNCRIVDSEALPDQEE 671 (1139)
Q Consensus 647 ~~pd~r~~~mtyv~~~~~~~~~~~~ 671 (1139)
..||++++ |||++++|+++.+|..
T Consensus 223 ~~pDeksi-mtYvs~~~~~~~~~~~ 246 (347)
T 4b7l_A 223 PDVDEHSV-MTYLSQFPKAKLKPGA 246 (347)
T ss_dssp TTCCHHHH-HHHHTTGGGCCCCTTC
T ss_pred CCCChhHH-HHHHHHHhhhccCccc
Confidence 78999998 8999999999987654
No 2
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=100.00 E-value=4e-37 Score=339.83 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=168.3
Q ss_pred ccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCcccccccc
Q 001148 417 LLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVA 496 (1139)
Q Consensus 417 l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIV 496 (1139)
|.+.+..|+||++||+||++|++|+|+|+++. +..+++.++.+|+||++||+.||+|+++.|++++| |+++|||
T Consensus 60 L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~-l~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~lvn-----I~~~DIv 133 (272)
T 3hoc_A 60 LKCVSKRIANLQTDLSDGLRLIALLEVLSQKK-MHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVS-----IDSKAIV 133 (272)
T ss_dssp HGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSC-CSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCSS-----CCHHHHH
T ss_pred hccCCCCcccHHHHHhhHHHHHHHHHHHcCCc-cccccCCCCccHHHHHHHHHHHHHHHHHcCCcccc-----cccchhh
Confidence 33455689999999999999999999999984 35677788899999999999999999999999999 9999999
Q ss_pred CCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCceecCCC-CCCch
Q 001148 497 NGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFS-SLTDG 575 (1139)
Q Consensus 497 dG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFt-S~~DG 575 (1139)
|||+++||||||+||++|+|+.+.... |. .......++++.||.|||... .|++|+||+ ||+||
T Consensus 134 dGn~kliLgLlW~Li~~~~i~~l~~~~----e~---------~~~~~~~s~k~~LL~W~n~~~--~~~~I~nFs~sw~DG 198 (272)
T 3hoc_A 134 DGNLKLILGLIWTLILHYSISMPMWDE----EE---------DEEAKKQTPKQRLLGWIQNKL--PQLPITNFSRDWQSG 198 (272)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCC-------------------------CCHHHHHHHHHHHHC--TTSCCCCSSGGGTTS
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhccc----cc---------cccccccCHHHHHHHHHHhhC--CCCCCCChhhcccch
Confidence 999999999999999999998764211 10 011234578999999999863 389999999 99999
Q ss_pred hhHHHHHHhhccCCCCCCCccccc-cchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc---ccCCCCCC
Q 001148 576 KAIWCLLDFYFRKEPCGSCTSKVL-QMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG---CNCQSPER 651 (1139)
Q Consensus 576 raf~aLI~~~~p~~~lg~~~P~ll-~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~---v~~~~pd~ 651 (1139)
++||+|||+| +|+++ +++.+. +.+...+..+||..|+ +++|++++++ +....||+
T Consensus 199 ~af~aLi~~~---------~P~li~d~~~l~-----~~~~~~n~~~Af~~Ae-------~~lGi~~ll~peDiv~~~pD~ 257 (272)
T 3hoc_A 199 RALGALVDSC---------APGLCPDWDSWD-----ASKPVTNAREAMQQAD-------DWLGIPQVITPEEIVDPNVDK 257 (272)
T ss_dssp HHHHHHHHHH---------STTSSTTGGGSC-----TTCHHHHHHHHHHHHH-------HHHCCCCSSCHHHHTCTTCCH
T ss_pred HHHHHHHHHh---------CcccccchhhcC-----ccCHHHHHHHHHHHHH-------HhCCCCccCCHHHhccCCCCh
Confidence 9999999999 88887 665442 2445568889999986 6799999998 44567999
Q ss_pred ccCCCceecccccC
Q 001148 652 RHSNPNCRIVDSEA 665 (1139)
Q Consensus 652 r~~~mtyv~~~~~~ 665 (1139)
+++ ||||+++|++
T Consensus 258 ksi-mtYvs~~~~a 270 (272)
T 3hoc_A 258 HSV-MTYLSQFPKA 270 (272)
T ss_dssp HHH-HHHHTTCC--
T ss_pred HHH-HHHHHHhhcc
Confidence 998 8999999875
No 3
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=100.00 E-value=9.3e-37 Score=340.08 Aligned_cols=209 Identities=25% Similarity=0.422 Sum_probs=177.8
Q ss_pred cccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148 412 YQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM 491 (1139)
Q Consensus 412 ~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~ 491 (1139)
|.++.|.+.+..|+||++||+||++||+|+|+|+++.. .+ .++.+|+|+++||+.||+|+++.|++++| |+
T Consensus 81 WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l--~~--~~~~~r~~kleNvn~aL~~lk~~gv~lv~-----I~ 151 (296)
T 3f7p_A 81 WVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSL--PR--EKGRMRFHKLQNVQIALDYLRHRQVKLVN-----IR 151 (296)
T ss_dssp HHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCC--CC--CCCSSHHHHHHHHHHHHHHHHHTTCCCTT-----CC
T ss_pred HHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcc--cc--cCCcChhhhhhhHHHHHHHHHHhCccccC-----CC
Confidence 34445555567899999999999999999999998842 12 35678999999999999999999999999 99
Q ss_pred cccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC-CceecCCC
Q 001148 492 EDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY-DFRINNFS 570 (1139)
Q Consensus 492 a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y-gv~V~NFt 570 (1139)
++||||||+++||||||+||++|+++.+.... ..+..++++.||.|||..++.| |++|+||+
T Consensus 152 ~~DIvdGn~kliLgLlW~Li~~~~i~~i~~~g-----------------~~~~~s~k~~LL~W~n~~~~~y~~v~I~nFs 214 (296)
T 3f7p_A 152 NDDIADGNPKLTLGLIWTIILHFQISDIQVSG-----------------QSEDMTAKEKLLLWSQRMVEGYQGLRCDNFT 214 (296)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTTCCCSS-----------------CCTTSCHHHHHHHHHHHHTTTSTTCCCCCSS
T ss_pred hhhhhccchHHHHHHHHHhhcccceeeeeccC-----------------CcccCCHHHHHHHHHHHHhcCCCCCcCCCcc
Confidence 99999999999999999999999998763111 1234578899999999999999 89999998
Q ss_pred -CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc---ccC
Q 001148 571 -SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG---CNC 646 (1139)
Q Consensus 571 -S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~---v~~ 646 (1139)
||+||++||+|||+| +|++++++.+.. .+...+..+||..|+ +++|++++++ ++.
T Consensus 215 ~sw~DG~af~aLI~~~---------~P~lid~~~l~~-----~~~~~N~~~Af~~Ae-------~~LGi~~ll~pEDi~~ 273 (296)
T 3f7p_A 215 SSWRDGRLFNAIIHRH---------KPLLIDMNKVYR-----QTNLENLDQAFSVAE-------RDLGVTRLLDPEDVDV 273 (296)
T ss_dssp GGGTTSHHHHHHHHHH---------CGGGCCHHHHTT-----SCHHHHHHHHHHHHH-------HHHCCCCCCCHHHHSS
T ss_pred ccccccHHHHHHHHHH---------CcCccCHHHcCc-----ccHHHHHHHHHHHHH-------HhCCCCccCCHHHhcC
Confidence 999999999999999 999999887642 344457889999986 6799999998 666
Q ss_pred CCCCCccCCCceecccccCCCC
Q 001148 647 QSPERRHSNPNCRIVDSEALPD 668 (1139)
Q Consensus 647 ~~pd~r~~~mtyv~~~~~~~~~ 668 (1139)
..||++++ ||||+++|+.|+.
T Consensus 274 ~~pDeksi-mtyvs~ly~~fp~ 294 (296)
T 3f7p_A 274 PQPDEKSI-ITYVSSLYDAMPR 294 (296)
T ss_dssp SSCCHHHH-HHHHHHHHHTCC-
T ss_pred CCCcHHHH-HHHHHHHHHHCcC
Confidence 78999998 8999999999985
No 4
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=100.00 E-value=2.7e-36 Score=331.37 Aligned_cols=208 Identities=18% Similarity=0.331 Sum_probs=177.0
Q ss_pred cccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148 412 YQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM 491 (1139)
Q Consensus 412 ~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~ 491 (1139)
|.++.|.+.++.|+||++||+||++||+|+|.|+++. ..+. ..+.+|+|+++||+.||+|+++.||+++| |+
T Consensus 35 WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~--v~k~-~~~~~~~~~~eNi~~aL~~~k~~gv~lv~-----I~ 106 (254)
T 1wku_A 35 WCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGER--LPRP-DKGKMRFHKIANVNKALDFIASKGVKLVS-----IG 106 (254)
T ss_dssp HHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSC--CCCC-CSCCSHHHHHHHHHHHHHHHHTTTCCCCS-----CC
T ss_pred HHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCC--CCCC-CCCccHHHHHHhHHHHHHHHHHcCCCccC-----CC
Confidence 3445555666789999999999999999999999873 2232 23468999999999999999999999999 99
Q ss_pred cccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC-CceecCCC
Q 001148 492 EDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY-DFRINNFS 570 (1139)
Q Consensus 492 a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y-gv~V~NFt 570 (1139)
++||||||+++||||+|+||.+|+++.+.. ...++++.||.|||..+++| |++|+||+
T Consensus 107 ~~DIvdG~~kliLgLlW~li~~~~i~~i~~---------------------~~~~~~~~LL~W~~~~~~~y~~v~v~nFs 165 (254)
T 1wku_A 107 AEEIVDGNLKMTLGMIWTIILRFAIQDISV---------------------EETSAKEGLLLWCQRKTAPYRNVNVQNFH 165 (254)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTTTCEE---------------------TTEEHHHHHHHHHHHHHTTCTTCCCCSSS
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhccccc---------------------ccccHHHHHHHHHHHHccCCCCCcCCCCc
Confidence 999999999999999999999999987521 13467899999999999999 89999999
Q ss_pred -CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc----cc
Q 001148 571 -SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG----CN 645 (1139)
Q Consensus 571 -S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~----v~ 645 (1139)
||+||++||+|||+| +|++++++.+. +++.-.+..+||..|+ +++|++++++ ++
T Consensus 166 ~s~~DG~a~~aLi~~~---------~P~~id~~~l~-----~~~~~~n~~~a~~~A~-------~~lGi~~~l~peDiv~ 224 (254)
T 1wku_A 166 TSWKDGLALCALIHRH---------RPDLIDYAKLR-----KDDPIGNLNTAFEVAE-------KYLDIPKMLDAEDIVN 224 (254)
T ss_dssp GGGTTSHHHHHHHHHH---------CTTSCCGGGCC-----TTCHHHHHHHHHHHHH-------HHSCCCCCSCHHHHHH
T ss_pred cchhhHHHHHHHHHHH---------CCCcccccccC-----cCCHHHHHHHHHHHHH-------HHcCCCCcCCHHHHhc
Confidence 999999999999999 89999887653 2444467888999886 6799999998 47
Q ss_pred CCCCCCccCCCceecccccCCCCcc
Q 001148 646 CQSPERRHSNPNCRIVDSEALPDQE 670 (1139)
Q Consensus 646 ~~~pd~r~~~mtyv~~~~~~~~~~~ 670 (1139)
+..||++++ ||||+.+|+.|+..+
T Consensus 225 ~~~pD~k~i-mtyva~l~~~~~~~~ 248 (254)
T 1wku_A 225 TPKPDEKAI-MTYVSCFYHAFAGAE 248 (254)
T ss_dssp SSSCCHHHH-HHHHHHHHHHHHHC-
T ss_pred cCCCcHHHH-HHHHHHHHHHhhccc
Confidence 788999998 899999999988543
No 5
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=100.00 E-value=6.8e-36 Score=326.71 Aligned_cols=211 Identities=21% Similarity=0.270 Sum_probs=173.6
Q ss_pred cccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148 412 YQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM 491 (1139)
Q Consensus 412 ~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~ 491 (1139)
|.++.|.+.+..|+||++||+||++||+|+|+|+++. +..+++.++.+|+|+++||+.||+|+++.|++++| |+
T Consensus 28 WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~-~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g~~lv~-----I~ 101 (245)
T 2wa7_A 28 WCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKR-MYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVS-----ID 101 (245)
T ss_dssp HHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCC-CSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCCS-----CC
T ss_pred HHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCC-CchhcCCCCCcHHHHHHHHHHHHHHHHHcCCcccC-----CC
Confidence 3445556677899999999999999999999999984 34677788889999999999999999999999999 99
Q ss_pred cccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCceecCCC-
Q 001148 492 EDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFS- 570 (1139)
Q Consensus 492 a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFt- 570 (1139)
++||||||+++||||||+||++|+++.++.... +. ......++++.||.|||..+. |++|+||+
T Consensus 102 ~~DIvdG~~kliLgLlW~li~~~~i~~~~~~~~---~~----------~~~~~~~~~~~LL~W~~~~~~--~~~v~nFs~ 166 (245)
T 2wa7_A 102 SKAIVDGNLKLILGLVWTLILHYSISMPVWEDE---GD----------DDAKKQTPKQRLLGWIQNKIP--YLPITNFNQ 166 (245)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTSSCCSSC---C--------------CCCCHHHHHHHHHHHHST--TSCCCCSSG
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHcccccccccc---cc----------cccccccHHHHHHHHHHHhCC--CCCCCCCcc
Confidence 999999999999999999999999987642110 00 013355788999999998753 68999998
Q ss_pred CCCchhhHHHHHHhhccCCCCCCCccccc-cchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc---ccC
Q 001148 571 SLTDGKAIWCLLDFYFRKEPCGSCTSKVL-QMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG---CNC 646 (1139)
Q Consensus 571 S~~DGraf~aLI~~~~p~~~lg~~~P~ll-~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~---v~~ 646 (1139)
||+||++||+|||+| +|+++ +++.+. +++.-.+..+||..|+ +++|++++++ +..
T Consensus 167 s~~dG~a~~aLi~~~---------~P~~i~~~~~l~-----~~~~~~n~~~a~~~A~-------~~lGi~~~l~peDi~~ 225 (245)
T 2wa7_A 167 NWQDGKALGALVDSC---------APGLCPDWESWD-----PQKPVDNAREAVQQAD-------DWLGVPQVITPEEIIH 225 (245)
T ss_dssp GGTTSHHHHHHHHHH---------STTSSTTGGGSC-----TTCHHHHHHHHHHHHH-------HHSCCCCSSCHHHHTC
T ss_pred cchhhHHHHHHHHHH---------CccccccccccC-----cccHHHHHHHHHHHHH-------HhCCCCccCCHHHhcc
Confidence 999999999999999 77777 565442 2344457888999886 6699999998 444
Q ss_pred CCCCCccCCCceecccccC
Q 001148 647 QSPERRHSNPNCRIVDSEA 665 (1139)
Q Consensus 647 ~~pd~r~~~mtyv~~~~~~ 665 (1139)
..||++++ |||++++|++
T Consensus 226 ~~~d~ksi-~tyvs~~~~~ 243 (245)
T 2wa7_A 226 PDVDEHSV-MTYLSQFPKA 243 (245)
T ss_dssp TTCCHHHH-HHHHTHHHHC
T ss_pred CCCcHHHH-HHHHHHHhcc
Confidence 67999998 8999988764
No 6
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=100.00 E-value=3.6e-35 Score=321.02 Aligned_cols=202 Identities=26% Similarity=0.433 Sum_probs=173.3
Q ss_pred ccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCC
Q 001148 419 EYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANG 498 (1139)
Q Consensus 419 e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG 498 (1139)
+++..|+||++||+||++||+|+|.|++++.. +.++.+|+|+++||+.||+++++.|++++| |+++|||||
T Consensus 32 ~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~----~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~-----I~~~DIvdg 102 (245)
T 1sh5_A 32 EAQRHISDLYEDLRDGHNLISLLEVLSGDSLP----REKGRMRFHKLQNVQIALDYLRHRQVKLVN-----IRNDDIADG 102 (245)
T ss_dssp GGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC----CCCCCSHHHHHHHHHHHHHHHHHTTCCCCS-----CCHHHHHTT
T ss_pred cCCCCccchHhhccCHHHHHHHHHHhcCcccc----CCCCcchHHHHHhHHHHHHHHHHcCCcccC-----CChHhhhcc
Confidence 47789999999999999999999999987421 235678999999999999999999999999 999999999
Q ss_pred CccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC-CceecCCC-CCCchh
Q 001148 499 DKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGK 576 (1139)
Q Consensus 499 ~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGr 576 (1139)
|+++||||+|+||.+|+++.+... + .....++++.||.|||.+++.| |++|+||+ ||+||+
T Consensus 103 ~~k~iLgLlw~li~~~~i~~i~~~-----------g------~~~~~~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~ 165 (245)
T 1sh5_A 103 NPKLTLGLIWTIILHFQISDIQVS-----------G------QSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGR 165 (245)
T ss_dssp CHHHHHHHHHHHHHHHTTTTCCCT-----------T------CCSSCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSH
T ss_pred cHHHHHHHHHHHHHhhcccccccc-----------c------ccccCCHHHHHHHHHHHHhccCCCcccCCccccccchH
Confidence 999999999999999999875211 1 0124567899999999999999 89999998 999999
Q ss_pred hHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc---ccCCCCCCcc
Q 001148 577 AIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG---CNCQSPERRH 653 (1139)
Q Consensus 577 af~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~---v~~~~pd~r~ 653 (1139)
+||+|||+| .|++++++.+.. .+...+..+||..|+ +++|++++++ +....||+++
T Consensus 166 a~~aLi~~~---------~P~~i~~~~l~~-----~~~~~n~~~a~~~a~-------~~lGi~~~l~peDi~~~~pd~k~ 224 (245)
T 1sh5_A 166 LFNAIIHRH---------KPMLIDMNKVYR-----QTNLENLDQAFSVAE-------RDLGVTRLLDPEDVDVPQPDEKS 224 (245)
T ss_dssp HHHHHHHTT---------CTTTCCHHHHHH-----SCHHHHHHHHHHHHH-------HHHCCCCCCCHHHHSSSSCCHHH
T ss_pred HHHHHHHHH---------CCCCCCHHHccc-----CCHHHHHHHHHHHHH-------HhCCCCccCCHHHhccCCCcHHH
Confidence 999999999 899998887643 344457888998886 5799999998 5566899999
Q ss_pred CCCceecccccCCCC
Q 001148 654 SNPNCRIVDSEALPD 668 (1139)
Q Consensus 654 ~~mtyv~~~~~~~~~ 668 (1139)
+ |||++.+|+.|++
T Consensus 225 i-~tyva~l~~~~~~ 238 (245)
T 1sh5_A 225 I-ITYVSSLYDAMPR 238 (245)
T ss_dssp H-HHHHHHHHHHCC-
T ss_pred H-HHHHHHHHHHcCC
Confidence 8 8999999999986
No 7
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=100.00 E-value=2.9e-34 Score=314.09 Aligned_cols=202 Identities=25% Similarity=0.421 Sum_probs=170.2
Q ss_pred ccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccc
Q 001148 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKEL 502 (1139)
Q Consensus 423 ~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~ 502 (1139)
.|+||++||+||++||+|+|.|++.. + .+ .++.+|+|+++||+.||+++++.|++++| |+++||||||+++
T Consensus 36 ~v~dl~~dl~DG~~L~~Lle~l~~~~-~-~~--~~~~~~~~~~eNv~~aL~~~k~~g~~l~~-----I~~~DIvdg~~~l 106 (246)
T 1dxx_A 36 HIENLFSDLQDGRRLLDLLEGLTGQK-L-PK--EKGSTRVHALNNVNKALRVLQNNNVDLVN-----IGSTDIVDGNHKL 106 (246)
T ss_dssp CCSCTTTTTTTSHHHHHHHHHHHSCC-C-CC--CCCSSHHHHHHHHHHHHHHHHHTTCCCTT-----CCHHHHHTTCHHH
T ss_pred CccCHHHHhCcHHHHHHHHHHHcCCc-C-CC--CCCccHHHHHHHHHHHHHHHHHcCCcccc-----CCHHHhhcccHHH
Confidence 68999999999999999999999873 1 12 25678999999999999999999999999 9999999999999
Q ss_pred hhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHH
Q 001148 503 ILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWC 580 (1139)
Q Consensus 503 tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~a 580 (1139)
||||+|+||.+|+++.++. |+. . .....++++.||.|||.+++.| |++|+||+ ||+||++||+
T Consensus 107 iL~Llw~li~~~~i~~~~~------e~~--~-------~~~~~~~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~a 171 (246)
T 1dxx_A 107 TLGLIWNIILHWQVKNVMK------NIM--A-------GLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNA 171 (246)
T ss_dssp HHHHHHHHHHHHTTTHHHH------HHH--H-------HHTTCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh------hhh--h-------hcccccHHHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHH
Confidence 9999999999999987642 111 0 0123457889999999999999 79999998 9999999999
Q ss_pred HHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc---ccCCCCCCccCCCc
Q 001148 581 LLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG---CNCQSPERRHSNPN 657 (1139)
Q Consensus 581 LI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~---v~~~~pd~r~~~mt 657 (1139)
|||+| +|++++++.+.. ..+...+...||..|+ +++|++++++ +....||++++ ||
T Consensus 172 Li~~~---------~P~li~~~~~~~----~~~~~~n~~~a~~~A~-------~~lGi~~~l~peDi~~~~pD~k~i-~t 230 (246)
T 1dxx_A 172 LIHSH---------RPDLFDWNSVVS----QQSATQRLEHAFNIAR-------YQLGIEKLLDPEDVDTTYPDKKSI-LM 230 (246)
T ss_dssp HHHHH---------CGGGSCHHHHHT----CCCHHHHHHHHHHHHH-------HTTCCCCCCCHHHHSSSSCCHHHH-HH
T ss_pred HHHHH---------CcCccchhhhcc----cCCHHHHHHHHHHHHH-------HhCCCCccCCHHHhhcCCCcHHHH-HH
Confidence 99999 899998876642 1233346778888885 6899999998 56678999998 89
Q ss_pred eecccccCCCCc
Q 001148 658 CRIVDSEALPDQ 669 (1139)
Q Consensus 658 yv~~~~~~~~~~ 669 (1139)
||+.+|+.|++.
T Consensus 231 yva~l~~~~~~~ 242 (246)
T 1dxx_A 231 YITSLFQVLPQQ 242 (246)
T ss_dssp HHHHHHTTSCCC
T ss_pred HHHHHHHHccCC
Confidence 999999999863
No 8
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.97 E-value=4.2e-32 Score=301.57 Aligned_cols=223 Identities=20% Similarity=0.241 Sum_probs=164.3
Q ss_pred cccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 420 YDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 420 ~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
.+..|+||++||+||++||+|+|.|++++...++++.|+.+++|+++||+.||+++++.|++++| |+++|||||+
T Consensus 49 i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~-----I~~~DIvdg~ 123 (275)
T 1aoa_A 49 MNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVN-----IGAEDLRAGK 123 (275)
T ss_dssp CCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHHHTTCCCTT-----CCHHHHHTTC
T ss_pred CCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcccC-----CCHHHHHcCc
Confidence 34578999999999999999999999885444567777778999999999999999999999999 9999999999
Q ss_pred ccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCce-ecCCC-CCCchhh
Q 001148 500 KELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFR-INNFS-SLTDGKA 577 (1139)
Q Consensus 500 ~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv~-V~NFt-S~~DGra 577 (1139)
+++||||+|+||.+|++..+- .+.. +++..+.............++++.||.|||.++..+|.. |+||+ ||+||++
T Consensus 124 ~~liLgLlw~li~~~~~~~I~-~~~~-~~l~~ll~~ge~~~~~~~~s~~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a 201 (275)
T 1aoa_A 124 PHLVLGLLWQIIKIGLFADIE-LSRN-EALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKA 201 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SSCT-TCC--------CHHHHHTSCHHHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHH
T ss_pred HHHHHHHHHHHHHHhhhcccc-cccC-hHHHHhhccCCchhhhhccCHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhHH
Confidence 999999999999999887652 1110 111111100000001123578999999999999888765 99998 9999999
Q ss_pred HHHHHHhhccCCC-CCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc-ccCCCCCCccCC
Q 001148 578 IWCLLDFYFRKEP-CGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG-CNCQSPERRHSN 655 (1139)
Q Consensus 578 f~aLI~~~~p~~~-lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~-v~~~~pd~r~~~ 655 (1139)
||+|||+|.|... .|. ..-+++++.+ .+++...+..+||..| +++|++++++ -|+..|+++++
T Consensus 202 ~~aLi~~~~P~~~~~~~-~~l~~~~~~~-----~~~~~~~n~~~a~~~A--------~~lGi~~~l~peDi~~~~~k~i- 266 (275)
T 1aoa_A 202 YFHLLNQIAPKGQKEGE-PRIDINMSGF-----NETDDLKRAESMLQQA--------DKLGCRQFVTPADVVSGNPKLN- 266 (275)
T ss_dssp HHHHHHHHSCCSCSSSC-CCCCCCCTTT-----TCSSHHHHHHHHHHHH--------TTTTCCCSCCHHHHHTTCHHHH-
T ss_pred HHHHHHHHCCCcccccc-ccccccccCC-----CccCHHHHHHHHHHHH--------HHcCCCCcCCHHHcCCCChhHH-
Confidence 9999999944321 000 0004444433 1234445778888877 5799999998 34556788886
Q ss_pred Cceeccccc
Q 001148 656 PNCRIVDSE 664 (1139)
Q Consensus 656 mtyv~~~~~ 664 (1139)
||||+..|+
T Consensus 267 ~tyva~Lfn 275 (275)
T 1aoa_A 267 LAFVANLFN 275 (275)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 899987664
No 9
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.97 E-value=1.4e-31 Score=340.04 Aligned_cols=208 Identities=18% Similarity=0.333 Sum_probs=176.1
Q ss_pred cccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148 412 YQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM 491 (1139)
Q Consensus 412 ~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~ 491 (1139)
|.++.|.+.++.|+||++||+||++||+|+|+|++++ +.+.. .+.+|+|+++||+.||+|++..||+++| |+
T Consensus 16 Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~--~~~~~-~~~~~~~~~eN~~~~l~~~~~~g~~~~~-----i~ 87 (863)
T 1sjj_A 16 WCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGER--LAKPE-RGKMRVHKISNVNKALDFIASKGVKLVS-----IG 87 (863)
T ss_dssp HHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCC--CCCSC-CCSSHHHHHHHHHHHHHHHHHTTCCCTT-----CC
T ss_pred HHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCc--eeCCC-CCccHHHHHHHHHHHHHHHHHcCCccCC-----CC
Confidence 3444555566789999999999999999999999883 22322 3468999999999999999999999999 99
Q ss_pred cccccCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC-CceecCCC
Q 001148 492 EDDVANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY-DFRINNFS 570 (1139)
Q Consensus 492 a~DIVdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y-gv~V~NFt 570 (1139)
++||||||+++||||||+||.+|+++.+.. ...++++.||.|||..+++| |++|+||+
T Consensus 88 ~~di~~g~~~~~l~l~w~l~~~~~~~~~~~---------------------~~~~~~~~ll~W~~~~~~~~~~~~v~nf~ 146 (863)
T 1sjj_A 88 AEEIVDGNVKMTLGMIWTIILRFAIQDISV---------------------EETSAKEGLLLWYQRKTAPYKNVNIQNFH 146 (863)
T ss_dssp SHHHHTTCHHHHHHHHHHHHSCCCCCCCCC---------------------CCCCSTTTTHHHHHHHHTTSTTCCCCSSS
T ss_pred hHHhhcCCHHHHHHHHHHHHHHHhhcccch---------------------hccchHHHHHHHHHHhccCCCCCCCCCCc
Confidence 999999999999999999999999986521 12345678999999999999 89999999
Q ss_pred -CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc----cc
Q 001148 571 -SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG----CN 645 (1139)
Q Consensus 571 -S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~----v~ 645 (1139)
||+||++||+|||+| .|++++++.+.. ++...+..+||..++ +.+|++++++ |+
T Consensus 147 ~s~~dg~~~~~li~~~---------~p~~~~~~~~~~-----~~~~~n~~~a~~~a~-------~~lg~~~~l~~ed~~~ 205 (863)
T 1sjj_A 147 ISWKDGLGFCALIHRH---------RPELIDYGKLRK-----DDPLTNLNTAFDVAE-------KYLDIPKMLDAEDIVG 205 (863)
T ss_dssp GGGTTSHHHHHHHHTT---------CCSSSCSGGGGS-----CCCGGGCTHHHHHHH-------HHHCCCCSCCHHHHTT
T ss_pred cccccHHHHHHHHHHh---------CCCCcChhhCCC-----CCHHHHHHHHHHHHH-------HhCCCCCccCHHHHhC
Confidence 999999999999999 888998876642 344456778998886 5699999998 57
Q ss_pred CCCCCCccCCCceecccccCCCCcc
Q 001148 646 CQSPERRHSNPNCRIVDSEALPDQE 670 (1139)
Q Consensus 646 ~~~pd~r~~~mtyv~~~~~~~~~~~ 670 (1139)
++.||++++ ||||+.+|+.|++..
T Consensus 206 ~~~pd~~~~-~~y~~~l~~~~~~~~ 229 (863)
T 1sjj_A 206 TARPDEKAI-MTYVSSFYHAFSGAQ 229 (863)
T ss_dssp CSSCCHHHH-HHHHHHTTTTTCCCS
T ss_pred CCCCcHHHH-HHHHHHHHHHhcccc
Confidence 789999998 899999999998643
No 10
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.96 E-value=3.9e-30 Score=308.34 Aligned_cols=207 Identities=17% Similarity=0.228 Sum_probs=163.1
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccC-CCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVP-SDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p-~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
+..|+||++||+||++|++|+|.|+++....++++.| ..+|+|+++||+.||+|+++.|++++| |+++||||||
T Consensus 291 ~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k~~~v~l~~-----I~~~dIvdg~ 365 (506)
T 1pxy_A 291 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVN-----VAGNDIVQGN 365 (506)
T ss_dssp SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCCS-----CCHHHHHTTC
T ss_pred CCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHHHcCCcccC-----CCHHHHhcCC
Confidence 4689999999999999999999999884334455454 468999999999999999999999999 9999999999
Q ss_pred ccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccC--CceecCCC--CCCch
Q 001148 500 KELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKY--DFRINNFS--SLTDG 575 (1139)
Q Consensus 500 ~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~y--gv~V~NFt--S~~DG 575 (1139)
+++||||+|+|| ||++..+++. ++... .+. ...++.||.|||..++.| +++|+||+ ||+||
T Consensus 366 ~kl~L~Liw~li-r~~i~~~~~~---------l~~~~----~~~-~~~~~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG 430 (506)
T 1pxy_A 366 KKLILGLLWQLM-RFHMLQLLKS---------LRSRT----LGK-EMTDADILSWANRKVRTMGRKLQIESFKDKSLSSG 430 (506)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHT---------TCC----------CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGC
T ss_pred HHHHHHHHHHHH-HHhhHHHHHH---------hhccc----ccc-cccHHHHHHHHHHHhhhcCCccccCCCCcccccch
Confidence 999999999998 8998765421 11000 011 123678999999999854 78999996 99999
Q ss_pred hhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc-ccCCCCCCccC
Q 001148 576 KAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG-CNCQSPERRHS 654 (1139)
Q Consensus 576 raf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~-v~~~~pd~r~~ 654 (1139)
+|||+|||+| +|++++++.+... ...++...+..+||..| +++|++++++ -|+..||++++
T Consensus 431 ~a~~aLi~~~---------~P~li~~~~l~~~-~s~~~~~~N~~~a~~~a--------~~lGi~~~l~peDi~~~d~ksi 492 (506)
T 1pxy_A 431 LFFLNLLWAV---------EPRVVNWNLVTKG-ETDDEKRLNATYIVSVA--------RKLGCSVFLLPEDIVEVNQKMI 492 (506)
T ss_dssp HHHHHHHHHH---------CGGGCCTTSCCCS-CSHHHHHHHHHHHHHHH--------HHHTCCCCCCHHHHHTTCHHHH
T ss_pred HHHHHHHHhh---------CCCeeehhhcccC-CCchhHHHHHHHHHHHH--------HHcCCCCcCCHHHccCCChhHH
Confidence 9999999999 8999988766421 11123334777888877 4699999998 24445799987
Q ss_pred CCceecccccCC
Q 001148 655 NPNCRIVDSEAL 666 (1139)
Q Consensus 655 ~mtyv~~~~~~~ 666 (1139)
|||++.+|..+
T Consensus 493 -~tyv~~l~~~~ 503 (506)
T 1pxy_A 493 -LILTASIMYWS 503 (506)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 89999877654
No 11
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.96 E-value=1.2e-29 Score=304.42 Aligned_cols=219 Identities=16% Similarity=0.217 Sum_probs=168.8
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccC----CCCchhHHhhHHHHHHHHHHcCC-cccCCCCCccccccc
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVP----SDTHRKNSVNCSIALQYLRQAGV-KLYDEDGTAIMEDDV 495 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p----~~~R~~ki~Nv~~AL~~lk~~gi-~l~~~~g~~I~a~DI 495 (1139)
+..|+||++||+||++||+|+|.|++++...++++.| +.+|+|+++|++.||++++..|+ +++| |+++||
T Consensus 38 ~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~~eNi~~~L~~~k~~g~~~l~~-----i~~~DI 112 (513)
T 1rt8_A 38 NTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITN-----IGAGDI 112 (513)
T ss_dssp CTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHHHHHHHHHHHHHSSCCCSS-----CCHHHH
T ss_pred CCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHHHHHHHHHHHHHHHHcCCCccCC-----cCHHhh
Confidence 4568999999999999999999999885444667665 57899999999999999999999 9998 999999
Q ss_pred cCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHcc--CCceecCCC-CC
Q 001148 496 ANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEK--YDFRINNFS-SL 572 (1139)
Q Consensus 496 VdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~--ygv~V~NFt-S~ 572 (1139)
|||++++||||+|+||++|+++.+ +.. ...|+.++.+...........++++.||.|||.++.. |+++|+||+ ||
T Consensus 113 ~dg~~~liLgLiW~li~~~~l~~i-~~~-~~pel~~l~~~~e~~~~~~~~~~~~~LL~W~n~~l~~~g~~~~V~nFs~s~ 190 (513)
T 1rt8_A 113 LEGREHLILGLVWQIIRRGLLGKI-DIT-LHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDV 190 (513)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSCCC------------------CHHHHTTSCHHHHHHHHHHHHHHHTTCSCCCSCSSGGG
T ss_pred hcCCHHHHHHHHHHHHHHhhhccc-ccc-cCHHHHhhhccCCchhhhhcCCHHHHHHHHHHHHHHhcCCCcCcccchhhh
Confidence 999999999999999999999876 211 1234433322211111123467899999999998754 678999999 99
Q ss_pred CchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc-ccCCCCCC
Q 001148 573 TDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG-CNCQSPER 651 (1139)
Q Consensus 573 ~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~-v~~~~pd~ 651 (1139)
+||++||+|+|++ .|++++++.+. +++...+..++|..++ ++|++++++ -|+..|++
T Consensus 191 ~DG~a~~aLl~~~---------~P~~i~~~~l~-----~~~~~~n~~~a~~~a~--------~lgi~~~l~peDi~~~~~ 248 (513)
T 1rt8_A 191 SDGENYTVLLNQL---------APELCSRAPLQ-----TTDVLQRAEQVLQNAE--------KLDCRKYLTPTAMVAGNP 248 (513)
T ss_dssp TTSHHHHHHHHHH---------CTTTCCSGGGG-----CCCHHHHHHHHHHHHH--------TTTCCCSCCHHHHHTTCH
T ss_pred hccHHHHHHHHHH---------CccccccCCCC-----ccCHHHHHHHHHHHHH--------HcCCCccCCHHHhcCCCH
Confidence 9999999999999 78888765442 2344457778888774 599999998 24444677
Q ss_pred ccCCCceecccccCCCCc
Q 001148 652 RHSNPNCRIVDSEALPDQ 669 (1139)
Q Consensus 652 r~~~mtyv~~~~~~~~~~ 669 (1139)
+++ ||||+++|+.+++.
T Consensus 249 k~i-l~yva~l~~~~~~~ 265 (513)
T 1rt8_A 249 KLN-LAFVAHLFNTHPGL 265 (513)
T ss_dssp HHH-HHHHHHHHHHCCCC
T ss_pred HHH-HHHHHHHHhhhccc
Confidence 776 89999999999864
No 12
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.95 E-value=2.4e-29 Score=301.96 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=156.4
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCC-----CCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccc
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPS-----DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDV 495 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~-----~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DI 495 (1139)
+..|+||++||+||++||+|+|.+.++....++++.+| .+|+|+++||+.||+++++.|++++| |+++||
T Consensus 300 ~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~~gv~lv~-----i~~~DI 374 (513)
T 1rt8_A 300 TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVG-----IQGADI 374 (513)
T ss_dssp SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTT-----CCHHHH
T ss_pred CCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHHcCceeec-----cchhhh
Confidence 45799999999999999999996555534456666643 57999999999999999999999999 999999
Q ss_pred cCCCccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHcc-C-CceecCCC--C
Q 001148 496 ANGDKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEK-Y-DFRINNFS--S 571 (1139)
Q Consensus 496 VdG~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~-y-gv~V~NFt--S 571 (1139)
||||+++||||+|+||++|.+..+.+ +.. .....+.+ .||.|||..+.. | +++|+||+ |
T Consensus 375 vdg~~~~~LgLlW~li~~~~~~~l~~----------l~~------~~~~~~~~-~LL~W~~~~~~~~~~~~~i~nF~~~s 437 (513)
T 1rt8_A 375 TDGSRTLTLALVWQMMRMNITKTLHS----------LSR------GGKTLSDS-DMVAWANSMAAKGGKGSQIRSFRDPS 437 (513)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTC----------------------CCCHH-HHHHHHHHHHTTTCSSCCCSSTTCGG
T ss_pred hcCCchhhHHHHHHHHHHHHHHHHHh----------hcc------CCCcCCHH-HHHHHHHHHhhccCCCCCCCCCCccc
Confidence 99999999999999998887654411 110 01123444 499999998874 4 79999997 8
Q ss_pred CCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCcccccc-ccCCCCC
Q 001148 572 LTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLG-CNCQSPE 650 (1139)
Q Consensus 572 ~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~-v~~~~pd 650 (1139)
|+||+|||+|||+| +|++++++.+... ...++...+..+||..|+ ++|++++++ -|+..++
T Consensus 438 ~~dG~a~~aLi~~~---------~P~~i~~~~l~~~-~~~~~~~~n~~~af~~A~--------~lGi~~~l~peDi~~~~ 499 (513)
T 1rt8_A 438 ISTGVFVLDVLHGI---------KSEYVDYNLVTDG-STEELAIQNARLAISIAR--------KLGAVIFILPEDIVAVR 499 (513)
T ss_dssp GGGSHHHHHHHHHH---------CGGGCCGGGCCCC-CSHHHHHHHHHHHHHHHH--------HTTCCCCCCHHHHHTTC
T ss_pred ccchHHHHHHHHHh---------CCCcCCHHhhccc-cChhhHHHHHHHHHHHHH--------HcCCCccCCHHHhcCCC
Confidence 99999999999999 8999988765421 112234457888999884 599999998 1222223
Q ss_pred CccCCCceeccccc
Q 001148 651 RRHSNPNCRIVDSE 664 (1139)
Q Consensus 651 ~r~~~mtyv~~~~~ 664 (1139)
.+++ |||++.+|+
T Consensus 500 pksi-~tyva~l~~ 512 (513)
T 1rt8_A 500 PRLV-LHFIGSLMA 512 (513)
T ss_dssp HHHH-HHHHHHHHT
T ss_pred cccH-HHHHHHHHh
Confidence 3775 899988764
No 13
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.94 E-value=1.3e-27 Score=286.52 Aligned_cols=220 Identities=18% Similarity=0.216 Sum_probs=167.5
Q ss_pred cccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCC-CCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCC
Q 001148 420 YDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPS-DTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANG 498 (1139)
Q Consensus 420 ~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~-~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG 498 (1139)
.+..|+||++||+||++||+|+|.|.+++....+++.++ .+++++++|++.+|++++..|++++| |+++||+||
T Consensus 32 ~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi~~~L~~~k~~g~~~~~-----i~~~Dl~dg 106 (506)
T 1pxy_A 32 LDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVN-----IGTQDLAEG 106 (506)
T ss_dssp CCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHHHHHTTCCCTT-----CCHHHHHHT
T ss_pred CCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHHHHHHHHHHHhCCCcCC-----CCHHHHhcC
Confidence 356799999999999999999999998854345665544 46899999999999999999999999 999999999
Q ss_pred CccchhHHHHHHHHHhhhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHc--cCCceecCCC-CCCch
Q 001148 499 DKELILSLLWNMFVHLQLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICE--KYDFRINNFS-SLTDG 575 (1139)
Q Consensus 499 ~~k~tLgLLW~li~~fqi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~--~ygv~V~NFt-S~~DG 575 (1139)
+.++||||+|+||.+|+++.+ +.+ ..+|+.++.+.+.........++++.||.|||.++. +|+++|+||+ ||+||
T Consensus 107 ~~~liLgLiw~li~~~~l~~i-~~~-~~p~l~~l~~~~e~~~~~~~~~~~~~LL~W~n~~l~~~g~~~~v~nFs~s~~DG 184 (506)
T 1pxy_A 107 RPHLVLGLISQLIKIQLLADL-NLK-KTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDA 184 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHSSS-SSC-C-----------------CCSCHHHHHHHHHHHHHHHTTCCSCCCCSSTTTTTS
T ss_pred ChHHHHHHHHHHHHHHHHHhh-hhc-cCHHHHHhhcCCcchhhhhcCCHHHHHHHHHHHHHHhcCCCccCccccccccch
Confidence 999999999999999999876 221 122333332221111112356789999999998876 4668999998 99999
Q ss_pred hhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhhhhHHHHhhhhhhcCccccccc-cCCCCCCccC
Q 001148 576 KAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFLSSQLIVKKNMDQLNLHKLLGC-NCQSPERRHS 654 (1139)
Q Consensus 576 raf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~~s~l~~k~~l~~lgi~~lL~v-~~~~pd~r~~ 654 (1139)
++||+|+|+| .|++++++.+. +++...+..+||..+ +++|++++++. |+..++.+++
T Consensus 185 ~a~~~Ll~~~---------~P~~i~~~~l~-----~~~~~~n~~~a~~~a--------~~lGi~~~l~peDi~~~~~k~v 242 (506)
T 1pxy_A 185 QAYAFLLNVL---------APEHCDPATLD-----AKDPLERAELVLSHA--------ERMNCKRYLTAEEIVEGSSTLN 242 (506)
T ss_dssp HHHHHHHHHH---------CGGGCCGGGGG-----CCSHHHHHHHHHHHH--------HHTTCCCCCCHHHHHTTCHHHH
T ss_pred HHHHHHHHHh---------CccccccccCC-----cCCHHHHHHHHHHHH--------HHcCCCCcCCHHHHhcCChhHH
Confidence 9999999999 88888876553 245556778888877 45999999982 2223344665
Q ss_pred CCceecccccCCCCc
Q 001148 655 NPNCRIVDSEALPDQ 669 (1139)
Q Consensus 655 ~mtyv~~~~~~~~~~ 669 (1139)
||||+.+|+.+++.
T Consensus 243 -~tyva~l~~~~~~~ 256 (506)
T 1pxy_A 243 -LAFVAQIFHERNGL 256 (506)
T ss_dssp -HHHHHHHHHHCCCC
T ss_pred -HHHHHHHhhhcCCC
Confidence 89999999999864
No 14
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=99.86 E-value=6.8e-23 Score=203.04 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=91.3
Q ss_pred cccccccccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148 412 YQQCLLLEYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM 491 (1139)
Q Consensus 412 ~~Q~~l~e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~ 491 (1139)
|.+++|.++++.|+||++||+||++|++|+|+|+++.....+++.+|.+|+|++|||+.||+|+++.|++++| |+
T Consensus 30 WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~~gi~l~~-----I~ 104 (131)
T 2vzc_A 30 FVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPK-----PR 104 (131)
T ss_dssp HHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHHTTCCCCS-----SC
T ss_pred HHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHHcCCCcCC-----CC
Confidence 4555666667789999999999999999999999986555677777889999999999999999999999999 99
Q ss_pred cccccCCCccchhHHHHHHHHHhhhh
Q 001148 492 EDDVANGDKELILSLLWNMFVHLQLP 517 (1139)
Q Consensus 492 a~DIVdG~~k~tLgLLW~li~~fqi~ 517 (1139)
|+||||||+++||||+|+||.||+..
T Consensus 105 ~~DIvdGn~kliLgLiW~li~~~~~~ 130 (131)
T 2vzc_A 105 PEDIVNCDLKSTLRVLYNLFTKYRNV 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhCCCHHhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999863
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.85 E-value=9e-21 Score=243.51 Aligned_cols=145 Identities=21% Similarity=0.217 Sum_probs=106.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 001148 730 LPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAAL 809 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi 809 (1139)
..+.+|+.||++||||++|++|.+++. ||+.||++|||+++|+.+..++. ..||+
T Consensus 766 ~l~~aa~~IQa~~Rg~l~Rk~~~~~r~-----------------aai~IQ~~~Rg~~aR~~~~~lr~--------~~AAi 820 (1080)
T 2dfs_A 766 KLRAACIRIQKTIRGWLMRKKYMRMRR-----------------AAITIQRYVRGHQARCYATFLRR--------TRAAI 820 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH-----------------HHHHHHHHHHHHHHhhccccccc--------chhHH
Confidence 457899999999999999999999877 47999999999999999887764 34999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHhhcccccchhhhhhhhhhhhHHHhhHhHHHHHHHHHHHHHHhh-
Q 001148 810 KIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRAAIPSGSNFNTLRGCFQSFELSIFLFSVVKLQRWWKNVLLLKL- 888 (1139)
Q Consensus 810 ~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~~~~~iq~lr~~R~~l~R~~~~~~~~AAi~IQ~~~R~~l~rk~- 888 (1139)
+||++||||.+|+.|.+.+.+++.||++|||+++|+.+.. .....+|+.||++||+++.|+.
T Consensus 821 ~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-----------------lr~~~aav~IQ~~~Rg~l~R~~y 883 (1080)
T 2dfs_A 821 IIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-----------------MLREHKSIIIQKHVRGWLARVHY 883 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHTTTHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987611 0112344455555555444432
Q ss_pred --hhhHHHHHHHHHhhHHHHHHHhhccchh
Q 001148 889 --KTKSAIIIQSHIRGWTARRRAYKEKHHI 916 (1139)
Q Consensus 889 --~~~AAi~IQs~~Rg~laRr~~~~~~~Aa 916 (1139)
...|++.||++|||+++|+.+.+++..+
T Consensus 884 ~~~~~aai~iQs~~R~~laRr~~~~Lk~ea 913 (1080)
T 2dfs_A 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEA 913 (1080)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344445555555555555444444433
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.77 E-value=3.8e-17 Score=210.05 Aligned_cols=141 Identities=19% Similarity=0.227 Sum_probs=121.8
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001148 679 AVRKFKSLQAWWQKMAEQNNRSASQRLSSTLQNFSTDKSNINMERAIDVLMLPGNAAKVIKFHFRGWIERRNFLKMRNAA 758 (1139)
Q Consensus 679 ~aRaA~~IQawwR~~~aRk~~~~~~~Aa~~IQ~~~r~k~~~~iqR~~r~l~~~~~AAi~IQs~~Rg~laRr~y~~~R~a~ 758 (1139)
...+|..||++||+|.+|+.|..++.++..||+++|.... |......++..||+.||++||||.+|+.|.+++.+
T Consensus 767 l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~a----R~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~a- 841 (1080)
T 2dfs_A 767 LRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQA----RCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDA- 841 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----hhcccccccchhHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 3458999999999999999999999999999999886433 22212234688999999999999999999998874
Q ss_pred HHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001148 759 RSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHF 838 (1139)
Q Consensus 759 ~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~ 838 (1139)
++.||++|||+++|+.+..++++ .||+.||++||||++|+.|.+...+++.||++|
T Consensus 842 ----------------ai~IQs~~Rg~laRr~~~~lr~~--------~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~ 897 (1080)
T 2dfs_A 842 ----------------TIALQALLRGYLVRNKYQMMLRE--------HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897 (1080)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 79999999999999988877643 499999999999999999999999999999999
Q ss_pred hhHHHHHhhc
Q 001148 839 RSSSHHRAAI 848 (1139)
Q Consensus 839 Rg~laRr~~~ 848 (1139)
||+++|+.+.
T Consensus 898 R~~laRr~~~ 907 (1080)
T 2dfs_A 898 RRMMAKRELK 907 (1080)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999999873
No 17
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-19 Score=176.12 Aligned_cols=88 Identities=22% Similarity=0.380 Sum_probs=81.4
Q ss_pred ccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccc
Q 001148 423 RVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKEL 502 (1139)
Q Consensus 423 ~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~ 502 (1139)
.|+||++||+||++||+|+|.|++++ ..+++.++.+|+|+++||+.||+|++..|++++| |+++||||||+++
T Consensus 39 ~v~dl~~dL~DGv~L~~Lle~L~~~~--l~~~~~~p~~~~~~~eNv~~aL~~~~~~gv~~~~-----i~~~DI~dgn~~~ 111 (129)
T 2yrn_A 39 LIRDLQQDVTDGVLLAQIIQVVANEK--IEDINGCPKNRSQMIENIDACLNFLAAKGINIQG-----LSAEEIRNGNLKA 111 (129)
T ss_dssp CCSCHHHHSSSSHHHHHHHHHHTTCC--CTTCCSSCCSTTHHHHHHHHHHHHHHHHTCCCTT-----CCHHHHHHTCHHH
T ss_pred cchhHHHHcccHHHHHHHHHHHhcCC--cccccCCCCcHHHHHHHHHHHHHHHHHhCCcccC-----CChhhhhcCCHhH
Confidence 48999999999999999999999984 3367667789999999999999999999999999 9999999999999
Q ss_pred hhHHHHHHHHHhhhh
Q 001148 503 ILSLLWNMFVHLQLP 517 (1139)
Q Consensus 503 tLgLLW~li~~fqi~ 517 (1139)
||||||+|+++||..
T Consensus 112 iL~Llw~L~r~~q~~ 126 (129)
T 2yrn_A 112 ILGLFFSLSRYKQQQ 126 (129)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999875
No 18
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=99.73 E-value=7.3e-19 Score=168.85 Aligned_cols=102 Identities=22% Similarity=0.340 Sum_probs=89.1
Q ss_pred ccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHh
Q 001148 545 SALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVF 622 (1139)
Q Consensus 545 ~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF 622 (1139)
.++++.||.|||..+++| |++|+||| ||+||+|||+|||+| +|++++++.+.. .+...+..+||
T Consensus 2 ~s~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~---------~P~lid~~~l~~-----~~~~~n~~~af 67 (109)
T 1bkr_A 2 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH---------RPDLIDFDKLKK-----SNAHYNLQNAF 67 (109)
T ss_dssp CHHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHH---------CGGGCCGGGCCT-----TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHH---------CcCCCCHHHcCc-----CCHHHHHHHHH
Confidence 367899999999999999 79999999 999999999999999 999999877642 34445788899
Q ss_pred hhhHHHHhhhhhhcCcccccc---ccCCCCCCccCCCceecccccCCCC
Q 001148 623 LSSQLIVKKNMDQLNLHKLLG---CNCQSPERRHSNPNCRIVDSEALPD 668 (1139)
Q Consensus 623 ~~s~l~~k~~l~~lgi~~lL~---v~~~~pd~r~~~mtyv~~~~~~~~~ 668 (1139)
..|+ +++||+++|+ ++...||++++ ||||+++|+.|++
T Consensus 68 ~~Ae-------~~lgi~~ll~~eDv~~~~pD~ksi-~tYvs~~~~~f~~ 108 (109)
T 1bkr_A 68 NLAE-------QHLGLTKLLDPEDISVDHPDEKSI-ITYVVTYYHYFSK 108 (109)
T ss_dssp HHHH-------HHHCCCCCCCHHHHSSSSCCHHHH-HHHHHHHHHHHTC
T ss_pred HHHH-------HHcCCCccCCHHHccCCCCcHHHH-HHHHHHHHHHhhc
Confidence 9886 6899999998 67788999998 8999999998874
No 19
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=99.72 E-value=1e-18 Score=170.04 Aligned_cols=105 Identities=22% Similarity=0.329 Sum_probs=89.1
Q ss_pred cccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHH
Q 001148 544 DSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLV 621 (1139)
Q Consensus 544 ~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~la 621 (1139)
..+++++||.|||.++++| |++|+||| ||+||+|||+|||+| +|++++++.+.. .+...+..+|
T Consensus 6 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~---------~P~lid~~~l~~-----~~~~~n~~~a 71 (118)
T 1bhd_A 6 QTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH---------KPDLFSWDKVVK-----MSPIERLEHA 71 (118)
T ss_dssp CSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHH---------CGGGSCHHHHHH-----SCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHH---------CcCcCCHHHhCc-----CCHHHHHHHH
Confidence 4578899999999999999 79999999 999999999999999 999999887753 2334577889
Q ss_pred hhhhHHHHhhhhhhcCcccccc---ccCCCCCCccCCCceecccccCCCCcc
Q 001148 622 FLSSQLIVKKNMDQLNLHKLLG---CNCQSPERRHSNPNCRIVDSEALPDQE 670 (1139)
Q Consensus 622 F~~s~l~~k~~l~~lgi~~lL~---v~~~~pd~r~~~mtyv~~~~~~~~~~~ 670 (1139)
|..|+ +++||+++|+ ++...||++++ ||||+++|+.|++++
T Consensus 72 f~~Ae-------~~lgi~~ll~~eDv~~~~pD~ksv-mtYvs~l~~~~~~~~ 115 (118)
T 1bhd_A 72 FSKAQ-------TYLGIEKLLDPEDVAVRLPDKKSI-IMYLTSLFEVLPQQV 115 (118)
T ss_dssp HHHHH-------HHHCCCCCSCHHHHHTSCCCHHHH-HHHHHHHHHHC----
T ss_pred HHHHH-------HHcCCCcccCHHHhhcCCCcHHHH-HHHHHHHHHHCcCCC
Confidence 99886 6899999998 66788999998 899999999998643
No 20
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-18 Score=169.80 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=90.5
Q ss_pred cccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHH
Q 001148 544 DSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLV 621 (1139)
Q Consensus 544 ~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~la 621 (1139)
..++++.||.|||.++++| |++|+||| ||+||+|||+|||+| +|++++++.+.. .+.-.+..+|
T Consensus 5 ~~s~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~---------~P~lid~~~l~~-----~~~~~n~~~a 70 (127)
T 1wyq_A 5 SSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKH---------RPDLLDFESLKK-----CNAHYNLQNA 70 (127)
T ss_dssp CCCSTHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHH---------CTTTCCTTTSCS-----SCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHH---------CcCcCCHHHhCc-----CCHHHHHHHH
Confidence 4577899999999999999 79999998 999999999999999 999998877642 3444578889
Q ss_pred hhhhHHHHhhhhhhcCcccccc---ccCCCCCCccCCCceecccccCCCCc
Q 001148 622 FLSSQLIVKKNMDQLNLHKLLG---CNCQSPERRHSNPNCRIVDSEALPDQ 669 (1139)
Q Consensus 622 F~~s~l~~k~~l~~lgi~~lL~---v~~~~pd~r~~~mtyv~~~~~~~~~~ 669 (1139)
|..|+ +++||+++|+ ++...||++++ ||||+.+|+.|+..
T Consensus 71 f~~Ae-------~~Lgi~~ll~~eDv~~~~pDeksi-mtYvs~l~~~~~~~ 113 (127)
T 1wyq_A 71 FNLAE-------KELGLTKLLDPEDVNVDQPDEKSI-ITYVATYYHYFSKM 113 (127)
T ss_dssp HHHHH-------HTTCCCCCSCTTTSCSSSCCHHHH-HHHHHHHHHHHHHS
T ss_pred HHHHH-------HHcCCCcccCHHHhccCCCcHHHH-HHHHHHHHHHhhcC
Confidence 99886 7899999998 56678999998 89999999999853
No 21
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=99.69 E-value=6.2e-18 Score=164.19 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=88.6
Q ss_pred cccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHH
Q 001148 544 DSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLV 621 (1139)
Q Consensus 544 ~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~la 621 (1139)
..++++.||.|||.++++| |++|+||| ||+||+|||+|||+| +|++++++.+.. ++.-.+..+|
T Consensus 5 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~---------~P~lid~~~l~~-----~~~~~n~~~a 70 (116)
T 1wyl_A 5 SSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRL---------QPGLLEPSELQG-----LGALEATAWA 70 (116)
T ss_dssp CSSSHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHH---------CTTSCCCSSGGG-----CCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH---------CcCCCCHHHhcc-----CCHHHHHHHH
Confidence 4577899999999999999 89999998 999999999999999 899998877643 3444578889
Q ss_pred hhhhHHHHhhhhhhcCcccccc---ccCCCCCCccCCCceecccccCCCCcc
Q 001148 622 FLSSQLIVKKNMDQLNLHKLLG---CNCQSPERRHSNPNCRIVDSEALPDQE 670 (1139)
Q Consensus 622 F~~s~l~~k~~l~~lgi~~lL~---v~~~~pd~r~~~mtyv~~~~~~~~~~~ 670 (1139)
|..|+ +++||+++|+ +... ||++++ ||||+++|+.|+++.
T Consensus 71 f~~Ae-------~~lgi~~lL~peD~~~~-~d~ksv-~tYvs~l~~~~~~~~ 113 (116)
T 1wyl_A 71 LKVAE-------NELGITPVVSAQAVVAG-SDPLGL-IAYLSHFHSAFKSGP 113 (116)
T ss_dssp HHHHH-------HTTCCCCCSCHHHHHHT-SCHHHH-HHHHHHHHHHSCCSC
T ss_pred HHHHH-------HHcCCccccCHHHHhcC-CchhHH-HHHHHHHHHHccCCC
Confidence 99886 6799999998 3333 899887 899999999998743
No 22
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=99.68 E-value=5.8e-18 Score=166.96 Aligned_cols=103 Identities=19% Similarity=0.320 Sum_probs=89.9
Q ss_pred cccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHH
Q 001148 544 DSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLV 621 (1139)
Q Consensus 544 ~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~la 621 (1139)
..++++.||.|||.+++.| |++|+||| ||+||+|||+|||+| +|++++++.+. +++...+..+|
T Consensus 5 ~~~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~---------~P~lid~~~l~-----~~~~~~n~~~a 70 (128)
T 2d87_A 5 SSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNF---------FPEAFDYGQLS-----PQNRRQNFEVA 70 (128)
T ss_dssp SCCHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHH---------CTTTSCSTTSC-----SSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH---------CcCcCCHHHcC-----ccCHHHHHHHH
Confidence 5678999999999999999 89999998 999999999999999 89999887663 23444578889
Q ss_pred hhhhHHHHhhhhhhcCcccccc----ccCCCCCCccCCCceecccccCCCC
Q 001148 622 FLSSQLIVKKNMDQLNLHKLLG----CNCQSPERRHSNPNCRIVDSEALPD 668 (1139)
Q Consensus 622 F~~s~l~~k~~l~~lgi~~lL~----v~~~~pd~r~~~mtyv~~~~~~~~~ 668 (1139)
|..|+ +++||+++|+ +++..||++++ ||||+.+|+.|+.
T Consensus 71 f~~Ae-------~~lgip~lL~peD~v~~~~pD~ksv-mtYvs~l~~~~~~ 113 (128)
T 2d87_A 71 FSSAE-------THADCPQLLDTEDMVRLREPDWKCV-YTYIQEFYRCLVQ 113 (128)
T ss_dssp HHHHH-------HHHCCCCCSCHHHHHHSSSCCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHH-------HcCCCCcccCHHHHhccCCccHHHH-HHHHHHHHHHHhh
Confidence 99986 6799999998 47788999998 8999999999874
No 23
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.6e-18 Score=164.25 Aligned_cols=105 Identities=13% Similarity=0.220 Sum_probs=89.8
Q ss_pred cccccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHH
Q 001148 542 IFDSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVIL 619 (1139)
Q Consensus 542 ~~~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~ 619 (1139)
....++++.||.|||..++.| +++|+||| ||+||+|||+|||+| +|++++++.+.. ++...+..
T Consensus 5 ~~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~---------~P~lid~~~l~~-----~~~~~n~~ 70 (119)
T 2d89_A 5 SSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHF---------RPDLIDYKSLNP-----QDIKENNK 70 (119)
T ss_dssp SSCCCCHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHH---------CTTTSCGGGCCT-----TCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH---------CcCcCChhhhcc-----cCHHHHHH
Confidence 345678999999999999999 89999999 999999999999999 899998876642 34445777
Q ss_pred HHhhhhHHHHhhhhhhcCcccccc----ccCCCCCCccCCCceecccccCCCCc
Q 001148 620 LVFLSSQLIVKKNMDQLNLHKLLG----CNCQSPERRHSNPNCRIVDSEALPDQ 669 (1139)
Q Consensus 620 laF~~s~l~~k~~l~~lgi~~lL~----v~~~~pd~r~~~mtyv~~~~~~~~~~ 669 (1139)
+||..+ +++||+++|+ +++..||++++ ||||+++|++|+..
T Consensus 71 ~af~~a--------~~LGi~~ll~peDi~~~~~pD~ksv-mtYvs~l~~~f~~~ 115 (119)
T 2d89_A 71 KAYDGF--------ASIGISRLLEPSDMVLLAIPDKLTV-MTYLYQIRAHFSSG 115 (119)
T ss_dssp HHHHHH--------HHHTCCCCSCHHHHHHSSSCCHHHH-HHHHHHHHHHHSCC
T ss_pred HHHHHH--------HHhCCCcccCHHHHhccCCCcHHHH-HHHHHHHHHHccCC
Confidence 888875 5799999998 45778999998 89999999999864
No 24
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=99.67 E-value=4.4e-18 Score=166.37 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=90.0
Q ss_pred ccccHHHHHHHHHHHHHccC-CceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHH
Q 001148 543 FDSALLDLLLNWIQVICEKY-DFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILL 620 (1139)
Q Consensus 543 ~~~~~~~~LL~W~q~v~~~y-gv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~l 620 (1139)
+..++++.||.|||.++++| |++|+||| ||+||+|||+|||+| +|++++++.+.. ++...+..+
T Consensus 6 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~---------~P~lid~~~l~~-----~~~~~n~~~ 71 (121)
T 2d88_A 6 SGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRY---------RPDLIDFDSLDE-----QNVEKNNQL 71 (121)
T ss_dssp CSCSSSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHH---------CTTTSCTTTSCT-----TCHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHh---------CcCcCCHHHcCc-----cCHHHHHHH
Confidence 34566789999999999999 89999999 999999999999999 899998876642 344457888
Q ss_pred HhhhhHHHHhhhhhhcCcccccc----ccCCCCCCccCCCceecccccCCCCc
Q 001148 621 VFLSSQLIVKKNMDQLNLHKLLG----CNCQSPERRHSNPNCRIVDSEALPDQ 669 (1139)
Q Consensus 621 aF~~s~l~~k~~l~~lgi~~lL~----v~~~~pd~r~~~mtyv~~~~~~~~~~ 669 (1139)
||..|+ +++||+++|+ +++..||++++ ||||+.+|+.|++.
T Consensus 72 af~~Ae-------~~lgi~~lL~peD~~~~~~pD~ksi-mtYvs~l~~~~~~~ 116 (121)
T 2d88_A 72 AFDIAE-------KELGISPIMTGKEMASVGEPDKLSM-VMYLTQFYEMFKDS 116 (121)
T ss_dssp HHHHHH-------HHTCCCCSSCHHHHHHSSCCCHHHH-HHHHHHHHHHHSSC
T ss_pred HHHHHH-------HHcCCCCcCCHHHHhccCCCcHHHH-HHHHHHHHHHcccC
Confidence 999886 6799999998 34688999998 89999999999863
No 25
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.88 E-value=3.2e-09 Score=90.26 Aligned_cols=52 Identities=29% Similarity=0.440 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001148 730 LPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKASIMCQEK 798 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~~lr~er 798 (1139)
+++.||+.||++||||++|+.|..++.+ |+.||++||||++|+.+..+++++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~a-----------------ai~IQ~~~Rg~~aR~~~~~~r~~~ 54 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRA-----------------AITVQRYVRGYQARCYAKFLRRTK 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3578999999999999999999998874 799999999999999998887544
No 26
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=98.85 E-value=1.3e-09 Score=106.42 Aligned_cols=86 Identities=8% Similarity=0.186 Sum_probs=72.8
Q ss_pred cccchhH-HHhhhHHHHHHHHHHhcCCCccccccccCCC-CchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 422 FRVTNLF-VDLQDGVRLGRIVQLLLQDSSILTKIVVPSD-THRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 422 ~~V~nL~-~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~-~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
..|+|+. .|++||+.++.|++.+.++.. -..+-.++. ++.++.+|++.|+++.+..|+.. . +.|||||+|+
T Consensus 27 ~~I~~F~d~sl~dG~~~l~Ll~~i~P~~v-d~~lv~~~~L~~~d~~~Na~~ais~ArklG~~~-~-----l~pEDIve~~ 99 (124)
T 1wjo_A 27 TSIQSFKDKTISSSLAVVDLIDAIQPGCI-NYDLVKSGNLTEDDKHNNAKYAVSMARRIGARV-Y-----ALPEDLVEVK 99 (124)
T ss_dssp CCCSCTTCTTGGGTHHHHHHHHHHSTTSC-CTTTSCCSSCCHHHHHHHHHHHHHHHHHTCCSC-C-----CCHHHHHHTC
T ss_pred cccCCCCcchhhhhHHHHHHHHHHCcCcc-CHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc-c-----cCHHHHhcCc
Confidence 3699999 999999999999999998732 122223333 78899999999999999999986 4 8999999999
Q ss_pred ccchhHHHHHHHHHh
Q 001148 500 KELILSLLWNMFVHL 514 (1139)
Q Consensus 500 ~k~tLgLLW~li~~f 514 (1139)
++++|+++|+||.++
T Consensus 100 pK~ilt~va~l~~~~ 114 (124)
T 1wjo_A 100 PKMVMTVFACLMGRG 114 (124)
T ss_dssp TTTTTHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHH
Confidence 999999999999763
No 27
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=98.80 E-value=1.7e-09 Score=105.50 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHccCC--ceecCCC--CCCchhhHHHHHHhhccCCCCCCCccccccchhhhhcCCCCCCchhHHHHHhh
Q 001148 548 LDLLLNWIQVICEKYD--FRINNFS--SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMSDILEHNGACSDKSVVILLVFL 623 (1139)
Q Consensus 548 ~~~LL~W~q~v~~~yg--v~V~NFt--S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~dl~~~~~~~ddk~~~~~laF~ 623 (1139)
++.|++|||..++.+| +.|+||+ ||+||.+||+|||.+ .|+.++++.+....-..+|+-.|..+||.
T Consensus 9 d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i---------~P~~vd~~lv~~~~L~~~d~~~Na~~ais 79 (124)
T 1wjo_A 9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAI---------QPGCINYDLVKSGNLTEDDKHNNAKYAVS 79 (124)
T ss_dssp CHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHH---------STTSCCTTTSCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHH---------CcCccCHHHhcCCCCCHHHHHHHHHHHHH
Confidence 5789999999998654 5899997 999999999999999 88888887543221123445467888888
Q ss_pred hhHHHHhhhhhhcCcccccc----ccCCCCCCccCCCceecccccCC
Q 001148 624 SSQLIVKKNMDQLNLHKLLG----CNCQSPERRHSNPNCRIVDSEAL 666 (1139)
Q Consensus 624 ~s~l~~k~~l~~lgi~~lL~----v~~~~pd~r~~~mtyv~~~~~~~ 666 (1139)
.+ +++|++.++. |++ +.|.+ ||||+.+++..
T Consensus 80 ~A--------rklG~~~~l~pEDIve~---~pK~i-lt~va~l~~~~ 114 (124)
T 1wjo_A 80 MA--------RRIGARVYALPEDLVEV---KPKMV-MTVFACLMGRG 114 (124)
T ss_dssp HH--------HHTCCSCCCCHHHHHHT---CTTTT-THHHHHHHHHS
T ss_pred HH--------HHcCCCcccCHHHHhcC---cchhh-HHHHHHHHHHH
Confidence 88 4699998876 455 33665 89998877644
No 28
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.63 E-value=5.3e-08 Score=79.47 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHhhh
Q 001148 774 GATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRSL 824 (1139)
Q Consensus 774 AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi~IQ~~~Rg~laRr~y 824 (1139)
+++.||++|||+++|+.+..++.+ .||++||+.||||.+|+.|
T Consensus 5 a~i~iQ~~~Rg~l~R~~~~~~~~~--------~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 5 AIKYLQNNIKGFIIRQRVNDEMKV--------NCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHhh
Confidence 455556666666655555554432 2566666666666655544
No 29
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.62 E-value=3.9e-08 Score=83.50 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhccchhHhhHHHHhhhHHHHHHHH
Q 001148 889 KTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKASSC 934 (1139)
Q Consensus 889 ~~~AAi~IQs~~Rg~laRr~~~~~~~Aai~IQa~wRg~~aRK~~~~ 934 (1139)
.+.||+.||++||||++|+.|...+.+++.||++||||.+|+.+..
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999874
No 30
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.61 E-value=8.5e-08 Score=78.23 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 001148 731 PGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKA 791 (1139)
Q Consensus 731 ~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~ 791 (1139)
+..+|+.||++||||++|+.|..++.. .||+.||++||||.+|+.+
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~---------------~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEMKV---------------NCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhHHHHHhh
Confidence 356899999999999999999987763 4799999999999999865
No 31
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.10 E-value=5.7e-06 Score=84.42 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=83.8
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchh
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELIL 504 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tL 504 (1139)
.|+..-|+||++||+|++.+.+++ ..+++.++..-++.++|++.-|++++..|++-++ ...+.|+++|.-
T Consensus 32 ~~l~~~LkdGvvLCkL~N~l~P~~--i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~----lF~~~DL~e~kn---- 101 (159)
T 1p2x_A 32 STFEQSLRNGVVLALLVQKFQPDK--LIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIF----HFELTDIYEGKN---- 101 (159)
T ss_dssp GGHHHHTTTSHHHHHHHHHHCTTS--CCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGG----CCCHHHHSSCSC----
T ss_pred HHHHHHHcchHHHHHHHHHhCCCC--ccccccccCCcchHHHHHHHHHHHHHHcCCCccc----ccCHHHHHhcCC----
Confidence 489999999999999999999874 4677666677899999999999999999998776 138999999864
Q ss_pred HHHHHHHHHh-hhhhhhcccchhhHHHhhccCCCCccccccccHHHHHHHHHHHHHccCCceecCCC
Q 001148 505 SLLWNMFVHL-QLPLMINKKHLTEEICKIRGTNMDNLNIFDSALLDLLLNWIQVICEKYDFRINNFS 570 (1139)
Q Consensus 505 gLLW~li~~f-qi~~l~d~~~l~~Ei~~l~~~~~~~~~~~~~~~~~~LL~W~q~v~~~ygv~V~NFt 570 (1139)
+|+++... .+............+. +....-.-+.++ |+|++...+.+|+.+.||+
T Consensus 102 --~~~Vi~~L~aL~~~~~~~g~~p~~~-------~~~~~~~fseeq--l~~~~~~l~~~g~~~~~f~ 157 (159)
T 1p2x_A 102 --LPKVIYCIHALSYFLSMQDLAPPLI-------KSDENLSFTDED--VSIIVRRLRQSNVILPNFK 157 (159)
T ss_dssp --HHHHHHHHHHHHHHHHTTTSSCCCC-------CCCTTCCCCHHH--HHHHHHHHHHCCCCCCCGG
T ss_pred --HHHHHHHHHHHHHHHhhCCCCCCch-------hhhccCCCCHHH--HHHHHHHHHHcCCCCCCcC
Confidence 22222210 1111110000000000 000001123334 8999999999999999996
No 32
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.88 E-value=3.3e-05 Score=81.77 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=61.1
Q ss_pred cchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCc
Q 001148 424 VTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 424 V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
..|+++.|+||++||+|++.|.+++ ..+++.++..-++.++||+..|++++..|++-++ .+.+.|+++|.-
T Consensus 75 ~~~f~~~LrDGvvLCkLiN~l~P~s--v~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~~~----lF~t~DL~e~kn 145 (203)
T 1p5s_A 75 TSTFEQSLRNGVVLALLVQKFQPDK--LIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIF----HFELTDIYEGKN 145 (203)
T ss_dssp GGGHHHHHTTSHHHHHHHHHHCTTS--CCCCCCCSSSCCCHHHHHHHHHHHHHHTTCCGGG----CCCHHHHHSCSC
T ss_pred hHHHHHHHcchHHHHHHHHHhCCCC--cccccCCCCCcchHHHHHHHHHHHHHHcCCCccc----ccCHHHHHhcCC
Confidence 4589999999999999999999874 4677666677889999999999999999998877 148999999874
No 33
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=2.4e-05 Score=76.01 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=71.7
Q ss_pred cccccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccc
Q 001148 413 QQCLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIM 491 (1139)
Q Consensus 413 ~Q~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~ 491 (1139)
.|..+..| +..|+|.-+|++||..+|.|+..+.++.. .......-..++|.+.|++..++.||+-. +.
T Consensus 18 ~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~li-----d~~~l~~~~~~~n~~~af~~a~~LGi~~l------l~ 86 (119)
T 2d89_A 18 CKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLI-----DYKSLNPQDIKENNKKAYDGFASIGISRL------LE 86 (119)
T ss_dssp HHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTS-----CGGGCCTTCSHHHHHHHHHHHHHHTCCCC------SC
T ss_pred HHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcC-----ChhhhcccCHHHHHHHHHHHHHHhCCCcc------cC
Confidence 34455555 56899999999999999999999988721 12222334678999999999888898754 78
Q ss_pred cccccCC---CccchhHHHHHHHHHhh
Q 001148 492 EDDVANG---DKELILSLLWNMFVHLQ 515 (1139)
Q Consensus 492 a~DIVdG---~~k~tLgLLW~li~~fq 515 (1139)
|+||+++ +.+.++..+=+++.+|.
T Consensus 87 peDi~~~~~pD~ksvmtYvs~l~~~f~ 113 (119)
T 2d89_A 87 PSDMVLLAIPDKLTVMTYLYQIRAHFS 113 (119)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHcc
Confidence 9999987 77888888888877763
No 34
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=97.52 E-value=4.2e-05 Score=74.02 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=71.8
Q ss_pred cccccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCcc
Q 001148 413 QQCLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAI 490 (1139)
Q Consensus 413 ~Q~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I 490 (1139)
.|..+..| +..|+|.-+|++||..+|.|+..+.++- +.......-...+|++.|++..++ -||+-. +
T Consensus 16 ~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~l-----id~~~l~~~~~~~n~~~af~~Ae~~lgi~~l------L 84 (116)
T 1wyl_A 16 CQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGL-----LEPSELQGLGALEATAWALKVAENELGITPV------V 84 (116)
T ss_dssp HHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTS-----CCCSSGGGCCHHHHHHHHHHHHHHTTCCCCC------S
T ss_pred HHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCC-----CCHHHhccCCHHHHHHHHHHHHHHHcCCccc------c
Confidence 34455555 5689999999999999999999998772 122233345789999999999987 898754 7
Q ss_pred ccccccCC-CccchhHHHHHHHHHhh
Q 001148 491 MEDDVANG-DKELILSLLWNMFVHLQ 515 (1139)
Q Consensus 491 ~a~DIVdG-~~k~tLgLLW~li~~fq 515 (1139)
.++||+++ +.+.++..+=+++..|.
T Consensus 85 ~peD~~~~~d~ksv~tYvs~l~~~~~ 110 (116)
T 1wyl_A 85 SAQAVVAGSDPLGLIAYLSHFHSAFK 110 (116)
T ss_dssp CHHHHHHTSCHHHHHHHHHHHHHHSC
T ss_pred CHHHHhcCCchhHHHHHHHHHHHHcc
Confidence 89999999 88888888877776663
No 35
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=97.52 E-value=6.3e-05 Score=73.31 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=73.5
Q ss_pred eccccccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCC
Q 001148 411 SYQQCLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGT 488 (1139)
Q Consensus 411 ~~~Q~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~ 488 (1139)
.|.|..+..| +..|+|.-+|++||..+|.|+..+.++. +.......-...+|++.|++..++ -||+-.
T Consensus 16 ~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~l-----id~~~l~~~~~~~n~~~af~~Ae~~lgi~~l----- 85 (121)
T 2d88_A 16 GWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDL-----IDFDSLDEQNVEKNNQLAFDIAEKELGISPI----- 85 (121)
T ss_dssp HHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTT-----SCTTTSCTTCHHHHHHHHHHHHHHHTCCCCS-----
T ss_pred HHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCc-----CCHHHcCccCHHHHHHHHHHHHHHHcCCCCc-----
Confidence 3456666666 6789999999999999999999998772 122333445789999999999984 899754
Q ss_pred ccccccccCC---CccchhHHHHHHHHHhh
Q 001148 489 AIMEDDVANG---DKELILSLLWNMFVHLQ 515 (1139)
Q Consensus 489 ~I~a~DIVdG---~~k~tLgLLW~li~~fq 515 (1139)
+.++||++| +.+.++..+=+++..|.
T Consensus 86 -L~peD~~~~~~pD~ksimtYvs~l~~~~~ 114 (121)
T 2d88_A 86 -MTGKEMASVGEPDKLSMVMYLTQFYEMFK 114 (121)
T ss_dssp -SCHHHHHHSSCCCHHHHHHHHHHHHHHHS
T ss_pred -CCHHHHhccCCCcHHHHHHHHHHHHHHcc
Confidence 789999986 77888888877776663
No 36
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=97.51 E-value=6.7e-05 Score=73.86 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=73.6
Q ss_pred ccccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccc
Q 001148 414 QCLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIM 491 (1139)
Q Consensus 414 Q~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~ 491 (1139)
|..+..| +..|+|.-+|++||..+|.|+..+.++- +.......-..++|++.|++..++ -||+-. +.
T Consensus 17 q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~l-----id~~~l~~~~~~~n~~~af~~Ae~~lgip~l------L~ 85 (128)
T 2d87_A 17 RAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEA-----FDYGQLSPQNRRQNFEVAFSSAETHADCPQL------LD 85 (128)
T ss_dssp HHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTT-----SCSTTSCSSCHHHHHHHHHHHHHHHHCCCCC------SC
T ss_pred HHHhccCCCCCCCCccccccccHHHHHHHHHHCcCc-----CCHHHcCccCHHHHHHHHHHHHHHcCCCCcc------cC
Confidence 4455556 5689999999999999999999998772 122333445789999999999987 588644 78
Q ss_pred cccccCCC---ccchhHHHHHHHHHhhhhhh
Q 001148 492 EDDVANGD---KELILSLLWNMFVHLQLPLM 519 (1139)
Q Consensus 492 a~DIVdG~---~k~tLgLLW~li~~fqi~~l 519 (1139)
++|||+++ .+.++..+=+++..|.-.++
T Consensus 86 peD~v~~~~pD~ksvmtYvs~l~~~~~~~~~ 116 (128)
T 2d87_A 86 TEDMVRLREPDWKCVYTYIQEFYRCLVQKGL 116 (128)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHHhhccc
Confidence 99999987 68888888888877754443
No 37
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=97.40 E-value=4.9e-05 Score=84.13 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=66.0
Q ss_pred cchhHHHhhhHHHHHHHHHHhcCCCcccc----ccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 424 VTNLFVDLQDGVRLGRIVQLLLQDSSILT----KIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 424 V~nL~~DLrDGv~L~rLlElL~~~~~~~~----kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
|+|+-+|++||+.++.|+..+.++..... .+...+.+.-.+.+|++.|++.+++-||+.. +.|+|||+|+
T Consensus 189 I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi~~~------l~peDi~~~~ 262 (275)
T 1aoa_A 189 INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQF------VTPADVVSGN 262 (275)
T ss_dssp CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTCCCS------CCHHHHHTTC
T ss_pred chhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCCCCc------CCHHHcCCCC
Confidence 89999999999999999999998732111 1233444556889999999999998888643 8999999999
Q ss_pred ccchhHHHHHHH
Q 001148 500 KELILSLLWNMF 511 (1139)
Q Consensus 500 ~k~tLgLLW~li 511 (1139)
++.+|.++-+|+
T Consensus 263 ~k~i~tyva~Lf 274 (275)
T 1aoa_A 263 PKLNLAFVANLF 274 (275)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh
Confidence 999999887765
No 38
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=97.31 E-value=0.00014 Score=69.39 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=57.1
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
.|++..|+||+.||+|++.+.+++ ..+++.+ .+.++.++|++..|++++..|++-++ .+.+.|+++|.
T Consensus 22 ~~l~~~L~dGvvLCkL~N~l~P~~--v~ki~~~-~~~f~~~eNI~~Fl~a~~~~Gv~~~~----lF~~~DL~e~k 89 (108)
T 1h67_A 22 DNFMDGLKDGVILCELINKLQPGS--VQKVNDP-VQNWHKLENIGNFLRAIKHYGVKPHD----IFEANDLFENT 89 (108)
T ss_dssp SCHHHHHHHCSHHHHHHHHHSTTS--STTCCCT-TSSHHHHHHHHHHHHHHHHHTSCGGG----SCCHHHHHHTC
T ss_pred HHHHHHHccHHHHHHHHHHhCCCC--ccccccc-ccchHHHHHHHHHHHHHHHcCCCccc----ccChhHHHhCC
Confidence 488999999999999999999874 3455543 46789999999999999999998765 27899999875
No 39
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=97.21 E-value=0.00018 Score=68.77 Aligned_cols=89 Identities=11% Similarity=0.183 Sum_probs=66.4
Q ss_pred cccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHH-HcCCcccCCCCCcccc
Q 001148 415 CLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLR-QAGVKLYDEDGTAIME 492 (1139)
Q Consensus 415 ~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk-~~gi~l~~~~g~~I~a 492 (1139)
..+..| +..|+|.-+|++||..+|.|+..+.++.. .......-...+|++.|++..+ .-||+-. +.+
T Consensus 14 ~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~li-----d~~~l~~~~~~~n~~~af~~Ae~~lgi~~l------l~~ 82 (109)
T 1bkr_A 14 MKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI-----DFDKLKKSNAHYNLQNAFNLAEQHLGLTKL------LDP 82 (109)
T ss_dssp HHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGC-----CGGGCCTTCHHHHHHHHHHHHHHHHCCCCC------CCH
T ss_pred HHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCC-----CHHHcCcCCHHHHHHHHHHHHHHHcCCCcc------CCH
Confidence 334444 46799999999999999999999987721 2222334567999999999997 6899754 789
Q ss_pred ccccCCCc--cchhHHHHHHHHHh
Q 001148 493 DDVANGDK--ELILSLLWNMFVHL 514 (1139)
Q Consensus 493 ~DIVdG~~--k~tLgLLW~li~~f 514 (1139)
+||+.|++ +.++..+=++...|
T Consensus 83 eDv~~~~pD~ksi~tYvs~~~~~f 106 (109)
T 1bkr_A 83 EDISVDHPDEKSIITYVVTYYHYF 106 (109)
T ss_dssp HHHSSSSCCHHHHHHHHHHHHHHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHh
Confidence 99998886 56666666665544
No 40
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.17 E-value=0.00029 Score=70.89 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=57.4
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
.|++..|+||++||+|++.+.+++ ..+++.+ ...++.++|++..|++++..|++-++ .+.+.|+++|.
T Consensus 36 ~~l~~~L~DGvvLCkL~N~l~P~~--v~kin~~-~~~f~~~eNI~~FL~a~~~~Gv~~~~----lF~~~DL~e~k 103 (146)
T 1wyn_A 36 PDFQKGLKDGTILCTLMNKLQPGS--VPKINRS-MQNWHQLENLSNFIKAMVSYGMNPVD----LFEANDLFESG 103 (146)
T ss_dssp SCHHHHHHTTSHHHHHHHHHCTTS--CSCCCCS-SCHHHHHHHHHHHHHHHHHHTCCSSS----CCCHHHHHTCS
T ss_pred HHHHHHHccHHHHHHHHHHhCCCC--ccccccc-cccccHHHHHHHHHHHHHHcCCCccc----ccChhHHHhcC
Confidence 489999999999999999999874 3566543 46789999999999999999998765 37899999975
No 41
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.17 E-value=0.0003 Score=69.92 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=57.2
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
.|++..|+||+.||+|++.+.+++ ..+++.+ .+.++.++|++.-|++++..|++-++ .+.+.|+++|.
T Consensus 36 ~~l~~~L~DGvvLCkL~N~l~P~~--v~ki~~~-~~~f~~~eNI~~Fl~a~~~~Gv~~~~----lF~~~DL~e~k 103 (136)
T 1wyp_A 36 NNFMDGLKDGIILCEFINKLQPGS--VKKINES-TQNWHQLENIGNFIKAITKYGVKPHD----IFEANDLFENT 103 (136)
T ss_dssp SCTTHHHHTSHHHHHHHHHHSTTS--SSCCCCS-SCSHHHHHHHHHHHHHHHHHTCCGGG----CCCHHHHHSCS
T ss_pred HHHHHHHccHHhHHHHHHhhCCCC--ccccccc-ccchHHHHHHHHHHHHHHHcCCCccc----ccCchHHhcCC
Confidence 478999999999999999999874 3566543 46789999999999999999998765 27899999975
No 42
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.09 E-value=0.00048 Score=67.09 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=54.8
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCC
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
+.|+..|+||++||+|++.+.+++ ..+++..+..-++.++|++..|++++..|+. . +.+.|+++|.
T Consensus 33 ~~l~~~L~dGvvLCkL~N~l~Pg~--i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~~--~-----F~~~DL~e~k 98 (121)
T 1wyr_A 33 EFLKSSLKNGVVLCKLINRLMPGS--VEKFCLDPQTEADCINNINDFLKGCATLQVE--I-----FDPDDLYSGV 98 (121)
T ss_dssp HHHHHHHHHSHHHHHHHHHHSTTC--CSCCCSSCCSHHHHHHHHHHHHHHHHHHTCC--C-----CCHHHHHTCS
T ss_pred HHHHHHHccHHHHHHHHHHhCCCC--CCcCCCCCcchHHHHHHHHHHHHHHHHcCCC--c-----cCHHHHHcCC
Confidence 347899999999999999999874 3466555566789999999999999998863 2 7899999984
No 43
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=97.06 E-value=0.0003 Score=69.06 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=67.4
Q ss_pred ccccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHH-HcCCcccCCCCCccc
Q 001148 414 QCLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLR-QAGVKLYDEDGTAIM 491 (1139)
Q Consensus 414 Q~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk-~~gi~l~~~~g~~I~ 491 (1139)
|..+..| +..|+|+-+|++||..+|.|+..+.++- +.......-...+|++.|++..+ ..||+-. +.
T Consensus 17 q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~l-----id~~~l~~~~~~~n~~~af~~Ae~~Lgi~~l------l~ 85 (127)
T 1wyq_A 17 QMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDL-----LDFESLKKCNAHYNLQNAFNLAEKELGLTKL------LD 85 (127)
T ss_dssp HHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTT-----CCTTTSCSSCCHHHHHHHHHHHHHTTCCCCC------SC
T ss_pred HHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCc-----CCHHHhCcCCHHHHHHHHHHHHHHHcCCCcc------cC
Confidence 3344444 4689999999999999999999998872 12233334567899999999998 5788744 78
Q ss_pred cccccCCCc--cchhHHHHHHHHHh
Q 001148 492 EDDVANGDK--ELILSLLWNMFVHL 514 (1139)
Q Consensus 492 a~DIVdG~~--k~tLgLLW~li~~f 514 (1139)
++||+.+++ +.++..+=+++.+|
T Consensus 86 ~eDv~~~~pDeksimtYvs~l~~~~ 110 (127)
T 1wyq_A 86 PEDVNVDQPDEKSIITYVATYYHYF 110 (127)
T ss_dssp TTTSCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHh
Confidence 999998886 56777776666665
No 44
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=96.97 E-value=0.00074 Score=67.73 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=58.1
Q ss_pred ccchhHHHhhhHHHHHHHHHHhcCCC-cccc-ccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCc
Q 001148 423 RVTNLFVDLQDGVRLGRIVQLLLQDS-SILT-KIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 423 ~V~nL~~DLrDGv~L~rLlElL~~~~-~~~~-kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
...|+++-|+||++||+|++.+.+.. .... +++ ++..-++.++|++.-|++++..|++-++ ...+.|+++|.-
T Consensus 32 ~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin-~~~~~f~~~eNI~~FL~ac~~~Gv~~~~----lF~t~DL~e~kn 106 (144)
T 1ujo_A 32 GRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN-PPSMVFKQMEQVAQFLKAAEDYGVIKTD----MFQTVDLYEGKD 106 (144)
T ss_dssp SSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSS-CCCSHHHHHHHHHHHHHHHHHHTCCSSS----CCCHHHHHTCSC
T ss_pred cHHHHHHHHcchHHHHHHHHHhCcccCCCcceeec-CCCchhHHHHHHHHHHHHHHHcCcCccc----cCChhHHHhcCC
Confidence 34689999999999999999999831 1223 554 3456789999999999999999998776 138999999863
No 45
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.97 E-value=0.0016 Score=56.23 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHH
Q 001148 732 GNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEID 789 (1139)
Q Consensus 732 ~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr 789 (1139)
...++.||+.+|||++|+.|.++... ..|+.+||+.+|+|..++
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~--------------~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQ--------------RIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhc
Confidence 45566777777777777777766442 234556666666666654
No 46
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.92 E-value=0.0012 Score=56.86 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHH
Q 001148 733 NAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEID 789 (1139)
Q Consensus 733 ~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr 789 (1139)
..++.||+..|||++|+.|.++... ..|+.+||+.+|+|..++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~--------------~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREK--------------SVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhc
Confidence 4556666667777776666665442 234456666666666543
No 47
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.00085 Score=68.10 Aligned_cols=70 Identities=24% Similarity=0.224 Sum_probs=58.2
Q ss_pred cchhHHHhhhHHHHHHHHHHhcC---CCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCc
Q 001148 424 VTNLFVDLQDGVRLGRIVQLLLQ---DSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 424 V~nL~~DLrDGv~L~rLlElL~~---~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
..|++.-|+||++||+|++.+.+ ++ ..+++. +.+.++.++||+.-|++++..|++-++ ...+.|+++|.-
T Consensus 41 ~~~~~~~LkDGvvLCkL~N~l~P~~~~~--i~kIn~-~~~~F~~~eNI~~FL~ac~~~Gv~~~~----lF~t~DL~e~kn 113 (155)
T 1wym_A 41 RENFQNWLKDGTVLCELINALYPEGQAP--VKKIQA-STMAFKQMEQISQFLQAAERYGINTTD----IFQTVDLWEGKN 113 (155)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHSCTTTCS--CCCCCC-CCCHHHHHHHHHHHHHHHHHHTCCTTT----CCCHHHHHTCSC
T ss_pred HHHHHHHHcchHHHHHHHHHhccccCCC--cCcccC-CCccccHHHHHHHHHHHHHHcCCCccc----cCChHHHHhcCC
Confidence 36899999999999999999998 53 346654 356789999999999999999998776 138999999863
No 48
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.88 E-value=0.0011 Score=83.67 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHhhHHHHHhh
Q 001148 804 GIKAALKIQSSWRNFIASRSLQKN---YFAATMIQSHFRSSSHHRAA 847 (1139)
Q Consensus 804 ~~~AAi~IQ~~~Rg~laRr~y~r~---r~AAi~IQs~~Rg~laRr~~ 847 (1139)
...+|+.||++||||++|+.|.++ +.|+++||+.||+|++++.+
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 455888999999999999999877 67899999999999998875
No 49
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=96.79 E-value=0.00023 Score=68.98 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=66.5
Q ss_pred ccccccc-ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHH-HcCCcccCCCCCccc
Q 001148 414 QCLLLEY-DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLR-QAGVKLYDEDGTAIM 491 (1139)
Q Consensus 414 Q~~l~e~-d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk-~~gi~l~~~~g~~I~ 491 (1139)
|..+..| +..|+|.-+|++||..+|.|+..+.++.. .......-...+|++.|++..+ .-||+-. +.
T Consensus 18 q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~li-----d~~~l~~~~~~~n~~~af~~Ae~~lgi~~l------l~ 86 (118)
T 1bhd_A 18 RQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLF-----SWDKVVKMSPIERLEHAFSKAQTYLGIEKL------LD 86 (118)
T ss_dssp HHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGS-----CHHHHHHSCHHHHHHHHHHHHHHHHCCCCC------SC
T ss_pred HHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcC-----CHHHhCcCCHHHHHHHHHHHHHHHcCCCcc------cC
Confidence 4455555 46899999999999999999999887621 1111123356899999999997 7898754 78
Q ss_pred cccccCCCc--cchhHHHHHHHHHh
Q 001148 492 EDDVANGDK--ELILSLLWNMFVHL 514 (1139)
Q Consensus 492 a~DIVdG~~--k~tLgLLW~li~~f 514 (1139)
++||+.|++ +.++..+=++...|
T Consensus 87 ~eDv~~~~pD~ksvmtYvs~l~~~~ 111 (118)
T 1bhd_A 87 PEDVAVRLPDKKSIIMYLTSLFEVL 111 (118)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHC
Confidence 999998855 67777776666555
No 50
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.73 E-value=0.0024 Score=55.04 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHhhHHHHHh
Q 001148 807 AALKIQSSWRNFIASRSLQKN---YFAATMIQSHFRSSSHHRA 846 (1139)
Q Consensus 807 AAi~IQ~~~Rg~laRr~y~r~---r~AAi~IQs~~Rg~laRr~ 846 (1139)
.++.||+.+||+++|+.|.+. +.|+.+||+.+|+|+..+.
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444444444444444433 3344444555554444443
No 51
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.72 E-value=0.0024 Score=54.91 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHhh
Q 001148 774 GATDEQKYLHSYAEIDKASIMCQEKSDSDVGIKAALKIQSSWRNFIASRS 823 (1139)
Q Consensus 774 AAi~IQa~~Rg~laRr~~~~lr~er~r~~~~~~AAi~IQ~~~Rg~laRr~ 823 (1139)
.++.+|+++|||++|+.+.++..+ ..|+..||+.+|+|..++.
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~-------~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREK-------SVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcc
Confidence 457777777777777777665432 2366677777777776654
No 52
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.70 E-value=0.011 Score=77.71 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHhhHHHHHh
Q 001148 806 KAALKIQSSWRNFIASRSLQKNY---FAATMIQSHFRSSSHHRA 846 (1139)
Q Consensus 806 ~AAi~IQ~~~Rg~laRr~y~r~r---~AAi~IQs~~Rg~laRr~ 846 (1139)
.+++.||++||||++|+.|.+++ .|+++||+.||+|+.++.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555555555555555432 355555555555555543
No 53
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=96.69 E-value=0.0007 Score=74.11 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=67.2
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCC-
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANG- 498 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG- 498 (1139)
+..|+|+-+|++||..+|.|+..+.++.. .......-...+|++.|++..++ -||+.. +.|+|||+|
T Consensus 158 ~v~v~nFs~s~~DG~a~~aLi~~~~P~~i-----d~~~l~~~~~~~n~~~a~~~A~~~lGi~~~------l~peDiv~~~ 226 (254)
T 1wku_A 158 NVNVQNFHTSWKDGLALCALIHRHRPDLI-----DYAKLRKDDPIGNLNTAFEVAEKYLDIPKM------LDAEDIVNTP 226 (254)
T ss_dssp TCCCCSSSGGGTTSHHHHHHHHHHCTTSC-----CGGGCCTTCHHHHHHHHHHHHHHHSCCCCC------SCHHHHHHSS
T ss_pred CCcCCCCccchhhHHHHHHHHHHHCCCcc-----cccccCcCCHHHHHHHHHHHHHHHcCCCCc------CCHHHHhccC
Confidence 35799999999999999999999998732 22222334689999999999986 799754 789999998
Q ss_pred --CccchhHHHHHHHHHhh
Q 001148 499 --DKELILSLLWNMFVHLQ 515 (1139)
Q Consensus 499 --~~k~tLgLLW~li~~fq 515 (1139)
+.+.++..+=+++..|.
T Consensus 227 ~pD~k~imtyva~l~~~~~ 245 (254)
T 1wku_A 227 KPDEKAIMTYVSCFYHAFA 245 (254)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhh
Confidence 56889998888887764
No 54
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=96.69 E-value=0.00038 Score=75.74 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=65.0
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCC-
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANG- 498 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG- 498 (1139)
+..|+|+-+|++||..+|.|+..+.++...... ...-...+|++.|++.+++ -||+.. +.|+||+.+
T Consensus 151 ~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~-----l~~~~~~~n~~~a~~~a~~~lGi~~~------l~peDi~~~~ 219 (245)
T 1sh5_A 151 GLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNK-----VYRQTNLENLDQAFSVAERDLGVTRL------LDPEDVDVPQ 219 (245)
T ss_dssp TCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHH-----HHHSCHHHHHHHHHHHHHHHHCCCCC------CCHHHHSSSS
T ss_pred CcccCCccccccchHHHHHHHHHHCCCCCCHHH-----cccCCHHHHHHHHHHHHHHhCCCCcc------CCHHHhccCC
Confidence 457999999999999999999998876211111 1123578999999999986 898754 789999976
Q ss_pred -CccchhHHHHHHHHHh
Q 001148 499 -DKELILSLLWNMFVHL 514 (1139)
Q Consensus 499 -~~k~tLgLLW~li~~f 514 (1139)
|.+.++..+=+++.+|
T Consensus 220 pd~k~i~tyva~l~~~~ 236 (245)
T 1sh5_A 220 PDEKSIITYVSSLYDAM 236 (245)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHc
Confidence 5588998888888776
No 55
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=96.68 E-value=0.0016 Score=68.31 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=58.1
Q ss_pred chhHHHhhhHHHHHHHHHHhcCCCccccccccC-------CCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccC
Q 001148 425 TNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVP-------SDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVAN 497 (1139)
Q Consensus 425 ~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p-------~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVd 497 (1139)
.|+...|+||++||+|++.|.++....++++.| +..-++.++||+.-|++++..|++-.+ ...+.|+++
T Consensus 68 ~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~Gvp~~~----lFet~DL~e 143 (193)
T 3i6x_A 68 TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIF----YPETTDIYD 143 (193)
T ss_dssp GGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHTCCGGG----CCCHHHHHS
T ss_pred HHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcCCCccc----CCCcHHHhc
Confidence 488999999999999999999875434566433 245679999999999999999998766 148899999
Q ss_pred CC
Q 001148 498 GD 499 (1139)
Q Consensus 498 G~ 499 (1139)
|.
T Consensus 144 ~k 145 (193)
T 3i6x_A 144 RK 145 (193)
T ss_dssp CS
T ss_pred CC
Confidence 85
No 56
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.64 E-value=0.0022 Score=80.88 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHH
Q 001148 730 LPGNAAKVIKFHFRGWIERRNFLKMRNAARSILLHCISTPDLLSGATDEQKYLHSYAEIDKAS 792 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr~y~~~R~a~~~wr~~r~~~~~~~~AAi~IQa~~Rg~laRr~~~ 792 (1139)
+...+|+.||++||||++|++|.+++.. ..|+++||+.||||++++.+.
T Consensus 777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~--------------r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 777 RLSKIISMFQAHIRGYLIRKAYKKLQDQ--------------RIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcchH
Confidence 4567888999999999999999887652 346788888888888876543
No 57
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=96.62 E-value=0.00036 Score=75.99 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=65.0
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHH-HcCCcccCCCCCccccccccCCC
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLR-QAGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk-~~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
+..|+|+-+|++||..+|.|+..+.++......+ . +.-...+|++.|++.++ ..||+.. +.|+||++|+
T Consensus 153 ~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~-~---~~~~~~~n~~~a~~~A~~~lGi~~~------l~peDi~~~~ 222 (246)
T 1dxx_A 153 QVNVINFTTSWSDGLALNALIHSHRPDLFDWNSV-V---SQQSATQRLEHAFNIARYQLGIEKL------LDPEDVDTTY 222 (246)
T ss_dssp TCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHH-H---TCCCHHHHHHHHHHHHHHTTCCCCC------CCHHHHSSSS
T ss_pred CCCcCCCcccchhHHHHHHHHHHHCcCccchhhh-c---ccCCHHHHHHHHHHHHHHhCCCCcc------CCHHHhhcCC
Confidence 4579999999999999999999988752111111 0 12256899999999998 6888743 7899999999
Q ss_pred c--cchhHHHHHHHHHh
Q 001148 500 K--ELILSLLWNMFVHL 514 (1139)
Q Consensus 500 ~--k~tLgLLW~li~~f 514 (1139)
+ +.++..+=+++.+|
T Consensus 223 pD~k~i~tyva~l~~~~ 239 (246)
T 1dxx_A 223 PDKKSILMYITSLFQVL 239 (246)
T ss_dssp CCHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHc
Confidence 9 89999888887766
No 58
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=96.56 E-value=0.0021 Score=62.93 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=53.0
Q ss_pred hh-HHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCCC
Q 001148 426 NL-FVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANGD 499 (1139)
Q Consensus 426 nL-~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG~ 499 (1139)
++ .+-|+||++||+|++.+.+++ ..+++..+..-++.++|++.-|++++. .|+.+ +.+.|+++|.
T Consensus 39 ~~l~~~LkdGvvLCkLiN~l~Pg~--i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~~l-------F~t~DL~e~k 105 (126)
T 2l3g_A 39 GFLQASLKDGVVLCRLLERLLPGT--IEKVYPEPRSESECLSNIREFLRGCGASLRLET-------FDANDLYQGQ 105 (126)
T ss_dssp HHHHHHHTTSHHHHHHHHHHSTTC--CSCCCSSCCSHHHHHHHHHHHHHHHHHTSCCCC-------CCHHHHHTTS
T ss_pred hHHHHHHccHHHHHHHHHHhCCCC--CCccCCCCCcchHHHHHHHHHHHHHHHhCCCCc-------cCHHHHHhCC
Confidence 55 499999999999999999874 346654455578999999999999999 77532 7899999975
No 59
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=96.53 E-value=0.0015 Score=68.55 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=57.9
Q ss_pred cchhHHHhhhHHHHHHHHHHhcCCCccccccccC-------CCCchhHHhhHHHHHHHHHHcCCcccCCCCCcccccccc
Q 001148 424 VTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVP-------SDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVA 496 (1139)
Q Consensus 424 V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p-------~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIV 496 (1139)
..|+..-|+||++||+|++.+.++.....+++.+ +..-++.++||+.-|++++..|++-.+ ...+.|++
T Consensus 45 ~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~~~Gvp~~~----lFet~DL~ 120 (190)
T 2rr8_A 45 TTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIF----YPETTDIY 120 (190)
T ss_dssp HHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGGGTTCCSTT----CCCHHHHT
T ss_pred hhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHHHcCCCccc----cCCHHHHH
Confidence 3589999999999999999999875333455433 234578999999999999999998766 14899999
Q ss_pred CCCc
Q 001148 497 NGDK 500 (1139)
Q Consensus 497 dG~~ 500 (1139)
+|.-
T Consensus 121 e~kn 124 (190)
T 2rr8_A 121 DRKN 124 (190)
T ss_dssp CTTC
T ss_pred hcCC
Confidence 9763
No 60
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=96.50 E-value=0.00068 Score=75.73 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=64.6
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHH-HcCCcccCCCCCccccccccCC-
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLR-QAGVKLYDEDGTAIMEDDVANG- 498 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk-~~gi~l~~~~g~~I~a~DIVdG- 498 (1139)
+..|+|+-+|++||+.++.|++.+.++......+ ..-...+|++.|++.++ +.||+.. +.||||+.+
T Consensus 207 ~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l-----~~~~~~~N~~~Af~~Ae~~LGi~~l------l~pEDi~~~~ 275 (296)
T 3f7p_A 207 GLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKV-----YRQTNLENLDQAFSVAERDLGVTRL------LDPEDVDVPQ 275 (296)
T ss_dssp TCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHH-----TTSCHHHHHHHHHHHHHHHHCCCCC------CCHHHHSSSS
T ss_pred CCcCCCccccccccHHHHHHHHHHCcCccCHHHc-----CcccHHHHHHHHHHHHHHhCCCCcc------CCHHHhcCCC
Confidence 4579999999999999999999998762111111 12357899999999995 6899754 789999886
Q ss_pred -CccchhHHHHHHHHHh
Q 001148 499 -DKELILSLLWNMFVHL 514 (1139)
Q Consensus 499 -~~k~tLgLLW~li~~f 514 (1139)
|.+.++..+=+++.+|
T Consensus 276 pDeksimtyvs~ly~~f 292 (296)
T 3f7p_A 276 PDEKSIITYVSSLYDAM 292 (296)
T ss_dssp CCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 5588998888887766
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.33 E-value=0.013 Score=77.24 Aligned_cols=23 Identities=17% Similarity=-0.008 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHhhHHHHHhh
Q 001148 825 QKNYFAATMIQSHFRSSSHHRAA 847 (1139)
Q Consensus 825 ~r~r~AAi~IQs~~Rg~laRr~~ 847 (1139)
.+....++.||++||||++|+.+
T Consensus 789 ~~l~~~~~~iQ~~~Rg~l~R~~~ 811 (1184)
T 1i84_S 789 LKITDVIIAFQAQCRGYLARKAF 811 (1184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888776
No 62
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=95.91 E-value=0.0083 Score=58.43 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=65.0
Q ss_pred HHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHHH
Q 001148 429 VDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLL 507 (1139)
Q Consensus 429 ~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLL 507 (1139)
++|+||+.+|+|++.|.+++....|+++.+......++|.++-.++++..||+-. |..+.+|.|...--|-++
T Consensus 26 E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~------i~v~kLvkgk~qdnlefl 98 (123)
T 2qjz_A 26 EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI------IPVDKLVKGKFQDNFEFV 98 (123)
T ss_dssp GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCC------CCHHHHTTCCHHHHHHHH
T ss_pred HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCCc------cCHHHHHcCCchhHHHHH
Confidence 6899999999999999988777779988999999999999999999999999754 889999999977666554
No 63
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.79 E-value=0.041 Score=56.46 Aligned_cols=110 Identities=22% Similarity=0.324 Sum_probs=84.2
Q ss_pred HHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCc-chhhh
Q 001148 964 LRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYP-HLIDV 1042 (1139)
Q Consensus 964 L~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~-~~~~~ 1042 (1139)
+-.|++..+..-..+++..|..++..++..++.+++.|++..+..++.+ ++.+|...++.+|.||+... .....
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4445566666666778888888888889999999999999999998864 47899999999999999654 44454
Q ss_pred hhcccchHHHHHHHHHhhccCccc-hHHHHHHHhhCCCc
Q 001148 1043 LIDSQGSVQTIMWELVRNKEEGYF-IAAEILNKICSTHK 1080 (1139)
Q Consensus 1043 v~~~~~~v~t~~~~ll~~k~~~~f-~a~~ll~~l~~~~~ 1080 (1139)
++ ..+.|..| .++|++.+..+- .||..|..|+....
T Consensus 92 i~-~~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~ 128 (210)
T 4db6_A 92 VI-DAGALPAL-VQLLSSPNEQILQEALWALSNIASGGN 128 (210)
T ss_dssp HH-HTTCHHHH-HHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HH-HCCCHHHH-HHHHcCCcHHHHHHHHHHHHHHHcCCH
Confidence 54 46778776 788876664444 48899999996544
No 64
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.56 E-value=0.014 Score=59.12 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=65.4
Q ss_pred HHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHHH
Q 001148 429 VDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLL 507 (1139)
Q Consensus 429 ~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLL 507 (1139)
++|+||+.+|+|++.|.++.....|+++.+......++|.++-.++++..||+-. |..+.+|.|...--|-++
T Consensus 43 E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k~------ipV~kLvkgk~qdNlEFl 115 (159)
T 1wyo_A 43 EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI------IPVEKLVKGKFQDNFEFI 115 (159)
T ss_dssp GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCCC------CCHHHHTTTCSHHHHHHH
T ss_pred hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCCc------cCHHHHhcCCchhHHHHH
Confidence 6899999999999999988777778888999999999999999999999999754 889999999987777654
No 65
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=95.45 E-value=0.0062 Score=66.17 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=58.4
Q ss_pred cccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCCCc
Q 001148 422 FRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 422 ~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
..|+|+-+|++||+.++.|+..+.++.. .. ....+.-..++|++.|++.+++ -||+.. +.|+||++|++
T Consensus 159 ~~v~nFs~s~~dG~a~~aLi~~~~P~~i--~~--~~~l~~~~~~~n~~~a~~~A~~~lGi~~~------l~peDi~~~~~ 228 (245)
T 2wa7_A 159 LPITNFNQNWQDGKALGALVDSCAPGLC--PD--WESWDPQKPVDNAREAVQQADDWLGVPQV------ITPEEIIHPDV 228 (245)
T ss_dssp SCCCCSSGGGTTSHHHHHHHHHHSTTSS--TT--GGGSCTTCHHHHHHHHHHHHHHHSCCCCS------SCHHHHTCTTC
T ss_pred CCCCCCcccchhhHHHHHHHHHHCcccc--cc--ccccCcccHHHHHHHHHHHHHHhCCCCcc------CCHHHhccCCC
Confidence 5799999999999999999999987621 01 1122345789999999999987 899754 78999999765
Q ss_pred --cchhHHH
Q 001148 501 --ELILSLL 507 (1139)
Q Consensus 501 --k~tLgLL 507 (1139)
+.++..+
T Consensus 229 d~ksi~tyv 237 (245)
T 2wa7_A 229 DEHSVMTYL 237 (245)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 4555544
No 66
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=95.30 E-value=0.0069 Score=66.88 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=56.9
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCC-
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANG- 498 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG- 498 (1139)
+..|+|+-+|++||+.++.|+..+.++.. .. ....+.-.+.+|++.|++..++ .||+-. +.|+||+++
T Consensus 185 ~~~I~nFs~sw~DG~af~aLi~~~~P~li--~d--~~~l~~~~~~~n~~~Af~~Ae~~lGi~~l------l~peDiv~~~ 254 (272)
T 3hoc_A 185 QLPITNFSRDWQSGRALGALVDSCAPGLC--PD--WDSWDASKPVTNAREAMQQADDWLGIPQV------ITPEEIVDPN 254 (272)
T ss_dssp TSCCCCSSGGGTTSHHHHHHHHHHSTTSS--TT--GGGSCTTCHHHHHHHHHHHHHHHHCCCCS------SCHHHHTCTT
T ss_pred CCCCCChhhcccchHHHHHHHHHhCcccc--cc--hhhcCccCHHHHHHHHHHHHHHhCCCCcc------CCHHHhccCC
Confidence 35799999999999999999999998721 01 1223345789999999999997 899754 789999995
Q ss_pred -Cccchh
Q 001148 499 -DKELIL 504 (1139)
Q Consensus 499 -~~k~tL 504 (1139)
+.+.++
T Consensus 255 pD~ksim 261 (272)
T 3hoc_A 255 VDKHSVM 261 (272)
T ss_dssp CCHHHHH
T ss_pred CChHHHH
Confidence 444444
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.09 E-value=0.06 Score=56.77 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=83.3
Q ss_pred HHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchh-hhhh
Q 001148 966 ELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLI-DVLI 1044 (1139)
Q Consensus 966 ~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~-~~v~ 1044 (1139)
.++...+..-...++..|..++..++..++.+++.|++..+..++.+ ++.+|.+.++.+|.||+..+... ..+.
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (252)
T 4db8_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGNEQIQAVI 135 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence 34444454555667778888888889999999999999999988765 68899999999999999998887 4444
Q ss_pred cccchHHHHHHHHHhhccCccc-hHHHHHHHhhCCCc
Q 001148 1045 DSQGSVQTIMWELVRNKEEGYF-IAAEILNKICSTHK 1080 (1139)
Q Consensus 1045 ~~~~~v~t~~~~ll~~k~~~~f-~a~~ll~~l~~~~~ 1080 (1139)
..+.+..| .+++++.+..+- .+|..|..|+....
T Consensus 136 -~~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 136 -DAGALPAL-VQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp -HTTHHHHH-HHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred -HCCCHHHH-HHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 46778776 778876554444 38899999997554
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.87 E-value=0.14 Score=53.50 Aligned_cols=104 Identities=25% Similarity=0.313 Sum_probs=79.5
Q ss_pred hhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcC-cchhhhhhccc
Q 001148 969 SMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARY-PHLIDVLIDSQ 1047 (1139)
Q Consensus 969 ~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky-~~~~~~v~~~~ 1047 (1139)
...+.....+++..|..+...++..+..+++.|++..+..++.+ ++.+|...++.+|.||+.. +.....+. ..
T Consensus 12 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~ 85 (252)
T 4hxt_A 12 TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPDEAIKAIV-DA 85 (252)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHH-HT
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcCChHHHHHHH-HC
Confidence 33444555677778888888888889999999999999998875 4699999999999999998 55555444 46
Q ss_pred chHHHHHHHHHhhccCccch-HHHHHHHhhCCC
Q 001148 1048 GSVQTIMWELVRNKEEGYFI-AAEILNKICSTH 1079 (1139)
Q Consensus 1048 ~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~ 1079 (1139)
+.+..| .+++++.+..+-. +|..|..|+...
T Consensus 86 ~~i~~l-~~ll~~~~~~v~~~a~~~L~~l~~~~ 117 (252)
T 4hxt_A 86 GGVEVL-VKLLTSTDSEVQKEAARALANIASGP 117 (252)
T ss_dssp THHHHH-HHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHH-HHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 777776 7888765544444 889999999543
No 69
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.76 E-value=0.15 Score=53.25 Aligned_cols=109 Identities=27% Similarity=0.336 Sum_probs=81.7
Q ss_pred HHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc-Ccchhhhhhc
Q 001148 967 LLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR-YPHLIDVLID 1045 (1139)
Q Consensus 967 Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak-y~~~~~~v~~ 1045 (1139)
++...+..-...++..|..++..++.+++.+++.|++..+..++.+ ++.+|...++.+|.||+. .+.....+.+
T Consensus 52 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 126 (252)
T 4hxt_A 52 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPDEAIKAIVD 126 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444445566667778888889999999999999999998873 679999999999999995 5555555554
Q ss_pred ccchHHHHHHHHHhhccCccch-HHHHHHHhhCCCchh
Q 001148 1046 SQGSVQTIMWELVRNKEEGYFI-AAEILNKICSTHKGV 1082 (1139)
Q Consensus 1046 ~~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~~~ 1082 (1139)
.+.+..| .+++++.+..+-. +|..|..|+...+..
T Consensus 127 -~~~i~~L-~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 127 -AGGVEVL-VKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp -TTHHHHH-HHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred -CCCHHHH-HHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 6788887 7888765544443 889999999855433
No 70
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.56 E-value=0.13 Score=52.52 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=79.0
Q ss_pred HhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchh-hhhhcc
Q 001148 968 LSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLI-DVLIDS 1046 (1139)
Q Consensus 968 l~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~-~~v~~~ 1046 (1139)
+...+..-...++..|-.++..++..+..+++.|++..+..++.+ ++.+|.+.++.+|.||+...... +.+. .
T Consensus 63 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~ 136 (210)
T 4db6_A 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGNEQIQAVI-D 136 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHH-H
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC-----CcHHHHHHHHHHHHHHHcCCHHHHHHHH-H
Confidence 333444444556667777777888889999999999999998854 47999999999999999755443 3443 4
Q ss_pred cchHHHHHHHHHhhccCccch-HHHHHHHhhCCCchh
Q 001148 1047 QGSVQTIMWELVRNKEEGYFI-AAEILNKICSTHKGV 1082 (1139)
Q Consensus 1047 ~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~~~ 1082 (1139)
.+.+..| .++++..+..+-. +|..|..||......
T Consensus 137 ~~~i~~L-~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 137 AGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp TTHHHHH-HHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCcHHHH-HHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 5677776 7888765544444 889999999874433
No 71
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=94.43 E-value=0.017 Score=66.02 Aligned_cols=70 Identities=24% Similarity=0.241 Sum_probs=54.6
Q ss_pred cccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCCCc
Q 001148 422 FRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 422 ~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
..|+|+-+|++||..++.|+..+.++... . ....+.-..++|++.|++.+++ -||+.. +.||||+++++
T Consensus 156 ~~v~nF~~sw~DG~af~aLi~~~~P~~~~--d--~~~l~~~~~~~n~~~Af~~Ae~~lGip~l------l~peDi~~~~p 225 (347)
T 4b7l_A 156 LPITNFNQNWQDGKALGALVDSCAPGLCP--D--WESWDPQKPVDNAREAMQQADDWLGVPQV------ITPEEIIHPDV 225 (347)
T ss_dssp SCCCCSSGGGTTSHHHHHHHHHHSTTSST--T--GGGSCTTCHHHHHHHHHHHHHHHHCCCCS------SCHHHHTCTTC
T ss_pred cccCCCCCCccchHHHHHHHHHhCCcccc--c--hhhcCcCCHHHHHHHHHHHHHHhcCCCcc------cCHHHcCCCCC
Confidence 46899999999999999999999876210 0 1122345678999999999986 798754 78999999987
Q ss_pred c
Q 001148 501 E 501 (1139)
Q Consensus 501 k 501 (1139)
+
T Consensus 226 D 226 (347)
T 4b7l_A 226 D 226 (347)
T ss_dssp C
T ss_pred C
Confidence 3
No 72
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=94.43 E-value=0.0063 Score=77.28 Aligned_cols=83 Identities=11% Similarity=0.247 Sum_probs=65.4
Q ss_pred ccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHH-cCCcccCCCCCccccccccCC-
Q 001148 421 DFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQ-AGVKLYDEDGTAIMEDDVANG- 498 (1139)
Q Consensus 421 d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~-~gi~l~~~~g~~I~a~DIVdG- 498 (1139)
+..|+|+-+|++||+.+|.|+..+.++......+ ..-.+.+|++.|++...+ -||+.. +.|+|||++
T Consensus 139 ~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~-----~~~~~~~n~~~a~~~a~~~lg~~~~------l~~ed~~~~~ 207 (863)
T 1sjj_A 139 NVNIQNFHISWKDGLGFCALIHRHRPELIDYGKL-----RKDDPLTNLNTAFDVAEKYLDIPKM------LDAEDIVGTA 207 (863)
T ss_dssp TCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGG-----GSCCCGGGCTHHHHHHHHHHCCCCS------CCHHHHTTCS
T ss_pred CCCCCCCccccccHHHHHHHHHHhCCCCcChhhC-----CCCCHHHHHHHHHHHHHHhCCCCCc------cCHHHHhCCC
Confidence 4579999999999999999999998873211111 223578999999999986 788754 789999998
Q ss_pred --CccchhHHHHHHHHHh
Q 001148 499 --DKELILSLLWNMFVHL 514 (1139)
Q Consensus 499 --~~k~tLgLLW~li~~f 514 (1139)
+.+.++..+=+++.+|
T Consensus 208 ~pd~~~~~~y~~~l~~~~ 225 (863)
T 1sjj_A 208 RPDEKAIMTYVSSFYHAF 225 (863)
T ss_dssp SCCHHHHHHHHHHTTTTT
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 4588998888887776
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.34 E-value=0.19 Score=58.98 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccch
Q 001148 970 MKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGS 1049 (1139)
Q Consensus 970 ~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~ 1049 (1139)
..+...-.+|+..|-.++..++.+...++++||+..+..+++. -++.+|.+.++.+|.||+..+.....+.+ ++
T Consensus 55 s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~----~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~ 128 (457)
T 1xm9_A 55 SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR----TGNAEIQKQLTGLLWNLSSTDELKEELIA--DA 128 (457)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT----CCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HH
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh----CCCHHHHHHHHHHHHHHhcCHHhHHHHHh--cc
Confidence 3444444556667777776678888999999999999998852 25789999999999999999888887876 99
Q ss_pred HHHHHHHHHhh----------------ccCccch-HHHHHHHhhCCCchhhHHhhChHHHHHHHHHHH
Q 001148 1050 VQTIMWELVRN----------------KEEGYFI-AAEILNKICSTHKGVEAISKLPAHLKRLNSLVD 1100 (1139)
Q Consensus 1050 v~t~~~~ll~~----------------k~~~~f~-a~~ll~~l~~~~~~~~~v~~~p~~~~rl~sl~~ 1100 (1139)
|..| ++++.. .+..++. |+..|..||.+++..+.|...+.++..|..+.+
T Consensus 129 i~~L-v~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 129 LPVL-ADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHH-HHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHH-HHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHH
Confidence 9887 777721 1223554 889999999986666666665566666554443
No 74
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.30 E-value=0.16 Score=54.73 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=92.6
Q ss_pred HHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcc
Q 001148 967 LLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDS 1046 (1139)
Q Consensus 967 Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~ 1046 (1139)
+|...+..---+|+..|-.++..++.+-..++++||+..+..++++ -++.++.++++.+|+||+.++.....+.+
T Consensus 60 lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~----~~~~~~~e~a~~aL~nLS~~~~~k~~i~~- 134 (233)
T 3tt9_A 60 LLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ----TRDLETKKQITGLLWNLSSNDKLKNLMIT- 134 (233)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHHHHHHHHcChhhHHHHHh-
Confidence 3344444444455667777777677888899999999999999875 26899999999999999999988777754
Q ss_pred cchHHHHHHHHH----hh-------c-----cCccch-HHHHHHHhhCCC-chhhHHhhChHHHHHHHHHHHH
Q 001148 1047 QGSVQTIMWELV----RN-------K-----EEGYFI-AAEILNKICSTH-KGVEAISKLPAHLKRLNSLVDE 1101 (1139)
Q Consensus 1047 ~~~v~t~~~~ll----~~-------k-----~~~~f~-a~~ll~~l~~~~-~~~~~v~~~p~~~~rl~sl~~l 1101 (1139)
.+|..| .+++ .. | +..+|. |...|..|+... +.-+.|+..+..++-|..+.+-
T Consensus 135 -~~i~~L-v~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 135 -EALLTL-TENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp -HHHHHH-CCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred -ccHHHH-HHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHh
Confidence 477776 3332 11 1 224665 778888887744 6667788888888888777653
No 75
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.21 E-value=0.02 Score=40.90 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 001148 730 LPGNAAKVIKFHFRGWIERR 749 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr 749 (1139)
+.+.||++||++||+|+.++
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35678888888888888764
No 76
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=94.13 E-value=0.029 Score=41.38 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 001148 730 LPGNAAKVIKFHFRGWIERRN 750 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr~ 750 (1139)
+.+.||++||++||+|+.|+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346788888888888888764
No 77
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=93.89 E-value=0.038 Score=39.51 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 001148 804 GIKAALKIQSSWRNFIASR 822 (1139)
Q Consensus 804 ~~~AAi~IQ~~~Rg~laRr 822 (1139)
+..||++||++||+|+.++
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3457777777777777664
No 78
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.60 E-value=0.16 Score=60.40 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=96.0
Q ss_pred HHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcc
Q 001148 967 LLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDS 1046 (1139)
Q Consensus 967 Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~ 1046 (1139)
+|...+..-.-.++..|-.+...++.|...+++.|++..+..++.+.+.+.....+++.++..|.|+++..........+
T Consensus 151 lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~ 230 (510)
T 3ul1_B 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV 230 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 34444444444556677777888999999999999999999999988888888999999999999999988776666666
Q ss_pred cchHHHHHHHHHhhccCccch-HHHHHHHhhCCCchhhHHhhChHHHHHHH
Q 001148 1047 QGSVQTIMWELVRNKEEGYFI-AAEILNKICSTHKGVEAISKLPAHLKRLN 1096 (1139)
Q Consensus 1047 ~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~~~~~v~~~p~~~~rl~ 1096 (1139)
..++.+| ..|+...+..+-. ||..|..|+..+.....+.....++.+|.
T Consensus 231 ~~~lp~L-~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 280 (510)
T 3ul1_B 231 EQILPTL-VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280 (510)
T ss_dssp HHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHH
T ss_pred HhHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhh
Confidence 7777776 7888776655554 89999999987654433333334444443
No 79
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.43 E-value=0.16 Score=60.63 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=96.9
Q ss_pred HHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhc
Q 001148 966 ELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLID 1045 (1139)
Q Consensus 966 ~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~ 1045 (1139)
.|+...+..-.-.|+..|-.++..++.|...+++.|++..+..++...+.+.....+++.++..|.|+++..........
T Consensus 169 ~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 248 (529)
T 3tpo_A 169 SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 248 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 34555555555566677888888899999999999999999999998888888899999999999999998776666666
Q ss_pred ccchHHHHHHHHHhhccCccch-HHHHHHHhhCCCchhhHHhhChHHHHHH
Q 001148 1046 SQGSVQTIMWELVRNKEEGYFI-AAEILNKICSTHKGVEAISKLPAHLKRL 1095 (1139)
Q Consensus 1046 ~~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~~~~~v~~~p~~~~rl 1095 (1139)
+..++.+| ..|++..+..+-. ||..|..|+..............++.+|
T Consensus 249 ~~~~lp~L-~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~L 298 (529)
T 3tpo_A 249 VEQILPTL-VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 298 (529)
T ss_dssp HHHHHHHH-HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHH
T ss_pred HhhHHHHH-HHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHH
Confidence 67777776 7788766655555 8888888887665433332333344443
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.27 E-value=0.33 Score=54.01 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=78.8
Q ss_pred HhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcC-cchhhhhhcc
Q 001148 968 LSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARY-PHLIDVLIDS 1046 (1139)
Q Consensus 968 l~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky-~~~~~~v~~~ 1046 (1139)
|...+-.---.|+..|-.+..-++.|-..+++.||+..+..++.+ -|+.+|.+.++..|-||++- +...+++.+
T Consensus 91 L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~----~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~- 165 (296)
T 1xqr_A 91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR----DACDTVRVKALFAISCLVREQEAGLLQFLR- 165 (296)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc----CCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-
Confidence 333444333456668888888899999999999999999999975 35789999999999999974 444555555
Q ss_pred cchHHHHHHHHHhhccCccch-HHHHHHHhhCC
Q 001148 1047 QGSVQTIMWELVRNKEEGYFI-AAEILNKICST 1078 (1139)
Q Consensus 1047 ~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~ 1078 (1139)
.+.+..| .++|++.+..+-. ||..|..|+..
T Consensus 166 ~ggi~~L-~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 166 LDGFSVL-MRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp TTHHHHH-HHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5678776 7888875544444 88888888764
No 81
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=93.09 E-value=0.096 Score=51.50 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHccCCceecCCC-CCCchhhHHHHHHhhcc
Q 001148 548 LDLLLNWIQVICEKYDFRINNFS-SLTDGKAIWCLLDFYFR 587 (1139)
Q Consensus 548 ~~~LL~W~q~v~~~ygv~V~NFt-S~~DGraf~aLI~~~~p 587 (1139)
++.+..|+|...+.+|+.|+|+. +++||..+|.|++-..|
T Consensus 24 ~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~ 64 (131)
T 2vzc_A 24 KKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEG 64 (131)
T ss_dssp HHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcC
Confidence 67899999999998999999997 99999999999998843
No 82
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.04 E-value=0.046 Score=40.30 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHhhHHHHHH
Q 001148 887 KLKTKSAIIIQSHIRGWTARRR 908 (1139)
Q Consensus 887 k~~~~AAi~IQs~~Rg~laRr~ 908 (1139)
++...+|++||++||+|+.++.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888877764
No 83
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.00 E-value=0.33 Score=51.02 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=78.7
Q ss_pred HHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhc
Q 001148 966 ELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLID 1045 (1139)
Q Consensus 966 ~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~ 1045 (1139)
.++...+..-.-.++..|-.++...+..+..+++.|++..+..++.+ ++.+|...++.+|.||+..+......+-
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 177 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGNEQIQAVI 177 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34444444444556667777788888888999999999999988753 5889999999999999986543333333
Q ss_pred ccchHHHHHHHHHhhccCccch-HHHHHHHhhCCCc
Q 001148 1046 SQGSVQTIMWELVRNKEEGYFI-AAEILNKICSTHK 1080 (1139)
Q Consensus 1046 ~~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~ 1080 (1139)
..+.+..| .+++...+..+-. +|..|..||....
T Consensus 178 ~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 178 DAGALPAL-VQLLSSPNEQILQEALWALSNIASGGN 212 (252)
T ss_dssp HTTCHHHH-HHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HCCCHHHH-HHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence 36788776 7888766544444 8889999985443
No 84
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=92.62 E-value=0.11 Score=63.21 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=60.1
Q ss_pred ccccccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCC-CchhHHhhHHHHHHHH-HHcCCcccCCCCCcccccccc
Q 001148 419 EYDFRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSD-THRKNSVNCSIALQYL-RQAGVKLYDEDGTAIMEDDVA 496 (1139)
Q Consensus 419 e~d~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~-~R~~ki~Nv~~AL~~l-k~~gi~l~~~~g~~I~a~DIV 496 (1139)
.-+..+.||..-|+||+.||+|++.|.++.....+++.++. ..++.++||+.=|++. +..|++-.+ ...+.|+.
T Consensus 28 ~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~----~f~~~Dl~ 103 (587)
T 3ky9_A 28 WEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSE----LFEAFDLF 103 (587)
T ss_dssp STTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHTTCCCTTS----SCCHHHHH
T ss_pred CCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHcCCCHHH----cCCchhhh
Confidence 34567899999999999999999999988544456654343 4689999999999999 778887544 25778888
Q ss_pred CCC
Q 001148 497 NGD 499 (1139)
Q Consensus 497 dG~ 499 (1139)
++.
T Consensus 104 ~~~ 106 (587)
T 3ky9_A 104 DVQ 106 (587)
T ss_dssp TCS
T ss_pred ccC
Confidence 764
No 85
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.23 E-value=0.15 Score=49.81 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=70.4
Q ss_pred cccchhHHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHH-HHHHHHcCCcccCCCCCccccccccCCCc
Q 001148 422 FRVTNLFVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIA-LQYLRQAGVKLYDEDGTAIMEDDVANGDK 500 (1139)
Q Consensus 422 ~~V~nL~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~A-L~~lk~~gi~l~~~~g~~I~a~DIVdG~~ 500 (1139)
+.+.|+..||.||+.++.++...-+.-...+.+ .|+.+-..|+.|=+.- ..+++..|+++.. -..++|+.|.+
T Consensus 31 ~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y-~~~~S~~~K~~NW~~ln~kvl~kl~~~l~~-----~~i~~i~~~~~ 104 (127)
T 2ee7_A 31 RPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNY-VPANSLQQKLSNWGHLNRKVLKRLNFSVPD-----DVMRKIAQCAP 104 (127)
T ss_dssp CCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSC-CCCSSHHHHHHHHHHHHHHTTGGGTCCCCH-----HHHHHHHTTCT
T ss_pred CCCCchhhhccchhHHHHHHHHHCcCccccccc-CCCCcHHHHHHhHHHHHHHHHHHcCCCCCH-----HHHHHHHhCCC
Confidence 468899999999999999999888763333333 5677888999998887 4789988988765 35688999999
Q ss_pred cchhHHHHHHHHHh
Q 001148 501 ELILSLLWNMFVHL 514 (1139)
Q Consensus 501 k~tLgLLW~li~~f 514 (1139)
..+-.||..|..++
T Consensus 105 Gaie~lL~~L~~~l 118 (127)
T 2ee7_A 105 GVVELVLIPLRQRL 118 (127)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 86
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=91.35 E-value=0.012 Score=75.91 Aligned_cols=42 Identities=5% Similarity=-0.035 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHh
Q 001148 804 GIKAALKIQSSWRNFIASRSLQKNYFAATMIQSHFRSSSHHRA 846 (1139)
Q Consensus 804 ~~~AAi~IQ~~~Rg~laRr~y~r~r~AAi~IQs~~Rg~laRr~ 846 (1139)
...+|+.||+ +|||++|++|++++.+|+.||..+|++..|+.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777775 79999999999999999999998888776544
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.20 E-value=1.4 Score=50.09 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=72.7
Q ss_pred HHhhhHHhhhc-cHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc-CcchhhhhhcccchHHHHHHH
Q 001148 979 VCTTLDMATEN-SQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR-YPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 979 al~~Le~~Trl-s~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak-y~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
++..|-.++.. .+.+-+.++++|++..+..++... ++.++.+.++..|+||+. .+.....+....++|..| ++
T Consensus 147 A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~----~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~L-v~ 221 (354)
T 3nmw_A 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL-VG 221 (354)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHH-HH
T ss_pred HHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC----CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHH-HH
Confidence 33344444443 345566788999999999976432 467999999999999999 445555565578999887 88
Q ss_pred HHhhccCc----cch-HHHHHHHhhC----CCchhhHHhh
Q 001148 1057 LVRNKEEG----YFI-AAEILNKICS----THKGVEAISK 1087 (1139)
Q Consensus 1057 ll~~k~~~----~f~-a~~ll~~l~~----~~~~~~~v~~ 1087 (1139)
||+..++. +.. ||..|..|+. +++..+.+..
T Consensus 222 lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~ 261 (354)
T 3nmw_A 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261 (354)
T ss_dssp HTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88855432 554 8899999985 5555554443
No 88
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=90.45 E-value=1.6 Score=53.12 Aligned_cols=123 Identities=17% Similarity=0.168 Sum_probs=85.9
Q ss_pred HHhhhhHHHHHHHHhhhHHhhhc-cHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhc
Q 001148 967 LLSMKSVCGILHVCTTLDMATEN-SQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLID 1045 (1139)
Q Consensus 967 Ll~~k~ls~IL~al~~Le~~Trl-s~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~ 1045 (1139)
||...+..--.+|+..|-.++.. ++.+...++++||+..+..++++. ++.++.+.+..+|+||+..+.....+.
T Consensus 98 LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~----~~~~~~e~aa~aL~nLS~~~~~k~~I~- 172 (584)
T 3l6x_A 98 LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA----RDMDLTEVITGTLWNLSSHDSIKMEIV- 172 (584)
T ss_dssp GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC----CSHHHHHHHHHHHHHHTTSGGGHHHHH-
T ss_pred HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHhCCchhhHHHH-
Confidence 34444444444555566666664 577888999999999999999864 478999999999999999988777776
Q ss_pred ccchHHHHHHHHHh-------------hc-----cCccch-HHHHHHHhhCCCch-hhHHhhChHHHHHHH
Q 001148 1046 SQGSVQTIMWELVR-------------NK-----EEGYFI-AAEILNKICSTHKG-VEAISKLPAHLKRLN 1096 (1139)
Q Consensus 1046 ~~~~v~t~~~~ll~-------------~k-----~~~~f~-a~~ll~~l~~~~~~-~~~v~~~p~~~~rl~ 1096 (1139)
.++|..| ++|+. .| +..+|. |+..|..|+.+.+. -+.|......++-|.
T Consensus 173 -~~alp~L-v~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV 241 (584)
T 3l6x_A 173 -DHALHAL-TDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241 (584)
T ss_dssp -HHTHHHH-HHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHH
T ss_pred -hccHHHH-HHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHH
Confidence 4578877 55541 01 234666 88999999987643 455555555543333
No 89
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=89.49 E-value=4.9 Score=40.12 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhccchhHhhHHH
Q 001148 889 KTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSY 922 (1139)
Q Consensus 889 ~~~AAi~IQs~~Rg~laRr~~~~~~~Aai~IQa~ 922 (1139)
+..+++.||+.+|||++|+++.....+..++-++
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L 77 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTL 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4668888888888888888877654444444433
No 90
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.40 E-value=1.1 Score=52.53 Aligned_cols=115 Identities=18% Similarity=0.113 Sum_probs=81.1
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcC-cchhhhhhcccchHHH
Q 001148 974 CGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARY-PHLIDVLIDSQGSVQT 1052 (1139)
Q Consensus 974 s~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky-~~~~~~v~~~~~~v~t 1052 (1139)
..-.+|+..|..++...+.+...+++.|++..+..++++ ++.++-..++..|.||+.. +....++.+ .++|..
T Consensus 17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nLa~~~~~~k~~i~~-~G~i~~ 90 (457)
T 1xm9_A 17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-----PNQNVQQAAAGALRNLVFRSTTNKLETRR-QNGIRE 90 (457)
T ss_dssp HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-----SCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHH
Confidence 333455555555565666666789999999999988763 6889999999999999997 555555554 588888
Q ss_pred HHHHHHh-hccC-ccchHHHHHHHhhCCCchhhHHhhChHHHHHHHH
Q 001148 1053 IMWELVR-NKEE-GYFIAAEILNKICSTHKGVEAISKLPAHLKRLNS 1097 (1139)
Q Consensus 1053 ~~~~ll~-~k~~-~~f~a~~ll~~l~~~~~~~~~v~~~p~~~~rl~s 1097 (1139)
| ++||+ ..+. .-+-++..|+.|+..++.-+.|.. .++.-|..
T Consensus 91 L-v~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ 134 (457)
T 1xm9_A 91 A-VSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLAD 134 (457)
T ss_dssp H-HHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHH
T ss_pred H-HHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHH
Confidence 7 88887 4333 334588999999988665454543 44444433
No 91
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.96 E-value=0.32 Score=47.44 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHccCCc--eecCCC-CCCchhhHHHHHHhhccC
Q 001148 547 LLDLLLNWIQVICEKYDF--RINNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv--~V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
.++.+..|+|.++...+. .|+||. +++||..||.|++...|.
T Consensus 19 q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~ 63 (129)
T 2yrn_A 19 QKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANE 63 (129)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcC
Confidence 457899999998876665 599996 999999999999999443
No 92
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=88.87 E-value=0.82 Score=57.65 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=91.2
Q ss_pred HHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148 977 LHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 977 L~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
.+|+..|-.++..++..++.++++|++..|..++.+- +..|-+.|+..|-||+..+.....+.+..+.+..| +.
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-----~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~L-v~ 672 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-----HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFL-AL 672 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-----CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHH-HH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHH-HH
Confidence 4677777777888888999999999999999998753 45688999999999999988777766445677765 78
Q ss_pred HHhhccCccch-HHHHHHHhhC-CCchhhHHhhChHHHHHHHHHH
Q 001148 1057 LVRNKEEGYFI-AAEILNKICS-THKGVEAISKLPAHLKRLNSLV 1099 (1139)
Q Consensus 1057 ll~~k~~~~f~-a~~ll~~l~~-~~~~~~~v~~~p~~~~rl~sl~ 1099 (1139)
|+...+..+-. ||..|..|+. ++.-.+.|......++.|..+.
T Consensus 673 LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL 717 (810)
T 3now_A 673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717 (810)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 88876655555 8999999998 5665666666566777666443
No 93
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=88.80 E-value=1.8 Score=51.36 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=81.3
Q ss_pred HHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhh
Q 001148 963 ALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDV 1042 (1139)
Q Consensus 963 AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~ 1042 (1139)
.|-.|+...+-.....++..|-.++..+..+.+.++++|++..+..++.+ ++.+|...++.+|.||+........
T Consensus 255 ~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 255 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-----TELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-----SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-----CChhHHHHHHHHHHHHHccchHHHH
Confidence 34445555555555667777777788888888889999999999998864 6789999999999999876544433
Q ss_pred hhcccchHHHHHHHHHhhccCccch-HHHHHHHhhCCCc
Q 001148 1043 LIDSQGSVQTIMWELVRNKEEGYFI-AAEILNKICSTHK 1080 (1139)
Q Consensus 1043 v~~~~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~ 1080 (1139)
.+-..+.+..| ..||++.+..+-. ||..|..|+....
T Consensus 330 ~i~~~g~l~~L-~~LL~~~~~~i~~~a~~aL~nl~~~~~ 367 (529)
T 3tpo_A 330 KVIDAGALAVF-PSLLTNPKTNIQKEATWTMSNITAGRQ 367 (529)
T ss_dssp HHHHTTGGGGH-HHHTTCSSHHHHHHHHHHHHHHHTSCH
T ss_pred HHhhcccHHHH-HHHHcCCCHHHHHHHHHHHHHHhcccH
Confidence 33335667665 7888865555544 8888888886544
No 94
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=88.67 E-value=1.1 Score=52.96 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=71.6
Q ss_pred HHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148 977 LHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 977 L~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
..++..|..+...++.+...+++.|++..+..++.. ++.+|...++.+|.||+....-........+.+..| ..
T Consensus 191 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L-~~ 264 (530)
T 1wa5_B 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL-AK 264 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-----CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHH-HH
T ss_pred HHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-----CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHH-HH
Confidence 445556666667778888889999999999998764 789999999999999998752222222246777776 77
Q ss_pred HHhhccCccch-HHHHHHHhhCCC
Q 001148 1057 LVRNKEEGYFI-AAEILNKICSTH 1079 (1139)
Q Consensus 1057 ll~~k~~~~f~-a~~ll~~l~~~~ 1079 (1139)
++.+.+..+-. +|..|..|+...
T Consensus 265 lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 265 LIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88766655554 888888888754
No 95
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=87.50 E-value=1.7 Score=51.36 Aligned_cols=97 Identities=18% Similarity=0.322 Sum_probs=68.8
Q ss_pred HHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148 977 LHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 977 L~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
.+|+..|-.+...++..+..++++||+..+..++.+ |+.+|-++++..|.||+.........+-..+++..| +.
T Consensus 119 ~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s-----~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~L-l~ 192 (510)
T 3ul1_B 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-----PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL-LA 192 (510)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH-HH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHH-HH
Confidence 456666666667788888999999999999998753 899999999999999998754444444446777776 67
Q ss_pred HHhhccCc-----cc-hHHHHHHHhhCCC
Q 001148 1057 LVRNKEEG-----YF-IAAEILNKICSTH 1079 (1139)
Q Consensus 1057 ll~~k~~~-----~f-~a~~ll~~l~~~~ 1079 (1139)
++...+.. +. .++..|..+|...
T Consensus 193 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp HTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred HHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 77643311 11 2455666666544
No 96
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=87.08 E-value=1.5 Score=49.94 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=68.5
Q ss_pred hhHHhhhccHHHHHHHH-hhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc----CcchhhhhhcccchHHHHHHH
Q 001148 982 TLDMATENSQNCCEKLV-AAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR----YPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 982 ~Le~~Trls~~cCe~l~-~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak----y~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
.|-..+-+++..+..++ ..|++..+..++++.+-+ ++.+|.+.++-+|.||+. .+.....+.+ .+.|..| ++
T Consensus 194 aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~-~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~L-v~ 270 (354)
T 3nmw_A 194 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT-NTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTL-LQ 270 (354)
T ss_dssp HHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHH-HH
T ss_pred HHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc-ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHH-HH
Confidence 33333433433355666 789999999988643321 345899999999999997 5666666554 5678776 78
Q ss_pred HHhhccCccch-HHHHHHHhhC-CCchhhHHh
Q 001148 1057 LVRNKEEGYFI-AAEILNKICS-THKGVEAIS 1086 (1139)
Q Consensus 1057 ll~~k~~~~f~-a~~ll~~l~~-~~~~~~~v~ 1086 (1139)
||+..+..+.. ||..|..|+. +++..+.|.
T Consensus 271 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 302 (354)
T 3nmw_A 271 HLKSHSLTIVSNACGTLWNLSARNPKDQEALW 302 (354)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88865544444 8899999994 555444443
No 97
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=86.82 E-value=0.92 Score=45.27 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.4
Q ss_pred cchhHhhHHHHhhhHHHHHHHHHHHHHH
Q 001148 913 KHHIVLIQSYWRGCLARKASSCQLLDLR 940 (1139)
Q Consensus 913 ~~Aai~IQa~wRg~~aRK~~~~kl~~lR 940 (1139)
..++++||+.+|||++|+.++..+..++
T Consensus 45 ~~~~i~iQktvR~~L~rkkhkPRi~g~~ 72 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHKPRIDGLV 72 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4688999999999999999998777654
No 98
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=86.24 E-value=3.7 Score=48.40 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=70.7
Q ss_pred hhHHhhhc-cHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc-CcchhhhhhcccchHHHHHHHHHh
Q 001148 982 TLDMATEN-SQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR-YPHLIDVLIDSQGSVQTIMWELVR 1059 (1139)
Q Consensus 982 ~Le~~Trl-s~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak-y~~~~~~v~~~~~~v~t~~~~ll~ 1059 (1139)
.|-.++.. .+.+-..++++|++..+..++.. -++.++.+.++..|+||+. .+.....+....++|..| .+||+
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~----s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L-v~LL~ 340 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALE----VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL-VGTLT 340 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT----CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH-HHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc----CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH-HHHhc
Confidence 34334432 34455678899999999886542 2478999999999999999 545556665578999887 88887
Q ss_pred hccCc----cch-HHHHHHHhhC----CCchhhHHhh
Q 001148 1060 NKEEG----YFI-AAEILNKICS----THKGVEAISK 1087 (1139)
Q Consensus 1060 ~k~~~----~f~-a~~ll~~l~~----~~~~~~~v~~ 1087 (1139)
..++. +.. ||..|..|+. +++..+.|..
T Consensus 341 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~ 377 (458)
T 3nmz_A 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377 (458)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 54432 554 8899999885 5554454443
No 99
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.23 E-value=2.2 Score=50.37 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=74.4
Q ss_pred hHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCc-chhhhhhcccchH
Q 001148 972 SVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYP-HLIDVLIDSQGSV 1050 (1139)
Q Consensus 972 ~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~-~~~~~v~~~~~~v 1050 (1139)
+..--.+++..|-.+...++.+...+++.|++..+..++.+ ++.+|...++..|.||+... ...+.+.. .+.+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l 217 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-----GSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAM 217 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-----CCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcH
Confidence 34444556667777777778888899999999999999985 68999999999999999874 33443433 5777
Q ss_pred HHHHHHHHhhccCccch-HHHHHHHhhCCC
Q 001148 1051 QTIMWELVRNKEEGYFI-AAEILNKICSTH 1079 (1139)
Q Consensus 1051 ~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~ 1079 (1139)
..| .+++++.+..+.. +|..|..||...
T Consensus 218 ~~L-~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 218 EPI-LGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHH-HHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHH-HHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 776 6777764433443 778888888654
No 100
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=86.08 E-value=1.8 Score=46.49 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=70.9
Q ss_pred HHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcC-cchhhhhhcccchHHHHHHHH
Q 001148 979 VCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARY-PHLIDVLIDSQGSVQTIMWEL 1057 (1139)
Q Consensus 979 al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky-~~~~~~v~~~~~~v~t~~~~l 1057 (1139)
+...+...+...+.--..+++.|++..+..++.+ ++.+|-+.|+-.|.||+.. +....++.+ .++|..| ++|
T Consensus 30 Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-----~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~-~GaI~~L-v~l 102 (233)
T 3tt9_A 30 AATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-----QNEDVQRAVCGALRNLVFEDNDNKLEVAE-LNGVPRL-LQV 102 (233)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHH-HHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCCHHHH-HHH
Confidence 3334444444444445678899999998887753 6899999999999999985 555666654 6889887 788
Q ss_pred Hhh-ccCccch-HHHHHHHhhCCCchhhHH
Q 001148 1058 VRN-KEEGYFI-AAEILNKICSTHKGVEAI 1085 (1139)
Q Consensus 1058 l~~-k~~~~f~-a~~ll~~l~~~~~~~~~v 1085 (1139)
|+. .+..+-. |+..|+.|+..+..-..|
T Consensus 103 L~~~~~~~~~e~a~~aL~nLS~~~~~k~~i 132 (233)
T 3tt9_A 103 LKQTRDLETKKQITGLLWNLSSNDKLKNLM 132 (233)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcChhhHHHH
Confidence 874 5544444 778999999876644333
No 101
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=85.99 E-value=1.7 Score=51.06 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=76.2
Q ss_pred HhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhccc
Q 001148 968 LSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQ 1047 (1139)
Q Consensus 968 l~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~ 1047 (1139)
+...+..-...++..|-.++..++.|...+++.|++..++.++.. -++.+|...++.+|.||+......... ...
T Consensus 169 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~----~~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~ 243 (528)
T 4b8j_A 169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE----HTKLSMLRNATWTLSNFCRGKPQPSFE-QTR 243 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT----TCCHHHHHHHHHHHHHHHCSSSCCCHH-HHT
T ss_pred hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc----CCCHHHHHHHHHHHHHHHcCCCCCcHH-HHH
Confidence 333444444455667777778888999999999999999887632 268999999999999999985222222 246
Q ss_pred chHHHHHHHHHhhccCccch-HHHHHHHhhCCCc
Q 001148 1048 GSVQTIMWELVRNKEEGYFI-AAEILNKICSTHK 1080 (1139)
Q Consensus 1048 ~~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~~ 1080 (1139)
+++..| .++++..+..+-. +|..|..|+....
T Consensus 244 ~~l~~L-~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 244 PALPAL-ARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp THHHHH-HHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHH-HHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 777776 7777765544444 7888888886654
No 102
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=85.34 E-value=2.9 Score=49.10 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHH
Q 001148 973 VCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQT 1052 (1139)
Q Consensus 973 ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t 1052 (1139)
-.--.+|+..|..+...++.+...+++.|++..+..++.+ |+.+|...++..|.||+.........+-..+++..
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~ 206 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-----SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLP 206 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHH
Confidence 3334556667777777788889999999999999998864 68999999999999999774433333333567777
Q ss_pred HHHHHHh-hccCccc-hHHHHHHHhhCCC
Q 001148 1053 IMWELVR-NKEEGYF-IAAEILNKICSTH 1079 (1139)
Q Consensus 1053 ~~~~ll~-~k~~~~f-~a~~ll~~l~~~~ 1079 (1139)
| ++++. ..+..+. .+|..|..||...
T Consensus 207 L-l~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 207 L-LAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp H-HHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred H-HHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 6 66663 4333343 3788888888764
No 103
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=85.24 E-value=11 Score=41.77 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=76.9
Q ss_pred hHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcC-cchhhhhhcccchH
Q 001148 972 SVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARY-PHLIDVLIDSQGSV 1050 (1139)
Q Consensus 972 ~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky-~~~~~~v~~~~~~v 1050 (1139)
+.+..-.++..|-.+++..+..-+.+++.|++..+..++.+ ++.+|.+.++..|-||+.. +.....+.+ .+++
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i 211 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----QVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMV 211 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCH
Confidence 33334456667777888888877888899999999888864 7999999999999999876 445555554 6888
Q ss_pred HHHHHHHHhhccCccch-HHHHHHHhhCCC
Q 001148 1051 QTIMWELVRNKEEGYFI-AAEILNKICSTH 1079 (1139)
Q Consensus 1051 ~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~ 1079 (1139)
..| .+||..++..+-. ++..|..|+...
T Consensus 212 ~~L-v~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 212 QQL-VALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHH-HHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 887 8899877755554 778888888763
No 104
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=84.80 E-value=2.2 Score=49.74 Aligned_cols=107 Identities=12% Similarity=0.221 Sum_probs=73.7
Q ss_pred HHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHh-hhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhc
Q 001148 967 LLSMKSVCGILHVCTTLDMATENSQNCCEKLVA-AGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLID 1045 (1139)
Q Consensus 967 Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~-sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~ 1045 (1139)
+++..+...-..++..|..+....+ +...+++ .|++..+..++.+. ++.++...++..|.||++.+.....+.+
T Consensus 25 lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 99 (529)
T 1jdh_A 25 LLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT----NDVETARCTAGTLHNLSHHREGLLAIFK 99 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcC----CCHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3443444444445555555554444 3444554 58888888877642 5899999999999999999887777766
Q ss_pred ccchHHHHHHHHHhhccCc-cchHHHHHHHhhCCCc
Q 001148 1046 SQGSVQTIMWELVRNKEEG-YFIAAEILNKICSTHK 1080 (1139)
Q Consensus 1046 ~~~~v~t~~~~ll~~k~~~-~f~a~~ll~~l~~~~~ 1080 (1139)
.+.|..| .++++..+.. .+.|+..|..||.+.+
T Consensus 100 -~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~ 133 (529)
T 1jdh_A 100 -SGGIPAL-VKMLGSPVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp -TTHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHCT
T ss_pred -cCCHHHH-HHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 4888876 7888865544 3458899999988644
No 105
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=84.24 E-value=4.5 Score=45.79 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=73.8
Q ss_pred hhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCc--chhhhhhcccc
Q 001148 971 KSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYP--HLIDVLIDSQG 1048 (1139)
Q Consensus 971 k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~--~~~~~v~~~~~ 1048 (1139)
.+..--..++..|..+...++.+.+.+++.|++..+..++. +-++.+|...++..|.||+... ...... +.+
T Consensus 119 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~ 192 (450)
T 2jdq_A 119 EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS----KQNRLTMTRNAVWALSNLCRGKSPPPEFAK--VSP 192 (450)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT----SCCCHHHHHHHHHHHHHHHCCSSSCCCGGG--TGG
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc----CCCCHHHHHHHHHHHHHHhCCCCCCCCHHH--HHH
Confidence 33333345566777777777888888999999999988775 2468999999999999999875 222222 367
Q ss_pred hHHHHHHHHHhhccCccch-HHHHHHHhhCCC
Q 001148 1049 SVQTIMWELVRNKEEGYFI-AAEILNKICSTH 1079 (1139)
Q Consensus 1049 ~v~t~~~~ll~~k~~~~f~-a~~ll~~l~~~~ 1079 (1139)
.+..| .+++.+.+..+.. +|..|..||...
T Consensus 193 ~l~~L-~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 193 CLNVL-SWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp GHHHH-HHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHH-HHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 77776 7777765555544 788888888754
No 106
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=83.02 E-value=3.3 Score=50.28 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=71.8
Q ss_pred HHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcC--cchhhhhhcccchHHHHHH
Q 001148 978 HVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARY--PHLIDVLIDSQGSVQTIMW 1055 (1139)
Q Consensus 978 ~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky--~~~~~~v~~~~~~v~t~~~ 1055 (1139)
+|...|-.++......-..+++.|++..+..++++ ++.+|-+.|+..|.||+.. +....+|.+ .++|..| +
T Consensus 67 ~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-----~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~-~GaIp~L-V 139 (584)
T 3l6x_A 67 NAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-----PKKEVHLGACGALKNISFGRDQDNKIAIKN-CDGVPAL-V 139 (584)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-----SSHHHHHHHHHHHHHHTSSSCHHHHHHHHH-TTHHHHH-H
T ss_pred HHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-----CCHHHHHHHHHHHHHHHccCCHHHHHHHHH-cCCHHHH-H
Confidence 34444444444444445678899999999888764 6899999999999999986 566666665 5888887 7
Q ss_pred HHHhh-ccCccc-hHHHHHHHhhCCCchhhHH
Q 001148 1056 ELVRN-KEEGYF-IAAEILNKICSTHKGVEAI 1085 (1139)
Q Consensus 1056 ~ll~~-k~~~~f-~a~~ll~~l~~~~~~~~~v 1085 (1139)
+||+. .+..+- -++..|+.|+.+++.-..|
T Consensus 140 ~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I 171 (584)
T 3l6x_A 140 RLLRKARDMDLTEVITGTLWNLSSHDSIKMEI 171 (584)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH
Confidence 88875 443332 3778999999876644434
No 107
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.01 E-value=4.5 Score=47.00 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=65.5
Q ss_pred HHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148 977 LHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 977 L~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
..++..|...+.. +...+.+++.|++..+..++.+ ++.+|...++.+|.||+.........+-..+.|..| .+
T Consensus 78 ~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~ 150 (529)
T 1jdh_A 78 RCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS-----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM-VA 150 (529)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH-HH
T ss_pred HHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH-HH
Confidence 3444444444443 3467789999999999888754 678999999999999999854333333346778776 77
Q ss_pred HHhhccCccch-HHHHHHHhhCCC
Q 001148 1057 LVRNKEEGYFI-AAEILNKICSTH 1079 (1139)
Q Consensus 1057 ll~~k~~~~f~-a~~ll~~l~~~~ 1079 (1139)
++...+..+.. ++..|..|+...
T Consensus 151 ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 151 LLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCC
Confidence 88764433333 567788887643
No 108
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=82.77 E-value=2.3 Score=50.22 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=67.8
Q ss_pred HhhhHHhhhccHHHHHHHH-hhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc----CcchhhhhhcccchHHHHH
Q 001148 980 CTTLDMATENSQNCCEKLV-AAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR----YPHLIDVLIDSQGSVQTIM 1054 (1139)
Q Consensus 980 l~~Le~~Trls~~cCe~l~-~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak----y~~~~~~v~~~~~~v~t~~ 1054 (1139)
+..|-.++-+.+.....++ ..|++..|..++...+- .++.+|.+.++-+|.||+. .+.....+.+ .+.|..|
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~-~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~L- 384 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ-TNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTL- 384 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCS-SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHH-
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCC-cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHH-
Confidence 3334333433333345666 78999999998865432 1345899999999999996 4555555554 5677776
Q ss_pred HHHHhhccCccch-HHHHHHHhhC-CCchhhHH
Q 001148 1055 WELVRNKEEGYFI-AAEILNKICS-THKGVEAI 1085 (1139)
Q Consensus 1055 ~~ll~~k~~~~f~-a~~ll~~l~~-~~~~~~~v 1085 (1139)
++||+..+..+.. ||..|..|+. +++..+.|
T Consensus 385 v~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 417 (458)
T 3nmz_A 385 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417 (458)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888765544444 8999999994 44444433
No 109
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=81.79 E-value=6.4 Score=47.76 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=39.0
Q ss_pred hhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhh
Q 001148 982 TLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLI 1044 (1139)
Q Consensus 982 ~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~ 1044 (1139)
.|...+.-.+.++..+++.|++..+..++++.+ +.++...++.+|.||+..+...+.+.
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~----~~~~~~~a~~~L~nLs~~~~~~~~l~ 221 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSSNKPAIV 221 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC----CHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC----hHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 344444445677778888888888888776542 45666677777777776666555544
No 110
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=81.61 E-value=1.1 Score=43.59 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHccCCceecCCCCCCchhhHHHHHHhhccC
Q 001148 548 LDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 548 ~~~LL~W~q~v~~~ygv~V~NFtS~~DGraf~aLI~~~~p~ 588 (1139)
..-||.|++.++... ++-.....||-++|-|+|.+.|.
T Consensus 7 r~ElL~WIN~~L~~~---~~kiE~L~~Ga~yCqlmd~l~Pg 44 (123)
T 2qjz_A 7 RHDMLAWINESLQLN---LTKIEQLCSGAAYCQFMDMLFPG 44 (123)
T ss_dssp HHHHHHHHHHHHTCC---CCCGGGGGGSHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCC---CchHHHcCchHHHHHHHHHHccC
Confidence 466999999887531 11112679999999999999443
No 111
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=81.57 E-value=1.6 Score=43.37 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=66.9
Q ss_pred HHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHHH
Q 001148 428 FVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLL 507 (1139)
Q Consensus 428 ~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLL 507 (1139)
.++|.+|...|.+|+.|-+ ...++++++.+......++|..+-=+.++..||... |..+.+|.|...--|-++
T Consensus 26 IE~l~sGAaYCQlmD~lfg-~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k~------ipV~kLvKgk~QDNlEFl 98 (145)
T 4abo_I 26 IEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKV------VDPERLSRCKMQDNLEFV 98 (145)
T ss_dssp GGGGGGSHHHHHHHHHHHC-CSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCCC------CCHHHHTTTCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHhc-CcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCCc------cCHHHHhccchHhHHHHH
Confidence 3789999999999999994 467889999999999999999999999999999764 888999999977777665
Q ss_pred HHHHHHhh
Q 001148 508 WNMFVHLQ 515 (1139)
Q Consensus 508 W~li~~fq 515 (1139)
=.+-..|.
T Consensus 99 QWfkkf~d 106 (145)
T 4abo_I 99 QWAKRFWD 106 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 32333333
No 112
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=79.84 E-value=11 Score=47.30 Aligned_cols=95 Identities=21% Similarity=0.325 Sum_probs=64.4
Q ss_pred HHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148 977 LHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 977 L~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
..++..|..++... .....+.+.|++..+..++++ ++.+|...++.+|.||+.........+-..+.|..| .+
T Consensus 211 ~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~-----~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L-v~ 283 (780)
T 2z6g_A 211 RCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGS-----PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM-VA 283 (780)
T ss_dssp HHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH-HH
T ss_pred HHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH-HH
Confidence 33444444444433 346778889999999988754 468999999999999998754444444346778776 77
Q ss_pred HHhhccCccc-hHHHHHHHhhCC
Q 001148 1057 LVRNKEEGYF-IAAEILNKICST 1078 (1139)
Q Consensus 1057 ll~~k~~~~f-~a~~ll~~l~~~ 1078 (1139)
++...+..+- .++..|..|+..
T Consensus 284 lL~~~~~~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 284 LLNKTNVKFLAITTDCLQILAYG 306 (780)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC
Confidence 8876442333 367788888864
No 113
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=79.40 E-value=5.5 Score=48.33 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=64.9
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHH
Q 001148 976 ILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMW 1055 (1139)
Q Consensus 976 IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~ 1055 (1139)
...++..|...+... .....+++.|++..+..++.+ ++.+|...++.+|.||+.........+-..+.|..| +
T Consensus 74 ~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~L-v 146 (644)
T 2z6h_A 74 ARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGS-----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM-V 146 (644)
T ss_dssp HHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH-H
T ss_pred HHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHH-H
Confidence 344444555444443 367788899999999888754 578999999999999998754333333346778776 7
Q ss_pred HHHhhccCccch-HHHHHHHhhC
Q 001148 1056 ELVRNKEEGYFI-AAEILNKICS 1077 (1139)
Q Consensus 1056 ~ll~~k~~~~f~-a~~ll~~l~~ 1077 (1139)
++|+..+..+-. ++..|..|+.
T Consensus 147 ~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 147 ALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHCcCCHHHHHHHHHHHHHHHh
Confidence 778755432222 5578888885
No 114
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.40 E-value=1.7 Score=44.08 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHccCCceecCCCCCCchhhHHHHHHhhccC
Q 001148 547 LLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv~V~NFtS~~DGraf~aLI~~~~p~ 588 (1139)
...-||.|++.++.. +++-.....||-++|-|+|.+.|.
T Consensus 23 sr~ElL~WIN~~L~~---~~~kiE~L~~GaayCQLmd~L~Pg 61 (159)
T 1wyo_A 23 SRHDMLAWVNDSLHL---NYTKIEQLCSGAAYCQFMDMLFPG 61 (159)
T ss_dssp CHHHHHHHHHHHSCC---CCSSGGGGGGCHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHCC---CCchhhhcCccHHHHHHHHHHccC
Confidence 456799999987643 111112689999999999999554
No 115
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=77.18 E-value=3.7 Score=44.88 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=65.8
Q ss_pred HHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHHH
Q 001148 428 FVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSLL 507 (1139)
Q Consensus 428 ~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgLL 507 (1139)
.+||.+|...|.+|+.|-++...++++++.+......++|..+-=+.++..||... |..+.+|.|...--|-++
T Consensus 35 iEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k~------ipV~kLvkgk~qDNlEFl 108 (268)
T 2r8u_A 35 IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI------IPVDKLVKGKFQDNFEFV 108 (268)
T ss_dssp GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCCC------CCHHHHTTTCHHHHHHHH
T ss_pred HHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCCc------cCHHHHhccCchhHHHHH
Confidence 37899999999999999988778889999999999999999999999999998753 889999999977777654
No 116
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=77.02 E-value=11 Score=42.44 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=64.6
Q ss_pred HHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcch-hhhhhcccchHHHHHHHH
Q 001148 979 VCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHL-IDVLIDSQGSVQTIMWEL 1057 (1139)
Q Consensus 979 al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~-~~~v~~~~~~v~t~~~~l 1057 (1139)
++..|..++...+...+.++..|++..+..++. -++.+|...++..|.||+..... .+.+++ .+.+..| .++
T Consensus 212 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L-~~l 284 (450)
T 2jdq_A 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-----HNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSL-LHL 284 (450)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHH-HHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC-----CCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHH-HHH
Confidence 344455555555566677888999999998875 36789999999999999986543 333333 4667665 777
Q ss_pred HhhccCccc-hHHHHHHHhhCC
Q 001148 1058 VRNKEEGYF-IAAEILNKICST 1078 (1139)
Q Consensus 1058 l~~k~~~~f-~a~~ll~~l~~~ 1078 (1139)
+.+.+..+- .||..|..|+..
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~ 306 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAG 306 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcC
Confidence 775443333 488888888863
No 117
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=76.59 E-value=1.5 Score=55.01 Aligned_cols=29 Identities=28% Similarity=0.582 Sum_probs=24.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001148 730 LPGNAAKVIKFHFRGWIERRNFLKMRNAA 758 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr~y~~~R~a~ 758 (1139)
+.+.+|+.||++||||++|++|.++|+++
T Consensus 766 ~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 766 KLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999863
No 118
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.85 E-value=1.6 Score=42.70 Aligned_cols=45 Identities=27% Similarity=0.475 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHccCCceecCCC-CCCchhhHHHHHHhhccCCCCCCCccccccch
Q 001148 547 LLDLLLNWIQVICEKYDFRINNFS-SLTDGKAIWCLLDFYFRKEPCGSCTSKVLQMS 602 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv~V~NFt-S~~DGraf~aLI~~~~p~~~lg~~~P~ll~~~ 602 (1139)
....|+.|++.+ .-..++.|+. +|+||..+.-|+++| .|.+++..
T Consensus 16 e~~el~~WL~~l--~Ls~~~rn~rRDFSdG~lvAEIl~~y---------~Pk~Vdlh 61 (127)
T 2ee7_A 16 ALHQLYLWVDNI--PLSRPKRNLSRDFSDGVLVAEVIKFY---------FPKMVEMH 61 (127)
T ss_dssp HHHHHHHHHHHS--CCSCCSSCHHHHHTTSHHHHHHHHHH---------CTTTCCCS
T ss_pred HHHHHHHHHHcC--CCCCCCCchhhhccchhHHHHHHHHH---------CcCccccc
Confidence 346789999932 2244788998 999999999999999 56665544
No 119
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=75.05 E-value=2.7 Score=54.40 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhccchhHhhHHHHhhhHHHHHH
Q 001148 889 KTKSAIIIQSHIRGWTARRRAYKEKHHIVLIQSYWRGCLARKAS 932 (1139)
Q Consensus 889 ~~~AAi~IQs~~Rg~laRr~~~~~~~Aai~IQa~wRg~~aRK~~ 932 (1139)
...+|+.|| .+|||++|++|++.+.+++.||.+||++..|+..
T Consensus 774 ~~~~~~~iq-~~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVK-RVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445666666 4688888888888888888888888887655543
No 120
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=73.50 E-value=3.8 Score=39.96 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=60.1
Q ss_pred HHHhhhHHHHHHHHHHhcCCCccccccccCCCCchhHHhhHHHHHHHHHHcCCcccCCCCCccccccccCCCccchhHH
Q 001148 428 FVDLQDGVRLGRIVQLLLQDSSILTKIVVPSDTHRKNSVNCSIALQYLRQAGVKLYDEDGTAIMEDDVANGDKELILSL 506 (1139)
Q Consensus 428 ~~DLrDGv~L~rLlElL~~~~~~~~kl~~p~~~R~~ki~Nv~~AL~~lk~~gi~l~~~~g~~I~a~DIVdG~~k~tLgL 506 (1139)
.+|+.+|...|.+++.+-++ ...+++++++......++|-.+-=+.+...||... |..+.+|.|...--|-+
T Consensus 30 iEel~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~k~------ipV~kLvKgrfQDNlEF 101 (127)
T 2qjx_A 30 IEECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNYKILQSCFSRHGIEKT------VYVDKLIRCKFQDNLEF 101 (127)
T ss_dssp GGGGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCCCC------CCHHHHTTTCHHHHHHH
T ss_pred HHHccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc------cCHHHHhccCchhHHHH
Confidence 47789999999999999965 66788888999999999999999999999998743 77888888885554443
No 121
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=70.48 E-value=11 Score=46.11 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHh
Q 001148 955 RIINRLVSALRELLSMKSVCGILHVCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLA 1034 (1139)
Q Consensus 955 kl~~Rl~~AL~~Ll~~k~ls~IL~al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nla 1034 (1139)
+|+.|++.+ .-+.+=..|+..|....+-.+. .|.++|...+.. .+-+-..|-|+++.++.+|+|+-
T Consensus 25 ~L~~Rl~~~-------tl~eDRR~Av~~Lk~~sk~y~~----~Vg~~~l~~li~---~L~~d~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 25 KLCDRVASS-------TLLDDRRNAVRALKSLSKKYRL----EVGIQAMEHLIH---VLQTDRSDSEIIGYALDTLYNII 90 (651)
T ss_dssp HHHHHHHHC-------CSHHHHHHHHHHHHHTTTTTTT----HHHHHTHHHHHH---HHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-------cchhHHHHHHHHHHHHHHHhHH----HhhhhhHHHHHH---HHhcccccHHHHHHHHHHHHHHh
Confidence 366676554 2233334444455444444333 556666666655 55566789999999999999986
Q ss_pred cCcc------------------hhhhhhcccchHHHHHHHHHhhccCc-cchHHHHHHHhhCCCch--hhHHhhChHHHH
Q 001148 1035 RYPH------------------LIDVLIDSQGSVQTIMWELVRNKEEG-YFIAAEILNKICSTHKG--VEAISKLPAHLK 1093 (1139)
Q Consensus 1035 ky~~------------------~~~~v~~~~~~v~t~~~~ll~~k~~~-~f~a~~ll~~l~~~~~~--~~~v~~~p~~~~ 1093 (1139)
--.. .++.+...++.|.+| ++||.+.+-. -+-|..+|..||.+... .+.|...|..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~L-l~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~ 169 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLL-LSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHH-HHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH
Confidence 5332 223444567777665 7888654422 22378999999976554 467888998888
Q ss_pred HHHHHH
Q 001148 1094 RLNSLV 1099 (1139)
Q Consensus 1094 rl~sl~ 1099 (1139)
+|.++.
T Consensus 170 ~Lv~lL 175 (651)
T 3grl_A 170 RLMDLL 175 (651)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 876443
No 122
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=69.27 E-value=2 Score=53.95 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001148 804 GIKAALKIQSSWRNFIASRSLQKNYFAA 831 (1139)
Q Consensus 804 ~~~AAi~IQ~~~Rg~laRr~y~r~r~AA 831 (1139)
...+|+.||++||||++|++|.+++.|+
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568899999999999999998888764
No 123
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=66.41 E-value=32 Score=42.98 Aligned_cols=96 Identities=11% Similarity=0.230 Sum_probs=65.5
Q ss_pred HHHhhhHHhhhccHHHHHHHHhh-hhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHH
Q 001148 978 HVCTTLDMATENSQNCCEKLVAA-GAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 978 ~al~~Le~~Trls~~cCe~l~~s-gAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
.|+..|-.+.... .+...++.. |++..|..+++.- ++.++-..++..|.||++.+.....+.+ .+.|..| ++
T Consensus 169 ~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~L-v~ 241 (780)
T 2z6g_A 169 KAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNT----NDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPAL-VN 241 (780)
T ss_dssp HHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHH-HH
T ss_pred HHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCC----CCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHH-HH
Confidence 3444444444332 234455543 7888887777532 4899999999999999999877666665 4888877 78
Q ss_pred HHhhccCc-cchHHHHHHHhhCCCc
Q 001148 1057 LVRNKEEG-YFIAAEILNKICSTHK 1080 (1139)
Q Consensus 1057 ll~~k~~~-~f~a~~ll~~l~~~~~ 1080 (1139)
+|+..+.. .+.|+..|..||.+..
T Consensus 242 lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 242 MLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 88865543 4458888888887643
No 124
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=61.29 E-value=5.9 Score=40.00 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHccCCc-eecCCC-CCCchhhHHHHHHhhccCC
Q 001148 546 ALLDLLLNWIQVICEKYDF-RINNFS-SLTDGKAIWCLLDFYFRKE 589 (1139)
Q Consensus 546 ~~~~~LL~W~q~v~~~ygv-~V~NFt-S~~DGraf~aLI~~~~p~~ 589 (1139)
...+-+..|+..++..- + .-.+|- +.+||.+||.|+|.+.|..
T Consensus 11 ~~~~e~~~WIe~~l~~~-l~~~~~l~~~LkdGvvLCkL~N~l~P~~ 55 (159)
T 1p2x_A 11 CRVDEAKKWIEECLGTD-LGPTSTFEQSLRNGVVLALLVQKFQPDK 55 (159)
T ss_dssp HHHHHHHHHHHHHHTSC-CCCGGGHHHHTTTSHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHhCCC-CCChHHHHHHHcchHHHHHHHHHhCCCC
Confidence 34567899999987532 2 234786 8999999999999998863
No 125
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=60.32 E-value=19 Score=45.46 Aligned_cols=92 Identities=12% Similarity=0.093 Sum_probs=66.5
Q ss_pred HHhhhHHhhhccHHHHHHHHh-hhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhc-CcchhhhhhcccchHHHHHHH
Q 001148 979 VCTTLDMATENSQNCCEKLVA-AGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLAR-YPHLIDVLIDSQGSVQTIMWE 1056 (1139)
Q Consensus 979 al~~Le~~Trls~~cCe~l~~-sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlak-y~~~~~~v~~~~~~v~t~~~~ 1056 (1139)
|+..+-.++. ++.+...+++ .|++..+..++.+ ++.++-+.|+..|.||+- .+...+++++..+++..| .+
T Consensus 643 A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s-----~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~L-v~ 715 (810)
T 3now_A 643 AAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCED-----EDEETATACAGALAIITSVSVKCCEKILAIASWLDIL-HT 715 (810)
T ss_dssp HHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGC-----SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHH-HH
T ss_pred HHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHH-HH
Confidence 3333333333 3445566665 6888877777653 689999999999999999 688889998878999887 79
Q ss_pred HHhhccCccc-hHHHHHHHhhC
Q 001148 1057 LVRNKEEGYF-IAAEILNKICS 1077 (1139)
Q Consensus 1057 ll~~k~~~~f-~a~~ll~~l~~ 1077 (1139)
|+++.+..+- .||..|..|+.
T Consensus 716 LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 716 LIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHh
Confidence 9987665544 37766666654
No 126
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=60.24 E-value=17 Score=44.39 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=79.3
Q ss_pred HHhhhHHhhhccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHH
Q 001148 979 VCTTLDMATENSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELV 1058 (1139)
Q Consensus 979 al~~Le~~Trls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll 1058 (1139)
++--|-.+|+.++.+..-++-.||.+.+|.+|++=.- +..=+|++.++.+|.||.+|+..-+..+-..+++..| ..||
T Consensus 186 allLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~-~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L-~~LL 263 (651)
T 3grl_A 186 GVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN-SDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRM-KPWF 263 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG-GGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGG-GGGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC-CccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH-HHHh
Confidence 4446778899999988888888999999999987764 5677999999999999999998888877766777665 3455
Q ss_pred hhccCccc----------hHHHHHHHhhCCCchhhHHhhChHHHH
Q 001148 1059 RNKEEGYF----------IAAEILNKICSTHKGVEAISKLPAHLK 1093 (1139)
Q Consensus 1059 ~~k~~~~f----------~a~~ll~~l~~~~~~~~~v~~~p~~~~ 1093 (1139)
..+++.++ .+-.++..|+...........+.+.+.
T Consensus 264 ~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~ 308 (651)
T 3grl_A 264 EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF 308 (651)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 43333222 012566666665444333334444443
No 127
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=58.72 E-value=5.8 Score=39.40 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHccC-C---ceecCCC-CCCchhhHHHHHHhhcc
Q 001148 546 ALLDLLLNWIQVICEKY-D---FRINNFS-SLTDGKAIWCLLDFYFR 587 (1139)
Q Consensus 546 ~~~~~LL~W~q~v~~~y-g---v~V~NFt-S~~DGraf~aLI~~~~p 587 (1139)
..++.+..|++.++... + -..++|- ..+||.+||.|+|.+.|
T Consensus 9 ~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P 55 (144)
T 1ujo_A 9 ELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYP 55 (144)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCc
Confidence 34577999999987542 2 1236786 89999999999999966
No 128
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=58.14 E-value=6.4 Score=40.16 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 001148 730 LPGNAAKVIKFHFRGWIERRNFLK 753 (1139)
Q Consensus 730 ~~~~AAi~IQs~~Rg~laRr~y~~ 753 (1139)
....||++||++||+|+.|+.+.+
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 457799999999999998877654
No 129
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=54.10 E-value=15 Score=40.20 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHccCCceecCCCCCCchhhHHHHHHhhcc
Q 001148 547 LLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFR 587 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv~V~NFtS~~DGraf~aLI~~~~p 587 (1139)
...-||.|+|..+..-=-+|+ ...+|-++|-|+|.+.|
T Consensus 16 sR~elL~WiN~~L~~~~~kiE---el~tGaayCQlmd~l~P 53 (268)
T 2r8u_A 16 SRHDMLAWINESLQLNLTKIE---QLCSGAAYCQFMDMLFP 53 (268)
T ss_dssp CHHHHHHHHHHHHTCCCCCGG---GGGGSHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHhcCCcchHH---HcccchHHHHHHHHHcc
Confidence 356799999988764211222 67899999999999943
No 130
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=53.93 E-value=6.9 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHccCCceecCCC-CCCchhhHHHHHHhhccC
Q 001148 547 LLDLLLNWIQVICEKYDFRINNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv~V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
.++.+..|++.++..- + -.||- +.+||.+||.|+|.+.|.
T Consensus 18 ~~~e~~~WIe~~l~~~-~-~~~l~~~L~DGvvLCkL~N~l~P~ 58 (136)
T 1wyp_A 18 REQELREWIEGVTGRR-I-GNNFMDGLKDGIILCEFINKLQPG 58 (136)
T ss_dssp HHHHHHHHHHHHTCCC-C-CSCTTHHHHTSHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCC-C-cHHHHHHHccHHhHHHHHHhhCCC
Confidence 3578999999887532 2 25787 899999999999999665
No 131
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=53.53 E-value=28 Score=39.87 Aligned_cols=103 Identities=15% Similarity=0.248 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHhhcCC------CCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhccCccc-hHHHHH
Q 001148 1000 AGAVDTLLKLIGSVSRS------MPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYF-IAAEIL 1072 (1139)
Q Consensus 1000 sgAv~~i~~lir~~NRS------vp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k~~~~f-~a~~ll 1072 (1139)
.++...|+..+..+|.. ..+.+.-..++.-|..|-.+......|++.+++|.+|..- +-.+.-.+. .+..||
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~-L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRA-MDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHT-CCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHH-hCCCchHHHHHHHHHH
Confidence 45667778877777633 3467888999999999999999999999999999887433 332222222 367999
Q ss_pred HHhhCCCc---hhhHHhhChHHH------HHHHHHHHHHh
Q 001148 1073 NKICSTHK---GVEAISKLPAHL------KRLNSLVDELT 1103 (1139)
Q Consensus 1073 ~~l~~~~~---~~~~v~~~p~~~------~rl~sl~~l~~ 1103 (1139)
..+|..++ |++.|..--... .|...|++.+.
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99998765 466554333322 24445555554
No 132
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=52.90 E-value=9.1 Score=39.07 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHhhHHHHHHH
Q 001148 888 LKTKSAIIIQSHIRGWTARRRA 909 (1139)
Q Consensus 888 ~~~~AAi~IQs~~Rg~laRr~~ 909 (1139)
+...||.+||++||+|+.|+..
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~ 149 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSL 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3455666677776666665543
No 133
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=52.41 E-value=5.5 Score=40.48 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHHHHccCCceecCCCCCCchhhHHHHHHhhccC
Q 001148 544 DSALLDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 544 ~~~~~~~LL~W~q~v~~~ygv~V~NFtS~~DGraf~aLI~~~~p~ 588 (1139)
+....+.|+.|+|... ...++++|.++.||.+|..+++.+-|.
T Consensus 7 ~~~~~~aLl~W~~tf~--~~~~~~~~~dL~DG~~L~~iL~~IDp~ 49 (164)
T 1wix_A 7 GLPLCDSLIIWLQTFK--TASPCQDVKQLTNGVTMAQVLHQIDVA 49 (164)
T ss_dssp SCHHHHHHHHHHTTCC--CSSCCCSHHHHTTSHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHcC--CCCCcCcHHHhccHHHHHHHHHHhCcc
Confidence 3455688999998421 234777887999999999999999443
No 134
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=52.11 E-value=56 Score=40.91 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=85.6
Q ss_pred HHHHHhhhHHhhhcc----HHHHHHHHhh-hhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchh-hhhhccc--
Q 001148 976 ILHVCTTLDMATENS----QNCCEKLVAA-GAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLI-DVLIDSQ-- 1047 (1139)
Q Consensus 976 IL~al~~Le~~Trls----~~cCe~l~~s-gAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~-~~v~~~~-- 1047 (1139)
..+|+..|-.....+ ...+.+++.. ||+..|..++.+ .+..|-+.|+..+-||+..+... ..+++.+
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-----~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD-----ENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-----SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-----CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 345555544444444 2345778885 999999998875 45678889999999999988865 5666544
Q ss_pred ch---HHHHHHHHHhhccCccch-HHHHHHHhh-CCCchhhHHhhChHHHHHHHHHHHHH
Q 001148 1048 GS---VQTIMWELVRNKEEGYFI-AAEILNKIC-STHKGVEAISKLPAHLKRLNSLVDEL 1102 (1139)
Q Consensus 1048 ~~---v~t~~~~ll~~k~~~~f~-a~~ll~~l~-~~~~~~~~v~~~p~~~~rl~sl~~l~ 1102 (1139)
.+ ++.| +.|++..|...-. |+..|+.|+ .++.-++.+...+..++.+-.+.+..
T Consensus 651 ~~~~rL~lL-V~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 651 QSLRNFNIL-VKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp HHHHHHHHH-HHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhccHHHH-HHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc
Confidence 22 5555 7888776644444 789999996 46666788888888888777777664
No 135
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=48.57 E-value=6.1 Score=41.20 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHHHHccCCce-ecCCC-CCCchhhHHHHHHhhccC
Q 001148 544 DSALLDLLLNWIQVICEKYDFR-INNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 544 ~~~~~~~LL~W~q~v~~~ygv~-V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
+....+-+..|++.++.. .++ ..||- +.+||.+||.|+|.+.|.
T Consensus 45 yl~~~~e~~~WIe~~lg~-~l~~~~~l~~~LrdGvvLCkL~N~l~Pg 90 (193)
T 3i6x_A 45 YLCHLEEAKRWMEACLGE-DLPPTTELEEGLRNGVYLAKLGNFFSPK 90 (193)
T ss_dssp HHHHHHHHHHHHHHHHSS-CCCCGGGHHHHHTTSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhCC-CCCChHHHHHHhccHHHHHHHHHHHCCC
Confidence 344566789999998764 222 35787 899999999999999665
No 136
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=48.22 E-value=5.6 Score=37.46 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHccCCceecCCC-CCCchhhHHHHHHhhccC
Q 001148 549 DLLLNWIQVICEKYDFRINNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 549 ~~LL~W~q~v~~~ygv~V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
+.+..|++.++... + -.||- +.+||.+||.|+|.+.|.
T Consensus 6 ~e~~~WIe~~l~~~-~-~~~l~~~L~dGvvLCkL~N~l~P~ 44 (108)
T 1h67_A 6 RQLRVWIEGATGRR-I-GDNFMDGLKDGVILCELINKLQPG 44 (108)
T ss_dssp HHHHHHHHHHHSCC-C-CSCHHHHHHHCSHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCC-C-cHHHHHHHccHHHHHHHHHHhCCC
Confidence 45889999887532 2 25776 889999999999999664
No 137
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=46.59 E-value=8.3 Score=40.52 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHccCCc-eecCCC-CCCchhhHHHHHHhhccC
Q 001148 546 ALLDLLLNWIQVICEKYDF-RINNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 546 ~~~~~LL~W~q~v~~~ygv-~V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
...+.+..|++.++..- + ...||- ..+||.+||.|+|.+.|.
T Consensus 55 ~~~~e~~~WIe~~l~~~-l~~~~~f~~~LrDGvvLCkLiN~l~P~ 98 (203)
T 1p5s_A 55 CRVDEAKKWIEECLGTD-LGPTSTFEQSLRNGVVLALLVQKFQPD 98 (203)
T ss_dssp HHHHHHHHHHHHHHTSC-CCCGGGHHHHHTTSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC-CCChHHHHHHHcchHHHHHHHHHhCCC
Confidence 34677999999987532 2 345886 899999999999999775
No 138
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=46.49 E-value=6.9 Score=38.94 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHccCCceecCCC-CCCchhhHHHHHHhhccC
Q 001148 547 LLDLLLNWIQVICEKYDFRINNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv~V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
..+.+..|++.++... + -.+|- +.+||.+||.|+|.+.|.
T Consensus 18 ~~~e~~~WIe~~l~~~-i-~~~l~~~L~DGvvLCkL~N~l~P~ 58 (146)
T 1wyn_A 18 KEAELRTWIEGLTGLS-I-GPDFQKGLKDGTILCTLMNKLQPG 58 (146)
T ss_dssp HHHHHHHHHHHHHCCC-C-CSCHHHHHHTTSHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC-C-cHHHHHHHccHHHHHHHHHHhCCC
Confidence 4578999999987532 2 25776 889999999999999765
No 139
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=45.56 E-value=51 Score=34.88 Aligned_cols=86 Identities=13% Similarity=0.234 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHhhcCC------CCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhccCcc-chHHHHH
Q 001148 1000 AGAVDTLLKLIGSVSRS------MPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGY-FIAAEIL 1072 (1139)
Q Consensus 1000 sgAv~~i~~lir~~NRS------vp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k~~~~-f~a~~ll 1072 (1139)
.|++..++..+..++.. ..+.+....++.-|..|-.+....+.|.+.+++|..|..- +..+.-.. -.+..||
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~-L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRA-MDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTT-CCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHH-hCCCCchHHHHHHHHH
Confidence 35666777777665432 2267888889999999999999999999999999777433 32222111 1256888
Q ss_pred HHhhCCCc--h-hhHHh
Q 001148 1073 NKICSTHK--G-VEAIS 1086 (1139)
Q Consensus 1073 ~~l~~~~~--~-~~~v~ 1086 (1139)
..+|-.++ | ++.|.
T Consensus 121 ~~lc~~~~~~G~~~~VL 137 (233)
T 2f31_A 121 SALCILPQPEDMNERVL 137 (233)
T ss_dssp HHHHTCSSSSCHHHHHH
T ss_pred HHHHhCCCCCChHHHHH
Confidence 88998765 6 66554
No 140
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=44.25 E-value=44 Score=41.80 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=66.1
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhccCc---c
Q 001148 989 NSQNCCEKLVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEG---Y 1065 (1139)
Q Consensus 989 ls~~cCe~l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k~~~---~ 1065 (1139)
...-.|..+.++|++..+..+..+ ++.++-+.++.+|.||+..+.....+.+ .+++..| ++++.+..+. .
T Consensus 445 v~~~~~~~l~eaGvIp~Lv~Ll~S-----~s~~~re~A~~aL~nLS~d~~~R~~lvq-qGal~~L-L~lL~s~~~~~~~~ 517 (778)
T 3opb_A 445 ILLFNEKYILRTELISFLKREMHN-----LSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKII-LEYLANKQDIGEPI 517 (778)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHGGG-----SCHHHHHHHHHHHHHHHTSGGGHHHHHH-TTHHHHH-HHHTTCC---CCHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHH-HHHHhcCCCcchHH
Confidence 333467889999999999876654 6789999999999999999999888876 6888876 7888754321 3
Q ss_pred c-hHHHHHHHhhCCCchhh
Q 001148 1066 F-IAAEILNKICSTHKGVE 1083 (1139)
Q Consensus 1066 f-~a~~ll~~l~~~~~~~~ 1083 (1139)
- .|+.-|..|+-+.+..-
T Consensus 518 k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHhcCCHHH
Confidence 3 47788888876555443
No 141
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=40.33 E-value=68 Score=36.69 Aligned_cols=85 Identities=12% Similarity=0.229 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhhcCC------CCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhccCccc-hHHHHHH
Q 001148 1001 GAVDTLLKLIGSVSRS------MPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYF-IAAEILN 1073 (1139)
Q Consensus 1001 gAv~~i~~lir~~NRS------vp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k~~~~f-~a~~ll~ 1073 (1139)
++...|+..+..++.. ..+.+....++.-|..|-.+......|+..+++|..|..- +..+.-..- .+..||.
T Consensus 47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~s-L~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRA-MDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHT-CCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHH-hCCCCchHHHHHHHHHH
Confidence 5566677777655432 2377888889999999999999999999999999776333 322221111 2557889
Q ss_pred HhhCCCc--h-hhHHh
Q 001148 1074 KICSTHK--G-VEAIS 1086 (1139)
Q Consensus 1074 ~l~~~~~--~-~~~v~ 1086 (1139)
.+|-.+. | ++.|.
T Consensus 126 alc~~~~~~G~~~~VL 141 (386)
T 2bnx_A 126 ALCILPQPEDMNERVL 141 (386)
T ss_dssp HHHTCCSSTTHHHHHH
T ss_pred HHHcCCCCCChHHHHH
Confidence 9998765 5 66554
No 142
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=37.62 E-value=7 Score=39.26 Aligned_cols=40 Identities=30% Similarity=0.597 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHccCCcee-----cCCC-CCCchhhHHHHHHhhcc
Q 001148 547 LLDLLLNWIQVICEKYDFRI-----NNFS-SLTDGKAIWCLLDFYFR 587 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~ygv~V-----~NFt-S~~DGraf~aLI~~~~p 587 (1139)
..+.+..|++.++... +.. .+|- ..+||.+||.|+|.+.|
T Consensus 18 ~e~e~~~WIe~~l~~~-l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P 63 (155)
T 1wym_A 18 LEQILIQWITTQCRKD-VGRPQPGRENFQNWLKDGTVLCELINALYP 63 (155)
T ss_dssp HHHHHHHHHHHHSSSC-CCCCCSSHHHHHHHHHTSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCC-CCCCcccHHHHHHHHcchHHHHHHHHHhcc
Confidence 3568999999886532 222 4776 89999999999999966
No 143
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=36.10 E-value=8.3 Score=40.04 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHHHHccCCce-ecCCC-CCCchhhHHHHHHhhccC
Q 001148 545 SALLDLLLNWIQVICEKYDFR-INNFS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 545 ~~~~~~LL~W~q~v~~~ygv~-V~NFt-S~~DGraf~aLI~~~~p~ 588 (1139)
....+.+..|+..++.. .++ ..||- ..+||.+||.|+|.+.|.
T Consensus 24 ~~~~~e~~~WIe~~lg~-~lp~~~~f~~~LrDGvvLCkL~N~l~P~ 68 (190)
T 2rr8_A 24 LCHLEEAKRWMEACLGE-DLPPTTELEEGLRNGVYLAKLGNFFSPK 68 (190)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCHHHHHHHHSSHHHHHHHHHHSCTT
T ss_pred cHHHHHHHHHHHHHhCC-CCCChhHHHHHHcchhhHHHHHHHhCCC
Confidence 34457899999987643 222 35786 899999999999999665
No 144
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=32.06 E-value=12 Score=36.25 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHccC--C---ceecCC-C-CCCchhhHHHHHHhhccC
Q 001148 547 LLDLLLNWIQVICEKY--D---FRINNF-S-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~y--g---v~V~NF-t-S~~DGraf~aLI~~~~p~ 588 (1139)
..+.+..|++.++... + ..-.+| . +.+||.+||.|+|.+.|.
T Consensus 13 ~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg 61 (126)
T 2l3g_A 13 SAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPG 61 (126)
T ss_dssp HHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCC
Confidence 4677899999875411 1 133456 5 889999999999999664
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=30.99 E-value=2.5e+02 Score=31.59 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=54.3
Q ss_pred HHhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhhcccchHHHHHHHHHhhccCccch-HHHHHHHh
Q 001148 997 LVAAGAVDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLIDSQGSVQTIMWELVRNKEEGYFI-AAEILNKI 1075 (1139)
Q Consensus 997 l~~sgAv~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~~~~~~v~t~~~~ll~~k~~~~f~-a~~ll~~l 1075 (1139)
-++.+++..|...+... +.+...|++.-|.+|--|......|...+..|.-| .-|+..++..+-. |=.||..+
T Consensus 156 FI~~~GL~~Li~vi~~~-----~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~l-yslv~s~~~~V~k~AL~LL~v~ 229 (339)
T 3dad_A 156 FVHSEGLSCLIRVGAAA-----DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWL-YTLCASLSRLVVKTALKLLLVF 229 (339)
T ss_dssp HHHTTHHHHHHHHHTTS-----CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHH-HHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhc-----ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHH-HHHHcCccHHHHHHHHHHHHHH
Confidence 56777788888877543 99999999999999999988888887766666554 3333333222222 33788888
Q ss_pred hCCCc
Q 001148 1076 CSTHK 1080 (1139)
Q Consensus 1076 ~~~~~ 1080 (1139)
|...+
T Consensus 230 V~~se 234 (339)
T 3dad_A 230 VEYSE 234 (339)
T ss_dssp HHHCG
T ss_pred HccCc
Confidence 87653
No 146
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=30.32 E-value=40 Score=33.49 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHccCCceecCCCCCCchhhHHHHHHhhccC
Q 001148 548 LDLLLNWIQVICEKYDFRINNFSSLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 548 ~~~LL~W~q~v~~~ygv~V~NFtS~~DGraf~aLI~~~~p~ 588 (1139)
..-||.|+|..+..-=-+|+ ...+|-|+|-|+|.+.|.
T Consensus 8 R~eLL~WiN~~L~~n~tkIE---~l~sGAaYCQlmD~lfg~ 45 (145)
T 4abo_I 8 RQELLAWINQVTSLGLTRIE---DCGKGYAMIQIFDSIYQD 45 (145)
T ss_dssp HHHHHHHHHHHHTCCCCSGG---GGGGSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCcchHH---HccccHHHHHHHHHHhcC
Confidence 46699999988754111222 678999999999999543
No 147
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=28.57 E-value=13 Score=35.81 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHccC--Cc---eecC-CC-CCCchhhHHHHHHhhccC
Q 001148 547 LLDLLLNWIQVICEKY--DF---RINN-FS-SLTDGKAIWCLLDFYFRK 588 (1139)
Q Consensus 547 ~~~~LL~W~q~v~~~y--gv---~V~N-Ft-S~~DGraf~aLI~~~~p~ 588 (1139)
..+.+..|++.+.... +. .-.+ |- ..+||.+||.|+|.+.|.
T Consensus 7 ~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg 55 (121)
T 1wyr_A 7 GEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPG 55 (121)
T ss_dssp SHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCC
Confidence 3567899999875321 11 1234 34 789999999999999664
No 148
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=20.08 E-value=2.7e+02 Score=31.33 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCcchhhhhh-------cccch---HHHHHHHHHhhccCc---cch-H
Q 001148 1003 VDTLLKLIGSVSRSMPDQEVLKHALSTLRNLARYPHLIDVLI-------DSQGS---VQTIMWELVRNKEEG---YFI-A 1068 (1139)
Q Consensus 1003 v~~i~~lir~~NRSvp~~eVl~~al~vL~nlaky~~~~~~v~-------~~~~~---v~t~~~~ll~~k~~~---~f~-a 1068 (1139)
|..|+.+ +| | +...|++.|+.+|.++.-|......++ +.++. .++| ..+|++||.+ +-+ |
T Consensus 204 I~~lysl---v~-s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~L-v~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 204 IQWLYTL---CA-S-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANL-VSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHHHHHG---GG-C-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHH-HHHHTTTTSCCHHHHHHH
T ss_pred HHHHHHH---Hc-C-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHH-HHHHhccCCCCHHHHHHH
Confidence 4455554 44 4 679999999999999988864332221 12222 4565 7888888754 333 4
Q ss_pred HHHHHHhhCC
Q 001148 1069 AEILNKICST 1078 (1139)
Q Consensus 1069 ~~ll~~l~~~ 1078 (1139)
=+|+..++..
T Consensus 278 mtLIN~lL~~ 287 (339)
T 3dad_A 278 VTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5777777654
Done!