Query 001149
Match_columns 1138
No_of_seqs 663 out of 2791
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 17:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1015 Transcription regulato 100.0 7E-164 1E-168 1415.4 54.6 939 147-1135 447-1512(1567)
2 KOG1016 Predicted DNA helicase 100.0 1E-110 2E-115 955.9 36.7 667 356-1048 228-960 (1387)
3 KOG0387 Transcription-coupled 100.0 3E-104 6E-109 919.1 43.2 497 370-962 193-702 (923)
4 KOG0385 Chromatin remodeling c 100.0 4.1E-93 9E-98 820.9 48.3 483 375-963 159-648 (971)
5 KOG0392 SNF2 family DNA-depend 100.0 2.6E-87 5.7E-92 800.0 44.4 521 359-962 952-1500(1549)
6 KOG0389 SNF2 family DNA-depend 100.0 3.5E-84 7.6E-89 750.2 41.4 511 375-943 390-913 (941)
7 PLN03142 Probable chromatin-re 100.0 1.3E-82 2.7E-87 796.5 52.6 481 374-962 161-645 (1033)
8 KOG0384 Chromodomain-helicase 100.0 2.6E-84 5.6E-89 779.6 34.7 481 381-963 369-862 (1373)
9 KOG0390 DNA repair protein, SN 100.0 9E-83 2E-87 763.4 44.4 515 371-963 227-753 (776)
10 KOG0391 SNF2 family DNA-depend 100.0 1.6E-82 3.5E-87 747.9 39.1 542 369-961 602-1431(1958)
11 KOG0388 SNF2 family DNA-depend 100.0 1.7E-80 3.7E-85 705.2 39.1 512 370-942 555-1178(1185)
12 KOG0386 Chromatin remodeling c 100.0 1.4E-79 3.1E-84 726.4 33.1 496 363-952 374-872 (1157)
13 KOG4439 RNA polymerase II tran 100.0 1.9E-72 4.2E-77 644.2 33.5 533 371-959 314-901 (901)
14 KOG1002 Nucleotide excision re 100.0 8.5E-72 1.8E-76 615.5 33.4 543 371-958 173-790 (791)
15 COG0553 HepA Superfamily II DN 100.0 3.5E-62 7.6E-67 632.1 38.3 504 377-959 333-865 (866)
16 KOG1000 Chromatin remodeling p 100.0 9.8E-56 2.1E-60 490.1 33.8 428 375-941 191-626 (689)
17 PRK04914 ATP-dependent helicas 100.0 2.2E-53 4.9E-58 532.1 29.9 451 379-957 149-644 (956)
18 KOG1001 Helicase-like transcri 100.0 8.4E-52 1.8E-56 501.1 22.8 499 387-941 135-673 (674)
19 KOG0383 Predicted helicase [Ge 100.0 5.7E-51 1.2E-55 486.0 11.8 383 381-872 294-696 (696)
20 PF00176 SNF2_N: SNF2 family N 100.0 1.2E-39 2.5E-44 369.4 22.7 296 386-707 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 4.1E-37 8.9E-42 374.0 34.2 353 380-926 253-615 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 7.5E-31 1.6E-35 335.0 35.1 460 382-938 15-499 (773)
23 KOG0298 DEAD box-containing he 100.0 1.8E-32 3.9E-37 333.7 16.6 279 411-709 374-693 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 9.1E-26 2E-30 255.8 33.0 468 382-942 15-505 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 4.2E-25 9E-30 262.7 31.8 369 377-930 31-406 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 9E-25 1.9E-29 264.7 32.1 339 381-918 113-455 (501)
27 KOG1123 RNA polymerase II tran 99.9 6.7E-24 1.5E-28 237.0 20.6 361 370-923 290-658 (776)
28 KOG0354 DEAD-box like helicase 99.9 1.4E-20 3E-25 225.6 35.5 465 382-943 62-553 (746)
29 PTZ00110 helicase; Provisional 99.9 1.9E-20 4.2E-25 228.7 29.1 125 776-918 360-484 (545)
30 TIGR00614 recQ_fam ATP-depende 99.9 7.3E-20 1.6E-24 220.7 31.5 105 792-912 225-329 (470)
31 PLN00206 DEAD-box ATP-dependen 99.9 2.3E-20 4.9E-25 227.3 26.6 123 778-917 352-474 (518)
32 PRK11192 ATP-dependent RNA hel 99.9 1E-19 2.2E-24 217.9 31.0 118 777-912 231-348 (434)
33 PRK11776 ATP-dependent RNA hel 99.9 8E-20 1.7E-24 220.2 29.9 320 382-918 26-349 (460)
34 PRK10590 ATP-dependent RNA hel 99.9 4.7E-20 1E-24 221.6 26.9 115 779-911 233-347 (456)
35 PRK01297 ATP-dependent RNA hel 99.9 1.6E-19 3.4E-24 218.4 30.4 116 776-909 320-435 (475)
36 PRK04837 ATP-dependent RNA hel 99.8 1E-19 2.2E-24 217.0 26.9 121 777-917 241-361 (423)
37 PRK04537 ATP-dependent RNA hel 99.8 2.6E-19 5.7E-24 219.5 29.4 121 777-917 243-363 (572)
38 PRK11057 ATP-dependent DNA hel 99.8 8.4E-19 1.8E-23 217.1 31.6 112 782-911 227-338 (607)
39 PRK11448 hsdR type I restricti 99.8 2.2E-19 4.8E-24 231.5 26.9 115 793-915 698-815 (1123)
40 PTZ00424 helicase 45; Provisio 99.8 3.4E-19 7.3E-24 211.2 26.3 108 793-918 267-374 (401)
41 TIGR01389 recQ ATP-dependent D 99.8 7E-19 1.5E-23 218.1 29.4 116 778-911 211-326 (591)
42 TIGR00643 recG ATP-dependent D 99.8 3.5E-18 7.6E-23 212.5 33.7 311 381-911 234-561 (630)
43 PRK11634 ATP-dependent RNA hel 99.8 2.5E-18 5.3E-23 212.3 29.7 117 777-911 231-347 (629)
44 TIGR03817 DECH_helic helicase/ 99.8 8.4E-18 1.8E-22 211.4 30.9 348 382-926 36-394 (742)
45 PRK10917 ATP-dependent DNA hel 99.8 8.6E-18 1.9E-22 210.4 30.2 310 381-911 260-584 (681)
46 TIGR00580 mfd transcription-re 99.8 6.5E-18 1.4E-22 214.4 28.7 311 382-917 451-769 (926)
47 PLN03137 ATP-dependent DNA hel 99.8 2.6E-17 5.7E-22 205.9 29.9 105 793-913 680-784 (1195)
48 PRK13767 ATP-dependent helicas 99.8 2.8E-17 6E-22 210.7 29.8 120 784-913 275-395 (876)
49 PRK10689 transcription-repair 99.8 2.9E-17 6.3E-22 212.8 30.1 309 382-915 600-916 (1147)
50 KOG0331 ATP-dependent RNA heli 99.8 1.3E-16 2.8E-21 186.7 25.7 118 776-909 323-441 (519)
51 PRK02362 ski2-like helicase; P 99.7 3.4E-16 7.4E-21 198.6 29.3 159 382-579 23-188 (737)
52 KOG0330 ATP-dependent RNA heli 99.7 3E-16 6.6E-21 172.7 22.6 129 778-928 287-415 (476)
53 TIGR00348 hsdR type I site-spe 99.7 1.6E-15 3.5E-20 189.2 31.9 167 380-573 236-405 (667)
54 TIGR01587 cas3_core CRISPR-ass 99.7 3.1E-15 6.8E-20 174.7 29.7 132 778-927 208-350 (358)
55 PRK01172 ski2-like helicase; P 99.7 1.2E-15 2.5E-20 192.3 27.3 119 785-908 228-368 (674)
56 PRK00254 ski2-like helicase; P 99.7 4.3E-15 9.3E-20 188.2 30.0 160 381-579 22-186 (720)
57 COG0513 SrmB Superfamily II DN 99.7 1.2E-14 2.6E-19 176.4 30.3 133 777-930 259-391 (513)
58 TIGR03714 secA2 accessory Sec 99.7 1.4E-14 3.1E-19 177.7 29.4 116 775-909 406-530 (762)
59 COG4096 HsdR Type I site-speci 99.7 1.2E-15 2.6E-20 182.9 18.6 378 370-915 153-545 (875)
60 COG1200 RecG RecG-like helicas 99.6 2.5E-14 5.4E-19 170.0 26.8 319 381-911 261-586 (677)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.6 2.7E-14 5.8E-19 177.0 27.5 118 791-926 270-402 (844)
62 KOG0350 DEAD-box ATP-dependent 99.6 1.5E-14 3.4E-19 163.5 21.6 133 778-928 416-548 (620)
63 COG1201 Lhr Lhr-like helicases 99.6 1.8E-14 3.9E-19 177.6 23.8 320 380-906 20-352 (814)
64 PRK09200 preprotein translocas 99.6 1.8E-13 3.8E-18 169.8 28.7 117 775-909 410-534 (790)
65 cd00079 HELICc Helicase superf 99.6 4.7E-15 1E-19 146.5 10.8 120 777-912 12-131 (131)
66 PF04851 ResIII: Type III rest 99.6 7.4E-15 1.6E-19 153.8 12.4 168 381-571 2-183 (184)
67 KOG0345 ATP-dependent RNA heli 99.6 1.6E-13 3.4E-18 154.6 22.9 122 774-911 238-359 (567)
68 COG1205 Distinct helicase fami 99.6 1.7E-13 3.6E-18 173.5 25.0 344 383-925 71-429 (851)
69 PRK12898 secA preprotein trans 99.6 8.5E-13 1.8E-17 160.6 29.8 130 775-927 455-592 (656)
70 KOG0328 Predicted ATP-dependen 99.6 2.1E-14 4.5E-19 152.0 12.0 123 778-920 253-375 (400)
71 TIGR00963 secA preprotein tran 99.5 3.5E-13 7.5E-18 164.7 23.8 116 776-909 388-510 (745)
72 TIGR03158 cas3_cyano CRISPR-as 99.5 5.5E-13 1.2E-17 155.3 24.4 87 792-901 271-357 (357)
73 PRK09751 putative ATP-dependen 99.5 6E-13 1.3E-17 173.9 26.7 108 792-903 243-371 (1490)
74 PRK05580 primosome assembly pr 99.5 4.9E-12 1.1E-16 158.3 33.3 105 799-917 432-550 (679)
75 PHA02653 RNA helicase NPH-II; 99.5 1.4E-12 3.1E-17 160.9 27.1 112 792-921 394-517 (675)
76 KOG0333 U5 snRNP-like RNA heli 99.5 1.6E-12 3.4E-17 148.1 23.9 119 773-909 499-617 (673)
77 COG4889 Predicted helicase [Ge 99.5 9.4E-13 2E-17 156.0 22.5 173 370-570 149-350 (1518)
78 COG0514 RecQ Superfamily II DN 99.5 2.8E-12 6.2E-17 153.2 26.4 313 381-921 16-340 (590)
79 KOG0342 ATP-dependent RNA heli 99.5 8.9E-13 1.9E-17 149.8 20.9 114 776-906 314-427 (543)
80 KOG0335 ATP-dependent RNA heli 99.5 1E-12 2.3E-17 151.7 20.7 124 774-913 311-442 (482)
81 PRK09401 reverse gyrase; Revie 99.5 4.1E-12 8.9E-17 165.7 28.2 104 777-903 315-431 (1176)
82 TIGR00595 priA primosomal prot 99.5 7E-12 1.5E-16 151.7 26.8 99 805-917 270-382 (505)
83 COG1204 Superfamily II helicas 99.5 1.6E-12 3.6E-17 162.4 20.9 153 382-570 31-190 (766)
84 KOG0343 RNA Helicase [RNA proc 99.5 1E-11 2.2E-16 142.1 24.5 137 776-931 298-434 (758)
85 KOG0348 ATP-dependent RNA heli 99.5 5.1E-12 1.1E-16 144.2 21.7 139 777-921 407-557 (708)
86 KOG4284 DEAD box protein [Tran 99.4 3E-12 6.4E-17 148.3 17.1 112 778-907 259-370 (980)
87 smart00487 DEXDc DEAD-like hel 99.4 8.5E-13 1.8E-17 138.8 11.2 162 381-573 7-173 (201)
88 COG1197 Mfd Transcription-repa 99.4 1.1E-10 2.3E-15 146.5 31.2 325 383-929 595-925 (1139)
89 cd00046 DEXDc DEAD-like helica 99.4 2.7E-12 5.8E-17 127.0 13.3 139 413-570 2-144 (144)
90 TIGR01970 DEAH_box_HrpB ATP-de 99.4 7E-11 1.5E-15 149.4 29.0 110 793-918 209-336 (819)
91 PRK09694 helicase Cas3; Provis 99.4 7.3E-11 1.6E-15 149.3 29.0 109 786-906 553-665 (878)
92 PF00271 Helicase_C: Helicase 99.4 3.1E-13 6.8E-18 121.8 5.7 73 828-904 6-78 (78)
93 KOG0336 ATP-dependent RNA heli 99.4 8.9E-12 1.9E-16 137.8 18.0 116 776-908 449-564 (629)
94 KOG0341 DEAD-box protein abstr 99.4 6.7E-12 1.5E-16 137.9 16.3 130 776-926 407-536 (610)
95 KOG0340 ATP-dependent RNA heli 99.4 7.5E-11 1.6E-15 129.3 23.4 120 776-911 236-357 (442)
96 KOG0344 ATP-dependent RNA heli 99.4 1.5E-11 3.2E-16 143.1 18.6 120 776-912 372-492 (593)
97 TIGR01054 rgy reverse gyrase. 99.4 6.9E-11 1.5E-15 154.6 26.5 88 779-888 315-409 (1171)
98 KOG0338 ATP-dependent RNA heli 99.3 5E-11 1.1E-15 135.5 19.9 142 781-945 416-563 (691)
99 PRK13104 secA preprotein trans 99.3 2.9E-10 6.4E-15 141.2 28.4 119 776-912 427-583 (896)
100 KOG0332 ATP-dependent RNA heli 99.3 1.1E-10 2.4E-15 128.5 21.0 125 777-921 316-447 (477)
101 PRK12906 secA preprotein trans 99.3 2.8E-10 6E-15 140.8 26.7 116 776-909 423-546 (796)
102 COG1202 Superfamily II helicas 99.3 5.3E-11 1.2E-15 136.9 18.4 108 794-918 441-553 (830)
103 PRK11664 ATP-dependent RNA hel 99.3 2.9E-10 6.4E-15 144.1 26.8 112 793-920 212-341 (812)
104 KOG0347 RNA helicase [RNA proc 99.3 5.3E-11 1.2E-15 136.4 16.7 97 793-905 463-559 (731)
105 TIGR00631 uvrb excinuclease AB 99.3 9.3E-10 2E-14 136.6 27.5 134 775-927 424-564 (655)
106 smart00490 HELICc helicase sup 99.3 1.1E-11 2.5E-16 111.6 7.8 73 828-904 10-82 (82)
107 PRK14701 reverse gyrase; Provi 99.2 1.5E-09 3.4E-14 144.9 30.1 103 780-906 320-446 (1638)
108 PRK12904 preprotein translocas 99.2 3.9E-09 8.5E-14 131.2 31.2 119 776-912 413-569 (830)
109 PRK13107 preprotein translocas 99.2 1.1E-08 2.3E-13 127.1 31.6 116 776-909 432-584 (908)
110 KOG0339 ATP-dependent RNA heli 99.2 3.1E-09 6.7E-14 121.0 23.2 126 777-921 453-578 (731)
111 PRK12900 secA preprotein trans 99.2 2.4E-08 5.2E-13 124.5 32.5 115 776-908 581-703 (1025)
112 KOG0326 ATP-dependent RNA heli 99.2 8.6E-11 1.9E-15 126.8 9.5 113 776-906 307-419 (459)
113 KOG0952 DNA/RNA helicase MER3/ 99.1 1E-08 2.2E-13 125.8 26.9 164 409-597 124-307 (1230)
114 COG4098 comFA Superfamily II D 99.1 3.7E-08 8E-13 108.2 28.2 118 781-914 293-414 (441)
115 PRK05298 excinuclease ABC subu 99.1 1.3E-08 2.8E-13 127.3 28.6 124 775-917 428-556 (652)
116 cd00268 DEADc DEAD-box helicas 99.1 1.5E-09 3.4E-14 116.1 15.9 160 382-571 21-185 (203)
117 KOG0334 RNA helicase [RNA proc 99.1 4.7E-09 1E-13 129.7 20.0 123 776-917 597-719 (997)
118 PF00270 DEAD: DEAD/DEAH box h 99.0 1.5E-09 3.2E-14 112.3 12.9 160 385-576 2-167 (169)
119 TIGR01967 DEAH_box_HrpA ATP-de 99.0 2.3E-08 5E-13 130.0 26.2 112 792-921 278-407 (1283)
120 COG1203 CRISPR-associated heli 99.0 2E-08 4.3E-13 127.3 24.8 134 788-938 435-572 (733)
121 PF11496 HDA2-3: Class II hist 99.0 3.6E-09 7.8E-14 119.1 15.8 219 651-929 4-256 (297)
122 PF13872 AAA_34: P-loop contai 99.0 3.3E-09 7.2E-14 117.2 12.8 257 373-670 26-303 (303)
123 COG0556 UvrB Helicase subunit 99.0 6.4E-07 1.4E-11 103.7 30.3 138 776-930 429-571 (663)
124 PRK11131 ATP-dependent RNA hel 98.9 8.6E-08 1.9E-12 124.4 25.3 111 792-920 285-413 (1294)
125 PRK12326 preprotein translocas 98.9 9.4E-07 2E-11 107.8 32.3 119 776-912 410-543 (764)
126 KOG0346 RNA helicase [RNA proc 98.9 2.8E-08 6.1E-13 111.9 17.7 123 776-917 252-409 (569)
127 PRK12899 secA preprotein trans 98.9 9.7E-07 2.1E-11 110.3 32.5 119 776-912 551-677 (970)
128 KOG0351 ATP-dependent DNA heli 98.9 4.1E-08 9E-13 124.4 19.2 109 791-915 483-591 (941)
129 KOG0327 Translation initiation 98.8 5.6E-08 1.2E-12 108.7 15.4 119 778-918 252-370 (397)
130 KOG0337 ATP-dependent RNA heli 98.8 6.3E-08 1.4E-12 108.8 14.9 124 776-918 245-368 (529)
131 PRK13103 secA preprotein trans 98.7 3.9E-06 8.4E-11 104.9 29.5 120 775-912 431-587 (913)
132 KOG0951 RNA helicase BRR2, DEA 98.7 6.7E-07 1.5E-11 111.5 21.5 162 410-590 324-502 (1674)
133 TIGR01407 dinG_rel DnaQ family 98.6 7.2E-06 1.6E-10 106.3 26.1 82 792-888 673-756 (850)
134 KOG0352 ATP-dependent DNA heli 98.5 4.5E-06 9.7E-11 94.0 19.4 103 795-913 257-359 (641)
135 COG0610 Type I site-specific r 98.5 9E-07 2E-11 114.6 15.5 172 382-574 244-417 (962)
136 PRK12903 secA preprotein trans 98.5 5.9E-05 1.3E-09 93.7 29.2 119 775-912 408-535 (925)
137 TIGR00596 rad1 DNA repair prot 98.5 4.1E-06 8.8E-11 105.9 18.8 61 879-942 478-539 (814)
138 KOG0353 ATP-dependent DNA heli 98.4 3.5E-05 7.5E-10 85.5 23.1 88 793-896 317-404 (695)
139 COG1198 PriA Primosomal protei 98.4 5.6E-05 1.2E-09 94.0 26.0 153 380-571 196-360 (730)
140 PRK12901 secA preprotein trans 98.2 0.00021 4.6E-09 90.2 26.3 116 776-909 611-734 (1112)
141 CHL00122 secA preprotein trans 98.2 0.00037 8E-09 87.3 27.7 84 776-876 407-491 (870)
142 PRK15483 type III restriction- 98.2 1.6E-05 3.4E-10 100.7 16.0 185 412-606 60-278 (986)
143 COG4581 Superfamily II RNA hel 98.2 8.7E-05 1.9E-09 94.4 22.5 151 379-570 116-270 (1041)
144 KOG0947 Cytoplasmic exosomal R 98.1 0.00019 4E-09 88.5 21.0 145 381-570 296-444 (1248)
145 KOG1513 Nuclear helicase MOP-3 98.1 2.3E-05 5E-10 93.9 12.4 266 373-672 255-539 (1300)
146 TIGR00604 rad3 DNA repair heli 98.0 0.00037 8E-09 88.9 23.6 72 382-464 10-82 (705)
147 PF07652 Flavi_DEAD: Flaviviru 98.0 3.2E-05 6.9E-10 77.0 10.4 131 410-571 3-137 (148)
148 KOG4299 PHD Zn-finger protein 98.0 2.2E-06 4.8E-11 101.3 1.4 49 194-246 254-305 (613)
149 KOG0329 ATP-dependent RNA heli 98.0 8.5E-05 1.8E-09 78.9 12.9 45 863-907 302-346 (387)
150 PF13871 Helicase_C_4: Helicas 97.9 2.2E-05 4.7E-10 87.1 7.9 93 846-942 52-152 (278)
151 KOG0948 Nuclear exosomal RNA h 97.9 0.00011 2.4E-09 88.2 13.9 144 381-570 128-276 (1041)
152 PRK07246 bifunctional ATP-depe 97.9 0.0018 3.8E-08 83.6 25.9 91 781-890 635-728 (820)
153 PRK12902 secA preprotein trans 97.9 0.0057 1.2E-07 77.0 28.6 84 776-876 422-506 (939)
154 KOG0349 Putative DEAD-box RNA 97.9 4.6E-05 1E-09 86.0 9.0 99 792-903 504-602 (725)
155 COG0653 SecA Preprotein transl 97.8 0.004 8.6E-08 78.0 26.4 112 776-905 412-534 (822)
156 KOG0949 Predicted helicase, DE 97.8 0.0013 2.7E-08 81.6 20.9 157 409-583 524-682 (1330)
157 COG1110 Reverse gyrase [DNA re 97.8 0.011 2.4E-07 74.3 28.7 116 410-544 96-215 (1187)
158 KOG0922 DEAH-box RNA helicase 97.8 0.0045 9.7E-08 74.8 23.9 117 794-920 259-392 (674)
159 KOG0950 DNA polymerase theta/e 97.7 0.0022 4.8E-08 79.9 20.1 68 833-905 526-598 (1008)
160 KOG0920 ATP-dependent RNA heli 97.7 0.0028 6E-08 80.3 21.3 129 778-918 396-544 (924)
161 PF02399 Herpes_ori_bp: Origin 97.7 0.0019 4.2E-08 80.2 19.4 108 782-912 271-384 (824)
162 COG1643 HrpA HrpA-like helicas 97.6 0.0051 1.1E-07 78.1 22.4 114 793-921 259-390 (845)
163 PF00628 PHD: PHD-finger; Int 97.5 2.3E-05 4.9E-10 64.6 0.2 47 195-245 1-50 (51)
164 KOG0926 DEAH-box RNA helicase 97.5 0.002 4.4E-08 78.3 15.6 64 849-916 621-702 (1172)
165 KOG1244 Predicted transcriptio 97.4 5E-05 1.1E-09 80.8 1.0 73 149-244 246-329 (336)
166 TIGR03117 cas_csf4 CRISPR-asso 97.3 0.0028 6.1E-08 78.6 14.4 68 387-466 2-70 (636)
167 PRK10536 hypothetical protein; 97.3 0.00072 1.6E-08 74.3 8.1 151 383-574 60-216 (262)
168 smart00249 PHD PHD zinc finger 97.2 0.00023 5.1E-09 56.9 3.1 44 195-243 1-47 (47)
169 KOG0953 Mitochondrial RNA heli 97.2 0.0012 2.5E-08 77.7 9.8 101 791-907 356-465 (700)
170 smart00488 DEXDc2 DEAD-like he 97.2 0.0041 9E-08 70.6 13.9 73 383-465 9-84 (289)
171 smart00489 DEXDc3 DEAD-like he 97.2 0.0041 9E-08 70.6 13.9 73 383-465 9-84 (289)
172 PF13086 AAA_11: AAA domain; P 97.2 0.011 2.5E-07 63.9 16.6 69 382-464 1-75 (236)
173 PF02562 PhoH: PhoH-like prote 97.2 0.00037 8E-09 74.5 4.6 151 383-575 5-160 (205)
174 TIGR02562 cas3_yersinia CRISPR 97.1 0.24 5.2E-06 63.9 28.5 47 858-907 837-883 (1110)
175 KOG1473 Nucleosome remodeling 96.9 0.00041 8.9E-09 86.3 1.9 51 188-244 339-389 (1414)
176 KOG0924 mRNA splicing factor A 96.8 0.039 8.4E-07 66.5 17.3 108 828-939 596-721 (1042)
177 PF12340 DUF3638: Protein of u 96.8 0.0074 1.6E-07 65.3 10.6 150 382-547 23-187 (229)
178 KOG1803 DNA helicase [Replicat 96.3 0.025 5.5E-07 67.8 11.8 69 377-462 180-249 (649)
179 PF07517 SecA_DEAD: SecA DEAD- 96.3 0.039 8.5E-07 61.6 12.7 163 380-579 75-266 (266)
180 PF13401 AAA_22: AAA domain; P 96.1 0.034 7.4E-07 54.7 10.1 116 411-570 4-125 (131)
181 COG3587 Restriction endonuclea 96.1 0.042 9E-07 68.2 12.0 154 410-570 73-242 (985)
182 KOG1802 RNA helicase nonsense 96.0 0.092 2E-06 63.4 13.9 68 381-465 409-477 (935)
183 PF13604 AAA_30: AAA domain; P 96.0 0.074 1.6E-06 56.9 12.2 59 382-456 1-59 (196)
184 KOG4323 Polycomb-like PHD Zn-f 95.9 0.0059 1.3E-07 71.6 3.9 100 146-247 97-225 (464)
185 KOG0923 mRNA splicing factor A 95.7 0.27 5.9E-06 59.6 16.3 82 829-919 506-607 (902)
186 PRK08074 bifunctional ATP-depe 95.7 0.12 2.6E-06 68.1 14.9 104 780-897 738-846 (928)
187 PRK14873 primosome assembly pr 95.6 0.089 1.9E-06 66.2 12.6 124 420-571 169-304 (665)
188 KOG0825 PHD Zn-finger protein 95.4 0.013 2.7E-07 71.0 4.1 47 194-246 216-266 (1134)
189 PF13307 Helicase_C_2: Helicas 95.3 0.028 6E-07 58.6 5.8 84 790-889 6-93 (167)
190 KOG1512 PHD Zn-finger protein 95.2 0.0039 8.4E-08 67.1 -1.0 42 195-244 316-362 (381)
191 TIGR00376 DNA helicase, putati 95.1 0.29 6.3E-06 61.7 15.0 67 381-464 156-223 (637)
192 KOG1131 RNA polymerase II tran 94.9 0.47 1E-05 56.1 14.4 61 382-453 16-76 (755)
193 PF09848 DUF2075: Uncharacteri 94.8 0.094 2E-06 61.4 9.1 45 414-460 4-48 (352)
194 KOG1973 Chromatin remodeling p 94.8 0.012 2.7E-07 66.0 1.4 43 195-246 223-268 (274)
195 TIGR01448 recD_rel helicase, p 94.7 0.21 4.6E-06 63.9 12.4 134 381-573 322-455 (720)
196 PRK04296 thymidine kinase; Pro 94.6 0.11 2.3E-06 55.4 8.1 34 414-451 5-38 (190)
197 COG0553 HepA Superfamily II DN 94.5 0.066 1.4E-06 70.2 7.4 74 379-466 81-156 (866)
198 KOG4150 Predicted ATP-dependen 94.4 0.067 1.5E-06 63.1 6.4 125 774-906 506-630 (1034)
199 PRK10875 recD exonuclease V su 94.4 0.27 5.8E-06 61.5 12.1 150 384-573 154-304 (615)
200 PRK12723 flagellar biosynthesi 93.8 1 2.2E-05 53.3 14.7 75 532-606 254-344 (388)
201 TIGR01447 recD exodeoxyribonuc 93.7 0.4 8.8E-06 59.8 11.6 148 385-572 148-297 (586)
202 COG1875 NYN ribonuclease and A 93.2 0.21 4.6E-06 57.0 7.2 37 534-572 353-389 (436)
203 smart00382 AAA ATPases associa 92.7 0.64 1.4E-05 45.1 9.3 45 412-460 3-47 (148)
204 TIGR02881 spore_V_K stage V sp 92.7 1.1 2.4E-05 50.1 12.2 28 410-437 41-68 (261)
205 cd00009 AAA The AAA+ (ATPases 92.7 1.3 2.7E-05 43.5 11.5 26 410-435 18-43 (151)
206 KOG0957 PHD finger protein [Ge 92.6 0.054 1.2E-06 62.7 1.6 50 195-246 546-598 (707)
207 KOG1473 Nucleosome remodeling 92.6 0.037 8E-07 69.8 0.3 58 195-256 430-492 (1414)
208 PRK08074 bifunctional ATP-depe 92.4 0.54 1.2E-05 62.1 10.7 83 382-480 257-344 (928)
209 COG1199 DinG Rad3-related DNA 92.4 0.6 1.3E-05 59.5 10.7 80 792-889 478-560 (654)
210 PRK08116 hypothetical protein; 91.7 6.5 0.00014 44.3 16.8 45 411-459 114-158 (268)
211 PRK06526 transposase; Provisio 91.6 0.72 1.6E-05 51.5 9.0 46 410-463 97-142 (254)
212 KOG1805 DNA replication helica 91.2 2.7 5.8E-05 53.7 13.9 151 381-572 668-831 (1100)
213 CHL00181 cbbX CbbX; Provisiona 90.8 1.7 3.6E-05 49.5 11.0 43 410-452 58-100 (287)
214 TIGR02880 cbbX_cfxQ probable R 90.6 1.1 2.3E-05 51.0 9.2 41 410-450 57-97 (284)
215 PRK11747 dinG ATP-dependent DN 90.3 1.2 2.5E-05 57.1 10.3 97 779-890 520-619 (697)
216 KOG4299 PHD Zn-finger protein 90.3 0.13 2.8E-06 62.1 1.6 45 194-243 48-92 (613)
217 KOG1132 Helicase of the DEAD s 90.2 1.4 3E-05 55.6 10.3 95 792-894 560-662 (945)
218 cd01124 KaiC KaiC is a circadi 90.2 2.5 5.4E-05 44.2 11.2 48 414-465 2-49 (187)
219 TIGR03420 DnaA_homol_Hda DnaA 90.1 1.9 4.1E-05 46.7 10.5 28 409-436 36-63 (226)
220 KOG0925 mRNA splicing factor A 89.4 0.83 1.8E-05 53.7 7.0 34 889-922 358-391 (699)
221 PF13245 AAA_19: Part of AAA d 89.3 1.2 2.5E-05 40.1 6.5 45 413-457 12-56 (76)
222 PRK07952 DNA replication prote 89.2 3.9 8.4E-05 45.4 12.0 44 412-463 100-143 (244)
223 PRK05703 flhF flagellar biosyn 89.0 14 0.0003 44.6 17.3 56 532-588 299-360 (424)
224 COG5432 RAD18 RING-finger-cont 88.9 0.22 4.8E-06 54.2 1.9 45 195-249 27-71 (391)
225 COG5034 TNG2 Chromatin remodel 87.8 0.24 5.3E-06 53.4 1.4 46 190-244 218-268 (271)
226 KOG4443 Putative transcription 87.4 0.3 6.5E-06 59.1 1.9 43 195-243 70-115 (694)
227 KOG0951 RNA helicase BRR2, DEA 86.8 2.5 5.4E-05 55.2 9.4 108 409-548 1157-1269(1674)
228 TIGR03015 pepcterm_ATPase puta 86.8 11 0.00025 41.8 14.2 22 413-434 45-66 (269)
229 PRK07003 DNA polymerase III su 86.7 5.4 0.00012 50.6 12.2 27 411-437 38-64 (830)
230 PHA02533 17 large terminase pr 86.5 5.6 0.00012 49.2 12.3 56 381-452 58-113 (534)
231 PRK11889 flhF flagellar biosyn 86.5 21 0.00046 42.3 16.2 45 412-460 242-290 (436)
232 PRK14087 dnaA chromosomal repl 86.3 5.6 0.00012 48.2 12.0 49 411-461 141-189 (450)
233 PTZ00112 origin recognition co 86.3 9.1 0.0002 49.3 13.7 46 384-436 760-806 (1164)
234 PF10497 zf-4CXXC_R1: Zinc-fin 86.2 0.37 8E-06 46.1 1.5 48 197-245 22-69 (105)
235 PF06745 KaiC: KaiC; InterPro 86.2 6.9 0.00015 42.6 11.7 52 410-465 18-70 (226)
236 TIGR02928 orc1/cdc6 family rep 86.1 9.9 0.00022 44.5 13.9 56 373-437 11-66 (365)
237 PRK08769 DNA polymerase III su 86.1 4.1 8.9E-05 47.0 10.2 53 380-439 2-54 (319)
238 PRK05707 DNA polymerase III su 86.0 3.5 7.7E-05 47.8 9.7 47 382-438 3-49 (328)
239 PF13177 DNA_pol3_delta2: DNA 85.7 11 0.00024 38.9 12.3 31 410-440 18-48 (162)
240 PRK08727 hypothetical protein; 85.6 7.2 0.00016 42.9 11.5 26 412-437 42-67 (233)
241 PF00265 TK: Thymidine kinase; 85.6 3.3 7.2E-05 43.5 8.4 34 415-452 5-38 (176)
242 PRK08084 DNA replication initi 85.5 6.1 0.00013 43.5 10.9 27 410-436 44-70 (235)
243 PF05876 Terminase_GpA: Phage 85.4 1.1 2.3E-05 55.9 5.4 173 375-581 9-190 (557)
244 PRK14956 DNA polymerase III su 85.1 6.1 0.00013 47.9 11.3 26 412-437 41-66 (484)
245 COG3421 Uncharacterized protei 84.9 0.73 1.6E-05 55.5 3.4 40 418-460 4-44 (812)
246 PF06862 DUF1253: Protein of u 84.9 11 0.00024 45.2 13.3 114 776-904 280-397 (442)
247 PRK12402 replication factor C 84.9 4.9 0.00011 46.4 10.3 25 412-436 37-61 (337)
248 KOG0954 PHD finger protein [Ge 84.8 0.45 9.7E-06 58.1 1.6 59 175-244 249-319 (893)
249 PRK00149 dnaA chromosomal repl 84.5 5.3 0.00011 48.5 10.8 27 412-438 149-175 (450)
250 PRK09112 DNA polymerase III su 84.5 7.8 0.00017 45.4 11.7 29 410-438 44-72 (351)
251 PRK07994 DNA polymerase III su 84.2 10 0.00022 47.9 13.1 27 412-438 39-65 (647)
252 PRK14974 cell division protein 84.2 10 0.00022 44.2 12.3 47 412-462 141-191 (336)
253 smart00491 HELICc2 helicase su 84.0 2.9 6.3E-05 42.4 6.9 57 833-891 23-84 (142)
254 PRK08181 transposase; Validate 83.9 8.7 0.00019 43.3 11.3 29 410-438 105-133 (269)
255 KOG1245 Chromatin remodeling c 83.6 0.41 8.9E-06 64.6 0.7 54 188-247 1103-1159(1404)
256 TIGR02768 TraA_Ti Ti-type conj 83.6 6 0.00013 51.1 11.1 60 381-457 351-410 (744)
257 smart00492 HELICc3 helicase su 83.5 3.8 8.2E-05 41.5 7.5 55 833-891 26-83 (141)
258 TIGR00362 DnaA chromosomal rep 83.0 6.5 0.00014 47.0 10.6 27 412-438 137-163 (405)
259 PRK12323 DNA polymerase III su 83.0 8.7 0.00019 48.2 11.6 27 411-437 38-64 (700)
260 PRK06835 DNA replication prote 82.9 14 0.00031 42.8 12.9 29 410-438 182-210 (329)
261 KOG0955 PHD finger protein BR1 82.9 0.99 2.1E-05 58.8 3.7 48 192-247 218-270 (1051)
262 KOG1081 Transcription factor N 82.8 0.76 1.6E-05 55.5 2.5 61 189-249 85-163 (463)
263 COG1199 DinG Rad3-related DNA 82.4 3.7 8E-05 52.4 8.6 71 381-464 14-85 (654)
264 PRK09111 DNA polymerase III su 82.3 6.7 0.00015 49.2 10.5 30 409-438 44-73 (598)
265 cd04718 BAH_plant_2 BAH, or Br 82.2 0.7 1.5E-05 46.6 1.6 27 214-246 1-27 (148)
266 PRK12377 putative replication 82.2 17 0.00036 40.5 12.5 43 411-457 101-143 (248)
267 PF05970 PIF1: PIF1-like helic 82.1 4.8 0.0001 47.5 8.8 63 383-457 2-64 (364)
268 PF05621 TniB: Bacterial TniB 82.0 18 0.0004 41.1 12.8 39 532-570 145-189 (302)
269 KOG2807 RNA polymerase II tran 81.9 0.85 1.8E-05 50.9 2.2 89 142-247 269-377 (378)
270 PF06733 DEAD_2: DEAD_2; Inte 81.7 1.6 3.4E-05 45.7 4.1 42 494-545 117-158 (174)
271 PRK14088 dnaA chromosomal repl 81.7 9.2 0.0002 46.3 11.2 27 412-438 131-157 (440)
272 KOG0989 Replication factor C, 81.6 5.9 0.00013 44.7 8.6 44 386-437 40-83 (346)
273 PLN03025 replication factor C 81.5 14 0.00031 42.6 12.3 26 411-436 34-59 (319)
274 PRK14960 DNA polymerase III su 81.4 12 0.00025 47.2 11.8 27 411-437 37-63 (702)
275 PRK06921 hypothetical protein; 81.3 22 0.00047 40.0 13.3 29 410-438 116-144 (266)
276 PF00448 SRP54: SRP54-type pro 80.4 7.5 0.00016 41.6 8.7 34 414-451 4-37 (196)
277 PRK14952 DNA polymerase III su 80.3 13 0.00027 46.6 11.9 26 412-437 36-61 (584)
278 cd01120 RecA-like_NTPases RecA 80.0 22 0.00047 35.6 11.8 33 415-451 3-35 (165)
279 PRK07764 DNA polymerase III su 80.0 12 0.00026 48.7 11.9 27 411-437 37-63 (824)
280 cd01122 GP4d_helicase GP4d_hel 80.0 23 0.00051 39.5 13.1 41 410-453 29-69 (271)
281 PRK11054 helD DNA helicase IV; 79.8 5 0.00011 51.2 8.3 70 382-467 196-266 (684)
282 COG0464 SpoVK ATPases of the A 79.7 17 0.00037 44.6 12.9 75 381-464 248-322 (494)
283 cd01121 Sms Sms (bacterial rad 79.6 19 0.0004 42.6 12.5 50 411-464 82-131 (372)
284 PRK07993 DNA polymerase III su 79.6 6.2 0.00014 45.9 8.4 50 382-438 2-51 (334)
285 PRK05986 cob(I)alamin adenolsy 79.6 11 0.00023 40.2 9.4 35 411-449 22-56 (191)
286 PHA02544 44 clamp loader, smal 79.4 14 0.0003 42.4 11.3 40 532-571 100-141 (316)
287 PF00580 UvrD-helicase: UvrD/R 79.2 4.4 9.6E-05 45.9 7.1 53 412-464 14-67 (315)
288 PRK14961 DNA polymerase III su 79.2 13 0.00029 43.7 11.1 25 412-436 39-63 (363)
289 PRK12422 chromosomal replicati 79.0 11 0.00024 45.7 10.5 36 412-451 142-177 (445)
290 COG1484 DnaC DNA replication p 78.9 7.6 0.00016 43.4 8.6 51 409-463 103-153 (254)
291 PRK06645 DNA polymerase III su 78.4 19 0.00041 44.3 12.4 29 410-438 42-70 (507)
292 PRK06871 DNA polymerase III su 78.4 19 0.0004 41.8 11.7 50 383-439 3-52 (325)
293 PRK14949 DNA polymerase III su 78.1 16 0.00036 47.4 12.0 26 412-437 39-64 (944)
294 KOG3612 PHD Zn-finger protein 77.5 0.89 1.9E-05 54.1 0.7 58 190-252 57-114 (588)
295 PRK13889 conjugal transfer rel 77.1 17 0.00038 48.1 12.2 131 382-577 346-477 (988)
296 PRK06893 DNA replication initi 76.9 17 0.00036 39.9 10.4 26 413-438 41-66 (229)
297 PF14835 zf-RING_6: zf-RING of 76.3 1.6 3.4E-05 37.6 1.6 37 196-244 10-47 (65)
298 COG5141 PHD zinc finger-contai 76.0 1.3 2.7E-05 51.9 1.3 83 139-221 200-334 (669)
299 PRK14086 dnaA chromosomal repl 75.9 16 0.00035 45.6 10.9 45 412-458 315-359 (617)
300 cd00561 CobA_CobO_BtuR ATP:cor 75.7 22 0.00048 36.8 10.2 53 530-582 93-149 (159)
301 PRK14964 DNA polymerase III su 75.5 28 0.0006 42.7 12.6 29 409-437 33-61 (491)
302 PRK14959 DNA polymerase III su 75.5 15 0.00032 46.2 10.4 27 411-437 38-64 (624)
303 PRK14962 DNA polymerase III su 75.5 21 0.00047 43.5 11.7 26 411-436 36-61 (472)
304 KOG1513 Nuclear helicase MOP-3 75.3 4.2 9E-05 50.7 5.4 79 848-932 850-937 (1300)
305 PRK14722 flhF flagellar biosyn 75.0 19 0.00041 42.5 10.7 40 410-451 136-175 (374)
306 PRK09183 transposase/IS protei 75.0 18 0.0004 40.4 10.3 28 409-436 100-127 (259)
307 PRK07471 DNA polymerase III su 74.8 34 0.00074 40.4 12.8 31 409-439 39-69 (365)
308 PRK14958 DNA polymerase III su 74.2 27 0.00059 43.1 12.3 27 411-437 38-64 (509)
309 TIGR00595 priA primosomal prot 73.9 22 0.00047 43.9 11.3 97 773-885 5-101 (505)
310 PHA03368 DNA packaging termina 73.7 10 0.00022 47.4 8.2 38 907-944 617-655 (738)
311 PHA03372 DNA packaging termina 73.5 7.8 0.00017 47.8 7.1 47 421-469 212-263 (668)
312 TIGR01075 uvrD DNA helicase II 73.4 7.9 0.00017 50.0 7.8 70 382-467 4-74 (715)
313 PRK14957 DNA polymerase III su 73.3 33 0.00071 42.6 12.6 26 412-437 39-64 (546)
314 PRK05642 DNA replication initi 73.3 19 0.00042 39.6 9.8 38 532-569 97-138 (234)
315 PRK00411 cdc6 cell division co 73.1 47 0.001 39.3 13.8 29 409-437 53-81 (394)
316 PF01695 IstB_IS21: IstB-like 73.0 5.9 0.00013 41.7 5.4 47 409-463 45-91 (178)
317 TIGR03877 thermo_KaiC_1 KaiC d 73.0 34 0.00073 37.7 11.6 44 410-457 20-63 (237)
318 PRK14969 DNA polymerase III su 72.4 28 0.0006 43.2 11.9 27 411-437 38-64 (527)
319 TIGR00708 cobA cob(I)alamin ad 72.4 12 0.00027 39.2 7.4 53 530-582 95-151 (173)
320 PRK08451 DNA polymerase III su 72.2 27 0.00058 43.3 11.4 28 411-438 36-63 (535)
321 PF00004 AAA: ATPase family as 71.9 15 0.00033 35.6 7.8 21 415-435 2-22 (132)
322 PRK03992 proteasome-activating 71.7 12 0.00025 44.7 8.1 26 409-434 163-188 (389)
323 PRK07940 DNA polymerase III su 71.5 11 0.00024 44.9 7.8 28 411-438 36-63 (394)
324 COG3267 ExeA Type II secretory 71.3 39 0.00085 37.5 11.1 46 414-464 54-105 (269)
325 PRK06090 DNA polymerase III su 71.0 23 0.0005 40.9 10.0 51 382-439 3-53 (319)
326 PRK08691 DNA polymerase III su 70.8 70 0.0015 40.8 14.7 28 410-437 37-64 (709)
327 COG5141 PHD zinc finger-contai 70.8 1.7 3.8E-05 50.8 0.8 49 189-245 189-242 (669)
328 PRK14963 DNA polymerase III su 70.5 29 0.00064 42.7 11.4 24 414-437 39-62 (504)
329 PRK05580 primosome assembly pr 70.5 30 0.00066 44.3 11.9 98 773-886 170-267 (679)
330 PF13831 PHD_2: PHD-finger; PD 70.3 1.2 2.6E-05 33.9 -0.4 35 203-244 2-36 (36)
331 COG0552 FtsY Signal recognitio 70.2 50 0.0011 38.1 12.1 128 411-577 139-276 (340)
332 PRK11773 uvrD DNA-dependent he 70.1 14 0.00031 47.7 9.0 71 381-467 8-79 (721)
333 PLN03208 E3 ubiquitin-protein 70.1 1.7 3.6E-05 45.9 0.5 56 191-246 16-77 (193)
334 PRK10917 ATP-dependent DNA hel 69.4 20 0.00044 45.9 10.1 103 773-886 290-392 (681)
335 TIGR01242 26Sp45 26S proteasom 69.4 17 0.00036 42.9 8.7 25 410-434 155-179 (364)
336 KOG0956 PHD finger protein AF1 69.0 1.5 3.4E-05 53.2 -0.0 54 190-245 114-179 (900)
337 PRK08533 flagellar accessory p 68.9 47 0.001 36.5 11.5 44 410-457 23-66 (230)
338 PRK13342 recombination factor 68.8 22 0.00047 42.7 9.7 24 410-433 35-58 (413)
339 PRK11823 DNA repair protein Ra 68.8 51 0.0011 40.0 12.8 50 411-464 80-129 (446)
340 PF13173 AAA_14: AAA domain 68.3 11 0.00025 37.0 6.0 37 532-572 61-100 (128)
341 CHL00206 ycf2 Ycf2; Provisiona 68.3 23 0.00049 49.4 10.2 43 409-458 1628-1670(2281)
342 TIGR03117 cas_csf4 CRISPR-asso 68.0 34 0.00073 43.3 11.2 94 792-903 470-573 (636)
343 PTZ00454 26S protease regulato 68.0 16 0.00035 43.5 8.2 26 409-434 177-202 (398)
344 PRK10919 ATP-dependent DNA hel 67.9 14 0.00031 47.3 8.2 69 383-467 3-72 (672)
345 TIGR01074 rep ATP-dependent DN 67.8 15 0.00033 46.9 8.5 69 383-467 2-71 (664)
346 PRK14955 DNA polymerase III su 67.5 40 0.00087 40.2 11.5 27 411-437 38-64 (397)
347 COG1702 PhoH Phosphate starvat 67.3 8.4 0.00018 44.2 5.3 38 534-573 245-282 (348)
348 PRK13709 conjugal transfer nic 67.1 22 0.00048 49.8 10.1 69 376-456 961-1029(1747)
349 cd03115 SRP The signal recogni 67.1 49 0.0011 34.2 10.8 25 414-438 3-27 (173)
350 PRK06067 flagellar accessory p 67.0 47 0.001 36.3 11.2 52 410-465 24-75 (234)
351 KOG0298 DEAD box-containing he 67.0 2.9 6.2E-05 54.8 1.7 137 778-934 1204-1342(1394)
352 PRK06964 DNA polymerase III su 67.0 35 0.00075 39.9 10.4 48 383-439 2-49 (342)
353 PHA02929 N1R/p28-like protein; 66.4 2.4 5.2E-05 46.6 0.7 46 191-246 172-225 (238)
354 PRK14951 DNA polymerase III su 66.2 40 0.00088 42.5 11.4 26 412-437 39-64 (618)
355 CHL00095 clpC Clp protease ATP 66.0 20 0.00044 47.0 9.2 26 410-435 199-224 (821)
356 TIGR03346 chaperone_ClpB ATP-d 66.0 25 0.00053 46.4 10.0 27 409-435 192-218 (852)
357 PRK14721 flhF flagellar biosyn 65.9 1.5E+02 0.0033 35.7 15.6 75 532-607 269-359 (420)
358 COG3973 Superfamily I DNA and 65.2 16 0.00035 44.9 7.3 52 410-461 225-278 (747)
359 TIGR03689 pup_AAA proteasome A 64.8 19 0.00041 44.3 8.1 27 409-435 214-240 (512)
360 PF00308 Bac_DnaA: Bacterial d 64.5 51 0.0011 35.9 10.7 37 532-568 97-137 (219)
361 PRK00771 signal recognition pa 64.5 67 0.0014 38.9 12.5 37 411-451 95-131 (437)
362 PRK04328 hypothetical protein; 64.5 61 0.0013 36.0 11.5 36 411-450 23-58 (249)
363 cd02037 MRP-like MRP (Multiple 64.5 49 0.0011 34.1 10.1 53 531-587 66-118 (169)
364 PF03354 Terminase_1: Phage Te 64.3 43 0.00094 41.0 11.2 41 412-452 23-63 (477)
365 PRK12727 flagellar biosynthesi 64.2 92 0.002 38.6 13.5 38 411-450 350-387 (559)
366 PRK06731 flhF flagellar biosyn 64.1 1.3E+02 0.0029 33.9 14.1 48 411-462 75-126 (270)
367 TIGR01243 CDC48 AAA family ATP 64.1 24 0.00052 45.7 9.3 42 410-458 486-527 (733)
368 PRK10865 protein disaggregatio 64.0 25 0.00055 46.3 9.5 27 409-435 197-223 (857)
369 KOG0956 PHD finger protein AF1 63.6 3.2 6.9E-05 50.7 1.1 44 195-246 7-57 (900)
370 PRK05563 DNA polymerase III su 63.6 55 0.0012 41.0 11.9 28 410-437 37-64 (559)
371 PHA02926 zinc finger-like prot 63.4 2.2 4.8E-05 45.6 -0.2 50 193-246 170-228 (242)
372 KOG0957 PHD finger protein [Ge 63.3 8.7 0.00019 45.3 4.5 60 151-215 121-192 (707)
373 PF13832 zf-HC5HC2H_2: PHD-zin 63.3 4.8 0.0001 38.7 2.2 32 192-223 54-88 (110)
374 PRK00440 rfc replication facto 63.2 93 0.002 35.4 13.2 24 412-435 39-62 (319)
375 PF01197 Ribosomal_L31: Riboso 63.0 5.4 0.00012 35.2 2.2 45 148-192 12-58 (69)
376 TIGR00643 recG ATP-dependent D 62.9 32 0.00069 43.7 10.0 103 773-886 264-366 (630)
377 PRK07133 DNA polymerase III su 62.6 49 0.0011 42.4 11.2 27 411-437 40-66 (725)
378 PF13481 AAA_25: AAA domain; P 62.6 62 0.0013 33.9 10.7 56 411-466 32-93 (193)
379 TIGR03345 VI_ClpV1 type VI sec 62.5 30 0.00065 45.5 9.8 27 409-435 206-232 (852)
380 PRK13341 recombination factor 62.2 35 0.00076 44.0 10.1 25 409-433 50-74 (725)
381 PRK05973 replicative DNA helic 62.2 92 0.002 34.5 12.1 38 410-451 63-100 (237)
382 PRK13826 Dtr system oriT relax 62.1 47 0.001 44.6 11.3 132 382-578 381-513 (1102)
383 CHL00176 ftsH cell division pr 62.1 32 0.0007 43.6 9.6 25 410-434 215-239 (638)
384 PRK14712 conjugal transfer nic 61.7 54 0.0012 45.7 12.0 149 378-583 831-980 (1623)
385 TIGR02688 conserved hypothetic 61.5 22 0.00047 42.5 7.4 26 409-434 207-232 (449)
386 PF07015 VirC1: VirC1 protein; 60.8 2.5E+02 0.0054 31.0 14.8 39 421-463 12-52 (231)
387 COG1474 CDC6 Cdc6-related prot 60.8 76 0.0017 37.5 11.9 57 373-438 13-69 (366)
388 KOG0740 AAA+-type ATPase [Post 60.4 21 0.00045 42.6 7.0 50 409-465 184-233 (428)
389 PF15446 zf-PHD-like: PHD/FYVE 59.9 5.7 0.00012 40.8 2.0 48 196-243 2-57 (175)
390 PRK08939 primosomal protein Dn 59.6 28 0.00061 40.0 7.9 42 410-455 155-196 (306)
391 PRK14948 DNA polymerase III su 59.2 83 0.0018 39.9 12.5 28 411-438 38-65 (620)
392 COG5151 SSL1 RNA polymerase II 59.1 6.1 0.00013 43.9 2.2 94 137-247 296-420 (421)
393 TIGR00678 holB DNA polymerase 58.8 39 0.00085 35.5 8.4 29 410-438 13-41 (188)
394 PRK11034 clpA ATP-dependent Cl 58.8 36 0.00078 44.1 9.4 26 410-435 206-231 (758)
395 PRK14965 DNA polymerase III su 58.8 91 0.002 39.2 12.8 27 411-437 38-64 (576)
396 COG1435 Tdk Thymidine kinase [ 58.7 59 0.0013 34.7 9.2 34 533-569 83-118 (201)
397 PRK14873 primosome assembly pr 58.6 41 0.0009 42.9 9.7 80 775-869 170-250 (665)
398 PRK08058 DNA polymerase III su 58.6 73 0.0016 37.0 11.2 29 410-438 27-55 (329)
399 TIGR02760 TraI_TIGR conjugativ 58.3 68 0.0015 46.1 12.7 64 381-456 1018-1081(1960)
400 PRK04195 replication factor C 58.2 74 0.0016 39.0 11.7 25 410-434 38-62 (482)
401 KOG1002 Nucleotide excision re 57.7 3.1 6.8E-05 49.1 -0.3 71 162-246 514-584 (791)
402 TIGR00416 sms DNA repair prote 56.8 91 0.002 38.0 11.9 51 410-464 93-143 (454)
403 TIGR02639 ClpA ATP-dependent C 56.7 50 0.0011 42.8 10.3 27 410-436 202-228 (731)
404 PF13639 zf-RING_2: Ring finge 56.7 2.4 5.1E-05 33.6 -1.1 38 195-243 2-43 (44)
405 PRK14953 DNA polymerase III su 56.6 75 0.0016 39.1 11.3 25 412-436 39-63 (486)
406 TIGR01073 pcrA ATP-dependent D 56.4 28 0.0006 45.1 8.0 69 382-466 4-73 (726)
407 COG0630 VirB11 Type IV secreto 56.4 65 0.0014 37.2 10.1 53 523-582 208-260 (312)
408 COG3972 Superfamily I DNA and 56.3 49 0.0011 39.9 9.0 39 532-573 295-334 (660)
409 PRK10416 signal recognition pa 56.2 1.7E+02 0.0036 34.0 13.4 33 414-450 117-149 (318)
410 cd00984 DnaB_C DnaB helicase C 56.1 1E+02 0.0022 33.7 11.3 48 410-460 12-63 (242)
411 PRK14723 flhF flagellar biosyn 55.7 1.9E+02 0.004 37.6 14.7 36 414-451 188-223 (767)
412 PRK14950 DNA polymerase III su 55.3 73 0.0016 40.2 11.1 25 412-436 39-63 (585)
413 PRK08760 replicative DNA helic 54.9 1.4E+02 0.0031 36.6 13.3 53 410-465 228-280 (476)
414 PRK06995 flhF flagellar biosyn 54.8 2.1E+02 0.0045 35.2 14.4 74 532-606 334-423 (484)
415 cd00162 RING RING-finger (Real 54.8 3.3 7.2E-05 31.9 -0.5 41 196-245 2-43 (45)
416 COG0467 RAD55 RecA-superfamily 54.7 1.1E+02 0.0024 34.1 11.5 38 410-451 22-59 (260)
417 TIGR01425 SRP54_euk signal rec 54.5 3E+02 0.0066 33.2 15.5 34 414-451 103-136 (429)
418 COG0470 HolB ATPase involved i 54.4 41 0.00088 38.4 8.2 27 413-439 26-52 (325)
419 PF13771 zf-HC5HC2H: PHD-like 54.0 9.3 0.0002 35.2 2.3 51 191-244 34-87 (90)
420 smart00184 RING Ring finger. E 54.0 2.9 6.3E-05 31.0 -0.9 29 196-224 1-29 (39)
421 PF11793 FANCL_C: FANCL C-term 53.8 3 6.5E-05 36.9 -1.0 52 195-246 4-64 (70)
422 PRK07399 DNA polymerase III su 53.7 1.2E+02 0.0027 34.9 11.9 30 409-438 24-53 (314)
423 PF01443 Viral_helicase1: Vira 53.2 28 0.0006 37.8 6.2 40 532-574 62-101 (234)
424 PRK06305 DNA polymerase III su 53.1 66 0.0014 39.2 9.9 27 411-437 39-65 (451)
425 COG0254 RpmE Ribosomal protein 52.8 7.8 0.00017 34.6 1.4 46 146-191 11-58 (75)
426 KOG4443 Putative transcription 52.6 4.4 9.5E-05 49.6 -0.2 48 195-247 20-72 (694)
427 KOG0317 Predicted E3 ubiquitin 52.4 3.9 8.5E-05 45.4 -0.6 42 194-245 240-281 (293)
428 PRK12724 flagellar biosynthesi 52.3 2.1E+02 0.0046 34.5 13.6 75 531-606 298-391 (432)
429 COG0003 ArsA Predicted ATPase 52.3 52 0.0011 38.1 8.4 29 421-453 12-42 (322)
430 TIGR01243 CDC48 AAA family ATP 51.7 44 0.00094 43.4 8.6 26 409-434 210-235 (733)
431 COG1198 PriA Primosomal protei 51.4 40 0.00086 43.2 7.9 83 770-867 222-304 (730)
432 TIGR00580 mfd transcription-re 51.2 69 0.0015 42.6 10.3 100 774-884 481-580 (926)
433 PRK10867 signal recognition pa 50.9 1.3E+02 0.0028 36.4 11.8 36 412-450 101-136 (433)
434 TIGR00064 ftsY signal recognit 50.6 4.1E+02 0.009 29.9 16.1 35 413-451 74-108 (272)
435 TIGR02785 addA_Gpos recombinat 50.3 71 0.0015 44.0 10.6 113 410-543 13-126 (1232)
436 COG2256 MGS1 ATPase related to 50.3 89 0.0019 37.0 9.7 23 409-431 46-68 (436)
437 COG5222 Uncharacterized conser 50.2 8.3 0.00018 42.6 1.4 61 194-264 275-345 (427)
438 PHA03333 putative ATPase subun 50.1 1E+02 0.0023 39.1 10.9 37 413-452 189-225 (752)
439 PRK06647 DNA polymerase III su 49.6 1.5E+02 0.0033 37.1 12.6 28 410-437 37-64 (563)
440 PRK06904 replicative DNA helic 49.2 2.1E+02 0.0044 35.2 13.3 52 410-464 220-271 (472)
441 COG0593 DnaA ATPase involved i 49.2 1E+02 0.0022 36.9 10.3 41 532-572 175-221 (408)
442 TIGR02655 circ_KaiC circadian 49.0 1.1E+02 0.0024 37.6 11.1 52 410-465 262-313 (484)
443 PHA00012 I assembly protein 48.7 40 0.00086 38.9 6.5 25 415-439 5-29 (361)
444 PF05127 Helicase_RecD: Helica 48.7 9.9 0.00021 40.0 1.7 34 532-570 90-123 (177)
445 PF02318 FYVE_2: FYVE-type zin 48.6 9.6 0.00021 37.3 1.5 43 194-245 55-102 (118)
446 TIGR00570 cdk7 CDK-activating 48.3 6.9 0.00015 44.4 0.5 41 195-245 5-51 (309)
447 PRK07414 cob(I)yrinic acid a,c 47.7 49 0.0011 34.9 6.6 53 530-585 113-169 (178)
448 KOG3970 Predicted E3 ubiquitin 47.4 4.8 0.0001 42.7 -0.8 74 169-245 20-102 (299)
449 PHA02542 41 41 helicase; Provi 47.0 2E+02 0.0044 35.2 12.8 45 412-460 191-235 (473)
450 PRK09302 circadian clock prote 46.6 1.2E+02 0.0026 37.5 11.0 51 411-465 273-323 (509)
451 TIGR00959 ffh signal recogniti 46.4 1.4E+02 0.0031 36.0 11.2 36 412-450 100-135 (428)
452 KOG3576 Ovo and related transc 46.3 18 0.00038 38.2 3.0 66 147-219 115-187 (267)
453 TIGR01241 FtsH_fam ATP-depende 46.3 29 0.00062 42.8 5.5 26 409-434 86-111 (495)
454 PF05496 RuvB_N: Holliday junc 46.2 54 0.0012 35.9 6.9 19 411-429 50-68 (233)
455 PF06564 YhjQ: YhjQ protein; 45.9 1.4E+02 0.003 33.2 10.1 32 421-456 12-45 (243)
456 PRK14954 DNA polymerase III su 45.6 1.9E+02 0.0042 36.7 12.6 28 410-437 37-64 (620)
457 PF15227 zf-C3HC4_4: zinc fing 45.6 4.6 0.0001 31.9 -1.0 28 210-243 15-42 (42)
458 KOG0952 DNA/RNA helicase MER3/ 45.0 29 0.00063 45.2 5.2 115 410-547 942-1061(1230)
459 PRK14971 DNA polymerase III su 44.9 1.3E+02 0.0028 38.3 10.9 27 410-436 38-64 (614)
460 PRK05917 DNA polymerase III su 44.6 1.4E+02 0.0031 34.0 10.2 29 410-438 18-46 (290)
461 PRK09302 circadian clock prote 44.3 1.6E+02 0.0034 36.4 11.6 53 410-465 30-82 (509)
462 cd01125 repA Hexameric Replica 43.8 3.8E+02 0.0083 29.3 13.5 52 413-464 3-65 (239)
463 PF14446 Prok-RING_1: Prokaryo 43.8 14 0.00029 31.0 1.4 29 195-223 7-39 (54)
464 KOG0320 Predicted E3 ubiquitin 43.3 5.2 0.00011 41.4 -1.3 30 207-246 147-176 (187)
465 KOG0738 AAA+-type ATPase [Post 43.0 25 0.00054 41.1 3.9 46 412-465 246-292 (491)
466 KOG1701 Focal adhesion adaptor 42.8 9.1 0.0002 44.7 0.4 21 173-193 363-383 (468)
467 PRK10689 transcription-repair 42.7 1.2E+02 0.0025 41.5 10.6 99 774-883 630-728 (1147)
468 PRK09165 replicative DNA helic 42.1 3E+02 0.0065 34.0 13.4 53 411-463 217-280 (497)
469 PF05191 ADK_lid: Adenylate ki 42.0 15 0.00033 28.0 1.4 28 150-178 2-29 (36)
470 KOG0383 Predicted helicase [Ge 41.8 5.7 0.00012 50.0 -1.5 54 188-246 501-554 (696)
471 PF12678 zf-rbx1: RING-H2 zinc 41.7 8.5 0.00018 34.3 -0.1 26 209-244 48-73 (73)
472 PRK08840 replicative DNA helic 41.6 3.2E+02 0.0069 33.5 13.3 51 410-463 216-266 (464)
473 cd01129 PulE-GspE PulE/GspE Th 41.5 1.9E+02 0.0041 32.5 10.7 41 383-435 64-104 (264)
474 KOG2231 Predicted E3 ubiquitin 41.5 10 0.00022 47.4 0.5 90 150-245 100-214 (669)
475 KOG0739 AAA+-type ATPase [Post 41.3 29 0.00063 39.2 3.9 48 411-465 166-213 (439)
476 PTZ00396 Casein kinase II subu 40.9 13 0.00029 41.1 1.3 34 210-244 122-155 (251)
477 cd01131 PilT Pilus retraction 40.7 72 0.0016 34.0 6.9 22 414-435 4-25 (198)
478 PF13923 zf-C3HC4_2: Zinc fing 40.6 9 0.0002 29.4 -0.0 38 196-243 1-39 (39)
479 KOG4628 Predicted E3 ubiquitin 40.4 13 0.00029 42.9 1.3 43 194-245 230-275 (348)
480 COG2109 BtuR ATP:corrinoid ade 40.2 2.9E+02 0.0063 29.5 10.8 57 530-586 120-180 (198)
481 KOG1512 PHD Zn-finger protein 39.9 9.9 0.00021 41.8 0.1 39 202-243 276-314 (381)
482 COG1419 FlhF Flagellar GTP-bin 39.8 6.4E+02 0.014 30.2 14.7 30 559-588 312-341 (407)
483 PHA00350 putative assembly pro 39.7 58 0.0013 38.8 6.4 17 415-431 5-21 (399)
484 PRK12726 flagellar biosynthesi 39.4 4.3E+02 0.0093 31.6 13.2 49 411-463 206-258 (407)
485 PRK08506 replicative DNA helic 39.4 3.9E+02 0.0084 32.8 13.7 49 410-462 191-239 (472)
486 PRK07276 DNA polymerase III su 39.3 2.7E+02 0.0059 31.8 11.4 48 383-439 3-50 (290)
487 TIGR03499 FlhF flagellar biosy 39.3 2.2E+02 0.0048 32.2 10.9 37 412-450 195-231 (282)
488 KOG0978 E3 ubiquitin ligase in 39.2 5.4 0.00012 49.9 -2.2 42 195-245 645-686 (698)
489 PF02223 Thymidylate_kin: Thym 38.6 54 0.0012 34.3 5.5 41 420-464 5-47 (186)
490 PF07649 C1_3: C1-like domain; 38.3 14 0.00029 26.9 0.6 26 195-220 2-30 (30)
491 COG2812 DnaX DNA polymerase II 38.2 58 0.0013 40.1 6.2 29 409-437 36-64 (515)
492 TIGR02655 circ_KaiC circadian 37.8 2.3E+02 0.0049 34.9 11.4 53 410-465 20-72 (484)
493 TIGR00665 DnaB replicative DNA 37.7 4.9E+02 0.011 31.3 14.2 47 411-460 195-241 (434)
494 TIGR02640 gas_vesic_GvpN gas v 37.7 82 0.0018 35.2 7.0 24 410-433 20-43 (262)
495 PF12846 AAA_10: AAA-like doma 37.3 59 0.0013 36.4 5.9 46 412-461 2-47 (304)
496 KOG2164 Predicted E3 ubiquitin 37.1 11 0.00024 45.1 -0.0 48 193-245 186-233 (513)
497 COG3598 RepA RecA-family ATPas 37.0 98 0.0021 35.6 7.2 26 410-435 88-113 (402)
498 PF12861 zf-Apc11: Anaphase-pr 37.0 13 0.00027 34.2 0.3 43 196-245 35-79 (85)
499 PRK05342 clpX ATP-dependent pr 36.7 73 0.0016 38.3 6.7 24 411-434 108-131 (412)
500 PF01286 XPA_N: XPA protein N- 36.5 18 0.00039 27.3 1.0 29 150-178 4-32 (34)
No 1
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=6.8e-164 Score=1415.41 Aligned_cols=939 Identities=38% Similarity=0.574 Sum_probs=792.0
Q ss_pred CCceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCccccccccccccCCCc
Q 001149 147 SEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISE 226 (1138)
Q Consensus 147 ~~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~ 226 (1138)
-..+.|+.|.+.....+.||..++..|+.|.....+ ....+++..+..|.||+.--.+.-|..|++.||..|+.++.+.
T Consensus 447 k~~~r~~~~~K~~vsd~e~peekkt~~k~ksR~~~~-~sSese~d~d~eee~~s~~~~~~e~~~~~k~~sa~e~~~esd~ 525 (1567)
T KOG1015|consen 447 KPRYRRLLRHKLTVSDGESPEEKKTKPKEKSRNRRK-VSSESEEDSDFEEEGVSEEVSESEDEQRPKTRSAKEAELESDQ 525 (1567)
T ss_pred Ccchhhhhhcchhhcccccchhhhcchhhhccchhh-hcccccccchhhcccccCccccchhhhcccccchHHHhhccch
Confidence 455789999999999999999999999998877653 3455566667799999999999999999999999999999999
Q ss_pred ccccccccCCCceeecCCcchHhHHHHHHHhhhccccccccCCCCCCCCccccCCcccccchhhhHhHHhhhccccccHH
Q 001149 227 ACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEE 306 (1138)
Q Consensus 227 ~~~~~~~~~~~W~C~~C~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~d~sd~~~~~~~~~~~~~~k~ir~~l~d~~l~e~ 306 (1138)
..++ ....-.|.|.+|++.+.+ .++.++.+........++++.++.+.+..|++..+|.|+||+||+|++|++|..+
T Consensus 526 Evmp-qkkkr~~~~~~sds~~e~--kse~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~ke 602 (1567)
T KOG1015|consen 526 EVMP-QKKKRRRIKVQSDSSSEN--KSESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKE 602 (1567)
T ss_pred hhhh-hhhhcCceeeecCCcccc--cccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchh
Confidence 9888 445566999999999988 6777888777666555555555443334677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhhhhhhhcccccccCCCCCCCchhhhhcccccccchhhccccCCccccCCchhhhhc
Q 001149 307 TKRKIAIEKERQERLKSL---QVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKL 383 (1138)
Q Consensus 307 t~~~~~~e~~r~~rl~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~vp~~l~~~L 383 (1138)
|+.|+++|++|++||+.. ++.++.+. +.....+++ ....++++++..+..+++++||.+|...|
T Consensus 603 T~~a~k~EkeRrkRie~~~~rqK~~n~i~-----ied~s~~~e--------~it~~lVld~deet~e~~VqV~rslv~kL 669 (1567)
T KOG1015|consen 603 TQNALKEEKERRKRIEEERERQKLRNVIE-----IEDASPTKE--------PITTKLVLDEDEETKEPLVQVHRSLVIKL 669 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhceee-----eccCCCCcc--------ccceeEEecchhhhccchhhccHhHHhhc
Confidence 999999999999999983 33333221 111122222 12237889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 384 KAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 384 rphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
+|||..||+|||+++++++.|. ..++|.||||||+||||||+|+|+|+++++.....+.+++|||||.+++.||.+||.
T Consensus 670 KpHQv~GvqFMwd~~~eSlkr~-~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFe 748 (1567)
T KOG1015|consen 670 KPHQVDGVQFMWDCCCESLKRT-KKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFE 748 (1567)
T ss_pred CcccccchhHHHHHHHHHHHhh-cCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHH
Confidence 9999999999999999999997 458999999999999999999999999999999899999999999999999999999
Q ss_pred HHCCC--CCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhh-ccCCCEEEEc
Q 001149 464 KWRPS--ELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL-QDGPDILVCD 539 (1138)
Q Consensus 464 kw~p~--~~~~l~V~~~~~~~~-~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l-~~~~dlVIlD 539 (1138)
+|.++ ...++.|+.+...++ ..|...+..|+..+||+|++|++||+|+.++.+++++....+...+ .++||+||||
T Consensus 749 kWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCD 828 (1567)
T KOG1015|consen 749 KWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCD 828 (1567)
T ss_pred HhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEec
Confidence 99985 234689999888776 7889999999999999999999999999999998888666555544 4599999999
Q ss_pred CCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHH
Q 001149 540 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKI 619 (1138)
Q Consensus 540 EaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~~ 619 (1138)
|||.|||..|.+++|+.+++++|||+|||||+||||+|||||++|++|++||+..+|+++|.+||.+|++.+++..++.+
T Consensus 829 E~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~ 908 (1567)
T KOG1015|consen 829 EGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRV 908 (1567)
T ss_pred chhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccc--cchHHHHhhHHHHHHHH
Q 001149 620 MNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR--VSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 620 ~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~--~~~~~~~~~~l~~l~~L 697 (1138)
|++|+|+|+.+|++||+|+++.++..+||||++|||.|.||+.|+.||.+|++ +.+.... ....+.+.++|+.|+.|
T Consensus 909 Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~g~~arlf~dfqml 987 (1567)
T KOG1015|consen 909 MKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGRGAGARLFQDFQML 987 (1567)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 3333222 12223667899999999
Q ss_pred HHHhcCcccccccccc----CCCCCcc---c--cCCC----------------------CccccccccccC------CCC
Q 001149 698 AQIWNHPGILQLTKDK----GYPSRED---A--EDSS----------------------SDENMDYNVVIG------EKP 740 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~----~~~~~e~---~--~d~~----------------------~d~~~d~~~~~~------~~~ 740 (1138)
++||+||+.+++.... .+.+..+ . ++++ .|+..+.....+ .+.
T Consensus 988 srIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~ 1067 (1567)
T KOG1015|consen 988 SRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKN 1067 (1567)
T ss_pred HHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhh
Confidence 9999999999865431 1111111 1 1110 022222222222 111
Q ss_pred ccchhhhcC------------------C----CCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEE
Q 001149 741 RNMNDFLQG------------------K----NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 798 (1138)
Q Consensus 741 ~~~~d~~~~------------------~----~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLV 798 (1138)
+...++..+ . ....-.+..||.+++....+..+..|+||.+|++||..+.+.|+|+||
T Consensus 1068 rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLV 1147 (1567)
T KOG1015|consen 1068 RKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLV 1147 (1567)
T ss_pred hhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEE
Confidence 112111111 0 011123457999999999999999999999999999999999999999
Q ss_pred EcCCcchHHHHHHHHhhCCCCCC-----------CcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecc
Q 001149 799 FSQSIPTLDLIEFYLSKLPRPGK-----------QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTR 867 (1138)
Q Consensus 799 FSq~~~~ld~Le~~L~~l~~~~~-----------~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTk 867 (1138)
|||++.+|++|+.||..+.+.++ .|. |..|.+|+||||+++..+|+++.++||++.|-++++|||||+
T Consensus 1148 FSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGk-W~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTR 1226 (1567)
T KOG1015|consen 1148 FSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGK-WLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTR 1226 (1567)
T ss_pred eecccchhHHHHHHHHhhcccCccccccccccccccc-eecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeec
Confidence 99999999999999998876654 344 999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccccccccc
Q 001149 868 AGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT 947 (1138)
Q Consensus 868 aGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~~~~r~ 947 (1138)
||++||||.+||||||||.+|||+++.|+|+||||+||+||||||||++.||||++||.||++|+.++.+|||++|+.||
T Consensus 1227 AGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rh 1306 (1567)
T KOG1015|consen 1227 AGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERH 1306 (1567)
T ss_pred cCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcccCCCCCCCChhhhhhcccCCCCCccccccccccCCCCCCCCchHHHHHHhhccCCCcccccccchhhccc
Q 001149 948 ISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRWISNYHEHETLLQE 1027 (1138)
Q Consensus 948 ~s~~el~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~~h~sll~~ 1027 (1138)
|+++||.+||+|+++-. ++- + ...++.+|+|++++++|..| .+.|++||||||||.+
T Consensus 1307 y~~neLteLy~fep~~d-dp~-----------------s----Er~~~~lpKdrllae~l~~~-q~~i~~y~ehdSll~~ 1363 (1567)
T KOG1015|consen 1307 YTMNELTELYTFEPDLD-DPN-----------------S----ERDTPMLPKDRLLAELLQIH-QEHIVGYHEHDSLLDH 1363 (1567)
T ss_pred hhHhhhHHHhhcCCccC-Ccc-----------------c----ccccccCCchhHHHHHHHHH-HHHhhhhhhhhhhhcc
Confidence 99999999999997421 100 0 01334557999999999998 7889999999999999
Q ss_pred chhhcCCHHHHHHHHHHHHHHh------------------------------------------------hhhhcccccc
Q 001149 1028 NEEERLSKEEQDMAWEVFRKSL------------------------------------------------EWEEVQRVTV 1059 (1138)
Q Consensus 1028 ~~~~~l~~~e~~~a~~~~~~~~------------------------------------------------~~~~~~~~~~ 1059 (1138)
.++++||++|++.||.+|+.+. +|+.++|+|.
T Consensus 1364 ~e~eelteee~k~aWaeye~Ek~~~~~r~~~pt~t~~p~~~~~q~~Q~~~~nR~~~~~~~nq~~~d~~~~e~ekv~r~~n 1443 (1567)
T KOG1015|consen 1364 KEEEELTEEERKAAWAEYEAEKKVLTMRFNIPTGTNLPPVSFNQQTQYIPFNRGALSAMSNQQLEDLINQEREKVVRATN 1443 (1567)
T ss_pred hhHHHHHHHhhhhhhhhHHhhhccccccccCCCCCCCCccchhhhhhhhhhhhhhhhhhhHHHHHHHHhhhhhheeeccc
Confidence 9999999999999999999875 1444455555
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccCccccccchhhhhhhcchhhHHHHhhcCCCCCcccccccccccccccccc
Q 001149 1060 DESISERKPASMSNLTPPAPETSSVTQPRGILRSHVVIRKCTNLSHKLTLRSQGTKPGCSTVCGECAQEISWENCK 1135 (1138)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1135 (1138)
...++-..|. ..-...+.+++... .|++|+++.||...|.+|++++|-++|-.++|++|+..+.|++.-
T Consensus 1444 s~tavr~~pl-~~ll~~il~~~~~~------nr~qv~~~n~trqa~qetd~k~~~~~~~dll~~~~~~v~~v~~m~ 1512 (1567)
T KOG1015|consen 1444 SVTAVRIQPL-EDLLSAILKENMNL------NRAQVQALNLTRQASQETDVKRREAIYNDLLTKQQMLVSCVQRML 1512 (1567)
T ss_pred Cccceeeccc-HHHHhhhccccchh------hHhhhHhhhhHHHHHHHHhhhccchhhHHHHHhhcceeeeHHHHH
Confidence 4444444444 32222333444443 899999999999999999999999999999999999999999753
No 2
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1e-110 Score=955.87 Aligned_cols=667 Identities=39% Similarity=0.649 Sum_probs=552.4
Q ss_pred cccccchhhccccCCccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 356 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 356 ~~~~~i~~~~~~~~~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
...++++|..++++++.+++.+.|...|+|||+-||+|||+++++|++|++. +.|+||||||.||||||+|+|+|+..+
T Consensus 228 ~~Grv~VN~~HPeeee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykk-SsGFGCILAHSMGLGKTlQVisF~dif 306 (1387)
T KOG1016|consen 228 KEGRVLVNAGHPEEEEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKK-SSGFGCILAHSMGLGKTLQVISFSDIF 306 (1387)
T ss_pred ccCcEEEecCCCCCCcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccc-cCCcceeeeeccccCceeEEeehhHHH
Confidence 3456778889999999999999999999999999999999999999999987 689999999999999999999999999
Q ss_pred HHhcccCCCceEEEeCcchHHHHHHHHHHHCCCC-------CCCeEEEEecCcch--hHHHHHHHHHhhcCCEEEEccch
Q 001149 436 MRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE-------LKPLRVFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTA 506 (1138)
Q Consensus 436 ~~~~~~~~k~vLIV~P~sll~qW~~E~~kw~p~~-------~~~l~V~~~~~~~~--~~r~~~l~~~~~~~~VvIity~~ 506 (1138)
+++.. +|++|+|+|.+++.||..||.+|.|.- ...+.|+++.+..+ ..|++++..|...|||++++|+|
T Consensus 307 lRhT~--AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYem 384 (1387)
T KOG1016|consen 307 LRHTK--AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEM 384 (1387)
T ss_pred hhcCc--cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHH
Confidence 99865 789999999999999999999999862 34588999888654 68999999999999999999999
Q ss_pred hhccccccccc-----------------------chhhHHHHhh-hhccCCCEEEEcCCcccCCcccHHHHHHHhcccCe
Q 001149 507 FRNLSFGKHVK-----------------------DRNMAREICH-ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQR 562 (1138)
Q Consensus 507 ~r~l~~~~~~~-----------------------~~~~~~~~~~-~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~ 562 (1138)
||.+...+..+ ...+...+.. ++..++|+|||||+|+|||..+.++.+++.|+++|
T Consensus 385 fRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrR 464 (1387)
T KOG1016|consen 385 FRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRR 464 (1387)
T ss_pred HHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhce
Confidence 99875431110 0122223333 44569999999999999999999999999999999
Q ss_pred EEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q 001149 563 RIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 642 (1138)
Q Consensus 563 RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~ 642 (1138)
||+|||.|+||||.|||||++|++|++||+..+|.++|.+||.+|++.++++.++++|++|+|+||.+|.+||+||+..+
T Consensus 465 RiVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~Htv 544 (1387)
T KOG1016|consen 465 RIVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTV 544 (1387)
T ss_pred eEEEeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCcccc
Q 001149 643 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAE 722 (1138)
Q Consensus 643 v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~ 722 (1138)
++..||.|.|+|+.|++|..|++||+.|+.-.... ........-+.+.+|..+++|||||++++...++.....++..
T Consensus 545 Lk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~--~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl 622 (1387)
T KOG1016|consen 545 LKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKRE--IAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDL 622 (1387)
T ss_pred HhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHh--hccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999998321110 0011112237899999999999999998865543211111100
Q ss_pred C------------------CCCccccccccccCCCCccchhhhcCCCC-------Cccchh-hhhhhhhhcccccccCCC
Q 001149 723 D------------------SSSDENMDYNVVIGEKPRNMNDFLQGKND-------DGFFQK-DWWNDLLHEHTYKELDYS 776 (1138)
Q Consensus 723 d------------------~~~d~~~d~~~~~~~~~~~~~d~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~S 776 (1138)
+ ...+.........+.+.....+....... .....+ .|..+++..+..+.++.+
T Consensus 623 ~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~ 702 (1387)
T KOG1016|consen 623 RVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENG 702 (1387)
T ss_pred hHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCC
Confidence 0 00000000000001111101111111111 111222 788899999999999999
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCC------CcccccCCceEEEEeCCCCHHHHHHHHHH
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK------QGKLWKKGKDWYRLDGRTESSERQKLVER 850 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~------~~~~~~~Gi~~~rldGsts~~eR~~~i~~ 850 (1138)
+|+..+++++.+....|+|+|||||....|++|+++|.+...+.+ .+..|.++..|+++||.++..+|+++|++
T Consensus 703 pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinq 782 (1387)
T KOG1016|consen 703 PKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQ 782 (1387)
T ss_pred CceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHh
Confidence 999999999999999999999999999999999999998765433 34569999999999999999999999999
Q ss_pred HcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHH
Q 001149 851 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVT 930 (1138)
Q Consensus 851 Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~ 930 (1138)
||++.+-. ++||+||++|..||||.+||++||||..|||+++.||++|+||+||+|+|||||||+.+|+|.+||+||+.
T Consensus 783 fN~e~~ls-Wlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIs 861 (1387)
T KOG1016|consen 783 FNSEPGLS-WLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQIS 861 (1387)
T ss_pred ccCCCCce-eeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHh
Confidence 99976654 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccccccccCCHHHHHHcccCCCCCCCChhhhhhcccCCCCCccccccccccCCCCCCCCchHHHHHHhhcc
Q 001149 931 KEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKH 1010 (1138)
Q Consensus 931 K~~l~~~vvd~~~~~r~~s~~el~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 1010 (1138)
|++|.++|||+.++..+||+.|+..|+.|.+... +...++. + +.+..+.|..+..+-...
T Consensus 862 KqGmsdRvVDd~np~an~s~Ke~enLl~~~ea~~-~~~~~vn--------------L-----~~~g~~~~e~~~~~t~~m 921 (1387)
T KOG1016|consen 862 KQGMSDRVVDDANPDANISQKELENLLMYDEAQD-VNHDKVN--------------L-----TDDGDFGDEVLDSITKRM 921 (1387)
T ss_pred hccchhhhhcccCccccccHHHHHHHhhhhhccc-Cccccce--------------e-----cCCCCccchhhhhhhhhc
Confidence 9999999999999999999999999999877321 1111111 0 011123466666676666
Q ss_pred CCCcccc-cccchhhcccchhhcCCHHHHHHHHHHHHHH
Q 001149 1011 HPRWISN-YHEHETLLQENEEERLSKEEQDMAWEVFRKS 1048 (1138)
Q Consensus 1011 ~~~~i~~-~~~h~sll~~~~~~~l~~~e~~~a~~~~~~~ 1048 (1138)
.|.++.+ +|+|++|+-+.+...|++.|+++|...|++.
T Consensus 922 sp~~~~KkPf~he~l~~n~~shsl~k~EK~~a~~~~~~d 960 (1387)
T KOG1016|consen 922 SPMFAGKKPFLHETLIMNSESHSLSKQEKREAQLLFDRD 960 (1387)
T ss_pred CcccccCCCccccccCcCccccchhHHHHhHhhhhhhhh
Confidence 6778755 9999999999999999999999999999997
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.8e-104 Score=919.10 Aligned_cols=497 Identities=37% Similarity=0.621 Sum_probs=444.3
Q ss_pred CccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEE
Q 001149 370 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 449 (1138)
Q Consensus 370 ~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV 449 (1138)
+..+.||..|...|+|||++||+|||+.+. .+.||||+||||||||+|+|+|++.++..+.. .+|+|||
T Consensus 193 ~~~~~vPg~I~~~Lf~yQreGV~WL~~L~~----------q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~-~~paLIV 261 (923)
T KOG0387|consen 193 EGGFKVPGFIWSKLFPYQREGVQWLWELYC----------QRAGGILGDEMGLGKTIQIISFLAALHHSGKL-TKPALIV 261 (923)
T ss_pred cccccccHHHHHHhhHHHHHHHHHHHHHHh----------ccCCCeecccccCccchhHHHHHHHHhhcccc-cCceEEE
Confidence 456899999999999999999999999874 46899999999999999999999999887543 4899999
Q ss_pred eCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHH----------HH-HHHHHhhcCCEEEEccchhhcccccccccc
Q 001149 450 TPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRR----------AE-LLAKWRAKGGVFLIGYTAFRNLSFGKHVKD 518 (1138)
Q Consensus 450 ~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r----------~~-~l~~~~~~~~VvIity~~~r~l~~~~~~~~ 518 (1138)
||++++.||.+||++|+|. ++|+++|+.....| .. +.......++|+||+|+.|+...
T Consensus 262 CP~Tii~qW~~E~~~w~p~----~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~------- 330 (923)
T KOG0387|consen 262 CPATIIHQWMKEFQTWWPP----FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG------- 330 (923)
T ss_pred ccHHHHHHHHHHHHHhCcc----eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC-------
Confidence 9999999999999999997 89999998765211 11 11222356789999999998532
Q ss_pred hhhHHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHh
Q 001149 519 RNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 598 (1138)
Q Consensus 519 ~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~ 598 (1138)
..++...|++||+||||+|||++|+++.+++++++.+||+|||||||||+.|||+|++|+.|+.||+...|.+
T Consensus 331 -------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~ 403 (923)
T KOG0387|consen 331 -------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQ 403 (923)
T ss_pred -------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHh
Confidence 1345568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh-cCCCCeEEEEEecCCHHHHHHHHHHHHhhccc
Q 001149 599 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFT 677 (1138)
Q Consensus 599 ~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~-~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~ 677 (1138)
.|..||..|++.++++..++...+++-.|+.+|+||++||+++++.. .||.|.+.|++|.||+.|+.+|+.|++.....
T Consensus 404 ~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~ 483 (923)
T KOG0387|consen 404 NFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVN 483 (923)
T ss_pred hhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 99999999999999999999999998854321
Q ss_pred ccccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccch
Q 001149 678 NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQ 757 (1138)
Q Consensus 678 ~~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~ 757 (1138)
. .-....+.|.++..||+|||||+++....+..
T Consensus 484 ~----i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~------------------------------------------- 516 (923)
T KOG0387|consen 484 K----ILNGKRNCLSGIDILRKICNHPDLLDRRDEDE------------------------------------------- 516 (923)
T ss_pred H----HHcCCccceechHHHHhhcCCcccccCccccc-------------------------------------------
Confidence 1 01122467899999999999999986421100
Q ss_pred hhhhhhhhhcccc-cccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEe
Q 001149 758 KDWWNDLLHEHTY-KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 836 (1138)
Q Consensus 758 ~~~~~~l~~~~~~-~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rld 836 (1138)
....++ +.+..||||.+|..+|..|...|+|||+|||...|||+|+.+|.. ..|+.|+|||
T Consensus 517 -------~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~-----------~~~ysylRmD 578 (923)
T KOG0387|consen 517 -------KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR-----------AKGYSYLRMD 578 (923)
T ss_pred -------ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh-----------cCCceEEEec
Confidence 001111 446779999999999999999999999999999999999999984 2699999999
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEec
Q 001149 837 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 916 (1138)
Q Consensus 837 Gsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~ 916 (1138)
|+|+...|+.+|++||+ +..+.|||++|+|||+|+|||+|||||||||+|||++|.||..|||||||+|.|.||||++
T Consensus 579 GtT~~~~R~~lVd~Fne--~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNE--DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred CCCccchhhHHHHhhcC--CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 99999999999999998 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcccccccccCCHHHHHHcccCCCC
Q 001149 917 HGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDD 962 (1138)
Q Consensus 917 ~gTiEekI~~rq~~K~~l~~~vvd~~~~~r~~s~~el~~Lf~~~~~ 962 (1138)
.|||||+||.||+.|+.|+++++....+.|+|...+|.+||.+.+.
T Consensus 657 ~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 657 AGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999885
No 4
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.1e-93 Score=820.87 Aligned_cols=483 Identities=34% Similarity=0.509 Sum_probs=411.8
Q ss_pred CCchhh-hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc
Q 001149 375 IPSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 453 (1138)
Q Consensus 375 vp~~l~-~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s 453 (1138)
-|..+. +.|||||++|+.||...+ ..|-+|||||+||||||+|+|+|+.++....+ -.+|+||+||.|
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~----------engingILaDEMGLGKTlQtIs~l~yl~~~~~-~~GPfLVi~P~S 227 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLY----------ENGINGILADEMGLGKTLQTISLLGYLKGRKG-IPGPFLVIAPKS 227 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHH----------hcCcccEeehhcccchHHHHHHHHHHHHHhcC-CCCCeEEEeeHh
Confidence 477776 899999999999998765 46789999999999999999999998866433 257999999999
Q ss_pred hHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhh--cCCEEEEccchhhcccccccccchhhHHHHhhhhcc
Q 001149 454 VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA--KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 531 (1138)
Q Consensus 454 ll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~--~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~ 531 (1138)
++.||.+||.+|+|. +++..++|.. ..|...+..... ..+|+||||++.-. ++ ..+-..
T Consensus 228 tL~NW~~Ef~rf~P~----l~~~~~~Gdk-~eR~~~~r~~~~~~~fdV~iTsYEi~i~--------dk------~~lk~~ 288 (971)
T KOG0385|consen 228 TLDNWMNEFKRFTPS----LNVVVYHGDK-EERAALRRDIMLPGRFDVCITSYEIAIK--------DK------SFLKKF 288 (971)
T ss_pred hHHHHHHHHHHhCCC----cceEEEeCCH-HHHHHHHHHhhccCCCceEeehHHHHHh--------hH------HHHhcC
Confidence 999999999999998 8999999865 455555554433 56899999998532 22 222334
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 611 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~ 611 (1138)
.|.++||||||+|||.+|.+++.++.+.+.+|++|||||+|||+.|||+|++||.|++|++..+|..+|......+.
T Consensus 289 ~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~--- 365 (971)
T KOG0385|consen 289 NWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGD--- 365 (971)
T ss_pred CceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987533221
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 001149 612 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 691 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l 691 (1138)
.. -...||..|+||++||.+.+|...||||.|.+++|.||+.|++.|..++...-....... ......+.
T Consensus 366 -----~e----~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~-~~~k~kL~ 435 (971)
T KOG0385|consen 366 -----QE----LVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEG-KGEKTKLQ 435 (971)
T ss_pred -----HH----HHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccc-cchhhHHH
Confidence 11 234589999999999999999999999999999999999999999999875322222111 11245688
Q ss_pred HHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhccccc
Q 001149 692 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 771 (1138)
Q Consensus 692 ~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~ 771 (1138)
..++.||++||||+|+... +.+.+ + .....
T Consensus 436 NI~mQLRKccnHPYLF~g~-ePg~p--------------------------------------y-----------ttdeh 465 (971)
T KOG0385|consen 436 NIMMQLRKCCNHPYLFDGA-EPGPP--------------------------------------Y-----------TTDEH 465 (971)
T ss_pred HHHHHHHHhcCCccccCCC-CCCCC--------------------------------------C-----------CcchH
Confidence 8999999999999999642 11111 0 00112
Q ss_pred ccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHH
Q 001149 772 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 851 (1138)
Q Consensus 772 ~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~F 851 (1138)
.+..||||.+|.++|..+.+.|+|||||||++.+||+|++|+.. +|+.|+||||+|+.++|...|+.|
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~------------R~y~ycRiDGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCML------------RGYEYCRLDGSTSHEEREDAIEAF 533 (971)
T ss_pred HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHh------------cCceeEeecCCCCcHHHHHHHHhc
Confidence 35679999999999999999999999999999999999999975 799999999999999999999999
Q ss_pred cCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 001149 852 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 931 (1138)
Q Consensus 852 n~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K 931 (1138)
|.++ .+..|||+||+|||+||||++|++||+||.+|||..|.||++|+|||||+|+|.||||++++||||+|+.|...|
T Consensus 534 n~~~-s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 534 NAPP-SEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred CCCC-cceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 9874 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccc----cccccCCHHHHHHcccCCCCC
Q 001149 932 EGLAARVVDRQ----QVHRTISKEEMLHLFEFGDDE 963 (1138)
Q Consensus 932 ~~l~~~vvd~~----~~~r~~s~~el~~Lf~~~~~~ 963 (1138)
.+|.+-||..+ +.......+++..+..++.+.
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~ 648 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADP 648 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchh
Confidence 99999999887 333346689999999998653
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.6e-87 Score=799.98 Aligned_cols=521 Identities=32% Similarity=0.508 Sum_probs=437.5
Q ss_pred ccchhhccccCCccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 359 GYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 359 ~~i~~~~~~~~~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
+.+.....+..-+++.+|..|...||.||.+||.|+- .+++ .+-.|||||+||||||+|+|++++.-...
T Consensus 952 kFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLa-----FLnk-----y~LHGILcDDMGLGKTLQticilAsd~y~ 1021 (1549)
T KOG0392|consen 952 KFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLA-----FLNK-----YKLHGILCDDMGLGKTLQTICILASDHYK 1021 (1549)
T ss_pred HHHHHhcCcccCCccccccchhHHHHHHHHhccHHHH-----HHHH-----hcccceeeccccccHHHHHHHHHHHHHHh
Confidence 3444555566677899999999999999999999982 2333 45789999999999999999999865433
Q ss_pred c-----ccCCCceEEEeCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhccccc
Q 001149 439 V-----NLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFG 513 (1138)
Q Consensus 439 ~-----~~~~k~vLIV~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~ 513 (1138)
. .....|.|||||.+|..+|+.|+.+|+|. ++|..|.|.... |... +.-.++.+|+|++|+.+|+
T Consensus 1022 r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~pf----L~v~~yvg~p~~-r~~l-R~q~~~~~iiVtSYDv~Rn---- 1091 (1549)
T KOG0392|consen 1022 RRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFFPF----LKVLQYVGPPAE-RREL-RDQYKNANIIVTSYDVVRN---- 1091 (1549)
T ss_pred hcccchhhccCCeEEECCchhhhHHHHHHHHhcch----hhhhhhcCChHH-HHHH-HhhccccceEEeeHHHHHH----
Confidence 2 11246899999999999999999999997 777777765433 3333 2333677999999999986
Q ss_pred ccccchhhHHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCCh
Q 001149 514 KHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 593 (1138)
Q Consensus 514 ~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~ 593 (1138)
+...+.+..|.|+|+||||.|||..++.++++++|++.||++|||||+|||+.|||++++||+|+++|+.
T Consensus 1092 ----------D~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtE 1161 (1549)
T KOG0392|consen 1092 ----------DVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTE 1161 (1549)
T ss_pred ----------HHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcH
Confidence 3445566699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHh
Q 001149 594 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 673 (1138)
Q Consensus 594 ~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~ 673 (1138)
++|..+|.+||.......++..+.+..-.+...||+.+-||++||.+.+|.++||||..+..+|+|+|.|+++|+.|...
T Consensus 1162 KqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~ 1241 (1549)
T KOG0392|consen 1162 KQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK 1241 (1549)
T ss_pred HHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hcccc------cccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhh
Q 001149 674 HGFTN------DRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFL 747 (1138)
Q Consensus 674 ~~~~~------~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~ 747 (1138)
..... ...+.......+|++++.+|+.||||.+......... ...
T Consensus 1242 ~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l----------------------------a~i- 1292 (1549)
T KOG0392|consen 1242 AKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL----------------------------AAI- 1292 (1549)
T ss_pred hccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH----------------------------HHH-
Confidence 22111 0001111245789999999999999998753211000 000
Q ss_pred cCCCCCccchhhhhhhh-hhcccccccCCCchHHHHHHHHHHhhc--------------CCCeEEEEcCCcchHHHHHHH
Q 001149 748 QGKNDDGFFQKDWWNDL-LHEHTYKELDYSGKMVLLLDILTMCSN--------------MGDKSLVFSQSIPTLDLIEFY 812 (1138)
Q Consensus 748 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~S~Kl~~L~eiL~~~~~--------------~g~KvLVFSq~~~~ld~Le~~ 812 (1138)
...+ .......++.+|+|+.+|.++|.+|.- .++|+|||||+.+|+|+++.-
T Consensus 1293 -------------~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1293 -------------VSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred -------------HHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 0000 011123346789999999999998731 368999999999999999998
Q ss_pred HhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcch
Q 001149 813 LSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 892 (1138)
Q Consensus 813 L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~ 892 (1138)
|-+- ....+.|.|+||++++.+|++++++||+ ++.+.|+|++|.+||+|+|||+|++|||++.+|||..
T Consensus 1360 L~k~---------~mpsVtymRLDGSVpp~~R~kiV~~FN~--DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMr 1428 (1549)
T KOG0392|consen 1360 LFKK---------YMPSVTYMRLDGSVPPGDRQKIVERFNE--DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1428 (1549)
T ss_pred Hhhh---------hcCceeEEEecCCCCcHHHHHHHHHhcC--CCceeEEEEeeeccccccccCCCceEEEEecCCCchh
Confidence 8652 2346789999999999999999999999 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccccccc-ccCCHHHHHHccc-CCCC
Q 001149 893 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFE-FGDD 962 (1138)
Q Consensus 893 ~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~~~~-r~~s~~el~~Lf~-~~~~ 962 (1138)
|.||++|||||||+|.|.|||||++||+||||+..|.+|...++.||..++.. ..+..++|.+||+ .+.+
T Consensus 1429 DLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~~~gd 1500 (1549)
T KOG0392|consen 1429 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTVLDGD 1500 (1549)
T ss_pred hHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhcccCCc
Confidence 99999999999999999999999999999999999999999999999988765 6888999999999 5443
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-84 Score=750.19 Aligned_cols=511 Identities=33% Similarity=0.435 Sum_probs=393.5
Q ss_pred CCchhh--hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 375 IPSSIS--AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 375 vp~~l~--~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
.|+.+. .+|+|||+.||.||.=.+ ..+-.||||||||||||+|+|||++++.+.+. .+|.|||||+
T Consensus 390 qp~~l~s~i~LkdYQlvGvNWL~Lly----------k~~l~gILADEMGLGKTiQvIaFlayLkq~g~--~gpHLVVvPs 457 (941)
T KOG0389|consen 390 QPKLLSSGIQLKDYQLVGVNWLLLLY----------KKKLNGILADEMGLGKTIQVIAFLAYLKQIGN--PGPHLVVVPS 457 (941)
T ss_pred CccccCCCCcccchhhhhHHHHHHHH----------HccccceehhhccCcchhHHHHHHHHHHHcCC--CCCcEEEecc
Confidence 444443 459999999999996443 45678899999999999999999999998876 5699999999
Q ss_pred chHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHH---hhcCCEEEEccchhhcccccccccchhhHHHHhhhh
Q 001149 453 NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW---RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 529 (1138)
Q Consensus 453 sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~---~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l 529 (1138)
|++.||.+||.+|+|. ++|..|+|+. ..|.++.... ...++|++|||..+..- ..++.+ +-
T Consensus 458 STleNWlrEf~kwCPs----l~Ve~YyGSq-~ER~~lR~~i~~~~~~ydVllTTY~la~~~-----kdDRsf------lk 521 (941)
T KOG0389|consen 458 STLENWLREFAKWCPS----LKVEPYYGSQ-DERRELRERIKKNKDDYDVLLTTYNLAASS-----KDDRSF------LK 521 (941)
T ss_pred hhHHHHHHHHHHhCCc----eEEEeccCcH-HHHHHHHHHHhccCCCccEEEEEeecccCC-----hHHHHH------HH
Confidence 9999999999999998 9999999976 3343333322 23678999999987632 122222 22
Q ss_pred ccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCCh-HHHHhhccCCcccCC
Q 001149 530 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS-HEFRNRFQNPIENGQ 608 (1138)
Q Consensus 530 ~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~-~eF~~~f~~pi~~g~ 608 (1138)
...|++||.||||.+||..|.+++-+..+++..|++|||||+||||.||++|+.|+.|+.|.+. ..+...|..--.
T Consensus 522 ~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~--- 598 (941)
T KOG0389|consen 522 NQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT--- 598 (941)
T ss_pred hccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC---
Confidence 3489999999999999999999999999999999999999999999999999999999999755 556666643211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHh
Q 001149 609 HTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 688 (1138)
Q Consensus 609 ~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~ 688 (1138)
.++......+...|......+++||++||.+++|..+||||..++.+|.|+..|+.+|..+++................
T Consensus 599 -~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~ 677 (941)
T KOG0389|consen 599 -SDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELK 677 (941)
T ss_pred -ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccc
Confidence 1333444445556777788899999999999999999999999999999999999999999886532222111111111
Q ss_pred hHHHHHHHHHHHhcCccccccccccCCCCC---ccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhh
Q 001149 689 SFFAGYQALAQIWNHPGILQLTKDKGYPSR---EDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLL 765 (1138)
Q Consensus 689 ~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~---e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 765 (1138)
+ -..++.||+++|||.|+...-....... ....+..-.+ -......+....+.||-- ......+-
T Consensus 678 ~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~--~n~qyIfEDm~~msDfel---------HqLc~~f~ 745 (941)
T KOG0389|consen 678 S-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKK--ANEQYIFEDMEVMSDFEL---------HQLCCQFR 745 (941)
T ss_pred c-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhh--cCHHHHHHHHHhhhHHHH---------HHHHHhcC
Confidence 1 4578999999999998853211000000 0000000000 000000111111122110 00000000
Q ss_pred hccc----ccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCH
Q 001149 766 HEHT----YKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTES 841 (1138)
Q Consensus 766 ~~~~----~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~ 841 (1138)
.... -..+-.|||+..|..+|.++...|+||||||||+.|||+|+.+|.. .|+.|.|+||+|..
T Consensus 746 ~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~------------l~~~ylRLDGsTqV 813 (941)
T KOG0389|consen 746 HLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDT------------LGYKYLRLDGSTQV 813 (941)
T ss_pred CCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHh------------cCceEEeecCCccc
Confidence 0001 1223459999999999999999999999999999999999999997 58999999999999
Q ss_pred HHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 842 SERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 842 ~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
..|+.+|+.||. +..+.|||+||+|||.||||++||+||++|.++||..|.||.+|+||+||+|+|+|||||+++|||
T Consensus 814 ~~RQ~lId~Fn~--d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 814 NDRQDLIDEFNT--DKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hHHHHHHHhhcc--CCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999999999998 566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccccc
Q 001149 922 EKIYKRQVTKEGLAARVVDRQQ 943 (1138)
Q Consensus 922 ekI~~rq~~K~~l~~~vvd~~~ 943 (1138)
|.|+.....|..|-..+.+...
T Consensus 892 E~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 892 EGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred HHHHHHHHHhhhhhhhhccCcc
Confidence 9999999999999888876554
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.3e-82 Score=796.49 Aligned_cols=481 Identities=31% Similarity=0.460 Sum_probs=403.9
Q ss_pred cCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc
Q 001149 374 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 453 (1138)
Q Consensus 374 ~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s 453 (1138)
..|..+...|+|||++|++||+..+ ..+.||||||+||||||+|+|+++..+..... ..+|+|||||++
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~----------~~g~gGILADEMGLGKTlQaIalL~~L~~~~~-~~gp~LIVvP~S 229 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLY----------ENGINGILADEMGLGKTLQTISLLGYLHEYRG-ITGPHMVVAPKS 229 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHH----------hcCCCEEEEeCCCccHHHHHHHHHHHHHHhcC-CCCCEEEEeChH
Confidence 4688899999999999999998754 45789999999999999999999988765422 357999999999
Q ss_pred hHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHH--hhcCCEEEEccchhhcccccccccchhhHHHHhhhhcc
Q 001149 454 VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW--RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 531 (1138)
Q Consensus 454 ll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~--~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~ 531 (1138)
++.||.+||.+|+|. +.++.+++....+. .....+ ....+|+||+|+++.. ....+...
T Consensus 230 lL~nW~~Ei~kw~p~----l~v~~~~G~~~eR~-~~~~~~~~~~~~dVvITSYe~l~~--------------e~~~L~k~ 290 (1033)
T PLN03142 230 TLGNWMNEIRRFCPV----LRAVKFHGNPEERA-HQREELLVAGKFDVCVTSFEMAIK--------------EKTALKRF 290 (1033)
T ss_pred HHHHHHHHHHHHCCC----CceEEEeCCHHHHH-HHHHHHhcccCCCcceecHHHHHH--------------HHHHhccC
Confidence 999999999999986 78888887654332 222222 2357899999999753 12233445
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 611 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~ 611 (1138)
.|++|||||||+|||..|.++++++.+++.+||+|||||++|++.|||+|++||.|+.|++...|..+|..+...+
T Consensus 291 ~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~---- 366 (1033)
T PLN03142 291 SWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEND---- 366 (1033)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998732211
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 001149 612 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 691 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l 691 (1138)
. ......|+.+|++|++||++.++...|||+.+.+++|.||+.|+.+|+.++....... ........++
T Consensus 367 ----~----~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l---~~g~~~~~Ll 435 (1033)
T PLN03142 367 ----Q----QEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVV---NAGGERKRLL 435 (1033)
T ss_pred ----h----HHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH---hccccHHHHH
Confidence 1 1234568999999999999999999999999999999999999999999886432111 1112234578
Q ss_pred HHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhccccc
Q 001149 692 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 771 (1138)
Q Consensus 692 ~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~ 771 (1138)
..++.||++|+||.++...... . ... ....
T Consensus 436 nilmqLRk~cnHP~L~~~~ep~-~--------------------------------------~~~-----------~~e~ 465 (1033)
T PLN03142 436 NIAMQLRKCCNHPYLFQGAEPG-P--------------------------------------PYT-----------TGEH 465 (1033)
T ss_pred HHHHHHHHHhCCHHhhhccccc-C--------------------------------------ccc-----------chhH
Confidence 8899999999999987422100 0 000 0001
Q ss_pred ccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHH
Q 001149 772 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 851 (1138)
Q Consensus 772 ~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~F 851 (1138)
.+..|+|+.+|..+|..+...|+||||||||+.++++|+++|.. .|+.|++|||+++..+|+.+|++|
T Consensus 466 lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~------------~g~~y~rIdGsts~~eRq~~Id~F 533 (1033)
T PLN03142 466 LVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMY------------RGYQYCRIDGNTGGEDRDASIDAF 533 (1033)
T ss_pred HhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHH------------cCCcEEEECCCCCHHHHHHHHHHh
Confidence 23569999999999999999999999999999999999999986 689999999999999999999999
Q ss_pred cCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 001149 852 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 931 (1138)
Q Consensus 852 n~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K 931 (1138)
|++.+ ...|||+||+|||+||||+.||+||+||++|||+.+.||+||+|||||+++|+||||++.|||||+|++++..|
T Consensus 534 n~~~s-~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 534 NKPGS-EKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred ccccC-CceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 97643 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccc--cccCCHHHHHHcccCCCC
Q 001149 932 EGLAARVVDRQQV--HRTISKEEMLHLFEFGDD 962 (1138)
Q Consensus 932 ~~l~~~vvd~~~~--~r~~s~~el~~Lf~~~~~ 962 (1138)
..+...|++.+.. ...++.+||.+||.++.+
T Consensus 613 l~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~ 645 (1033)
T PLN03142 613 LALDALVIQQGRLAEQKTVNKDELLQMVRYGAE 645 (1033)
T ss_pred HHHHHHHHhcCcccccccCCHHHHHHHHHhChH
Confidence 9999999986533 257899999999998764
No 8
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.6e-84 Score=779.61 Aligned_cols=481 Identities=34% Similarity=0.501 Sum_probs=403.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
..||+||++|+.||..... .+.+||||||||||||+|+|+||.++...... .+|+|||||.+++.+|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~----------~~~n~ILADEmgLgktvqti~fl~~l~~~~~~-~gpflvvvplst~~~W~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWY----------KRNNCILADEMGLGKTVQTITFLSYLFHSLQI-HGPFLVVVPLSTITAWER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHH----------hcccceehhhcCCCcchHHHHHHHHHHHhhhc-cCCeEEEeehhhhHHHHH
Confidence 6899999999999987663 56899999999999999999999999887643 579999999999999999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhh-------cCCEEEEccchhhcccccccccchhhHHHHhhhhccCC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA-------KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP 533 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~-------~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~ 533 (1138)
||..|+ . +++++|+|....+.....-.|.. +.+++||||+++- ++.. .+-...|
T Consensus 438 ef~~w~-~----mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~L--------kDk~------~L~~i~w 498 (1373)
T KOG0384|consen 438 EFETWT-D----MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL--------KDKA------ELSKIPW 498 (1373)
T ss_pred HHHHHh-h----hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHh--------ccHh------hhccCCc
Confidence 999999 4 78888888654332222222321 3578999999863 2222 2334489
Q ss_pred CEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCC
Q 001149 534 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 613 (1138)
Q Consensus 534 dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~ 613 (1138)
.++++||||++||..+.++..+..++..+|+++||||+|||+.|||+|++||.|+-|.+..+|...|..- +
T Consensus 499 ~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~---------~ 569 (1373)
T KOG0384|consen 499 RYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE---------T 569 (1373)
T ss_pred ceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch---------h
Confidence 9999999999999999999999999999999999999999999999999999999999999998887221 1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHH
Q 001149 614 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 693 (1138)
Q Consensus 614 ~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~ 693 (1138)
. .-.+.|+..|+||++||.+.+|.+.||+|.|.++.|.||+.|++.|+.++...-..... ...+...+++..
T Consensus 570 e-------~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK-G~~g~~~~lLNi 641 (1373)
T KOG0384|consen 570 E-------EQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK-GAKGSTPSLLNI 641 (1373)
T ss_pred H-------HHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc-cCCCCCchHHHH
Confidence 1 12445999999999999999999999999999999999999999999999753211111 111222589999
Q ss_pred HHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhccccccc
Q 001149 694 YQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKEL 773 (1138)
Q Consensus 694 l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 773 (1138)
++.|+++||||+|+....+.... ++.. . . .....-..+
T Consensus 642 mmELkKccNHpyLi~gaee~~~~----------------------------~~~~-~-----~--------~d~~L~~lI 679 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILG----------------------------DFRD-K-----M--------RDEALQALI 679 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHH----------------------------hhhh-c-----c--------hHHHHHHHH
Confidence 99999999999998643321110 0000 0 0 011122345
Q ss_pred CCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 774 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 774 ~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
..||||.+|.++|..+.+.|+|||||||++.|||+|++||.. +|++|-||||++..+-|+.+|+.||.
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~------------r~ypfQRLDGsvrgelRq~AIDhFna 747 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSL------------RGYPFQRLDGSVRGELRQQAIDHFNA 747 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHH------------cCCcceeccCCcchHHHHHHHHhccC
Confidence 779999999999999999999999999999999999999996 79999999999999999999999999
Q ss_pred CCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHH
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEG 933 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~ 933 (1138)
+.+. -+|||+||+|||+||||+.|++|||||.+|||..|.||..|||||||++.|.|||||+.+|+|+-|++|+..|..
T Consensus 748 p~Sd-dFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Kmv 826 (1373)
T KOG0384|consen 748 PDSD-DFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMV 826 (1373)
T ss_pred CCCC-ceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhh
Confidence 8654 569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccccc------ccccCCHHHHHHcccCCCCC
Q 001149 934 LAARVVDRQQ------VHRTISKEEMLHLFEFGDDE 963 (1138)
Q Consensus 934 l~~~vvd~~~------~~r~~s~~el~~Lf~~~~~~ 963 (1138)
|-.+||.... ....|+.+||.+++.|+..+
T Consensus 827 LD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~ 862 (1373)
T KOG0384|consen 827 LDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYE 862 (1373)
T ss_pred hHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHH
Confidence 9999986543 34689999999999999754
No 9
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=9e-83 Score=763.36 Aligned_cols=515 Identities=35% Similarity=0.579 Sum_probs=419.9
Q ss_pred ccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccC---CCceE
Q 001149 371 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG---LRTAL 447 (1138)
Q Consensus 371 ~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~---~k~vL 447 (1138)
..+.+.|.+...|||||++|++|||+++...+.- ....|||+||+||+|||+|.|+||.++++..... ..+.|
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~----~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~l 302 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRP----KNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPL 302 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhccccc----CCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccE
Confidence 4578889999999999999999999998764321 2568999999999999999999999999886531 25789
Q ss_pred EEeCcchHHHHHHHHHHHCCC-CCCCeEEEEecCcchhHHHHHHHHHh------hcCCEEEEccchhhcccccccccchh
Q 001149 448 IVTPVNVLHNWKQEFMKWRPS-ELKPLRVFMLEDVSRDRRAELLAKWR------AKGGVFLIGYTAFRNLSFGKHVKDRN 520 (1138)
Q Consensus 448 IV~P~sll~qW~~E~~kw~p~-~~~~l~V~~~~~~~~~~r~~~l~~~~------~~~~VvIity~~~r~l~~~~~~~~~~ 520 (1138)
||||.+||.||.+||.+|... .. ....+.+.... .......|. -..-|.+++|++++
T Consensus 303 VV~P~sLv~nWkkEF~KWl~~~~i---~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~------------ 366 (776)
T KOG0390|consen 303 VVAPSSLVNNWKKEFGKWLGNHRI---NPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETAS------------ 366 (776)
T ss_pred EEccHHHHHHHHHHHHHhcccccc---ceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHH------------
Confidence 999999999999999999974 43 33444443332 111111121 12346778888775
Q ss_pred hHHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhc
Q 001149 521 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 600 (1138)
Q Consensus 521 ~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f 600 (1138)
.....++...+++|||||||++||..|.+++++.++++++|++|||||+||++.|||++++|++|++||+..+|++.|
T Consensus 367 --~~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~ 444 (776)
T KOG0390|consen 367 --DYCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKF 444 (776)
T ss_pred --HHHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHh
Confidence 234556677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccc
Q 001149 601 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR 680 (1138)
Q Consensus 601 ~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~ 680 (1138)
..|+..++..+.+..+... ..|...|..+...|++||+.+.+.+.||++.+++|+|.+|+.|..+|..+++.. ..
T Consensus 445 ~~~i~~~~~~~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~--- 519 (776)
T KOG0390|consen 445 EIPILRGRDADASEEDRER-EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM--- 519 (776)
T ss_pred hcccccccCCCcchhhhhh-HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh---
Confidence 9999999998888877766 567888999999999999999999999999999999999999999999998753 11
Q ss_pred cchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhh
Q 001149 681 VSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDW 760 (1138)
Q Consensus 681 ~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 760 (1138)
.......+..+..|.++|+||.|+........ + +........
T Consensus 520 ---~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~---e-------~~~~~~~~~------------------------- 561 (776)
T KOG0390|consen 520 ---RTLKGYALELITKLKKLCNHPSLLLLCEKTEK---E-------KAFKNPALL------------------------- 561 (776)
T ss_pred ---hhhhcchhhHHHHHHHHhcCHHhhcccccccc---c-------ccccChHhh-------------------------
Confidence 11122367888899999999999852211000 0 000000000
Q ss_pred hhhhhhcccccccCCCchHHHHHHHHHHhhcC-CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCC
Q 001149 761 WNDLLHEHTYKELDYSGKMVLLLDILTMCSNM-GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT 839 (1138)
Q Consensus 761 ~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~-g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGst 839 (1138)
...............|+|+..|+.+|..+.+. -.++++-++++.++++++.+++ |. |+.++++||+|
T Consensus 562 ~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~-----------~~-g~~~~rLdG~~ 629 (776)
T KOG0390|consen 562 LDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR-----------WR-GYEVLRLDGKT 629 (776)
T ss_pred hcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh-----------hc-CceEEEEcCCC
Confidence 00000011122334689999999998655433 4677777888889999999887 45 99999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 840 ESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 840 s~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
+..+|+.+|+.||++.++. +|||+|++|||+||||++|+|||+||++|||+.+.||++||||.||+|+||||||++.||
T Consensus 630 ~~~qRq~~vd~FN~p~~~~-~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPS-FVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred chHHHHHHHHhccCCCCCc-eEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 9999999999999987654 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccc-ccccCCHHHHHHcccCCCCC
Q 001149 920 MEEKIYKRQVTKEGLAARVVDRQQ-VHRTISKEEMLHLFEFGDDE 963 (1138)
Q Consensus 920 iEekI~~rq~~K~~l~~~vvd~~~-~~r~~s~~el~~Lf~~~~~~ 963 (1138)
+||+||+||..|+.|+..|++..+ ..+++..+++..+|.+..++
T Consensus 709 iEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~~~~~ 753 (776)
T KOG0390|consen 709 IEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFDLELDT 753 (776)
T ss_pred chHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHhhhccc
Confidence 999999999999999999999865 45788889999999887654
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-82 Score=747.92 Aligned_cols=542 Identities=30% Similarity=0.457 Sum_probs=424.4
Q ss_pred CCccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEE
Q 001149 369 GEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALI 448 (1138)
Q Consensus 369 ~~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLI 448 (1138)
....+.+|..|.+.||.||+.|+.||...+ .++.+||||||||||||+|+|+|++++.... ..++|.||
T Consensus 602 TqVktpvPsLLrGqLReYQkiGLdWLatLY----------eknlNGILADEmGLGKTIQtISllAhLACee-gnWGPHLI 670 (1958)
T KOG0391|consen 602 TQVKTPVPSLLRGQLREYQKIGLDWLATLY----------EKNLNGILADEMGLGKTIQTISLLAHLACEE-GNWGPHLI 670 (1958)
T ss_pred eeeccCchHHHHHHHHHHHHhhHHHHHHHH----------HhcccceehhhhcccchhHHHHHHHHHHhcc-cCCCCceE
Confidence 345678999999999999999999997654 4678999999999999999999999886653 45899999
Q ss_pred EeCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhh--cCCEEEEccchhhcccccccccchhhHHHHh
Q 001149 449 VTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA--KGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 526 (1138)
Q Consensus 449 V~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~--~~~VvIity~~~r~l~~~~~~~~~~~~~~~~ 526 (1138)
|||.+++.||.-||++|+|+ ++|..|.|..+. |....+.|.. ..+|.|++|..+- .++.
T Consensus 671 VVpTsviLnWEMElKRwcPg----lKILTYyGs~kE-rkeKRqgW~kPnaFHVCItSYklv~--------------qd~~ 731 (1958)
T KOG0391|consen 671 VVPTSVILNWEMELKRWCPG----LKILTYYGSHKE-RKEKRQGWAKPNAFHVCITSYKLVF--------------QDLT 731 (1958)
T ss_pred EeechhhhhhhHHHhhhCCc----ceEeeecCCHHH-HHHHhhcccCCCeeEEeehhhHHHH--------------hHHH
Confidence 99999999999999999998 899999986654 4455677865 3579999998763 2333
Q ss_pred hhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCccc
Q 001149 527 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIEN 606 (1138)
Q Consensus 527 ~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~ 606 (1138)
.+-...|.|+|+||||+|||..|+.++++..+++.+|++|||||+||+++|||+|+.||+|..|.+...|+.||.+|+..
T Consensus 732 AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltg 811 (1958)
T KOG0391|consen 732 AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTG 811 (1958)
T ss_pred HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchh
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHH
Q 001149 607 GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKI 686 (1138)
Q Consensus 607 g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~ 686 (1138)
--.. + .....+-...||+.|+||++||.+.+|.+.||.|.|++|+|+||..|+.||+.|+......... ..+.
T Consensus 812 miEg-s----qeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetL--kSGh 884 (1958)
T KOG0391|consen 812 MIEG-S----QEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETL--KSGH 884 (1958)
T ss_pred hccc-c----hhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHh--hcCc
Confidence 2211 1 1122344566999999999999999999999999999999999999999999998754432211 1222
Q ss_pred HhhHHHHHHHHHHHhcCccccccccc-c-------CCCCCcc-----c----cCC----CCc--cccccccc--------
Q 001149 687 RKSFFAGYQALAQIWNHPGILQLTKD-K-------GYPSRED-----A----EDS----SSD--ENMDYNVV-------- 735 (1138)
Q Consensus 687 ~~~~l~~l~~Lrki~~hP~ll~~~~~-~-------~~~~~e~-----~----~d~----~~d--~~~d~~~~-------- 735 (1138)
..+++..++.||++||||.|+.-.-- . .+....+ . .+. .+. .....+.+
T Consensus 885 fmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~s 964 (1958)
T KOG0391|consen 885 FMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLS 964 (1958)
T ss_pred hhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhc
Confidence 34688999999999999999853211 0 0000000 0 000 000 00000000
Q ss_pred ---------cCC-CCc-----------cchh--------------------------------------hhcCCC-----
Q 001149 736 ---------IGE-KPR-----------NMND--------------------------------------FLQGKN----- 751 (1138)
Q Consensus 736 ---------~~~-~~~-----------~~~d--------------------------------------~~~~~~----- 751 (1138)
... ..+ ..++ +.....
T Consensus 965 Aspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~ 1044 (1958)
T KOG0391|consen 965 ASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTL 1044 (1958)
T ss_pred ccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceee
Confidence 000 000 0000 000000
Q ss_pred -------------------------------------------------CC--ccc-----------h------------
Q 001149 752 -------------------------------------------------DD--GFF-----------Q------------ 757 (1138)
Q Consensus 752 -------------------------------------------------~~--~~~-----------~------------ 757 (1138)
++ .++ .
T Consensus 1045 ~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~ 1124 (1958)
T KOG0391|consen 1045 QHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIG 1124 (1958)
T ss_pred eeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccc
Confidence 00 000 0
Q ss_pred -------h----------------------------------hhh------------------hhhhhcccc--------
Q 001149 758 -------K----------------------------------DWW------------------NDLLHEHTY-------- 770 (1138)
Q Consensus 758 -------~----------------------------------~~~------------------~~l~~~~~~-------- 770 (1138)
+ .|- .++++...+
T Consensus 1125 ~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ 1204 (1958)
T KOG0391|consen 1125 GKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAA 1204 (1958)
T ss_pred cchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCC
Confidence 0 000 000000000
Q ss_pred --------------------------------c-----------------ccCCCchHHHHHHHHHHhhcCCCeEEEEcC
Q 001149 771 --------------------------------K-----------------ELDYSGKMVLLLDILTMCSNMGDKSLVFSQ 801 (1138)
Q Consensus 771 --------------------------------~-----------------~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq 801 (1138)
. .-..+||++.|.=+|+++...|++||||+|
T Consensus 1205 ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQ 1284 (1958)
T KOG0391|consen 1205 PPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQ 1284 (1958)
T ss_pred ChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhH
Confidence 0 001278999999999999999999999999
Q ss_pred CcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEE
Q 001149 802 SIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 881 (1138)
Q Consensus 802 ~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~V 881 (1138)
++.|||+|+.||.. +|+-|+||||+|+.++|+.++++||. +.+|+|||+||+.||+||||++|++|
T Consensus 1285 MtkmLDVLeqFLny------------HgylY~RLDg~t~vEqRQaLmerFNa--D~RIfcfILSTrSggvGiNLtgADTV 1350 (1958)
T KOG0391|consen 1285 MTKMLDVLEQFLNY------------HGYLYVRLDGNTSVEQRQALMERFNA--DRRIFCFILSTRSGGVGINLTGADTV 1350 (1958)
T ss_pred HHHHHHHHHHHHhh------------cceEEEEecCCccHHHHHHHHHHhcC--CCceEEEEEeccCCccccccccCceE
Confidence 99999999999997 79999999999999999999999998 68899999999999999999999999
Q ss_pred EEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccccccc-ccCCHHHHHHcccCC
Q 001149 882 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFG 960 (1138)
Q Consensus 882 Ii~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~~~~-r~~s~~el~~Lf~~~ 960 (1138)
||||.+|||+.|.||.+|+|||||+|+|+|||||.+.|||++|+.+...|+.|-+-++++++.. .+|+..++.+||...
T Consensus 1351 vFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~ 1430 (1958)
T KOG0391|consen 1351 VFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVY 1430 (1958)
T ss_pred EEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999998876 688999999999885
Q ss_pred C
Q 001149 961 D 961 (1138)
Q Consensus 961 ~ 961 (1138)
.
T Consensus 1431 ~ 1431 (1958)
T KOG0391|consen 1431 L 1431 (1958)
T ss_pred C
Confidence 4
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-80 Score=705.18 Aligned_cols=512 Identities=31% Similarity=0.463 Sum_probs=406.6
Q ss_pred CccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEE
Q 001149 370 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 449 (1138)
Q Consensus 370 ~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV 449 (1138)
...++.|.-+..+|+.||+.|+.||...+ +.|-+|||||+||||||+|+|++++++....+. .+|+|||
T Consensus 555 t~tV~qPkil~ctLKEYQlkGLnWLvnlY----------dqGiNGILADeMGLGKTVQsisvlAhLaE~~nI-wGPFLVV 623 (1185)
T KOG0388|consen 555 TRTVPQPKILKCTLKEYQLKGLNWLVNLY----------DQGINGILADEMGLGKTVQSISVLAHLAETHNI-WGPFLVV 623 (1185)
T ss_pred eeeccCchhhhhhhHHHhhccHHHHHHHH----------HccccceehhhhccchhHHHHHHHHHHHHhccC-CCceEEe
Confidence 44678899999999999999999998765 578899999999999999999999999877654 6899999
Q ss_pred eCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHH--------hhcCCEEEEccchhhcccccccccchhh
Q 001149 450 TPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW--------RAKGGVFLIGYTAFRNLSFGKHVKDRNM 521 (1138)
Q Consensus 450 ~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~--------~~~~~VvIity~~~r~l~~~~~~~~~~~ 521 (1138)
+|++++.||.+||.+|+|. +++.-|.|.... |..+.+.| ....+|+||+|.++.. +.++
T Consensus 624 tpaStL~NWaqEisrFlP~----~k~lpywGs~~e-RkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--------Deky 690 (1185)
T KOG0388|consen 624 TPASTLHNWAQEISRFLPS----FKVLPYWGSPSE-RKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--------DEKY 690 (1185)
T ss_pred ehHHHHhHHHHHHHHhCcc----ceeecCcCChhh-hHHHHHhcchhhhhccCCCceEEEEeeeeeec--------hHHH
Confidence 9999999999999999998 889888886543 33333333 2356899999998643 3333
Q ss_pred HHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhcc
Q 001149 522 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQ 601 (1138)
Q Consensus 522 ~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~ 601 (1138)
.. ...|.++|+|||+.||...|.+++.+..++++.|++||||||||++.|||+|++|++|.+|.+..+|..||.
T Consensus 691 ~q------kvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFS 764 (1185)
T KOG0388|consen 691 LQ------KVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFS 764 (1185)
T ss_pred HH------hhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHh
Confidence 33 338999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhccccccc
Q 001149 602 NPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRV 681 (1138)
Q Consensus 602 ~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~ 681 (1138)
.-|+.....+.+..+. ....||.+|+|||+||.+++|..+|..|++..|+|.||..|..+|+.+-....
T Consensus 765 KdIEshAe~~~tlneq-----qL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS------ 833 (1185)
T KOG0388|consen 765 KDIESHAEMNTTLNEQ-----QLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS------ 833 (1185)
T ss_pred hhhHhHHHhcCCcCHH-----HHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh------
Confidence 9988776666555443 34568999999999999999999999999999999999999999998855432
Q ss_pred chHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCC----c-ccccc------------------------
Q 001149 682 SNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSS----D-ENMDY------------------------ 732 (1138)
Q Consensus 682 ~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~----d-~~~d~------------------------ 732 (1138)
....+..++.||++||||+|+...+.......+..+.-++ . .-+++
T Consensus 834 -----~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~ 908 (1185)
T KOG0388|consen 834 -----SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIER 908 (1185)
T ss_pred -----HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHH
Confidence 1223458899999999999997654432222111000000 0 00000
Q ss_pred -----ccccCCCCccchhhhc-CCCCCcc---------------------chhhhhhhhhhc------------------
Q 001149 733 -----NVVIGEKPRNMNDFLQ-GKNDDGF---------------------FQKDWWNDLLHE------------------ 767 (1138)
Q Consensus 733 -----~~~~~~~~~~~~d~~~-~~~~~~~---------------------~~~~~~~~l~~~------------------ 767 (1138)
..+.|+.......-+. .....+. ........++..
T Consensus 909 ~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~a 988 (1185)
T KOG0388|consen 909 INGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAA 988 (1185)
T ss_pred HhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCC
Confidence 0011111110000000 0000000 000000000000
Q ss_pred ------------------------------ccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCC
Q 001149 768 ------------------------------HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLP 817 (1138)
Q Consensus 768 ------------------------------~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~ 817 (1138)
..-..+..|||+..|.++|..+...|++||+|.|.+.|+++|++||..
T Consensus 989 pPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~y-- 1066 (1185)
T KOG0388|consen 989 PPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVY-- 1066 (1185)
T ss_pred CCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHh--
Confidence 000113469999999999999999999999999999999999999997
Q ss_pred CCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHH
Q 001149 818 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 897 (1138)
Q Consensus 818 ~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAi 897 (1138)
+|+.|+|+||+.+...|.++|..|+. +.++|||+||+|||+|||||+|++|||||.+|||+.+.||+
T Consensus 1067 ----------r~Y~ylRLDGSsk~~dRrd~vrDwQ~---sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAM 1133 (1185)
T KOG0388|consen 1067 ----------RGYTYLRLDGSSKASDRRDVVRDWQA---SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAM 1133 (1185)
T ss_pred ----------hccceEEecCcchhhHHHHHHhhccC---CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHH
Confidence 79999999999999999999999997 56899999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcccc
Q 001149 898 YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 942 (1138)
Q Consensus 898 gR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~ 942 (1138)
+|+||+||++.|.||||+++||+||+|.+|...|.....-|+.+.
T Consensus 1134 DRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1134 DRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred HHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999988888764
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-79 Score=726.43 Aligned_cols=496 Identities=32% Similarity=0.487 Sum_probs=422.9
Q ss_pred hhccccCCccccCCchh-hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc
Q 001149 363 NVVREKGEEAVRIPSSI-SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL 441 (1138)
Q Consensus 363 ~~~~~~~~~~~~vp~~l-~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~ 441 (1138)
..++...+.....|..+ .++|++||+.|++||...+ +.+.+||||||||||||+|+|++|.+++...+.
T Consensus 374 s~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLy----------NNnLNGILADEMGLGKTIQtIsLitYLmE~K~~ 443 (1157)
T KOG0386|consen 374 STAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLY----------NNNLNGILADEMGLGKTIQTISLITYLMEHKQM 443 (1157)
T ss_pred HhcchhhhccccCcchhcCCCCchhhhhhhHHHhhcc----------CCCcccccchhcccchHHHHHHHHHHHHHHccc
Confidence 33455555666677666 5789999999999997643 677899999999999999999999999988654
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhh
Q 001149 442 GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNM 521 (1138)
Q Consensus 442 ~~k~vLIV~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~ 521 (1138)
.+|.|||||.+++.||..||.+|.|. +..+.|.|....++...-.....+.+|++|+|+.+- +++.+
T Consensus 444 -~GP~LvivPlstL~NW~~Ef~kWaPS----v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyii--------kdk~l 510 (1157)
T KOG0386|consen 444 -QGPFLIIVPLSTLVNWSSEFPKWAPS----VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYII--------KDKAL 510 (1157)
T ss_pred -CCCeEEeccccccCCchhhccccccc----eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhc--------CCHHH
Confidence 58999999999999999999999997 788888887665555444444577899999999753 23332
Q ss_pred HHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHH-hcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhc
Q 001149 522 AREICHALQDGPDILVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 600 (1138)
Q Consensus 522 ~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~-~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f 600 (1138)
. -...|.++||||+|+|||..++++..+. ...+++|++|||||+||++.|+|++++|+-|++|.+...|..||
T Consensus 511 L------sKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWF 584 (1157)
T KOG0386|consen 511 L------SKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWF 584 (1157)
T ss_pred H------hccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHh
Confidence 2 2349999999999999999999999998 67999999999999999999999999999999999999999999
Q ss_pred cCCcccCCC-CCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhccccc
Q 001149 601 QNPIENGQH-TNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTND 679 (1138)
Q Consensus 601 ~~pi~~g~~-~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~ 679 (1138)
..|+.+.+. ...+..+.-+.. +.||++|+||++||.+++|...||.|+++++.|.||..|+.+|..+.+......+
T Consensus 585 N~PFantGek~eLteEEtlLII---rRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d 661 (1157)
T KOG0386|consen 585 NQPFANTGEKVELTEEETLLII---RRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKD 661 (1157)
T ss_pred hhhhhhcCCcccccchHHHHHH---HHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcC
Confidence 999988664 445555555543 3488999999999999999999999999999999999999999998875444333
Q ss_pred ccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhh
Q 001149 680 RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKD 759 (1138)
Q Consensus 680 ~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 759 (1138)
.....+..+.++...+.||++||||+++.........
T Consensus 662 ~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~------------------------------------------- 698 (1157)
T KOG0386|consen 662 TAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTL------------------------------------------- 698 (1157)
T ss_pred chhccccchhhhhHhHHHHHhcCCchhhhhhcccccc-------------------------------------------
Confidence 3334455678899999999999999988533211000
Q ss_pred hhhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCC
Q 001149 760 WWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT 839 (1138)
Q Consensus 760 ~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGst 839 (1138)
++. ....+..|||+.+|..||.++...|++||.|+|.+..++++++||.. .++.|.|+||+|
T Consensus 699 ~~~------~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~------------~~~kYlRLDG~T 760 (1157)
T KOG0386|consen 699 HYD------IKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQI------------REYKYLRLDGQT 760 (1157)
T ss_pred ccC------hhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhh------------hhhheeeecCCc
Confidence 000 01234569999999999999999999999999999999999999995 689999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 840 ESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 840 s~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
+.++|..+++.||.| +..+++||+||+|||+|+||+.|++|||||++|||..+.||.+|+|||||+++|.|+||++.++
T Consensus 761 K~~eRg~ll~~FN~P-ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 761 KVEERGDLLEIFNAP-DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred chhhHHHHHHHhcCC-CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 999999999999997 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcccccccccCCHHH
Q 001149 920 MEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 952 (1138)
Q Consensus 920 iEekI~~rq~~K~~l~~~vvd~~~~~r~~s~~e 952 (1138)
+||+|+.++..|..+..+|+..+.....-+.+|
T Consensus 840 veE~il~~a~~Kl~~d~kviqag~fdn~st~~e 872 (1157)
T KOG0386|consen 840 VEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEE 872 (1157)
T ss_pred HHHHHHHHHHHhcCchHhhhhcccccCCCcHHH
Confidence 999999999999999999998877766555554
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-72 Score=644.17 Aligned_cols=533 Identities=24% Similarity=0.376 Sum_probs=407.2
Q ss_pred ccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc------cCCC
Q 001149 371 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN------LGLR 444 (1138)
Q Consensus 371 ~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~------~~~k 444 (1138)
...+-|.++...|.|||+.|+.||... ....+.||||||+||||||+++|++|..-..... ....
T Consensus 314 ~lte~P~g~~v~LmpHQkaal~Wl~wR---------E~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~ 384 (901)
T KOG4439|consen 314 DLTETPDGLKVELMPHQKAALRWLLWR---------ESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS 384 (901)
T ss_pred cccCCCCcceeecchhhhhhhhhhccc---------ccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC
Confidence 345678999999999999999999764 2368899999999999999999999977543211 1123
Q ss_pred ceEEEeCcchHHHHHHHHHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHH
Q 001149 445 TALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAR 523 (1138)
Q Consensus 445 ~vLIV~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~ 523 (1138)
++|||||++++.||.+|+.+-+... .+.||+|||..+ .-... ....++||||||..+.+....+.-. ..
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n--~LsV~~~HG~n~r~i~~~----~L~~YDvViTTY~lva~~~~~e~~~----~~ 454 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQN--ALSVYLYHGPNKREISAK----ELRKYDVVITTYNLVANKPDDELEE----GK 454 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhc--ceEEEEecCCccccCCHH----HHhhcceEEEeeeccccCCchhhhc----cc
Confidence 6999999999999999999887653 599999999874 33333 3356799999999887622111100 01
Q ss_pred HHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCC
Q 001149 524 EICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNP 603 (1138)
Q Consensus 524 ~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~p 603 (1138)
....++...|.+||+||||.|||++++.+.|++.|.+..||+|||||||||+.|+|+|+.||+..+|++...|+....++
T Consensus 455 ~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~ 534 (901)
T KOG4439|consen 455 NSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNM 534 (901)
T ss_pred CccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCc
Confidence 11234455899999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh-----cCCCCeEEEEEecCCHHHHHHHHHHHHhhcccc
Q 001149 604 IENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-----DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTN 678 (1138)
Q Consensus 604 i~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~-----~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~ 678 (1138)
-..|. .| |.=+.+++++||++..+.. .||++...++.++|+..+...|+-+++......
T Consensus 535 s~~g~-------------~r---lnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~ 598 (901)
T KOG4439|consen 535 SKGGA-------------NR---LNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLF 598 (901)
T ss_pred cccch-------------hh---hhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHH
Confidence 33321 22 3444778899999998877 799999999999999999999976654211000
Q ss_pred --------------c--------------------------ccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCC
Q 001149 679 --------------D--------------------------RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSR 718 (1138)
Q Consensus 679 --------------~--------------------------~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~ 718 (1138)
. ..++......++..+.+|||+|+||.++....+......
T Consensus 599 kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~ 678 (901)
T KOG4439|consen 599 KQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQM 678 (901)
T ss_pred HHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhh
Confidence 0 000111223468889999999999987754433211111
Q ss_pred ccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHh-hcCCCeEE
Q 001149 719 EDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC-SNMGDKSL 797 (1138)
Q Consensus 719 e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~-~~~g~KvL 797 (1138)
...++++++ ..+.......... +......++.. -....+....|.....|.|+..++++++.+ ....+|++
T Consensus 679 ~g~~~sde~-~~e~~~l~el~k~---~~T~~~~D~~e----d~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~v 750 (901)
T KOG4439|consen 679 NGGDDSDEE-QLEEDNLAELEKN---DETDCSDDNCE----DLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVV 750 (901)
T ss_pred cCcchhhhh-hhhhhHHHhhhhc---ccccccccccc----cccccchhhhcccccchhHHHHHHHHHHHHhhcccceee
Confidence 111111111 0000000000000 00000000000 001112333466677899999999999988 66789999
Q ss_pred EEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCccc
Q 001149 798 VFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS 877 (1138)
Q Consensus 798 VFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~ 877 (1138)
|-||++.+|++++..|.. .|..|..++|....++|+.+++.||.. ++..+|+|+|..|||+||||++
T Consensus 751 iVSQwtsvLniv~~hi~~------------~g~~y~si~Gqv~vK~Rq~iv~~FN~~-k~~~rVmLlSLtAGGVGLNL~G 817 (901)
T KOG4439|consen 751 IVSQWTSVLNIVRKHIQK------------GGHIYTSITGQVLVKDRQEIVDEFNQE-KGGARVMLLSLTAGGVGLNLIG 817 (901)
T ss_pred ehhHHHHHHHHHHHHHhh------------CCeeeeeecCccchhHHHHHHHHHHhc-cCCceEEEEEEccCcceeeecc
Confidence 999999999999999997 689999999999999999999999985 4558899999999999999999
Q ss_pred CCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcccccc--cccCCHHHHHH
Q 001149 878 ANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HRTISKEEMLH 955 (1138)
Q Consensus 878 An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~~~--~r~~s~~el~~ 955 (1138)
|||+|++|.+|||+.+.||-+|+||+||+|+|+||||++.||+|++|...|..|..++..|+.+... .+.+|..+|..
T Consensus 818 aNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~ 897 (901)
T KOG4439|consen 818 ANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKK 897 (901)
T ss_pred cceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997654 68999999999
Q ss_pred cccC
Q 001149 956 LFEF 959 (1138)
Q Consensus 956 Lf~~ 959 (1138)
||++
T Consensus 898 LFgl 901 (901)
T KOG4439|consen 898 LFGL 901 (901)
T ss_pred HhCC
Confidence 9975
No 14
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=8.5e-72 Score=615.52 Aligned_cols=543 Identities=24% Similarity=0.349 Sum_probs=401.5
Q ss_pred ccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 371 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 371 ~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
+....|.++.-.|.|||++|+.|+..+.. +...|||||||||+|||+|+||++..- ....|+||||
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~---------Ss~~GGiLADEMGMGKTIQtIaLllae-----~~ra~tLVva 238 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEE---------SSVAGGILADEMGMGKTIQTIALLLAE-----VDRAPTLVVA 238 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhh---------hhhccceehhhhccchHHHHHHHHHhc-----cccCCeeEEc
Confidence 34577899999999999999999976543 345899999999999999999998762 2356899999
Q ss_pred CcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccc--cccchh-hHHHHhh
Q 001149 451 PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGK--HVKDRN-MAREICH 527 (1138)
Q Consensus 451 P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~--~~~~~~-~~~~~~~ 527 (1138)
|.-.+.||.+||.+++.+ .++++.|+|.++....+.+ .++++++|||..+.+..... ..+.+. ...+..-
T Consensus 239 P~VAlmQW~nEI~~~T~g---slkv~~YhG~~R~~nikel----~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~Sl 311 (791)
T KOG1002|consen 239 PTVALMQWKNEIERHTSG---SLKVYIYHGAKRDKNIKEL----MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSL 311 (791)
T ss_pred cHHHHHHHHHHHHHhccC---ceEEEEEecccccCCHHHh----hcCcEEEEecHHHHHHHHhccccccccCCcccccch
Confidence 999999999999999985 5899999998877655544 45789999999876532110 111111 1111112
Q ss_pred hhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCCh-----------H--
Q 001149 528 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS-----------H-- 594 (1138)
Q Consensus 528 ~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~-----------~-- 594 (1138)
+-...|..||+||||.||+..|.+++|+..|.+.+||+|||||+||.+.|+|++++||+.++|..+ .
T Consensus 312 LHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~f 391 (791)
T KOG1002|consen 312 LHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKF 391 (791)
T ss_pred hhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceee
Confidence 223489999999999999999999999999999999999999999999999999999988765321 0
Q ss_pred ------------------HHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh--cCCCCeEEE
Q 001149 595 ------------------EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK--DLPPKTVFV 654 (1138)
Q Consensus 595 ------------------eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~--~LP~k~e~v 654 (1138)
-|......||...+..... +......+.+|+.+|+||++-.-.. .|||....+
T Consensus 392 tdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpG-------k~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~v 464 (791)
T KOG1002|consen 392 TDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPG-------KEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTV 464 (791)
T ss_pred cccccCCcccchhhhhhhhhcccccccchhhcccCch-------HHHHHHHHHHHHHHHHHHhhcccccccCCCccceee
Confidence 0222223444433322211 1222346778899999999865444 499999999
Q ss_pred EEecCCHHHHHHHHHHHHhhcccccccch----HHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccc-------cC
Q 001149 655 ITVKLSPLQRRLYKRFLDLHGFTNDRVSN----EKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDA-------ED 723 (1138)
Q Consensus 655 v~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~----~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~-------~d 723 (1138)
..--++.++..+|+.+...........-. -....++|..+.++||+..||+|+........+..... .|
T Consensus 465 RrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d 544 (791)
T KOG1002|consen 465 RRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHD 544 (791)
T ss_pred ehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCC
Confidence 98899999999998876532221111111 12345789999999999999999875433222211110 00
Q ss_pred CCCccccccc------------------------cccCCCCccchhhhcCCCCCccchhhh-hhhhhhcccccccCCCch
Q 001149 724 SSSDENMDYN------------------------VVIGEKPRNMNDFLQGKNDDGFFQKDW-WNDLLHEHTYKELDYSGK 778 (1138)
Q Consensus 724 ~~~d~~~d~~------------------------~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~S~K 778 (1138)
...|. +... .......-++ | +.........-+.+ ...++.......+..|.|
T Consensus 545 ~aed~-i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi-D-lse~alek~~l~~Fk~sSIlnRinm~~~qsSTK 621 (791)
T KOG1002|consen 545 PAEDY-IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI-D-LSEPALEKTDLKGFKASSILNRINMDDWQSSTK 621 (791)
T ss_pred hhhhh-HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc-c-ccchhhhhcchhhhhhHHHhhhcchhhhcchhH
Confidence 00000 0000 0000000000 0 00000000000111 112333334556788999
Q ss_pred HHHHHHHHHHhhcCC--CeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 779 MVLLLDILTMCSNMG--DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 779 l~~L~eiL~~~~~~g--~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
+++|.+-|..+.+.. -|.||||||+++||+|+..|.+ .|+..+.+.|+|++..|...|+.|.+ +
T Consensus 622 IEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k------------aGfscVkL~GsMs~~ardatik~F~n--d 687 (791)
T KOG1002|consen 622 IEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK------------AGFSCVKLVGSMSPAARDATIKYFKN--D 687 (791)
T ss_pred HHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc------------cCceEEEeccCCChHHHHHHHHHhcc--C
Confidence 999999988776653 4999999999999999999986 79999999999999999999999998 5
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 936 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~ 936 (1138)
..++|||+|.+|||+.|||+.|++|+++||||||+.+-||.+|+|||||.|||.|.||+.++|||++|.+.|..|..++.
T Consensus 688 ~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mih 767 (791)
T KOG1002|consen 688 IDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIH 767 (791)
T ss_pred CCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccccc-cccCCHHHHHHccc
Q 001149 937 RVVDRQQV-HRTISKEEMLHLFE 958 (1138)
Q Consensus 937 ~vvd~~~~-~r~~s~~el~~Lf~ 958 (1138)
+.++..+. ...++.+||+-||+
T Consensus 768 aTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 768 ATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred hhcCCcHHHHHhcCHHHHHHHhc
Confidence 99987653 36899999999985
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-62 Score=632.12 Aligned_cols=504 Identities=35% Similarity=0.517 Sum_probs=406.8
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH
Q 001149 377 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 456 (1138)
Q Consensus 377 ~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~ 456 (1138)
..+...|+|||.+|+.||++.+. ..+.||||||+||||||+|+|+++...+.......+++|||||.+++.
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~---------~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~ 403 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLR---------SNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLS 403 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH---------hccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHH
Confidence 67789999999999999974221 467899999999999999999999886555444357999999999999
Q ss_pred HHHHHHHHHCCCCCCCeE-EEEecCcch--hHHHHHHHHHhhc-----CCEEEEccchhhcccccccccchhhHHHHhhh
Q 001149 457 NWKQEFMKWRPSELKPLR-VFMLEDVSR--DRRAELLAKWRAK-----GGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 528 (1138)
Q Consensus 457 qW~~E~~kw~p~~~~~l~-V~~~~~~~~--~~r~~~l~~~~~~-----~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~ 528 (1138)
||.+|+.+|.|. ++ +..+++... ..+...+..+... .+++++||+.++... .....+
T Consensus 404 nw~~e~~k~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-----------~~~~~l 468 (866)
T COG0553 404 NWKREFEKFAPD----LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-----------VDHGGL 468 (866)
T ss_pred HHHHHHhhhCcc----ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------hhHHHH
Confidence 999999999997 55 777777653 2223334444332 689999999987421 122234
Q ss_pred hccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhh-hhccCCCC-ChHHHHhhccCCccc
Q 001149 529 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD-FVREGFLG-SSHEFRNRFQNPIEN 606 (1138)
Q Consensus 529 l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~-fL~p~~lg-~~~eF~~~f~~pi~~ 606 (1138)
....|+++|+||||+|||..|..+++++.+++.+|++|||||++|++.|||++++ |+.|++++ +...|..+|..|+..
T Consensus 469 ~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~ 548 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQA 548 (866)
T ss_pred hhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhh
Confidence 4459999999999999999999999999999999999999999999999999999 99999999 569999999999988
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhh--hhhcCCCCeEEEEEecCCHHHHHHHHHHHHhh---ccccccc
Q 001149 607 GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV--VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH---GFTNDRV 681 (1138)
Q Consensus 607 g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~--v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~---~~~~~~~ 681 (1138)
...... ........+.|+..+++|+.||.+.+ +..+||++.+.++++.+++.|..+|..++... .......
T Consensus 549 ~~~~~~----~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~ 624 (866)
T COG0553 549 EEDIGP----LEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL 624 (866)
T ss_pred cccccc----hhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776554 12222334448899999999999999 88899999999999999999999999988722 1111110
Q ss_pred chHH--------HHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCC
Q 001149 682 SNEK--------IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDD 753 (1138)
Q Consensus 682 ~~~~--------~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~ 753 (1138)
.... ...+++..+..|+++|+||.++......... ...... .. +
T Consensus 625 ~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~--~~~~~~------------~~-------------~- 676 (866)
T COG0553 625 EKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFD--RIVLLL------------RE-------------D- 676 (866)
T ss_pred HhhccccccccchhhHHHHHHHHHHHhccCccccccccccccc--hhhhhh------------hc-------------c-
Confidence 0010 1457889999999999999987543100000 000000 00 0
Q ss_pred ccchhhhhhhhhhcccccccCCC-chHHHHHHHH-HHhhcCCC--eEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCC
Q 001149 754 GFFQKDWWNDLLHEHTYKELDYS-GKMVLLLDIL-TMCSNMGD--KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKG 829 (1138)
Q Consensus 754 ~~~~~~~~~~l~~~~~~~~~~~S-~Kl~~L~eiL-~~~~~~g~--KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~G 829 (1138)
..........+..| +|+..+.++| ......|+ |+|||+||+.++++|+.+|.. .+
T Consensus 677 ---------~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~------------~~ 735 (866)
T COG0553 677 ---------KDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKA------------LG 735 (866)
T ss_pred ---------cccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHh------------cC
Confidence 00000011123456 8999999999 78888898 999999999999999999997 45
Q ss_pred ceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 830 KDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 830 i~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
+.|+++||+++...|+.++++|+++ ....|||+|++|||.||||++|++||+||++|||+.+.||++|+||+||+++|
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~--~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNAD--EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcC--CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 8899999999999999999999985 45678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHHccc--ccccccCCHHHHHHcccC
Q 001149 910 FAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR--QQVHRTISKEEMLHLFEF 959 (1138)
Q Consensus 910 ~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~--~~~~r~~s~~el~~Lf~~ 959 (1138)
.||||+++||+||+|+.+|..|+.+...+++. ......++.+++..+|..
T Consensus 814 ~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (866)
T COG0553 814 KVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFSL 865 (866)
T ss_pred EEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhcc
Confidence 99999999999999999999999999999995 455678899999999864
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=9.8e-56 Score=490.06 Aligned_cols=428 Identities=25% Similarity=0.322 Sum_probs=331.6
Q ss_pred CCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch
Q 001149 375 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV 454 (1138)
Q Consensus 375 vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl 454 (1138)
.|+.+...|.|||++||.|.++ .|+.++||||||||||+|||+++..+... .|.|||||+++
T Consensus 191 ~d~kLvs~LlPFQreGv~faL~-------------RgGR~llADeMGLGKTiQAlaIA~yyraE-----wplliVcPAsv 252 (689)
T KOG1000|consen 191 MDPKLVSRLLPFQREGVIFALE-------------RGGRILLADEMGLGKTIQALAIARYYRAE-----WPLLIVCPASV 252 (689)
T ss_pred cCHHHHHhhCchhhhhHHHHHh-------------cCCeEEEecccccchHHHHHHHHHHHhhc-----CcEEEEecHHH
Confidence 3889999999999999999974 67899999999999999999988877543 59999999999
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhc-cCC
Q 001149 455 LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ-DGP 533 (1138)
Q Consensus 455 l~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~-~~~ 533 (1138)
...|.+++.+|+|.... +.|. .+.... ....-..+.|.|++|+++..+ ...+. ..|
T Consensus 253 rftWa~al~r~lps~~p-i~vv--~~~~D~-----~~~~~t~~~v~ivSye~ls~l---------------~~~l~~~~~ 309 (689)
T KOG1000|consen 253 RFTWAKALNRFLPSIHP-IFVV--DKSSDP-----LPDVCTSNTVAIVSYEQLSLL---------------HDILKKEKY 309 (689)
T ss_pred hHHHHHHHHHhcccccc-eEEE--ecccCC-----ccccccCCeEEEEEHHHHHHH---------------HHHHhcccc
Confidence 99999999999998533 3333 222110 111112356899999997642 22333 369
Q ss_pred CEEEEcCCcccCCcccHHHHHHHhc--ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 001149 534 DILVCDEAHMIKNTRADTTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 611 (1138)
Q Consensus 534 dlVIlDEaH~iKN~~S~~skal~~l--~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~ 611 (1138)
.+||+||+|++|+..+++.+++.-+ .++|.|+|||||-...+.|||.++..+++.+|....+|..+|++--..+...+
T Consensus 310 ~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D 389 (689)
T KOG1000|consen 310 RVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD 389 (689)
T ss_pred eEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee
Confidence 9999999999999999999999887 78999999999999999999999999999999999999999997544433332
Q ss_pred CChHHHHHHHHHHHHHHHHHhH-HHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 001149 612 STSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 690 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~-~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~ 690 (1138)
.... .++..|+-+|.. .|+||.+.+|..+||||...++. ...+.+.+..+.++....... ..+...+
T Consensus 390 ykg~------tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~~t---~~~~~e~-- 457 (689)
T KOG1000|consen 390 YKGC------TNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVY-VSGGRIDARMDDLVKAAADYT---KVNSMER-- 457 (689)
T ss_pred cCCC------CCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEE-EcCCccchHHHHHHHHhhhcc---hhhhhhh--
Confidence 2110 123334444543 58899999999999999555544 444444444444443321100 0000000
Q ss_pred HHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccc
Q 001149 691 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 770 (1138)
Q Consensus 691 l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 770 (1138)
+|-.++...
T Consensus 458 -----------~~~~l~l~y------------------------------------------------------------ 466 (689)
T KOG1000|consen 458 -----------KHESLLLFY------------------------------------------------------------ 466 (689)
T ss_pred -----------hhHHHHHHH------------------------------------------------------------
Confidence 000000000
Q ss_pred cccCCCchHHHHHHHHHH----hhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHH
Q 001149 771 KELDYSGKMVLLLDILTM----CSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQK 846 (1138)
Q Consensus 771 ~~~~~S~Kl~~L~eiL~~----~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~ 846 (1138)
....-.|+..+.+.|.. ....+.|+|||+.+..+||-|+.++.+ +++.+.||||+|+..+|+.
T Consensus 467 -~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~------------r~vg~IRIDGst~s~~R~l 533 (689)
T KOG1000|consen 467 -SLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK------------RKVGSIRIDGSTPSHRRTL 533 (689)
T ss_pred -HHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH------------cCCCeEEecCCCCchhHHH
Confidence 00123466666666665 345688999999999999999999987 7899999999999999999
Q ss_pred HHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHH
Q 001149 847 LVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 926 (1138)
Q Consensus 847 ~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~ 926 (1138)
+++.|+. +.+++|-++|..|+|.||+|++|+.|||.+.+|||....||.+|+||+||+..|.||+|+++||+|+.++.
T Consensus 534 l~qsFQ~--seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp 611 (689)
T KOG1000|consen 534 LCQSFQT--SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWP 611 (689)
T ss_pred HHHHhcc--ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHH
Confidence 9999998 56788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccc
Q 001149 927 RQVTKEGLAARVVDR 941 (1138)
Q Consensus 927 rq~~K~~l~~~vvd~ 941 (1138)
....|......+-..
T Consensus 612 ~l~~KL~vl~s~gl~ 626 (689)
T KOG1000|consen 612 MLQQKLDVLGSVGLS 626 (689)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999877666443
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.2e-53 Score=532.13 Aligned_cols=451 Identities=18% Similarity=0.237 Sum_probs=326.5
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 379 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 379 l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
....|.|||+..+.++.. ....++|||||||||||++|++++..++..+. .+++|||||.+|+.||
T Consensus 149 ~~~~l~pHQl~~~~~vl~------------~~~~R~LLADEvGLGKTIeAglil~~l~~~g~--~~rvLIVvP~sL~~QW 214 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGR------------RHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR--AERVLILVPETLQHQW 214 (956)
T ss_pred CCCCCCHHHHHHHHHHhh------------ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC--CCcEEEEcCHHHHHHH
Confidence 345699999999877643 34578999999999999999999988876653 5799999999999999
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchhHH-HHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRDRR-AELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~~r-~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
..|+.+|+.- .+.++.+..-... ......| ...+++|++|+.++.- . .....++...||+||
T Consensus 215 ~~El~~kF~l-----~~~i~~~~~~~~~~~~~~~pf-~~~~~vI~S~~~l~~~--------~---~~~~~l~~~~wdlvI 277 (956)
T PRK04914 215 LVEMLRRFNL-----RFSLFDEERYAEAQHDADNPF-ETEQLVICSLDFLRRN--------K---QRLEQALAAEWDLLV 277 (956)
T ss_pred HHHHHHHhCC-----CeEEEcCcchhhhcccccCcc-ccCcEEEEEHHHhhhC--------H---HHHHHHhhcCCCEEE
Confidence 9999888753 2333333211100 0000122 3467999999987631 1 122334556999999
Q ss_pred EcCCcccCCc---ccHHHHHHHhc--ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccC--Cc------
Q 001149 538 CDEAHMIKNT---RADTTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQN--PI------ 604 (1138)
Q Consensus 538 lDEaH~iKN~---~S~~skal~~l--~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~--pi------ 604 (1138)
|||||+++|. .|..++++..+ +++++++|||||+||++.|+|++++||+|+.|++...|...... |+
T Consensus 278 vDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~ 357 (956)
T PRK04914 278 VDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQA 357 (956)
T ss_pred EechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHH
Confidence 9999999953 46778888888 67899999999999999999999999999999999999875442 21
Q ss_pred -ccCCCCCCChHHHHHH------------------------HHHHHHHHHHHh-----HHHhhhhhhhhhhcCCCCeEEE
Q 001149 605 -ENGQHTNSTSEDVKIM------------------------NQRSHILYEQLK-----GFVQRMDMNVVKKDLPPKTVFV 654 (1138)
Q Consensus 605 -~~g~~~~s~~~~~~~~------------------------~~r~~~L~~~L~-----~~v~Rr~~~~v~~~LP~k~e~v 654 (1138)
..+... +....... ..+...+..++. .++.|+++..+. .+|++..+.
T Consensus 358 l~~~~~~--~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~ 434 (956)
T PRK04914 358 LLAGEKL--SDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHP 434 (956)
T ss_pred HhcCCcC--CHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeE
Confidence 112110 00000000 001222222222 356688888876 689999999
Q ss_pred EEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCcccccccc
Q 001149 655 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNV 734 (1138)
Q Consensus 655 v~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~ 734 (1138)
+.+++++..+..+..... ..+++ +.+|..+.....
T Consensus 435 ~~l~~~~~y~~~~~~~~~----------------------~~~~~-~l~pe~~~~~~~---------------------- 469 (956)
T PRK04914 435 IPLPLPEQYQTAIKVSLE----------------------ARARD-MLYPEQIYQEFE---------------------- 469 (956)
T ss_pred eecCCCHHHHHHHHHhHH----------------------HHHHh-hcCHHHHHHHHh----------------------
Confidence 999997653333321000 00111 112211000000
Q ss_pred ccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHh
Q 001149 735 VIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLS 814 (1138)
Q Consensus 735 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~ 814 (1138)
........++|+..|.++|+.. .++|+||||++..+++.|++.|.
T Consensus 470 ---------------------------------~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~ 514 (956)
T PRK04914 470 ---------------------------------DNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALR 514 (956)
T ss_pred ---------------------------------hhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHh
Confidence 0000123468999999999874 37899999999999999999996
Q ss_pred hCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHH
Q 001149 815 KLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 894 (1138)
Q Consensus 815 ~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~ 894 (1138)
. ..|+++..++|+++..+|+++++.|+++++ .++ +||+|.+||+|+||+.|++||+||+||||..++
T Consensus 515 ~-----------~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~-~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~e 581 (956)
T PRK04914 515 E-----------REGIRAAVFHEGMSIIERDRAAAYFADEED-GAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLE 581 (956)
T ss_pred h-----------ccCeeEEEEECCCCHHHHHHHHHHHhcCCC-Ccc-EEEechhhccCCCcccccEEEEecCCCCHHHHH
Confidence 4 268999999999999999999999997432 344 578899999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccccccc-ccCCHHHHHHcc
Q 001149 895 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLF 957 (1138)
Q Consensus 895 QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~~~~-r~~s~~el~~Lf 957 (1138)
|||||++|+||+++|.||.++.++|+|++|++....|..+++.++...+.. ..| .++|.+.+
T Consensus 582 QRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~-~~~l~~~l 644 (956)
T PRK04914 582 QRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEF-GDELIPYL 644 (956)
T ss_pred HHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999998888765433 333 35555555
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.4e-52 Score=501.09 Aligned_cols=499 Identities=28% Similarity=0.328 Sum_probs=363.9
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc-----cCCCceEEEeCcchHHHHHHH
Q 001149 387 QVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN-----LGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 387 Q~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~-----~~~k~vLIV~P~sll~qW~~E 461 (1138)
|.....|+|..- .....-.|||+||+||+|||+++|+++........ ...+.+|||||.+++.||..|
T Consensus 135 ~~~~~~~~~~~~-------~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~e 207 (674)
T KOG1001|consen 135 LKQKYRWSLLKS-------REQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTE 207 (674)
T ss_pred HHHHHHHHhhcc-------cccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHH
Confidence 555566665421 13356789999999999999999999976543332 346789999999999999999
Q ss_pred HHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCC
Q 001149 462 FMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEA 541 (1138)
Q Consensus 462 ~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEa 541 (1138)
+.+.... ..+.+++++| +.+-... ...++||+|||.++.+. .+....|-+||+|||
T Consensus 208 lek~~~~--~~l~v~v~~g--r~kd~~e----l~~~dVVltTy~il~~~----------------~l~~i~w~Riildea 263 (674)
T KOG1001|consen 208 LEKVTEE--DKLSIYVYHG--RTKDKSE----LNSYDVVLTTYDILKNS----------------PLVKIKWLRIVLDEA 263 (674)
T ss_pred HhccCCc--cceEEEEecc--cccccch----hcCCceEEeeHHHhhcc----------------cccceeEEEEEeccc
Confidence 9665543 3478888888 2111111 24567999999998752 233358999999999
Q ss_pred cccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHH
Q 001149 542 HMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMN 621 (1138)
Q Consensus 542 H~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~~~~ 621 (1138)
|.|+|.+++.++++..+.+.+||+|||||+||++.|+|+++.|+.-+++.....|...+..|+..+.+.
T Consensus 264 ~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~----------- 332 (674)
T KOG1001|consen 264 HTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYK----------- 332 (674)
T ss_pred cccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999998877541
Q ss_pred HHHHHHHHHHhHHHhhhhhhhh-----hhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccc----hHHHHhhHHH
Q 001149 622 QRSHILYEQLKGFVQRMDMNVV-----KKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVS----NEKIRKSFFA 692 (1138)
Q Consensus 622 ~r~~~L~~~L~~~v~Rr~~~~v-----~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~----~~~~~~~~l~ 692 (1138)
.-...++-.|+.++.||++... ...|||+...++.+.++..++.+|..+............ .......++.
T Consensus 333 ~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~ 412 (674)
T KOG1001|consen 333 EGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLK 412 (674)
T ss_pred HHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHH
Confidence 1223366678889999988622 237999999999999999999999988764332222111 1123346788
Q ss_pred HHHHHHHHhcCccccccccccCC-CCCcc---------ccCC---CCccccccccccCCCCcc----chhhhcCCCC--C
Q 001149 693 GYQALAQIWNHPGILQLTKDKGY-PSRED---------AEDS---SSDENMDYNVVIGEKPRN----MNDFLQGKND--D 753 (1138)
Q Consensus 693 ~l~~Lrki~~hP~ll~~~~~~~~-~~~e~---------~~d~---~~d~~~d~~~~~~~~~~~----~~d~~~~~~~--~ 753 (1138)
.+.+||++|+||.++........ ..... ...+ ...-..+........... +...+..... .
T Consensus 413 ~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~ 492 (674)
T KOG1001|consen 413 NLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPC 492 (674)
T ss_pred HHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCC
Confidence 88999999999998753322110 00000 0000 000000000000000000 0000000000 0
Q ss_pred ccchhhh-hhhhhhccc-----ccccCCCchHHHHHHHHHHhhcCCC-eEEEEcCCcchHHHHHHHHhhCCCCCCCcccc
Q 001149 754 GFFQKDW-WNDLLHEHT-----YKELDYSGKMVLLLDILTMCSNMGD-KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLW 826 (1138)
Q Consensus 754 ~~~~~~~-~~~l~~~~~-----~~~~~~S~Kl~~L~eiL~~~~~~g~-KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~ 826 (1138)
....... ...++.... ......|.|+..+..+|........ |+|||||++.++++++..|..
T Consensus 493 ~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~----------- 561 (674)
T KOG1001|consen 493 PLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF----------- 561 (674)
T ss_pred cHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh-----------
Confidence 0000000 000111000 0011268899999999985544344 999999999999999999884
Q ss_pred cCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC
Q 001149 827 KKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 906 (1138)
Q Consensus 827 ~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~ 906 (1138)
.|+.+.+++|.++...|.+.+..|+. ++.++|+|+|.+|||.||||+.|++||++||+|||+.+.|||+|+||+||+
T Consensus 562 -~~~~~~~~~g~~~~~~r~~s~~~~~~--~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~ 638 (674)
T KOG1001|consen 562 -KGFVFLRYDGEMLMKIRTKSFTDFPC--DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQT 638 (674)
T ss_pred -cccccchhhhhhHHHHHHhhhccccc--CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccc
Confidence 68999999999999999999999996 566778999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccc
Q 001149 907 KPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 941 (1138)
Q Consensus 907 k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~ 941 (1138)
|+|.|+||+..+|+|++|...|..|+.+...+.+.
T Consensus 639 k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 639 KPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred ceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999998877654
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=5.7e-51 Score=486.02 Aligned_cols=383 Identities=32% Similarity=0.472 Sum_probs=302.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
..|.|||.+|++|+.... ..+..+||||+||||||+|+|.|+..++..... .+|.|+++|.+++.||..
T Consensus 294 g~L~~~qleGln~L~~~w----------s~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~-~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISW----------SPGVDAILADEMGLGKTVQSIVFLYSLPKEIHS-PGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccccccchhhhhhhhccc----------ccCCCcccchhhcCCceeeEEEEEeecccccCC-CCCceeeccCccccCCCC
Confidence 789999999999995433 577899999999999999999999998876543 479999999999999999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHh--------------------hcCCEEEEccchhhcccccccccchh
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR--------------------AKGGVFLIGYTAFRNLSFGKHVKDRN 520 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~--------------------~~~~VvIity~~~r~l~~~~~~~~~~ 520 (1138)
|+..|+|. +.+..+.+..+.+-.-....+. ....+.+++|++..+ +
T Consensus 363 e~~~wap~----~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~--------~-- 428 (696)
T KOG0383|consen 363 EFELWAPS----FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI--------D-- 428 (696)
T ss_pred chhccCCC----cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--------C--
Confidence 99999997 5666666644322111111111 122344555544321 1
Q ss_pred hHHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhc
Q 001149 521 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 600 (1138)
Q Consensus 521 ~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f 600 (1138)
..-+....|.++|+||+|+++|..|..+..+......++++|||||+|||+.||+++++|+.|+.|.+...|.+.|
T Consensus 429 ----~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~ 504 (696)
T KOG0383|consen 429 ----QSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEF 504 (696)
T ss_pred ----HHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhc
Confidence 1123334899999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccc
Q 001149 601 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR 680 (1138)
Q Consensus 601 ~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~ 680 (1138)
..-.. ......|+.++.+++.||.+.++...+|+|++-++.+.|++.|.++|+.++... +..
T Consensus 505 ~d~~~---------------~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n-~~~-- 566 (696)
T KOG0383|consen 505 HDISC---------------EEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRN-WQG-- 566 (696)
T ss_pred chhhH---------------HHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCC-hHH--
Confidence 65221 123445889999999999999999999999999999999999999999987642 111
Q ss_pred cchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhh
Q 001149 681 VSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDW 760 (1138)
Q Consensus 681 ~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 760 (1138)
.......-+++..++.|++.|+||+++......... + ..
T Consensus 567 l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~-------------------------------------~----~~ 605 (696)
T KOG0383|consen 567 LLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEEN-------------------------------------G----EY 605 (696)
T ss_pred HhhcchhHHHHHHHHHHHHhhcCcccCccccccccc-------------------------------------h----HH
Confidence 111222346788999999999999988641110000 0 00
Q ss_pred hhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCC
Q 001149 761 WNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTE 840 (1138)
Q Consensus 761 ~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts 840 (1138)
..-..+..|+|+.+|..+++.+...|+||+||+|++.++|++++++.. .| .|.|+||..+
T Consensus 606 -------~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~------------~~-~~~r~dG~~~ 665 (696)
T KOG0383|consen 606 -------LGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTY------------EG-KYERIDGPIT 665 (696)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhc------------cC-cceeccCCcc
Confidence 001123568999999999999999999999999999999999999996 56 9999999999
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 841 SSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 841 ~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
...|+.+|++||.+. ..-.|||+||+|||+|
T Consensus 666 ~~~rq~ai~~~n~~~-~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 666 GPERQAAIDRFNAPG-SNQFCFLLSTRAGGLG 696 (696)
T ss_pred chhhhhhccccCCCC-ccceEEEeecccccCC
Confidence 999999999999764 4557999999999998
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.2e-39 Score=369.36 Aligned_cols=296 Identities=30% Similarity=0.453 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc-CCCceEEEeCcchHHHHHHHHHH
Q 001149 386 HQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPVNVLHNWKQEFMK 464 (1138)
Q Consensus 386 hQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~-~~k~vLIV~P~sll~qW~~E~~k 464 (1138)
||+.||.||++....... ........||||||+||+|||+++|+++..+...... +.+++|||||.+++.||..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~-~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEY-PNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----T-TSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcc-cccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhcc
Confidence 899999999987511111 1222567899999999999999999999977665432 23469999999999999999999
Q ss_pred HCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCccc
Q 001149 465 WRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI 544 (1138)
Q Consensus 465 w~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~i 544 (1138)
|++.. .++++.+.+.. .+......+...++++|++|+++.... ..... ..+...+|++||+||||.+
T Consensus 80 ~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~~~vvi~ty~~~~~~~------~~~~~---~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 80 WFDPD--SLRVIIYDGDS--ERRRLSKNQLPKYDVVITTYETLRKAR------KKKDK---EDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp HSGT---TS-EEEESSSC--HHHHTTSSSCCCSSEEEEEHHHHH--T------STHTT---HHHHTSEEEEEEETTGGGG
T ss_pred ccccc--ccccccccccc--ccccccccccccceeeecccccccccc------ccccc---cccccccceeEEEeccccc
Confidence 99531 36888887765 111222334567899999999987110 00111 1222347999999999999
Q ss_pred CCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHHHHH
Q 001149 545 KNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS 624 (1138)
Q Consensus 545 KN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~ 624 (1138)
||..+..++++..+.+.++|+|||||++|++.|+|++++||.|+.+++...|.+.|..+ .........
T Consensus 147 k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~ 214 (299)
T PF00176_consen 147 KNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENI 214 (299)
T ss_dssp TTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHH
T ss_pred ccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998765 222334556
Q ss_pred HHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccc--hHHHHhhHHHHHHHHHHHhc
Q 001149 625 HILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVS--NEKIRKSFFAGYQALAQIWN 702 (1138)
Q Consensus 625 ~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~--~~~~~~~~l~~l~~Lrki~~ 702 (1138)
..|...+++++.|++..++...||+..++++.++||+.|+.+|+.+............ .......++..+.+||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 7799999999999999999889999999999999999999999998876544333222 23445678999999999999
Q ss_pred Ccccc
Q 001149 703 HPGIL 707 (1138)
Q Consensus 703 hP~ll 707 (1138)
||.|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.1e-37 Score=374.04 Aligned_cols=353 Identities=17% Similarity=0.297 Sum_probs=251.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHH
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNW 458 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW 458 (1138)
...|||||.+++.+|+.+ ....+|||...||+|||+++++++..+ .+++|||||..+ +.||
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-----------gr~r~GIIvLPtGaGKTlvai~aa~~l-------~k~tLILvps~~Lv~QW 314 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKSLVGVTAACTV-------KKSCLVLCTSAVSVEQW 314 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-----------CCCCCcEEEeCCCCChHHHHHHHHHHh-------CCCEEEEeCcHHHHHHH
Confidence 467999999999998642 233689999999999999999988764 368999999775 8899
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
.+||.+|+.- .+..+..+.+..+.. +....+|+|+||.++.+... +.......+..+....|++||+
T Consensus 315 ~~ef~~~~~l--~~~~I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~----r~~~~~~~l~~l~~~~~gLII~ 381 (732)
T TIGR00603 315 KQQFKMWSTI--DDSQICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGK----RSYESEKVMEWLTNREWGLILL 381 (732)
T ss_pred HHHHHHhcCC--CCceEEEEecCcccc-------cccCCcEEEEEHHHhhcccc----cchhhhHHHHHhccccCCEEEE
Confidence 9999999743 124555555543221 22346899999999864311 1111111222233458999999
Q ss_pred cCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhh-ccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 539 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV-REGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL-~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||+|++.+ ....+.+..+.+++||+|||||+++. +.+..+.|+ .|..+.
T Consensus 382 DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye-------------------------- 431 (732)
T TIGR00603 382 DEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-------------------------- 431 (732)
T ss_pred EccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeee--------------------------
Confidence 99999953 34556777889999999999999875 233333332 232211
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhh--hcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVK--KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 695 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~--~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 695 (1138)
....++. ..|.+.....|+|+|++.. |..++..... .+..+
T Consensus 432 --------------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~---~~~yl~~~~~----------~k~~l---- 474 (732)
T TIGR00603 432 --------------------ANWMELQKKGFIANVQCAEVWCPMTPEF---YREYLRENSR----------KRMLL---- 474 (732)
T ss_pred --------------------cCHHHHHhCCccccceEEEEEecCCHHH---HHHHHHhcch----------hhhHH----
Confidence 0111111 2456666678999999865 4444321100 00000
Q ss_pred HHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCC
Q 001149 696 ALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDY 775 (1138)
Q Consensus 696 ~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 775 (1138)
. ...
T Consensus 475 ----~------------------------------------------------------------------------~~n 478 (732)
T TIGR00603 475 ----Y------------------------------------------------------------------------VMN 478 (732)
T ss_pred ----h------------------------------------------------------------------------hhC
Confidence 0 011
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+.++..+++.....++|+||||+++..++.+...|. ...|+|+|+..+|.+++++|+.
T Consensus 479 p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----------------~~~I~G~ts~~ER~~il~~Fr~-- 539 (732)
T TIGR00603 479 PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----------------KPFIYGPTSQQERMQILQNFQH-- 539 (732)
T ss_pred hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----------------CceEECCCCHHHHHHHHHHHHh--
Confidence 358888888888766689999999999888777766553 2348999999999999999986
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCC-CcchHHHHHHHHHhhCCCC-----cEEEEEEecCCCHHHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTK-----PVFAYRLMAHGTMEEKIYK 926 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-NP~~~~QAigR~~RiGQ~k-----~V~VyrLv~~gTiEekI~~ 926 (1138)
++.+.+ |+++++|++||||+.|+.||++++++ |+..++||+||+.|.+..+ +.++|.|++.+|.|+..-.
T Consensus 540 ~~~i~v-Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 540 NPKVNT-IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CCCccE-EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 345554 55569999999999999999999986 9999999999999998764 4799999999999998753
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.5e-31 Score=334.99 Aligned_cols=460 Identities=17% Similarity=0.142 Sum_probs=273.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.+|+||.+.+...++ .++|++++||+|||++++.++...+.. ..+++|||||. .++.||..
T Consensus 15 ~~r~yQ~~~~~~~l~---------------~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~ 76 (773)
T PRK13766 15 EARLYQQLLAATALK---------------KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAE 76 (773)
T ss_pred CccHHHHHHHHHHhc---------------CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHH
Confidence 579999998876642 389999999999999999888877632 24689999997 68889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++.+++... ...+..+.+... ..|. ..| ..++|+++|+..+.+..... .+....|++||+|
T Consensus 77 ~~~~~~~~~--~~~v~~~~g~~~~~~r~---~~~-~~~~iiv~T~~~l~~~l~~~------------~~~~~~~~liVvD 138 (773)
T PRK13766 77 FFRKFLNIP--EEKIVVFTGEVSPEKRA---ELW-EKAKVIVATPQVIENDLIAG------------RISLEDVSLLIFD 138 (773)
T ss_pred HHHHHhCCC--CceEEEEeCCCCHHHHH---HHH-hCCCEEEECHHHHHHHHHcC------------CCChhhCcEEEEE
Confidence 999987531 235555555433 3332 223 46789999999876421110 1112378999999
Q ss_pred CCcccCCcccHHHHHHHhc---ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCCh----HHHHhhccCCcccCCCCCC
Q 001149 540 EAHMIKNTRADTTQALKQV---KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS----HEFRNRFQNPIENGQHTNS 612 (1138)
Q Consensus 540 EaH~iKN~~S~~skal~~l---~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~----~eF~~~f~~pi~~g~~~~s 612 (1138)
|||++.+..+..+.+-... +..++++|||||.++ ...+..++..|....+... ..+...+..+-........
T Consensus 139 EaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l 217 (773)
T PRK13766 139 EAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVEL 217 (773)
T ss_pred CCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCC
Confidence 9999987655443332222 456699999999875 4556666655543221111 1111111111000000111
Q ss_pred ChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhc-CCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 001149 613 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD-LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 691 (1138)
Q Consensus 613 ~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~-LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l 691 (1138)
......++..|..++.++........ +++....+....+...+..++..+.... .........+
T Consensus 218 --------~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-------~~~~~~~~~~ 282 (773)
T PRK13766 218 --------PEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDD-------SEGYEAISIL 282 (773)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCc-------hHHHHHHHHH
Confidence 11223355666666665544322211 2222222222233333444433322100 0000001111
Q ss_pred HHHHHHHHHhcC-----ccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhh
Q 001149 692 AGYQALAQIWNH-----PGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLH 766 (1138)
Q Consensus 692 ~~l~~Lrki~~h-----P~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~ 766 (1138)
+.+..++..... ...+......... .....+.. .....+.. +. .. ...+.
T Consensus 283 ~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~--~~~~~~~~--------------~~~~~l~~----~~----~~-~~~~~ 337 (773)
T PRK13766 283 AEAMKLRHAVELLETQGVEALRRYLERLRE--EARSSGGS--------------KASKRLVE----DP----RF-RKAVR 337 (773)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHh--hccccCCc--------------HHHHHHHh----CH----HH-HHHHH
Confidence 111111111000 0000000000000 00000000 00000000 00 00 00000
Q ss_pred cccccccCCCchHHHHHHHHHHhh--cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCC------
Q 001149 767 EHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGR------ 838 (1138)
Q Consensus 767 ~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGs------ 838 (1138)
........++|+..|.++|.+.. ..+.|+|||+++..+++.|.++|.. .|+.+.+++|.
T Consensus 338 -~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~------------~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 338 -KAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK------------EGIKAVRFVGQASKDGD 404 (773)
T ss_pred -HHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh------------CCCceEEEEcccccccc
Confidence 00011244789999999999876 5688999999999999999999975 57888899887
Q ss_pred --CCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEec
Q 001149 839 --TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 916 (1138)
Q Consensus 839 --ts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~ 916 (1138)
++..+|..++++|+++ .+. +|++|.++++|+|++.+++||+||++|||...+|++||++|.|+ ..||.|++
T Consensus 405 ~~~~~~~r~~~~~~F~~g---~~~-vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~ 477 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAG---EFN-VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIA 477 (773)
T ss_pred CCCCHHHHHHHHHHHHcC---CCC-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEe
Confidence 7888999999999973 444 58899999999999999999999999999999998888888765 67899999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 001149 917 HGTMEEKIYKRQVTKEGLAARV 938 (1138)
Q Consensus 917 ~gTiEekI~~rq~~K~~l~~~v 938 (1138)
.+|.||.+|..+..|...+...
T Consensus 478 ~~t~ee~~y~~~~~ke~~~~~~ 499 (773)
T PRK13766 478 KGTRDEAYYWSSRRKEKKMKEE 499 (773)
T ss_pred CCChHHHHHHHhhHHHHHHHHH
Confidence 9999999999888877766433
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.98 E-value=1.8e-32 Score=333.71 Aligned_cols=279 Identities=18% Similarity=0.250 Sum_probs=198.6
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhc--------------ccCCCceEEEeCcchHHHHHHHHHHHCCCCCCCeEEE
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSV--------------NLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF 476 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~--------------~~~~k~vLIV~P~sll~qW~~E~~kw~p~~~~~l~V~ 476 (1138)
|..+++|||||+|||...++.....+... ....|++|||||.+++.||..||+++++.. ++|+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~---lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSL---LKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhcccc---ceEE
Confidence 34479999999999999988776543111 123579999999999999999999999874 6888
Q ss_pred EecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccc-c-chhhHHH------HhhhhccCCCEEEEcCCcccCCcc
Q 001149 477 MLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-K-DRNMARE------ICHALQDGPDILVCDEAHMIKNTR 548 (1138)
Q Consensus 477 ~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~-~-~~~~~~~------~~~~l~~~~dlVIlDEaH~iKN~~ 548 (1138)
.|.|..+.....- .-...++|++|||+.+|+-.+.... . ++.+..+ -..++...|.+|++|||+.+....
T Consensus 451 ~Y~Girk~~~~~~--~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSP--FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred EEechhhhcccCc--hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 8887544321111 1225689999999999975443211 1 1111100 012333478899999999999999
Q ss_pred cHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHH
Q 001149 549 ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILY 628 (1138)
Q Consensus 549 S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~ 628 (1138)
|+.++.+..|.+.++|++||||+|+ +.+++.++.||+-.+|+....|.+....++... .....++
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--------------a~~~~~~ 593 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--------------AKCEPLL 593 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--------------hhhhhHH
Confidence 9999999999999999999999999 999999999999999999999987766554322 2233456
Q ss_pred HHHhHHHhhhhhhhhhh--cCCCCeEEEEEecCCHHHHHHHHHHH----Hhhccc------------c-cccchHHHHhh
Q 001149 629 EQLKGFVQRMDMNVVKK--DLPPKTVFVITVKLSPLQRRLYKRFL----DLHGFT------------N-DRVSNEKIRKS 689 (1138)
Q Consensus 629 ~~L~~~v~Rr~~~~v~~--~LP~k~e~vv~v~Ls~~Q~~lY~~~l----~~~~~~------------~-~~~~~~~~~~~ 689 (1138)
+.+...+-|+.+..+.. .+||..+.+....+++.+..+|+..- ..+... . ...........
T Consensus 594 dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~ 673 (1394)
T KOG0298|consen 594 DLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAI 673 (1394)
T ss_pred HHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHH
Confidence 67777788887777765 58999888888888888877775321 111000 0 00011112235
Q ss_pred HHHHHHHHHHHhcCcccccc
Q 001149 690 FFAGYQALAQIWNHPGILQL 709 (1138)
Q Consensus 690 ~l~~l~~Lrki~~hP~ll~~ 709 (1138)
+...+.+||++|+||.....
T Consensus 674 i~~~l~rLRq~Cchplv~~~ 693 (1394)
T KOG0298|consen 674 ILKWLLRLRQACCHPLVGNS 693 (1394)
T ss_pred HHHHHHHHHHhhcccccccC
Confidence 67788899999999976543
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=9.1e-26 Score=255.84 Aligned_cols=468 Identities=19% Similarity=0.189 Sum_probs=262.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~~ 460 (1138)
.-|.||..-+.-.+. .+++++-.+|||||+.|+.+++..++... +++|+++| ..||.|-..
T Consensus 15 e~R~YQ~~i~a~al~---------------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~---~kvlfLAPTKPLV~Qh~~ 76 (542)
T COG1111 15 EPRLYQLNIAAKALF---------------KNTLVVLPTGLGKTFIAAMVIANRLRWFG---GKVLFLAPTKPLVLQHAE 76 (542)
T ss_pred cHHHHHHHHHHHHhh---------------cCeEEEecCCccHHHHHHHHHHHHHHhcC---CeEEEecCCchHHHHHHH
Confidence 458899887765532 58999999999999999999998777642 38999999 568999999
Q ss_pred HHHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
-+.+.+.- .+-.+..+.|..+ .+|.. .| ..+.|++.|++.+.|-.... .+-...+.++|+|
T Consensus 77 ~~~~v~~i--p~~~i~~ltGev~p~~R~~---~w-~~~kVfvaTPQvveNDl~~G------------rid~~dv~~lifD 138 (542)
T COG1111 77 FCRKVTGI--PEDEIAALTGEVRPEEREE---LW-AKKKVFVATPQVVENDLKAG------------RIDLDDVSLLIFD 138 (542)
T ss_pred HHHHHhCC--ChhheeeecCCCChHHHHH---HH-hhCCEEEeccHHHHhHHhcC------------ccChHHceEEEec
Confidence 99988743 2245666666543 33443 35 46789999999987632111 1112267899999
Q ss_pred CCcccCCcccHHHHHH--Hhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCCh---HHHHhhccCCcccCCCCCCC
Q 001149 540 EAHMIKNTRADTTQAL--KQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS---HEFRNRFQNPIENGQHTNST 613 (1138)
Q Consensus 540 EaH~iKN~~S~~skal--~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~---~eF~~~f~~pi~~g~~~~s~ 613 (1138)
|||+.-+..+-.+-+= .+. +..+.++||||| -+++..+-..++-|..+-.--. +.=...|...+.--...-.-
T Consensus 139 EAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~l 217 (542)
T COG1111 139 EAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDL 217 (542)
T ss_pred hhhhccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccC
Confidence 9999876665443332 222 455789999999 4455556666655543321000 00001111111111100111
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHH
Q 001149 614 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 693 (1138)
Q Consensus 614 ~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~ 693 (1138)
+...... ...|..++++.+..-. ..-.+....+. .++++.....................-+.++.
T Consensus 218 p~e~~~i---r~~l~~~l~~~Lk~L~---------~~g~~~~~~~~--~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~ 283 (542)
T COG1111 218 PEEIKEI---RDLLRDALKPRLKPLK---------ELGVIESSSPV--SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAE 283 (542)
T ss_pred cHHHHHH---HHHHHHHHHHHHHHHH---------HcCceeccCcc--cHhHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 1111111 1112222222221100 00000111111 11222221100000000000000000011111
Q ss_pred HHHHHHHhcCccccccccccCCCC----CccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhccc
Q 001149 694 YQALAQIWNHPGILQLTKDKGYPS----REDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHT 769 (1138)
Q Consensus 694 l~~Lrki~~hP~ll~~~~~~~~~~----~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 769 (1138)
...+..+.. ++ +..+... .+...+. ...+. ......+. .+..+... .. ++...
T Consensus 284 ~~kl~~a~e---ll---etqGi~~~~~Yl~~l~e~---------~~~~~-sk~a~~l~----~d~~~~~a-l~-~~~~~- 340 (542)
T COG1111 284 AIKLAHALE---LL---ETQGIRPFYQYLEKLEEE---------ATKGG-SKAAKSLL----ADPYFKRA-LR-LLIRA- 340 (542)
T ss_pred HHHHHHHHH---HH---HhhChHHHHHHHHHHHHH---------hcccc-hHHHHHHh----cChhhHHH-HH-HHHHh-
Confidence 111111100 00 0000000 0000000 00000 00000000 00000000 00 00000
Q ss_pred ccccCCCchHHHHHHHHHHhh--cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceE-EEEeC--------C
Q 001149 770 YKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW-YRLDG--------R 838 (1138)
Q Consensus 770 ~~~~~~S~Kl~~L~eiL~~~~--~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~-~rldG--------s 838 (1138)
....-..|||..+.++|++.. ..+.|+|||++|+.+++.|..+|... |+.. .++-| +
T Consensus 341 ~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~------------~~~~~~rFiGQa~r~~~~G 408 (542)
T COG1111 341 DESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI------------GIKARVRFIGQASREGDKG 408 (542)
T ss_pred ccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc------------CCcceeEEeeccccccccc
Confidence 122234689999999999876 45789999999999999999999974 3332 24444 4
Q ss_pred CCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 839 TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 839 ts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
|++.+..++|++|+. +.+. +|++|.+|.+||+++..+-||+|||.-+|...+||.||.+| ++.=.||-|+++|
T Consensus 409 MsQkeQ~eiI~~Fr~---Ge~n-VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~g 481 (542)
T COG1111 409 MSQKEQKEIIDQFRK---GEYN-VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEG 481 (542)
T ss_pred cCHHHHHHHHHHHhc---CCce-EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecC
Confidence 889999999999996 4454 59999999999999999999999999999999999999988 4677899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcccc
Q 001149 919 TMEEKIYKRQVTKEGLAARVVDRQ 942 (1138)
Q Consensus 919 TiEekI~~rq~~K~~l~~~vvd~~ 942 (1138)
|-|+.-|.....|.+.+...+.+.
T Consensus 482 trdeayy~~s~rke~~m~e~i~~~ 505 (542)
T COG1111 482 TRDEAYYYSSRRKEQKMIESIRGL 505 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987776665543
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=4.2e-25 Score=262.71 Aligned_cols=369 Identities=18% Similarity=0.232 Sum_probs=258.2
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hH
Q 001149 377 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VL 455 (1138)
Q Consensus 377 ~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll 455 (1138)
......|+|||.+++.-++.+.- . ...|++...+|.|||+.++.++..+ ..++|||||.. ++
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~---------~-~~~gvivlpTGaGKT~va~~~~~~~-------~~~~Lvlv~~~~L~ 93 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRR---------T-ERRGVIVLPTGAGKTVVAAEAIAEL-------KRSTLVLVPTKELL 93 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcc---------c-CCceEEEeCCCCCHHHHHHHHHHHh-------cCCEEEEECcHHHH
Confidence 45566799999999987765421 2 6889999999999999999988876 23599999965 67
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCE
Q 001149 456 HNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 535 (1138)
Q Consensus 456 ~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dl 535 (1138)
.||.+.+.+++... -.+..+.+..+. +.. .+|.+.+|+++.... .+..+....|++
T Consensus 94 ~Qw~~~~~~~~~~~---~~~g~~~~~~~~--------~~~-~~i~vat~qtl~~~~------------~l~~~~~~~~~l 149 (442)
T COG1061 94 DQWAEALKKFLLLN---DEIGIYGGGEKE--------LEP-AKVTVATVQTLARRQ------------LLDEFLGNEFGL 149 (442)
T ss_pred HHHHHHHHHhcCCc---cccceecCceec--------cCC-CcEEEEEhHHHhhhh------------hhhhhcccccCE
Confidence 89999998887642 123333332211 111 469999999875310 223344448999
Q ss_pred EEEcCCcccCCcccHHHHHHHhcccCe-EEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCCh
Q 001149 536 LVCDEAHMIKNTRADTTQALKQVKCQR-RIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 614 (1138)
Q Consensus 536 VIlDEaH~iKN~~S~~skal~~l~~~~-RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~ 614 (1138)
||+||+|++-.+. ....+..+...+ +++|||||..........+..++.|
T Consensus 150 iI~DE~Hh~~a~~--~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~--------------------------- 200 (442)
T COG1061 150 IIFDEVHHLPAPS--YRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGP--------------------------- 200 (442)
T ss_pred EEEEccccCCcHH--HHHHHHhhhcccceeeeccCceeecCCchhHHHHhcCC---------------------------
Confidence 9999999985443 333445556666 9999999974432333333333221
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhh-h-hcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHH
Q 001149 615 EDVKIMNQRSHILYEQLKGFVQRMDMNVV-K-KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFA 692 (1138)
Q Consensus 615 ~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v-~-~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~ 692 (1138)
.+......++ . ..|.|.....+.+.++......|.......... +.
T Consensus 201 -------------------~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~-------------~~ 248 (442)
T COG1061 201 -------------------IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFREL-------------LR 248 (442)
T ss_pred -------------------eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhh-------------hh
Confidence 1111111122 1 368889999999999999988887654322100 00
Q ss_pred HHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccc
Q 001149 693 GYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE 772 (1138)
Q Consensus 693 ~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 772 (1138)
....++ .++ ......
T Consensus 249 ~~~~~~-~~~----------------------------------------------------------------~~~~~~ 263 (442)
T COG1061 249 ARGTLR-AEN----------------------------------------------------------------EARRIA 263 (442)
T ss_pred hhhhhh-HHH----------------------------------------------------------------HHHHHh
Confidence 000000 000 000001
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
.....|+..+..++.... .+.+++||+.+...+..|...+.. .|+ ...++|.++..+|..++++|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~------------~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 264 IASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLA------------PGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcC------------CCc-eEEEECCCCHHHHHHHHHHHH
Confidence 123457777778887665 789999999999999999999875 455 889999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhh-CCCCc--EEEEEEecCCCHHHHHHHHHH
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY-GQTKP--VFAYRLMAHGTMEEKIYKRQV 929 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~Ri-GQ~k~--V~VyrLv~~gTiEekI~~rq~ 929 (1138)
... +. .|++++++.+|+|++.|+.+|+..|.=++..+.|++||+.|. ..++. ++.|-++...+.+..+.....
T Consensus 330 ~g~---~~-~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 330 TGG---IK-VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred cCC---CC-EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 742 33 689999999999999999999999999999999999999994 44444 788888899999888876655
Q ss_pred H
Q 001149 930 T 930 (1138)
Q Consensus 930 ~ 930 (1138)
.
T Consensus 406 ~ 406 (442)
T COG1061 406 L 406 (442)
T ss_pred h
Confidence 4
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=9e-25 Score=264.69 Aligned_cols=339 Identities=14% Similarity=0.161 Sum_probs=222.9
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~ 459 (1138)
..|+|||.+++..++. +..+|+...+|+|||+.+++++..+.... ..++|||||. .|+.||.
T Consensus 113 ~~~r~~Q~~av~~~l~--------------~~~~il~apTGsGKT~i~~~l~~~~~~~~---~~~vLilvpt~eL~~Q~~ 175 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK--------------NNRRLLNLPTSAGKSLIQYLLSRYYLENY---EGKVLIIVPTTSLVTQMI 175 (501)
T ss_pred CCCCHHHHHHHHHHHh--------------cCceEEEeCCCCCHHHHHHHHHHHHHhcC---CCeEEEEECcHHHHHHHH
Confidence 5799999999976542 25689999999999998876655443321 2389999996 6888999
Q ss_pred HHHHHHCCCCCCCeEE-EEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 460 QEFMKWRPSELKPLRV-FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V-~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
++|.+|.... ...+ ..+.+.... ..+.|+|+|++.+.... .. ....+++||+
T Consensus 176 ~~l~~~~~~~--~~~~~~i~~g~~~~----------~~~~I~VaT~qsl~~~~--------------~~-~~~~~~~iIv 228 (501)
T PHA02558 176 DDFVDYRLFP--REAMHKIYSGTAKD----------TDAPIVVSTWQSAVKQP--------------KE-WFDQFGMVIV 228 (501)
T ss_pred HHHHHhcccc--ccceeEEecCcccC----------CCCCEEEeeHHHHhhch--------------hh-hccccCEEEE
Confidence 9999986321 1222 223332211 34679999998864310 01 1237899999
Q ss_pred cCCcccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 539 DEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||||++... .....+..+ +++++++|||||-..... .+.+..++.| +.... +
T Consensus 229 DEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~-~~~~~~~fG~----------------i~~~v----~---- 281 (501)
T PHA02558 229 DECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRDGKAN-ILQYVGLFGD----------------IFKPV----T---- 281 (501)
T ss_pred Echhcccch--hHHHHHHhhhccceEEEEeccCCCcccc-HHHHHHhhCC----------------ceEEe----c----
Confidence 999999653 345666677 678999999999532211 1111111111 10000 0
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
..+++. ...+.+.....+.+..++.....+. .. .+-.. +
T Consensus 282 ---------~~~li~-----------~g~l~~~~~~~v~~~~~~~~~~~~~---------~~---------~~~~~---~ 320 (501)
T PHA02558 282 ---------TSQLME-----------EGQVTDLKINSIFLRYPDEDRVKLK---------GE---------DYQEE---I 320 (501)
T ss_pred ---------HHHHHh-----------CCCcCCceEEEEeccCCHHHhhhhc---------cc---------chHHH---H
Confidence 000000 0112222233344444432111000 00 00000 0
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
..+ .....
T Consensus 321 ~~l------------------------------------------------------------------------~~~~~ 328 (501)
T PHA02558 321 KYI------------------------------------------------------------------------TSHTK 328 (501)
T ss_pred HHH------------------------------------------------------------------------hccHH
Confidence 000 01123
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
+..++.+++..+...+.++|||+..+.+++.|.+.|.. .|+++..++|+++.++|..+++.|++ +
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~------------~g~~v~~i~G~~~~~eR~~i~~~~~~---~ 393 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK------------VYDKVYYVSGEVDTEDRNEMKKIAEG---G 393 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH------------cCCCEEEEeCCCCHHHHHHHHHHHhC---C
Confidence 55666677776667789999999999999999999986 58899999999999999999999985 3
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCC-cEEEEEEecCC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK-PVFAYRLMAHG 918 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k-~V~VyrLv~~g 918 (1138)
...|+|.|++..++|+|++..++||+++|+-+.....|++||++|.|..| .+.||.|+-.-
T Consensus 394 ~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 394 KGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred CCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 44556666699999999999999999999999999999999999998775 68999998643
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=6.7e-24 Score=236.97 Aligned_cols=361 Identities=20% Similarity=0.318 Sum_probs=246.6
Q ss_pred CccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEE
Q 001149 370 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 449 (1138)
Q Consensus 370 ~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV 449 (1138)
.+++.+.-.-...|||||...++.|+-+ ...+.||+.-..|.|||++.|+.+.+. .+.+||+
T Consensus 290 npdl~idLKPst~iRpYQEksL~KMFGN-----------gRARSGiIVLPCGAGKtLVGvTAa~ti-------kK~clvL 351 (776)
T KOG1123|consen 290 NPDLDIDLKPSTQIRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKTLVGVTAACTI-------KKSCLVL 351 (776)
T ss_pred CCCCCcCcCcccccCchHHHHHHHHhCC-----------CcccCceEEEecCCCCceeeeeeeeee-------cccEEEE
Confidence 3455555555678999999999999754 456789999999999999999877664 4789999
Q ss_pred eCcch-HHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhh
Q 001149 450 TPVNV-LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 528 (1138)
Q Consensus 450 ~P~sl-l~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~ 528 (1138)
|-.++ |.||+.+|..|..-.. -.+..+....+. ......||+|+||.|+..... ++ .-...+..+
T Consensus 352 cts~VSVeQWkqQfk~wsti~d--~~i~rFTsd~Ke-------~~~~~~gvvvsTYsMva~t~k----RS-~eaek~m~~ 417 (776)
T KOG1123|consen 352 CTSAVSVEQWKQQFKQWSTIQD--DQICRFTSDAKE-------RFPSGAGVVVTTYSMVAYTGK----RS-HEAEKIMDF 417 (776)
T ss_pred ecCccCHHHHHHHHHhhcccCc--cceEEeeccccc-------cCCCCCcEEEEeeehhhhccc----cc-HHHHHHHHH
Confidence 98776 8899999999985432 334444333221 123567899999999865321 11 112233334
Q ss_pred h-ccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhh-ccCCCCChHHHHhhccCCccc
Q 001149 529 L-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV-REGFLGSSHEFRNRFQNPIEN 606 (1138)
Q Consensus 529 l-~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL-~p~~lg~~~eF~~~f~~pi~~ 606 (1138)
+ ...|.++|+||.|.+ |.....+.+.-+.+.-.++||||-+... |=..=++|| .|.++. ..+..
T Consensus 418 l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------AnWmd---- 483 (776)
T KOG1123|consen 418 LRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------ANWMD---- 483 (776)
T ss_pred HhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------ccHHH----
Confidence 4 449999999999988 4444555556668899999999987642 111223443 333321 00000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHH
Q 001149 607 GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKI 686 (1138)
Q Consensus 607 g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~ 686 (1138)
|. -++ .+..-.--.|+|+||++ +|+.|+.....
T Consensus 484 --------------------L~--~kG------------hIA~VqCaEVWCpMt~e---Fy~eYL~~~t~---------- 516 (776)
T KOG1123|consen 484 --------------------LQ--KKG------------HIAKVQCAEVWCPMTPE---FYREYLRENTR---------- 516 (776)
T ss_pred --------------------HH--hCC------------ceeEEeeeeeecCCCHH---HHHHHHhhhhh----------
Confidence 00 001 12222334589999985 67776653210
Q ss_pred HhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhh
Q 001149 687 RKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLH 766 (1138)
Q Consensus 687 ~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~ 766 (1138)
+. .|+.
T Consensus 517 -kr---------------~lLy---------------------------------------------------------- 522 (776)
T KOG1123|consen 517 -KR---------------MLLY---------------------------------------------------------- 522 (776)
T ss_pred -hh---------------heee----------------------------------------------------------
Confidence 00 0000
Q ss_pred cccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHH
Q 001149 767 EHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQK 846 (1138)
Q Consensus 767 ~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~ 846 (1138)
+-+..|+.+..-+|+-....|+|+||||..+-.|....--|.+ -.|.|.|++.+|.+
T Consensus 523 ------vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----------------pfIYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 523 ------VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----------------PFIYGPTSQNERMK 579 (776)
T ss_pred ------ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----------------ceEECCCchhHHHH
Confidence 0113477777777887778999999999988666554433332 34789999999999
Q ss_pred HHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCC-CcchHHHHHHHHHhhCCC----CcEEEEEEecCCCHH
Q 001149 847 LVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQT----KPVFAYRLMAHGTME 921 (1138)
Q Consensus 847 ~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-NP~~~~QAigR~~RiGQ~----k~V~VyrLv~~gTiE 921 (1138)
++..|+. |+.+.-+.+| ++|...|+|+.||.+|-...+. +-..+.||.||+.|---. -.++.|-||..+|.|
T Consensus 580 ILqnFq~--n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 580 ILQNFQT--NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred HHHhccc--CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 9999998 5666656666 8999999999999999998876 566789999999997522 358999999999998
Q ss_pred HH
Q 001149 922 EK 923 (1138)
Q Consensus 922 ek 923 (1138)
-.
T Consensus 657 M~ 658 (776)
T KOG1123|consen 657 MY 658 (776)
T ss_pred HH
Confidence 54
No 28
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.89 E-value=1.4e-20 Score=225.63 Aligned_cols=465 Identities=16% Similarity=0.152 Sum_probs=256.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.||+||.+-++-.+ +.++|+|..||+|||+.|+.++..+++... .+++++.+|.. ||.|-..
T Consensus 62 ~lR~YQ~eivq~AL---------------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p--~~KiVF~aP~~pLv~QQ~a 124 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL---------------GKNTIIALPTGSGKTFIAAVIMKNHFEWRP--KGKVVFLAPTRPLVNQQIA 124 (746)
T ss_pred cccHHHHHHhHHhh---------------cCCeEEEeecCCCccchHHHHHHHHHhcCC--cceEEEeeCCchHHHHHHH
Confidence 59999999998662 589999999999999999999998888765 36999999964 7778888
Q ss_pred HHHHHCCCCCCCeEEEEecC--cchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLED--VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~--~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
.|..++-. ..+....+ .....|.. .| ...+|+++|...+.+......... ...|.++|+
T Consensus 125 ~~~~~~~~----~~~T~~l~~~~~~~~r~~---i~-~s~~vff~TpQil~ndL~~~~~~~-----------ls~fs~iv~ 185 (746)
T KOG0354|consen 125 CFSIYLIP----YSVTGQLGDTVPRSNRGE---IV-ASKRVFFRTPQILENDLKSGLHDE-----------LSDFSLIVF 185 (746)
T ss_pred HHhhccCc----ccceeeccCccCCCchhh---hh-cccceEEeChHhhhhhcccccccc-----------cceEEEEEE
Confidence 88887643 23333322 33444443 23 456899999999876321111000 125789999
Q ss_pred cCCcccCCcc--cHHHHHHHhc--ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCCh---------HHHHhhccCCcc
Q 001149 539 DEAHMIKNTR--ADTTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS---------HEFRNRFQNPIE 605 (1138)
Q Consensus 539 DEaH~iKN~~--S~~skal~~l--~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~---------~eF~~~f~~pi~ 605 (1138)
||||+..... +.+.+.+..+ ...+.|+|||||= ++....-..++=|.-. +.-. .+-++.-..|..
T Consensus 186 DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~ 263 (746)
T KOG0354|consen 186 DECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVD 263 (746)
T ss_pred cccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCc
Confidence 9999985433 3333333333 3447899999997 7777776666655544 2211 111111111111
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecC--CHHHHHHHHHHHHhhcccccccch
Q 001149 606 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKL--SPLQRRLYKRFLDLHGFTNDRVSN 683 (1138)
Q Consensus 606 ~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~L--s~~Q~~lY~~~l~~~~~~~~~~~~ 683 (1138)
-...+......|...+++++++.... .|++.....-.... ...+.+.|..+ . ..
T Consensus 264 ----------~~~~~~~~~~~f~~~i~p~l~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~ 319 (746)
T KOG0354|consen 264 ----------LSLCERDIEDPFGMIIEPLLQQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNG---------P-EN 319 (746)
T ss_pred ----------HHHhhhhhhhhHHHHHHHHHHHHHhc----CccccccccccccchhhhhhhhhccCC---------C-cc
Confidence 11112233344666677776655422 22221111100000 01111111000 0 00
Q ss_pred HHHHhhHHHHHHHHH----HHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhh
Q 001149 684 EKIRKSFFAGYQALA----QIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKD 759 (1138)
Q Consensus 684 ~~~~~~~l~~l~~Lr----ki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 759 (1138)
. ++-|.++..+. .+.+|---+..... ...+..+.... +. ...... +.....
T Consensus 320 q---~~~f~~~~~~~~~~~ll~~~gir~~~~l~-------~~~~f~~e~~~------~k---~~~~~~------e~~~~~ 374 (746)
T KOG0354|consen 320 Q---RNCFYALHLRKYNLALLISDGIRFVDALD-------YLEDFYEEVAL------KK---YLKLEL------EARLIR 374 (746)
T ss_pred c---hhhHHHHHHHHHHHHHHhhcchhhHHHHh-------hhhhhccccch------hH---HHHHHh------cchhhH
Confidence 0 11122222111 11111100000000 00000000000 00 000000 000000
Q ss_pred hhhhhhh---cccccccCCCchHHHHHHHHHHhhc--CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEE
Q 001149 760 WWNDLLH---EHTYKELDYSGKMVLLLDILTMCSN--MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 834 (1138)
Q Consensus 760 ~~~~l~~---~~~~~~~~~S~Kl~~L~eiL~~~~~--~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~r 834 (1138)
.+..... ..........+|++.|.++|..... ...++|||+.++..+..|..+|..+...+..+. |.-|-.-..
T Consensus 375 ~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~-~fiGq~~s~ 453 (746)
T KOG0354|consen 375 NFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE-IFIGQGKST 453 (746)
T ss_pred HHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc-eeeeccccc
Confidence 0011111 1111122458999999999987654 356999999999999999999985332221111 111111111
Q ss_pred EeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEE
Q 001149 835 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRL 914 (1138)
Q Consensus 835 ldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrL 914 (1138)
-.-+++..+.+++++.|++ |.+. +||+|.+|.+|||+..+|-||.||..-||...+||+|| +|--+. .++-|
T Consensus 454 ~~~gmtqk~Q~evl~~Fr~---G~~N-vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns---~~vll 525 (746)
T KOG0354|consen 454 QSTGMTQKEQKEVLDKFRD---GEIN-VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNS---KCVLL 525 (746)
T ss_pred cccccCHHHHHHHHHHHhC---CCcc-EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCC---eEEEE
Confidence 1135778899999999997 4554 58999999999999999999999999999999999999 775444 44444
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHccccc
Q 001149 915 MAHGTMEEKIYKRQVTKEGLAARVVDRQQ 943 (1138)
Q Consensus 915 v~~gTiEekI~~rq~~K~~l~~~vvd~~~ 943 (1138)
.+ +.=+-+--..+..|..+.+..+..-+
T Consensus 526 ~t-~~~~~~~E~~~~~~e~lm~~~i~~~q 553 (746)
T KOG0354|consen 526 TT-GSEVIEFERNNLAKEKLMNQTISKIQ 553 (746)
T ss_pred Ec-chhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44 43333333446677777776666544
No 29
>PTZ00110 helicase; Provisional
Probab=99.87 E-value=1.9e-20 Score=228.70 Aligned_cols=125 Identities=22% Similarity=0.238 Sum_probs=108.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|...|.++|..+...+.++|||++.....+.|...|.. .|+....++|.++..+|..+++.|++
T Consensus 360 ~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~------------~g~~~~~ihg~~~~~eR~~il~~F~~-- 425 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL------------DGWPALCIHGDKKQEERTWVLNEFKT-- 425 (545)
T ss_pred hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH------------cCCcEEEEECCCcHHHHHHHHHHHhc--
Confidence 3467777888887766788999999999999999999985 57889999999999999999999996
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
+.++ +||+|.+++.|||+.++++||+||+++++..+.|++||++|.|.+-.+ |.|++.+
T Consensus 426 -G~~~-ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 426 -GKSP-IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred -CCCc-EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 3444 589999999999999999999999999999999999999999986544 5556554
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=7.3e-20 Score=220.68 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+.++|||+.+....+.+...|.. .|+....++|+++..+|..+++.|.+ +.++ +|++|.+.|.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~------------~g~~~~~~H~~l~~~eR~~i~~~F~~---g~~~-vLVaT~~~~~ 288 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQN------------LGIAAGAYHAGLEISARDDVHHKFQR---DEIQ-VVVATVAFGM 288 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHh------------cCCCeeEeeCCCCHHHHHHHHHHHHc---CCCc-EEEEechhhc
Confidence 467789999999999999999986 58899999999999999999999996 4555 5888999999
Q ss_pred CCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 872 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 872 GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
|||+++.+.||+|++|.++..+.|++||++|.|+...+.+|
T Consensus 289 GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 289 GINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 99999999999999999999999999999999998766655
No 31
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.86 E-value=2.3e-20 Score=227.27 Aligned_cols=123 Identities=24% Similarity=0.279 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|...|.++|........++|||+......+.+...|... .|+....++|+++..+|..+++.|.+ +
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-----------~g~~~~~~Hg~~~~~eR~~il~~Fr~---G 417 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV-----------TGLKALSIHGEKSMKERREVMKSFLV---G 417 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc-----------cCcceEEeeCCCCHHHHHHHHHHHHC---C
Confidence 455666677655444568999999999999999999752 47889999999999999999999996 4
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
.++ +|++|.+++.|||+..+++||+||++.++..+.|++||++|.|..- .+|.|+..
T Consensus 418 ~~~-ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~ 474 (518)
T PLN00206 418 EVP-VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNE 474 (518)
T ss_pred CCC-EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEch
Confidence 455 5899999999999999999999999999999999999999999753 34445554
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.86 E-value=1e-19 Score=217.86 Aligned_cols=118 Identities=24% Similarity=0.352 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|..+|..++.. ....++|||+.....++.|...|.. .|+....++|.++..+|..+++.|++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~------------~~~~~~~l~g~~~~~~R~~~l~~f~~--- 293 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRK------------AGINCCYLEGEMVQAKRNEAIKRLTD--- 293 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHh------------CCCCEEEecCCCCHHHHHHHHHHHhC---
Confidence 366666666653 2467999999999999999999986 58899999999999999999999996
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
+.++ +|++|.+++.|||+.++++||+||+++++..+.|++||++|.|..-.+.++
T Consensus 294 G~~~-vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 294 GRVN-VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred CCCc-EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 4555 588999999999999999999999999999999999999999987554443
No 33
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.86 E-value=8e-20 Score=220.20 Aligned_cols=320 Identities=17% Similarity=0.192 Sum_probs=210.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.+.|+|.+++..++ .+...|+...+|.|||+..+..+...+.... ....+||+||.. |..||.+
T Consensus 26 ~~t~iQ~~ai~~~l--------------~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-~~~~~lil~PtreLa~Q~~~ 90 (460)
T PRK11776 26 EMTPIQAQSLPAIL--------------AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-FRVQALVLCPTRELADQVAK 90 (460)
T ss_pred CCCHHHHHHHHHHh--------------cCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-CCceEEEEeCCHHHHHHHHH
Confidence 36799999998774 3578999999999999876555544443221 123689999965 6779999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.... ..+++..+.+...... ....+....+|+|+|++.+..+.... .+....+++||+||
T Consensus 91 ~~~~~~~~~-~~~~v~~~~Gg~~~~~--~~~~l~~~~~IvV~Tp~rl~~~l~~~------------~~~l~~l~~lViDE 155 (460)
T PRK11776 91 EIRRLARFI-PNIKVLTLCGGVPMGP--QIDSLEHGAHIIVGTPGRILDHLRKG------------TLDLDALNTLVLDE 155 (460)
T ss_pred HHHHHHhhC-CCcEEEEEECCCChHH--HHHHhcCCCCEEEEChHHHHHHHHcC------------CccHHHCCEEEEEC
Confidence 998875321 1366666665433221 12333456789999998875432110 01112678999999
Q ss_pred CcccCCcc--cHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 541 AHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 541 aH~iKN~~--S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||++-+.. ..+...+..+ .....+++|||+-. ++-. +
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~---------------l--------------------- 195 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAA---------------I--------------------- 195 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHH---------------H---------------------
Confidence 99876432 2333444444 34457889999621 0000 0
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
...++. -| ..+.+.... .
T Consensus 196 -------------~~~~~~----------~~----~~i~~~~~~------------------~----------------- 213 (460)
T PRK11776 196 -------------SQRFQR----------DP----VEVKVESTH------------------D----------------- 213 (460)
T ss_pred -------------HHHhcC----------CC----EEEEECcCC------------------C-----------------
Confidence 000000 00 000000000 0
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
.+.+ ...+-......
T Consensus 214 -----~~~i------------------------------------------------------------~~~~~~~~~~~ 228 (460)
T PRK11776 214 -----LPAI------------------------------------------------------------EQRFYEVSPDE 228 (460)
T ss_pred -----CCCe------------------------------------------------------------eEEEEEeCcHH
Confidence 0000 00000011123
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|+..|..+|.. ..+.++|||++....++.+...|.. .|+....++|.++..+|+.+++.|++ +
T Consensus 229 k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~------------~~~~v~~~hg~~~~~eR~~~l~~F~~---g 291 (460)
T PRK11776 229 RLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNA------------QGFSALALHGDLEQRDRDQVLVRFAN---R 291 (460)
T ss_pred HHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHh------------CCCcEEEEeCCCCHHHHHHHHHHHHc---C
Confidence 67777777764 3457899999999999999999986 58899999999999999999999996 4
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
.++ +||+|.+++.|||+.++++||+||.+.++..+.|++||++|.|+.- ..|.|+..+
T Consensus 292 ~~~-vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 292 SCS-VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCc-EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 455 5889999999999999999999999999999999999999999764 345555553
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.86 E-value=4.7e-20 Score=221.65 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 001149 779 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 858 (1138)
Q Consensus 779 l~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~ 858 (1138)
..+|..++.. ....++|||+......+.|...|.. .|+....++|.++..+|..+++.|.+ +.
T Consensus 233 ~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~------------~g~~~~~lhg~~~~~~R~~~l~~F~~---g~ 295 (456)
T PRK10590 233 RELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNK------------DGIRSAAIHGNKSQGARTRALADFKS---GD 295 (456)
T ss_pred HHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHH------------CCCCEEEEECCCCHHHHHHHHHHHHc---CC
Confidence 3344444432 2357899999999999999999986 58889999999999999999999996 45
Q ss_pred ceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001149 859 VKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 859 v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
++ +||+|.+++.|||+.+.++||+||++.++..+.|++||+.|.|.+-.+.+
T Consensus 296 ~~-iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 296 IR-VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred Cc-EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 55 58899999999999999999999999999999999999999998754443
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.85 E-value=1.6e-19 Score=218.36 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
+.|...|..++.. ....++|||++....++.|...|.. .|+.+..++|.++..+|.++++.|++
T Consensus 320 ~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~------------~~~~~~~~~g~~~~~~R~~~~~~Fr~-- 383 (475)
T PRK01297 320 SDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVK------------DGINAAQLSGDVPQHKRIKTLEGFRE-- 383 (475)
T ss_pred hhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHH------------cCCCEEEEECCCCHHHHHHHHHHHhC--
Confidence 3456666666654 3457999999999999999999986 57889999999999999999999986
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
+.++ +|++|.++++|||+.+++.||+||+++++..+.|++||++|.|+.-.+
T Consensus 384 -G~~~-vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 384 -GKIR-VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred -CCCc-EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE
Confidence 4454 588999999999999999999999999999999999999999986443
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.85 E-value=1e-19 Score=216.99 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+..|..++.. ....++|||++.....+.|...|.. .|+....++|.++.++|..+++.|++
T Consensus 241 ~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~------------~g~~v~~lhg~~~~~~R~~~l~~F~~--- 303 (423)
T PRK04837 241 EKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAA------------DGHRVGLLTGDVAQKKRLRILEEFTR--- 303 (423)
T ss_pred HHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHh------------CCCcEEEecCCCChhHHHHHHHHHHc---
Confidence 467777777765 3468999999999999999999986 58899999999999999999999986
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
+.++ +|++|.+++.|||++++++||+||+|+++..+.|++||++|.|+.-. ++-|+.+
T Consensus 304 g~~~-vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 304 GDLD-ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred CCCc-EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 4555 68999999999999999999999999999999999999999997643 3445544
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=2.6e-19 Score=219.55 Aligned_cols=121 Identities=21% Similarity=0.349 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+..|..++.. ..+.++|||++....++.|.+.|.. .|+....++|.++..+|..+++.|++
T Consensus 243 ~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~------------~g~~v~~lhg~l~~~eR~~il~~Fr~--- 305 (572)
T PRK04537 243 EKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLER------------HGYRVGVLSGDVPQKKRESLLNRFQK--- 305 (572)
T ss_pred HHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHH------------cCCCEEEEeCCCCHHHHHHHHHHHHc---
Confidence 356666666654 3578999999999999999999986 58899999999999999999999986
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
+.++ +||+|.+++.|||+.+.++||+||.+|++..+.|++||+.|.|..-.+. .|+..
T Consensus 306 G~~~-VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~~ 363 (572)
T PRK04537 306 GQLE-ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFACE 363 (572)
T ss_pred CCCe-EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEecH
Confidence 4454 5899999999999999999999999999999999999999999875443 34443
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.84 E-value=8.4e-19 Score=217.14 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=97.2
Q ss_pred HHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceE
Q 001149 782 LLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKC 861 (1138)
Q Consensus 782 L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v 861 (1138)
+..++.. ..+.++|||+.+....+.+...|.. .|+....++|+++.++|..+++.|.. +.++
T Consensus 227 l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~------------~g~~v~~~Ha~l~~~~R~~i~~~F~~---g~~~- 288 (607)
T PRK11057 227 LMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQS------------RGISAAAYHAGLDNDVRADVQEAFQR---DDLQ- 288 (607)
T ss_pred HHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHh------------CCCCEEEecCCCCHHHHHHHHHHHHC---CCCC-
Confidence 3444433 3578999999999999999999986 58899999999999999999999986 3454
Q ss_pred EEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001149 862 TLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 862 ~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
+|++|.+.|.|||+++.+.||+||+|.++..+.|++||++|.|....+.+
T Consensus 289 VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 58899999999999999999999999999999999999999997755443
No 39
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=2.2e-19 Score=231.45 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=90.3
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
+.|+|||+....+++.+.+.|...+.... +. ..+..+..++|+++ +++.++++|.++.. ..+|+|+...++|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~-~~--~~~~~v~~itg~~~--~~~~li~~Fk~~~~---p~IlVsvdmL~TG 769 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKY-GQ--VEDDAVIKITGSID--KPDQLIRRFKNERL---PNIVVTVDLLTTG 769 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhc-CC--cCccceEEEeCCcc--chHHHHHHHhCCCC---CeEEEEecccccC
Confidence 47999999999999988888876321100 00 01234567999986 67889999987432 3479999999999
Q ss_pred CCcccCCEEEEEcCCCCcchHHHHHHHHHhhCC---CCcEEEEEEe
Q 001149 873 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQ---TKPVFAYRLM 915 (1138)
Q Consensus 873 LNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ---~k~V~VyrLv 915 (1138)
+|.+....||++.|.-++....|++||+-|.-- +....||.++
T Consensus 770 ~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 770 IDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred CCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 999999999999999999999999999999854 5567788765
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.84 E-value=3.4e-19 Score=211.18 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=95.3
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
..++|||+.....++.+...|.. .|+....++|.++..+|..+++.|++ +.++ +|++|.+.++|
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~------------~~~~~~~~h~~~~~~~R~~i~~~f~~---g~~~-vLvaT~~l~~G 330 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHE------------RDFTVSCMHGDMDQKDRDLIMREFRS---GSTR-VLITTDLLARG 330 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHH------------CCCcEEEEeCCCCHHHHHHHHHHHHc---CCCC-EEEEcccccCC
Confidence 46899999999999999999986 57889999999999999999999996 4555 58999999999
Q ss_pred CCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 873 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 873 LNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
||++.++.||+||++.++..+.|++||++|.|.. -.+|.|+...
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 9999999999999999999999999999999865 3455566554
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.83 E-value=7e-19 Score=218.13 Aligned_cols=116 Identities=23% Similarity=0.212 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
+...+.+.|... .+.+.|||+.+....+.+...|.. .|+.+..++|+++.++|..+++.|.. +
T Consensus 211 ~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~------------~g~~~~~~H~~l~~~~R~~i~~~F~~---g 273 (591)
T TIGR01389 211 KQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLES------------QGISALAYHAGLSNKVRAENQEDFLY---D 273 (591)
T ss_pred HHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHh------------CCCCEEEEECCCCHHHHHHHHHHHHc---C
Confidence 344555666542 378999999999999999999986 58889999999999999999999986 3
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
.+. +|++|.+.|.|||+++++.||+|++++|+..+.|++||++|.|+...+.+
T Consensus 274 ~~~-vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 274 DVK-VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred CCc-EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 444 68999999999999999999999999999999999999999997755543
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.83 E-value=3.5e-18 Score=212.52 Aligned_cols=311 Identities=16% Similarity=0.216 Sum_probs=197.1
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~ 459 (1138)
-.|.++|..++..++.... .....+.+|..++|+|||+.++..+...+.. ...+||++|.. |..||.
T Consensus 234 f~lt~~Q~~ai~~I~~~~~--------~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLK--------SDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILAEQHY 301 (630)
T ss_pred CCCCHHHHHHHHHHHHHhc--------cCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHHHHHH
Confidence 3689999999988765321 1234568999999999999877655554433 34799999976 556999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHh-hcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~-~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
+++.+|++. ..+++..+.+... ..+...+.... ...+|+|.|+..+... ..-...++||
T Consensus 302 ~~~~~l~~~--~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-----------------~~~~~l~lvV 362 (630)
T TIGR00643 302 NSLRNLLAP--LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-----------------VEFKRLALVI 362 (630)
T ss_pred HHHHHHhcc--cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-----------------ccccccceEE
Confidence 999999864 1367777776543 33333333332 2358999988765420 0012578999
Q ss_pred EcCCcccCCcccHHHHHHHhcc---cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCCh
Q 001149 538 CDEAHMIKNTRADTTQALKQVK---CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 614 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l~---~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~ 614 (1138)
+||+|++.- .+......... ..+.++|||||+...+. +..+ +.. +
T Consensus 363 IDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~------~~l-----------------~--- 410 (630)
T TIGR00643 363 IDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY------GDL-----------------D--- 410 (630)
T ss_pred EechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc------CCc-----------------c---
Confidence 999999732 22223333333 57899999999753221 0000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCe--EEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHH
Q 001149 615 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT--VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFA 692 (1138)
Q Consensus 615 ~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~--e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~ 692 (1138)
. .....+|+.. .....+.-.
T Consensus 411 -------------------------~-~~i~~~p~~r~~i~~~~~~~~-------------------------------- 432 (630)
T TIGR00643 411 -------------------------T-SIIDELPPGRKPITTVLIKHD-------------------------------- 432 (630)
T ss_pred -------------------------e-eeeccCCCCCCceEEEEeCcc--------------------------------
Confidence 0 0000122110 000000000
Q ss_pred HHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccc
Q 001149 693 GYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE 772 (1138)
Q Consensus 693 ~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 772 (1138)
T Consensus 433 -------------------------------------------------------------------------------- 432 (630)
T TIGR00643 433 -------------------------------------------------------------------------------- 432 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCc--------chHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHH
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSI--------PTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSER 844 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~--------~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR 844 (1138)
+...+.+.+......+.+++||+... ..+..+.+.|... ..++.+..++|.++.++|
T Consensus 433 -----~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~----------~~~~~v~~lHG~m~~~eR 497 (630)
T TIGR00643 433 -----EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA----------FPKYNVGLLHGRMKSDEK 497 (630)
T ss_pred -----hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------CCCCcEEEEeCCCCHHHH
Confidence 00122223333334567777777654 2334455555531 146789999999999999
Q ss_pred HHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCcEEE
Q 001149 845 QKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 845 ~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-NP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
..++++|.+ +.++ +|++|.+.++|||+++++.||+++++. +-+...|++||++|.|..-.|++
T Consensus 498 ~~i~~~F~~---g~~~-ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 498 EAVMEEFRE---GEVD-ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred HHHHHHHHc---CCCC-EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 999999996 3444 588999999999999999999999975 67889999999999987655543
No 43
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.82 E-value=2.5e-18 Score=212.27 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|...|..+|.. ....++|||+......+.|...|.. .|+....++|.++..+|..++++|++
T Consensus 231 ~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~------------~g~~~~~lhgd~~q~~R~~il~~Fr~--- 293 (629)
T PRK11634 231 RKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALER------------NGYNSAALNGDMNQALREQTLERLKD--- 293 (629)
T ss_pred hHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHh------------CCCCEEEeeCCCCHHHHHHHHHHHhC---
Confidence 467777777764 2357899999999999999999986 58899999999999999999999996
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
+.++ +||+|.+.+.|||+...++||+||++.++..+.|++||+.|.|..-.+.+
T Consensus 294 G~~~-ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 294 GRLD-ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CCCC-EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 4454 68999999999999999999999999999999999999999997644333
No 44
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.81 E-value=8.4e-18 Score=211.43 Aligned_cols=348 Identities=14% Similarity=0.134 Sum_probs=215.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.|+|||.+++..+. .|.+.|+...+|+|||+..+.-+...+... ...++|||+|.. |..|-..
T Consensus 36 ~p~~~Q~~ai~~il--------------~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 36 RPWQHQARAAELAH--------------AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQLR 99 (742)
T ss_pred cCCHHHHHHHHHHH--------------CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHHH
Confidence 58999999998763 467899999999999988766555444332 234799999965 5668888
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.. ..+++..++|......... .....+|+|+|++++.........+ ...+ -.+.++||+||
T Consensus 100 ~l~~l~~---~~i~v~~~~Gdt~~~~r~~---i~~~~~IivtTPd~L~~~~L~~~~~-------~~~~-l~~l~~vViDE 165 (742)
T TIGR03817 100 AVRELTL---RGVRPATYDGDTPTEERRW---AREHARYVLTNPDMLHRGILPSHAR-------WARF-LRRLRYVVIDE 165 (742)
T ss_pred HHHHhcc---CCeEEEEEeCCCCHHHHHH---HhcCCCEEEEChHHHHHhhccchhH-------HHHH-HhcCCEEEEeC
Confidence 8888862 2367777777654332222 2245789999999875321111110 1111 23678999999
Q ss_pred CcccCC-cccHHHHHHHhc--------ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 001149 541 AHMIKN-TRADTTQALKQV--------KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 611 (1138)
Q Consensus 541 aH~iKN-~~S~~skal~~l--------~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~ 611 (1138)
||.+.+ ..+.....+..+ .....+++|||. +++.++. ..+ +..|+.
T Consensus 166 ah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~---~~l--------------~g~~~~------ 220 (742)
T TIGR03817 166 CHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAA---SRL--------------IGAPVV------ 220 (742)
T ss_pred hhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHH---HHH--------------cCCCeE------
Confidence 999875 334445555444 235689999994 2333321 111 011100
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh-cCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 001149 612 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 690 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~-~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~ 690 (1138)
.+.. ..|.....+....... +. . ....
T Consensus 221 ------------------------------~i~~~~~~~~~~~~~~~~p~~-----~~-~------~~~~---------- 248 (742)
T TIGR03817 221 ------------------------------AVTEDGSPRGARTVALWEPPL-----TE-L------TGEN---------- 248 (742)
T ss_pred ------------------------------EECCCCCCcCceEEEEecCCc-----cc-c------cccc----------
Confidence 0000 0111111111100000 00 0 0000
Q ss_pred HHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccc
Q 001149 691 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 770 (1138)
Q Consensus 691 l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 770 (1138)
+.. .
T Consensus 249 -----------------------~~~-----------------------------------------------------~ 252 (742)
T TIGR03817 249 -----------------------GAP-----------------------------------------------------V 252 (742)
T ss_pred -----------------------ccc-----------------------------------------------------c
Confidence 000 0
Q ss_pred cccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHH
Q 001149 771 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVER 850 (1138)
Q Consensus 771 ~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~ 850 (1138)
.......|..+|.+++. .+.++|||+++....+.|..+|....... ....+..+..++|+++.++|.++.++
T Consensus 253 r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~----~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 253 RRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEV----DPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhh----ccccccchhheecCCCHHHHHHHHHH
Confidence 00000124444555554 47899999999999999999887521000 00124567788999999999999999
Q ss_pred HcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHH
Q 001149 851 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 926 (1138)
Q Consensus 851 Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~ 926 (1138)
|.+ +.++ +|++|.+.+.|||+.+.+.||+|+.|-+...+.|++||++|.|+.-- ++-++..+..|..+..
T Consensus 325 f~~---G~i~-vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 325 LRD---GELL-GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred HHc---CCce-EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 996 5565 58999999999999999999999999999999999999999997643 3444555556655443
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.80 E-value=8.6e-18 Score=210.39 Aligned_cols=310 Identities=16% Similarity=0.216 Sum_probs=200.0
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~ 459 (1138)
-.|.++|..++.-+..... .......+|..++|+|||+.++..+...... ...+||++|.. |..|+.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~--------~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 260 FELTGAQKRVVAEILADLA--------SPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILAEQHY 327 (681)
T ss_pred CCCCHHHHHHHHHHHHhhh--------ccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHHHHHH
Confidence 3589999999987765321 1233578999999999999887766555433 34799999976 556999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHhh-cCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~-~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
+.+.+|++. ..+++..+++... ..+...+..+.. ..+|+|.|+..+... ..-...++||
T Consensus 328 ~~l~~l~~~--~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-----------------v~~~~l~lvV 388 (681)
T PRK10917 328 ENLKKLLEP--LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD-----------------VEFHNLGLVI 388 (681)
T ss_pred HHHHHHHhh--cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc-----------------chhcccceEE
Confidence 999999865 2367777776543 445555555543 468999888765421 0012678999
Q ss_pred EcCCcccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 001149 538 CDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 616 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~ 616 (1138)
+||+|++. ......+... ...+.++|||||+...+. +..+ +..
T Consensus 389 IDE~Hrfg---~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~------g~~----------------------- 432 (681)
T PRK10917 389 IDEQHRFG---VEQRLALREKGENPHVLVMTATPIPRTLA----MTAY------GDL----------------------- 432 (681)
T ss_pred Eechhhhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHc------CCC-----------------------
Confidence 99999972 2233334333 357899999999642210 0000 000
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCe--EEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHH
Q 001149 617 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT--VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY 694 (1138)
Q Consensus 617 ~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~--e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l 694 (1138)
....+ ..+|+.. .....+
T Consensus 433 ----------------------~~s~i-~~~p~~r~~i~~~~~------------------------------------- 452 (681)
T PRK10917 433 ----------------------DVSVI-DELPPGRKPITTVVI------------------------------------- 452 (681)
T ss_pred ----------------------ceEEE-ecCCCCCCCcEEEEe-------------------------------------
Confidence 00000 0111100 000000
Q ss_pred HHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccC
Q 001149 695 QALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 774 (1138)
Q Consensus 695 ~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 774 (1138)
T Consensus 453 -------------------------------------------------------------------------------- 452 (681)
T PRK10917 453 -------------------------------------------------------------------------------- 452 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcc--------hHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHH
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIP--------TLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQK 846 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~--------~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~ 846 (1138)
...+...+.+.+......|++++||+.... .+..+.+.|... ..++.+..++|.++..+|+.
T Consensus 453 ~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~----------~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 453 PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA----------FPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH----------CCCCcEEEEeCCCCHHHHHH
Confidence 001112223334433456888999987542 234445555541 12478999999999999999
Q ss_pred HHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCcEEE
Q 001149 847 LVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 847 ~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-NP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
++++|.+ +.++ +|++|.+.++|+|+++++.||+++++. ..+...|++||++|.|..-.|++
T Consensus 523 i~~~F~~---g~~~-ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 584 (681)
T PRK10917 523 VMAAFKA---GEID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVL 584 (681)
T ss_pred HHHHHHc---CCCC-EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEE
Confidence 9999996 4444 589999999999999999999999975 56889999999999987644433
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.80 E-value=6.5e-18 Score=214.42 Aligned_cols=311 Identities=15% Similarity=0.240 Sum_probs=203.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.+.|+|..++..+...+. ...+...++..++|.|||..++..+...... .+.++|+||.. |..|..+
T Consensus 451 ~~T~~Q~~aI~~I~~d~~--------~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~~LA~Q~~~ 518 (926)
T TIGR00580 451 EETPDQLKAIEEIKADME--------SPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTTLLAQQHFE 518 (926)
T ss_pred CCCHHHHHHHHHHHhhhc--------ccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcHHHHHHHHH
Confidence 468999999988765321 1234578999999999999877655544433 25899999976 5568999
Q ss_pred HHHHHCCCCCCCeEEEEecCcc-hhHHHHHHHHHhh-cCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~-~~~r~~~l~~~~~-~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
.|.+++.. .++++..+++.. ...+...+..+.. ..+|+|.|+..+.. . ..-....+||+
T Consensus 519 ~f~~~~~~--~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~-----~------------v~f~~L~llVI 579 (926)
T TIGR00580 519 TFKERFAN--FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQK-----D------------VKFKDLGLLII 579 (926)
T ss_pred HHHHHhcc--CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhC-----C------------CCcccCCEEEe
Confidence 99988764 246676666543 3344444444433 45788888754321 0 01125689999
Q ss_pred cCCcccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 539 DEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||+|++. ......++.+ .....++|||||+...+.. ++..+..+
T Consensus 580 DEahrfg---v~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~------------------------------ 624 (926)
T TIGR00580 580 DEEQRFG---VKQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDL------------------------------ 624 (926)
T ss_pred ecccccc---hhHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCc------------------------------
Confidence 9999973 2334455555 4567899999997532210 00000000
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEE---EecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI---TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY 694 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv---~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l 694 (1138)
..+ ..||.....+ .+..+
T Consensus 625 -----------------------s~I--~~~p~~R~~V~t~v~~~~---------------------------------- 645 (926)
T TIGR00580 625 -----------------------SII--ATPPEDRLPVRTFVMEYD---------------------------------- 645 (926)
T ss_pred -----------------------EEE--ecCCCCccceEEEEEecC----------------------------------
Confidence 000 0111100000 00000
Q ss_pred HHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccC
Q 001149 695 QALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 774 (1138)
Q Consensus 695 ~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 774 (1138)
T Consensus 646 -------------------------------------------------------------------------------- 645 (926)
T TIGR00580 646 -------------------------------------------------------------------------------- 645 (926)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
. ..+.+.+......+.+++||++....++.+.+.|..+. .++++..++|.++..+|.+++.+|.+
T Consensus 646 --~--~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~----------p~~~v~~lHG~m~~~eRe~im~~F~~- 710 (926)
T TIGR00580 646 --P--ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV----------PEARIAIAHGQMTENELEEVMLEFYK- 710 (926)
T ss_pred --H--HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC----------CCCeEEEecCCCCHHHHHHHHHHHHc-
Confidence 0 00111111112347899999999999999999998631 46889999999999999999999996
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGS-WNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~-WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
++++ +|++|.+.+.|||++.++.||+++++ +..+...|++||++|.|.. =++|-|+..
T Consensus 711 --Gk~~-ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 --GEFQ-VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred --CCCC-EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 4454 68999999999999999999999985 4567889999999998865 445555544
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.79 E-value=2.6e-17 Score=205.87 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=94.9
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
+...|||+.+....+.+..+|.. .|+....++|+++..+|..++++|.. +.++ +|++|.|.|.|
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~------------~Gika~~YHAGLs~eeR~~vqe~F~~---Gei~-VLVATdAFGMG 743 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQE------------FGHKAAFYHGSMDPAQRAFVQKQWSK---DEIN-IICATVAFGMG 743 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHH------------CCCCeeeeeCCCCHHHHHHHHHHHhc---CCCc-EEEEechhhcC
Confidence 56789999999999999999986 68999999999999999999999996 4455 58889999999
Q ss_pred CCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEE
Q 001149 873 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYR 913 (1138)
Q Consensus 873 LNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vyr 913 (1138)
||+...+.||+|++|-++..+.|++||++|.|+.-.+..|+
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999986665553
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.78 E-value=2.8e-17 Score=210.67 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=96.3
Q ss_pred HHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEE
Q 001149 784 DILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTL 863 (1138)
Q Consensus 784 eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~L 863 (1138)
..|..+...+.++|||++.....+.+...|...... +..+..+..++|+++.++|..+.++|++ +.++ +|
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~------~~~~~~i~~hHg~ls~~~R~~ve~~fk~---G~i~-vL 344 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE------EYDEDNIGAHHSSLSREVRLEVEEKLKR---GELK-VV 344 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh------hccccceeeeeCCCCHHHHHHHHHHHHc---CCCe-EE
Confidence 334444445789999999999999999998763210 0134678889999999999999999996 4555 58
Q ss_pred eeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhh-CCCCcEEEEE
Q 001149 864 ISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY-GQTKPVFAYR 913 (1138)
Q Consensus 864 iSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~Ri-GQ~k~V~Vyr 913 (1138)
++|.+.+.|||+.+.+.||+++++.+...+.|++||++|. |+...-.++-
T Consensus 345 VaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 345 VSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred EECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 8999999999999999999999999999999999999976 4544444543
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.78 E-value=2.9e-17 Score=212.76 Aligned_cols=309 Identities=17% Similarity=0.249 Sum_probs=200.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchH-HHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll-~qW~~ 460 (1138)
.+.|.|.+++.-+..... ...+...++..++|.|||.+++-.+...... .+.+||+||...+ .|..+
T Consensus 600 ~~T~~Q~~aI~~il~d~~--------~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~----g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMC--------QPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN----HKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred CCCHHHHHHHHHHHHHhh--------cCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHH
Confidence 578899999987654321 1345678999999999999876444333322 3589999998755 68888
Q ss_pred HHHHHCCCCCCCeEEEEecCc-chhHHHHHHHHHh-hcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~-~~~~r~~~l~~~~-~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
.|.+++.. .++++..+.+. +...+...+.... ...+|+|.|+..+... + .-...++||+
T Consensus 668 ~f~~~~~~--~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~-----v------------~~~~L~lLVI 728 (1147)
T PRK10689 668 NFRDRFAN--WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD-----V------------KWKDLGLLIV 728 (1147)
T ss_pred HHHHhhcc--CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC-----C------------CHhhCCEEEE
Confidence 88887654 13566555543 3334444444332 3458999998765310 0 0125789999
Q ss_pred cCCcccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 539 DEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||+|++.. .....++.+ .....+++||||+...+.- + +.++. +|
T Consensus 729 DEahrfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l--~-~~gl~---------------d~-------------- 773 (1147)
T PRK10689 729 DEEHRFGV---RHKERIKAMRADVDILTLTATPIPRTLNM--A-MSGMR---------------DL-------------- 773 (1147)
T ss_pred echhhcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH--H-HhhCC---------------Cc--------------
Confidence 99999832 233445555 4568899999997643210 0 00000 00
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEE---EEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF---VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY 694 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~---vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l 694 (1138)
..+ ..|+.... .+.....
T Consensus 774 -----------------------~~I--~~~p~~r~~v~~~~~~~~---------------------------------- 794 (1147)
T PRK10689 774 -----------------------SII--ATPPARRLAVKTFVREYD---------------------------------- 794 (1147)
T ss_pred -----------------------EEE--ecCCCCCCCceEEEEecC----------------------------------
Confidence 000 00111000 0000000
Q ss_pred HHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccC
Q 001149 695 QALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 774 (1138)
Q Consensus 695 ~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 774 (1138)
T Consensus 795 -------------------------------------------------------------------------------- 794 (1147)
T PRK10689 795 -------------------------------------------------------------------------------- 794 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
.......++.++. .+.+++||++....++.+.+.|.++ ..++.+..++|.++..+|.+++.+|.+
T Consensus 795 ---~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~----------~p~~~v~~lHG~m~q~eRe~im~~Fr~- 859 (1147)
T PRK10689 795 ---SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAEL----------VPEARIAIGHGQMRERELERVMNDFHH- 859 (1147)
T ss_pred ---cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHh----------CCCCcEEEEeCCCCHHHHHHHHHHHHh-
Confidence 0000112222222 3678999999999999999999873 146788999999999999999999996
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCcEEEEEEe
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGS-WNPTYDLQAIYRAWRYGQTKPVFAYRLM 915 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~-WNP~~~~QAigR~~RiGQ~k~V~VyrLv 915 (1138)
++++ +|++|.+.+.|||++++++||+.+++ ++.+.+.|++||++|.|.+- ++|-+.
T Consensus 860 --Gk~~-VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 860 --QRFN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred --cCCC-EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 4555 58899999999999999999998774 67788999999999998764 444344
No 50
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.3e-16 Score=186.67 Aligned_cols=118 Identities=24% Similarity=0.275 Sum_probs=105.7
Q ss_pred CchHHHHHHHHHHhh-cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 776 SGKMVLLLDILTMCS-NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~-~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
.+|...|..+|.... ..+.|+|||++.....+.|+..|+. .|++..-|||..++.+|...++.|.++
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~------------~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR------------KGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh------------cCcceeeecccccHHHHHHHHHhcccC
Confidence 568888888888876 4567999999999999999999986 578999999999999999999999974
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
+.. +|++|.+++.||++.+.+.||.||+|-|...+++|+||.+|.|++-..
T Consensus 391 ---~~~-vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 391 ---KSP-VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred ---Ccc-eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 332 699999999999999999999999999999999999999998887443
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.74 E-value=3.4e-16 Score=198.61 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=105.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.|+|+|.+++.-++ ..+.+++++..+|.|||+.+...+...+.. .+++|+|+|. .|+.|+.+
T Consensus 23 ~l~p~Q~~ai~~~~-------------~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 23 ELYPPQAEAVEAGL-------------LDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALASEKFE 85 (737)
T ss_pred cCCHHHHHHHHHHH-------------hCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHH
Confidence 58999999997543 246799999999999999886555444332 3589999995 58889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
+|.++.+. .+++..+.+..... ..+....+|+|+|++.+..+.... . . .....++||+||
T Consensus 86 ~~~~~~~~---g~~v~~~tGd~~~~-----~~~l~~~~IiV~Tpek~~~llr~~----~-------~-~l~~v~lvViDE 145 (737)
T PRK02362 86 EFERFEEL---GVRVGISTGDYDSR-----DEWLGDNDIIVATSEKVDSLLRNG----A-------P-WLDDITCVVVDE 145 (737)
T ss_pred HHHHhhcC---CCEEEEEeCCcCcc-----ccccCCCCEEEECHHHHHHHHhcC----h-------h-hhhhcCEEEEEC
Confidence 99987542 25666666543221 123356789999999876543210 0 0 112678999999
Q ss_pred CcccCCcc--cHHHHHHHhc----ccCeEEEEecCCCCCChhHHH
Q 001149 541 AHMIKNTR--ADTTQALKQV----KCQRRIALTGSPLQNNLMEYY 579 (1138)
Q Consensus 541 aH~iKN~~--S~~skal~~l----~~~~RllLTGTPlqNnl~El~ 579 (1138)
+|.+-+.. ......+..+ ...+.++||||+- |..++.
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la 188 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELA 188 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHH
Confidence 99996532 2222223333 3457899999973 455544
No 52
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=3e-16 Score=172.66 Aligned_cols=129 Identities=20% Similarity=0.280 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|-..|+.||++. .|..+||||..-.+.+.+.-+|+. .|+....++|.+++..|...++.|++.
T Consensus 287 K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~------------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~--- 349 (476)
T KOG0330|consen 287 KDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRN------------LGFQAIPLHGQMSQSKRLGALNKFKAG--- 349 (476)
T ss_pred cchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHh------------cCcceecccchhhHHHHHHHHHHHhcc---
Confidence 556788888874 468999999999999999999997 589999999999999999999999973
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHH
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 928 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq 928 (1138)
.. -+|++|++++.||+.+.++.||.||.|-+-..+++|+||+.|.| +.-.+..||+. .|-..|+|.
T Consensus 350 ~r-~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 350 AR-SILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred CC-cEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 22 36999999999999999999999999999999999999999999 66677888888 444455443
No 53
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.73 E-value=1.6e-15 Score=189.20 Aligned_cols=167 Identities=20% Similarity=0.244 Sum_probs=108.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHH
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 458 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW 458 (1138)
....++||..||..+.+.+... ..+....+|++.|.+|+|||++++.++..++... ...++|||||. .|+.||
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~----~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~--~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRK----TWGKDERGGLIWHTQGSGKTLTMLFAARKALELL--KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhc----ccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc--CCCeEEEEECcHHHHHHH
Confidence 3447999999999887765431 1112346899999999999999999988876543 35689999995 588899
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCC-CEEE
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILV 537 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~-dlVI 537 (1138)
.++|..+.+... ... + +...-...+. ....+|+|+|+..|.... ............ .+||
T Consensus 310 ~~~f~~~~~~~~-----~~~-~-s~~~L~~~l~--~~~~~iivtTiQk~~~~~----------~~~~~~~~~~~~~~lvI 370 (667)
T TIGR00348 310 MKEFQSLQKDCA-----ERI-E-SIAELKRLLE--KDDGGIIITTIQKFDKKL----------KEEEEKFPVDRKEVVVI 370 (667)
T ss_pred HHHHHhhCCCCC-----ccc-C-CHHHHHHHHh--CCCCCEEEEEhHHhhhhH----------hhhhhccCCCCCCEEEE
Confidence 999999875311 111 1 1111111111 134689999999986410 000111111122 3899
Q ss_pred EcCCcccCCcccHHHHHHH-hcccCeEEEEecCCCCC
Q 001149 538 CDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQN 573 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~-~l~~~~RllLTGTPlqN 573 (1138)
+||||+... ....+.++ .+....+++|||||+..
T Consensus 371 vDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 371 FDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred EEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 999998632 23445554 56778999999999853
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.71 E-value=3.1e-15 Score=174.66 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHH----HHHHcC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL----VERFNE 853 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~----i~~Fn~ 853 (1138)
|...+..++... ..+.++|||++.....+.+...|.... .+..+..++|.++..+|.+. ++.|.+
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~----------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~ 276 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENA----------PEEEIMLLHSRFTEKDRAKKEAELLEEMKK 276 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhc----------CCCeEEEEECCCCHHHHHHHHHHHHHHhcC
Confidence 344455555433 357899999999999999999998621 12368999999999999764 888986
Q ss_pred CCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCC----cEEEEEEecCC---CHHHHHHH
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK----PVFAYRLMAHG---TMEEKIYK 926 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k----~V~VyrLv~~g---TiEekI~~ 926 (1138)
+..+ +|++|.+.+.|||+ .++.||.++.+ +....|++||++|.|... .|+||.....+ ..+.++++
T Consensus 277 ---~~~~-ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 349 (358)
T TIGR01587 277 ---NEKF-VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVE 349 (358)
T ss_pred ---CCCe-EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHH
Confidence 3333 69999999999999 58899888765 788999999999999763 57777766555 34444444
Q ss_pred H
Q 001149 927 R 927 (1138)
Q Consensus 927 r 927 (1138)
+
T Consensus 350 ~ 350 (358)
T TIGR01587 350 R 350 (358)
T ss_pred H
Confidence 4
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.71 E-value=1.2e-15 Score=192.34 Aligned_cols=119 Identities=20% Similarity=0.132 Sum_probs=84.9
Q ss_pred HHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCc-------ccc------cCCceEEEEeCCCCHHHHHHHHHHH
Q 001149 785 ILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-------KLW------KKGKDWYRLDGRTESSERQKLVERF 851 (1138)
Q Consensus 785 iL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~-------~~~------~~Gi~~~rldGsts~~eR~~~i~~F 851 (1138)
++......+.++|||+........+...|.......... ... .-...+..++|+++.++|..+.+.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 344434567899999999988877777776431100000 000 0012356689999999999999999
Q ss_pred cCCCCCCceEEEeeccccccCCCcccCCEEEEEcC---------CCCcchHHHHHHHHHhhCCCCc
Q 001149 852 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG---------SWNPTYDLQAIYRAWRYGQTKP 908 (1138)
Q Consensus 852 n~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~---------~WNP~~~~QAigR~~RiGQ~k~ 908 (1138)
++ +.++ +|++|.+.+.|+|+++ .+||++|. ++++....|++||++|.|....
T Consensus 308 ~~---g~i~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 308 RN---RYIK-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred Hc---CCCe-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 96 4565 5889999999999985 68888775 3466678899999999997655
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.69 E-value=4.3e-15 Score=188.17 Aligned_cols=160 Identities=20% Similarity=0.223 Sum_probs=106.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHH-HHHHHhcccCCCceEEEeCc-chHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-YTAMRSVNLGLRTALIVTPV-NVLHNW 458 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i-~~l~~~~~~~~k~vLIV~P~-sll~qW 458 (1138)
..|+|+|.+++.-.+ ..+.+.|++..+|.|||+.+...+ ..+... .+++|+|+|. .++.|+
T Consensus 22 ~~l~~~Q~~ai~~~~-------------~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----~~~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 22 EELYPPQAEALKSGV-------------LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----GGKAVYLVPLKALAEEK 84 (720)
T ss_pred CCCCHHHHHHHHHHH-------------hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----CCeEEEEeChHHHHHHH
Confidence 458999999996322 246789999999999999884444 333322 3589999995 577899
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
.++|.+|... .++|..+.+..... ..|....+|+|+|++.+..+..... .+ ....++||+
T Consensus 85 ~~~~~~~~~~---g~~v~~~~Gd~~~~-----~~~~~~~~IiV~Tpe~~~~ll~~~~-----------~~-l~~l~lvVi 144 (720)
T PRK00254 85 YREFKDWEKL---GLRVAMTTGDYDST-----DEWLGKYDIIIATAEKFDSLLRHGS-----------SW-IKDVKLVVA 144 (720)
T ss_pred HHHHHHHhhc---CCEEEEEeCCCCCc-----hhhhccCCEEEEcHHHHHHHHhCCc-----------hh-hhcCCEEEE
Confidence 9999887532 36676666643322 1244567899999998765421110 01 136789999
Q ss_pred cCCcccCC--cccHHHHHHHhc-ccCeEEEEecCCCCCChhHHH
Q 001149 539 DEAHMIKN--TRADTTQALKQV-KCQRRIALTGSPLQNNLMEYY 579 (1138)
Q Consensus 539 DEaH~iKN--~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~ 579 (1138)
||+|.+.. ........+..+ ...+.++||||+- |..++.
T Consensus 145 DE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la 186 (720)
T PRK00254 145 DEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELA 186 (720)
T ss_pred cCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHH
Confidence 99999854 334444455555 4567899999972 345543
No 57
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.2e-14 Score=176.37 Aligned_cols=133 Identities=24% Similarity=0.336 Sum_probs=111.0
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+.+|..++.... ..++|||+......+.|...|.. .|+....|+|++++.+|.+.++.|++
T Consensus 259 ~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~------------~g~~~~~lhG~l~q~~R~~~l~~F~~--- 321 (513)
T COG0513 259 EKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRK------------RGFKVAALHGDLPQEERDRALEKFKD--- 321 (513)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHH------------CCCeEEEecCCCCHHHHHHHHHHHHc---
Confidence 48888888888643 34799999999999999999997 68999999999999999999999995
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHH
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVT 930 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~ 930 (1138)
+.++ +|+.|++++.||++.+.++||.||.+.++..+.+|+||.+|.|.+ =..+.|++. .-|...+.+...
T Consensus 322 g~~~-vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 322 GELR-VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred CCCC-EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEEeCc-HHHHHHHHHHHH
Confidence 4555 589999999999999999999999999999999999999999944 245556665 224444444333
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.67 E-value=1.4e-14 Score=177.70 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=99.5
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
...|+.++.+.+.+....+..+|||+.+....+.+...|.. .|+.+..++|.+...+|..+..+|+.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~------------~gi~~~~L~a~~~~~E~~ii~~ag~~- 472 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR------------EGIPHNLLNAQNAAKEAQIIAEAGQK- 472 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH------------CCCCEEEecCCChHHHHHHHHHcCCC-
Confidence 35699999999998888899999999999999999999987 68999999999998777666666654
Q ss_pred CCCCceEEEeeccccccCCCcc---------cCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 855 LNKRVKCTLISTRAGSLGINLH---------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt---------~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
+. ++|+|..+|.|+++. +.+.||.++++-+. .+.|++||++|.|..-.+
T Consensus 473 --g~---VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 473 --GA---VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred --Ce---EEEEccccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeE
Confidence 32 589999999999999 78999999999665 559999999999987443
No 59
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.67 E-value=1.2e-15 Score=182.89 Aligned_cols=378 Identities=17% Similarity=0.163 Sum_probs=225.4
Q ss_pred CccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEE
Q 001149 370 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 449 (1138)
Q Consensus 370 ~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV 449 (1138)
.+..+.|......+|+||..+|+...+.+. +.....+|++.+|.|||.+||+++..+++++. .|++|.+
T Consensus 153 ~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~---------~g~~raLlvMATGTGKTrTAiaii~rL~r~~~--~KRVLFL 221 (875)
T COG4096 153 QQLAYIDIDSAIGPRYYQIIAIRRVIEAFS---------KGQNRALLVMATGTGKTRTAIAIIDRLIKSGW--VKRVLFL 221 (875)
T ss_pred cccccCcccccccchHHHHHHHHHHHHHHh---------cCCceEEEEEecCCCcceeHHHHHHHHHhcch--hheeeEE
Confidence 566778888888999999999999887764 23455999999999999999999999999876 6799999
Q ss_pred eC-cchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhh
Q 001149 450 TP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 528 (1138)
Q Consensus 450 ~P-~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~ 528 (1138)
+= .+|+.|=..+|..|.|.+-. .+.. .+... .....|++.+|.++........ .....+
T Consensus 222 aDR~~Lv~QA~~af~~~~P~~~~-~n~i--~~~~~----------~~s~~i~lsTyqt~~~~~~~~~-------~~~~~f 281 (875)
T COG4096 222 ADRNALVDQAYGAFEDFLPFGTK-MNKI--EDKKG----------DTSSEIYLSTYQTMTGRIEQKE-------DEYRRF 281 (875)
T ss_pred echHHHHHHHHHHHHHhCCCccc-eeee--ecccC----------CcceeEEEeehHHHHhhhhccc-------cccccC
Confidence 96 67889999999999998522 1111 11110 0145799999999864322221 111122
Q ss_pred hccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCC
Q 001149 529 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQ 608 (1138)
Q Consensus 529 l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~ 608 (1138)
-...||+||+||||+= ...-++.+...-...+++|||||-..--.+ +..-|. ..|+....
T Consensus 282 ~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~~~d~~--------------T~~~F~---g~Pt~~Ys 341 (875)
T COG4096 282 GPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKETIDRS--------------TYGFFN---GEPTYAYS 341 (875)
T ss_pred CCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCcccccccc--------------cccccC---CCcceeec
Confidence 2346999999999973 122233444444456677799996521111 111111 34433221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHh
Q 001149 609 HTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 688 (1138)
Q Consensus 609 ~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~ 688 (1138)
+ ...+. ...|-|.....+.+.+.- .+.
T Consensus 342 l------------------eeAV~-----------DGfLvpy~vi~i~~~~~~------------~G~------------ 368 (875)
T COG4096 342 L------------------EEAVE-----------DGFLVPYKVIRIDTDFDL------------DGW------------ 368 (875)
T ss_pred H------------------HHHhh-----------ccccCCCCceEEeeeccc------------cCc------------
Confidence 1 11111 012222333333322210 000
Q ss_pred hHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcc
Q 001149 689 SFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEH 768 (1138)
Q Consensus 689 ~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~ 768 (1138)
+|.-+..... ...+..++ ++...+....+ .
T Consensus 369 --------------~~~~~serek---~~g~~i~~----dd~~~~~~d~d--------------r--------------- 398 (875)
T COG4096 369 --------------KPDAGSEREK---LQGEAIDE----DDQNFEARDFD--------------R--------------- 398 (875)
T ss_pred --------------CcCccchhhh---hhccccCc----ccccccccccc--------------h---------------
Confidence 0000000000 00000000 00000000000 0
Q ss_pred cccccCCCchHHHHHHHHHHhhcC---C---CeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHH
Q 001149 769 TYKELDYSGKMVLLLDILTMCSNM---G---DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESS 842 (1138)
Q Consensus 769 ~~~~~~~S~Kl~~L~eiL~~~~~~---g---~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~ 842 (1138)
.+..-.....+...|...... | .|.|||+....+++.|...|...... .+|.-...|+|...
T Consensus 399 ---~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype-------~~~~~a~~IT~d~~-- 466 (875)
T COG4096 399 ---TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE-------YNGRYAMKITGDAE-- 466 (875)
T ss_pred ---hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc-------ccCceEEEEeccch--
Confidence 000011222333333333332 3 59999999999999999999875322 13444567888766
Q ss_pred HHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhh-------CCCCc-EEEEEE
Q 001149 843 ERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY-------GQTKP-VFAYRL 914 (1138)
Q Consensus 843 eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~Ri-------GQ~k~-V~VyrL 914 (1138)
+=+..|+.|-. +.+...+.+|...+..|+|...+-.+|++-.--+-....|.+||.-|+ ||.|. ..|+.|
T Consensus 467 ~~q~~Id~f~~--ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf 544 (875)
T COG4096 467 QAQALIDNFID--KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDF 544 (875)
T ss_pred hhHHHHHHHHh--cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEh
Confidence 55678888876 333445689999999999999999999999999999999999999996 35544 666666
Q ss_pred e
Q 001149 915 M 915 (1138)
Q Consensus 915 v 915 (1138)
+
T Consensus 545 ~ 545 (875)
T COG4096 545 V 545 (875)
T ss_pred h
Confidence 5
No 60
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.65 E-value=2.5e-14 Score=169.98 Aligned_cols=319 Identities=18% Similarity=0.233 Sum_probs=201.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~ 459 (1138)
-.|-..|+.++.=+..-+.. ...-.-+|--|+|+|||++|+..+......+ .-+.+.+|+.++. |-.
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~--------~~~M~RLlQGDVGSGKTvVA~laml~ai~~G----~Q~ALMAPTEILA~QH~ 328 (677)
T COG1200 261 FKLTNAQKRVIKEILADLAS--------PVPMNRLLQGDVGSGKTVVALLAMLAAIEAG----YQAALMAPTEILAEQHY 328 (677)
T ss_pred CCccHHHHHHHHHHHhhhcC--------chhhHHHhccCcCCCHHHHHHHHHHHHHHcC----CeeEEeccHHHHHHHHH
Confidence 45677888888765443321 3445668888999999999887777666553 4678899998776 899
Q ss_pred HHHHHHCCCCCCCeEEEEecCcc-hhHHHHHHHHHhh-cCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~-~~~r~~~l~~~~~-~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
+.+.+|++.- .++|..+.+.- ...|...+..... ..+++|-|+..|..-. --.+..+||
T Consensus 329 ~~~~~~l~~~--~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V-----------------~F~~LgLVI 389 (677)
T COG1200 329 ESLRKWLEPL--GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV-----------------EFHNLGLVI 389 (677)
T ss_pred HHHHHHhhhc--CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce-----------------eecceeEEE
Confidence 9999999752 37788777754 3445555555543 3578888887765211 011557899
Q ss_pred EcCCcccCCcccHHHHHHHhc-c-cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChH
Q 001149 538 CDEAHMIKNTRADTTQALKQV-K-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 615 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l-~-~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~ 615 (1138)
+||-|++. ...-..++.- . .++.++||||||..++. |- .||+.
T Consensus 390 iDEQHRFG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA----lt------~fgDl---------------------- 434 (677)
T COG1200 390 IDEQHRFG---VHQRLALREKGEQNPHVLVMTATPIPRTLA----LT------AFGDL---------------------- 434 (677)
T ss_pred Eecccccc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHH----HH------Hhccc----------------------
Confidence 99999983 3333344333 5 68999999999986653 00 00100
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCC-HHHHHHHHHHHHhhcccccccchHHHHhhHHHHH
Q 001149 616 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLS-PLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY 694 (1138)
Q Consensus 616 ~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls-~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l 694 (1138)
+. .+..+||+..--+...-+. ..-.++|+.+.......
T Consensus 435 -----------------------dv-S~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~G----------------- 473 (677)
T COG1200 435 -----------------------DV-SIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKG----------------- 473 (677)
T ss_pred -----------------------cc-hhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcC-----------------
Confidence 00 1223688763222222221 22234444332221100
Q ss_pred HHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccC
Q 001149 695 QALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 774 (1138)
Q Consensus 695 ~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 774 (1138)
+- ..|. +..++
T Consensus 474 --------rQ-----------------------------------------------------aY~V--------cPLIe 484 (677)
T COG1200 474 --------RQ-----------------------------------------------------AYVV--------CPLIE 484 (677)
T ss_pred --------CE-----------------------------------------------------EEEE--------ecccc
Confidence 00 0000 01122
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
.|.|+. + ..+..+...|+. +..++++..++|.++.+++++++.+|++
T Consensus 485 ESE~l~-l---------------------~~a~~~~~~L~~----------~~~~~~vgL~HGrm~~~eKd~vM~~Fk~- 531 (677)
T COG1200 485 ESEKLE-L---------------------QAAEELYEELKS----------FLPELKVGLVHGRMKPAEKDAVMEAFKE- 531 (677)
T ss_pred ccccch-h---------------------hhHHHHHHHHHH----------HcccceeEEEecCCChHHHHHHHHHHHc-
Confidence 233333 0 112233333443 1246789999999999999999999997
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCcEEE
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGS-WNPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~-WNP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
+++. +|+||.+..+|+|++.|+.+||.++. +--+...|-.||++|=+...-|..
T Consensus 532 --~e~~-ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~L 586 (677)
T COG1200 532 --GEID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVL 586 (677)
T ss_pred --CCCc-EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEE
Confidence 4454 58999999999999999999999984 688899999999999766555543
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.64 E-value=2.7e-14 Score=177.04 Aligned_cols=118 Identities=20% Similarity=0.304 Sum_probs=90.9
Q ss_pred cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHH-----HHHHHHcC----CC----CC
Q 001149 791 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ-----KLVERFNE----PL----NK 857 (1138)
Q Consensus 791 ~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~-----~~i~~Fn~----~~----n~ 857 (1138)
..+.++|||++....++.|...|.. .|+ ..++|.+++.+|. .++++|.+ .. ++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~------------~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~ 335 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPK------------EKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQ 335 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHh------------cCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccc
Confidence 3578999999999999999999986 344 8999999999999 78899975 21 11
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCC--cEEEEEEecCCCHHHHHHH
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK--PVFAYRLMAHGTMEEKIYK 926 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k--~V~VyrLv~~gTiEekI~~ 926 (1138)
.. .+||+|++.+.|||+.. ++||++..++ ..++||+||++|.|... .++|+.+-....-+..+|.
T Consensus 336 g~-~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~ 402 (844)
T TIGR02621 336 GT-VYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYG 402 (844)
T ss_pred cc-eEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCC
Confidence 13 47999999999999975 9999877664 68999999999999863 3555544111223456664
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.5e-14 Score=163.51 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|-..+..+|... ...++|+|+.+.+....+...|.-.+. ..+..+-.++|+.+.+.|.+++.+|+.+
T Consensus 416 kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~--------~~~~~~s~~t~~l~~k~r~k~l~~f~~g--- 482 (620)
T KOG0350|consen 416 KPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFC--------SDNFKVSEFTGQLNGKRRYKMLEKFAKG--- 482 (620)
T ss_pred chHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhc--------cccchhhhhhhhhhHHHHHHHHHHHhcC---
Confidence 455666677653 478999999999999999888883210 1345556699999999999999999974
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHH
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 928 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq 928 (1138)
.+. +||++++++.||++-+.+.||.||||-.-..+++|+||..|-||.- ++|.++... |++.+...
T Consensus 483 ~i~-vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~~r~F~kl 548 (620)
T KOG0350|consen 483 DIN-VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--EKRLFSKL 548 (620)
T ss_pred Cce-EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc--cchHHHHH
Confidence 444 5888899999999999999999999999999999999999999974 445555442 34444333
No 63
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=177.58 Aligned_cols=320 Identities=17% Similarity=0.187 Sum_probs=209.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc-c---CCCceEEEeCcchH
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN-L---GLRTALIVTPVNVL 455 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~-~---~~k~vLIV~P~sll 455 (1138)
...+.|+|+.++..+ ..|.+.++...+|.|||..|+.-+...+.... . +.-.+|-|.|..-+
T Consensus 20 ~~~~t~~Q~~a~~~i--------------~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 20 FTSLTPPQRYAIPEI--------------HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCCCCHHHHHHHHHH--------------hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 456899999999876 36899999999999999998877665554431 1 12358999997666
Q ss_pred HH-HHHHHHHHCCCCCCCeEEEEecCcchh-HHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCC
Q 001149 456 HN-WKQEFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP 533 (1138)
Q Consensus 456 ~q-W~~E~~kw~p~~~~~l~V~~~~~~~~~-~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~ 533 (1138)
.| -..-+..|... ..+.|.+-+|.... +|... ..+..+|+|||.+++..+...+. +...+ .+.
T Consensus 86 n~Di~~rL~~~~~~--~G~~v~vRhGDT~~~er~r~---~~~PPdILiTTPEsL~lll~~~~-----~r~~l-----~~v 150 (814)
T COG1201 86 NNDIRRRLEEPLRE--LGIEVAVRHGDTPQSEKQKM---LKNPPHILITTPESLAILLNSPK-----FRELL-----RDV 150 (814)
T ss_pred HHHHHHHHHHHHHH--cCCccceecCCCChHHhhhc---cCCCCcEEEeChhHHHHHhcCHH-----HHHHh-----cCC
Confidence 54 55555555432 23555555554433 33322 23678999999999986644331 11111 266
Q ss_pred CEEEEcCCcccCCcc--cHHHHHHHhc---c-cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccC
Q 001149 534 DILVCDEAHMIKNTR--ADTTQALKQV---K-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG 607 (1138)
Q Consensus 534 dlVIlDEaH~iKN~~--S~~skal~~l---~-~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g 607 (1138)
.+||+||.|.+.+.+ ++.+-.+.+| . --.||+||||=- ++.+ ...||...-.
T Consensus 151 r~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~---varfL~g~~~----------------- 208 (814)
T COG1201 151 RYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG--PPEE---VAKFLVGFGD----------------- 208 (814)
T ss_pred cEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC--CHHH---HHHHhcCCCC-----------------
Confidence 789999999998543 6666666665 2 468999999942 3322 2223221100
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHH
Q 001149 608 QHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR 687 (1138)
Q Consensus 608 ~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~ 687 (1138)
....+......+.++.+.++-....
T Consensus 209 -------------------------------~~~Iv~~~~~k~~~i~v~~p~~~~~------------------------ 233 (814)
T COG1201 209 -------------------------------PCEIVDVSAAKKLEIKVISPVEDLI------------------------ 233 (814)
T ss_pred -------------------------------ceEEEEcccCCcceEEEEecCCccc------------------------
Confidence 0001110111111111111000000
Q ss_pred hhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhc
Q 001149 688 KSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHE 767 (1138)
Q Consensus 688 ~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 767 (1138)
|.
T Consensus 234 ------------------------------------------------------------------------~~------ 235 (814)
T COG1201 234 ------------------------------------------------------------------------YD------ 235 (814)
T ss_pred ------------------------------------------------------------------------cc------
Confidence 00
Q ss_pred ccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHH
Q 001149 768 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL 847 (1138)
Q Consensus 768 ~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~ 847 (1138)
.....+-+..+.+++ +....+|||++.+.+.+.+...|.++ .+..+..-|||.+.+.|..+
T Consensus 236 ----~~~~~~~~~~i~~~v----~~~~ttLIF~NTR~~aE~l~~~L~~~-----------~~~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 236 ----EELWAALYERIAELV----KKHRTTLIFTNTRSGAERLAFRLKKL-----------GPDIIEVHHGSLSRELRLEV 296 (814)
T ss_pred ----cchhHHHHHHHHHHH----hhcCcEEEEEeChHHHHHHHHHHHHh-----------cCCceeeecccccHHHHHHH
Confidence 000112233333444 44568999999999999999999974 24788999999999999999
Q ss_pred HHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHH-HhhCCC
Q 001149 848 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRA-WRYGQT 906 (1138)
Q Consensus 848 i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~-~RiGQ~ 906 (1138)
-++|++ +..++ +++|....+||+.-..+.||.|.+|-.-+...||+||+ ||+|..
T Consensus 297 E~~lk~---G~lra-vV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~ 352 (814)
T COG1201 297 EERLKE---GELKA-VVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEV 352 (814)
T ss_pred HHHHhc---CCceE-EEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCc
Confidence 999997 45664 78888999999999999999999999999999999998 777765
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=1.8e-13 Score=169.79 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=101.6
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
...|+.+|++.+......+.++|||+.+....+.|...|.. .|+++..++|.+...++..+..+|..
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~------------~gi~~~~L~~~~~~~e~~~i~~ag~~- 476 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE------------AGIPHNLLNAKNAAKEAQIIAEAGQK- 476 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCEEEecCCccHHHHHHHHHcCCC-
Confidence 35699999999988767799999999999999999999987 68999999999887777777666653
Q ss_pred CCCCceEEEeeccccccCCCc---ccCC-----EEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 855 LNKRVKCTLISTRAGSLGINL---HSAN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNL---t~An-----~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
+. ++|+|..+|.|+++ .+.. +||.+|.|-|+..+.|++||++|.|..-..
T Consensus 477 --g~---VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 477 --GA---VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred --Ce---EEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 22 68999999999999 4666 999999999999999999999999987433
No 65
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.59 E-value=4.7e-15 Score=146.46 Aligned_cols=120 Identities=32% Similarity=0.392 Sum_probs=109.4
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+..+.+++......+.++|||+.+...+..+...|.. .+..+..++|+++..+|..+++.|+++.
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~f~~~~- 78 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK------------PGIKVAALHGDGSQEEREEVLKDFREGE- 78 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh------------cCCcEEEEECCCCHHHHHHHHHHHHcCC-
Confidence 699999999998766789999999999999999999986 4688999999999999999999999742
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
..+|++|.++++|+|++.+++||+++++|++..+.|++||++|.||+..|++|
T Consensus 79 ---~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 79 ---IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ---CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 24788999999999999999999999999999999999999999998888775
No 66
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=7.4e-15 Score=153.80 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=107.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~ 459 (1138)
-+|+|||.+++.-+++.+... .....++|...||.|||+.+++++..+.. ++|||||. +++.||.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~-------~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENK-------KEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTT-------SGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc-------CCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHH
Confidence 369999999999887755320 13578999999999999999998887743 89999997 6888999
Q ss_pred HHHHHHCCCCCCCeEEEEe-------------cCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHh
Q 001149 460 QEFMKWRPSELKPLRVFML-------------EDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 526 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~-------------~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~ 526 (1138)
++|..+.+.. ..+... ........ ...-.....+++++|..+........... .......
T Consensus 68 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~l~~~~~~~~~~~-~~~~~~~ 140 (184)
T PF04851_consen 68 DEFDDFGSEK---YNFFEKSIKPAYDSKEFISIQDDISDK---SESDNNDKDIILTTYQSLQSDIKEEKKID-ESARRSY 140 (184)
T ss_dssp HHHHHHSTTS---EEEEE--GGGCCE-SEEETTTTEEEHH---HHHCBSS-SEEEEEHHHHHHHHHH----------GCH
T ss_pred HHHHHhhhhh---hhhcccccccccccccccccccccccc---cccccccccchhhHHHHHHhhcccccccc-cchhhhh
Confidence 9998887652 122111 00000111 11123466799999999865321110000 0000111
Q ss_pred hhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCC
Q 001149 527 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPL 571 (1138)
Q Consensus 527 ~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPl 571 (1138)
......+++||+||||++.+... ++.+......++++|||||.
T Consensus 141 ~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 141 KLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp HGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 23345889999999999854432 66666688999999999994
No 67
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=1.6e-13 Score=154.62 Aligned_cols=122 Identities=20% Similarity=0.345 Sum_probs=106.6
Q ss_pred CCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 774 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 774 ~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
...-|+..|+++|.. ....|+|||-..-...++...+|..+ ..++.++-++|.++...|.+++..|.+
T Consensus 238 ~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~----------l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 238 EADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRL----------LKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred cHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHH----------hCCCcEEEecchhcchhHHHHHHHHHh
Confidence 445699999999987 45689999999999999998888874 257889999999999999999999998
Q ss_pred CCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
..++ +|++|++++.||++++.+.||.||||-+|+...+|.||..|.|..-.-.|
T Consensus 306 ~~~~----vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 306 LSNG----VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred ccCc----eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 5444 69999999999999999999999999999999999999999997744333
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.57 E-value=1.7e-13 Score=173.51 Aligned_cols=344 Identities=19% Similarity=0.197 Sum_probs=224.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQE 461 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~E 461 (1138)
|++||.++++.++ .|...|+.-.||+|||..-+..|...+.... ..+.|+|-|.+ |.....+.
T Consensus 71 lY~HQ~~A~~~~~--------------~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 71 LYSHQVDALRLIR--------------EGRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALANDQAER 134 (851)
T ss_pred ccHHHHHHHHHHH--------------CCCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhHhhHHHH
Confidence 9999999999884 5689999999999999887766655544433 34889999966 55578999
Q ss_pred HHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCC
Q 001149 462 FMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEA 541 (1138)
Q Consensus 462 ~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEa 541 (1138)
|.+|.......+.+..|+|.....+.. .......+|++|+|+|+..+....... ..++...+.+||+||+
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~--~~~~~pp~IllTNpdMLh~~llr~~~~--------~~~~~~~Lk~lVvDEl 204 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERR--AIIRNPPDILLTNPDMLHYLLLRNHDA--------WLWLLRNLKYLVVDEL 204 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHH--HHHhCCCCEEEeCHHHHHHHhccCcch--------HHHHHhcCcEEEEecc
Confidence 999976544357888888877655443 223478899999999987532221111 1122225889999999
Q ss_pred cccCC-cccHHHHHHHhcc--------cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCC-cccCCCCC
Q 001149 542 HMIKN-TRADTTQALKQVK--------CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNP-IENGQHTN 611 (1138)
Q Consensus 542 H~iKN-~~S~~skal~~l~--------~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~p-i~~g~~~~ 611 (1138)
|..++ ..|..+-.+++|+ ....++.|||- ++..+|...+..- ...
T Consensus 205 HtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~----- 259 (851)
T COG1205 205 HTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEV----- 259 (851)
T ss_pred eeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCccee-----
Confidence 99985 4567777777762 34558888883 3333443332210 000
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhh-cCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 001149 612 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 690 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~-~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~ 690 (1138)
.+.. .-|....+++.-. .+....-+.
T Consensus 260 ------------------------------~v~~~g~~~~~~~~~~~~-p~~~~~~~~---------------------- 286 (851)
T COG1205 260 ------------------------------PVDEDGSPRGLRYFVRRE-PPIRELAES---------------------- 286 (851)
T ss_pred ------------------------------eccCCCCCCCceEEEEeC-Ccchhhhhh----------------------
Confidence 0000 1111111111110 000000000
Q ss_pred HHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccc
Q 001149 691 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 770 (1138)
Q Consensus 691 l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 770 (1138)
T Consensus 287 -------------------------------------------------------------------------------- 286 (851)
T COG1205 287 -------------------------------------------------------------------------------- 286 (851)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCC-CCCCCcccccCCceEEEEeCCCCHHHHHHHHH
Q 001149 771 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLP-RPGKQGKLWKKGKDWYRLDGRTESSERQKLVE 849 (1138)
Q Consensus 771 ~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~-~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~ 849 (1138)
..-++...+..++..+...+-|+|+|+.+...+..+..-..... ..+ + ........+.|++...+|.++..
T Consensus 287 ---~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~--~---~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 287 ---IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG--G---KLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred ---cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc--h---hhhhheeeccccCCHHHHHHHHH
Confidence 00124445556666667789999999999999998862222110 000 0 12356788899999999999999
Q ss_pred HHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCc-EEEEEEecCCCHHHHHH
Q 001149 850 RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTKP-VFAYRLMAHGTMEEKIY 925 (1138)
Q Consensus 850 ~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-NP~~~~QAigR~~RiGQ~k~-V~VyrLv~~gTiEekI~ 925 (1138)
.|+. +++. +++||.|...||++.+.+.||..--|- .-....|+.||++|-||.-. +.|++ .+-++..+.
T Consensus 359 ~~~~---g~~~-~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~---~~~~d~yy~ 429 (851)
T COG1205 359 EFKE---GELL-GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR---SDPLDSYYL 429 (851)
T ss_pred HHhc---CCcc-EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC---CCccchhhh
Confidence 9997 3443 699999999999999999999998887 66888999999999996533 33333 555655544
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=8.5e-13 Score=160.59 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=104.4
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
...|..+|.+++......+..+|||+.+....+.|...|.. .|+++..|+|... +|+..+..|...
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~------------~gi~~~~Lhg~~~--~rE~~ii~~ag~ 520 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLRE------------AGLPHQVLNAKQD--AEEAAIVARAGQ 520 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCEEEeeCCcH--HHHHHHHHHcCC
Confidence 35699999999988776788999999999999999999987 6899999999865 666666666642
Q ss_pred CCCCceEEEeeccccccCCCcc---cCC-----EEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHH
Q 001149 855 LNKRVKCTLISTRAGSLGINLH---SAN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 926 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt---~An-----~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~ 926 (1138)
. + . ++|+|..+|.|+++. ... +||.+|.|-|+..+.|++||++|.|..-.+.. |+ |.|+.++.
T Consensus 521 ~-g--~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~--~i---s~eD~l~~ 591 (656)
T PRK12898 521 R-G--R-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA--IL---SLEDDLLQ 591 (656)
T ss_pred C-C--c-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE--Ee---chhHHHHH
Confidence 2 2 2 689999999999988 443 99999999999999999999999997633322 22 44666664
Q ss_pred H
Q 001149 927 R 927 (1138)
Q Consensus 927 r 927 (1138)
+
T Consensus 592 ~ 592 (656)
T PRK12898 592 S 592 (656)
T ss_pred h
Confidence 4
No 70
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.1e-14 Score=152.02 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|+..|.++-..+. =...+|||+.....|.|.+-++. .++.+.-++|.++.++|.++++.|+...
T Consensus 253 KfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~------------~nftVssmHGDm~qkERd~im~dFRsg~-- 316 (400)
T KOG0328|consen 253 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRE------------ANFTVSSMHGDMEQKERDKIMNDFRSGK-- 316 (400)
T ss_pred hHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHh------------hCceeeeccCCcchhHHHHHHHHhhcCC--
Confidence 5555555544331 24689999999999999999986 6789999999999999999999999743
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCH
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 920 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTi 920 (1138)
-+ +||+|.+-+.||+.+..+.||.||.|-|+..+++||||.+|+|.+- .+..|+....+
T Consensus 317 -Sr-vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 317 -SR-VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred -ce-EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 33 5999999999999999999999999999999999999999999753 45567765544
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.55 E-value=3.5e-13 Score=164.70 Aligned_cols=116 Identities=19% Similarity=0.150 Sum_probs=102.5
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..++.+.+......|..|||||.+....+.|...|.. .|++...++|. ..+|+..+-.|...+
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~------------~gi~~~~Lna~--q~~rEa~ii~~ag~~ 453 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE------------RGIPHNVLNAK--NHEREAEIIAQAGRK 453 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------cCCCeEEeeCC--hHHHHHHHHHhcCCC
Confidence 3588888888888888899999999999999999999997 68999999998 679999999998532
Q ss_pred CCCceEEEeeccccccCCCccc-------CCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 856 NKRVKCTLISTRAGSLGINLHS-------ANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~-------An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
. -++|+|..+|.|+++.. ..+||.++.+-|+..+.|++||++|.|..-..
T Consensus 454 ---g-~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 454 ---G-AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred ---c-eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 2 26999999999999887 66999999999999999999999999988443
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.55 E-value=5.5e-13 Score=155.32 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+.|+|||++....++.+...|+.. ..++.+..++|.++..+|.+.. +. .+|++|.+.+.
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~----------~~~~~~~~l~g~~~~~~R~~~~---------~~-~iLVaTdv~~r 330 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ----------GLGDDIGRITGFAPKKDRERAM---------QF-DILLGTSTVDV 330 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh----------CCCceEEeeecCCCHHHHHHhc---------cC-CEEEEecHHhc
Confidence 5789999999999999999999862 1246788999999998887653 12 26999999999
Q ss_pred CCCcccCCEEEEEcCCCCcchHHHHHHHHH
Q 001149 872 GINLHSANRVIIVDGSWNPTYDLQAIYRAW 901 (1138)
Q Consensus 872 GLNLt~An~VIi~D~~WNP~~~~QAigR~~ 901 (1138)
|||+.. +.|| ++ +-++..+.||+||++
T Consensus 331 GiDi~~-~~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 331 GVDFKR-DWLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ccCCCC-ceEE-EC-CCCHHHHhhhcccCC
Confidence 999986 4666 66 457888999999863
No 73
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.54 E-value=6e-13 Score=173.92 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCC----------------Cccc--ccCC---ceEEEEeCCCCHHHHHHHHHH
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGK----------------QGKL--WKKG---KDWYRLDGRTESSERQKLVER 850 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~----------------~~~~--~~~G---i~~~rldGsts~~eR~~~i~~ 850 (1138)
.+.++|||+++....+.+...|+....... .+.. -..+ .....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 468999999999999999999876421000 0000 0001 124567899999999999999
Q ss_pred HcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhh
Q 001149 851 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 903 (1138)
Q Consensus 851 Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~Ri 903 (1138)
|++ +.++ +|++|.+.+.|||+...+.||.|+.|.+.+...|++||++|.
T Consensus 323 fK~---G~Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS---GELR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh---CCce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 996 5565 589999999999999999999999999999999999999885
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.53 E-value=4.9e-12 Score=158.32 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=81.7
Q ss_pred EcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCC--HHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcc
Q 001149 799 FSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTE--SSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLH 876 (1138)
Q Consensus 799 FSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts--~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt 876 (1138)
|..+....+.+++.|.+++ .+.++.++||.+. ..+++++++.|.+ +++. +|++|...+.|+|+.
T Consensus 432 l~~~g~G~e~~~e~l~~~f----------p~~~v~~~~~d~~~~~~~~~~~l~~f~~---g~~~-ILVgT~~iakG~d~p 497 (679)
T PRK05580 432 LVPVGPGTERLEEELAELF----------PEARILRIDRDTTRRKGALEQLLAQFAR---GEAD-ILIGTQMLAKGHDFP 497 (679)
T ss_pred eEEeeccHHHHHHHHHHhC----------CCCcEEEEeccccccchhHHHHHHHHhc---CCCC-EEEEChhhccCCCCC
Confidence 3444456778888888742 4788999999986 4679999999996 3444 588999999999999
Q ss_pred cCCEEEEEcCC---CCc---------chHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 877 SANRVIIVDGS---WNP---------TYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 877 ~An~VIi~D~~---WNP---------~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
..+.|+++|.+ ..| ....|+.||++|.|....|.+..+-..
T Consensus 498 ~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 498 NVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred CcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 99999999876 233 568999999999888777776654443
No 75
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.53 E-value=1.4e-12 Score=160.93 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+..+|||......++.+...|.... .|+.+..++|+++. +++.+++|.. +++.+ +|++|..++.
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~----------~~~~v~~LHG~Lsq--~eq~l~~ff~--~gk~k-ILVATdIAER 458 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRL----------PIYDFYIIHGKVPN--IDEILEKVYS--SKNPS-IIISTPYLES 458 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhc----------CCceEEeccCCcCH--HHHHHHHHhc--cCcee-EEeccChhhc
Confidence 35689999999999999999998621 26889999999985 4577788742 24444 6899999999
Q ss_pred CCCcccCCEEEEEc----CC--------CCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 872 GINLHSANRVIIVD----GS--------WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 872 GLNLt~An~VIi~D----~~--------WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
||++.+.++||-++ |. .+.+...||.||++|. ++=.+|+|+++..+.
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 99999999999987 21 2566778888888887 467888999887653
No 76
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.52 E-value=1.6e-12 Score=148.14 Aligned_cols=119 Identities=21% Similarity=0.245 Sum_probs=107.4
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
+..+.|...|+++|... ....+|||.+.....+.|...|.+ .|+..++++|+-++++|+.++..|+
T Consensus 499 ~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK------------~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 499 VSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEK------------AGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred ecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhh------------ccceEEEeeCCccHHHHHHHHHHHH
Confidence 45577899999999975 467999999999999999999997 5899999999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
++.. . +|+.|.++|.||+++..++||.||..-+-..+.++|||.+|-|+.-.+
T Consensus 565 ~~t~---d-IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta 617 (673)
T KOG0333|consen 565 EGTG---D-ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA 617 (673)
T ss_pred hcCC---C-EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee
Confidence 7432 2 689999999999999999999999999999999999999999987543
No 77
>COG4889 Predicted helicase [General function prediction only]
Probab=99.51 E-value=9.4e-13 Score=156.05 Aligned_cols=173 Identities=22% Similarity=0.303 Sum_probs=106.2
Q ss_pred CccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEE
Q 001149 370 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 449 (1138)
Q Consensus 370 ~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV 449 (1138)
+-...+|..-..++||||.+++.-..+.+ +.+.+|=|-...|.|||.+++-+.-.+.. .++|.+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F----------~~n~RGkLIMAcGTGKTfTsLkisEala~------~~iL~L 212 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGF----------SDNDRGKLIMACGTGKTFTSLKISEALAA------ARILFL 212 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhc----------ccccCCcEEEecCCCccchHHHHHHHHhh------hheEee
Confidence 34456666677889999999998776643 23456677788999999999987766532 589999
Q ss_pred eCc-chHHHHHHHHHHHCCCCCCCeEEEEecCcch---------------hHHHHHHHHHhh-----cCCEEEEccchhh
Q 001149 450 TPV-NVLHNWKQEFMKWRPSELKPLRVFMLEDVSR---------------DRRAELLAKWRA-----KGGVFLIGYTAFR 508 (1138)
Q Consensus 450 ~P~-sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~---------------~~r~~~l~~~~~-----~~~VvIity~~~r 508 (1138)
||. +|+.|-.+|+..-....+.+..|+.-...++ ..-..++..|.. .--|++.||+.+-
T Consensus 213 vPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 213 VPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred cchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 995 6788865554432222222233332222111 122234444432 2237788888764
Q ss_pred cccccccccchhhHHHHhhhhccCCCEEEEcCCcccCC------cccHHHHH--HHhcccCeEEEEecCC
Q 001149 509 NLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKN------TRADTTQA--LKQVKCQRRIALTGSP 570 (1138)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN------~~S~~ska--l~~l~~~~RllLTGTP 570 (1138)
.+ .+....=..+||+|||||||+--+ ..|..++. -..+++.+|+-|||||
T Consensus 293 ~i------------~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 293 RI------------KEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred HH------------HHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 31 122222234899999999998532 11222221 2345888999999999
No 78
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.8e-12 Score=153.23 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=211.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~ 459 (1138)
...||=|.++|..+. .+..+|.-..+|-||++- ..|-.++. .+.+|||.| .+|+..-.
T Consensus 16 ~~FR~gQ~evI~~~l--------------~g~d~lvvmPTGgGKSlC--yQiPAll~-----~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 16 ASFRPGQQEIIDALL--------------SGKDTLVVMPTGGGKSLC--YQIPALLL-----EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred cccCCCHHHHHHHHH--------------cCCcEEEEccCCCCcchH--hhhHHHhc-----CCCEEEECchHHHHHHHH
Confidence 347888999998774 358899999999999963 34444433 348999999 57888888
Q ss_pred HHHHHHCCCCCCCeEEEEecCc-chhHHHHHHHHHhh-cCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 460 QEFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~-~~~~r~~~l~~~~~-~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
+.+.... +.+..+++. +...+..++..... ...++.++++.+.+- .+.+. +......+++
T Consensus 75 ~~l~~~G------i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~---------~f~~~---L~~~~i~l~v 136 (590)
T COG0514 75 DQLEAAG------IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSP---------RFLEL---LKRLPISLVA 136 (590)
T ss_pred HHHHHcC------ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcCh---------HHHHH---HHhCCCceEE
Confidence 8887643 556666655 56666666555433 246788888887642 12222 2244788999
Q ss_pred EcCCcccC-------CcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCC
Q 001149 538 CDEAHMIK-------NTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 610 (1138)
Q Consensus 538 lDEaH~iK-------N~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~ 610 (1138)
|||||-+- .....+......+....+++||||--.--..|+-.++..-.+.. |..-|.+|
T Consensus 137 IDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~------~~~sfdRp------- 203 (590)
T COG0514 137 IDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANI------FRGSFDRP------- 203 (590)
T ss_pred echHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcce------EEecCCCc-------
Confidence 99999764 44455566666667778999988864333333333332222111 01111110
Q ss_pred CCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 001149 611 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 690 (1138)
Q Consensus 611 ~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~ 690 (1138)
.+|-.+..
T Consensus 204 ------------------------------------------------------Ni~~~v~~------------------ 211 (590)
T COG0514 204 ------------------------------------------------------NLALKVVE------------------ 211 (590)
T ss_pred ------------------------------------------------------hhhhhhhh------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccc
Q 001149 691 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 770 (1138)
Q Consensus 691 l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~ 770 (1138)
T Consensus 212 -------------------------------------------------------------------------------- 211 (590)
T COG0514 212 -------------------------------------------------------------------------------- 211 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCc--hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHH
Q 001149 771 KELDYSG--KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 848 (1138)
Q Consensus 771 ~~~~~S~--Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i 848 (1138)
..++ ++..+.+ .....+...|||+.++...+.|...|.. .|+....++|+++.++|+.+-
T Consensus 212 ---~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~------------~g~~a~~YHaGl~~~eR~~~q 273 (590)
T COG0514 212 ---KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRK------------NGISAGAYHAGLSNEERERVQ 273 (590)
T ss_pred ---cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHH------------CCCceEEecCCCCHHHHHHHH
Confidence 0001 1111111 1123345689999999999999999997 699999999999999999999
Q ss_pred HHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 849 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 849 ~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
++|.++ .++ +++.|.|-|.|||=++...||+||+|-+...+.|=+|||+|-|..-.+.+ |+..+.+.
T Consensus 274 ~~f~~~---~~~-iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail--l~~~~D~~ 340 (590)
T COG0514 274 QAFLND---EIK-VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL--LYSPEDIR 340 (590)
T ss_pred HHHhcC---CCc-EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE--eeccccHH
Confidence 999963 333 58899999999999999999999999999999999999999998755544 45544444
No 79
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.50 E-value=8.9e-13 Score=149.77 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=102.6
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..++.++..+|++.... .|||||+..-.+..++.+.|.++ .+++..|+|..++..|.....+|.+..
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~------------dlpv~eiHgk~~Q~kRT~~~~~F~kae 380 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYI------------DLPVLEIHGKQKQNKRTSTFFEFCKAE 380 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhc------------CCchhhhhcCCcccccchHHHHHhhcc
Confidence 45678899999986553 89999999999999999999974 688999999999999999999999754
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 906 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~ 906 (1138)
.+ +|++|++++.|+|++..+.||-||||-+|..+++|+||..|-|-+
T Consensus 381 sg----IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 381 SG----ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred cc----eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC
Confidence 33 799999999999999999999999999999999999999997765
No 80
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.49 E-value=1e-12 Score=151.71 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=105.7
Q ss_pred CCCchHHHHHHHHHHhhcC-------CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHH
Q 001149 774 DYSGKMVLLLDILTMCSNM-------GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQK 846 (1138)
Q Consensus 774 ~~S~Kl~~L~eiL~~~~~~-------g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~ 846 (1138)
....|...|+++|...... -++++||++....++.++.+|.. .|+.+.-|+|..+..+|.+
T Consensus 311 ~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~------------~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 311 NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS------------NGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc------------CCCCceeecchhhhhHHHH
Confidence 3355777777777754421 24999999999999999999996 6899999999999999999
Q ss_pred HHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC-CcEEEEE
Q 001149 847 LVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAYR 913 (1138)
Q Consensus 847 ~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~-k~V~Vyr 913 (1138)
.++.|.+ +.+. +||.|.+++.|||..+..+||+||.|-+-..+..||||.+|.|+. +.+-.+.
T Consensus 379 al~~Fr~---g~~p-vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 379 ALNDFRN---GKAP-VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred HHHHhhc---CCcc-eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 9999996 4444 589999999999999999999999999999999999999999998 4444443
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.49 E-value=4.1e-12 Score=165.70 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcch---HHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPT---LDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~---ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
.|...|.+++... +..+|||++.... ++.|..+|.. .|++...++|++ .+.+++|.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~------------~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLED------------LGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHH------------CCCcEEEEeCcH-----HHHHHHHHC
Confidence 3566677777643 5689999999877 9999999986 689999999998 234599996
Q ss_pred CCCCCceEEEee---ccccccCCCccc-CCEEEEEcCCC------CcchHHHHHHHHHhh
Q 001149 854 PLNKRVKCTLIS---TRAGSLGINLHS-ANRVIIVDGSW------NPTYDLQAIYRAWRY 903 (1138)
Q Consensus 854 ~~n~~v~v~LiS---TkaGg~GLNLt~-An~VIi~D~~W------NP~~~~QAigR~~Ri 903 (1138)
++++|++.+ |.+++.|||++. ..+||+|+.|- .......++||.-.+
T Consensus 375 ---G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 375 ---GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred ---CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 567765554 789999999998 89999999997 556667888888644
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=7e-12 Score=151.72 Aligned_cols=99 Identities=23% Similarity=0.234 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHH--HHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEE
Q 001149 805 TLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSER--QKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 882 (1138)
Q Consensus 805 ~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR--~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VI 882 (1138)
-.+.+++.|.+.+ .+.++.++|+.++...+ +++++.|.+ +++. +|++|...+.|+|+...+.|+
T Consensus 270 Gte~~~e~l~~~f----------p~~~v~~~d~d~~~~~~~~~~~l~~f~~---g~~~-ILVgT~~i~kG~d~~~v~lV~ 335 (505)
T TIGR00595 270 GTEQVEEELAKLF----------PGARIARIDSDTTSRKGAHEALLNQFAN---GKAD-ILIGTQMIAKGHHFPNVTLVG 335 (505)
T ss_pred cHHHHHHHHHhhC----------CCCcEEEEecccccCccHHHHHHHHHhc---CCCC-EEEeCcccccCCCCCcccEEE
Confidence 3577788887642 47889999999876655 899999996 3344 589999999999999999998
Q ss_pred EEcCCC---Cc---------chHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 883 IVDGSW---NP---------TYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 883 i~D~~W---NP---------~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
++|.+- .| ....|+.||++|.+..-.|.|..+-..
T Consensus 336 vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 336 VLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred EEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 887752 33 467999999999888777766544443
No 83
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=162.43 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=109.5
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~~ 460 (1138)
.|+|+|.++|.-.+ -.+.+.+++..+|.|||+.|...|...+..+ .++++.||| .+|..+=.+
T Consensus 31 el~~~qq~av~~~~-------------~~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa~Ek~~ 94 (766)
T COG1204 31 ELFNPQQEAVEKGL-------------LSDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALAEEKYE 94 (766)
T ss_pred HhhHHHHHHhhccc-------------cCCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHH
Confidence 89999999996543 1268999999999999999888777666543 469999999 567778888
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
||.+|-.- .++|....+...... .|....+|+|+||+.+-++...... +....++||+||
T Consensus 95 ~~~~~~~~---GirV~~~TgD~~~~~-----~~l~~~~ViVtT~EK~Dsl~R~~~~------------~~~~V~lvViDE 154 (766)
T COG1204 95 EFSRLEEL---GIRVGISTGDYDLDD-----ERLARYDVIVTTPEKLDSLTRKRPS------------WIEEVDLVVIDE 154 (766)
T ss_pred HhhhHHhc---CCEEEEecCCcccch-----hhhccCCEEEEchHHhhHhhhcCcc------------hhhcccEEEEee
Confidence 99865443 378888887654332 3446789999999998654321111 223678999999
Q ss_pred CcccCCc-c-----cHHHHHHHhcccCeEEEEecCC
Q 001149 541 AHMIKNT-R-----ADTTQALKQVKCQRRIALTGSP 570 (1138)
Q Consensus 541 aH~iKN~-~-----S~~skal~~l~~~~RllLTGTP 570 (1138)
+|.+... . +-+++....-..-+.++||||-
T Consensus 155 iH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl 190 (766)
T COG1204 155 IHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL 190 (766)
T ss_pred eeecCCcccCceehhHHHHHHhhCcceEEEEEeeec
Confidence 9999755 2 2233333333335889999994
No 84
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.45 E-value=1e-11 Score=142.08 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=115.2
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
.-|+.+|...|... ...|.|||-.+-.-+.++.+.+.++ +.|+..+-++|.+++..|..+..+|....
T Consensus 298 ~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rl----------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRL----------RPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred hhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhc----------CCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 45888999988874 4589999999998899999988875 47999999999999999999999998632
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 931 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K 931 (1138)
.++|++|.+++.||++.+.|.||-+|.|-+-..+++|+||..|++-.-...+|-. -+-||.+..+...|
T Consensus 366 ----~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 366 ----AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKK 434 (758)
T ss_pred ----ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHc
Confidence 3589999999999999999999999999999999999999999998877666533 33445655555444
No 85
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.45 E-value=5.1e-12 Score=144.23 Aligned_cols=139 Identities=20% Similarity=0.282 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHhhc--CCCeEEEEcCCcchHHHHHHHHhhCCCC---CCCc-------ccccCCceEEEEeCCCCHHHH
Q 001149 777 GKMVLLLDILTMCSN--MGDKSLVFSQSIPTLDLIEFYLSKLPRP---GKQG-------KLWKKGKDWYRLDGRTESSER 844 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~--~g~KvLVFSq~~~~ld~Le~~L~~l~~~---~~~~-------~~~~~Gi~~~rldGsts~~eR 844 (1138)
-++..|..+|..... ...|+|||-....+.+.=..+|...... +..+ .....+.++++++|+|++++|
T Consensus 407 LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 407 LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHH
Confidence 355666666665432 3458899988888877666655532111 1111 111235679999999999999
Q ss_pred HHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 845 QKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 845 ~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
......|..... .+|++|++++.||+|+...-||-||||..++.+..||||.-|+|-+-.-.. |+.+.-.|
T Consensus 487 ts~f~~Fs~~~~----~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 487 TSVFQEFSHSRR----AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHHHhhccccc----eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 999999987422 379999999999999999999999999999999999999999998854333 34444444
No 86
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.42 E-value=3e-12 Score=148.31 Aligned_cols=112 Identities=25% Similarity=0.309 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|++.|-++++.+ +-...||||....-.+-|..+|.. .|+++..|.|.|++.+|..+++.+++ -
T Consensus 259 klq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~s------------sG~d~~~ISgaM~Q~~Rl~a~~~lr~---f 321 (980)
T KOG4284|consen 259 KLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKS------------SGLDVTFISGAMSQKDRLLAVDQLRA---F 321 (980)
T ss_pred HHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhc------------cCCCeEEeccccchhHHHHHHHHhhh---c
Confidence 555666666554 235789999999999999999986 79999999999999999999999985 5
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK 907 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k 907 (1138)
+++ +|+||+..+.||+-..+|.||.+|++-+..++.+||||++|+|..-
T Consensus 322 ~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 322 RVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred eEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 676 5999999999999999999999999999999999999999999763
No 87
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=8.5e-13 Score=138.81 Aligned_cols=162 Identities=21% Similarity=0.235 Sum_probs=111.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~ 459 (1138)
..++|||.+++..+.. ...++++..++|+|||..++.++........ .+++||++| ..+..||.
T Consensus 7 ~~~~~~Q~~~~~~~~~-------------~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 7 EPLRPYQKEAIEALLS-------------GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWA 71 (201)
T ss_pred CCCCHHHHHHHHHHHc-------------CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHH
Confidence 4589999999988753 1168999999999999988887777665432 468999999 66788999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcC-CEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKG-GVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~-~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
.++.++++... ......+.+.... ..+..+.... ++++++|+.+........ .....++++|+
T Consensus 72 ~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~t~~~l~~~~~~~~------------~~~~~~~~iIi 135 (201)
T smart00487 72 EELKKLGPSLG-LKVVGLYGGDSKR---EQLRKLESGKTDILVTTPGRLLDLLENDL------------LELSNVDLVIL 135 (201)
T ss_pred HHHHHHhccCC-eEEEEEeCCcchH---HHHHHHhcCCCCEEEeChHHHHHHHHcCC------------cCHhHCCEEEE
Confidence 99999886521 1344444444322 2233344444 899999998764321110 12237889999
Q ss_pred cCCcccCC-ccc-HHHHHHHhc-ccCeEEEEecCCCCC
Q 001149 539 DEAHMIKN-TRA-DTTQALKQV-KCQRRIALTGSPLQN 573 (1138)
Q Consensus 539 DEaH~iKN-~~S-~~skal~~l-~~~~RllLTGTPlqN 573 (1138)
||+|.+.+ ... .....+..+ ...+++++||||..+
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 99999985 333 333334444 578999999999643
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.41 E-value=1.1e-10 Score=146.50 Aligned_cols=325 Identities=18% Similarity=0.243 Sum_probs=211.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWKQE 461 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~~E 461 (1138)
--|-|..+|.-..+-+.. ...---+++-++|.|||=+|+=.+...... .+-|.|+||++++. |-.+-
T Consensus 595 ET~DQl~AI~eVk~DM~~--------~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~----GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 595 ETPDQLKAIEEVKRDMES--------GKPMDRLICGDVGFGKTEVAMRAAFKAVMD----GKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred CCHHHHHHHHHHHHHhcc--------CCcchheeecCcCCcHHHHHHHHHHHHhcC----CCeEEEEcccHHhHHHHHHH
Confidence 346788888776554321 455667999999999999887655444333 37899999999887 55555
Q ss_pred HHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHh-hcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 462 FMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 462 ~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~-~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
|..-+.+ .|++|-.++-... ......++... ..-+|+|-|+..+..- ++ -.+..+||+|
T Consensus 663 FkeRF~~--fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kd-----v~------------FkdLGLlIID 723 (1139)
T COG1197 663 FKERFAG--FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKD-----VK------------FKDLGLLIID 723 (1139)
T ss_pred HHHHhcC--CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCC-----cE------------EecCCeEEEe
Confidence 6543332 3578887776443 33334444432 2346666666554310 00 0156899999
Q ss_pred CCcccCCcccHHHHHHHhcc-cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHH
Q 001149 540 EAHMIKNTRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVK 618 (1138)
Q Consensus 540 EaH~iKN~~S~~skal~~l~-~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~ 618 (1138)
|=|++.-. .-..++.++ .-..+-||||||...|.
T Consensus 724 EEqRFGVk---~KEkLK~Lr~~VDvLTLSATPIPRTL~------------------------------------------ 758 (1139)
T COG1197 724 EEQRFGVK---HKEKLKELRANVDVLTLSATPIPRTLN------------------------------------------ 758 (1139)
T ss_pred chhhcCcc---HHHHHHHHhccCcEEEeeCCCCcchHH------------------------------------------
Confidence 99998533 334566664 45789999999976542
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHH
Q 001149 619 IMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALA 698 (1138)
Q Consensus 619 ~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~Lr 698 (1138)
..+.+ -|+.+.+ .-||...+.|..-..+..-
T Consensus 759 ----------Msm~G---iRdlSvI--~TPP~~R~pV~T~V~~~d~---------------------------------- 789 (1139)
T COG1197 759 ----------MSLSG---IRDLSVI--ATPPEDRLPVKTFVSEYDD---------------------------------- 789 (1139)
T ss_pred ----------HHHhc---chhhhhc--cCCCCCCcceEEEEecCCh----------------------------------
Confidence 11111 1222232 2455444433222211100
Q ss_pred HHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCch
Q 001149 699 QIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGK 778 (1138)
Q Consensus 699 ki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~K 778 (1138)
T Consensus 790 -------------------------------------------------------------------------------- 789 (1139)
T COG1197 790 -------------------------------------------------------------------------------- 789 (1139)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 001149 779 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 858 (1138)
Q Consensus 779 l~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~ 858 (1138)
.++.+.|..-..+|..|-.-.+.+..+.-+...|+.+. ...++...+|.|+..+-++++..|.+ ++
T Consensus 790 -~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV----------PEarI~vaHGQM~e~eLE~vM~~F~~---g~ 855 (1139)
T COG1197 790 -LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELV----------PEARIAVAHGQMRERELEEVMLDFYN---GE 855 (1139)
T ss_pred -HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC----------CceEEEEeecCCCHHHHHHHHHHHHc---CC
Confidence 01122222223457888888888999999999999863 45678999999999999999999996 55
Q ss_pred ceEEEeeccccccCCCcccCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCcEEEEEEecC-CCHHHHHHHHHH
Q 001149 859 VKCTLISTRAGSLGINLHSANRVIIVDGS-WNPTYDLQAIYRAWRYGQTKPVFAYRLMAH-GTMEEKIYKRQV 929 (1138)
Q Consensus 859 v~v~LiSTkaGg~GLNLt~An~VIi~D~~-WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~-gTiEekI~~rq~ 929 (1138)
+. +|++|.....||+++.||++|+-+.+ +--+..-|-.|||+|-. +.-|-|-|+.. ..+-+.-.+|..
T Consensus 856 ~d-VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~k~lT~~A~kRL~ 925 (1139)
T COG1197 856 YD-VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPPQKALTEDAEKRLE 925 (1139)
T ss_pred CC-EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecCccccCHHHHHHHH
Confidence 65 47777799999999999999998885 57889999999999944 45677777764 344444444433
No 89
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.40 E-value=2.7e-12 Score=127.02 Aligned_cols=139 Identities=19% Similarity=0.166 Sum_probs=96.8
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHH
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLA 491 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~ 491 (1138)
++++.+.+|+|||.+++.++..+.... ..+++||+||...+. +|...+..|... .+.+..+.+........ .
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE---GIKVGYLIGGTSIKQQE--K 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC---CcEEEEEecCcchhHHH--H
Confidence 689999999999999999998877652 357999999987655 567777777753 24455544433222111 3
Q ss_pred HHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCcccHHH---HHHHhcccCeEEEEec
Q 001149 492 KWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT---QALKQVKCQRRIALTG 568 (1138)
Q Consensus 492 ~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~s---kal~~l~~~~RllLTG 568 (1138)
.+....++++++|+++....... ......+++||+||+|.+.+...... .........++++|||
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 142 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERL------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSA 142 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcC------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEec
Confidence 33467889999999875321100 01234799999999999988765543 3344457889999999
Q ss_pred CC
Q 001149 569 SP 570 (1138)
Q Consensus 569 TP 570 (1138)
||
T Consensus 143 Tp 144 (144)
T cd00046 143 TP 144 (144)
T ss_pred cC
Confidence 98
No 90
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.39 E-value=7e-11 Score=149.38 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=90.8
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
+.++|||......++.+...|.... ..++.++.++|+++.++|.++++.|.+ +..+ +|++|.+++.|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~---------~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rk-VlVATnIAErg 275 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERL---------DSDVLICPLYGELSLAAQDRAIKPDPQ---GRRK-VVLATNIAETS 275 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhc---------CCCcEEEEecCCCCHHHHHHHHhhccc---CCeE-EEEecchHhhc
Confidence 5689999999999999999997521 136889999999999999999999975 3444 68999999999
Q ss_pred CCcccCCEEEEEcCC----CCcch--------------HHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 873 INLHSANRVIIVDGS----WNPTY--------------DLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 873 LNLt~An~VIi~D~~----WNP~~--------------~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
|++.+.+.||.++.+ +||.. ..||.||++|. ++=..|+|+++.
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 999999999998864 55554 67999998887 466788998764
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.39 E-value=7.3e-11 Score=149.27 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=82.8
Q ss_pred HHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHH----HHHHHHHcCCCCCCceE
Q 001149 786 LTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSER----QKLVERFNEPLNKRVKC 861 (1138)
Q Consensus 786 L~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR----~~~i~~Fn~~~n~~v~v 861 (1138)
+......|.++|||++.+..+..+.+.|+... ..+..+..++|.++..+| +++++.|.......-..
T Consensus 553 i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~---------~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ 623 (878)
T PRK09694 553 MIAAANAGAQVCLICNLVDDAQKLYQRLKELN---------NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGR 623 (878)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhhC---------CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCe
Confidence 33333568999999999999999999998621 023678999999999888 56788994321111124
Q ss_pred EEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC
Q 001149 862 TLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 906 (1138)
Q Consensus 862 ~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~ 906 (1138)
+||+|.+...|||+ .++.+|....| ....+|++||++|.|..
T Consensus 624 ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 624 ILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 79999999999999 57877775554 56789999999999874
No 92
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.39 E-value=3.1e-13 Score=121.79 Aligned_cols=73 Identities=36% Similarity=0.471 Sum_probs=68.4
Q ss_pred CCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhC
Q 001149 828 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYG 904 (1138)
Q Consensus 828 ~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiG 904 (1138)
.|+.+..++|.++..+|+.+++.|+.... .+|++|.++++|||++.+++||+++++||+..+.|++||++|.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~----~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEI----RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSS----SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCc----eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 68999999999999999999999997433 36889999999999999999999999999999999999999998
No 93
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.39 E-value=8.9e-12 Score=137.83 Aligned_cols=116 Identities=23% Similarity=0.266 Sum_probs=99.1
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
+.|+..+..++.. ....+|+|||+....++|.|..-|.- .|+..--++|.-.+.+|+.+++.|+.
T Consensus 449 ~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l------------~gi~~q~lHG~r~Q~DrE~al~~~ks-- 513 (629)
T KOG0336|consen 449 SEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCL------------KGISSQSLHGNREQSDREMALEDFKS-- 513 (629)
T ss_pred HHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhh------------cccchhhccCChhhhhHHHHHHhhhc--
Confidence 4466555555554 35689999999999999888765553 68999999999999999999999996
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCc
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKP 908 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~ 908 (1138)
+.++ +|+.|..++.||++....||+.||.|-|-..+.+++||.+|-|.+-.
T Consensus 514 -G~vr-ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 514 -GEVR-ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred -CceE-EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 6676 58999999999999999999999999999999999999999997743
No 94
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.38 E-value=6.7e-12 Score=137.87 Aligned_cols=130 Identities=24% Similarity=0.302 Sum_probs=108.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
.+|+..|++-|++ ..-+||||+.-..-.|-|.+||-- +|+..+.|+|+-.+++|...|..|+.+.
T Consensus 407 EaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLl------------KGVEavaIHGGKDQedR~~ai~afr~gk 471 (610)
T KOG0341|consen 407 EAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLL------------KGVEAVAIHGGKDQEDRHYAIEAFRAGK 471 (610)
T ss_pred hhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHH------------ccceeEEeecCcchhHHHHHHHHHhcCC
Confidence 4688888888875 567999999999999999999974 7999999999999999999999999742
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 926 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~ 926 (1138)
. -+|+.|.+++-||++++..|||.||.|-.--++..||||.+|-|.+-- ...|+-+++-|.-+.+
T Consensus 472 K----DVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlD 536 (610)
T KOG0341|consen 472 K----DVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLD 536 (610)
T ss_pred C----ceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHH
Confidence 2 269999999999999999999999999998999999999999887632 2335556655554443
No 95
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=7.5e-11 Score=129.29 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=103.5
Q ss_pred CchHHHHHHHHHHhhc-CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 776 SGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~-~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
..|-.+|..+|....+ ....++||.|.+.+..+|...|+.+ +++..-+++.+++++|-..+.+|+.
T Consensus 236 ~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l------------e~r~~~lHs~m~Q~eR~~aLsrFrs- 302 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL------------EVRVVSLHSQMPQKERLAALSRFRS- 302 (442)
T ss_pred hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh------------ceeeeehhhcchHHHHHHHHHHHhh-
Confidence 3456677777776655 4668999999999999999999974 7899999999999999999999997
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC-CcEEE
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFA 911 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~-k~V~V 911 (1138)
+.++ +||.|++++.||+++...-||.+|.|-.|-.+++|+||..|-|.. -.+.+
T Consensus 303 --~~~~-iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSi 357 (442)
T KOG0340|consen 303 --NAAR-ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISI 357 (442)
T ss_pred --cCcc-EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEE
Confidence 3444 589999999999999999999999999999999999999998876 34444
No 96
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=1.5e-11 Score=143.07 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=104.7
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
-+|+.++.+++..- -.-.+|||.|+......|...|.. ..++++..++|..++.+|.+.+++|+.
T Consensus 372 ~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~-----------~~~i~v~vIh~e~~~~qrde~~~~FR~-- 436 (593)
T KOG0344|consen 372 KGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEI-----------YDNINVDVIHGERSQKQRDETMERFRI-- 436 (593)
T ss_pred hhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhh-----------ccCcceeeEecccchhHHHHHHHHHhc--
Confidence 57888888888874 456899999999988888888842 268999999999999999999999996
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC-CcEEEE
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAY 912 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~-k~V~Vy 912 (1138)
+.++| ||.|.+.+.||++.++|.||+||.+-.-..++.+|||++|-|+. +.+..|
T Consensus 437 -g~Iwv-LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 437 -GKIWV-LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred -cCeeE-EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 67874 88999999999999999999999999999999999999999987 445444
No 97
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.36 E-value=6.9e-11 Score=154.60 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCc---chHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 779 MVLLLDILTMCSNMGDKSLVFSQSI---PTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 779 l~~L~eiL~~~~~~g~KvLVFSq~~---~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
...|.++|+.. +.++|||++.. ..++.|..+|.. .|++...++|.++ +..+++|.+
T Consensus 315 ~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~------------~g~~a~~lhg~~~----~~~l~~Fr~-- 373 (1171)
T TIGR01054 315 KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLEN------------HGVKAVAYHATKP----KEDYEKFAE-- 373 (1171)
T ss_pred HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHh------------CCceEEEEeCCCC----HHHHHHHHc--
Confidence 34456666543 57899999998 889999999986 6899999999986 378999996
Q ss_pred CCCceEEEee---ccccccCCCccc-CCEEEEEcCCC
Q 001149 856 NKRVKCTLIS---TRAGSLGINLHS-ANRVIIVDGSW 888 (1138)
Q Consensus 856 n~~v~v~LiS---TkaGg~GLNLt~-An~VIi~D~~W 888 (1138)
++++|++.+ |.+++.|||++. .++||+||+|-
T Consensus 374 -G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 374 -GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred -CCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 567765554 689999999998 79999999974
No 98
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=5e-11 Score=135.53 Aligned_cols=142 Identities=20% Similarity=0.320 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCce
Q 001149 781 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 860 (1138)
Q Consensus 781 ~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~ 860 (1138)
.|..++.... .++++||.+....+..+.-+|.- -|+....++|+.++.+|-+.++.|++ ..+.
T Consensus 416 ~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGL------------lgl~agElHGsLtQ~QRlesL~kFk~---~eid 478 (691)
T KOG0338|consen 416 MLASLITRTF--QDRTIVFVRTKKQAHRLRILLGL------------LGLKAGELHGSLTQEQRLESLEKFKK---EEID 478 (691)
T ss_pred HHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHH------------hhchhhhhcccccHHHHHHHHHHHHh---ccCC
Confidence 3444555433 58999999999999999888875 48899999999999999999999996 4554
Q ss_pred EEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC-CcEEEEEEecCCCHHHHHHHHHHHH-----HHH
Q 001149 861 CTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAYRLMAHGTMEEKIYKRQVTK-----EGL 934 (1138)
Q Consensus 861 v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~-k~V~VyrLv~~gTiEekI~~rq~~K-----~~l 934 (1138)
+||+|.+++.||++.+..+||.|+.|-.--++.+|+||.-|-|.. +.| .|+.++ |.+|+.-.+.- ..+
T Consensus 479 -vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~--dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 479 -VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV---TLVGES--DRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred -EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE---EEeccc--cHHHHHHHHhhhhhcccch
Confidence 699999999999999999999999999999999999999999965 554 455555 66666443322 235
Q ss_pred HHHHccccccc
Q 001149 935 AARVVDRQQVH 945 (1138)
Q Consensus 935 ~~~vvd~~~~~ 945 (1138)
-+++|+...+.
T Consensus 553 k~R~i~~~~Ie 563 (691)
T KOG0338|consen 553 KNRNIPPEVIE 563 (691)
T ss_pred hhcCCCHHHHH
Confidence 55666555443
No 99
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=2.9e-10 Score=141.17 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=105.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..++++.+..+...|..|||||.+....+.|..+|.. .|+++..++|.....+|+.+.++|+.
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~------------~gi~h~vLnak~~q~Ea~iia~Ag~~-- 492 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK------------ENIKHQVLNAKFHEKEAQIIAEAGRP-- 492 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH------------cCCCeEeecCCCChHHHHHHHhCCCC--
Confidence 4689999999999999999999999999999999999997 79999999999999999999999996
Q ss_pred CCCceEEEeeccccccCCCcc--------------------------------------cCCEEEEEcCCCCcchHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLH--------------------------------------SANRVIIVDGSWNPTYDLQAI 897 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt--------------------------------------~An~VIi~D~~WNP~~~~QAi 897 (1138)
+. ++|+|..+|.|+++. +.=+||.-+.+=|--.|.|..
T Consensus 493 -G~---VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLr 568 (896)
T PRK13104 493 -GA---VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLR 568 (896)
T ss_pred -Cc---EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 33 699999999999866 334899999999999999999
Q ss_pred HHHHhhCCCCcEEEE
Q 001149 898 YRAWRYGQTKPVFAY 912 (1138)
Q Consensus 898 gR~~RiGQ~k~V~Vy 912 (1138)
||++|.|..-....|
T Consensus 569 GRaGRQGDPGss~f~ 583 (896)
T PRK13104 569 GRAGRQGDPGSSRFY 583 (896)
T ss_pred cccccCCCCCceEEE
Confidence 999999988554444
No 100
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.32 E-value=1.1e-10 Score=128.54 Aligned_cols=125 Identities=22% Similarity=0.323 Sum_probs=101.2
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+.+|.++.. .... ...||||+...++..|...|.. .|+.+..++|.+..++|..++++|+.+
T Consensus 316 ~K~~~l~~lyg-~~ti-gqsiIFc~tk~ta~~l~~~m~~------------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-- 379 (477)
T KOG0332|consen 316 DKYQALVNLYG-LLTI-GQSIIFCHTKATAMWLYEEMRA------------EGHQVSLLHGDLTVEQRAAIIDRFREG-- 379 (477)
T ss_pred hHHHHHHHHHh-hhhh-hheEEEEeehhhHHHHHHHHHh------------cCceeEEeeccchhHHHHHHHHHHhcC--
Confidence 47777777433 2222 3678999999999999999986 699999999999999999999999974
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCC------CcchHHHHHHHHHhhCCCCcEEEEEEec-CCCHH
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSW------NPTYDLQAIYRAWRYGQTKPVFAYRLMA-HGTME 921 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W------NP~~~~QAigR~~RiGQ~k~V~VyrLv~-~gTiE 921 (1138)
..+ +||+|.+.+.||+....+.||.||.|- .|.++.+||||.+|+|.+- + ++.|+- ..+++
T Consensus 380 -~~k-VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~-a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 380 -KEK-VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-L-AINLVDDKDSMN 447 (477)
T ss_pred -cce-EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-e-EEEeecccCcHH
Confidence 334 599999999999999999999999974 5678899999999999653 2 233554 34444
No 101
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=2.8e-10 Score=140.75 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=100.5
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..+|.+.+......|..|||||.+....+.|...|.. .|+++..++|.....+++.+..+|..
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~------------~gi~~~~Lna~~~~~Ea~ii~~ag~~-- 488 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDE------------AGIPHAVLNAKNHAKEAEIIMNAGQR-- 488 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH------------CCCCeeEecCCcHHHHHHHHHhcCCC--
Confidence 4589999999988888899999999999999999999997 68999999999886666666666654
Q ss_pred CCCceEEEeeccccccCCCcc---cCC-----EEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 856 NKRVKCTLISTRAGSLGINLH---SAN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt---~An-----~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
+. ++|+|..+|.|+++. +.. +||.++.+-|...+.|++||++|.|..-..
T Consensus 489 -g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 489 -GA---VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred -ce---EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 32 699999999999985 566 999999999999999999999999988444
No 102
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.31 E-value=5.3e-11 Score=136.90 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=91.6
Q ss_pred CeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCC
Q 001149 794 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 873 (1138)
Q Consensus 794 ~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GL 873 (1138)
..+|||+.+..--..|..+|.. +|++..-++++.+..+|..+-..|.+ ..+. .+++|.|.|.|+
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~------------kG~~a~pYHaGL~y~eRk~vE~~F~~---q~l~-~VVTTAAL~AGV 504 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTG------------KGLKAAPYHAGLPYKERKSVERAFAA---QELA-AVVTTAALAAGV 504 (830)
T ss_pred CceEEEecchhhHHHHHHHhhc------------CCcccccccCCCcHHHHHHHHHHHhc---CCcc-eEeehhhhhcCC
Confidence 4799999999999999999986 69999999999999999999999986 4444 588999999999
Q ss_pred CcccCCEEEE----EcCCC-CcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 874 NLHSANRVII----VDGSW-NPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 874 NLt~An~VIi----~D~~W-NP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
++++ +.||| |-..| +|....|..||++|.|-...=.||-++-.|
T Consensus 505 DFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 505 DFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9985 55655 44455 999999999999999988766777777544
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.30 E-value=2.9e-10 Score=144.09 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=90.0
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
+..+|||......++.+.+.|.... ..++.+..++|+++.++|++++..|.+ +..+ +|++|.+++.|
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~---------~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rk-VlvATnIAErs 278 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRV---------ASDVLLCPLYGALSLAEQQKAILPAPA---GRRK-VVLATNIAETS 278 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhc---------cCCceEEEeeCCCCHHHHHHHhccccC---CCeE-EEEecchHHhc
Confidence 5789999999999999999998511 136788999999999999999998875 3444 69999999999
Q ss_pred CCcccCCEEEEEcCC----CCcc--------------hHHHHHHHHHhhCCCCcEEEEEEecCCCH
Q 001149 873 INLHSANRVIIVDGS----WNPT--------------YDLQAIYRAWRYGQTKPVFAYRLMAHGTM 920 (1138)
Q Consensus 873 LNLt~An~VIi~D~~----WNP~--------------~~~QAigR~~RiGQ~k~V~VyrLv~~gTi 920 (1138)
|++.+.+.||.++.. |+|. ...||.||++|. .+=..|||+++...
T Consensus 279 LtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 279 LTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred ccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 999999999996654 3332 467888888886 47788999876543
No 104
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.29 E-value=5.3e-11 Score=136.41 Aligned_cols=97 Identities=21% Similarity=0.254 Sum_probs=89.2
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
..+.|||+++++.+..|.-+|..+ ++..+.++.+|.+++|-+-+++|.+.++ .+||.|++++.|
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L------------~i~p~~LHA~M~QKqRLknLEkF~~~~~----~VLiaTDVAARG 526 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNL------------DIPPLPLHASMIQKQRLKNLEKFKQSPS----GVLIATDVAARG 526 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhc------------CCCCchhhHHHHHHHHHHhHHHHhcCCC----eEEEeehhhhcc
Confidence 468999999999999999999974 7889999999999999999999998443 279999999999
Q ss_pred CCcccCCEEEEEcCCCCcchHHHHHHHHHhhCC
Q 001149 873 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQ 905 (1138)
Q Consensus 873 LNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ 905 (1138)
|++++..|||+|..|-..-.+++|-||.-|-+.
T Consensus 527 LDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 527 LDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred CCCCCcceEEEeecCCccceeEecccccccccC
Confidence 999999999999999999999999999999764
No 105
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.26 E-value=9.3e-10 Score=136.58 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=111.7
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
..+++..|++.|..+...|.++|||+.....++.|..+|.. .|+.+..++|.++..+|.+++..|..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~------------~gi~~~~lh~~~~~~eR~~~l~~fr~- 490 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE------------LGIKVRYLHSEIDTLERVEIIRDLRL- 490 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh------------hccceeeeeCCCCHHHHHHHHHHHhc-
Confidence 45788899999998888999999999999999999999986 58899999999999999999999986
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcC-----CCCcchHHHHHHHHHhhCCCCcEEEEEEecCCC--HHHHHHHH
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDG-----SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT--MEEKIYKR 927 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~-----~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT--iEekI~~r 927 (1138)
+.+. +|++|...+.|+++..++.||++|. +-+....+|++||+.|.. .- .++-|+...| |...|.+.
T Consensus 491 --G~i~-VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 491 --GEFD-VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred --CCce-EEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 4554 5789999999999999999999994 557889999999999974 22 3444554443 55555554
No 106
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.26 E-value=1.1e-11 Score=111.63 Aligned_cols=73 Identities=34% Similarity=0.491 Sum_probs=68.0
Q ss_pred CCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhC
Q 001149 828 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYG 904 (1138)
Q Consensus 828 ~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiG 904 (1138)
.++.+..++|+++..+|..+++.|+++.. .+|++|.++++|+|++.++.||+++++||+..+.|++||++|.|
T Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~----~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 10 LGIKVARLHGGLSQEEREEILEKFNNGKI----KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCC----eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 47899999999999999999999997432 57899999999999999999999999999999999999999987
No 107
>PRK14701 reverse gyrase; Provisional
Probab=99.25 E-value=1.5e-09 Score=144.89 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcch---HHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 780 VLLLDILTMCSNMGDKSLVFSQSIPT---LDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 780 ~~L~eiL~~~~~~g~KvLVFSq~~~~---ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
..|.++|+.. |..+|||++.... ++.|..+|.. .|++...++|. |.+.+++|.+
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~------------~Gi~a~~~h~~-----R~~~l~~F~~--- 376 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLE------------DGFKIELVSAK-----NKKGFDLFEE--- 376 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHH------------CCCeEEEecch-----HHHHHHHHHc---
Confidence 3566666653 6789999998765 4788888886 68999999984 8999999996
Q ss_pred CCceEEEeec----cccccCCCccc-CCEEEEEcCCC---CcchHHH-------------HHHHHHhhCCC
Q 001149 857 KRVKCTLIST----RAGSLGINLHS-ANRVIIVDGSW---NPTYDLQ-------------AIYRAWRYGQT 906 (1138)
Q Consensus 857 ~~v~v~LiST----kaGg~GLNLt~-An~VIi~D~~W---NP~~~~Q-------------AigR~~RiGQ~ 906 (1138)
+++.| |++| .+++.|||++. ...||+||.|- |.-.+.| .+||++|-|..
T Consensus 377 G~~~V-LVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 377 GEIDY-LIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCCCE-EEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 55665 5555 57899999997 89999999987 5544444 45888887764
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=3.9e-09 Score=131.23 Aligned_cols=119 Identities=20% Similarity=0.158 Sum_probs=102.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+.++.+.+..+...|..|||||.+....+.|...|.. .|+++..++|. ..+|+..+.+|...+
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~------------~gi~~~vLnak--q~eREa~Iia~Ag~~ 478 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKK------------AGIPHNVLNAK--NHEREAEIIAQAGRP 478 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCceEeccCc--hHHHHHHHHHhcCCC
Confidence 4699999999998888899999999999999999999997 68999999996 679999999998632
Q ss_pred CCCceEEEeeccccccCCCcc-c-------------------------------------CCEEEEEcCCCCcchHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLH-S-------------------------------------ANRVIIVDGSWNPTYDLQAI 897 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt-~-------------------------------------An~VIi~D~~WNP~~~~QAi 897 (1138)
. -++|+|..+|.|+++. + .=+||.-..+=|--.+.|..
T Consensus 479 ---g-~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~Qlr 554 (830)
T PRK12904 479 ---G-AVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLR 554 (830)
T ss_pred ---c-eEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhh
Confidence 2 2699999999998865 2 45899999999999999999
Q ss_pred HHHHhhCCCCcEEEE
Q 001149 898 YRAWRYGQTKPVFAY 912 (1138)
Q Consensus 898 gR~~RiGQ~k~V~Vy 912 (1138)
||++|.|..-....|
T Consensus 555 GRagRQGdpGss~f~ 569 (830)
T PRK12904 555 GRSGRQGDPGSSRFY 569 (830)
T ss_pred cccccCCCCCceeEE
Confidence 999999998555444
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.1e-08 Score=127.11 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=103.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..++++-+..+.+.|..||||+.+....+.|..+|.. .|+.+..+++..+..+|..+.+.|+.
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~------------~gi~~~vLnak~~~~Ea~ii~~Ag~~-- 497 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK------------EKIPHEVLNAKFHEREAEIVAQAGRT-- 497 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCeEeccCcccHHHHHHHHhCCCC--
Confidence 5689999999999989999999999999999999999997 68999999999999999999999986
Q ss_pred CCCceEEEeeccccccCCCcc-------------------------------------cCCEEEEEcCCCCcchHHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLH-------------------------------------SANRVIIVDGSWNPTYDLQAIY 898 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt-------------------------------------~An~VIi~D~~WNP~~~~QAig 898 (1138)
+. ++|+|..+|.|+++. +.=+||.-+.+=|--.|.|..|
T Consensus 498 -G~---VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrG 573 (908)
T PRK13107 498 -GA---VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRG 573 (908)
T ss_pred -Cc---EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhc
Confidence 33 599999999999966 3348999999999999999999
Q ss_pred HHHhhCCCCcE
Q 001149 899 RAWRYGQTKPV 909 (1138)
Q Consensus 899 R~~RiGQ~k~V 909 (1138)
|++|.|..-..
T Consensus 574 RaGRQGDPGss 584 (908)
T PRK13107 574 RAGRQGDAGSS 584 (908)
T ss_pred ccccCCCCCce
Confidence 99999987443
No 110
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=3.1e-09 Score=120.97 Aligned_cols=126 Identities=25% Similarity=0.305 Sum_probs=109.0
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+..|++-|..... ..+||||..-....+-|...|.- +|+++..++|++.+.+|.+.+..|+...
T Consensus 453 ~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lkl------------k~~~v~llhgdkdqa~rn~~ls~fKkk~- 518 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKL------------KGFNVSLLHGDKDQAERNEVLSKFKKKR- 518 (731)
T ss_pred HHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhcc------------ccceeeeecCchhhHHHHHHHHHHhhcC-
Confidence 478888887777654 45999999999999999999874 7999999999999999999999999732
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
.. +|+.|.+...|+++....+||+||.--.-....|+|||..|-|-+ =..|.||++-..+
T Consensus 519 --~~-VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 519 --KP-VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred --Cc-eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 22 688999999999999999999999998888999999999999987 5678888876554
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=2.4e-08 Score=124.49 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=99.4
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+.+|++.+......|..||||+.+....+.|..+|.. .|+++..|++ ...+|+..|-+|....
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~------------~gI~h~vLna--kq~~REa~Iia~AG~~ 646 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRA------------KRIAHNVLNA--KQHDREAEIVAEAGQK 646 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHH------------cCCCceeecC--CHHHhHHHHHHhcCCC
Confidence 4599999999998888899999999999999999999996 6899999997 5779999999998632
Q ss_pred CCCceEEEeeccccccCCCcc---cCC-----EEEEEcCCCCcchHHHHHHHHHhhCCCCc
Q 001149 856 NKRVKCTLISTRAGSLGINLH---SAN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKP 908 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt---~An-----~VIi~D~~WNP~~~~QAigR~~RiGQ~k~ 908 (1138)
. -++|+|..+|.|+++. ++. +||.++.+-+...+.|++||++|.|..-.
T Consensus 647 ---g-~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGs 703 (1025)
T PRK12900 647 ---G-AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGE 703 (1025)
T ss_pred ---C-eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcc
Confidence 2 2699999999999988 332 45888889999999999999999998843
No 112
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=8.6e-11 Score=126.78 Aligned_cols=113 Identities=21% Similarity=0.339 Sum_probs=95.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
+-|+.-|-.++..+. =...||||+++...++|..-+.. -|+..+.++..|.++.|.++...|.+
T Consensus 307 ~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITe------------lGyscyyiHakM~Q~hRNrVFHdFr~-- 370 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITE------------LGYSCYYIHAKMAQEHRNRVFHDFRN-- 370 (459)
T ss_pred hhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHh------------ccchhhHHHHHHHHhhhhhhhhhhhc--
Confidence 344444444444331 24679999999999999998887 48889999999999999999999996
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 906 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~ 906 (1138)
+.++ .|+.|+..-.||+.++.|.||.||.+-|+..+..+|||.+|+|--
T Consensus 371 -G~cr-nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 371 -GKCR-NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred -cccc-eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 6676 478889999999999999999999999999999999999999964
No 113
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.14 E-value=1e-08 Score=125.80 Aligned_cols=164 Identities=16% Similarity=0.240 Sum_probs=102.4
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc------cCCCceEEEeCc-chHH----HHHHHHHHHCCCCCCCeEEEE
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN------LGLRTALIVTPV-NVLH----NWKQEFMKWRPSELKPLRVFM 477 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~------~~~k~vLIV~P~-sll~----qW~~E~~kw~p~~~~~l~V~~ 477 (1138)
....++|++..+|.|||..|...|...+.... .+.-+++.|+|. +|.. +|...|.-| .+.|..
T Consensus 124 ~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~------gi~v~E 197 (1230)
T KOG0952|consen 124 KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL------GISVRE 197 (1230)
T ss_pred cCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc------cceEEE
Confidence 56789999999999999988777776665411 123478899995 4433 344333322 378888
Q ss_pred ecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCccc-----HHH
Q 001149 478 LEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRA-----DTT 552 (1138)
Q Consensus 478 ~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~S-----~~s 552 (1138)
+.|.....+.++ ...+|+|+|++.+--.+.. ...+. .+.....+||+||.|.+..+.. -.+
T Consensus 198 LTGD~ql~~tei-----~~tqiiVTTPEKwDvvTRk-~~~d~--------~l~~~V~LviIDEVHlLhd~RGpvlEtiVa 263 (1230)
T KOG0952|consen 198 LTGDTQLTKTEI-----ADTQIIVTTPEKWDVVTRK-SVGDS--------ALFSLVRLVIIDEVHLLHDDRGPVLETIVA 263 (1230)
T ss_pred ecCcchhhHHHH-----HhcCEEEecccceeeeeee-eccch--------hhhhheeeEEeeeehhhcCcccchHHHHHH
Confidence 888765555552 3568999999988543321 11111 1223567899999999987653 334
Q ss_pred HHHHhc----ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHH
Q 001149 553 QALKQV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFR 597 (1138)
Q Consensus 553 kal~~l----~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~ 597 (1138)
+.++.. ..-|.++||||- . | |-.+-.||+.++....-.|.
T Consensus 264 Rtlr~vessqs~IRivgLSATl-P-N---~eDvA~fL~vn~~~glfsFd 307 (1230)
T KOG0952|consen 264 RTLRLVESSQSMIRIVGLSATL-P-N---YEDVARFLRVNPYAGLFSFD 307 (1230)
T ss_pred HHHHHHHhhhhheEEEEeeccC-C-C---HHHHHHHhcCCCccceeeec
Confidence 444333 456789999994 2 2 33345666655433333333
No 114
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.13 E-value=3.7e-08 Score=108.19 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCce
Q 001149 781 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 860 (1138)
Q Consensus 781 ~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~ 860 (1138)
.|...|+.....|..++||...+.++.-+...|+... .......++... ..|.+.+.+|++ +.+.
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~----------~~~~i~~Vhs~d--~~R~EkV~~fR~---G~~~ 357 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL----------PKETIASVHSED--QHRKEKVEAFRD---GKIT 357 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC----------CccceeeeeccC--ccHHHHHHHHHc---CceE
Confidence 4567777777889999999999999999999996411 122333444443 489999999996 4554
Q ss_pred EEEeeccccccCCCcccCCEEEEEcCC--CCcchHHHHHHHHHhhCCC--CcEEEEEE
Q 001149 861 CTLISTRAGSLGINLHSANRVIIVDGS--WNPTYDLQAIYRAWRYGQT--KPVFAYRL 914 (1138)
Q Consensus 861 v~LiSTkaGg~GLNLt~An~VIi~D~~--WNP~~~~QAigR~~RiGQ~--k~V~VyrL 914 (1138)
+||+|.....|+.+...+..|+=.-. ++-+..+|.-||++|--.. -.|..|++
T Consensus 358 -lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 358 -LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred -EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 68999999999999999988875544 8889999999999996433 34554444
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.13 E-value=1.3e-08 Score=127.31 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=106.3
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
..+++..|++.|..+...|.++|||+.....++.|..+|.. .|+.+..++|.++..+|..++..|..
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~------------~gi~~~~~h~~~~~~~R~~~l~~f~~- 494 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE------------LGIKVRYLHSDIDTLERVEIIRDLRL- 494 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh------------cceeEEEEECCCCHHHHHHHHHHHHc-
Confidence 35678899999999888899999999999999999999986 68999999999999999999999985
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcC-----CCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDG-----SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~-----~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
+.+. +|++|...+.|+++..++.||++|. +-++..+.|++||++|. . .-.++.|+..
T Consensus 495 --g~i~-vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 495 --GEFD-VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred --CCce-EEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 4454 5789999999999999999999996 45888999999999994 2 2235555553
No 116
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.10 E-value=1.5e-09 Score=116.14 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=104.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc-ccCCCceEEEeCc-chHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV-NLGLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~-~~~~k~vLIV~P~-sll~qW~ 459 (1138)
.+++||.+++..+. .+.+.++...+|.|||+.++..+...+... .....++|||+|. .++.||.
T Consensus 21 ~~~~~Q~~~~~~~~--------------~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~ 86 (203)
T cd00268 21 KPTPIQARAIPPLL--------------SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIA 86 (203)
T ss_pred CCCHHHHHHHHHHh--------------cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHH
Confidence 47899999998763 357899999999999998655544444332 1123579999995 4778999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
+.+..+... ..+.+..+.+....... ...+....+|+|+|.+.+........ .....++++|+|
T Consensus 87 ~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~------------~~~~~l~~lIvD 150 (203)
T cd00268 87 EVARKLGKH--TNLKVVVIYGGTSIDKQ--IRKLKRGPHIVVATPGRLLDLLERGK------------LDLSKVKYLVLD 150 (203)
T ss_pred HHHHHHhcc--CCceEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCC------------CChhhCCEEEEe
Confidence 999998754 23566666554332211 22333467899999887654321110 111267899999
Q ss_pred CCcccCCcc-cH-HHHHHHhc-ccCeEEEEecCCC
Q 001149 540 EAHMIKNTR-AD-TTQALKQV-KCQRRIALTGSPL 571 (1138)
Q Consensus 540 EaH~iKN~~-S~-~skal~~l-~~~~RllLTGTPl 571 (1138)
|+|.+.+.. .. ....+..+ .....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986443 12 22233344 3577899999995
No 117
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.06 E-value=4.7e-09 Score=129.75 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=104.1
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+..|.++|.+..+ ..++|||++...-++.|.+-|.+ .|+....++|..+..+|...+..|++.
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~------------ag~~~~slHGgv~q~dR~sti~dfK~~- 662 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQK------------AGYNCDSLHGGVDQHDRSSTIEDFKNG- 662 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHh------------cCcchhhhcCCCchHHHHhHHHHHhcc-
Confidence 5699999999998766 78999999999999999998886 688888899999999999999999973
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
.+ .+|+.|.+.+.||+...-..||+||.+---..+..|.||..|-|-+- +-|.|+..
T Consensus 663 --~~-~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 663 --VV-NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred --Cc-eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 33 37899999999999999999999999766666777777777777665 55556655
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.05 E-value=1.5e-09 Score=112.35 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHHHHH
Q 001149 385 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQEFM 463 (1138)
Q Consensus 385 phQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~E~~ 463 (1138)
|+|.+++.-+. .+...++...+|.|||..++..+...+.... ...+||++|. .++.|-.+++.
T Consensus 2 ~~Q~~~~~~i~--------------~~~~~li~aptGsGKT~~~~~~~l~~~~~~~--~~~~lii~P~~~l~~q~~~~~~ 65 (169)
T PF00270_consen 2 PLQQEAIEAII--------------SGKNVLISAPTGSGKTLAYILPALNRLQEGK--DARVLIIVPTRALAEQQFERLR 65 (169)
T ss_dssp HHHHHHHHHHH--------------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTS--SSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------cCCCEEEECCCCCccHHHHHHHHHhhhccCC--CceEEEEeeccccccccccccc
Confidence 78999987663 2466999999999999998877766554432 3489999995 57888999999
Q ss_pred HHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcc
Q 001149 464 KWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHM 543 (1138)
Q Consensus 464 kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~ 543 (1138)
+++.. ..+++..+.+........ ........+|+|+|++.|......... .+ ...++||+||+|.
T Consensus 66 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~ilv~T~~~l~~~~~~~~~-----------~~-~~~~~iViDE~h~ 130 (169)
T PF00270_consen 66 KFFSN--TNVRVVLLHGGQSISEDQ-REVLSNQADILVTTPEQLLDLISNGKI-----------NI-SRLSLIVIDEAHH 130 (169)
T ss_dssp HHTTT--TTSSEEEESTTSCHHHHH-HHHHHTTSSEEEEEHHHHHHHHHTTSS-----------TG-TTESEEEEETHHH
T ss_pred ccccc--cccccccccccccccccc-cccccccccccccCcchhhcccccccc-----------cc-ccceeeccCcccc
Confidence 99875 235566655543322111 111134689999999998653211000 11 2478999999999
Q ss_pred cCCc--ccHHHHHHHhc---ccCeEEEEecCCCCCChh
Q 001149 544 IKNT--RADTTQALKQV---KCQRRIALTGSPLQNNLM 576 (1138)
Q Consensus 544 iKN~--~S~~skal~~l---~~~~RllLTGTPlqNnl~ 576 (1138)
+-.. .......+..+ ...+.+++||||- .++.
T Consensus 131 l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 131 LSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 8652 22333334444 3467999999996 4444
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.04 E-value=2.3e-08 Score=129.97 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
....+|||......++.+.+.|.... ..++.++-++|+++.++|++++..+. . +-+|+||.+++.
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~---------~~~~~VlpLhg~Ls~~eQ~~vf~~~~----~--rkIVLATNIAEt 342 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRN---------LRHTEILPLYARLSNKEQQRVFQPHS----G--RRIVLATNVAET 342 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcC---------CCCcEEEeccCCCCHHHHHHHhCCCC----C--ceEEEeccHHHh
Confidence 34689999999999999999998631 13567889999999999998854331 1 236899999999
Q ss_pred CCCcccCCEEEEEcCC----C--------------CcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 872 GINLHSANRVIIVDGS----W--------------NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 872 GLNLt~An~VIi~D~~----W--------------NP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
||++.+..+||-++.. + +.+...||.||++|.| +=..|||+++...+
T Consensus 343 SLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 343 SLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred ccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 9999999999987631 2 3357889999999987 66788999866443
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.04 E-value=2e-08 Score=127.34 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=102.8
Q ss_pred HhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC--CCCCceEEEee
Q 001149 788 MCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP--LNKRVKCTLIS 865 (1138)
Q Consensus 788 ~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~--~n~~v~v~LiS 865 (1138)
.....|.||+|-++.+..+..+...|+.. +.+++.+++......|.+.++...+- .+. ..++|+
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~------------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~--~~IvVa 500 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEK------------GPKVLLLHSRFTLKDREEKERELKKLFKQNE--GFIVVA 500 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhc------------CCCEEEEecccchhhHHHHHHHHHHHHhccC--CeEEEE
Confidence 33456899999999999999999999862 33799999999999999998865421 111 237999
Q ss_pred ccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhC--CCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 001149 866 TRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYG--QTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARV 938 (1138)
Q Consensus 866 TkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiG--Q~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~v 938 (1138)
|++...|+|+. .+.+| -|+. -....+||.||++|.| ....++||...-.+....+.|+....+.......
T Consensus 501 TQVIEagvDid-fd~mI-Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (733)
T COG1203 501 TQVIEAGVDID-FDVLI-TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEEL 572 (733)
T ss_pred eeEEEEEeccc-cCeee-ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccccc
Confidence 99999999998 44444 3432 2446789999999999 5678899988888888888888777765544433
No 121
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.03 E-value=3.6e-09 Score=119.06 Aligned_cols=219 Identities=20% Similarity=0.162 Sum_probs=125.3
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhcccccc-----cchH--------HHHhhHHHHHHHHHHHhcCccccccccccCCCC
Q 001149 651 TVFVITVKLSPLQRRLYKRFLDLHGFTNDR-----VSNE--------KIRKSFFAGYQALAQIWNHPGILQLTKDKGYPS 717 (1138)
Q Consensus 651 ~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~-----~~~~--------~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~ 717 (1138)
.++.+.++|+..|+++|+.++..+...... .... .....+...+..|+.+|+||.|+.........
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~l- 82 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQL- 82 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccc-
Confidence 478899999999999999887643211110 0111 11245667788999999999987432111000
Q ss_pred CccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHh-----hcC
Q 001149 718 REDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC-----SNM 792 (1138)
Q Consensus 718 ~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~-----~~~ 792 (1138)
+..+........|+|+.+|-++|..+ ...
T Consensus 83 ----------------------------------------------l~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~ 116 (297)
T PF11496_consen 83 ----------------------------------------------LLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREY 116 (297)
T ss_dssp -----------------------------------------------STTHHHHHHHT-HHHHHHHHHHHHH-----TTS
T ss_pred ----------------------------------------------ccchHHHHHHHcCchHHHHHHHHHHHHhhhcccC
Confidence 00001111235699999999999998 556
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHH------------HHHcCCCCCCce
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV------------ERFNEPLNKRVK 860 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i------------~~Fn~~~n~~v~ 860 (1138)
+-++||.++...++|+||.+|.- +++.|-|++|..-..+....- ..........+.
T Consensus 117 ~~~ilIv~~~~k~ldllE~~llG------------k~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (297)
T PF11496_consen 117 PLHILIVSRSGKELDLLEGLLLG------------KKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVW 184 (297)
T ss_dssp SEEEEEEE-STHHHHHHHHHHTT------------SSSEEEESSS--S--S---S----------------------SEE
T ss_pred CceEEEEecCccHHHHHHHHHcc------------CCeeEEecCCCCCcCccccCCcccccccccccccccccccccceE
Confidence 77999999999999999999974 689999999976544333222 222333345677
Q ss_pred EEEeecccccc----CCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHH
Q 001149 861 CTLISTRAGSL----GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQV 929 (1138)
Q Consensus 861 v~LiSTkaGg~----GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~ 929 (1138)
|+|+++.-... .++-...+.||-||+.+++....-..-|..--.+ +.+-|+|||..+|+|--+.....
T Consensus 185 i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 185 IHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp EEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred EEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 88888875544 2334467899999999999887655545433223 89999999999999998876554
No 122
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.98 E-value=3.3e-09 Score=117.23 Aligned_cols=257 Identities=18% Similarity=0.238 Sum_probs=152.6
Q ss_pred ccCCchh--hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 373 VRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 373 ~~vp~~l--~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
..+|..+ ...|=.-|+++|-+.-+...+.+ ......|.+|+|.+|.||..|+.++|......+. .+++-|-+
T Consensus 26 ~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~L----p~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~ 99 (303)
T PF13872_consen 26 LHLPEEVIDSGLLSALQLEAVIYACQRHEQIL----PGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSV 99 (303)
T ss_pred cCCCHHHHhcccccHHHHHHHHHHHHHHHhhc----ccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEEC
Confidence 3566643 45789999999998866543322 3346789999999999999999999988776653 23555555
Q ss_pred CcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhc
Q 001149 451 PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 530 (1138)
Q Consensus 451 P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~ 530 (1138)
...|...=.+.+.--... .+.+..+...+.... ..-..||+.+||..++.-.... .+.......+..++.
T Consensus 100 s~dL~~Da~RDl~DIG~~---~i~v~~l~~~~~~~~------~~~~~GvlF~TYs~L~~~~~~~-~~~~sRl~ql~~W~g 169 (303)
T PF13872_consen 100 SNDLKYDAERDLRDIGAD---NIPVHPLNKFKYGDI------IRLKEGVLFSTYSTLISESQSG-GKYRSRLDQLVDWCG 169 (303)
T ss_pred ChhhhhHHHHHHHHhCCC---cccceechhhccCcC------CCCCCCccchhHHHHHhHHhcc-CCccchHHHHHHHHh
Confidence 566766655555533222 244444333221111 1135689999999987653221 122333445555554
Q ss_pred cCCC-EEEEcCCcccCCccc------HHHHHHHhc----ccCeEEEEecCCCCCChhHHHHHhhhhccCCC------CCh
Q 001149 531 DGPD-ILVCDEAHMIKNTRA------DTTQALKQV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFL------GSS 593 (1138)
Q Consensus 531 ~~~d-lVIlDEaH~iKN~~S------~~skal~~l----~~~~RllLTGTPlqNnl~El~~ll~fL~p~~l------g~~ 593 (1138)
..|| +||+||+|+.||..+ ++..++..| ..-|.+-.|||...+ +.. |.-+.+-+++ .+.
T Consensus 170 ~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~N---maYm~RLGLWG~gtpf~~~ 245 (303)
T PF13872_consen 170 EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRN---MAYMSRLGLWGPGTPFPDF 245 (303)
T ss_pred cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cce---eeeeeeccccCCCCCCCCH
Confidence 5454 789999999999755 566666555 455789999999742 222 2222333344 344
Q ss_pred HHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHH--HhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHH
Q 001149 594 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQ--LKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRF 670 (1138)
Q Consensus 594 ~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~--L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~ 670 (1138)
.+|.+.+. .+... . ..++-.. ..+...+|.. .+-.-...++.++|++.|.++|+.|
T Consensus 246 ~~f~~a~~----~gGv~--------a----mE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~~ 303 (303)
T PF13872_consen 246 DDFLEAME----KGGVG--------A----MEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDAY 303 (303)
T ss_pred HHHHHHHH----hcCch--------H----HHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcCC
Confidence 55544433 22211 0 0111111 1233334433 2444566788899999999999753
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.96 E-value=6.4e-07 Score=103.74 Aligned_cols=138 Identities=19% Similarity=0.191 Sum_probs=112.5
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
.+-+.-|+.-++...+.++|+||-+-...|++-|.+||.. .|+++..++.....-+|.++|...+.
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e------------~gikv~YlHSdidTlER~eIirdLR~-- 494 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE------------LGIKVRYLHSDIDTLERVEIIRDLRL-- 494 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh------------cCceEEeeeccchHHHHHHHHHHHhc--
Confidence 3456666666666677899999999999999999999997 69999999999999999999999996
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCC-----CcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-----NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVT 930 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-----NP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~ 930 (1138)
+.+. +|+.....-+||+|+.+.-|.|+|.+- +-...+|-||||-|--.. .|..|-=...++|++.|-+...+
T Consensus 495 -G~~D-vLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 495 -GEFD-VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred -CCcc-EEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 4454 588899999999999999999999974 788999999999995433 35555444556777777655443
No 124
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.94 E-value=8.6e-08 Score=124.37 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
...++|||......++.+.+.|.... .....++-++|+++.++|.++++.+ +..+ +|++|.+++.
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~---------~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rk-IIVATNIAEt 349 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLN---------LRHTEILPLYARLSNSEQNRVFQSH-----SGRR-IVLATNVAET 349 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcC---------CCcceEeecccCCCHHHHHHHhccc-----CCee-EEEeccHHhh
Confidence 35689999999999999999998631 1234577899999999999886642 2333 6899999999
Q ss_pred CCCcccCCEEEEEc---------------CCCCc---chHHHHHHHHHhhCCCCcEEEEEEecCCCH
Q 001149 872 GINLHSANRVIIVD---------------GSWNP---TYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 920 (1138)
Q Consensus 872 GLNLt~An~VIi~D---------------~~WNP---~~~~QAigR~~RiGQ~k~V~VyrLv~~gTi 920 (1138)
||++.+.++||.++ .+-.| +...||.||++|. .+=..|+|+++...
T Consensus 350 SITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 350 SLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 99999999999874 22223 5678888888887 35678899876543
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.93 E-value=9.4e-07 Score=107.83 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=95.7
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..++++-+..+.+.|..|||.+.++..-+.|...|.+ .|++...++.... ++-..+|.+=-.
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~------------~gI~h~vLNAk~~-~~EA~IIa~AG~-- 474 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRA------------AGVPAVVLNAKND-AEEARIIAEAGK-- 474 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh------------CCCcceeeccCch-HhHHHHHHhcCC--
Confidence 4589999999988888999999999999999999999997 6899999988744 333455554322
Q ss_pred CCCceEEEeeccccccCCCcc---------------cCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 856 NKRVKCTLISTRAGSLGINLH---------------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt---------------~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
..-+-|+|.-+|.|.++. +.=+||....+-|-..+.|..||++|.|..-....|
T Consensus 475 ---~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 475 ---YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred ---CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 223688999999998865 345899999999999999999999999988554443
No 126
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=98.93 E-value=2.8e-08 Score=111.94 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=99.7
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
--|+.++.-+|+--. ...|.|||.+.+..-..|.-||.. .|++.+.+.|.++...|..+|++||.
T Consensus 252 ~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeq------------FGiksciLNseLP~NSR~Hii~QFNk-- 316 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQ------------FGIKSCILNSELPANSRCHIIEQFNK-- 316 (569)
T ss_pred chhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHH------------hCcHhhhhcccccccchhhHHHHhhC--
Confidence 347777777776422 357999999999999999999986 69999999999999999999999997
Q ss_pred CCCceEEEeecc--------------------------c---------cccCCCcccCCEEEEEcCCCCcchHHHHHHHH
Q 001149 856 NKRVKCTLISTR--------------------------A---------GSLGINLHSANRVIIVDGSWNPTYDLQAIYRA 900 (1138)
Q Consensus 856 n~~v~v~LiSTk--------------------------a---------Gg~GLNLt~An~VIi~D~~WNP~~~~QAigR~ 900 (1138)
+-+.+ ||.|+ + .+.||+++..+.||.||.|-++..+++|+||.
T Consensus 317 -G~Ydi-vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRT 394 (569)
T KOG0346|consen 317 -GLYDI-VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRT 394 (569)
T ss_pred -cceeE-EEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccc
Confidence 44554 44444 1 24799999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEEecC
Q 001149 901 WRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 901 ~RiGQ~k~V~VyrLv~~ 917 (1138)
.|-|.+-.+. -|+..
T Consensus 395 aRg~n~Gtal--Sfv~P 409 (569)
T KOG0346|consen 395 ARGNNKGTAL--SFVSP 409 (569)
T ss_pred ccCCCCCceE--EEecc
Confidence 9988765443 34443
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=9.7e-07 Score=110.28 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=94.0
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..++++-+......|..|||-+.++..-+.|..+|.. .|+.+..++.... ..-..+|.+=-.
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~------------~gi~h~vLNak~~-~~Ea~iia~AG~-- 615 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQ------------NRIEHTVLNAKNH-AQEAEIIAGAGK-- 615 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH------------cCCcceecccchh-hhHHHHHHhcCC--
Confidence 4688999998888888999999999999999999999986 6888888887643 222344444222
Q ss_pred CCCceEEEeeccccccCCCcc--------cCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 856 NKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt--------~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
.+ -+-|+|..+|.|.++. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 616 ~g---~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 616 LG---AVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred CC---cEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 22 3588999999998754 345899999999999999999999999988554333
No 128
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.88 E-value=4.1e-08 Score=124.38 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=97.2
Q ss_pred cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccc
Q 001149 791 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 870 (1138)
Q Consensus 791 ~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg 870 (1138)
..+.-.||||.+..+.+.+...|.. .|+....++++++..+|+.+-..|..+ .++ +++.|=|-|
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~------------~~~~a~~YHAGl~~~~R~~Vq~~w~~~---~~~-VivATVAFG 546 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRS------------LGKSAAFYHAGLPPKERETVQKAWMSD---KIR-VIVATVAFG 546 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHH------------hchhhHhhhcCCCHHHHHHHHHHHhcC---CCe-EEEEEeecc
Confidence 3477899999999999999999997 578889999999999999999999973 465 467778999
Q ss_pred cCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEe
Q 001149 871 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLM 915 (1138)
Q Consensus 871 ~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv 915 (1138)
-|||-....-||+|..|-+---+-|-.|||+|-|+...|..|+=.
T Consensus 547 MGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 547 MGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred CCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 999999999999999999999999999999999999887776533
No 129
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.6e-08 Score=108.69 Aligned_cols=119 Identities=22% Similarity=0.284 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|+..|.++.. .-...+||++...-++.|...|.. .|+....++|.+...+|..+...|+.+
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~------------~~~~~s~~~~d~~q~~R~~~~~ef~~g--- 312 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRA------------HGFTVSAIHGDMEQNERDTLMREFRSG--- 312 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhh------------CCceEEEeecccchhhhhHHHHHhhcC---
Confidence 7777777776 345789999999999999999965 689999999999999999999999974
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
..+ +||+|...+.|++++...-||.||.|-|+.++..++||++|+|-+ -.+..++++.
T Consensus 313 ssr-vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~ 370 (397)
T KOG0327|consen 313 SSR-VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEE 370 (397)
T ss_pred Cce-EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHh
Confidence 344 589999999999999999999999999999999999999999965 2333445443
No 130
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.81 E-value=6.3e-08 Score=108.78 Aligned_cols=124 Identities=20% Similarity=0.200 Sum_probs=105.6
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..+|+.++..... .+..+||......+.++...|.. .|+....+.|++.+..|..-+..|+...
T Consensus 245 a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~------------~g~~~s~iysslD~~aRk~~~~~F~~~k 311 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRD------------FGGEGSDIYSSLDQEARKINGRDFRGRK 311 (529)
T ss_pred HHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHh------------cCCCccccccccChHhhhhccccccCCc
Confidence 4578888888887554 56899999999999999999986 6888888999999999999999998643
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
. -+|++|+++..|++.+.-+.||.||.+-.+.....|+||+.|-|.+ -..|-||+..
T Consensus 312 ~----~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 312 T----SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred c----ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 2 2699999999999999999999999999999999999999998865 3445565543
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=3.9e-06 Score=104.92 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=94.2
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
...|..++++-+..+...|..|||-+.++..-+.|..+|.. .|+++-.++.... ++-..+|.+ .+
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~------------~gi~h~VLNAk~~-~~EA~IIa~--AG 495 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKK------------EGIEHKVLNAKYH-EKEAEIIAQ--AG 495 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHH------------cCCcHHHhccccc-hhHHHHHHc--CC
Confidence 35699999999999999999999999999999999999997 5777777766543 223344443 22
Q ss_pred CCCCceEEEeeccccccCCCcc-------------------------------------cCCEEEEEcCCCCcchHHHHH
Q 001149 855 LNKRVKCTLISTRAGSLGINLH-------------------------------------SANRVIIVDGSWNPTYDLQAI 897 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt-------------------------------------~An~VIi~D~~WNP~~~~QAi 897 (1138)
..+ -+-|+|.-+|.|.++. +.=+||.-..+=|--.|.|..
T Consensus 496 ~~G---aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLr 572 (913)
T PRK13103 496 RPG---ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLR 572 (913)
T ss_pred CCC---cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 122 3588999999998874 345899999999999999999
Q ss_pred HHHHhhCCCCcEEEE
Q 001149 898 YRAWRYGQTKPVFAY 912 (1138)
Q Consensus 898 gR~~RiGQ~k~V~Vy 912 (1138)
||++|.|..-....|
T Consensus 573 GRaGRQGDPGsS~f~ 587 (913)
T PRK13103 573 GRAGRQGDPGSSRFY 587 (913)
T ss_pred cccccCCCCCceEEE
Confidence 999999988544433
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.72 E-value=6.7e-07 Score=111.45 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=96.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcc-------cCCCceEEEeC-cchHHHHHHHHHHHCCCCCCCeEEEEecCc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVN-------LGLRTALIVTP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDV 481 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~-------~~~k~vLIV~P-~sll~qW~~E~~kw~p~~~~~l~V~~~~~~ 481 (1138)
...+.+|+..+|.|||-.|+.-+..-+..+. ...-.+.-|+| ..|+..|...|.+|+.. ..+.|....+.
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~--~GI~V~ElTgD 401 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAP--LGITVLELTGD 401 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccc--cCcEEEEeccc
Confidence 3467889999999999887766554443321 12235777888 67899999999999864 23555555554
Q ss_pred chhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCccc---CCcc--cHHHHHHH
Q 001149 482 SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI---KNTR--ADTTQALK 556 (1138)
Q Consensus 482 ~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~i---KN~~--S~~skal~ 556 (1138)
....+.++ ....|+++|.+-+-.++.... +..+. .-+.++|+||.|.+ |++. |-..+..+
T Consensus 402 ~~l~~~qi-----eeTqVIV~TPEK~DiITRk~g--draY~--------qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r 466 (1674)
T KOG0951|consen 402 SQLGKEQI-----EETQVIVTTPEKWDIITRKSG--DRAYE--------QLVRLLIIDEIHLLHDDRGPVLESIVARTFR 466 (1674)
T ss_pred ccchhhhh-----hcceeEEeccchhhhhhcccC--chhHH--------HHHHHHhhhhhhhcccccchHHHHHHHHHHH
Confidence 33222222 345688888887643322111 11111 13457899999999 4432 22334444
Q ss_pred hc----ccCeEEEEecCCCCCChhHHHHHhhhhccCCC
Q 001149 557 QV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 590 (1138)
Q Consensus 557 ~l----~~~~RllLTGTPlqNnl~El~~ll~fL~p~~l 590 (1138)
+. ...+.++||||- -|..|..+.+..-.+++|
T Consensus 467 ~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 467 RSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred HhhhcccCceeeeecccC--CchhhhHHHhccCccccc
Confidence 43 356789999995 345555553332224443
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.57 E-value=7.2e-06 Score=106.31 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=57.7
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+.++|||..+..+++.+...|..... ..++.. +..... ..|.+++++|++..+ -+|++|....+
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~--------~~~~~~--l~q~~~-~~r~~ll~~F~~~~~----~iLlgt~sf~E 737 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPE--------FEGYEV--LAQGIN-GSRAKIKKRFNNGEK----AILLGTSSFWE 737 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhcc--------ccCceE--EecCCC-ccHHHHHHHHHhCCC----eEEEEcceeec
Confidence 457899999999999999999874210 123332 222222 478999999987422 25778899999
Q ss_pred CCCcccCC--EEEEEcCCC
Q 001149 872 GINLHSAN--RVIIVDGSW 888 (1138)
Q Consensus 872 GLNLt~An--~VIi~D~~W 888 (1138)
|||+.+-. .|||.-.|+
T Consensus 738 GVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 738 GVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred ccccCCCceEEEEEeCCCC
Confidence 99999754 667777666
No 134
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.54 E-value=4.5e-06 Score=94.05 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=91.2
Q ss_pred eEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCC
Q 001149 795 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 874 (1138)
Q Consensus 795 KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLN 874 (1138)
=-||||..+...+.+.-.|.. .|+....++.+....+|..+-+.|.++ .+. +|+.|-.-|.|++
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~------------~Gi~A~AYHAGLK~~ERTeVQe~WM~~---~~P-vI~AT~SFGMGVD 320 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEI------------AGIPAMAYHAGLKKKERTEVQEKWMNN---EIP-VIAATVSFGMGVD 320 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhh------------cCcchHHHhcccccchhHHHHHHHhcC---CCC-EEEEEeccccccC
Confidence 358999999988888888875 799999999999999999999999874 333 5788889999999
Q ss_pred cccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEE
Q 001149 875 LHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYR 913 (1138)
Q Consensus 875 Lt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vyr 913 (1138)
=....-||+.+++-|-+-+-|--||++|-|-..-|..|+
T Consensus 321 Kp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 321 KPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred CcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 999999999999999999999999999999888888775
No 135
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.52 E-value=9e-07 Score=114.64 Aligned_cols=172 Identities=21% Similarity=0.216 Sum_probs=106.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
..|++|+.+..+.....+.++.....+..+.||++.|..|+|||++++-++..+... ....++++||=.. |-.|-.+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~ 321 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSD 321 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHH
Confidence 345555555555444333433333333567899999999999999988777776665 3345777777654 5669999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
+|..+..... ... ...+...-.+.+.. ..++|+|||...|....... ....+....-+||+||
T Consensus 322 ~f~~~~~~~~---~~~--~~~s~~~Lk~~l~~--~~~~ii~TTIQKf~~~~~~~----------~~~~~~~~~ivvI~DE 384 (962)
T COG0610 322 EFQSFGKVAF---NDP--KAESTSELKELLED--GKGKIIVTTIQKFNKAVKED----------ELELLKRKNVVVIIDE 384 (962)
T ss_pred HHHHHHHhhh---hcc--cccCHHHHHHHHhc--CCCcEEEEEecccchhhhcc----------cccccCCCcEEEEEec
Confidence 9998865421 111 22222222223322 25689999999887532211 1112333556799999
Q ss_pred CcccCCcccHHHHHHHh-cccCeEEEEecCCCCCC
Q 001149 541 AHMIKNTRADTTQALKQ-VKCQRRIALTGSPLQNN 574 (1138)
Q Consensus 541 aH~iKN~~S~~skal~~-l~~~~RllLTGTPlqNn 574 (1138)
||+--. ....+.++. ++.-.-++.||||+.-.
T Consensus 385 aHRSQ~--G~~~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 385 AHRSQY--GELAKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred hhhccc--cHHHHHHHHHhccceEEEeeCCccccc
Confidence 997543 233444443 35577899999998644
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.49 E-value=5.9e-05 Score=93.75 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=95.1
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHH-HHHHHHcC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ-KLVERFNE 853 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~-~~i~~Fn~ 853 (1138)
...|..++++-+..+...|..|||.+.++..-+.|..+|.. .|+..-.++.... +++ .+|. +.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~------------~gi~h~vLNAk~~--e~EA~IIa--~A 471 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLE------------ANIPHTVLNAKQN--AREAEIIA--KA 471 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCceeecccch--hhHHHHHH--hC
Confidence 35789999999998888999999999999999999999997 6888888888644 333 3443 22
Q ss_pred CCCCCceEEEeeccccccCCCcccC--------CEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSA--------NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~A--------n~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
+...-+.|+|..+|.|.++.-. =+||..+.+=|-..+.|..||++|.|..-....|
T Consensus 472 ---G~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 472 ---GQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ---CCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 2223368999999999887632 3999999999999999999999999988544443
No 137
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.46 E-value=4.1e-06 Score=105.91 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=43.3
Q ss_pred CEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHH-HHHHcccc
Q 001149 879 NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGL-AARVVDRQ 942 (1138)
Q Consensus 879 n~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l-~~~vvd~~ 942 (1138)
+.||+|||.-.....+| +.|+.|-| +++.||-|+..||.||.-|-...+|.+- +..++...
T Consensus 478 ~~VImYEP~~sfIR~IE-vyra~r~~--r~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIrek 539 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLE-VYKASRPL--RPLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIREK 539 (814)
T ss_pred CEEEEECCChHHHHHHH-HHHccCCC--CCcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999654444444 23444544 4589999999999999998887777654 44555543
No 138
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.45 E-value=3.5e-05 Score=85.47 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
|..-||||-+..--+.+...|+. .||....++..+.+.+|..+-..|-. +.+.| ++.|-|-|.|
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn------------~gi~a~~yha~lep~dks~~hq~w~a---~eiqv-ivatvafgmg 380 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKN------------HGIHAGAYHANLEPEDKSGAHQGWIA---GEIQV-IVATVAFGMG 380 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHh------------cCccccccccccCccccccccccccc---cceEE-EEEEeeeccc
Confidence 67789999888888888888986 58888888888888888777777764 56765 6677899999
Q ss_pred CCcccCCEEEEEcCCCCcchHHHH
Q 001149 873 INLHSANRVIIVDGSWNPTYDLQA 896 (1138)
Q Consensus 873 LNLt~An~VIi~D~~WNP~~~~QA 896 (1138)
|+-+...-||+-..+-+-..+-||
T Consensus 381 idkpdvrfvihhsl~ksienyyqa 404 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQA 404 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHH
Confidence 999999999999999888888894
No 139
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.39 E-value=5.6e-05 Score=94.02 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=99.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHH
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNW 458 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW 458 (1138)
...|-+-|..++..+...+ ....-.+|.-.+|.|||-.-+-+|...+..+ +.+||+|| -++..|-
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~----------~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~ 261 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL----------GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQL 261 (730)
T ss_pred ccccCHHHHHHHHHHHHhc----------ccccceeEeCCCCCcHHHHHHHHHHHHHHcC----CEEEEEeccccchHHH
Confidence 4578889999988775431 1246789999999999998888888887764 68999999 5788898
Q ss_pred HHHHHHHCCCCCCCeEEEEecC-cchhHHHHHHHHHhhc-CCEEEEccchhhcccccccccchhhHHHHhhhhc-cCCCE
Q 001149 459 KQEFMKWRPSELKPLRVFMLED-VSRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ-DGPDI 535 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~-~~~~~r~~~l~~~~~~-~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~-~~~dl 535 (1138)
.+.|+..++. +|.++|+ .+...|...+.+.... ..|+|-+-..+- ++ .+-.+
T Consensus 262 ~~rf~~rFg~-----~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--------------------~Pf~~LGL 316 (730)
T COG1198 262 LARFKARFGA-----KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--------------------LPFKNLGL 316 (730)
T ss_pred HHHHHHHhCC-----ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--------------------CchhhccE
Confidence 8899887764 4455554 4556666555554433 334444333221 11 15579
Q ss_pred EEEcCCccc--CCcccHHHH----HH--HhcccCeEEEEecCCC
Q 001149 536 LVCDEAHMI--KNTRADTTQ----AL--KQVKCQRRIALTGSPL 571 (1138)
Q Consensus 536 VIlDEaH~i--KN~~S~~sk----al--~~l~~~~RllLTGTPl 571 (1138)
||+||=|-- |-.+..++. |+ .....-..++-||||-
T Consensus 317 IIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 317 IIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred EEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 999999963 333322221 11 1224455788899993
No 140
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.25 E-value=0.00021 Score=90.17 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=92.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..++++-+..+...|..|||-+.++..-++|.++|.. .|++.-.++..... +-..+|.+=-.
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~------------~gI~H~VLNAK~h~-~EAeIVA~AG~-- 675 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKM------------RKIPHNVLNAKLHQ-KEAEIVAEAGQ-- 675 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHH------------cCCcHHHhhccchh-hHHHHHHhcCC--
Confidence 4699999999999999999999999999999999999997 67887777765432 22344443222
Q ss_pred CCCceEEEeeccccccCCCcc--------cCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 856 NKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt--------~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
.+ -+-|+|.-+|.|.++. +.=+||.-..+=+...+.|..||++|.|..-..
T Consensus 676 ~G---aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 676 PG---TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred CC---cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcc
Confidence 22 2588999999998866 557999999999999999999999999987443
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.23 E-value=0.00037 Score=87.32 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=65.0
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCC-CHHHHHHHHHHHcCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT-ESSERQKLVERFNEP 854 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGst-s~~eR~~~i~~Fn~~ 854 (1138)
..|..++++-+......|..|||-+.++..-+.|..+|.. .|+++-.++... ..++-..+|.+=-
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~------------~gi~h~vLNAk~~~~~~EA~IIA~AG-- 472 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKE------------YRLPHQLLNAKPENVRRESEIVAQAG-- 472 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHH------------cCCccceeeCCCccchhHHHHHHhcC--
Confidence 4588888888888888999999999999999999999997 689999998874 3334445665522
Q ss_pred CCCCceEEEeeccccccCCCcc
Q 001149 855 LNKRVKCTLISTRAGSLGINLH 876 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt 876 (1138)
...-+-|+|..+|.|.++.
T Consensus 473 ---~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 473 ---RKGSITIATNMAGRGTDII 491 (870)
T ss_pred ---CCCcEEEeccccCCCcCee
Confidence 2223588999999996643
No 142
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.22 E-value=1.6e-05 Score=100.72 Aligned_cols=185 Identities=18% Similarity=0.276 Sum_probs=111.5
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHHH---------HHHHHCCCCCCCeEEEEecCc
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWKQ---------EFMKWRPSELKPLRVFMLEDV 481 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~~---------E~~kw~p~~~~~l~V~~~~~~ 481 (1138)
.+..+.+++|+|||.+++..|..+.... +...+|||||..-+. -..+ -|...++. .++.++++.+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~--~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~--~~~~~~~~~S~ 135 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY--GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYEN--TRIELYVINAG 135 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCC--ceeEEEEEecC
Confidence 5788899999999999999998887664 467999999975433 2222 22222322 23677777654
Q ss_pred c--hhHH---HHHHHHHhh-------cCCEEEEccchhhcccccccccchhh---HHHHhhhhccCCCEEEEcCCcccCC
Q 001149 482 S--RDRR---AELLAKWRA-------KGGVFLIGYTAFRNLSFGKHVKDRNM---AREICHALQDGPDILVCDEAHMIKN 546 (1138)
Q Consensus 482 ~--~~~r---~~~l~~~~~-------~~~VvIity~~~r~l~~~~~~~~~~~---~~~~~~~l~~~~dlVIlDEaH~iKN 546 (1138)
. +..| ...+..+.. .-.|+||+.++|..-.......+..+ .......+...--+||+||+|++..
T Consensus 136 k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~ 215 (986)
T PRK15483 136 DKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR 215 (986)
T ss_pred cccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc
Confidence 3 1111 122233332 23688999999864221111111100 0011123334556899999999965
Q ss_pred cccHHHHHHHhcccCeEEEEecCCCC-------CC--hhHHHHHhhhhccCCCCChHHHHhhccCCccc
Q 001149 547 TRADTTQALKQVKCQRRIALTGSPLQ-------NN--LMEYYCMVDFVREGFLGSSHEFRNRFQNPIEN 606 (1138)
Q Consensus 547 ~~S~~skal~~l~~~~RllLTGTPlq-------Nn--l~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~ 606 (1138)
. .+.++++..++....+.-|||--. |. -.++|+|+-- |+..+.|.+..+.-|.-
T Consensus 216 ~-~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~V 278 (986)
T PRK15483 216 D-NKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVDI 278 (986)
T ss_pred c-hHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEEE
Confidence 2 356788999999999999999743 11 1235655543 34567787777766553
No 143
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.22 E-value=8.7e-05 Score=94.44 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=100.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHH
Q 001149 379 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHN 457 (1138)
Q Consensus 379 l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~q 457 (1138)
....|-|+|++++.-+ ..+.+.+++..+|.|||+.+-.+++..++.+. +++-..|. .|..|
T Consensus 116 ~~F~LD~fQ~~a~~~L--------------er~esVlV~ApTssGKTvVaeyAi~~al~~~q----rviYTsPIKALsNQ 177 (1041)
T COG4581 116 YPFELDPFQQEAIAIL--------------ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ----RVIYTSPIKALSNQ 177 (1041)
T ss_pred CCCCcCHHHHHHHHHH--------------hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC----ceEeccchhhhhhh
Confidence 4567899999999766 46789999999999999999999988877643 58999995 45556
Q ss_pred HHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 458 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 458 W~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
=..+|..-+... .-.+-.+.|.. .......++++|.+.+|++.|... ........||
T Consensus 178 Kyrdl~~~fgdv--~~~vGL~TGDv---------~IN~~A~clvMTTEILRnMlyrg~------------~~~~~i~~Vi 234 (1041)
T COG4581 178 KYRDLLAKFGDV--ADMVGLMTGDV---------SINPDAPCLVMTTEILRNMLYRGS------------ESLRDIEWVV 234 (1041)
T ss_pred HHHHHHHHhhhh--hhhccceecce---------eeCCCCceEEeeHHHHHHHhccCc------------ccccccceEE
Confidence 566665433320 00011111111 112456788899899998765431 1122567899
Q ss_pred EcCCcccCCcc-cHHHHHH-Hhc-ccCeEEEEecCC
Q 001149 538 CDEAHMIKNTR-ADTTQAL-KQV-KCQRRIALTGSP 570 (1138)
Q Consensus 538 lDEaH~iKN~~-S~~skal-~~l-~~~~RllLTGTP 570 (1138)
+||.|.|.... .-.+..+ ..+ +.-+-++||||-
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 99999997543 2333333 333 444889999994
No 144
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.11 E-value=0.00019 Score=88.46 Aligned_cols=145 Identities=14% Similarity=0.227 Sum_probs=95.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~ 459 (1138)
-.|-++|+++|-.| ..|...+.|..+-.|||++|=+.|+....+ ..+++.-.|.-.+. |=.
T Consensus 296 FelD~FQk~Ai~~l--------------erg~SVFVAAHTSAGKTvVAEYAialaq~h----~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHL--------------ERGDSVFVAAHTSAGKTVVAEYAIALAQKH----MTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred CCccHHHHHHHHHH--------------HcCCeEEEEecCCCCcchHHHHHHHHHHhh----ccceEecchhhhhccchH
Confidence 45779999999777 467899999999999999987766655433 34788888976666 455
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++|+.-+.+ .. .+.|.. ........+|||.+.+|++.|... .+. ...+.||+|
T Consensus 358 RDFk~tF~D----vg--LlTGDv---------qinPeAsCLIMTTEILRsMLYrga----dli--------RDvE~VIFD 410 (1248)
T KOG0947|consen 358 RDFKETFGD----VG--LLTGDV---------QINPEASCLIMTTEILRSMLYRGA----DLI--------RDVEFVIFD 410 (1248)
T ss_pred HHHHHhccc----cc--eeecce---------eeCCCcceEeehHHHHHHHHhccc----chh--------hccceEEEe
Confidence 667655543 12 222211 123566799999999998765422 111 145789999
Q ss_pred CCcccCCcc-cHHHHHHHhc--ccCeEEEEecCC
Q 001149 540 EAHMIKNTR-ADTTQALKQV--KCQRRIALTGSP 570 (1138)
Q Consensus 540 EaH~iKN~~-S~~skal~~l--~~~~RllLTGTP 570 (1138)
|.|.|.+.. .-.+.-+.-+ +--.-|+||||-
T Consensus 411 EVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeecccccccccceeeeeeccccceEEEEeccC
Confidence 999996533 2223222222 333469999994
No 145
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.08 E-value=2.3e-05 Score=93.93 Aligned_cols=266 Identities=20% Similarity=0.269 Sum_probs=151.5
Q ss_pred ccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe-C
Q 001149 373 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-P 451 (1138)
Q Consensus 373 ~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~-P 451 (1138)
+-+|..-...|-.-|+++|-+.....-. .-......|.+|.|.-|.||-.++..+|...+.. +.|+.|.+. .
T Consensus 255 lalP~i~sg~lSALQLEav~YAcQ~He~----llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk---GRKrAlW~SVS 327 (1300)
T KOG1513|consen 255 LALPSIDSGHLSALQLEAVTYACQAHEV----LLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK---GRKRALWFSVS 327 (1300)
T ss_pred EecccCcccchhHHHHHHHHHHHhhhhh----cCCCCccceeeeccCcccCCCceeEEEEehhhhc---ccceeEEEEec
Confidence 3467656678899999999987654321 1122345688999999999988777777655443 345666654 4
Q ss_pred cchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhcc
Q 001149 452 VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 531 (1138)
Q Consensus 452 ~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~ 531 (1138)
.-|-..-.+.+...... .+.|+.++..+-.+.... ..-..+.||++.||..+-.-+.++.-+-+...+.+..++..
T Consensus 328 sDLKfDAERDL~DigA~---~I~V~alnK~KYakIss~-en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge 403 (1300)
T KOG1513|consen 328 SDLKFDAERDLRDIGAT---GIAVHALNKFKYAKISSK-ENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGE 403 (1300)
T ss_pred cccccchhhchhhcCCC---Cccceehhhccccccccc-ccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhh
Confidence 44555555555544322 255655544221110000 00112458999999998655554444444455555556656
Q ss_pred CCC-EEEEcCCcccCC-------cccHHHHHHHhc----ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCCh------
Q 001149 532 GPD-ILVCDEAHMIKN-------TRADTTQALKQV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS------ 593 (1138)
Q Consensus 532 ~~d-lVIlDEaH~iKN-------~~S~~skal~~l----~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~------ 593 (1138)
.|+ +||+||+|+.|| ..+++-+++..| ...|.+-.|||-. .|--+|.-+++-+++|..
T Consensus 404 ~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF 479 (1300)
T KOG1513|consen 404 DFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEF 479 (1300)
T ss_pred ccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCccH
Confidence 664 788999999998 335555555444 6677888888864 344455556666666543
Q ss_pred HHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHH
Q 001149 594 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLD 672 (1138)
Q Consensus 594 ~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~ 672 (1138)
.+|.....+ .|. .+...-.-.|+ +++..+-|.. .+-.-...+-.|+|+++-+++|+.-..
T Consensus 480 ~eFi~AvEk---RGv--GAMEIVAMDMK---------~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 480 EEFIHAVEK---RGV--GAMEIVAMDMK---------LRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred HHHHHHHHh---cCC--ceeeeeehhhh---------hhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHHHH
Confidence 444333322 111 11110000111 2222211111 233344567789999999999987544
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=0.00037 Score=88.88 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=54.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.+||.|++-+..+++.+ ..+..++|-..+|+|||+.+|+.......... ...+++..+.++ -+.|-.+
T Consensus 10 ~~y~~Q~~~m~~v~~~l----------~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSL----------DRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCHHHHHHHHHHHHHh----------ccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHH
Confidence 36999999998888765 45688999999999999988887776554322 123566666654 5779999
Q ss_pred HHHH
Q 001149 461 EFMK 464 (1138)
Q Consensus 461 E~~k 464 (1138)
|+++
T Consensus 79 Elk~ 82 (705)
T TIGR00604 79 ELRK 82 (705)
T ss_pred HHHh
Confidence 9988
No 147
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.03 E-value=3.2e-05 Score=77.02 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=69.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAEL 489 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~ 489 (1138)
+|.--+|-.-.|.|||-.++--+..-.-. ...++||+.|..++. +|+.+.+.+. ++++.. . ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva---~em~~aL~~~--~~~~~t--~-~~~~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVA---EEMYEALKGL--PVRFHT--N-ARMR---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHH---HHHHHHTTTS--SEEEES--T-TSS-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHH---HHHHHHHhcC--CcccCc--e-eeec----
Confidence 34556788889999999877644332111 246899999998875 4566666542 233321 1 1100
Q ss_pred HHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCcccHHHHH-HHhc---ccCeEEE
Q 001149 490 LAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQA-LKQV---KCQRRIA 565 (1138)
Q Consensus 490 l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~ska-l~~l---~~~~Rll 565 (1138)
.......|-+++|.+|..... ...-..+|++||+||+|-. .+.|-...- +..+ .....+.
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~-------------~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~ 131 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLL-------------NPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIF 131 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHH-------------TSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEE
T ss_pred --cccCCCcccccccHHHHHHhc-------------CcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEE
Confidence 112455688999998753210 0111238999999999964 343332222 2222 2236899
Q ss_pred EecCCC
Q 001149 566 LTGSPL 571 (1138)
Q Consensus 566 LTGTPl 571 (1138)
|||||-
T Consensus 132 mTATPP 137 (148)
T PF07652_consen 132 MTATPP 137 (148)
T ss_dssp EESS-T
T ss_pred EeCCCC
Confidence 999993
No 148
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.97 E-value=2.2e-06 Score=101.34 Aligned_cols=49 Identities=22% Similarity=0.671 Sum_probs=43.6
Q ss_pred ccccccCCCCce---eecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSDL---VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~l---~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.||.-|+..|.. ||||+||++||+.||++++.+. ..+.|.|+|..|.-.
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~e----niP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPE----NIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcc----cCCCCccccCCCeee
Confidence 499999999988 9999999999999999987777 556889999999654
No 149
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.97 E-value=8.5e-05 Score=78.92 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=42.6
Q ss_pred EeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001149 863 LISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK 907 (1138)
Q Consensus 863 LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k 907 (1138)
|++|.+-|.|+++.+.|.||.||.+-.+..+..+++|++|+|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 778999999999999999999999999999999999999999763
No 150
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.92 E-value=2.2e-05 Score=87.14 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=72.9
Q ss_pred HHHHHHcCCCCCCceEEEeeccccccCCCccc-------CCEE-EEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 846 KLVERFNEPLNKRVKCTLISTRAGSLGINLHS-------ANRV-IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 846 ~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~-------An~V-Ii~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
...+.|++ ++..|+||| .|||.||.|++ --|| |+++++|+....+|-+||+||-||..+..+..+++.
T Consensus 52 ~e~~~F~~---g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMD---GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhC---CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 56679996 455666775 89999999995 2355 578999999999999999999999976433345555
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcccc
Q 001149 918 GTMEEKIYKRQVTKEGLAARVVDRQ 942 (1138)
Q Consensus 918 gTiEekI~~rq~~K~~l~~~vvd~~ 942 (1138)
-..|.+......+|..-..+...++
T Consensus 128 ~~gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 128 LPGERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred CHHHHHHHHHHHHHHhhccccccCc
Confidence 5689999999988888777776554
No 151
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.91 E-value=0.00011 Score=88.17 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=93.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~ 459 (1138)
-+|-|+|..+|.-+ +.+...+...-+-.|||+.|=..|+..++.. .+++.-.|.--+. |=.
T Consensus 128 F~LDpFQ~~aI~Ci--------------dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKY 189 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI--------------DRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKY 189 (1041)
T ss_pred cccCchHhhhhhhh--------------cCCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhH
Confidence 46788999988755 4667888889999999999988888877764 4888889965555 556
Q ss_pred HHHHHHCCC-CCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 460 QEFMKWRPS-ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 460 ~E~~kw~p~-~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
+|+..=+.+ ++..-.|.+ ......+|||.+.+|++.|.. ....+ ...+||+
T Consensus 190 REl~~EF~DVGLMTGDVTI----------------nP~ASCLVMTTEILRsMLYRG----SEvmr--------EVaWVIF 241 (1041)
T KOG0948|consen 190 RELLEEFKDVGLMTGDVTI----------------NPDASCLVMTTEILRSMLYRG----SEVMR--------EVAWVIF 241 (1041)
T ss_pred HHHHHHhcccceeecceee----------------CCCCceeeeHHHHHHHHHhcc----chHhh--------eeeeEEe
Confidence 666543322 111111111 134568999999999865432 11222 3457999
Q ss_pred cCCcccCCcccHH-HH-HHHhc-ccCeEEEEecCC
Q 001149 539 DEAHMIKNTRADT-TQ-ALKQV-KCQRRIALTGSP 570 (1138)
Q Consensus 539 DEaH~iKN~~S~~-sk-al~~l-~~~~RllLTGTP 570 (1138)
||.|.+|...-.. +. .+.-+ ..-+-+.||||-
T Consensus 242 DEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 242 DEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred eeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 9999998644211 11 11222 456678999994
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.90 E-value=0.0018 Score=83.58 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCce
Q 001149 781 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 860 (1138)
Q Consensus 781 ~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~ 860 (1138)
.+.+.|..+...+.+++||-.+..++..+...|... .+ .....|... .|.+++++|+..++.
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~------------~~-~~l~Qg~~~--~~~~l~~~F~~~~~~--- 696 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW------------QV-SHLAQEKNG--TAYNIKKRFDRGEQQ--- 696 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc------------CC-cEEEeCCCc--cHHHHHHHHHcCCCe---
Confidence 445555444455778999888888888888888641 22 234556433 366799999874332
Q ss_pred EEEeeccccccCCCccc--CCEEEEEcCC-CCc
Q 001149 861 CTLISTRAGSLGINLHS--ANRVIIVDGS-WNP 890 (1138)
Q Consensus 861 v~LiSTkaGg~GLNLt~--An~VIi~D~~-WNP 890 (1138)
+|+.+..-.+|+++++ +..|||.-.| .+|
T Consensus 697 -vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 697 -ILLGLGSFWEGVDFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred -EEEecchhhCCCCCCCCCeEEEEEecCCCCCC
Confidence 5788899999999973 5566777655 345
No 153
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.88 E-value=0.0057 Score=76.99 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCC-CCHHHHHHHHHHHcCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGR-TESSERQKLVERFNEP 854 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGs-ts~~eR~~~i~~Fn~~ 854 (1138)
..|..++++-+..+.+.|..|||-+.++..-+.|..+|.. .|+.+-.++.. ...++-..+|.+=-.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~------------~gi~h~vLNAk~~~~~~EA~IIa~AG~- 488 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQE------------QGIPHNLLNAKPENVEREAEIVAQAGR- 488 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHH------------cCCchheeeCCCcchHhHHHHHHhcCC-
Confidence 4689999988888888999999999999999999999997 68888888876 333344455555221
Q ss_pred CCCCceEEEeeccccccCCCcc
Q 001149 855 LNKRVKCTLISTRAGSLGINLH 876 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt 876 (1138)
.+ -+-|+|..+|.|.++.
T Consensus 489 -~G---aVTIATNMAGRGTDIk 506 (939)
T PRK12902 489 -KG---AVTIATNMAGRGTDII 506 (939)
T ss_pred -CC---cEEEeccCCCCCcCEe
Confidence 22 2577888888886643
No 154
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.85 E-value=4.6e-05 Score=85.99 Aligned_cols=99 Identities=24% Similarity=0.249 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.-+|.||||....--|-|++++.... ..-+..+-++|...+.+|..-++.|.. ..++ |||.|.+++.
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkg---------g~~~scvclhgDrkP~Erk~nle~Fkk---~dvk-flictdvaar 570 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKG---------GKHYSCVCLHGDRKPDERKANLESFKK---FDVK-FLICTDVAAR 570 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcC---------CccceeEEEecCCChhHHHHHHHhhhh---cCeE-EEEEehhhhc
Confidence 35799999999999999999998721 134567889999999999999999986 4454 8999999999
Q ss_pred CCCcccCCEEEEEcCCCCcchHHHHHHHHHhh
Q 001149 872 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 903 (1138)
Q Consensus 872 GLNLt~An~VIi~D~~WNP~~~~QAigR~~Ri 903 (1138)
||++++...+|.+..+-....+..||||++|.
T Consensus 571 gldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 571 GLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred cccccCCceEEEEecCcccchhhhhhhccchh
Confidence 99999999999999999999999888887763
No 155
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.004 Score=77.97 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=88.8
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
-.|+.++++-+......|..|||-+.+...-..+...|.+ .|++...++-.-. .|+.-|-.+.-
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~------------~~i~h~VLNAk~h--~~EA~Iia~AG-- 475 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRK------------AGIPHNVLNAKNH--AREAEIIAQAG-- 475 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHh------------cCCCceeeccccH--HHHHHHHhhcC--
Confidence 4699999999999999999999999999999999999986 6888888877665 44444444431
Q ss_pred CCCceEEEeeccccccCCCcc-cCC----------EEEEEcCCCCcchHHHHHHHHHhhCC
Q 001149 856 NKRVKCTLISTRAGSLGINLH-SAN----------RVIIVDGSWNPTYDLQAIYRAWRYGQ 905 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt-~An----------~VIi~D~~WNP~~~~QAigR~~RiGQ 905 (1138)
....+=|+|.-+|.|-++. +.+ +||--+-.=+--.+.|-.||++|.|-
T Consensus 476 --~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 476 --QPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred --CCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 2222477899999999987 444 56666777777788899999999994
No 156
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.82 E-value=0.0013 Score=81.57 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=101.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 487 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~ 487 (1138)
+.+...++...+-.|||...-.++-..++... .+-++-|+|. .++.|=..++..-+......-.+..+... .+.
T Consensus 524 Dr~eSavIVAPTSaGKTfisfY~iEKVLResD--~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~l---tqE 598 (1330)
T KOG0949|consen 524 DRNESAVIVAPTSAGKTFISFYAIEKVLRESD--SDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDL---TQE 598 (1330)
T ss_pred hcccceEEEeeccCCceeccHHHHHHHHhhcC--CCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhh---hHH
Confidence 56678899999999999999999999888866 4588999994 67778777765433211000011111111 111
Q ss_pred HHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCcc-cHHHHHHHhcccCeEEEE
Q 001149 488 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTR-ADTTQALKQVKCQRRIAL 566 (1138)
Q Consensus 488 ~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~-S~~skal~~l~~~~RllL 566 (1138)
..+..| +..|.||..+-+..+...... .........+||+||.|.|.|.. +..+..+-.+-.-.-++|
T Consensus 599 Ysinp~--nCQVLITvPecleslLlspp~---------~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~L 667 (1330)
T KOG0949|consen 599 YSINPW--NCQVLITVPECLESLLLSPPH---------HQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVL 667 (1330)
T ss_pred hcCCch--hceEEEEchHHHHHHhcCchh---------hhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEE
Confidence 111111 457999999888754322100 01112256789999999998865 555556666666778999
Q ss_pred ecCCCCCChhHHHHHhh
Q 001149 567 TGSPLQNNLMEYYCMVD 583 (1138)
Q Consensus 567 TGTPlqNnl~El~~ll~ 583 (1138)
||| ++|+..++-.++
T Consensus 668 SAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 668 SAT--IGNPNLFQKWLN 682 (1330)
T ss_pred ecc--cCCHHHHHHHHH
Confidence 999 688888877776
No 157
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.011 Score=74.30 Aligned_cols=116 Identities=12% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHHHHHHHCCCCC-CCeEEEEecCc-chhHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKWRPSEL-KPLRVFMLEDV-SRDRR 486 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~E~~kw~p~~~-~~l~V~~~~~~-~~~~r 486 (1138)
.|...-+-..+|+|||--.++....+... .++++||+|+. |+.|-.+.+.++..... ....+. ||+. +...+
T Consensus 96 rg~SFaiiAPTGvGKTTfg~~~sl~~a~k----gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ek 170 (1187)
T COG1110 96 RGKSFAIIAPTGVGKTTFGLLMSLYLAKK----GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEK 170 (1187)
T ss_pred cCCceEEEcCCCCchhHHHHHHHHHHHhc----CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHH
Confidence 34566666799999996654444433222 37999999976 56789999999885532 223333 6665 44555
Q ss_pred HHHHHHHhh-cCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCccc
Q 001149 487 AELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI 544 (1138)
Q Consensus 487 ~~~l~~~~~-~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~i 544 (1138)
...+.+... +.+|+|+|...+. ..+..+.+..||+|++|-+..+
T Consensus 171 ee~le~i~~gdfdIlitTs~FL~--------------k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 171 EEALERIESGDFDILITTSQFLS--------------KRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHhcCCccEEEEeHHHHH--------------hhHHHhcccCCCEEEEccHHHH
Confidence 566666544 5678888765543 2233444568999999998765
No 158
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.76 E-value=0.0045 Score=74.81 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=80.7
Q ss_pred CeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCC
Q 001149 794 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 873 (1138)
Q Consensus 794 ~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GL 873 (1138)
.-+|||=....-++...+.|.+....... +. ..-++-++|+.+.++..++ |...+ +..+-+++||..+...|
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~---~~-~~~~lply~aL~~e~Q~rv---F~p~p-~g~RKvIlsTNIAETSl 330 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPE---DC-PELILPLYGALPSEEQSRV---FDPAP-PGKRKVILSTNIAETSL 330 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccc---cC-cceeeeecccCCHHHhhcc---ccCCC-CCcceEEEEcceeeeeE
Confidence 36888888777777766666653111000 00 1146778999998776544 65543 23556799999999999
Q ss_pred CcccCCEEEEEcC------CCCc-----------chHHHHHHHHHhhCCCCcEEEEEEecCCCH
Q 001149 874 NLHSANRVIIVDG------SWNP-----------TYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 920 (1138)
Q Consensus 874 NLt~An~VIi~D~------~WNP-----------~~~~QAigR~~RiGQ~k~V~VyrLv~~gTi 920 (1138)
.+.+.-.|| |+ .||| ..-.||.-|++|-|.+.+-..|||.++.-.
T Consensus 331 TI~GI~YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 331 TIDGIRYVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EecceEEEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 999887775 33 3444 355688888888888999999999987765
No 159
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.67 E-value=0.0022 Score=79.89 Aligned_cols=68 Identities=28% Similarity=0.235 Sum_probs=49.2
Q ss_pred EEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCC-----CcchHHHHHHHHHhhCC
Q 001149 833 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-----NPTYDLQAIYRAWRYGQ 905 (1138)
Q Consensus 833 ~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-----NP~~~~QAigR~~RiGQ 905 (1138)
...+.+.+.++|.-+=..|++ +.++ +|+.|....-|+||++ .|||+=-|.. .-..+.|.+||++|.|=
T Consensus 526 AyHhaGLT~eER~~iE~afr~---g~i~-vl~aTSTlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 526 AYHHAGLTSEEREIIEAAFRE---GNIF-VLVATSTLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred eecccccccchHHHHHHHHHh---cCeE-EEEecchhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 345556677888888889986 4454 4566666899999985 6676655543 44577899999999973
No 160
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.66 E-value=0.0028 Score=80.33 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhhcC--CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 778 KMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~--g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
...++.+++..+... ...+|||-....-+..+...|........ ...+-...++++++..+.+.+ |+.++
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~-----~~~~~ilplHs~~~s~eQ~~V---F~~pp 467 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD-----SLKFAILPLHSSIPSEEQQAV---FKRPP 467 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc-----ccceEEEeccccCChHHHHHh---cCCCC
Confidence 455566666554433 45899999999888888887764211100 023567788999997666554 66655
Q ss_pred CCCceEEEeeccccccCCCcccCCEEE--------EEcCC---------C-CcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVI--------IVDGS---------W-NPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VI--------i~D~~---------W-NP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
.+ ++-+|++|..+...|.+...-.|| .|||. | +-+.-.||.||++|. ++=..|+|++.
T Consensus 468 ~g-~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~ 543 (924)
T KOG0920|consen 468 KG-TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTR 543 (924)
T ss_pred CC-cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeech
Confidence 44 444799999999999998877666 45542 3 445567888888774 45577888765
Q ss_pred C
Q 001149 918 G 918 (1138)
Q Consensus 918 g 918 (1138)
.
T Consensus 544 ~ 544 (924)
T KOG0920|consen 544 S 544 (924)
T ss_pred h
Confidence 4
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.65 E-value=0.0019 Score=80.22 Aligned_cols=108 Identities=17% Similarity=0.287 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceE
Q 001149 782 LLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKC 861 (1138)
Q Consensus 782 L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v 861 (1138)
++..|..-...|++|.|||......++++++... .+..+..++|..+..+ ++.+ .+++|
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~------------~~~~Vl~l~s~~~~~d----v~~W-----~~~~V 329 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCAR------------FTKKVLVLNSTDKLED----VESW-----KKYDV 329 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHh------------cCCeEEEEcCCCCccc----cccc-----cceeE
Confidence 4444544456799999999999999999999986 3677888888766552 2333 34565
Q ss_pred EEeeccccccCCCccc--CCEEEEE--cCCCCcch--HHHHHHHHHhhCCCCcEEEE
Q 001149 862 TLISTRAGSLGINLHS--ANRVIIV--DGSWNPTY--DLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 862 ~LiSTkaGg~GLNLt~--An~VIi~--D~~WNP~~--~~QAigR~~RiGQ~k~V~Vy 912 (1138)
++- |.+.+.|+++-. -+.|+.| .....|.. ..|.+||+..++.. +++||
T Consensus 330 viY-T~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 330 VIY-TPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred EEE-eceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEE
Confidence 554 457788888863 4666665 33444553 58999999888753 45555
No 162
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.0051 Score=78.13 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
..-+|||=.-..-++...+.|.+.. ....+.++-++|..+.++..+ -|+..+.++ +-+++||..+..+
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~--------l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~-RKVVlATNIAETS 326 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAE--------LGDDLEILPLYGALSAEEQVR---VFEPAPGGK-RKVVLATNIAETS 326 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhcc--------ccCCcEEeeccccCCHHHHHh---hcCCCCCCc-ceEEEEccccccc
Confidence 4568888888777777777776510 013578889999999888776 566544432 3369999999999
Q ss_pred CCcccCCEEE--------EEcCC----------CCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 873 INLHSANRVI--------IVDGS----------WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 873 LNLt~An~VI--------i~D~~----------WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
|++.+...|| .||+. =+-+.-.||-||++| +.+=..|||.+++..+
T Consensus 327 LTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 327 LTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred eeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 9999988877 33331 123334466666655 5677889999886555
No 163
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.51 E-value=2.3e-05 Score=64.60 Aligned_cols=47 Identities=32% Similarity=0.905 Sum_probs=37.2
Q ss_pred cccccCC---CCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~---gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
||.+|+. ++++|.||.|.+.||..|+.+..... ....+.|.|+.|.+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~----~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAE----EIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHH----SHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhc----cCCCCcEECcCCcC
Confidence 5888887 88999999999999999976554433 33344999999964
No 164
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.002 Score=78.26 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=45.2
Q ss_pred HHHcCCCCCCceEEEeeccccccCCCcccCCEEE-----------------EEcCCC-CcchHHHHHHHHHhhCCCCcEE
Q 001149 849 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI-----------------IVDGSW-NPTYDLQAIYRAWRYGQTKPVF 910 (1138)
Q Consensus 849 ~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VI-----------------i~D~~W-NP~~~~QAigR~~RiGQ~k~V~ 910 (1138)
+-|...+. ..++.+++|.++...|.+++..+|| -|...| +-+.-.||-|||+|+|- =+
T Consensus 621 RVF~~~p~-g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GH 696 (1172)
T KOG0926|consen 621 RVFDEVPK-GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GH 696 (1172)
T ss_pred hhccCCCC-CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Cc
Confidence 34555443 3567788888888888888877777 233345 66677899999999885 46
Q ss_pred EEEEec
Q 001149 911 AYRLMA 916 (1138)
Q Consensus 911 VyrLv~ 916 (1138)
-|||+.
T Consensus 697 cYRLYS 702 (1172)
T KOG0926|consen 697 CYRLYS 702 (1172)
T ss_pred eeehhh
Confidence 788864
No 165
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.39 E-value=5e-05 Score=80.77 Aligned_cols=73 Identities=25% Similarity=0.651 Sum_probs=51.6
Q ss_pred ceeeccCCCccccc--ccccccc------cccCcccHhhHhhcCcccCCCCCcccccccCCCC---ceeecCCccccccc
Q 001149 149 KFYCTACNNVAIEV--HPHPILN------VIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSS---DLVSCKSCKTLFCT 217 (1138)
Q Consensus 149 ~~~C~~C~~~~~~~--~~Hp~l~------~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg---~l~~Cd~C~~~f~~ 217 (1138)
-+.|.-||+.-++- .|-|.+- -..|-.|| ||.+||..- +|+.||-|.|.||.
T Consensus 246 lvscsdcgrsghpsclqft~nm~~avk~yrwqcieck-----------------~csicgtsenddqllfcddcdrgyhm 308 (336)
T KOG1244|consen 246 LVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK-----------------YCSICGTSENDDQLLFCDDCDRGYHM 308 (336)
T ss_pred hcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc-----------------eeccccCcCCCceeEeecccCCceee
Confidence 38899999873321 1222221 12455554 899999554 69999999999999
Q ss_pred cccccCCCcccccccccCCCceeecCC
Q 001149 218 TCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 218 ~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.||.+.+. ..+++.|.|.+|.
T Consensus 309 yclsppm~------eppegswsc~KOG 329 (336)
T KOG1244|consen 309 YCLSPPMV------EPPEGSWSCHLCL 329 (336)
T ss_pred EecCCCcC------CCCCCchhHHHHH
Confidence 99876543 4578999999994
No 166
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.28 E-value=0.0028 Score=78.56 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHHHHHHH
Q 001149 387 QVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKW 465 (1138)
Q Consensus 387 Q~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~E~~kw 465 (1138)
|.+-+.++++.+. .+...++-..+|.|||+..+.-+....... ..+++||++|+. |..|+.+++...
T Consensus 2 Q~~~~~~i~~al~----------~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 2 QALFYLNCLTSLR----------QKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HHHHHHHHHHHHh----------cCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHH
Confidence 6666777766542 345566778999999988776665443321 136899999965 566888887765
Q ss_pred C
Q 001149 466 R 466 (1138)
Q Consensus 466 ~ 466 (1138)
.
T Consensus 70 ~ 70 (636)
T TIGR03117 70 T 70 (636)
T ss_pred H
Confidence 4
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.26 E-value=0.00072 Score=74.31 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=86.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 462 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~ 462 (1138)
+-..|...+.++.+ ..-.++--+.|+|||+.++++....+..+. .++++|+-|.--. .|.
T Consensus 60 ~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~~----ge~ 119 (262)
T PRK10536 60 RNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQA----DED 119 (262)
T ss_pred CCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCCc----hhh
Confidence 45667777766632 246777899999999999999886553332 4455555554333 455
Q ss_pred HHHCCCCCCC-eEEE---EecCcchhHHHHHHHHH--hhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEE
Q 001149 463 MKWRPSELKP-LRVF---MLEDVSRDRRAELLAKW--RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 536 (1138)
Q Consensus 463 ~kw~p~~~~~-l~V~---~~~~~~~~~r~~~l~~~--~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlV 536 (1138)
..|+|+.... +..| .++.....-....+..+ ...+.|.|.....+|..+ ..-++|
T Consensus 120 LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrt-------------------l~~~~v 180 (262)
T PRK10536 120 LGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRT-------------------FENAVV 180 (262)
T ss_pred hCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCc-------------------ccCCEE
Confidence 5666653110 0000 00000000000111111 123445566555554321 134789
Q ss_pred EEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCC
Q 001149 537 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 574 (1138)
Q Consensus 537 IlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNn 574 (1138)
|+|||+++.- .+....+.++....+++++|-|-|..
T Consensus 181 IvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 181 ILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred EEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 9999999843 45666778888999999999997744
No 168
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.24 E-value=0.0012 Score=77.67 Aligned_cols=101 Identities=23% Similarity=0.245 Sum_probs=77.0
Q ss_pred cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccc
Q 001149 791 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 870 (1138)
Q Consensus 791 ~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg 870 (1138)
..|+=|+-||...- --+..-+.+ ..+.....|.|+.+++.|..-...||++.| .+. +|+.++|.|
T Consensus 356 k~GDCvV~FSkk~I--~~~k~kIE~-----------~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~-e~d-vlVAsDAIG 420 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDI--FTVKKKIEK-----------AGNHKCAVIYGSLPPETRLAQAALFNDPSN-ECD-VLVASDAIG 420 (700)
T ss_pred CCCCeEEEeehhhH--HHHHHHHHH-----------hcCcceEEEecCCCCchhHHHHHHhCCCCC-ccc-eEEeecccc
Confidence 46999999997532 223333333 134559999999999999999999998754 465 477789999
Q ss_pred cCCCcccCCEEEEEcCC---------CCcchHHHHHHHHHhhCCCC
Q 001149 871 LGINLHSANRVIIVDGS---------WNPTYDLQAIYRAWRYGQTK 907 (1138)
Q Consensus 871 ~GLNLt~An~VIi~D~~---------WNP~~~~QAigR~~RiGQ~k 907 (1138)
.|||| +..||||++.. -.-+...|.-|||+|+|.+-
T Consensus 421 MGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 421 MGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred ccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 99999 46899999874 34456679999999998773
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.21 E-value=0.0041 Score=70.63 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc--CCCceEEEeCcc-hHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPVN-VLHNWK 459 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~--~~k~vLIV~P~s-ll~qW~ 459 (1138)
.||.|++-++.+++.+ ..+..+|+-..+|+|||+.++..+......... ...+++++++.. ++.+=.
T Consensus 9 ~r~~Q~~~m~~v~~~~----------~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00488 9 PYPIQYEFMEELKRVL----------DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCHHHHHHHHHHHHHH----------HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHH
Confidence 3999999888887765 345678899999999999988877654443221 113677777754 344555
Q ss_pred HHHHHH
Q 001149 460 QEFMKW 465 (1138)
Q Consensus 460 ~E~~kw 465 (1138)
.++++.
T Consensus 79 ~~l~~~ 84 (289)
T smart00488 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 666654
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.21 E-value=0.0041 Score=70.63 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc--CCCceEEEeCcc-hHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPVN-VLHNWK 459 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~--~~k~vLIV~P~s-ll~qW~ 459 (1138)
.||.|++-++.+++.+ ..+..+|+-..+|+|||+.++..+......... ...+++++++.. ++.+=.
T Consensus 9 ~r~~Q~~~m~~v~~~~----------~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00489 9 PYPIQYEFMEELKRVL----------DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCHHHHHHHHHHHHHH----------HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHH
Confidence 3999999888887765 345678899999999999988877654443221 113677777754 344555
Q ss_pred HHHHHH
Q 001149 460 QEFMKW 465 (1138)
Q Consensus 460 ~E~~kw 465 (1138)
.++++.
T Consensus 79 ~~l~~~ 84 (289)
T smart00489 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 666654
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.18 E-value=0.011 Score=63.93 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=45.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcC-eEEEcCCCccHHHHHHHHHHHHHHh----cccCCCceEEEeCcc-hH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLG-CILAHTMGLGKTFQVIAFLYTAMRS----VNLGLRTALIVTPVN-VL 455 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~G-gILADeMGLGKTlqaIa~i~~l~~~----~~~~~k~vLIV~P~s-ll 455 (1138)
+|-+.|..+|..++. ..+ .++.-..|+|||-++.+++..+... .....+++||++|.+ .+
T Consensus 1 ~ln~~Q~~Ai~~~~~--------------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~av 66 (236)
T PF13086_consen 1 KLNESQREAIQSALS--------------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAV 66 (236)
T ss_dssp ---HHHHHHHHHHCT--------------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHc--------------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhH
Confidence 477899999987632 244 7888999999998888877776321 123457999999976 46
Q ss_pred HHHHHHHHH
Q 001149 456 HNWKQEFMK 464 (1138)
Q Consensus 456 ~qW~~E~~k 464 (1138)
.+-...+.+
T Consensus 67 d~~~~~l~~ 75 (236)
T PF13086_consen 67 DNILERLKK 75 (236)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 677777666
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.17 E-value=0.00037 Score=74.49 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 462 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~ 462 (1138)
+-++|...+.-|++. .-.++--..|+|||+.|++....++..+. .++++|+-|..-+.. +
T Consensus 5 ~~~~Q~~~~~al~~~--------------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~--~~kiii~Rp~v~~~~---~- 64 (205)
T PF02562_consen 5 KNEEQKFALDALLNN--------------DLVIVNGPAGTGKTFLALAAALELVKEGE--YDKIIITRPPVEAGE---D- 64 (205)
T ss_dssp -SHHHHHHHHHHHH---------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS---SEEEEEE-S--TT------
T ss_pred CCHHHHHHHHHHHhC--------------CeEEEECCCCCcHHHHHHHHHHHHHHhCC--CcEEEEEecCCCCcc---c-
Confidence 456899988877631 46777889999999999999988877643 567777777653322 1
Q ss_pred HHHCCCCCCCeEEEEecC-----cchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 463 MKWRPSELKPLRVFMLED-----VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 463 ~kw~p~~~~~l~V~~~~~-----~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
--|+|+.... +...+.. ....-....+......+.+.+.....+|-.++ ...+||
T Consensus 65 lGflpG~~~e-K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~-------------------~~~~iI 124 (205)
T PF02562_consen 65 LGFLPGDLEE-KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTF-------------------DNAFII 124 (205)
T ss_dssp --SS----------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B--------------------SEEEE
T ss_pred cccCCCCHHH-HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccc-------------------cceEEE
Confidence 2344432100 0000000 00000001122223466677777776664321 346799
Q ss_pred EcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCCh
Q 001149 538 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 575 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl 575 (1138)
+|||+++. ...+-..+.++....+++++|-|.|...
T Consensus 125 vDEaQN~t--~~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 125 VDEAQNLT--PEELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp E-SGGG----HHHHHHHHTTB-TT-EEEEEE-------
T ss_pred EecccCCC--HHHHHHHHcccCCCcEEEEecCceeecC
Confidence 99999884 2345556777788899999999987543
No 174
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.07 E-value=0.24 Score=63.93 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=34.4
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK 907 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k 907 (1138)
...+++|+|.+...|+++- .+.+|. |+. .-...+|+.||++|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCC
Confidence 3456899999999999985 344433 332 2346789999999999864
No 175
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.88 E-value=0.00041 Score=86.33 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=42.7
Q ss_pred CCCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 188 DADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 188 d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
++-.++++|++|.++|+++||.+|||++|.+|+..+.. ..+.+.|.|-+|.
T Consensus 339 ~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~------~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 339 GEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRF------AVPSAFWECEVCN 389 (1414)
T ss_pred cceeecccccccCcccceeecccCCceEEeeecCCccc------cCCCccchhhhhh
Confidence 44556789999999999999999999999999765433 3566789999997
No 176
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.82 E-value=0.039 Score=66.55 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=70.8
Q ss_pred CCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcC----CCCc-----------ch
Q 001149 828 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG----SWNP-----------TY 892 (1138)
Q Consensus 828 ~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~----~WNP-----------~~ 892 (1138)
.++.++-|....+..-..+ -|+..+ +.++-.+++|..+...|.+.+...||=--. .+|| ..
T Consensus 596 ~~L~vlpiYSQLp~dlQ~k---iFq~a~-~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 596 TDLAVLPIYSQLPADLQAK---IFQKAE-GGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred CceEEEeehhhCchhhhhh---hcccCC-CCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 3677777888887654433 366433 446678999999999999998888772111 2333 33
Q ss_pred HHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHH---HHHHHHHHHHHc
Q 001149 893 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKR---QVTKEGLAARVV 939 (1138)
Q Consensus 893 ~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~r---q~~K~~l~~~vv 939 (1138)
-.||--|++|-|.+.|=.-|||.++.+....++.- -+....+++.|+
T Consensus 672 ~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred hccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 45566677777778888999999998877766532 123344555554
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.82 E-value=0.0074 Score=65.28 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=93.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E 461 (1138)
.|||-|.+-+..|.+ +..+.+.++-.-||-|||-+++=+++..+..+ .+=+-+|||..++.|-.+-
T Consensus 23 liR~~Q~~ia~~mi~-----------~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg---~~LvrviVpk~Ll~q~~~~ 88 (229)
T PF12340_consen 23 LIRPVQVEIAREMIS-----------PPSGKNSVMQLNMGEGKTSVIVPMLALALADG---SRLVRVIVPKALLEQMRQM 88 (229)
T ss_pred eeeHHHHHHHHHHhC-----------CCCCCCeEeeecccCCccchHHHHHHHHHcCC---CcEEEEEcCHHHHHHHHHH
Confidence 489999999888853 24678999999999999998888777776553 3568899999999998888
Q ss_pred HHHHCCCCCCCeEEEEec--Ccch--hH----HHHHHHHHhhcCCEEEEccchhhcccccc--cccc-----hhhHHHHh
Q 001149 462 FMKWRPSELKPLRVFMLE--DVSR--DR----RAELLAKWRAKGGVFLIGYTAFRNLSFGK--HVKD-----RNMAREIC 526 (1138)
Q Consensus 462 ~~kw~p~~~~~l~V~~~~--~~~~--~~----r~~~l~~~~~~~~VvIity~~~r~l~~~~--~~~~-----~~~~~~~~ 526 (1138)
+..-+.+- ..-.|+.+. -... .. -...+......++|++++.+.+.++.... ...+ ......+.
T Consensus 89 L~~~lg~l-~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q 167 (229)
T PF12340_consen 89 LRSRLGGL-LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQ 167 (229)
T ss_pred HHHHHHHH-hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77665432 223444432 1111 11 12233344568899999999765432110 0000 01111222
Q ss_pred hhhccCCCEEEEcCCcccCCc
Q 001149 527 HALQDGPDILVCDEAHMIKNT 547 (1138)
Q Consensus 527 ~~l~~~~dlVIlDEaH~iKN~ 547 (1138)
.++. ....-|+||++.+-+.
T Consensus 168 ~~l~-~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 168 KWLD-EHSRDILDESDEILSV 187 (229)
T ss_pred HHHH-hcCCeEeECchhccCc
Confidence 3333 3445699999977544
No 178
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.35 E-value=0.025 Score=67.81 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=53.8
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-H
Q 001149 377 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-L 455 (1138)
Q Consensus 377 ~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l 455 (1138)
..+...|-+-|+.++.+...+ + .=.++--..|+|||.+.+-+|..+...+ +++||.+|.++ |
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~------------k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AV 242 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINN------------K-DLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAV 242 (649)
T ss_pred ccCCccccHHHHHHHHHHhcc------------C-CceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHH
Confidence 344566888999999988531 2 4567778999999999999998887763 68999999885 6
Q ss_pred HHHHHHH
Q 001149 456 HNWKQEF 462 (1138)
Q Consensus 456 ~qW~~E~ 462 (1138)
.|-.+.+
T Consensus 243 dNiverl 249 (649)
T KOG1803|consen 243 DNIVERL 249 (649)
T ss_pred HHHHHHh
Confidence 7877654
No 179
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.34 E-value=0.039 Score=61.56 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=86.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH---
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH--- 456 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~--- 456 (1138)
...+++-|+-|+--|. .|-|.=..+|=|||+++...++...- ..+++-||+....+.
T Consensus 75 g~~p~~vQll~~l~L~----------------~G~laEm~TGEGKTli~~l~a~~~AL----~G~~V~vvT~NdyLA~RD 134 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH----------------KGRLAEMKTGEGKTLIAALPAALNAL----QGKGVHVVTSNDYLAKRD 134 (266)
T ss_dssp S----HHHHHHHHHHH----------------TTSEEEESTTSHHHHHHHHHHHHHHT----TSS-EEEEESSHHHHHHH
T ss_pred CCcccHHHHhhhhhcc----------------cceeEEecCCCCcHHHHHHHHHHHHH----hcCCcEEEeccHHHhhcc
Confidence 3445667777774441 57788899999999987554443322 246888999877665
Q ss_pred -HHHHHHHHHCCCCCCCeEEEEecCc-chhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCC
Q 001149 457 -NWKQEFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 534 (1138)
Q Consensus 457 -qW~~E~~kw~p~~~~~l~V~~~~~~-~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~d 534 (1138)
+|...|-++++ +.+...... ....|... + ..+|+-.+-..|..-. .++ .+...-......+++
T Consensus 135 ~~~~~~~y~~LG-----lsv~~~~~~~~~~~r~~~---Y--~~dI~Y~t~~~~~fD~----Lrd-~~~~~~~~~~~r~~~ 199 (266)
T PF07517_consen 135 AEEMRPFYEFLG-----LSVGIITSDMSSEERREA---Y--AADIVYGTNSEFGFDY----LRD-NLALSKNEQVQRGFD 199 (266)
T ss_dssp HHHHHHHHHHTT-------EEEEETTTEHHHHHHH---H--HSSEEEEEHHHHHHHH----HHH-TT-SSGGG--SSSSS
T ss_pred HHHHHHHHHHhh-----hccccCccccCHHHHHHH---H--hCcccccccchhhHHH----HHH-HHhhccchhccCCCC
Confidence 58888888886 555544443 33333332 1 2345544444332110 011 000001112345899
Q ss_pred EEEEcCCcccCC-----c-------------------ccHHHHHHHhcccCeEEEEecCCCCCChhHHH
Q 001149 535 ILVCDEAHMIKN-----T-------------------RADTTQALKQVKCQRRIALTGSPLQNNLMEYY 579 (1138)
Q Consensus 535 lVIlDEaH~iKN-----~-------------------~S~~skal~~l~~~~RllLTGTPlqNnl~El~ 579 (1138)
++|+||+..+-= + .+-.++.+.+. -.+..+|||| ....-.|+|
T Consensus 200 ~~ivDEvDs~LiDea~~pl~is~~Ke~~~i~~~~~t~a~is~q~~f~~-Y~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 200 FAIVDEVDSILIDEARTPLIISGAKEGLKITPESLTLASISYQNFFRL-YPKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp EEEECTHHHHTTTGCCSEEEEEEHHTTS----SEEEEEEEEHHHHHTT-SSEEEEEESS-TGGGHHHHH
T ss_pred EEEEeccceEEEecCcccccccccccCCccCCCCeEEEEeehHHHHHh-cchheeeCCC-ChhhHhhcC
Confidence 999999876421 0 01122222222 3347899999 666666665
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.15 E-value=0.034 Score=54.71 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=62.0
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhccc--CCCceEEEeCcch-HHHHHHHHHHHCCCCCCCeEEEEecCcchhHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPVNV-LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 487 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~--~~k~vLIV~P~sl-l~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~ 487 (1138)
+.-+++.-+.|.|||..+-.++..+...... ...-+.|-+|... ...+..++..-+...... ......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~-- 74 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------RQTSDE-- 74 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------TS-HHH--
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------cCCHHH--
Confidence 3567788999999999988888776543111 1123445555444 445555554433221110 000000
Q ss_pred HHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhcc-CCCEEEEcCCcccCCcccHHHHHHHhc--ccCeEE
Q 001149 488 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GPDILVCDEAHMIKNTRADTTQALKQV--KCQRRI 564 (1138)
Q Consensus 488 ~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~-~~dlVIlDEaH~iKN~~S~~skal~~l--~~~~Rl 564 (1138)
....+...+.. ...+||+||+|++. .......++.+ ...-.+
T Consensus 75 ---------------------------------l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~v 119 (131)
T PF13401_consen 75 ---------------------------------LRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKV 119 (131)
T ss_dssp ---------------------------------HHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEE
T ss_pred ---------------------------------HHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeE
Confidence 01111112222 22479999999984 24555566665 677789
Q ss_pred EEecCC
Q 001149 565 ALTGSP 570 (1138)
Q Consensus 565 lLTGTP 570 (1138)
+|.|||
T Consensus 120 vl~G~~ 125 (131)
T PF13401_consen 120 VLVGTP 125 (131)
T ss_dssp EEEESS
T ss_pred EEEECh
Confidence 999999
No 181
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.07 E-value=0.042 Score=68.17 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=90.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH----HHHHHHHHHC-CCCC--CCeEEEEecCcc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH----NWKQEFMKWR-PSEL--KPLRVFMLEDVS 482 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~----qW~~E~~kw~-p~~~--~~l~V~~~~~~~ 482 (1138)
...++=+-+|+|+|||.+-+-.+..+++.. |.-.++||||..-+. .--.++..++ .... .++..++++..
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~Y--G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~- 149 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKY--GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED- 149 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHh--CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH-
Confidence 345666789999999999999998887764 456899999975442 2222333333 2211 23566665421
Q ss_pred hhHHHHHHHHHhhcCCEEEEccchhhcccccc-cccchh--------hHHHHhhhhccCCCEEEEcCCcccCCcccHHHH
Q 001149 483 RDRRAELLAKWRAKGGVFLIGYTAFRNLSFGK-HVKDRN--------MAREICHALQDGPDILVCDEAHMIKNTRADTTQ 553 (1138)
Q Consensus 483 ~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~-~~~~~~--------~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~sk 553 (1138)
..+.. -.-.....|++++...|..-.... .+.... .....-..+...--+||+||-|++... .+.+.
T Consensus 150 -~~~~~--~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~~ 225 (985)
T COG3587 150 -IEKFK--FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTYG 225 (985)
T ss_pred -HHHHh--hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHHH
Confidence 11111 111133458888888876431111 011000 001111222233457999999999765 68899
Q ss_pred HHHhcccCeEEEEecCC
Q 001149 554 ALKQVKCQRRIALTGSP 570 (1138)
Q Consensus 554 al~~l~~~~RllLTGTP 570 (1138)
++..++....+=.+||-
T Consensus 226 ~i~~l~pl~ilRfgATf 242 (985)
T COG3587 226 AIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHhhCceEEEEecccc
Confidence 99999888877778874
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.99 E-value=0.092 Score=63.38 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=54.9
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW~ 459 (1138)
.+|-.-|..||+..+.+ .=.||--..|+|||++.-++++.+.+.. .+|+||++|.++ +.|-.
T Consensus 409 pkLN~SQ~~AV~~VL~r--------------plsLIQGPPGTGKTvtsa~IVyhl~~~~---~~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQR--------------PLSLIQGPPGTGKTVTSATIVYHLARQH---AGPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhhchHHHHHHHHHHcC--------------CceeeecCCCCCceehhHHHHHHHHHhc---CCceEEEcccchhHHHHH
Confidence 45777899999877542 4568899999999999999998887763 579999999886 67888
Q ss_pred HHHHHH
Q 001149 460 QEFMKW 465 (1138)
Q Consensus 460 ~E~~kw 465 (1138)
.-|++-
T Consensus 472 eKIh~t 477 (935)
T KOG1802|consen 472 EKIHKT 477 (935)
T ss_pred HHHHhc
Confidence 888763
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.96 E-value=0.074 Score=56.92 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=39.1
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 456 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~ 456 (1138)
+|-+-|++++..++. +...-.+|.-.-|.|||...-++...+... ..++++++|.+-..
T Consensus 1 ~L~~~Q~~a~~~~l~------------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~----g~~v~~~apT~~Aa 59 (196)
T PF13604_consen 1 TLNEEQREAVRAILT------------SGDRVSVLQGPAGTGKTTLLKALAEALEAA----GKRVIGLAPTNKAA 59 (196)
T ss_dssp -S-HHHHHHHHHHHH------------CTCSEEEEEESTTSTHHHHHHHHHHHHHHT----T--EEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHh------------cCCeEEEEEECCCCCHHHHHHHHHHHHHhC----CCeEEEECCcHHHH
Confidence 477899999998864 233457788899999998765544444332 25899999986544
No 184
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.95 E-value=0.0059 Score=71.60 Aligned_cols=100 Identities=19% Similarity=0.380 Sum_probs=69.4
Q ss_pred CCCceeeccCCCcccccc---cccccccccCcccHhhHhhc--C------cc-----c-----CCC---CCcccccccCC
Q 001149 146 LSEKFYCTACNNVAIEVH---PHPILNVIVCKDCKCLLEKK--M------HV-----K-----DAD---CSECYCVWCGR 201 (1138)
Q Consensus 146 ~~~~~~C~~C~~~~~~~~---~Hp~l~~~~C~~C~~~~~~~--~------~~-----~-----d~d---~~~~~C~~C~~ 201 (1138)
.+++.+|..|+....+-+ .-|-++.+.|..|..-.... . .. | |-| -....|.+|..
T Consensus 97 ~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~~~~~n~qc~vC~~ 176 (464)
T KOG4323|consen 97 ENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDSGHKVNLQCSVCYC 176 (464)
T ss_pred chhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCccccccceeeeeec
Confidence 467899999998766532 44556777888765433221 1 00 1 101 11235888875
Q ss_pred CC-----ceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 202 SS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 202 gg-----~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
|| .++-|+.|-..||..|..+.+-+..+.+ ....|+|.+|.-.+
T Consensus 177 g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D--~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 177 GGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGD--PFYEWFCDVCNRGP 225 (464)
T ss_pred CCcCccceeeeecccccHHHHHhccCCCCHhhccC--ccceEeehhhccch
Confidence 55 7999999999999999999998887764 67889999997655
No 185
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.71 E-value=0.27 Score=59.57 Aligned_cols=82 Identities=21% Similarity=0.209 Sum_probs=53.3
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcC------CCCc------------
Q 001149 829 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG------SWNP------------ 890 (1138)
Q Consensus 829 Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~------~WNP------------ 890 (1138)
.+-++-|..+.+.+...++ |...+. ..+-+++.|..+...|.+.+.+.|| || .+||
T Consensus 506 eliv~PiYaNLPselQakI---FePtP~-gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKI---FEPTPP-GARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred eEEEeeccccCChHHHHhh---cCCCCC-CceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeee
Confidence 3456667788886655444 544333 3445678889999999888877775 44 3344
Q ss_pred --chHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 891 --TYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 891 --~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
+.-.||-||++|.|-- .-|||.+.-+
T Consensus 580 SKAsA~QRaGRAGRtgPG---KCfRLYt~~a 607 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPG---KCFRLYTAWA 607 (902)
T ss_pred chhhhhhhccccCCCCCC---ceEEeechhh
Confidence 3456888888777654 5577776443
No 186
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.68 E-value=0.12 Score=68.05 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=66.5
Q ss_pred HHHHHHHHHhh-cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 001149 780 VLLLDILTMCS-NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 858 (1138)
Q Consensus 780 ~~L~eiL~~~~-~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~ 858 (1138)
..+.+.|..+. ..+.++|||..+..++..+...|..... ..++. +...|. +...|.+++++|+...+
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~--------~~~~~-ll~Qg~-~~~~r~~l~~~F~~~~~-- 805 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEE--------LEGYV-LLAQGV-SSGSRARLTKQFQQFDK-- 805 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhccc--------ccCce-EEecCC-CCCCHHHHHHHHHhcCC--
Confidence 34445444443 3456888888888889988888874210 01222 222232 22357899999987432
Q ss_pred ceEEEeeccccccCCCcccC--CEEEEEcCCC-Ccch-HHHHH
Q 001149 859 VKCTLISTRAGSLGINLHSA--NRVIIVDGSW-NPTY-DLQAI 897 (1138)
Q Consensus 859 v~v~LiSTkaGg~GLNLt~A--n~VIi~D~~W-NP~~-~~QAi 897 (1138)
-+|+.+....+|+|+.+. ..|||.-.|+ +|.. ..|+.
T Consensus 806 --~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~ 846 (928)
T PRK08074 806 --AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAK 846 (928)
T ss_pred --eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHH
Confidence 257778889999999964 7889988787 5652 44443
No 187
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.58 E-value=0.089 Score=66.24 Aligned_cols=124 Identities=14% Similarity=0.003 Sum_probs=81.0
Q ss_pred CCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHHHHHHHHCCCCCCCeEEEEecC-cchhHHHHHHHHHhhc-
Q 001149 420 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEFMKWRPSELKPLRVFMLED-VSRDRRAELLAKWRAK- 496 (1138)
Q Consensus 420 MGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~~E~~kw~p~~~~~l~V~~~~~-~~~~~r~~~l~~~~~~- 496 (1138)
.|.|||-.-+.++...+..+ +.+||++| .++..|+...|...++. -.|..+|+ .+..+|...+......
T Consensus 169 ~GSGKTevyl~~i~~~l~~G----k~vLvLvPEi~lt~q~~~rl~~~f~~----~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG----RGALVVVPDQRDVDRLEAALRALLGA----GDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC----CeEEEEecchhhHHHHHHHHHHHcCC----CcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 49999999999998887653 57999999 56888999999999873 24555665 4556666555544333
Q ss_pred CCEEEEccchhhcccccccccchhhHHHHhhhhc-cCCCEEEEcCCccc--CCcccHHH----HHHH--hcccCeEEEEe
Q 001149 497 GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ-DGPDILVCDEAHMI--KNTRADTT----QALK--QVKCQRRIALT 567 (1138)
Q Consensus 497 ~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~-~~~dlVIlDEaH~i--KN~~S~~s----kal~--~l~~~~RllLT 567 (1138)
..|+|-|...+- .. .+..+||+||=|.- |...+..+ -++. +...-..++-|
T Consensus 241 ~~IViGtRSAvF--------------------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgS 300 (665)
T PRK14873 241 ARVVVGTRSAVF--------------------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGG 300 (665)
T ss_pred CcEEEEcceeEE--------------------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEEC
Confidence 356666655431 11 16789999999863 43332221 1111 22445567779
Q ss_pred cCCC
Q 001149 568 GSPL 571 (1138)
Q Consensus 568 GTPl 571 (1138)
+||-
T Consensus 301 aTPS 304 (665)
T PRK14873 301 HART 304 (665)
T ss_pred CCCC
Confidence 9993
No 188
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.44 E-value=0.013 Score=70.99 Aligned_cols=47 Identities=30% Similarity=0.747 Sum_probs=36.7
Q ss_pred ccccccCCC--Cc-eeecCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRS--SD-LVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~g--g~-l~~Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.-|.+|+-. -+ ||.||.|..+ ||..||++.+... +.++|+|.-|.-.
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~ei------P~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSES------PVNEWYCTNCSLL 266 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccc------cccceecCcchhh
Confidence 359999844 33 8899999999 9999988766433 4469999999543
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.32 E-value=0.028 Score=58.60 Aligned_cols=84 Identities=27% Similarity=0.305 Sum_probs=54.3
Q ss_pred hcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecc--
Q 001149 790 SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTR-- 867 (1138)
Q Consensus 790 ~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTk-- 867 (1138)
...+.++|||..+-..++.+...+..... ..++..+.- + ..++..++++|.... . .+|+++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~--------~~~~~v~~q-~---~~~~~~~l~~~~~~~--~--~il~~v~~g 69 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLE--------EKGIPVFVQ-G---SKSRDELLEEFKRGE--G--AILLAVAGG 69 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E---------ETSCEEES-T---CCHHHHHHHHHCCSS--S--EEEEEETTS
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcc--------cccceeeec-C---cchHHHHHHHHHhcc--C--eEEEEEecc
Confidence 34578999999999999999988875210 013322222 2 347889999999842 2 2577776
Q ss_pred ccccCCCccc--CCEEEEEcCCCC
Q 001149 868 AGSLGINLHS--ANRVIIVDGSWN 889 (1138)
Q Consensus 868 aGg~GLNLt~--An~VIi~D~~WN 889 (1138)
..++|||+.+ +..||+.-.|+-
T Consensus 70 ~~~EGiD~~~~~~r~vii~glPfp 93 (167)
T PF13307_consen 70 SFSEGIDFPGDLLRAVIIVGLPFP 93 (167)
T ss_dssp CCGSSS--ECESEEEEEEES----
T ss_pred cEEEeecCCCchhheeeecCCCCC
Confidence 8899999995 778999888873
No 190
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.18 E-value=0.0039 Score=67.07 Aligned_cols=42 Identities=24% Similarity=0.587 Sum_probs=34.7
Q ss_pred cccccCCC---CceeecCCccccccccccccCCCcccccccccCCCceee--cCC
Q 001149 195 YCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC--CCS 244 (1138)
Q Consensus 195 ~C~~C~~g---g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~--~C~ 244 (1138)
-|++|++. .+.+.||-|.|.||+.| ||-+ ..+.|.|.|- +|.
T Consensus 316 lC~IC~~P~~E~E~~FCD~CDRG~HT~C----VGL~----~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCDRGPHTLC----VGLQ----DLPRGEWICDMRCRE 362 (381)
T ss_pred hhhccCCcccchheeccccccCCCCccc----cccc----cccCccchhhhHHHH
Confidence 58888865 47999999999999999 6766 4568999998 664
No 191
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.11 E-value=0.29 Score=61.72 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=52.1
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW~ 459 (1138)
..|-+.|+.+|.+.+. .....++--..|+|||.++++++..+...+ .++||++|.+. +.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~-------------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g----~~VLv~a~sn~Avd~l~ 218 (637)
T TIGR00376 156 PNLNESQKEAVSFALS-------------SKDLFLIHGPPGTGKTRTLVELIRQLVKRG----LRVLVTAPSNIAVDNLL 218 (637)
T ss_pred CCCCHHHHHHHHHHhc-------------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEEcCcHHHHHHHH
Confidence 4689999999987642 224577888999999999999988876543 38999999875 55777
Q ss_pred HHHHH
Q 001149 460 QEFMK 464 (1138)
Q Consensus 460 ~E~~k 464 (1138)
+.+..
T Consensus 219 e~l~~ 223 (637)
T TIGR00376 219 ERLAL 223 (637)
T ss_pred HHHHh
Confidence 77765
No 192
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.86 E-value=0.47 Score=56.08 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=41.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 453 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s 453 (1138)
.++|-|.. +|.+. +| +-+.++.|+|-...|.|||+.-++++..+..+.+. .-.-||-|...
T Consensus 16 ~iYPEQ~~---YM~el-----Kr--sLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-~~~KliYCSRT 76 (755)
T KOG1131|consen 16 YIYPEQYE---YMREL-----KR--SLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-EHRKLIYCSRT 76 (755)
T ss_pred ccCHHHHH---HHHHH-----HH--hhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-ccceEEEecCc
Confidence 46787765 44331 11 12567899999999999999999999887766542 23446777543
No 193
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.84 E-value=0.094 Score=61.45 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=31.4
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
.|+--..|+|||+.++.++..+.... ....++++|+...+.+...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~--~~~~~~~l~~n~~l~~~l~ 48 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSE--EGKKVLYLCGNHPLRNKLR 48 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccc--cCCceEEEEecchHHHHHH
Confidence 45566789999999999988872221 2357788888776665444
No 194
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=94.75 E-value=0.012 Score=66.03 Aligned_cols=43 Identities=23% Similarity=0.583 Sum_probs=35.3
Q ss_pred cccccCCCCceeecCC--cc-ccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg~l~~Cd~--C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+|. |...|+.|-||+ || .=||..|+ |-. ..+.|.|+|+-|...
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CV----GL~----~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCV----GLK----TKPKGKWYCPRCKAE 268 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEecc----ccc----cCCCCcccchhhhhh
Confidence 566 779999999999 99 89999995 433 456689999999754
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.69 E-value=0.21 Score=63.86 Aligned_cols=134 Identities=21% Similarity=0.166 Sum_probs=81.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
..|-+-|++++..+. ...-.+|.-..|.|||..+-+++..+...+ +..++++++|.........
T Consensus 322 ~~l~~~Q~~Ai~~~~--------------~~~~~iitGgpGTGKTt~l~~i~~~~~~~~--~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAI--------------QHKVVILTGGPGTGKTTITRAIIELAEELG--GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHH--------------hCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCceEEEEeCchHHHHHHH
Confidence 458899999998763 224688999999999988777766554332 1257888899887776554
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
|.. .. ....+ ...+ .|.... +. . ... -.....++||+||
T Consensus 386 e~~---g~-----~a~Ti--------h~lL-~~~~~~---------~~---------~----~~~--~~~~~~~llIvDE 424 (720)
T TIGR01448 386 EVT---GL-----TASTI--------HRLL-GYGPDT---------FR---------H----NHL--EDPIDCDLLIVDE 424 (720)
T ss_pred Hhc---CC-----ccccH--------HHHh-hccCCc---------cc---------h----hhh--hccccCCEEEEec
Confidence 431 10 00000 0011 110000 00 0 000 0012578999999
Q ss_pred CcccCCcccHHHHHHHhcccCeEEEEecCCCCC
Q 001149 541 AHMIKNTRADTTQALKQVKCQRRIALTGSPLQN 573 (1138)
Q Consensus 541 aH~iKN~~S~~skal~~l~~~~RllLTGTPlqN 573 (1138)
|+.+-.. .....+..+....+++|-|=|-|-
T Consensus 425 aSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 425 SSMMDTW--LALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred cccCCHH--HHHHHHHhCCCCCEEEEECccccc
Confidence 9999433 456666777788899999998773
No 196
>PRK04296 thymidine kinase; Provisional
Probab=94.63 E-value=0.11 Score=55.41 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=25.9
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
.++.-+||.|||..++.++..+... .++++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~----g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER----GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc----CCeEEEEec
Confidence 4677899999999999888776544 347777755
No 197
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.46 E-value=0.066 Score=70.19 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=52.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCcc--HHHHHHHHHHHHHHhcccCCCceEEEeCcchHH
Q 001149 379 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG--KTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 456 (1138)
Q Consensus 379 l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLG--KTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~ 456 (1138)
....+.+||...+.-.... ......+++..|+| ||+.+.++.......+. ..+.++++|..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 146 (866)
T COG0553 81 SRFILIPHQLDIALEVLNE------------LALRVLIADEVGLGDLKTIEAGAILKELLLRGE--IKRVLILVPKTLRA 146 (866)
T ss_pred cccccCcchhhhhhhhhhh------------hhhchhhcccccccccccccccccchHhhhhhh--hccceeccchHHHH
Confidence 3445677777665432221 12337889999999 89998887766655443 46899999999999
Q ss_pred HHHHHHHHHC
Q 001149 457 NWKQEFMKWR 466 (1138)
Q Consensus 457 qW~~E~~kw~ 466 (1138)
+|..|...++
T Consensus 147 ~~~~e~~~~~ 156 (866)
T COG0553 147 QWVVELLEKF 156 (866)
T ss_pred HHHHHhhhhc
Confidence 9999987764
No 198
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.44 E-value=0.067 Score=63.13 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 774 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 774 ~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
+.+.|+.-...++.++...|-+.|-||..+..-+++-...+.+... .+.- ---.+..+.|+..+++|.++-...-.
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~E--T~~~--LV~~i~SYRGGY~A~DRRKIE~~~F~ 581 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAE--TAPH--LVEAITSYRGGYIAEDRRKIESDLFG 581 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHH--hhHH--HHHHHHhhcCccchhhHHHHHHHhhC
Confidence 4477888888888888888999999999987766655444332110 0000 00123446788888888888766543
Q ss_pred CCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 906 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~ 906 (1138)
++. .-+|+|.|..+||++-+-+.|+....|.+-+...|-.||++|-...
T Consensus 582 ---G~L-~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 582 ---GKL-CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ---Cee-eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 333 3589999999999999999999999999999999999999996543
No 199
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.44 E-value=0.27 Score=61.53 Aligned_cols=150 Identities=17% Similarity=0.095 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH-H
Q 001149 384 KAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE-F 462 (1138)
Q Consensus 384 rphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E-~ 462 (1138)
-++|+.++.-.. ...-++|.-..|.|||.++..++..+.........++++++|..-...=..| +
T Consensus 154 ~d~Qk~Av~~a~--------------~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~ 219 (615)
T PRK10875 154 VDWQKVAAAVAL--------------TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESL 219 (615)
T ss_pred CHHHHHHHHHHh--------------cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHH
Confidence 489999997553 2356899999999999999888887765432223468888998765543333 2
Q ss_pred HHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCc
Q 001149 463 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAH 542 (1138)
Q Consensus 463 ~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH 542 (1138)
..-... +.+ .+ ..+ .+ ...-..|...+ +... .....+. ........+|+||||||-
T Consensus 220 ~~~~~~----~~~---~~---~~~-----~~---~~~~a~TiHrl--Lg~~--~~~~~~~--~~~~~~l~~dvlIvDEaS 275 (615)
T PRK10875 220 GKALRQ----LPL---TD---EQK-----KR---IPEEASTLHRL--LGAQ--PGSQRLR--YHAGNPLHLDVLVVDEAS 275 (615)
T ss_pred Hhhhhc----ccc---ch---hhh-----hc---CCCchHHHHHH--hCcC--CCccchh--hccccCCCCCeEEEChHh
Confidence 211110 100 00 000 00 00000111111 0000 0000000 000111267999999999
Q ss_pred ccCCcccHHHHHHHhcccCeEEEEecCCCCC
Q 001149 543 MIKNTRADTTQALKQVKCQRRIALTGSPLQN 573 (1138)
Q Consensus 543 ~iKN~~S~~skal~~l~~~~RllLTGTPlqN 573 (1138)
.+- ....+..+..+...-|++|-|=|-|-
T Consensus 276 Mvd--~~lm~~ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 276 MVD--LPMMARLIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred ccc--HHHHHHHHHhcccCCEEEEecchhhc
Confidence 984 34566777888888999999988763
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=1 Score=53.32 Aligned_cols=75 Identities=8% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCCEEEEcCCcccCCccc---HHHHHHHhcc--cCeEEEEecCCCCCChhHHHHHhhhhccC-----------CCCChHH
Q 001149 532 GPDILVCDEAHMIKNTRA---DTTQALKQVK--CQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLGSSHE 595 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S---~~skal~~l~--~~~RllLTGTPlqNnl~El~~ll~fL~p~-----------~lg~~~e 595 (1138)
++|+||+|++.+...... .+...+..+. ....++|+||-=++.+.+++.-+..+.+. .+|..-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~ 333 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLIS 333 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHH
Confidence 789999999988753322 2222333332 24679999999888888888777665544 2455556
Q ss_pred HHhhccCCccc
Q 001149 596 FRNRFQNPIEN 606 (1138)
Q Consensus 596 F~~~f~~pi~~ 606 (1138)
+...+..|+..
T Consensus 334 ~~~~~~~Pi~y 344 (388)
T PRK12723 334 LIYEMRKEVSY 344 (388)
T ss_pred HHHHHCCCEEE
Confidence 66777777654
No 201
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.67 E-value=0.4 Score=59.76 Aligned_cols=148 Identities=17% Similarity=0.141 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc-CCCceEEEeCcchHHH-HHHHH
Q 001149 385 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPVNVLHN-WKQEF 462 (1138)
Q Consensus 385 phQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~-~~k~vLIV~P~sll~q-W~~E~ 462 (1138)
+.|+.++..... ..-.+|.-..|+|||.++..++..+...... +..++++++|+.-... ..+-+
T Consensus 148 ~~Qk~A~~~al~--------------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~ 213 (586)
T TIGR01447 148 NWQKVAVALALK--------------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESL 213 (586)
T ss_pred HHHHHHHHHHhh--------------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHH
Confidence 799999876643 3678899999999999988888777654321 1236899999876543 33333
Q ss_pred HHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCc
Q 001149 463 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAH 542 (1138)
Q Consensus 463 ~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH 542 (1138)
..-... +... ... .. .-.+-..|...+-..... ...+.. ...-...+|+||||||-
T Consensus 214 ~~~~~~----l~~~------~~~----~~----~~~~~a~TiHrlLg~~~~----~~~~~~--~~~~~l~~dvlIiDEaS 269 (586)
T TIGR01447 214 RKAVKN----LAAA------EAL----IA----ALPSEAVTIHRLLGIKPD----TKRFRH--HERNPLPLDVLVVDEAS 269 (586)
T ss_pred Hhhhcc----cccc------hhh----hh----ccccccchhhhhhcccCC----cchhhh--cccCCCcccEEEEcccc
Confidence 322111 1000 000 00 000001111111100000 000000 00011268999999999
Q ss_pred ccCCcccHHHHHHHhcccCeEEEEecCCCC
Q 001149 543 MIKNTRADTTQALKQVKCQRRIALTGSPLQ 572 (1138)
Q Consensus 543 ~iKN~~S~~skal~~l~~~~RllLTGTPlq 572 (1138)
.+-. ....+.+..+....|++|.|=|-|
T Consensus 270 Mvd~--~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 270 MVDL--PLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred cCCH--HHHHHHHHhcCCCCEEEEECChhh
Confidence 8843 356667777888889999999876
No 202
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.20 E-value=0.21 Score=57.01 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=26.8
Q ss_pred CEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCC
Q 001149 534 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 572 (1138)
Q Consensus 534 dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlq 572 (1138)
.+||+|||+++-- ..+--.+.+.-.-.+|+|||-|-|
T Consensus 353 ~FiIIDEaQNLTp--heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLTP--HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccCH--HHHHHHHHhccCCCEEEEcCCHHH
Confidence 4699999998832 233344556667789999999966
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.71 E-value=0.64 Score=45.07 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=31.0
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
...+|.-.+|.|||..+..++..+.... ..++++.+......+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHH
Confidence 5678899999999998888776653221 25777777665554433
No 204
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.66 E-value=1.1 Score=50.15 Aligned_cols=28 Identities=21% Similarity=0.049 Sum_probs=22.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
...+.+|.-+.|+|||..|-++...+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999998887766543
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.65 E-value=1.3 Score=43.48 Aligned_cols=26 Identities=23% Similarity=0.085 Sum_probs=20.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+...++.-+.|.|||..+-.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45678889999999997766665554
No 206
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=92.63 E-value=0.054 Score=62.71 Aligned_cols=50 Identities=24% Similarity=0.688 Sum_probs=39.3
Q ss_pred cccccCCCCc---eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSSD---LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg~---l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.|.+|...-+ |+.||.|...||.-||++++-+- ++....-.|+|--|+..
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~--Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRL--PKKNKNFGWQCSECDKN 598 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccC--cccccCcceeecccccc
Confidence 4999987664 89999999999999999886554 22344567999999543
No 207
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=92.59 E-value=0.037 Score=69.77 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=45.0
Q ss_pred cccccCCCCceeecCC-ccccccc-cccccCCCcccccccccCCCceeecCCc---chHhHHHHHHH
Q 001149 195 YCVWCGRSSDLVSCKS-CKTLFCT-TCVKRNISEACLSDEVQASCWQCCCCSP---SLLKRLTSELG 256 (1138)
Q Consensus 195 ~C~~C~~gg~l~~Cd~-C~~~f~~-~C~~~~~~~~~~~~~~~~~~W~C~~C~~---~~~~~l~~~~~ 256 (1138)
.|++|+.-|.++||+. ||..||. .|| |..++..-..++.|.|.-|-- .+...|..+++
T Consensus 430 rl~Ie~~det~l~yysT~pqly~ll~cL----d~~~~e~~L~d~i~~~~ee~~rqM~lT~~ltne~R 492 (1414)
T KOG1473|consen 430 RLRIEGMDETLLWYYSTCPQLYHLLRCL----DRTYVEMYLCDGIWERREEIIRQMGLTEELTNELR 492 (1414)
T ss_pred eeEEecCCCcEEEEecCcHHHHHHHHHh----chHHHHHhhccchhhhHHHHHHhccchhhhhhhhh
Confidence 4999999999999999 9999999 995 555566566789999998843 24445555554
No 208
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.44 E-value=0.54 Score=62.12 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=51.1
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-H-HH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-N-WK 459 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-q-W~ 459 (1138)
..||-|.+-+..+.+.+. .+...++=..+|+|||+--+.-+...... ..++++|-+++..+. | +.
T Consensus 257 e~R~~Q~~m~~~v~~~l~----------~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 257 EKREGQQEMMKEVYTALR----------DSEHALIEAGTGTGKSLAYLLPAAYFAKK---KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred cCCHHHHHHHHHHHHHHh----------cCCCEEEECCCCCchhHHHHHHHHHHhhc---cCCeEEEEcCCHHHHHHHHH
Confidence 578999998888777652 33556667899999998665444332221 236888888876665 4 33
Q ss_pred HH---HHHHCCCCCCCeEEEEecC
Q 001149 460 QE---FMKWRPSELKPLRVFMLED 480 (1138)
Q Consensus 460 ~E---~~kw~p~~~~~l~V~~~~~ 480 (1138)
.+ +.+-++. ++++..+.|
T Consensus 324 kDiP~L~~~~~~---~~~~~~lKG 344 (928)
T PRK08074 324 KDIPLLQKIFPF---PVEAALLKG 344 (928)
T ss_pred hhHHHHHHHcCC---CceEEEEEc
Confidence 33 3444543 245554444
No 209
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.36 E-value=0.6 Score=59.49 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCc-eEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK-DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 870 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi-~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg 870 (1138)
.+.++|||..+-..+..+...+... .. -.+...|..+ +..++++|....+. .|++.+....
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~------------~~~~~v~~q~~~~---~~~~l~~f~~~~~~---~~lv~~gsf~ 539 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDE------------RSTLPVLTQGEDE---REELLEKFKASGEG---LILVGGGSFW 539 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhc------------CccceeeecCCCc---HHHHHHHHHHhcCC---eEEEeecccc
Confidence 4558999999988888888888752 11 2445556554 55899999975443 5899999999
Q ss_pred cCCCccc--CCEEEEEcCCCC
Q 001149 871 LGINLHS--ANRVIIVDGSWN 889 (1138)
Q Consensus 871 ~GLNLt~--An~VIi~D~~WN 889 (1138)
+|+|+.+ ...|||.-.|+=
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred CcccCCCCCeeEEEEEecCCC
Confidence 9999996 478888887774
No 210
>PRK08116 hypothetical protein; Validated
Probab=91.67 E-value=6.5 Score=44.27 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=31.7
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 459 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~ 459 (1138)
+.|.+|.-..|+|||.-|.|++..+...+ .+++++.-..++....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~----~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG----VPVIFVNFPQLLNRIK 158 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHH
Confidence 45789999999999999999888876542 3565554344444333
No 211
>PRK06526 transposase; Provisional
Probab=91.63 E-value=0.72 Score=51.47 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=32.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
.+.+.+|.-..|.|||..+.++...+...+ .+++++. ...|.+++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g----~~v~f~t----~~~l~~~l~ 142 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG----HRVLFAT----AAQWVARLA 142 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC----Cchhhhh----HHHHHHHHH
Confidence 457899999999999999999887765442 3444432 234555554
No 212
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=91.19 E-value=2.7 Score=53.68 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=86.1
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~ 459 (1138)
..|-.-|++|+...+.. . .-.++---.|+|||-+..+++..+... .+.+|+.+=++ .|.|-.
T Consensus 668 ~~LN~dQr~A~~k~L~a------------e-dy~LI~GMPGTGKTTtI~~LIkiL~~~----gkkVLLtsyThsAVDNIL 730 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA------------E-DYALILGMPGTGKTTTISLLIKILVAL----GKKVLLTSYTHSAVDNIL 730 (1100)
T ss_pred hhcCHHHHHHHHHHHhc------------c-chheeecCCCCCchhhHHHHHHHHHHc----CCeEEEEehhhHHHHHHH
Confidence 48889999999766532 1 223344456999999988888877655 35888888654 577876
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchh------------HHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhh
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRD------------RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 527 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~------------~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~ 527 (1138)
--+..+.-. -+++-..+...+. +-...+........||.+|--.+... -
T Consensus 731 iKL~~~~i~---~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----------------l 791 (1100)
T KOG1805|consen 731 IKLKGFGIY---ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----------------L 791 (1100)
T ss_pred HHHhccCcc---eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----------------h
Confidence 666544211 1111111111111 11122233334444554443222110 0
Q ss_pred hhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCC
Q 001149 528 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 572 (1138)
Q Consensus 528 ~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlq 572 (1138)
+....||++|+|||-.|--| -++--|....+.+|-|-+.|
T Consensus 792 f~~R~FD~cIiDEASQI~lP-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 792 FVNRQFDYCIIDEASQILLP-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhccccCEEEEccccccccc-----hhhhhhhhcceEEEeccccc
Confidence 11237999999999876433 23445567788888888766
No 213
>CHL00181 cbbX CbbX; Provisional
Probab=90.78 E-value=1.7 Score=49.54 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=28.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
.+...+|.-..|+|||..|-++...+...+.....+++.|...
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 3445789999999999999998877655443333344444433
No 214
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.57 E-value=1.1 Score=51.05 Aligned_cols=41 Identities=20% Similarity=0.078 Sum_probs=27.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
.+.+.+|.-+.|+|||..|-++...+...+....++++.|.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 44578889999999999998887776654432223444443
No 215
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=90.34 E-value=1.2 Score=57.10 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCC
Q 001149 779 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 858 (1138)
Q Consensus 779 l~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~ 858 (1138)
...+.+.|..+...+.++|||..+..++..+...|... .+.. +.+.|.. .|.++++.|.+.-+..
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~-----------~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~ 584 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRD-----------LRLM-LLVQGDQ---PRQRLLEKHKKRVDEG 584 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHh-----------cCCc-EEEeCCc---hHHHHHHHHHHHhccC
Confidence 34555555544445556888888888888888888641 1222 3445642 5778997776420000
Q ss_pred ceEEEeeccccccCCCccc--CCEEEEEcCCC-Cc
Q 001149 859 VKCTLISTRAGSLGINLHS--ANRVIIVDGSW-NP 890 (1138)
Q Consensus 859 v~v~LiSTkaGg~GLNLt~--An~VIi~D~~W-NP 890 (1138)
-.-+|+.+....+|||+.+ ...|||.-.|+ +|
T Consensus 585 ~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p 619 (697)
T PRK11747 585 EGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVP 619 (697)
T ss_pred CCeEEEEeccccccccCCCCceEEEEEEcCCCCCC
Confidence 1125777788899999985 68899988776 44
No 216
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.30 E-value=0.13 Score=62.05 Aligned_cols=45 Identities=27% Similarity=0.634 Sum_probs=36.6
Q ss_pred ccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecC
Q 001149 194 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
.-|++|..||.++||+.|+-+||..|.+..+.+. .....|.|-.|
T Consensus 48 ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~-----~~~~~~~~~~~ 92 (613)
T KOG4299|consen 48 TSCGICKSGGNLLCCDHCPASFHLECDKPPLSPD-----LKGSEINCSRC 92 (613)
T ss_pred hhcchhhhcCCccccccCccccchhccCcccCcc-----cccccccccCC
Confidence 4799999999999999999999999988777643 22355766666
No 217
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.21 E-value=1.4 Score=55.57 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccC--CceEEEEeCCCCHHHHHHHHHHHc----CCCCCCceEEEee
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK--GKDWYRLDGRTESSERQKLVERFN----EPLNKRVKCTLIS 865 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~--Gi~~~rldGsts~~eR~~~i~~Fn----~~~n~~v~v~LiS 865 (1138)
..+.+|||-.+-.+++-+..+...- .+|.. +..-+.+--. +..+=.+++.+|- ++....+-.|-+.
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~-------~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVc 631 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNR-------GLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVC 631 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcc-------hHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEe
Confidence 3455999998888888886665531 22321 1221222111 2223334455553 2322223345666
Q ss_pred ccccccCCCcc--cCCEEEEEcCCCCcchHH
Q 001149 866 TRAGSLGINLH--SANRVIIVDGSWNPTYDL 894 (1138)
Q Consensus 866 TkaGg~GLNLt--~An~VIi~D~~WNP~~~~ 894 (1138)
-...++||++. .+.-||+.-.++=|..|.
T Consensus 632 RGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~ 662 (945)
T KOG1132|consen 632 RGKVSEGLDFSDDNGRAVIITGLPYPPVMDP 662 (945)
T ss_pred cccccCCCCccccCCceeEEecCCCCCCCCH
Confidence 66788999998 466778888887666653
No 218
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.19 E-value=2.5 Score=44.25 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=36.6
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
.+++-+.|.|||.-++.|+...... ..++++|.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEECCCCHHHHHHHHHHc
Confidence 3678899999999999998887654 35789998776666666666544
No 219
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.12 E-value=1.9 Score=46.75 Aligned_cols=28 Identities=21% Similarity=-0.012 Sum_probs=22.3
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
..+...+|.-+.|.|||..+.++.....
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788899999999999888776654
No 220
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.40 E-value=0.83 Score=53.73 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=27.9
Q ss_pred CcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHH
Q 001149 889 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEE 922 (1138)
Q Consensus 889 NP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEe 922 (1138)
.|..-.||.-|++|.|.+++-.-+||.++...+.
T Consensus 358 ~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 358 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 4667788999999999999999999998765544
No 221
>PF13245 AAA_19: Part of AAA domain
Probab=89.26 E-value=1.2 Score=40.12 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=34.4
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
-.++--..|.|||.+++..+..+......+.+++|||+|.....+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 355589999999999999998888542222578999999876544
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.18 E-value=3.9 Score=45.39 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=32.0
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
.|.+|.-..|+|||..+.+++..+...+ .+++++ .+..|...+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g----~~v~~i----t~~~l~~~l~ 143 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG----KSVLII----TVADIMSAMK 143 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEE----EHHHHHHHHH
Confidence 5788999999999999999988876542 356555 2455655554
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.96 E-value=14 Score=44.57 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=36.7
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhc------ccCeEEEEecCCCCCChhHHHHHhhhhccC
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQV------KCQRRIALTGSPLQNNLMEYYCMVDFVREG 588 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l------~~~~RllLTGTPlqNnl~El~~ll~fL~p~ 588 (1138)
++|+||||.+-+...... ....+..+ .....++|++|+=.+.+.+++..+..+.+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~-~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~ 360 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKR-LIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLD 360 (424)
T ss_pred CCCEEEEeCCCCCCCCHH-HHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 689999999866433222 22222222 234579999999888888888877776653
No 224
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=88.92 E-value=0.22 Score=54.24 Aligned_cols=45 Identities=20% Similarity=0.568 Sum_probs=33.4
Q ss_pred cccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcchHh
Q 001149 195 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 249 (1138)
Q Consensus 195 ~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~~~ 249 (1138)
.|++|..-=..-|=-.|...||.-||++.+|.. =+|++|...+..
T Consensus 27 rC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q----------p~CP~Cr~~~~e 71 (391)
T COG5432 27 RCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ----------PFCPVCREDPCE 71 (391)
T ss_pred HhhhhhheeecceecccccchhHHHHHHHhcCC----------CCCccccccHHh
Confidence 677776555554445599999999999999865 259999765543
No 225
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=87.81 E-value=0.24 Score=53.38 Aligned_cols=46 Identities=30% Similarity=0.826 Sum_probs=34.5
Q ss_pred CCCcccccccC--CCCceeecCC--ccc-cccccccccCCCcccccccccCCCceeecCC
Q 001149 190 DCSECYCVWCG--RSSDLVSCKS--CKT-LFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 190 d~~~~~C~~C~--~gg~l~~Cd~--C~~-~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.|.+-|| -|. .=|+.+-||+ |.| =||..| ||-. ..+.|.|+|.-|.
T Consensus 218 e~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~C----VGLk----~pPKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYC-FCQQVSYGQMVACDNANCKREWFHLEC----VGLK----EPPKGKWYCPECK 268 (271)
T ss_pred cCceeEE-EecccccccceecCCCCCchhheeccc----cccC----CCCCCcEeCHHhH
Confidence 4455566 344 4489999999 997 799999 4544 5567999999984
No 226
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=87.35 E-value=0.3 Score=59.14 Aligned_cols=43 Identities=28% Similarity=0.733 Sum_probs=33.2
Q ss_pred cccccCCCC---ceeecCCccccccccccccCCCcccccccccCCCceeecC
Q 001149 195 YCVWCGRSS---DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 195 ~C~~C~~gg---~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
.|-.|+.+| .++.|+.|--+||-.|+++..- ....++|.|.-|
T Consensus 70 vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~------~v~sg~~~ckk~ 115 (694)
T KOG4443|consen 70 VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPND------KVPSGPWLCKKC 115 (694)
T ss_pred eeeeccccCCcccccccccccccccccccCCccc------cccCcccccHHH
Confidence 455566444 6899999999999999876643 567899998777
No 227
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=86.79 E-value=2.5 Score=55.20 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-----HHHHHHHHHCCCCCCCeEEEEecCcch
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-----NWKQEFMKWRPSELKPLRVFMLEDVSR 483 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-----qW~~E~~kw~p~~~~~l~V~~~~~~~~ 483 (1138)
....+.+++...|.|||+.| -++.+. +....++.-+.|...+. -|..-|.+-.+ +.+..+.|...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~a--e~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G-----~~~~~l~ge~s 1226 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACA--ELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG-----LRIVKLTGETS 1226 (1674)
T ss_pred cccceEEEecCCCCchhHHH--HHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhccccC-----ceEEecCCccc
Confidence 45678999999999999654 333332 33456899999987654 47777766522 56666655433
Q ss_pred hHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCcc
Q 001149 484 DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTR 548 (1138)
Q Consensus 484 ~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~ 548 (1138)
... +....++|+|.+++.+..+. .....++.|+||.|.|....
T Consensus 1227 ~~l-----kl~~~~~vii~tpe~~d~lq-----------------~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1227 LDL-----KLLQKGQVIISTPEQWDLLQ-----------------SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred cch-----HHhhhcceEEechhHHHHHh-----------------hhhhcceEeeehhhhhcccC
Confidence 221 12256789999999886541 11256899999999997543
No 228
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=86.79 E-value=11 Score=41.83 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=17.1
Q ss_pred CeEEEcCCCccHHHHHHHHHHH
Q 001149 413 GCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~ 434 (1138)
-.+|.-+.|+|||..+-.++..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 3678999999999877766544
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=86.74 E-value=5.4 Score=50.65 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=22.1
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
....||.-.-|.|||..+..|...+..
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445688999999999999988877754
No 230
>PHA02533 17 large terminase protein; Provisional
Probab=86.51 E-value=5.6 Score=49.21 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=36.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
-.|.|+|+.-+..|+. ++-.++.-.=..|||..+.+++........ ...+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~~--------------~R~~ii~~aRq~GKStl~a~~al~~a~~~~--~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK--------------NRFNACNLSRQLGKTTVVAIFLLHYVCFNK--DKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHhc--------------CeEEEEEEcCcCChHHHHHHHHHHHHHhCC--CCEEEEEeCC
Confidence 4588999998877632 122356666778999988766644433221 3477888883
No 231
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.50 E-value=21 Score=42.30 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=29.2
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC----cchHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP----VNVLHNWKQ 460 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P----~sll~qW~~ 460 (1138)
.-..|.-..|.|||..+..+...+... .+++++|.- ...+.||..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~----GkkVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK----KKTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEEecCCcchHHHHHHHH
Confidence 345677889999999888877665432 245666664 234556653
No 232
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.30 E-value=5.6 Score=48.25 Aligned_cols=49 Identities=10% Similarity=-0.094 Sum_probs=30.2
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E 461 (1138)
..+.+|.-+.|+|||.-+-|+...+..... ...++.|.+...+......
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~--~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFS--DLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEEHHHHHHHHHHH
Confidence 356789999999999888777665543321 2355555554444333333
No 233
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=86.25 E-value=9.1 Score=49.27 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCcCeE-EEcCCCccHHHHHHHHHHHHH
Q 001149 384 KAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI-LAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 384 rphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgI-LADeMGLGKTlqaIa~i~~l~ 436 (1138)
|.-|+..|...+...+. +..+.++| |.-.+|.|||.++-.++..+.
T Consensus 760 REeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555555444433321 12334554 899999999999988876653
No 234
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=86.17 E-value=0.37 Score=46.10 Aligned_cols=48 Identities=23% Similarity=0.694 Sum_probs=33.5
Q ss_pred cccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 197 VWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 197 ~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
++|..-...--|..|...||-.||..-.|.. +.++.++..|.||.|..
T Consensus 22 ~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~-~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 22 TICTGHWKNSSCRGCRGKFCGGCLRNRYGEN-VEEVLEDPNWKCPKCRG 69 (105)
T ss_pred eEcCCCCCCCCCccCcceehHhHHHHHHhhh-HHHHhcCCceECCCCCC
Confidence 3443333333344459999999999988875 44467788999999964
No 235
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=86.15 E-value=6.9 Score=42.57 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=38.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh-cccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS-VNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~-~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
.|.-.+++-+.|.|||+-++-|++..+.. +. +++.|.-.....++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHc
Confidence 34557788999999999999999887766 43 788888666667777777654
No 236
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.14 E-value=9.9 Score=44.51 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=37.5
Q ss_pred ccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 373 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 373 ~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
-++|+.+. =|..|++.+...+..... +..+.+.+|.-..|.|||..+-+++..+..
T Consensus 11 ~~~p~~l~--gRe~e~~~l~~~l~~~~~-------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 11 DYVPDRIV--HRDEQIEELAKALRPILR-------GSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCCCCC--CcHHHHHHHHHHHHHHHc-------CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35566553 367777777655443321 234567888999999999998888876643
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.06 E-value=4.1 Score=47.00 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=39.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
...++|+|....+.+...+. .+.-+...++.-.-|+||+..|.+|+..++...
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~-------~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALD-------AGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred CccccccHHHHHHHHHHHHH-------cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 35689999998877655432 123345677889999999999999998887643
No 238
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=85.99 E-value=3.5 Score=47.80 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=35.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.++|+|....+-+... +..+...++.-..|.|||..|.+|+..++..
T Consensus 3 ~~yPWl~~~~~~~~~~----------~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR----------GRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHC----------CCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 3589988877665431 2344567788999999999999999888754
No 239
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=85.67 E-value=11 Score=38.93 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=23.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVN 440 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~ 440 (1138)
-+..-|+...-|.||+-.|.+|+..++....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 3455688899999999999999998876543
No 240
>PRK08727 hypothetical protein; Validated
Probab=85.61 E-value=7.2 Score=42.90 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=21.3
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
...+|.-..|+|||.-+.|+......
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999888888776544
No 241
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.60 E-value=3.3 Score=43.52 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=24.6
Q ss_pred EEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 415 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 415 ILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
++.-.|+.|||...|..+..+... .++++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~----~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA----GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT----T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC----CCeEEEEEec
Confidence 455789999999888877665433 3578888775
No 242
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.45 E-value=6.1 Score=43.54 Aligned_cols=27 Identities=15% Similarity=-0.039 Sum_probs=20.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
.+...+|.-..|+|||--+.++...+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345788999999999988777666553
No 243
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.41 E-value=1.1 Score=55.86 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=100.4
Q ss_pred CCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-
Q 001149 375 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN- 453 (1138)
Q Consensus 375 vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s- 453 (1138)
.|........|||++-...|-+ ..-....+.-..-+|||..++.++.+.+... ..++|+|.|..
T Consensus 9 ~pG~w~~~~~Py~~eimd~~~~------------~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~---P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 9 EPGPWRTDRTPYLREIMDALSD------------PSVREVVVMKSAQVGKTELLLNWIGYSIDQD---PGPMLYVQPTDD 73 (557)
T ss_pred CCCCCCCCCChhHHHHHHhcCC------------cCccEEEEEEcchhhHhHHHHhhceEEEEeC---CCCEEEEEEcHH
Confidence 4455567789999998776622 2346778888899999998887776654432 46999999975
Q ss_pred hHHHHHH-HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccC
Q 001149 454 VLHNWKQ-EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 532 (1138)
Q Consensus 454 ll~qW~~-E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~ 532 (1138)
....|.. .|...+... ..++-.+.....+........+....+.+.+.+..+-.++ -...
T Consensus 74 ~a~~~~~~rl~Pmi~~s-p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l------------------~s~~ 134 (557)
T PF05876_consen 74 AAKDFSKERLDPMIRAS-PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL------------------RSRP 134 (557)
T ss_pred HHHHHHHHHHHHHHHhC-HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCccc------------------ccCC
Confidence 4556653 343332110 0011011110011111112222223444555555443221 1226
Q ss_pred CCEEEEcCCccc----CCcccHHHHHHHhc---ccCeEEEEecCCCCCChhHHHHH
Q 001149 533 PDILVCDEAHMI----KNTRADTTQALKQV---KCQRRIALTGSPLQNNLMEYYCM 581 (1138)
Q Consensus 533 ~dlVIlDEaH~i----KN~~S~~skal~~l---~~~~RllLTGTPlqNnl~El~~l 581 (1138)
.++|++||...+ .+....+..+..+. ...+++++..||....-.-++.+
T Consensus 135 ~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 135 ARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred cCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 789999999987 44556666666654 45689999999987654444443
No 244
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.14 E-value=6.1 Score=47.92 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=21.5
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
...|+.-+.|.|||..|..++..+..
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 34699999999999999888877643
No 245
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.94 E-value=0.73 Score=55.54 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=29.6
Q ss_pred cCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHHH
Q 001149 418 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQ 460 (1138)
Q Consensus 418 DeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~~ 460 (1138)
..+|.|||+++.++|.+....+ .+.+|..|- ++++..-..
T Consensus 4 matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~ 44 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKL 44 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHh
Confidence 5689999999999998887654 567777664 667664433
No 246
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=84.89 E-value=11 Score=45.16 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=87.5
Q ss_pred CchHHHHHH-HHHHhh--cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 776 SGKMVLLLD-ILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 776 S~Kl~~L~e-iL~~~~--~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
..++..+.+ +|..+. ....++|||..+=--.=.|..+|++ .++.|+.++--++.++-.++-..|.
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~------------~~~sF~~i~EYts~~~isRAR~~F~ 347 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK------------ENISFVQISEYTSNSDISRARSQFF 347 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHh------------cCCeEEEecccCCHHHHHHHHHHHH
Confidence 346666665 454544 3457899998877666678888885 6899999999999999999999999
Q ss_pred CCCCCCceEEEeeccccc-cCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhC
Q 001149 853 EPLNKRVKCTLISTRAGS-LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYG 904 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg-~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiG 904 (1138)
. ++..++|.|-++-= .=..+.++.+||+|.||-+|.-+...+.-+..-.
T Consensus 348 ~---G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 348 H---GRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred c---CCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccc
Confidence 6 56778888876532 2345778999999999999999988886554433
No 247
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.86 E-value=4.9 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.5
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
...+|.-+.|.|||..|.++...+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999887764
No 248
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=84.80 E-value=0.45 Score=58.13 Aligned_cols=59 Identities=25% Similarity=0.590 Sum_probs=41.8
Q ss_pred ccHhhHhhc-------CcccCCCCCcccccccCC-----CCceeecCCccccccccccccCCCcccccccccCCCceeec
Q 001149 175 DCKCLLEKK-------MHVKDADCSECYCVWCGR-----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCC 242 (1138)
Q Consensus 175 ~C~~~~~~~-------~~~~d~d~~~~~C~~C~~-----gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~ 242 (1138)
.|++.++-. .+.+|+| --|-+|.. +.+++.||.|.-|-|+.| .|-- ..++++|.|--
T Consensus 249 ~c~kqi~~~l~~eeglgie~ded---viCDvCrspD~e~~neMVfCd~Cn~cVHqaC----yGIl----e~p~gpWlCr~ 317 (893)
T KOG0954|consen 249 RCKKQINHALETEEGLGIEYDED---VICDVCRSPDSEEANEMVFCDKCNICVHQAC----YGIL----EVPEGPWLCRT 317 (893)
T ss_pred HHHHHHHhhhhhcccceeecccc---ceeceecCCCccccceeEEeccchhHHHHhh----hcee----ecCCCCeeehh
Confidence 466665544 2445544 45666654 578999999999999999 4433 34569999999
Q ss_pred CC
Q 001149 243 CS 244 (1138)
Q Consensus 243 C~ 244 (1138)
|.
T Consensus 318 Ca 319 (893)
T KOG0954|consen 318 CA 319 (893)
T ss_pred cc
Confidence 94
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.53 E-value=5.3 Score=48.51 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=22.1
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
...+|.-..|+|||..+-++...+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 557889999999999988887776543
No 250
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=84.47 E-value=7.8 Score=45.40 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=23.8
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
-+...++.-+.|+|||..|..++..++..
T Consensus 44 l~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 44 LHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred CCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 34467889999999999999998887653
No 251
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=84.23 E-value=10 Score=47.90 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=22.3
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
...|+.-..|.|||..|-.|...+...
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 445889999999999999988877653
No 252
>PRK14974 cell division protein FtsY; Provisional
Probab=84.18 E-value=10 Score=44.15 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=29.3
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc----chHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV----NVLHNWKQEF 462 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~----sll~qW~~E~ 462 (1138)
.-.++.-..|.|||.++..++..+... ..+++++..- ..+.||..-.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~----g~~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKN----GFSVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEecCCcCcHHHHHHHHHHH
Confidence 445667899999998877777655432 2356666543 3445664433
No 253
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=83.97 E-value=2.9 Score=42.37 Aligned_cols=57 Identities=26% Similarity=0.472 Sum_probs=36.0
Q ss_pred EEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccc--cccCCCccc--CCEEEEEcCCC-Ccc
Q 001149 833 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA--GSLGINLHS--ANRVIIVDGSW-NPT 891 (1138)
Q Consensus 833 ~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTka--Gg~GLNLt~--An~VIi~D~~W-NP~ 891 (1138)
+.+.+... .+...+++.|+...+.. ..+|+++.. .++||||.+ +..||+.-.|+ +|.
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~-g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~ 84 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEAR-GALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPD 84 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCC-CEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCC
Confidence 44445432 34578999998643211 124555544 799999995 67888888776 443
No 254
>PRK08181 transposase; Validated
Probab=83.87 E-value=8.7 Score=43.29 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.+.+.+|.-..|.|||.-+.|+...+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 45789999999999999999988776553
No 255
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=83.61 E-value=0.41 Score=64.60 Aligned_cols=54 Identities=24% Similarity=0.639 Sum_probs=41.1
Q ss_pred CCCCCcccccccCCCC---ceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 188 DADCSECYCVWCGRSS---DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 188 d~d~~~~~C~~C~~gg---~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
+.+-..-.|.+|...+ .++.||.|-.+||..|+++-+. -.+.+.|.|+-|.+..
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~------~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALS------SVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhc------cCCcCCccCCccchhh
Confidence 4444445799997555 4799999999999999876543 2345679999999876
No 256
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=83.61 E-value=6 Score=51.11 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=43.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
..|-+-|++++..+.. ...-.+|-...|.|||..+-+++..+... ..++++++|......
T Consensus 351 ~~Ls~~Q~~Av~~i~~-------------s~~~~il~G~aGTGKTtll~~i~~~~~~~----g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG-------------SGDIAVVVGRAGTGKSTMLKAAREAWEAA----GYRVIGAALSGKAAE 410 (744)
T ss_pred CCCCHHHHHHHHHHhc-------------CCCEEEEEecCCCCHHHHHHHHHHHHHhC----CCeEEEEeCcHHHHH
Confidence 3578999999987632 22457899999999998877766554332 357888899876553
No 257
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=83.52 E-value=3.8 Score=41.46 Aligned_cols=55 Identities=25% Similarity=0.394 Sum_probs=37.5
Q ss_pred EEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCccc--CCEEEEEcCCC-Ccc
Q 001149 833 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS--ANRVIIVDGSW-NPT 891 (1138)
Q Consensus 833 ~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~--An~VIi~D~~W-NP~ 891 (1138)
+.+-|. ...+...+++.|.+.... .+|+++...++|||+.+ +..||+.-.|+ ||.
T Consensus 26 i~~e~~-~~~~~~~~l~~f~~~~~~---~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 26 LLVQGE-DGKETGKLLEKYVEACEN---AILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred EEEeCC-ChhHHHHHHHHHHHcCCC---EEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 344443 334578999999864221 35777766999999995 57788888776 444
No 258
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.05 E-value=6.5 Score=46.99 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=21.9
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
...+|.-..|+|||..+-++...+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 456899999999999988887776543
No 259
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.01 E-value=8.7 Score=48.17 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.5
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
+...||.-.-|+|||..+..|...++.
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345688999999999999998888764
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.94 E-value=14 Score=42.81 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=24.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.+.+.+|.-.+|+|||..+.|++..++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34788899999999999999988887654
No 261
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=82.93 E-value=0.99 Score=58.78 Aligned_cols=48 Identities=21% Similarity=0.529 Sum_probs=37.5
Q ss_pred CcccccccCCC-----CceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 192 SECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 192 ~~~~C~~C~~g-----g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
.|..|.+|-+| ...+-||.|.-+.|++| .|.. -.+++.|.|..|.-+|
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~C----ygi~----~ipeg~WlCr~Cl~s~ 270 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQEC----YGIP----FIPEGQWLCRRCLQSP 270 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhc----cCCC----CCCCCcEeehhhccCc
Confidence 34578888665 46899999999999999 4533 4567999999997666
No 262
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=82.78 E-value=0.76 Score=55.52 Aligned_cols=61 Identities=28% Similarity=0.555 Sum_probs=41.9
Q ss_pred CCCCcccccccCCCCceeecC--------CccccccccccccCCCccc----------ccccccCCCceeecCCcchHh
Q 001149 189 ADCSECYCVWCGRSSDLVSCK--------SCKTLFCTTCVKRNISEAC----------LSDEVQASCWQCCCCSPSLLK 249 (1138)
Q Consensus 189 ~d~~~~~C~~C~~gg~l~~Cd--------~C~~~f~~~C~~~~~~~~~----------~~~~~~~~~W~C~~C~~~~~~ 249 (1138)
..-..++|.+|.+||.+++|+ .|+.+++.+|+.+...... +..+...-.|-|++|.+..+.
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~ 163 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLP 163 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCccCcccccCCcceeeeccccceeEEeEEcCcccccccceecCcccc
Confidence 344557999999999999999 3888888888877322222 222223446779999876544
No 263
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.37 E-value=3.7 Score=52.35 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=51.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW~ 459 (1138)
...||.|.+.+..+.+.+ ..+.++++=..+|+|||+-.|+.+........ ++++|.++... ..|-.
T Consensus 14 ~~~r~~Q~~~~~~v~~a~----------~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~ 80 (654)
T COG1199 14 FEPRPEQREMAEAVAEAL----------KGGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLL 80 (654)
T ss_pred CCCCHHHHHHHHHHHHHH----------cCCCcEEEECCCCccHHHHHHHHHHHHHHHcC---CcEEEECCCHHHHHHHH
Confidence 357999999998876543 34566899999999999999888877655532 57777777664 44555
Q ss_pred HHHHH
Q 001149 460 QEFMK 464 (1138)
Q Consensus 460 ~E~~k 464 (1138)
++...
T Consensus 81 ~~~~~ 85 (654)
T COG1199 81 EEDLP 85 (654)
T ss_pred Hhhcc
Confidence 55443
No 264
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.29 E-value=6.7 Score=49.19 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=24.4
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
......||.-.-|+|||..|.+++..++..
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 344578889999999999999998887654
No 265
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=82.19 E-value=0.7 Score=46.57 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=21.8
Q ss_pred cccccccccCCCcccccccccCCCceeecCCcc
Q 001149 214 LFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 214 ~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.||..||++++- ..+++.|+|+.|...
T Consensus 1 g~H~~CL~Ppl~------~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLK------EVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCC------CCCCCCcCCCCCcCC
Confidence 489999988763 457799999999754
No 266
>PRK12377 putative replication protein; Provisional
Probab=82.17 E-value=17 Score=40.51 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=29.9
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
..+.+|.-..|.|||..+.|++..+...+ .+++++.-..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g----~~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG----RSVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CCeEEEEHHHHHHH
Confidence 35788999999999999999988876432 34554433344443
No 267
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=82.13 E-value=4.8 Score=47.45 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
|-+-|...+.++++.+.. ..+...++--.-|.|||...=+++..+.. ..+.+++++|..+...
T Consensus 2 Ln~eQ~~~~~~v~~~~~~--------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~----~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIEN--------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS----RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCHHHHHHHHHHHHHHHc--------cCCcEEEEEcCCCCChhHHHHHHHHHhcc----ccceEEEecchHHHHH
Confidence 567799998888766532 45677788899999999987776665533 2468999999877653
No 268
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=82.05 E-value=18 Score=41.13 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCCEEEEcCCccc-CCcccHHHHHH---Hhc--ccCeEEEEecCC
Q 001149 532 GPDILVCDEAHMI-KNTRADTTQAL---KQV--KCQRRIALTGSP 570 (1138)
Q Consensus 532 ~~dlVIlDEaH~i-KN~~S~~skal---~~l--~~~~RllLTGTP 570 (1138)
+..++|+||.|++ .+...+.-..+ +.| .-+--+++.||+
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 8899999999996 44444444444 334 223347788887
No 269
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=81.93 E-value=0.85 Score=50.88 Aligned_cols=89 Identities=28% Similarity=0.568 Sum_probs=54.5
Q ss_pred cccCCCCceeeccCCCcccccccccccccccCcccHhhHhhc--------------Cccc---CCCCCcccccccC---C
Q 001149 142 HSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKK--------------MHVK---DADCSECYCVWCG---R 201 (1138)
Q Consensus 142 ~~~~~~~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~--------------~~~~---d~d~~~~~C~~C~---~ 201 (1138)
.+......++|+-|+..+=. =| +.|+-|.-..-.. .|.. .+.....+|..|+ .
T Consensus 269 H~~~~~~Gy~CP~CkakvCs---LP----~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~ 341 (378)
T KOG2807|consen 269 HSELSGGGYFCPQCKAKVCS---LP----IECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELL 341 (378)
T ss_pred ccccccCceeCCcccCeeec---CC----ccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccC
Confidence 34455677888888754222 22 3466665443333 2221 2334455799993 4
Q ss_pred CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 202 SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 202 gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
++.-+-|..|...||.+|- ..+. +.--.|+-|..+|
T Consensus 342 ~~~~y~C~~Ck~~FCldCD-v~iH---------esLh~CpgCeh~~ 377 (378)
T KOG2807|consen 342 SSGRYRCESCKNVFCLDCD-VFIH---------ESLHNCPGCEHKP 377 (378)
T ss_pred CCCcEEchhccceeeccch-HHHH---------hhhhcCCCcCCCC
Confidence 5567899999999999992 2222 2234699998654
No 270
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=81.74 E-value=1.6 Score=45.72 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=25.3
Q ss_pred hhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccC
Q 001149 494 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIK 545 (1138)
Q Consensus 494 ~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iK 545 (1138)
....+|+|++|..+-.. .....+. .+...-.+||+||||+|-
T Consensus 117 ~~~adivi~~y~yl~~~---------~~~~~~~-~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDP---------SIRKSLF-GIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp GGG-SEEEEETHHHHSH---------HHHHHHC-T--CCCEEEEETTGGGCG
T ss_pred cccCCEEEeCHHHHhhH---------HHHhhhc-cccccCcEEEEecccchH
Confidence 35678999999986431 1111111 123356789999999984
No 271
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=81.69 E-value=9.2 Score=46.29 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.8
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
...+|.-..|+|||.-+-++...+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 468899999999999888877766543
No 272
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=81.63 E-value=5.9 Score=44.74 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 386 HQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 386 hQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
+|...|+-|.+.+.. ......++.-..|+|||-+|.+|...+..
T Consensus 40 gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 677777766655431 24567888899999999999999988743
No 273
>PLN03025 replication factor C subunit; Provisional
Probab=81.47 E-value=14 Score=42.60 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.9
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
....||.-..|.|||..|.+++..+.
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999998887764
No 274
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.42 E-value=12 Score=47.22 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=22.1
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
....|+.-..|.|||..|.+++..+..
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456699999999999998888877643
No 275
>PRK06921 hypothetical protein; Provisional
Probab=81.28 E-value=22 Score=40.03 Aligned_cols=29 Identities=28% Similarity=0.205 Sum_probs=24.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.+.+.+|.-..|+|||..+.|++..+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 45788999999999999999988877543
No 276
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.36 E-value=7.5 Score=41.64 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=23.8
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
.+|.-.+|.|||-++.-+.+.+... .+++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK----GKKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc----cccceeecC
Confidence 4677899999999988877776544 345666664
No 277
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.30 E-value=13 Score=46.61 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=21.7
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
...|+.-.-|+|||..|.+|+..+..
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34588999999999999998877754
No 278
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=79.98 E-value=22 Score=35.61 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=23.6
Q ss_pred EEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 415 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 415 ILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
++.-..|.|||..+..++...... ..+++++..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~ 35 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK----GGKVVYVDI 35 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc----CCEEEEEEC
Confidence 566778999999998888776442 346666654
No 279
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=79.98 E-value=12 Score=48.73 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=22.6
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
....||.-.-|.|||..|..|...++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 345689999999999999998888764
No 280
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=79.96 E-value=23 Score=39.51 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 453 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s 453 (1138)
.+.-.+|+-..|.|||..++.++..+.... ..+++++.--.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~---g~~vl~iS~E~ 69 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH---GVRVGTISLEE 69 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc---CceEEEEEccc
Confidence 455678999999999999998887765431 24677777533
No 281
>PRK11054 helD DNA helicase IV; Provisional
Probab=79.81 E-value=5 Score=51.18 Aligned_cols=70 Identities=13% Similarity=-0.036 Sum_probs=51.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E 461 (1138)
.|-|-|.++|..- . ...++-...|+|||.++++-+.+++.........+|+++...-..+...|
T Consensus 196 ~L~~~Q~~av~~~---------------~-~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 196 PLNPSQARAVVNG---------------E-DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred CCCHHHHHHHhCC---------------C-CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHH
Confidence 4888899888521 2 34566667999999999999998887654445689999998887776655
Q ss_pred -HHHHCC
Q 001149 462 -FMKWRP 467 (1138)
Q Consensus 462 -~~kw~p 467 (1138)
+...++
T Consensus 260 RL~~~lg 266 (684)
T PRK11054 260 RIRERLG 266 (684)
T ss_pred HHHHhcC
Confidence 555443
No 282
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=79.73 E-value=17 Score=44.63 Aligned_cols=75 Identities=21% Similarity=0.172 Sum_probs=49.8
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
...+....+.+.|.+..... +.+. ......|.+|+-..|.|||+.|-|+.... ..+++-|-...++..|.-
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~-~~~~-~~~~~~giLl~GpPGtGKT~lAkava~~~-------~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 248 EEAKEELKEAIETPLKRPEL-FRKL-GLRPPKGVLLYGPPGTGKTLLAKAVALES-------RSRFISVKGSELLSKWVG 318 (494)
T ss_pred HHHHHHHHHHHHhHhhChHH-HHhc-CCCCCCeeEEECCCCCCHHHHHHHHHhhC-------CCeEEEeeCHHHhccccc
Confidence 45677778888877653221 1110 12355699999999999999988877532 235555555588888877
Q ss_pred HHHH
Q 001149 461 EFMK 464 (1138)
Q Consensus 461 E~~k 464 (1138)
|.++
T Consensus 319 esek 322 (494)
T COG0464 319 ESEK 322 (494)
T ss_pred hHHH
Confidence 7765
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.64 E-value=19 Score=42.64 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=33.9
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 464 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~k 464 (1138)
+.-.+|+-++|.|||..++.++..+... .+++|+|.-.....|......+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~----g~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR----GGKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEECCcCHHHHHHHHHH
Confidence 4456788999999999988888766443 2478888755444554444433
No 284
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=79.63 E-value=6.2 Score=45.90 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=37.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.++|+|...-+.+...+. .+.-+..-+++-.-|+||+..|.+|+..++..
T Consensus 2 ~~yPWl~~~~~~l~~~~~-------~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQ-------AGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHH-------cCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 368888887666654432 22345567789999999999999999988764
No 285
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=79.62 E-value=11 Score=40.23 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=26.0
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEE
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 449 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV 449 (1138)
....++.-..|-|||-.|+++.......+ .+++||
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G----~~V~iv 56 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG----KKVGVV 56 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC----CeEEEE
Confidence 35667779999999999999887766553 356654
No 286
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=79.40 E-value=14 Score=42.38 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=24.2
Q ss_pred CCCEEEEcCCcccCCccc--HHHHHHHhcccCeEEEEecCCC
Q 001149 532 GPDILVCDEAHMIKNTRA--DTTQALKQVKCQRRIALTGSPL 571 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S--~~skal~~l~~~~RllLTGTPl 571 (1138)
..++||+||+|.+..... .....+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 567899999998833221 1222233335566788888643
No 287
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=79.18 E-value=4.4 Score=45.91 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=38.0
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWKQEFMK 464 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~~E~~k 464 (1138)
+..++-..-|+|||.+++.-+..++.........+|+|+++.... .-...+..
T Consensus 14 ~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 14 GPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 456666779999999999998888877655567899999977543 33344443
No 288
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.16 E-value=13 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.0
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
...+|.-+.|+|||..|-+++..+.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4458999999999999988887764
No 289
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.05 E-value=11 Score=45.72 Aligned_cols=36 Identities=25% Similarity=0.073 Sum_probs=25.7
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
.+.+|.-+.|+|||.-+-|+...+... ..+++.|..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~----~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES----GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEeeH
Confidence 567889999999999888887776543 234555443
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=78.94 E-value=7.6 Score=43.38 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=40.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
..+.|.+|--..|.|||..|+|+...+... ..+++++.=+.++.+++..+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~----g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKA----GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHHHHHHHh
Confidence 367899999999999999999999888733 247777776777777766654
No 291
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=78.38 E-value=19 Score=44.34 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=23.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.....||.-+.|.|||..|-+++..+...
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34678999999999999999988777543
No 292
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=78.36 E-value=19 Score=41.80 Aligned_cols=50 Identities=14% Similarity=0.039 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
++|+|...-+-+.+.+. .+.-+..-++.-..|+||+..|.+|+..++...
T Consensus 3 ~yPW~~~~~~~l~~~~~-------~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQ-------QGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHH-------cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888877666554432 123345677889999999999999998887643
No 293
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.13 E-value=16 Score=47.37 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.3
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.-.||.-+.|.|||..|-+|+..+..
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccC
Confidence 33489999999999999988877654
No 294
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.52 E-value=0.89 Score=54.07 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcchHhHHH
Q 001149 190 DCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLT 252 (1138)
Q Consensus 190 d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~ 252 (1138)
.+.+.||.-|.-.|.++.|+.|-|+||..|+.+-.-.. ..+.+|.|+.|.+.+-.-+.
T Consensus 57 ~N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r-----~~s~p~~~p~p~s~k~~~~~ 114 (588)
T KOG3612|consen 57 SNIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKR-----NYSVPSDKPQPYSFKVNELD 114 (588)
T ss_pred cCCCcccccccCCcceeeeehhhccccccccCcchhhc-----cccccccCCcccccCCCccc
Confidence 45677999999999999999999999999976443222 24589999999776544443
No 295
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=77.10 E-value=17 Score=48.09 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=74.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E 461 (1138)
.|-+-|+++|..+.. ...-.+|--.-|.|||.+.-+++ ..+... ...++.++|......=..+
T Consensus 346 ~Ls~eQr~Av~~il~-------------s~~v~vv~G~AGTGKTT~l~~~~-~~~e~~---G~~V~~~ApTGkAA~~L~e 408 (988)
T PRK13889 346 VLSGEQADALAHVTD-------------GRDLGVVVGYAGTGKSAMLGVAR-EAWEAA---GYEVRGAALSGIAAENLEG 408 (988)
T ss_pred CCCHHHHHHHHHHhc-------------CCCeEEEEeCCCCCHHHHHHHHH-HHHHHc---CCeEEEecCcHHHHHHHhh
Confidence 488899999886632 22347888999999998654433 333321 2468888898765532211
Q ss_pred HHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCC
Q 001149 462 FMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEA 541 (1138)
Q Consensus 462 ~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEa 541 (1138)
- .. +. ...+..|... +.. + .......++|||||+
T Consensus 409 ~---tG-----i~------------a~TI~sll~~----------~~~---~-------------~~~l~~~~vlIVDEA 442 (988)
T PRK13889 409 G---SG-----IA------------SRTIASLEHG----------WGQ---G-------------RDLLTSRDVLVIDEA 442 (988)
T ss_pred c---cC-----cc------------hhhHHHHHhh----------hcc---c-------------ccccccCcEEEEECc
Confidence 0 00 00 0111111000 000 0 000125679999999
Q ss_pred cccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhH
Q 001149 542 HMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLME 577 (1138)
Q Consensus 542 H~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~E 577 (1138)
-.+... ...+.+... ...-+++|.|=|-|-...+
T Consensus 443 SMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV~ 477 (988)
T PRK13889 443 GMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAIE 477 (988)
T ss_pred ccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCCC
Confidence 988433 344455443 6678999999998765443
No 296
>PRK06893 DNA replication initiation factor; Validated
Probab=76.87 E-value=17 Score=39.90 Aligned_cols=26 Identities=12% Similarity=-0.072 Sum_probs=20.7
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
..+|.-..|+|||.-+.|+...+...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45899999999998888877665443
No 297
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=76.35 E-value=1.6 Score=37.61 Aligned_cols=37 Identities=27% Similarity=0.835 Sum_probs=16.9
Q ss_pred ccccCCCCceeec-CCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 196 CVWCGRSSDLVSC-KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 196 C~~C~~gg~l~~C-d~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
|..|.+--.--.| .+|...||..||...+|.+ |++|.
T Consensus 10 Cs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~------------CPvC~ 47 (65)
T PF14835_consen 10 CSICFDILKEPVCLGGCEHIFCSSCIRDCIGSE------------CPVCH 47 (65)
T ss_dssp -SSS-S--SS-B---SSS--B-TTTGGGGTTTB-------------SSS-
T ss_pred CcHHHHHhcCCceeccCccHHHHHHhHHhcCCC------------CCCcC
Confidence 4444443333333 5699999999987766522 99996
No 298
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=75.99 E-value=1.3 Score=51.86 Aligned_cols=83 Identities=17% Similarity=0.446 Sum_probs=53.5
Q ss_pred ccccccCCCCceeeccCCCccccc-cccccc--ccccCcccHh---hH--------hhcCcccCCCCCcc----------
Q 001149 139 NSLHSQSLSEKFYCTACNNVAIEV-HPHPIL--NVIVCKDCKC---LL--------EKKMHVKDADCSEC---------- 194 (1138)
Q Consensus 139 ~~~~~~~~~~~~~C~~C~~~~~~~-~~Hp~l--~~~~C~~C~~---~~--------~~~~~~~d~d~~~~---------- 194 (1138)
++...++++-.++|..|.-.+++- .--|++ +..+|+.|-- .+ ..|.|...+||...
T Consensus 200 ~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H~iCA~~~pe 279 (669)
T COG5141 200 TSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGHVICAMFNPE 279 (669)
T ss_pred cccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHhHhHHHhcch
Confidence 355678888999999997664432 223444 2346776621 11 23344444555442
Q ss_pred -------------------------cccccC-CCCceeecCC--ccccccccccc
Q 001149 195 -------------------------YCVWCG-RSSDLVSCKS--CKTLFCTTCVK 221 (1138)
Q Consensus 195 -------------------------~C~~C~-~gg~l~~Cd~--C~~~f~~~C~~ 221 (1138)
-|-+|. .||.-|-|.. |.++||+.|-.
T Consensus 280 lsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCAr 334 (669)
T COG5141 280 LSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCAR 334 (669)
T ss_pred hccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhh
Confidence 299997 6888888865 99999999954
No 299
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=75.94 E-value=16 Score=45.65 Aligned_cols=45 Identities=20% Similarity=0.082 Sum_probs=28.2
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
...+|.-..|+|||.-+.|+...+..... ...++.|.-..++..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~--g~~V~Yitaeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYP--GTRVRYVSSEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCC--CCeEEEeeHHHHHHHH
Confidence 44788999999999988887776643211 2344444443334333
No 300
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=75.68 E-value=22 Score=36.77 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=32.5
Q ss_pred ccCCCEEEEcCCcccCC----cccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHh
Q 001149 530 QDGPDILVCDEAHMIKN----TRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 582 (1138)
Q Consensus 530 ~~~~dlVIlDEaH~iKN----~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll 582 (1138)
...+|+||+||.=..-+ +...+...+..-...--++|||-=....+.|+..++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 34899999999865522 223444444444555579999976555444444433
No 301
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.52 E-value=28 Score=42.68 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=23.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.-+...||.-..|.|||-.|..+...+..
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 34457889999999999988888766644
No 302
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.50 E-value=15 Score=46.15 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.6
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
....|+.-.-|.|||..|..|+..++.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456778999999999999998877754
No 303
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.46 E-value=21 Score=43.52 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=21.3
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
+...||.-+.|.|||..|-+++..+.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34568999999999999888877664
No 304
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=75.29 E-value=4.2 Score=50.68 Aligned_cols=79 Identities=29% Similarity=0.459 Sum_probs=53.1
Q ss_pred HHHHcCCCCCCceEEEeeccccccCCCcccCC-------EE-EEEcCCCCcchHHHHHHHHHhhCCCC-cEEEEEEecCC
Q 001149 848 VERFNEPLNKRVKCTLISTRAGSLGINLHSAN-------RV-IIVDGSWNPTYDLQAIYRAWRYGQTK-PVFAYRLMAHG 918 (1138)
Q Consensus 848 i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An-------~V-Ii~D~~WNP~~~~QAigR~~RiGQ~k-~V~VyrLv~~g 918 (1138)
..+|-+ +.-.|-||| .|.+.||.||.-. || |-++.||+...-+|-.||.||-.|.. |=||| ||++=
T Consensus 850 KqrFM~---GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvF-lIseL 924 (1300)
T KOG1513|consen 850 KQRFMD---GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVF-LISEL 924 (1300)
T ss_pred Hhhhcc---ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEE-Eehhh
Confidence 356775 333355666 6889999999643 44 44899999999999999999999984 44554 44433
Q ss_pred CHHHHHHHHHHHHH
Q 001149 919 TMEEKIYKRQVTKE 932 (1138)
Q Consensus 919 TiEekI~~rq~~K~ 932 (1138)
-=| +-+.-.+.|+
T Consensus 925 AGE-rRFAS~VAKR 937 (1300)
T KOG1513|consen 925 AGE-RRFASIVAKR 937 (1300)
T ss_pred ccc-hHHHHHHHHH
Confidence 333 3344444443
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.04 E-value=19 Score=42.47 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=26.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
.+.-.+|.-..|.|||.++..++..+.... +.+++.+|..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~--G~~~V~lit~ 175 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF--GASKVALLTT 175 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEec
Confidence 455677789999999999888887654321 1235555554
No 306
>PRK09183 transposase/IS protein; Provisional
Probab=74.98 E-value=18 Score=40.42 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
..+.+.+|.-+.|.|||..+.++.....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3567888999999999999998866544
No 307
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=74.78 E-value=34 Score=40.37 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=25.9
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
.-+..-++.-.-|.|||..|.+|+..++...
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 3455688899999999999999999988654
No 308
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.19 E-value=27 Score=43.08 Aligned_cols=27 Identities=19% Similarity=0.083 Sum_probs=21.9
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
+...|+.-..|.|||..|-+++..+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344688999999999999888877754
No 309
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.85 E-value=22 Score=43.94 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=70.0
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...|||-.+.+.++......|.++||.+........+.+.|+.. .|..+..++|.++..+|.+...+..
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~-----------f~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYR-----------FGSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH-----------hCCcEEEEECCCCHHHHHHHHHHHH
Confidence 45699999999988888888999999999998887777777752 3667889999999988887776665
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEc
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVD 885 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D 885 (1138)
+ +...| ++.|+..- =+-+.....||+=+
T Consensus 74 ~---g~~~I-VVGTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 74 N---GEILV-VIGTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred c---CCCCE-EECChHHH-cCcccCCCEEEEEC
Confidence 4 33444 55555422 13344555555544
No 310
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=73.71 E-value=10 Score=47.43 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=27.3
Q ss_pred CcEEEEEEecCC-CHHHHHHHHHHHHHHHHHHHcccccc
Q 001149 907 KPVFAYRLMAHG-TMEEKIYKRQVTKEGLAARVVDRQQV 944 (1138)
Q Consensus 907 k~V~VyrLv~~g-TiEekI~~rq~~K~~l~~~vvd~~~~ 944 (1138)
.+|..|+-..++ .++-=+|-++..|....+..|..-+.
T Consensus 617 ~~~~F~H~~~~~~~v~~P~yll~~~K~~Afe~Fi~~fNs 655 (738)
T PHA03368 617 PSLLFYHCRPPGSAVAYPFFLLQKQKTPAFDHFIKRFNS 655 (738)
T ss_pred ceeEEEeeCCCCCceeCcchhhccchhHHHHHHHHHhcC
Confidence 356777777776 68888888888888887777765433
No 311
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=73.54 E-value=7.8 Score=47.76 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=29.9
Q ss_pred CccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-----HHHHHHHHHHHCCCC
Q 001149 421 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-----LHNWKQEFMKWRPSE 469 (1138)
Q Consensus 421 GLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-----l~qW~~E~~kw~p~~ 469 (1138)
-=|||..++++|..++..-. .-.+..|+=..- ...-...+.+|+|..
T Consensus 212 RHGKTWf~VpiIsllL~s~~--gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~ 263 (668)
T PHA03372 212 RHGKTWFIIPIISFLLKNII--GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK 263 (668)
T ss_pred cCCceehHHHHHHHHHHhhc--CceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc
Confidence 34999999999988887532 235666664322 223445567898863
No 312
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=73.40 E-value=7.9 Score=49.96 Aligned_cols=70 Identities=14% Similarity=0.024 Sum_probs=51.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW~~ 460 (1138)
.|-|-|+++|.. ..+.+++-...|+|||.+.++-+++++.........+|+|+.++- ...-.+
T Consensus 4 ~Ln~~Q~~av~~----------------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~ 67 (715)
T TIGR01075 4 GLNDKQREAVAA----------------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRH 67 (715)
T ss_pred ccCHHHHHHHcC----------------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHH
Confidence 478899998852 235678888999999999999999988754444567899998654 445555
Q ss_pred HHHHHCC
Q 001149 461 EFMKWRP 467 (1138)
Q Consensus 461 E~~kw~p 467 (1138)
.+.+.++
T Consensus 68 Rl~~~~~ 74 (715)
T TIGR01075 68 RIGALLG 74 (715)
T ss_pred HHHHHhc
Confidence 5665554
No 313
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.28 E-value=33 Score=42.65 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=21.7
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
...|+.-+.|.|||..|-.|+..+..
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44688999999999999998877654
No 314
>PRK05642 DNA replication initiation factor; Validated
Probab=73.27 E-value=19 Score=39.59 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCCEEEEcCCcccCCccc---HHHHHHHhcc-cCeEEEEecC
Q 001149 532 GPDILVCDEAHMIKNTRA---DTTQALKQVK-CQRRIALTGS 569 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S---~~skal~~l~-~~~RllLTGT 569 (1138)
..|++|+|+.|.+.+... ..+..+..+. ..+++++|+|
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 457899999998865432 2344444443 4567888887
No 315
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=73.12 E-value=47 Score=39.32 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.4
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
..+.+.++.-..|+|||..+-.++..+..
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999998888776544
No 316
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=73.02 E-value=5.9 Score=41.74 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
..+.|.+|.-.+|.|||..|.|++..+...+ .+++.+.-. .+.++++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g----~~v~f~~~~----~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG----YSVLFITAS----DLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHH----HHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC----cceeEeecC----ceecccc
Confidence 4568899999999999999999998877642 466666433 3444554
No 317
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=72.98 E-value=34 Score=37.66 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
.+.-.+++-+.|.|||..++-|++..+..+ .++|+|.---...+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g----e~~lyvs~ee~~~~ 63 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG----EPGIYVALEEHPVQ 63 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC----CcEEEEEeeCCHHH
Confidence 456677899999999999999988766442 47788874333333
No 318
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.41 E-value=28 Score=43.22 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=22.0
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
+...|+.-..|.|||..|-.|+..+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345689999999999999888877653
No 319
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=72.41 E-value=12 Score=39.15 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=31.8
Q ss_pred ccCCCEEEEcCCcccCCc----ccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHh
Q 001149 530 QDGPDILVCDEAHMIKNT----RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 582 (1138)
Q Consensus 530 ~~~~dlVIlDEaH~iKN~----~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll 582 (1138)
...+|+||+||.=..-+. ...+...+..-...--++|||.=....+.|+..++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 458999999998644322 23444445444455579999975544444443333
No 320
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=72.18 E-value=27 Score=43.27 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=22.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
+...++.-+.|.|||-.|-+|+..+...
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 3445889999999999999988877543
No 321
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=71.88 E-value=15 Score=35.57 Aligned_cols=21 Identities=29% Similarity=0.195 Sum_probs=16.4
Q ss_pred EEEcCCCccHHHHHHHHHHHH
Q 001149 415 ILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 415 ILADeMGLGKTlqaIa~i~~l 435 (1138)
+|--..|.|||..+-+++..+
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 567789999998887776553
No 322
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=71.65 E-value=12 Score=44.65 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=21.7
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
....|.+|.-+.|.|||..|-++...
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHH
Confidence 35678999999999999998887654
No 323
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=71.55 E-value=11 Score=44.88 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.2
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
+...|+.-..|.|||..|.+|...++..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4567889999999999999998777543
No 324
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=71.28 E-value=39 Score=37.52 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=29.0
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH------HHHHHHHH
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH------NWKQEFMK 464 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~------qW~~E~~k 464 (1138)
..+.-++|.|||+..=|++..+. +..-++|+.|+.++. -|..++..
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 44568999999998875554442 223445677766543 36666643
No 325
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=71.04 E-value=23 Score=40.93 Aligned_cols=51 Identities=16% Similarity=-0.019 Sum_probs=37.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
.++|+|...-+.+...+. .+.-+..-++....|+||+..|.+|+..++...
T Consensus 3 ~~yPWl~~~~~~l~~~~~-------~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLD-------AGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHH-------cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478888887766644332 223456788899999999999999998887653
No 326
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=70.80 E-value=70 Score=40.77 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=22.6
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.+.+.||.-..|+|||..|.+|+..+..
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3456789999999999999888877643
No 327
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=70.76 E-value=1.7 Score=50.78 Aligned_cols=49 Identities=20% Similarity=0.525 Sum_probs=37.3
Q ss_pred CCCCcccccccCCC-----CceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 189 ADCSECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 189 ~d~~~~~C~~C~~g-----g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+|..+..|++|-+- ..++-||+|.-+-|+.| -|-. ..++|.|.|--|--
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~C----YGI~----f~peG~WlCrkCi~ 242 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSC----YGIQ----FLPEGFWLCRKCIY 242 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhc----ccce----ecCcchhhhhhhcc
Confidence 34566688888643 56999999999999999 4544 34679999988843
No 328
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.54 E-value=29 Score=42.73 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.7
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHH
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.++.-..|+|||..|.+|+..+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 488999999999999998887754
No 329
>PRK05580 primosome assembly protein PriA; Validated
Probab=70.46 E-value=30 Score=44.34 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=71.5
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...|||....+.++......|.++||.+........+.+.|+.. .|.....++|+++..+|.+...+..
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~-----------fg~~v~~~~s~~s~~~r~~~~~~~~ 238 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRAR-----------FGAPVAVLHSGLSDGERLDEWRKAK 238 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH-----------hCCCEEEEECCCCHHHHHHHHHHHH
Confidence 35689999998888877777999999999998888888777752 3678999999999998888877776
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG 886 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~ 886 (1138)
. +.+. ++++|+.. .=+.+.....||+=+.
T Consensus 239 ~---g~~~-IVVgTrsa-l~~p~~~l~liVvDEe 267 (679)
T PRK05580 239 R---GEAK-VVIGARSA-LFLPFKNLGLIIVDEE 267 (679)
T ss_pred c---CCCC-EEEeccHH-hcccccCCCEEEEECC
Confidence 5 3344 45666532 2244555666666543
No 330
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=70.28 E-value=1.2 Score=33.95 Aligned_cols=35 Identities=20% Similarity=0.575 Sum_probs=17.2
Q ss_pred CceeecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 203 SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 203 g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
..|+.|++|.-++|..| -|-.. ....+.|.|-.|.
T Consensus 2 n~ll~C~~C~v~VH~~C----YGv~~---~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSC----YGVSE---VPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHH----HT-SS-----SS-----HHH-
T ss_pred CceEEeCCCCCcCChhh----CCccc---CCCCCcEECCcCC
Confidence 36899999999999999 34332 2233469998873
No 331
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.19 E-value=50 Score=38.08 Aligned_cols=128 Identities=19% Similarity=0.186 Sum_probs=67.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELL 490 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l 490 (1138)
+.-.++.---|.|||-++-=+.+.+... .+++|+.+--+-..-=. +.+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~----g~~VllaA~DTFRAaAi----------------------------EQL 186 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ----GKSVLLAAGDTFRAAAI----------------------------EQL 186 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC----CCeEEEEecchHHHHHH----------------------------HHH
Confidence 3445556889999997755555555433 24666655433222222 333
Q ss_pred HHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCccc------HHHHHHHhc--ccCe
Q 001149 491 AKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRA------DTTQALKQV--KCQR 562 (1138)
Q Consensus 491 ~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~S------~~skal~~l--~~~~ 562 (1138)
..|...-++-+++.. .- ... ..-..+.+.+....++|+|++|=|=|+-|... ++.+.+... .++|
T Consensus 187 ~~w~er~gv~vI~~~-~G-----~Dp-AaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~ 259 (340)
T COG0552 187 EVWGERLGVPVISGK-EG-----ADP-AAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPH 259 (340)
T ss_pred HHHHHHhCCeEEccC-CC-----CCc-HHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCc
Confidence 344343444444321 00 000 00122344555566999999999999877542 222222222 3456
Q ss_pred EEEEe--cCCCCCChhH
Q 001149 563 RIALT--GSPLQNNLME 577 (1138)
Q Consensus 563 RllLT--GTPlqNnl~E 577 (1138)
.++|+ ||-=||.+.-
T Consensus 260 e~llvlDAttGqnal~Q 276 (340)
T COG0552 260 EILLVLDATTGQNALSQ 276 (340)
T ss_pred eEEEEEEcccChhHHHH
Confidence 66555 7777776654
No 332
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=70.14 E-value=14 Score=47.67 Aligned_cols=71 Identities=15% Similarity=0.054 Sum_probs=50.6
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchH-HHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll-~qW~ 459 (1138)
..|-|-|+++|.+ ..+..++-...|+|||.+.+.-+++++.........+|+|+-++-. ..-+
T Consensus 8 ~~Ln~~Q~~av~~----------------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~ 71 (721)
T PRK11773 8 DSLNDKQREAVAA----------------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMR 71 (721)
T ss_pred HhcCHHHHHHHhC----------------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHH
Confidence 4688999999863 2245677778999999999999999886544445678999886543 3455
Q ss_pred HHHHHHCC
Q 001149 460 QEFMKWRP 467 (1138)
Q Consensus 460 ~E~~kw~p 467 (1138)
+.+.+.++
T Consensus 72 ~Rl~~~~~ 79 (721)
T PRK11773 72 HRIEQLLG 79 (721)
T ss_pred HHHHHHhc
Confidence 55555443
No 333
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=70.12 E-value=1.7 Score=45.88 Aligned_cols=56 Identities=16% Similarity=0.346 Sum_probs=35.8
Q ss_pred CCcccccccCCCCceeecCCccccccccccccCCCcc--cccc----cccCCCceeecCCcc
Q 001149 191 CSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEA--CLSD----EVQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~--~~~~----~~~~~~W~C~~C~~~ 246 (1138)
+.+..|.+|.+.-.--.--.|...||..||...+-.. .... ........|++|...
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 4456899998766544445699999999997543211 0000 013356789999754
No 334
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=69.40 E-value=20 Score=45.93 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=72.5
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...|||-.+..-.+......|.+++|.+.....+..+.+.+..+.. ..|+.+..++|+++..+|...+....
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~--------~~~i~v~ll~G~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE--------PLGIRVALLTGSLKGKERREILEAIA 361 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh--------hcCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 4579999876655544456688999999988777766666665311 14789999999999999999999987
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG 886 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~ 886 (1138)
+ +.+.|++.+.......+.+.....||+=+.
T Consensus 362 ~---g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 362 S---GEADIVIGTHALIQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred C---CCCCEEEchHHHhcccchhcccceEEEech
Confidence 5 345555544444555667777776666433
No 335
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=69.35 E-value=17 Score=42.88 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
.+.|.+|.-+.|+|||..|-++...
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999988877654
No 336
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=69.03 E-value=1.5 Score=53.21 Aligned_cols=54 Identities=24% Similarity=0.535 Sum_probs=35.3
Q ss_pred CCCcccccccCCC--------CceeecCC--ccccccccccccC--CCcccccccccCCCceeecCCc
Q 001149 190 DCSECYCVWCGRS--------SDLVSCKS--CKTLFCTTCVKRN--ISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 190 d~~~~~C~~C~~g--------g~l~~Cd~--C~~~f~~~C~~~~--~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
|-+---|-||-+- |-.+-|.. |-+.||+.|-.+. +.++.- ...+..=+|.+|.-
T Consensus 114 dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~g--n~~dNVKYCGYCk~ 179 (900)
T KOG0956|consen 114 DRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEG--NISDNVKYCGYCKY 179 (900)
T ss_pred hhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccc--cccccceechhHHH
Confidence 3333459999766 45677865 9999999997643 333321 23445678999953
No 337
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=68.92 E-value=47 Score=36.46 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=31.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
.+.-.++.-+.|.|||.-+..+++.+...+ .+++.|+......+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g----~~~~yi~~e~~~~~ 66 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG----YSVSYVSTQLTTTE 66 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEEeCCCCHHH
Confidence 455678889999999999988888765442 46677775443333
No 338
>PRK13342 recombination factor protein RarA; Reviewed
Probab=68.83 E-value=22 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.043 Sum_probs=19.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLY 433 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~ 433 (1138)
.....||.-+.|+|||..|-++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999987776654
No 339
>PRK11823 DNA repair protein RadA; Provisional
Probab=68.79 E-value=51 Score=40.02 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=34.7
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 464 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~k 464 (1138)
+.-.+|+-++|.|||..++.++...... ..++|.|.--....|......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~----g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA----GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccccHHHHHHHHHH
Confidence 3445789999999999999988776532 2478888765555555444443
No 340
>PF13173 AAA_14: AAA domain
Probab=68.33 E-value=11 Score=37.01 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=26.5
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhc---ccCeEEEEecCCCC
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQV---KCQRRIALTGSPLQ 572 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l---~~~~RllLTGTPlq 572 (1138)
+..+||+||+|++.+ ....++.+ ....++++||+-..
T Consensus 61 ~~~~i~iDEiq~~~~----~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD----WEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhcc----HHHHHHHHHHhccCceEEEEccchH
Confidence 678899999999965 33444444 23569999998643
No 341
>CHL00206 ycf2 Ycf2; Provisional
Probab=68.32 E-value=23 Score=49.44 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
....|.+|.-.+|+|||+-|=|++... .-|.+-|....++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es-------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS-------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc-------CCceEEEEHHHHhhcc
Confidence 346799999999999999888877543 2356666666667665
No 342
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=68.01 E-value=34 Score=43.29 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.|.-.+.||.+ ..+..+...|... -. -.+.+.|..+ .|..++++|....+....-+|+.|....+
T Consensus 470 ~G~~lvLfTS~-~~~~~~~~~l~~~-----------l~-~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 470 QGGTLVLTTAF-SHISAIGQLVELG-----------IP-AEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred CCCEEEEechH-HHHHHHHHHHHhh-----------cC-CCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 34445555554 4555566666531 01 1245566543 56789999987411111226899999999
Q ss_pred CCCc--------c--cCCEEEEEcCCCCcchHHHHHHHHHhh
Q 001149 872 GINL--------H--SANRVIIVDGSWNPTYDLQAIYRAWRY 903 (1138)
Q Consensus 872 GLNL--------t--~An~VIi~D~~WNP~~~~QAigR~~Ri 903 (1138)
|+|+ . ....|||.-.|+-|.... .|+.|+
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~---a~~~~~ 573 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSL---SMLKRI 573 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCCCcCChH---HHHHHH
Confidence 9999 3 478999999998774332 555554
No 343
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=68.00 E-value=16 Score=43.54 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
..+.|.+|.-..|.|||..|=+++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999988776644
No 344
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=67.89 E-value=14 Score=47.26 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWKQE 461 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~~E 461 (1138)
|-|-|+++|.+ ..+.+++....|+|||.+.++-+++++.........+|+|+.+.-.. .-.+.
T Consensus 3 Ln~~Q~~av~~----------------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~R 66 (672)
T PRK10919 3 LNPGQQQAVEF----------------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 (672)
T ss_pred CCHHHHHHHhC----------------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHH
Confidence 67889998863 23556677889999999999999998865333346799999865443 44455
Q ss_pred HHHHCC
Q 001149 462 FMKWRP 467 (1138)
Q Consensus 462 ~~kw~p 467 (1138)
+.+.++
T Consensus 67 l~~~l~ 72 (672)
T PRK10919 67 VAQTLG 72 (672)
T ss_pred HHHHhC
Confidence 554443
No 345
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=67.81 E-value=15 Score=46.91 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQE 461 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~~E 461 (1138)
|-|-|+.+|.+ ..+.+++-...|+|||-+.+.-+..++.......+.+|+|+. .....+-...
T Consensus 2 Ln~~Q~~av~~----------------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~R 65 (664)
T TIGR01074 2 LNPQQQEAVEY----------------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKER 65 (664)
T ss_pred CCHHHHHHHhC----------------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHH
Confidence 56788888753 235677788999999999999999888653333456788875 4455566666
Q ss_pred HHHHCC
Q 001149 462 FMKWRP 467 (1138)
Q Consensus 462 ~~kw~p 467 (1138)
+.+.++
T Consensus 66 l~~~l~ 71 (664)
T TIGR01074 66 VAKTLG 71 (664)
T ss_pred HHHHhC
Confidence 766554
No 346
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.51 E-value=40 Score=40.24 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.5
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
....|+.-..|.|||..|.+|...+..
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455788999999999999998877754
No 347
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=67.28 E-value=8.4 Score=44.25 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred CEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCC
Q 001149 534 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQN 573 (1138)
Q Consensus 534 dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqN 573 (1138)
-+||+||||+ ..-.+.--.+.+|-...+..+||.+.|=
T Consensus 245 AfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQi 282 (348)
T COG1702 245 AFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQI 282 (348)
T ss_pred eEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccc
Confidence 4699999996 1222233345566778899999999773
No 348
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=67.13 E-value=22 Score=49.83 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=45.7
Q ss_pred CchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchH
Q 001149 376 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 455 (1138)
Q Consensus 376 p~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll 455 (1138)
+..+...|-+-|++++..++. +...-.+|----|.|||.+.-+++..+..........++.++|.+-.
T Consensus 961 ~~~~~~~Lt~~Q~~Av~~il~------------s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 961 PGELMEGLTSGQRAATRMILE------------STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred HHHhcCCCCHHHHHHHHHHHh------------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 334445688999999987753 33457788899999999887666655432211122457778897654
Q ss_pred H
Q 001149 456 H 456 (1138)
Q Consensus 456 ~ 456 (1138)
.
T Consensus 1029 A 1029 (1747)
T PRK13709 1029 V 1029 (1747)
T ss_pred H
Confidence 4
No 349
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=67.12 E-value=49 Score=34.17 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=19.5
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.++.-..|.|||..+..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3567889999999998888766543
No 350
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=67.02 E-value=47 Score=36.28 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=36.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
.+.-.+++-+.|.|||.-+..|++..... ..++++|.=-....+..+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCCCHHHHHHHHHHC
Confidence 34557788999999999999998776543 34777777555555555555443
No 351
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=67.00 E-value=2.9 Score=54.80 Aligned_cols=137 Identities=30% Similarity=0.358 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHh--hcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 778 KMVLLLDILTMC--SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 778 Kl~~L~eiL~~~--~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
|+..+...+..+ .+...|||||||+...+|.++..+.. +++.+.+..+ +. +-...+..|..
T Consensus 1204 kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~------------N~I~~~~~~~-t~--d~~dc~~~fk~-- 1266 (1394)
T KOG0298|consen 1204 KIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLM------------NLIKKQLDGE-TE--DFDDCIICFKS-- 1266 (1394)
T ss_pred CchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHh------------hhhHhhhccC-Cc--chhhhhhhccc--
Confidence 444443333322 23347999999999999999998875 5676655544 43 55678888874
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGL 934 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l 934 (1138)
+.|||+-++.|+-|+||..|.||++.+|--||+.+.||+||+||+||++|++||||+..+|+|+.|+.....|...
T Consensus 1267 ---I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~ 1342 (1394)
T KOG0298|consen 1267 ---IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEET 1342 (1394)
T ss_pred ---ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999987777543
No 352
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=66.98 E-value=35 Score=39.90 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
++|+|...-+.+.. . .+.-+.+.++.-..|.|||..|.+|+..++...
T Consensus 2 ~yPW~~~~~~~l~~----~-----~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQA----L-----RARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHH----h-----cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888776554432 1 123456777899999999999999998887643
No 353
>PHA02929 N1R/p28-like protein; Provisional
Probab=66.40 E-value=2.4 Score=46.56 Aligned_cols=46 Identities=20% Similarity=0.474 Sum_probs=30.8
Q ss_pred CCcccccccCCCCce--------eecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 191 CSECYCVWCGRSSDL--------VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~~gg~l--------~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..+..|.+|.+.-.- ..=..|..+||..||...+... . .||+|.-.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~--------~--tCPlCR~~ 225 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK--------N--TCPVCRTP 225 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC--------C--CCCCCCCE
Confidence 345689999886321 1223689999999987654321 1 59999753
No 354
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.15 E-value=40 Score=42.50 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.8
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
...|+.-.-|.|||..+.+|+..++.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44588999999999999998887764
No 355
>CHL00095 clpC Clp protease ATP binding subunit
Probab=65.97 E-value=20 Score=47.02 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=21.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
...+.||.-+.|.|||..+-++...+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999888776654
No 356
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=65.97 E-value=25 Score=46.40 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=21.9
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
....+.||.-+.|.|||..+-+++..+
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 345788999999999999888876654
No 357
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.93 E-value=1.5e+02 Score=35.70 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=44.2
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhc-----ccCeEEEEecCCCCCChhHHHHHhhhhccC-----------CCCChHH
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQV-----KCQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLGSSHE 595 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l-----~~~~RllLTGTPlqNnl~El~~ll~fL~p~-----------~lg~~~e 595 (1138)
++++|++|.+=+..+ .......+..+ .....++|++|--.+.+.++...+..+.+. .+|..-.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~ 347 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALD 347 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHH
Confidence 667888888633222 12233333333 234568899997777777777666655543 3455556
Q ss_pred HHhhccCCcccC
Q 001149 596 FRNRFQNPIENG 607 (1138)
Q Consensus 596 F~~~f~~pi~~g 607 (1138)
+...+..|+..-
T Consensus 348 ~~~~~~lPi~yv 359 (420)
T PRK14721 348 AVIRRKLVLHYV 359 (420)
T ss_pred HHHHhCCCEEEE
Confidence 666666776543
No 358
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=65.24 E-value=16 Score=44.86 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=37.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhc--ccCCCceEEEeCcchHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSV--NLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~--~~~~k~vLIV~P~sll~qW~~E 461 (1138)
++.-.|+--.-|+|||-.|+-=+++++... ....+++||+.|+.+..-....
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 344556678899999988877666665432 2346789999999887765443
No 359
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=64.76 E-value=19 Score=44.25 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
....|.+|.-..|.|||..+-+++..+
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 356789999999999999888877655
No 360
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=64.51 E-value=51 Score=35.85 Aligned_cols=37 Identities=14% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCCEEEEcCCcccCCccc---HHHHHHHhc-ccCeEEEEec
Q 001149 532 GPDILVCDEAHMIKNTRA---DTTQALKQV-KCQRRIALTG 568 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S---~~skal~~l-~~~~RllLTG 568 (1138)
..|++|+|..|.+.+... ..+..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 789999999999987542 233333333 4456777777
No 361
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=64.48 E-value=67 Score=38.89 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=26.0
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
+.-.++.-..|.|||.++..++..+... + +++++|..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~---g-~kV~lV~~ 131 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK---G-LKVGLVAA 131 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc---C-CeEEEecC
Confidence 4456778999999999988887766433 2 35555553
No 362
>PRK04328 hypothetical protein; Provisional
Probab=64.47 E-value=61 Score=35.99 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.7
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
+.-.+++-+.|.|||..++-|++..+..+ .++++|.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~g----e~~lyis 58 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG----EPGVYVA 58 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEE
Confidence 45566799999999999999988765543 3667776
No 363
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=64.46 E-value=49 Score=34.13 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=35.6
Q ss_pred cCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhcc
Q 001149 531 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 587 (1138)
Q Consensus 531 ~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p 587 (1138)
..+|+||+|=...+- .....+..+.....+++..+|-.-++.+...++.++..
T Consensus 66 ~~yD~VIiD~pp~~~----~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTG----DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCc----HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 489999999877642 11111222234466667678888889888888888764
No 364
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=64.30 E-value=43 Score=41.02 Aligned_cols=41 Identities=10% Similarity=-0.140 Sum_probs=25.4
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
.-++|.-.=|=|||..+.++..+.+-.......-++++++.
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 45777778899999988777665543322112345555554
No 365
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.25 E-value=92 Score=38.55 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=23.6
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
+.-.+|.-..|.|||..+..++..+.... ..+.+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~--~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQH--APRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEe
Confidence 34444567799999998877776654332 123555554
No 366
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=64.12 E-value=1.3e+02 Score=33.86 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=29.9
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC----cchHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP----VNVLHNWKQEF 462 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P----~sll~qW~~E~ 462 (1138)
+....+.-..|.|||..+..+...+... ..++.+|.- ...+.||....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~----~~~v~~i~~D~~ri~~~~ql~~~~ 126 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK----KKTVGFITTDHSRIGTVQQLQDYV 126 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEecCCCCHHHHHHHHHHh
Confidence 3566777889999998776666554322 235555554 24666776443
No 367
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=64.09 E-value=24 Score=45.74 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
...|.+|.-..|.|||..|-++.... ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~-------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES-------GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc-------CCCEEEEehHHHhhcc
Confidence 45788999999999999888776543 2355656555554444
No 368
>PRK10865 protein disaggregation chaperone; Provisional
Probab=63.95 E-value=25 Score=46.26 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
....+.||.-+.|.|||..+-++...+
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999888777654
No 369
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=63.56 E-value=3.2 Score=50.68 Aligned_cols=44 Identities=25% Similarity=0.647 Sum_probs=35.0
Q ss_pred cccccCCCC-----ceeecCC--ccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSS-----DLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg-----~l~~Cd~--C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
-|-||.|-. -|+-||. |.-+-|+.| .|.. ..+.++|+|--|...
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaC----YGIv----qVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQAC----YGIV----QVPTGPWFCRKCESQ 57 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhc----ceeE----ecCCCchhhhhhhhh
Confidence 477887543 5999998 999999999 5554 457899999999653
No 370
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=63.56 E-value=55 Score=41.01 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.+...|+.-.-|+|||..|-.|...+..
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3455677999999999999888877653
No 371
>PHA02926 zinc finger-like protein; Provisional
Probab=63.39 E-value=2.2 Score=45.56 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=32.4
Q ss_pred cccccccCCCC---cee------ecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRSS---DLV------SCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~gg---~l~------~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+.- .+. .=+.|..+||..||....... ........||+|.-.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r----~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTR----RETGASDNCPICRTR 228 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhc----cccCcCCcCCCCcce
Confidence 45799998642 111 114589999999998765432 112346789999753
No 372
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=63.35 E-value=8.7 Score=45.32 Aligned_cols=60 Identities=18% Similarity=0.445 Sum_probs=42.6
Q ss_pred eeccCCCc-ccccccccccccccCcccHhhHhhcCcccC-----CCCCc------ccccccCCCCceeecCCccccc
Q 001149 151 YCTACNNV-AIEVHPHPILNVIVCKDCKCLLEKKMHVKD-----ADCSE------CYCVWCGRSSDLVSCKSCKTLF 215 (1138)
Q Consensus 151 ~C~~C~~~-~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d-----~d~~~------~~C~~C~~gg~l~~Cd~C~~~f 215 (1138)
+|-.|--+ ..++ =+.+.|..|--..+++-|..+ ..|+. .||.-|-.|-.+--|..||.-|
T Consensus 121 iCcVClg~rs~da-----~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~ 192 (707)
T KOG0957|consen 121 ICCVCLGQRSVDA-----GEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRF 192 (707)
T ss_pred EEEEeecCccccc-----cceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcC
Confidence 77777332 1221 133678888888888888776 23332 4899999999999999999876
No 373
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=63.31 E-value=4.8 Score=38.66 Aligned_cols=32 Identities=28% Similarity=0.789 Sum_probs=27.2
Q ss_pred CcccccccCC-CCceeecCC--ccccccccccccC
Q 001149 192 SECYCVWCGR-SSDLVSCKS--CKTLFCTTCVKRN 223 (1138)
Q Consensus 192 ~~~~C~~C~~-gg~l~~Cd~--C~~~f~~~C~~~~ 223 (1138)
....|.+|+. +|-++-|.. |.+.||..|....
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHHC
Confidence 4458999997 688999988 9999999997654
No 374
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=63.18 E-value=93 Score=35.40 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=19.8
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
...+|.-+.|.|||..+-+++..+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999998888776655
No 375
>PF01197 Ribosomal_L31: Ribosomal protein L31; InterPro: IPR002150 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3D5D_4 3PYO_1 3D5B_4 3PYV_1 3PYT_1 3MRZ_1 3MS1_1 3PYR_1 3F1F_4 3F1H_4 ....
Probab=63.00 E-value=5.4 Score=35.19 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=32.3
Q ss_pred CceeeccCCCccc--ccccccccccccCcccHhhHhhcCcccCCCCC
Q 001149 148 EKFYCTACNNVAI--EVHPHPILNVIVCKDCKCLLEKKMHVKDADCS 192 (1138)
Q Consensus 148 ~~~~C~~C~~~~~--~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~ 192 (1138)
-.|.|++||.... ....-|++.+-+|..|..+|.-..-..|..|-
T Consensus 12 v~v~c~s~g~~~~~~St~~~~~~~vdi~s~~HPfytG~~~~~~~~Gr 58 (69)
T PF01197_consen 12 VKVTCSSCGNTFETRSTKEYPVIKVDICSNCHPFYTGKQKVVDTAGR 58 (69)
T ss_dssp EEEEES-SSSCECECSSSSES-EEECSCSSSSCTTCSCSSCSCCCCC
T ss_pred EEEEEcCCCCEEEEEECCcceEEEEeecCCCCEEEcCcEEEEccccC
Confidence 4599999998743 23356779999999999999887666665553
No 376
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=62.95 E-value=32 Score=43.73 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=70.7
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...|||-.+..-.+......|.+++|-+.....+..+.+.+..+.. ..|+++..++|+++..+|..+++...
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~--------~~gi~v~lltg~~~~~~r~~~~~~i~ 335 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLA--------PLGIEVALLTGSLKGKRRKELLETIA 335 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhc--------ccCcEEEEEecCCCHHHHHHHHHHHh
Confidence 3568998765543334445688999999988777777666665321 13789999999999999999998887
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG 886 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~ 886 (1138)
+ +.+.|++.+....-..+.+.....||+=+.
T Consensus 336 ~---g~~~IiVgT~~ll~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 336 S---GQIHLVVGTHALIQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred C---CCCCEEEecHHHHhccccccccceEEEech
Confidence 5 345555555444545666777766665333
No 377
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=62.57 E-value=49 Score=42.43 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.3
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
....|+.-+.|.|||..|-+|+..+..
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 445688999999999999998877654
No 378
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=62.55 E-value=62 Score=33.89 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=37.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcc------cCCCceEEEeCcchHHHHHHHHHHHC
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVN------LGLRTALIVTPVNVLHNWKQEFMKWR 466 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~------~~~k~vLIV~P~sll~qW~~E~~kw~ 466 (1138)
|.=++++-..|.|||.-++.++..+..... ....++|+|..-.-..++..-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 445889999999999999999888764211 12458888887766667776666654
No 379
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=62.48 E-value=30 Score=45.53 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=21.3
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
....+.||.-+.|.|||..+=+++..+
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999998876666554
No 380
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=62.24 E-value=35 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=19.6
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLY 433 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~ 433 (1138)
......||.-+.|+|||..|-++..
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999987766654
No 381
>PRK05973 replicative DNA helicase; Provisional
Probab=62.18 E-value=92 Score=34.45 Aligned_cols=38 Identities=32% Similarity=0.317 Sum_probs=29.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
+|.-.+++-..|.|||.-++-|+...... ..+++++.-
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfSl 100 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFTL 100 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEE
Confidence 45567889999999999999998877544 247888874
No 382
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=62.07 E-value=47 Score=44.62 Aligned_cols=132 Identities=18% Similarity=0.148 Sum_probs=75.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E 461 (1138)
.|-+-|.++|..+. ....-++|--.-|.|||...-++...+... ..+++.++|..-..+=
T Consensus 381 ~Ls~eQ~~Av~~i~-------------~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~----G~~V~g~ApTgkAA~~--- 440 (1102)
T PRK13826 381 RLSDEQKTAIEHVA-------------GPARIAAVVGRAGAGKTTMMKAAREAWEAA----GYRVVGGALAGKAAEG--- 440 (1102)
T ss_pred CCCHHHHHHHHHHh-------------ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEcCcHHHHHH---
Confidence 58889999987652 123457788899999998776655443222 3478888887655432
Q ss_pred HHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCC
Q 001149 462 FMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEA 541 (1138)
Q Consensus 462 ~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEa 541 (1138)
+..-.. +....++. ++..|... + .....-++||||||
T Consensus 441 L~e~~G-----i~a~TIas--------~ll~~~~~-----------~-------------------~~l~~~~vlVIDEA 477 (1102)
T PRK13826 441 LEKEAG-----IQSRTLSS--------WELRWNQG-----------R-------------------DQLDNKTVFVLDEA 477 (1102)
T ss_pred HHHhhC-----CCeeeHHH--------HHhhhccC-----------c-------------------cCCCCCcEEEEECc
Confidence 221111 11111100 00111000 0 00113578999999
Q ss_pred cccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhHH
Q 001149 542 HMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEY 578 (1138)
Q Consensus 542 H~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~El 578 (1138)
..+-.. .....+..+ ...-+++|.|=|-|-.+.+-
T Consensus 478 sMv~~~--~m~~Ll~~~~~~garvVLVGD~~QL~~V~a 513 (1102)
T PRK13826 478 GMVASR--QMALFVEAVTRAGAKLVLVGDPEQLQPIEA 513 (1102)
T ss_pred ccCCHH--HHHHHHHHHHhcCCEEEEECCHHHcCCCCC
Confidence 988432 344555555 46789999999987655443
No 383
>CHL00176 ftsH cell division protein; Validated
Probab=62.07 E-value=32 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=20.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...|.+|.-+.|+|||..|=+++..
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999988877543
No 384
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=61.65 E-value=54 Score=45.67 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=81.0
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 378 SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 378 ~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
.+...|-+-|++++..++. +...-.+|--.-|.|||.++-+++..+..........++.++|.+-...
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLt------------s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~ 898 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILE------------TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG 898 (1623)
T ss_pred hhhcccCHHHHHHHHHHHh------------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH
Confidence 3445789999999987653 2345678889999999988655554432211111245777889765443
Q ss_pred HHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 458 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 458 W~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
=..+. + +. ...+..|.... ..+.. .........++||
T Consensus 899 ~L~e~-----G----i~------------A~TIasfL~~~-------~~~~~---------------~~~~~~~~~~llI 935 (1623)
T PRK14712 899 EMRSA-----G----VD------------AQTLASFLHDT-------QLQQR---------------SGETPDFSNTLFL 935 (1623)
T ss_pred HHHHh-----C----ch------------HhhHHHHhccc-------cchhh---------------cccCCCCCCcEEE
Confidence 22221 0 00 01112221100 00000 0000001457999
Q ss_pred EcCCcccCCcccHHHHHHHhcc-cCeEEEEecCCCCCChhHHHHHhh
Q 001149 538 CDEAHMIKNTRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVD 583 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l~-~~~RllLTGTPlqNnl~El~~ll~ 583 (1138)
||||=.+-+. ...+.+..+. ..-|++|.|=+-|-...+--..|.
T Consensus 936 VDEASMV~~~--~m~~ll~~~~~~garvVLVGD~~QL~sV~aG~~F~ 980 (1623)
T PRK14712 936 LDESSMVGNT--DMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFR 980 (1623)
T ss_pred EEccccccHH--HHHHHHHhhhhCCCEEEEEcchhhcCCCCCCHHHH
Confidence 9999988543 3445555554 357899999988765544333333
No 385
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=61.55 E-value=22 Score=42.50 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.9
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
..+.+.|+--..|+|||..+.++...
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 35689999999999999888887655
No 386
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=60.76 E-value=2.5e+02 Score=30.98 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.7
Q ss_pred CccHHHHHHHHHHHHHHhcccCCCceEEEe--CcchHHHHHHHHH
Q 001149 421 GLGKTFQVIAFLYTAMRSVNLGLRTALIVT--PVNVLHNWKQEFM 463 (1138)
Q Consensus 421 GLGKTlqaIa~i~~l~~~~~~~~k~vLIV~--P~sll~qW~~E~~ 463 (1138)
|.|||-.++++...+...+ +++.||= |..-+..|.+-..
T Consensus 12 GaGKTT~~~~LAs~la~~G----~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARG----ARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCcHHHHHHHHHHHHHHCC----CeEEEEeCCCCCcHHHHHHhcc
Confidence 7899999888888776553 3566654 7778889966543
No 387
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=60.76 E-value=76 Score=37.47 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=38.8
Q ss_pred ccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 373 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 373 ~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
-++|.. ..-|.-|+..+...+...+ .+..+.+.++.-.+|.|||.++--++..+...
T Consensus 13 ~~iP~~--l~~Re~ei~~l~~~l~~~~-------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 13 DYIPEE--LPHREEEINQLASFLAPAL-------RGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred CCCccc--ccccHHHHHHHHHHHHHHh-------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 345555 3357778877766655433 23456679999999999999887777665443
No 388
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=60.45 E-value=21 Score=42.64 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=38.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
....|.+|+-..|.|||+.+.|++... .-++.=|.|.+|..-|.-|.++.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~-------~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATES-------GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhh-------cceEeeccHHHhhhhccChHHHH
Confidence 355788999999999999988877553 23567778888888887666543
No 389
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=59.90 E-value=5.7 Score=40.76 Aligned_cols=48 Identities=27% Similarity=0.662 Sum_probs=31.9
Q ss_pred ccccC------CCCceeecCCccccccccccccCCCcccccccccCCCc--eeecC
Q 001149 196 CVWCG------RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCW--QCCCC 243 (1138)
Q Consensus 196 C~~C~------~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W--~C~~C 243 (1138)
|.+|+ .-|-||-|-.|..+||+.||..--.+.-+--....+.. +|-.|
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~C 57 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRC 57 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhh
Confidence 77775 34789999999999999997655555444323333432 35555
No 390
>PRK08939 primosomal protein DnaI; Reviewed
Probab=59.59 E-value=28 Score=40.01 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 455 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll 455 (1138)
.+.|.+|.-..|.|||..+.|++..+...+ .++++|.-+.++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g----~~v~~~~~~~l~ 196 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG----VSSTLLHFPEFI 196 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC----CCEEEEEHHHHH
Confidence 567888999999999999999988876432 355555433333
No 391
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.16 E-value=83 Score=39.92 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=23.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
+...|+.-+.|+|||..|.+|+..+...
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 3567889999999999999998887643
No 392
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=59.07 E-value=6.1 Score=43.87 Aligned_cols=94 Identities=26% Similarity=0.497 Sum_probs=58.5
Q ss_pred ccccccccCCCCceeeccCCCcccccccccccccccCcccHhhHhhc--------------CcccCC---CCCccccccc
Q 001149 137 TDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKK--------------MHVKDA---DCSECYCVWC 199 (1138)
Q Consensus 137 ~~~~~~~~~~~~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~--------------~~~~d~---d~~~~~C~~C 199 (1138)
+-+.-.+++....++|..|-.. |+.-| +.|+.|.-.+... .|..-+ ...-..|.+|
T Consensus 296 s~CaCHs~~~~gGy~CP~Cktk---VCsLP----i~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~C 368 (421)
T COG5151 296 SVCACHSEVKGGGYECPVCKTK---VCSLP----ISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVC 368 (421)
T ss_pred cceeeeeeeccCceeCCcccce---eecCC----ccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceec
Confidence 3455567777888999999543 33333 4688887654433 333333 2334579999
Q ss_pred CC--------------CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 200 GR--------------SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 200 ~~--------------gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
.. ...-+-|..|...||..|-. .+ -+---+|+-|..++
T Consensus 369 Q~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv-fi---------He~Lh~C~gCe~~~ 420 (421)
T COG5151 369 QGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV-FI---------HETLHFCIGCELPH 420 (421)
T ss_pred cCCCCCCCCCcccccccccceechhhhhhhhhhhHH-HH---------HHHHhhCCCCcCCC
Confidence 76 13346799999999999921 11 11224699997554
No 393
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=58.81 E-value=39 Score=35.50 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.....+|.-+.|.|||-.+.+++..++..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34567889999999999999988887643
No 394
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=58.77 E-value=36 Score=44.06 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
...+.||.-+.|.|||..+-++....
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45788999999999999887776544
No 395
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.76 E-value=91 Score=39.22 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=22.1
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
....|+.-.-|.|||..|.+|+..+..
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 445688999999999999998877654
No 396
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=58.66 E-value=59 Score=34.74 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCEEEEcCCcccCCcccHHHHHHHhccc--CeEEEEecC
Q 001149 533 PDILVCDEAHMIKNTRADTTQALKQVKC--QRRIALTGS 569 (1138)
Q Consensus 533 ~dlVIlDEaH~iKN~~S~~skal~~l~~--~~RllLTGT 569 (1138)
.+.|.+||||-+.. .+...+..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998843 45566666633 566777663
No 397
>PRK14873 primosome assembly protein PriA; Provisional
Probab=58.64 E-value=41 Score=42.87 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCC-ceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKG-KDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~G-i~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
.|+|.++.++++......|..+||...-......+...|+.. .| ..+..+++..+..+|.+.-.+..+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~-----------f~~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRAL-----------LGAGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHH-----------cCCCcEEEECCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999999999999888888888863 34 678999999999999888888775
Q ss_pred CCCCCceEEEeecccc
Q 001149 854 PLNKRVKCTLISTRAG 869 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaG 869 (1138)
+.++ ++|.|+++
T Consensus 239 ---G~~~-IViGtRSA 250 (665)
T PRK14873 239 ---GQAR-VVVGTRSA 250 (665)
T ss_pred ---CCCc-EEEEccee
Confidence 4454 46666654
No 398
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=58.57 E-value=73 Score=37.00 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=23.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
-+...++.-+-|.|||..|.+|+..++..
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 34556899999999999999998887654
No 399
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=58.33 E-value=68 Score=46.15 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=42.6
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 456 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~ 456 (1138)
..|-+-|+.++..++. +...-.++--.-|.|||.+..+++..+..........++.++|.+-..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~------------~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa 1081 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS------------TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV 1081 (1960)
T ss_pred CCCCHHHHHHHHHHHh------------CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4689999999987643 334566777899999998886554443332222234677788976544
No 400
>PRK04195 replication factor C large subunit; Provisional
Probab=58.19 E-value=74 Score=39.04 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=20.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
.....+|.-+.|.|||..|-+++..
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999887776554
No 401
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=57.71 E-value=3.1 Score=49.11 Aligned_cols=71 Identities=21% Similarity=0.427 Sum_probs=50.1
Q ss_pred cccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceee
Q 001149 162 VHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC 241 (1138)
Q Consensus 162 ~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~ 241 (1138)
+.-||-|.... ......|++-+.-.|..|.+..+-..=..|...||..||.-- .........-.|+
T Consensus 514 ~aDHP~LVl~S---------~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~ey-----v~~f~~~~nvtCP 579 (791)
T KOG1002|consen 514 AADHPDLVLYS---------ANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEY-----VESFMENNNVTCP 579 (791)
T ss_pred hccCcceeeeh---------hhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHH-----HHhhhcccCCCCc
Confidence 34799996553 233344566666689999999998888889999999998532 2223344557899
Q ss_pred cCCcc
Q 001149 242 CCSPS 246 (1138)
Q Consensus 242 ~C~~~ 246 (1138)
.|.-.
T Consensus 580 ~C~i~ 584 (791)
T KOG1002|consen 580 VCHIG 584 (791)
T ss_pred ccccc
Confidence 99643
No 402
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=56.83 E-value=91 Score=37.99 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=36.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 464 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~k 464 (1138)
++.-.+|+-+.|.|||..++.++..+... .+++|.|..-....|......+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~----g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN----QMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECcCCHHHHHHHHHH
Confidence 34456889999999999998887766443 2478888876666666554444
No 403
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=56.71 E-value=50 Score=42.82 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
...+.||.-+.|.|||..+-++...+.
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999998888776653
No 404
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=56.67 E-value=2.4 Score=33.59 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=24.8
Q ss_pred cccccCC----CCceeecCCccccccccccccCCCcccccccccCCCceeecC
Q 001149 195 YCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 195 ~C~~C~~----gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
.|.+|.+ +..++... |...||..||...+... -.||+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----------~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----------NSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----------SB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----------CcCCcc
Confidence 5677753 33455555 99999999987665321 278888
No 405
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.62 E-value=75 Score=39.06 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=20.2
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
...++.-+.|.|||..|-.+...+.
T Consensus 39 hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 39 HAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999998888877664
No 406
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=56.43 E-value=28 Score=45.08 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=47.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW~~ 460 (1138)
.|-|-|+.+|... .+..++-...|+|||.+.+.-+++++.........+|+|+-++- ...-.+
T Consensus 4 ~Ln~~Q~~av~~~----------------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~ 67 (726)
T TIGR01073 4 HLNPEQREAVKTT----------------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKE 67 (726)
T ss_pred ccCHHHHHHHhCC----------------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHH
Confidence 4889999998632 24577788999999999999999888654333456888877543 233444
Q ss_pred HHHHHC
Q 001149 461 EFMKWR 466 (1138)
Q Consensus 461 E~~kw~ 466 (1138)
.+.+.+
T Consensus 68 Rl~~~~ 73 (726)
T TIGR01073 68 RVEKLL 73 (726)
T ss_pred HHHHHh
Confidence 444433
No 407
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.37 E-value=65 Score=37.20 Aligned_cols=53 Identities=9% Similarity=0.081 Sum_probs=34.2
Q ss_pred HHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHh
Q 001149 523 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 582 (1138)
Q Consensus 523 ~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll 582 (1138)
.-+...+...+|++|++|.+- -...-++..+.+-| .-=+|....++...+.-+
T Consensus 208 dll~aalR~rPd~IivgEvrg-----~e~~~~~~a~~tGh--~~isT~ha~s~~~~~~rl 260 (312)
T COG0630 208 DLLRAALRQRPDYIIVGELRG-----REAFVLFQAMQTGH--GTISTIHADSPELVLDRL 260 (312)
T ss_pred HHHHHHHhcCCCeEEEeeeec-----HHHHHHHHHHhcCC--CceeEEecCCHHHHHHHH
Confidence 344566777999999999873 23455666666666 333566666666655433
No 408
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=56.33 E-value=49 Score=39.88 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=26.0
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhc-ccCeEEEEecCCCCC
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQN 573 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l-~~~~RllLTGTPlqN 573 (1138)
-+|+|.+||++-+ |. .....+..+ +.+.|++--+--+||
T Consensus 295 ~yD~ilIDE~QDF--P~-~F~~Lcf~~tkd~KrlvyAyDelQn 334 (660)
T COG3972 295 AYDYILIDESQDF--PQ-SFIDLCFMVTKDKKRLVYAYDELQN 334 (660)
T ss_pred cccEEEecccccC--CH-HHHHHHHHHhcCcceEEEehHhhhc
Confidence 7899999999987 33 344444444 556777776655544
No 409
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=56.23 E-value=1.7e+02 Score=33.96 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=23.0
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
..|.-..|.|||.++..++..+... .++++++.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~----g~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQ----GKKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc----CCeEEEEe
Confidence 3455799999999888877665432 24667665
No 410
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=56.06 E-value=1e+02 Score=33.70 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe----CcchHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT----PVNVLHNWKQ 460 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~----P~sll~qW~~ 460 (1138)
+|.=.+|+-..|.|||.-++.++....... ..+++++. |..++..+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s~E~~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSLEMSKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEeCCCCHHHHHHHHHH
Confidence 345578899999999999999888776542 24788888 3445555543
No 411
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.65 E-value=1.9e+02 Score=37.59 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=22.1
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
..|.-..|.|||.++.-+...+... .+.+.+.+|.-
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~ 223 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTT 223 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecC
Confidence 4567999999998766665544222 12235555553
No 412
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.27 E-value=73 Score=40.17 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=20.9
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
...|+.-..|+|||..+.+|+..+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3358899999999999999887764
No 413
>PRK08760 replicative DNA helicase; Provisional
Probab=54.94 E-value=1.4e+02 Score=36.56 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
+|.=.|||...|.|||.-++.++....... ..+++++..---..+|...+...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~---g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS---KKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc---CCceEEEeccCCHHHHHHHHHHh
Confidence 345578899999999999998887654321 24889998877777888776544
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.83 E-value=2.1e+02 Score=35.21 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhc-----ccCeEEEEecCCCCCChhHHHHHhhhhccC-----------CCCChHH
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQV-----KCQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLGSSHE 595 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l-----~~~~RllLTGTPlqNnl~El~~ll~fL~p~-----------~lg~~~e 595 (1138)
+++++++|.+=+..+.. .....+..+ .....++|.+|.-++.+.+....++.+... .+|..-.
T Consensus 334 d~d~VLIDTaGr~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~ 412 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLGGALD 412 (484)
T ss_pred CCCeEEeCCCCcChhhH-HHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccCCCCEEEEeCCCCcccchHHHH
Confidence 56778888864432221 222333322 223567888887776666655544443322 2333344
Q ss_pred HHhhccCCccc
Q 001149 596 FRNRFQNPIEN 606 (1138)
Q Consensus 596 F~~~f~~pi~~ 606 (1138)
+...+..|+..
T Consensus 413 i~~~~~lPI~y 423 (484)
T PRK06995 413 VVIRYKLPLHY 423 (484)
T ss_pred HHHHHCCCeEE
Confidence 55555666544
No 415
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=54.79 E-value=3.3 Score=31.93 Aligned_cols=41 Identities=22% Similarity=0.600 Sum_probs=28.1
Q ss_pred ccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 196 CVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 196 C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
|.+|.+.- +.+.-..|...||..|+...+.. +...|+.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---------~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---------GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---------CcCCCCCCCC
Confidence 66776654 45555569999999998754322 4567999863
No 416
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=54.68 E-value=1.1e+02 Score=34.06 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=31.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
.+.-.++.-.+|.|||+-++-|+....+.+ .|+|.|.-
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g----e~vlyvs~ 59 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREG----EPVLYVST 59 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcC----CcEEEEEe
Confidence 456677889999999999999999887763 47888884
No 417
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.51 E-value=3e+02 Score=33.25 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=24.1
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
..++--.|.|||-++.-++..+... .+++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~----G~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRK----GFKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----CCCEEEEcC
Confidence 4567889999999888877765433 246666664
No 418
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=54.41 E-value=41 Score=38.40 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.8
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
--+|....|.|||..|.++...+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 478888999999999999998887544
No 419
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=54.03 E-value=9.3 Score=35.17 Aligned_cols=51 Identities=14% Similarity=0.299 Sum_probs=34.9
Q ss_pred CCcccccccCCC-CceeecCC--ccccccccccccCCCcccccccccCCCceeecCC
Q 001149 191 CSECYCVWCGRS-SDLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 191 ~~~~~C~~C~~g-g~l~~Cd~--C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
+....|.+|... |-.+-|.. |.+.||..|-...-..-. ......|...+|.
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~---~~~~~~~~~~~C~ 87 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIE---FDEDNGKFRIFCP 87 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEE---EccCCCceEEECh
Confidence 344579999998 99999977 999999999654322111 1123457776663
No 420
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=53.95 E-value=2.9 Score=31.01 Aligned_cols=29 Identities=21% Similarity=0.613 Sum_probs=21.5
Q ss_pred ccccCCCCceeecCCccccccccccccCC
Q 001149 196 CVWCGRSSDLVSCKSCKTLFCTTCVKRNI 224 (1138)
Q Consensus 196 C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~ 224 (1138)
|.+|.+......--.|...||..|+...+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~ 29 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWL 29 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHH
Confidence 67787775555555699999999987543
No 421
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=53.77 E-value=3 Score=36.87 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=19.9
Q ss_pred cccccCC----CCc--eeecC--CccccccccccccCCCcccccc-cccCCCceeecCCcc
Q 001149 195 YCVWCGR----SSD--LVSCK--SCKTLFCTTCVKRNISEACLSD-EVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~----gg~--l~~Cd--~C~~~f~~~C~~~~~~~~~~~~-~~~~~~W~C~~C~~~ 246 (1138)
.|.+|-. +++ .+.|+ .|...||..||...+-...-.+ ....-.+.||.|...
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 5666653 333 47898 4999999999985542211111 111234789999753
No 422
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=53.74 E-value=1.2e+02 Score=34.90 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
.-...-++.-+.|.||+..|.+|+..++..
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 345788889999999999999999888654
No 423
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=53.15 E-value=28 Score=37.76 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=26.4
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCC
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 574 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNn 574 (1138)
.++++|+||++.+-.. .+ ..+..+.....++|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~g--~l-~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG--YL-LLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChH--HH-HHHHhhccCcceEEEECchhcc
Confidence 4789999999987321 12 2244444445688889998854
No 424
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=53.06 E-value=66 Score=39.16 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=22.6
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
+...|+.-+.|.|||..|.+++..++.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 455788999999999999999888754
No 425
>COG0254 RpmE Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]
Probab=52.76 E-value=7.8 Score=34.61 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCceeeccCCCccc--ccccccccccccCcccHhhHhhcCcccCCCC
Q 001149 146 LSEKFYCTACNNVAI--EVHPHPILNVIVCKDCKCLLEKKMHVKDADC 191 (1138)
Q Consensus 146 ~~~~~~C~~C~~~~~--~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~ 191 (1138)
..-.+.|.+||.... ....++.+.+-+|..|..||.-..-..|..|
T Consensus 11 ~~v~~~~~s~g~~f~~~ST~~~~~i~vdV~s~~HPFyTG~qk~~d~~G 58 (75)
T COG0254 11 RPVVFVCSSCGNEFTTRSTKGTDEINLDVCSKCHPFYTGKQKIVDTEG 58 (75)
T ss_pred ceEEEEeCCCCCEEEEEeccCCceEEEEeCCCCCCcCcCceeEeeccc
Confidence 456799999997733 3445679999999999999986655555544
No 426
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=52.61 E-value=4.4 Score=49.58 Aligned_cols=48 Identities=29% Similarity=0.737 Sum_probs=34.7
Q ss_pred cccccCCCC-----ceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 195 YCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 195 ~C~~C~~gg-----~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
-|.+|+.+| .++.|..|...||..|+....-...+ ...|.|+-|..--
T Consensus 20 mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l-----~~gWrC~~crvCe 72 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVL-----SGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHh-----cCCcccCCceeee
Confidence 477776655 58999999999999998754333322 3559999996543
No 427
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.36 E-value=3.9 Score=45.38 Aligned_cols=42 Identities=26% Similarity=0.588 Sum_probs=34.1
Q ss_pred ccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 194 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
--|.+|-+..+--.|--|...||-.||.-..+... + ||+|.-
T Consensus 240 ~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-------e---CPlCR~ 281 (293)
T KOG0317|consen 240 RKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-------E---CPLCRE 281 (293)
T ss_pred CceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-------C---CCcccc
Confidence 36999999999999999999999999876554431 1 999963
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.32 E-value=2.1e+02 Score=34.47 Aligned_cols=75 Identities=13% Similarity=0.277 Sum_probs=45.2
Q ss_pred cCCCEEEEcCCcccCCcccHHHHHHHhc--------ccCeEEEEecCCCCCChhHHHHHhhhhccC-----------CCC
Q 001149 531 DGPDILVCDEAHMIKNTRADTTQALKQV--------KCQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLG 591 (1138)
Q Consensus 531 ~~~dlVIlDEaH~iKN~~S~~skal~~l--------~~~~RllLTGTPlqNnl~El~~ll~fL~p~-----------~lg 591 (1138)
.++|+||+|=+-+.-+.. .....+..+ .....++|+||==++.+.+....+..+.+. .+|
T Consensus 298 ~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G 376 (432)
T PRK12724 298 DGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376 (432)
T ss_pred CCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCcc
Confidence 478999999766542222 222233222 224568889988777777777766665544 234
Q ss_pred ChHHHHhhccCCccc
Q 001149 592 SSHEFRNRFQNPIEN 606 (1138)
Q Consensus 592 ~~~eF~~~f~~pi~~ 606 (1138)
..-.....+..|+..
T Consensus 377 ~il~i~~~~~lPI~y 391 (432)
T PRK12724 377 SFLELADTYSKSFTY 391 (432)
T ss_pred HHHHHHHHHCCCEEE
Confidence 445566667777654
No 429
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=52.32 E-value=52 Score=38.09 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=19.9
Q ss_pred CccHHHHHHHHHHHHHHhcccCCCceEEEe--Ccc
Q 001149 421 GLGKTFQVIAFLYTAMRSVNLGLRTALIVT--PVN 453 (1138)
Q Consensus 421 GLGKTlqaIa~i~~l~~~~~~~~k~vLIV~--P~s 453 (1138)
|.|||-+|.|+...+...+ +++|+|. |++
T Consensus 12 GVGKTT~aaA~A~~lA~~g----~kvLlvStDPAh 42 (322)
T COG0003 12 GVGKTTIAAATAVKLAESG----KKVLLVSTDPAH 42 (322)
T ss_pred cccHHHHHHHHHHHHHHcC----CcEEEEEeCCCC
Confidence 7899999999877766554 2355553 554
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=51.70 E-value=44 Score=43.37 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=20.3
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
..+.|.+|.-..|.|||..+-++...
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHH
Confidence 35678999999999999877665443
No 431
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=51.41 E-value=40 Score=43.20 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=69.1
Q ss_pred ccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHH
Q 001149 770 YKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVE 849 (1138)
Q Consensus 770 ~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~ 849 (1138)
...+..|||.++.++++......|..+||-..-......+...|+.. .|.++..++.+.+..+|...-.
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~r-----------Fg~~v~vlHS~Ls~~er~~~W~ 290 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKAR-----------FGAKVAVLHSGLSPGERYRVWR 290 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHH-----------hCCChhhhcccCChHHHHHHHH
Confidence 34567899999999999999999999999999998888887777763 5788999999999999999888
Q ss_pred HHcCCCCCCceEEEeecc
Q 001149 850 RFNEPLNKRVKCTLISTR 867 (1138)
Q Consensus 850 ~Fn~~~n~~v~v~LiSTk 867 (1138)
+... +.++|+ |.|+
T Consensus 291 ~~~~---G~~~vV-IGtR 304 (730)
T COG1198 291 RARR---GEARVV-IGTR 304 (730)
T ss_pred HHhc---CCceEE-EEec
Confidence 8885 566654 4444
No 432
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=51.21 E-value=69 Score=42.55 Aligned_cols=100 Identities=8% Similarity=-0.024 Sum_probs=71.0
Q ss_pred CCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 774 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 774 ~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
..|||-.+.+..+-.....|.+++|.+..+..+..+...+..... ..++....++|.++..++.++++.+.+
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~--------~~~i~v~~Lsg~~~~~e~~~~~~~l~~ 552 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFA--------NFPVTIELLSRFRSAKEQNEILKELAS 552 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhc--------cCCcEEEEEeccccHHHHHHHHHHHHc
Confidence 468898776655444445688999999999888887777765321 136778899999999999999999885
Q ss_pred CCCCCceEEEeeccccccCCCcccCCEEEEE
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSANRVIIV 884 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~ 884 (1138)
+.+.|++.+.......+.+.....||+=
T Consensus 553 ---g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 553 ---GKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred ---CCceEEEchHHHhhCCCCcccCCEEEee
Confidence 3455555555555556677777666663
No 433
>PRK10867 signal recognition particle protein; Provisional
Probab=50.88 E-value=1.3e+02 Score=36.39 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=25.9
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
.-.++.-..|.|||.++.-++..+.... .+++++|.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~---G~kV~lV~ 136 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKK---KKKVLLVA 136 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhc---CCcEEEEE
Confidence 3456789999999999988887765441 24566666
No 434
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.60 E-value=4.1e+02 Score=29.93 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=24.4
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
-.++.-..|.|||-++.-++..+... .+++++|.-
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~----g~~V~li~~ 108 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQ----GKSVLLAAG 108 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc----CCEEEEEeC
Confidence 34456899999999888887666432 246777663
No 435
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=50.34 E-value=71 Score=43.99 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=64.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH-HHHHHCCCCCCCeEEEEecCcchhHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ-EFMKWRPSELKPLRVFMLEDVSRDRRAE 488 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~-E~~kw~p~~~~~l~V~~~~~~~~~~r~~ 488 (1138)
.+.+.++...-|+|||.+.+.-+..++..+ .....+|||+=+....++.. .+.+-+... +. .... ...
T Consensus 13 ~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~---~~-----~~p~--~~~ 81 (1232)
T TIGR02785 13 RGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQKA---LQ-----QEPN--SKH 81 (1232)
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHHHH---Hh-----cCch--hHH
Confidence 467889999999999999998887766544 33457899997776665432 233222110 00 0000 111
Q ss_pred HHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcc
Q 001149 489 LLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHM 543 (1138)
Q Consensus 489 ~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~ 543 (1138)
+......-....|.|.+.|-.- +.+.....+...|..=|.||+-.
T Consensus 82 L~~q~~~~~~~~i~Tihsf~~~----------~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 82 LRRQLALLNTANISTLHSFCLK----------VIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHhhccCCeEeeHHHHHHH----------HHHHhhhhcCCCCCceeCCHHHH
Confidence 1122223345778888887531 22333334444666667887653
No 436
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=50.27 E-value=89 Score=37.00 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=18.1
Q ss_pred CCCcCeEEEcCCCccHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAF 431 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~ 431 (1138)
..-...||.-..|.|||-.|-.+
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHH
Confidence 45678999999999999655443
No 437
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.22 E-value=8.3 Score=42.58 Aligned_cols=61 Identities=28% Similarity=0.490 Sum_probs=36.3
Q ss_pred ccccccCCCCceeecCC--ccccccccccccCCCcccccccccCCCceeecCCcc--hH------hHHHHHHHhhhcccc
Q 001149 194 CYCVWCGRSSDLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS--LL------KRLTSELGRAMGSEN 263 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~--C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~--~~------~~l~~~~~~~~~~~~ 263 (1138)
.-|..|+.--.-- |.. |...||..||. ..-+ +....|+.|.-. .| ++.-.+.|++|.-.+
T Consensus 275 LkCplc~~Llrnp-~kT~cC~~~fc~eci~----~al~-----dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~ 344 (427)
T COG5222 275 LKCPLCHCLLRNP-MKTPCCGHTFCDECIG----TALL-----DSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQR 344 (427)
T ss_pred ccCcchhhhhhCc-ccCccccchHHHHHHh----hhhh-----hccccCCCcccccchhhccCccHHHHHHHHHHHHHHH
Confidence 3488887432222 222 77899999963 3322 356899999753 33 344456667776433
Q ss_pred c
Q 001149 264 L 264 (1138)
Q Consensus 264 ~ 264 (1138)
.
T Consensus 345 ~ 345 (427)
T COG5222 345 K 345 (427)
T ss_pred H
Confidence 3
No 438
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=50.14 E-value=1e+02 Score=39.07 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=25.5
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
-.++.-+=|-|||..+..++..+.... ...++|.+|.
T Consensus 189 ~tV~taPRqrGKS~iVgi~l~~La~f~---Gi~IlvTAH~ 225 (752)
T PHA03333 189 YTAATVPRRCGKTTIMAIILAAMISFL---EIDIVVQAQR 225 (752)
T ss_pred ceEEEeccCCCcHHHHHHHHHHHHHhc---CCeEEEECCC
Confidence 345556789999998877766654321 2578999994
No 439
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=49.61 E-value=1.5e+02 Score=37.08 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.+...|+.-+.|.|||..|-+++..+..
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 3445789999999999999998887754
No 440
>PRK06904 replicative DNA helicase; Validated
Probab=49.17 E-value=2.1e+02 Score=35.17 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=37.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 464 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~k 464 (1138)
+|.=.|||.-.|.|||.-++.++...... ...+++++..---..++...+-.
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlEMs~~ql~~Rlla 271 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLEMPAEQIMMRMLA 271 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEeccCCHHHHHHHHHH
Confidence 44557899999999999887777655322 13589999887667777666543
No 441
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=49.16 E-value=1e+02 Score=36.88 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=28.6
Q ss_pred CCCEEEEcCCcccCCcc---cHHHHHHHhc-ccCeEEEEec--CCCC
Q 001149 532 GPDILVCDEAHMIKNTR---ADTTQALKQV-KCQRRIALTG--SPLQ 572 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~---S~~skal~~l-~~~~RllLTG--TPlq 572 (1138)
..|++++|-.|.+.+.. -..+-.+..+ .....|+||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 57899999999987763 3344445555 3444899999 7744
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=49.02 E-value=1.1e+02 Score=37.63 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
.|.-.++.-+.|.|||.-++-|++...+.+ .++|+|.---...|-...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g----e~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK----ERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEEeeCCHHHHHHHHHHc
Confidence 345578899999999999999988876543 3778888666666666665544
No 443
>PHA00012 I assembly protein
Probab=48.71 E-value=40 Score=38.92 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=18.9
Q ss_pred EEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 415 ILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 415 ILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
++.--.|.|||+.|++-|...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 3455689999999999777766553
No 444
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=48.65 E-value=9.9 Score=40.00 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCC
Q 001149 532 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSP 570 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTP 570 (1138)
.+|++|||||=.|- ......-+....|+++|.|=
T Consensus 90 ~~DlliVDEAAaIp-----~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAIP-----LPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS------HHHHHHHHCCSSEEEEEEEB
T ss_pred CCCEEEEechhcCC-----HHHHHHHHhhCCEEEEEeec
Confidence 57999999997762 22222334678899998884
No 445
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=48.65 E-value=9.6 Score=37.31 Aligned_cols=43 Identities=26% Similarity=0.703 Sum_probs=29.1
Q ss_pred ccccccCCC-----CceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 194 CYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~~g-----g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
..|..|+.. +.-..|..|.+.+|..|-.. ......|.|.+|.-
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQK 102 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHH
T ss_pred cchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHH
Confidence 367777642 23367889999999999322 23456899999954
No 446
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.25 E-value=6.9 Score=44.42 Aligned_cols=41 Identities=22% Similarity=0.546 Sum_probs=26.8
Q ss_pred cccccCCC----Cc--eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRS----SD--LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~g----g~--l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
-|.+|... -+ |+.= .|...||..|+.+.+..+ +=.|+.|.-
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~---------~~~CP~C~~ 51 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRG---------SGSCPECDT 51 (309)
T ss_pred CCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCC---------CCCCCCCCC
Confidence 46666652 22 2222 699999999998876433 226999953
No 447
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=47.69 E-value=49 Score=34.86 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=32.2
Q ss_pred ccCCCEEEEcCCcccCCcc----cHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhh
Q 001149 530 QDGPDILVCDEAHMIKNTR----ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 585 (1138)
Q Consensus 530 ~~~~dlVIlDEaH~iKN~~----S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL 585 (1138)
...||+||+||.=..-+.. ..+...+..-...--++|||-= -+.+|..+.+++
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~---~p~~Lie~AD~V 169 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPE---MPESLLAIADQI 169 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCCee
Confidence 4589999999976543322 3344444444445579999974 445555444443
No 448
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.43 E-value=4.8 Score=42.68 Aligned_cols=74 Identities=27% Similarity=0.537 Sum_probs=42.1
Q ss_pred ccccCcccHhhHhhc-------CcccCCCCCcccccccCCCCceeecC--CccccccccccccCCCcccccccccCCCce
Q 001149 169 NVIVCKDCKCLLEKK-------MHVKDADCSECYCVWCGRSSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQ 239 (1138)
Q Consensus 169 ~~~~C~~C~~~~~~~-------~~~~d~d~~~~~C~~C~~gg~l~~Cd--~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~ 239 (1138)
+|-+|-.|----+.+ .+..|.| |..-|+.|+..=.---|- .|-..||-+|++- -...++....-...+
T Consensus 20 RVNVCEhClV~nHpkCiVQSYLqWL~DsD-Y~pNC~LC~t~La~gdt~RLvCyhlfHW~Clne--raA~lPanTAPaGyq 96 (299)
T KOG3970|consen 20 RVNVCEHCLVANHPKCIVQSYLQWLQDSD-YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNE--RAANLPANTAPAGYQ 96 (299)
T ss_pred hhhHHHHHHhccCchhhHHHHHHHHhhcC-CCCCCceeCCccccCcceeehhhhhHHHHHhhH--HHhhCCCcCCCCccc
Confidence 456676664322222 2344555 455899997432211222 2889999999862 122333334446799
Q ss_pred eecCCc
Q 001149 240 CCCCSP 245 (1138)
Q Consensus 240 C~~C~~ 245 (1138)
|++|.-
T Consensus 97 CP~Cs~ 102 (299)
T KOG3970|consen 97 CPCCSQ 102 (299)
T ss_pred CCCCCC
Confidence 999964
No 449
>PHA02542 41 41 helicase; Provisional
Probab=46.97 E-value=2e+02 Score=35.21 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=31.2
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
.=.|+|..+|.|||.-++.++...... .+++|++.----..++..
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~----g~~Vl~fSLEM~~~ql~~ 235 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQ----GYNVLYISMEMAEEVIAK 235 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEEeccCCHHHHHH
Confidence 347899999999999999988776532 357888864333334433
No 450
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=46.58 E-value=1.2e+02 Score=37.50 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=34.9
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
+.-.++.-+.|.|||.-+..|+......+ .++++|.-.....+-.+.+..+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g----~~~~yis~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRG----ERCLLFAFEESRAQLIRNARSW 323 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCC----CcEEEEEecCCHHHHHHHHHHc
Confidence 33456789999999999999988776543 4778887555454444444443
No 451
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.37 E-value=1.4e+02 Score=35.99 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=25.5
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
.-.+++-..|.|||.++.-++..+.... .+++++|.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~---g~kV~lV~ 135 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQ---GKKVLLVA 135 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhC---CCeEEEEe
Confidence 4577889999999999888887754221 23556655
No 452
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=46.27 E-value=18 Score=38.22 Aligned_cols=66 Identities=17% Similarity=0.400 Sum_probs=42.8
Q ss_pred CCceeeccCCCcc-------cccccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCccccccccc
Q 001149 147 SEKFYCTACNNVA-------IEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTC 219 (1138)
Q Consensus 147 ~~~~~C~~C~~~~-------~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C 219 (1138)
+..|.|-.||+.. ..++.|--++-.+|.-|-+-|++..-.+--- -=..|-..+-|..|.++|-+.|
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~-------rthtgvrpykc~~c~kaftqrc 187 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHT-------RTHTGVRPYKCSLCEKAFTQRC 187 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhh-------ccccCccccchhhhhHHHHhhc
Confidence 5679999999873 2466777777778888877666553221110 0113445567777888888888
No 453
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=46.27 E-value=29 Score=42.79 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=21.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
....|.+|.-..|.|||..+=+++..
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999988777543
No 454
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=46.24 E-value=54 Score=35.92 Aligned_cols=19 Identities=26% Similarity=0.090 Sum_probs=14.2
Q ss_pred CcCeEEEcCCCccHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVI 429 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaI 429 (1138)
-...||.-..|+|||--|-
T Consensus 50 l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp --EEEEESSTTSSHHHHHH
T ss_pred cceEEEECCCccchhHHHH
Confidence 3578999999999995443
No 455
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=45.93 E-value=1.4e+02 Score=33.19 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=24.4
Q ss_pred CccHHHHHHHHHHHHHHhcccCCCceEEE--eCcchHH
Q 001149 421 GLGKTFQVIAFLYTAMRSVNLGLRTALIV--TPVNVLH 456 (1138)
Q Consensus 421 GLGKTlqaIa~i~~l~~~~~~~~k~vLIV--~P~sll~ 456 (1138)
|.|||-.+.++...+.+.+ +++|+| +|.+++.
T Consensus 12 GvG~TTltAnLA~aL~~~G----~~VlaID~dpqN~Lr 45 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLG----ESVLAIDLDPQNLLR 45 (243)
T ss_pred CCCHHHHHHHHHHHHHHCC----CcEEEEeCCcHHHHH
Confidence 7899999999888876653 467776 4877764
No 456
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.58 E-value=1.9e+02 Score=36.67 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
-....|+.-.-|.|||..|..|...+..
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456789999999999999998877654
No 457
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=45.55 E-value=4.6 Score=31.85 Aligned_cols=28 Identities=32% Similarity=0.812 Sum_probs=17.1
Q ss_pred CccccccccccccCCCcccccccccCCCceeecC
Q 001149 210 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 210 ~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
.|..+||..||.+..... ....+.|+.|
T Consensus 15 ~CGH~FC~~Cl~~~~~~~------~~~~~~CP~C 42 (42)
T PF15227_consen 15 PCGHSFCRSCLERLWKEP------SGSGFSCPEC 42 (42)
T ss_dssp SSSSEEEHHHHHHHHCCS------SSST---SSS
T ss_pred CCcCHHHHHHHHHHHHcc------CCcCCCCcCC
Confidence 389999999997664433 1223889887
No 458
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=45.02 E-value=29 Score=45.23 Aligned_cols=115 Identities=16% Similarity=0.268 Sum_probs=70.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHH----HHHHHHHHHCCCCCCCeEEEEecCcchh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLH----NWKQEFMKWRPSELKPLRVFMLEDVSRD 484 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~----qW~~E~~kw~p~~~~~l~V~~~~~~~~~ 484 (1138)
...+.++.+.+|.|||+.+-..+...+... +.+++.+|+|.. ++. .|..-+. .+ .+++....+....
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~--~~----g~k~ie~tgd~~p 1013 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDE--LP----GIKVIELTGDVTP 1013 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcc--cC----CceeEeccCccCC
Confidence 346788899999999988765555444433 357899999954 443 4765543 22 2667766654332
Q ss_pred HHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCc
Q 001149 485 RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNT 547 (1138)
Q Consensus 485 ~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~ 547 (1138)
.-.. ....+++|||.+..-..+. ....++ ......++|+||.|-+...
T Consensus 1014 d~~~-----v~~~~~~ittpek~dgi~R--sw~~r~--------~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1014 DVKA-----VREADIVITTPEKWDGISR--SWQTRK--------YVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred Chhh-----eecCceEEcccccccCccc--cccchh--------hhccccceeecccccccCC
Confidence 2111 2456899999987643321 111111 1125677999999988654
No 459
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.89 E-value=1.3e+02 Score=38.25 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
.....|+.-+.|.|||..|..+...+.
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345578999999999997777776664
No 460
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=44.63 E-value=1.4e+02 Score=34.04 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=23.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHh
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 438 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~ 438 (1138)
-....++..+-|.||+..|.+|+..++..
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~ 46 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKE 46 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCC
Confidence 34567788999999999999999888654
No 461
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=44.28 E-value=1.6e+02 Score=36.43 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=36.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
.|.-.+|+-+.|.|||.-++-|++..+... ..++|+|.=-....+-.+.+..+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~---ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRF---DEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCEEEEEccCCHHHHHHHHHHc
Confidence 455678899999999999999987766541 24788887544444444444443
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=43.80 E-value=3.8e+02 Score=29.26 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=32.7
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHh--------cccCCCceEEEe---CcchHHHHHHHHHH
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRS--------VNLGLRTALIVT---PVNVLHNWKQEFMK 464 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~--------~~~~~k~vLIV~---P~sll~qW~~E~~k 464 (1138)
=++|+-.-|.|||.-++.+++..... ......++|++. |...+.+-...+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 47899999999999999887765321 111235677777 44444444444433
No 463
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.77 E-value=14 Score=30.96 Aligned_cols=29 Identities=28% Similarity=0.833 Sum_probs=24.5
Q ss_pred cccccCC----CCceeecCCccccccccccccC
Q 001149 195 YCVWCGR----SSDLVSCKSCKTLFCTTCVKRN 223 (1138)
Q Consensus 195 ~C~~C~~----gg~l~~Cd~C~~~f~~~C~~~~ 223 (1138)
-|.+|++ +++++.|..|...||-.|-.+.
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 5888874 8899999999999999996544
No 464
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.31 E-value=5.2 Score=41.39 Aligned_cols=30 Identities=23% Similarity=0.771 Sum_probs=21.8
Q ss_pred ecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 207 SCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 207 ~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.--+|..+||..||+..+... =.|+.|..+
T Consensus 147 vsTkCGHvFC~~Cik~alk~~----------~~CP~C~kk 176 (187)
T KOG0320|consen 147 VSTKCGHVFCSQCIKDALKNT----------NKCPTCRKK 176 (187)
T ss_pred cccccchhHHHHHHHHHHHhC----------CCCCCcccc
Confidence 445699999999987665332 459999753
No 465
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.03 E-value=25 Score=41.14 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=33.1
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEFMKW 465 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~~E~~kw 465 (1138)
.|.+++-..|.|||+.|=|+... ++++.+=|. ..|...|.-|=+|.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE--------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE--------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh--------hcCeEEEechhhhhhhhccchHHH
Confidence 68899999999999988876643 345555554 55667887776553
No 466
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=42.77 E-value=9.1 Score=44.65 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=11.2
Q ss_pred CcccHhhHhhcCcccCCCCCc
Q 001149 173 CKDCKCLLEKKMHVKDADCSE 193 (1138)
Q Consensus 173 C~~C~~~~~~~~~~~d~d~~~ 193 (1138)
|-.|+.-+..-.|..|.+++-
T Consensus 363 Cv~C~r~ldgipFtvd~~n~v 383 (468)
T KOG1701|consen 363 CVVCARCLDGIPFTVDSQNNV 383 (468)
T ss_pred EEEeccccCCccccccCCCce
Confidence 444444444446777766553
No 467
>PRK10689 transcription-repair coupling factor; Provisional
Probab=42.66 E-value=1.2e+02 Score=41.48 Aligned_cols=99 Identities=7% Similarity=-0.032 Sum_probs=66.4
Q ss_pred CCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 774 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 774 ~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
..+||-.+.+..+-.....|.+++|-+..+..+..+...+..... ..++.+..+.|.++.+++..++....+
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~--------~~~v~i~~l~g~~s~~e~~~il~~l~~ 701 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFA--------NWPVRIEMLSRFRSAKEQTQILAEAAE 701 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhc--------cCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 468898766554444445688999999999887777766664210 125777889999999999999888874
Q ss_pred CCCCCceEEEeeccccccCCCcccCCEEEE
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSANRVII 883 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~An~VIi 883 (1138)
+.+.|++.+.......+++.....||+
T Consensus 702 ---g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 702 ---GKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ---CCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 345555555554444555555555444
No 468
>PRK09165 replicative DNA helicase; Provisional
Probab=42.13 E-value=3e+02 Score=34.01 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=35.7
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcc-----------cCCCceEEEeCcchHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVN-----------LGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~-----------~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
|.=.|||.-.|.|||.-++.++........ ....++|++..---..++...+.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~l 280 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRIL 280 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHH
Confidence 344789999999999999888766543311 01357888876555566555543
No 469
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=41.96 E-value=15 Score=28.02 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=19.3
Q ss_pred eeeccCCCcccccccccccccccCcccHh
Q 001149 150 FYCTACNNVAIEVHPHPILNVIVCKDCKC 178 (1138)
Q Consensus 150 ~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~ 178 (1138)
..|..||+.++.. +-|-...++|..|-.
T Consensus 2 r~C~~Cg~~Yh~~-~~pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIE-FNPPKVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETT-TB--SSTTBCTTTTE
T ss_pred cCcCCCCCccccc-cCCCCCCCccCCCCC
Confidence 6799999986655 667666777877754
No 470
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=41.83 E-value=5.7 Score=50.00 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=45.3
Q ss_pred CCCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 188 DADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 188 d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
-++.++..|+.|.+++.++.|+.|.|.++.+|++. .+.. ....+.|.|.-|+-.
T Consensus 501 ~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~-~P~K----te~i~~~~~~~~Q~~ 554 (696)
T KOG0383|consen 501 LEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKP-MPLK----TELIGRVELSPCQKK 554 (696)
T ss_pred hhhcchhhHHHHHHhhccccCchhhhhhhhhhccC-CCcc----ceeEEEEecCHHHHH
Confidence 46788889999999999999999999999999887 4544 345678999998653
No 471
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=41.71 E-value=8.5 Score=34.29 Aligned_cols=26 Identities=19% Similarity=0.602 Sum_probs=18.6
Q ss_pred CCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 209 KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 209 d~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
..|...||..||...+... ..||+|.
T Consensus 48 ~~C~H~FH~~Ci~~Wl~~~----------~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWLKQN----------NTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHHTTS----------SB-TTSS
T ss_pred cccCCCEEHHHHHHHHhcC----------CcCCCCC
Confidence 4599999999997665332 3799994
No 472
>PRK08840 replicative DNA helicase; Provisional
Probab=41.64 E-value=3.2e+02 Score=33.45 Aligned_cols=51 Identities=16% Similarity=0.050 Sum_probs=35.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
+|.=.|||.-.|.|||.-++-++...... ..+++++...---..++...+-
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~---~~~~v~~fSlEMs~~ql~~Rll 266 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMD---QDKPVLIFSLEMPAEQLMMRML 266 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHh---CCCeEEEEeccCCHHHHHHHHH
Confidence 44557899999999999887776655322 1358888877655666665543
No 473
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=41.53 E-value=1.9e+02 Score=32.48 Aligned_cols=41 Identities=22% Similarity=0.158 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
+-+.|.+.+.++.. ...+..+++-.+|.|||-..-+++..+
T Consensus 64 ~~~~~~~~l~~~~~------------~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLE------------KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHh------------cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 56778887776643 223447889999999998888877665
No 474
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.50 E-value=10 Score=47.37 Aligned_cols=90 Identities=16% Similarity=0.348 Sum_probs=60.6
Q ss_pred eeeccCCCcccccccccccccccCcccHhhHhhcCcccC---CCCCcccccccCCCCceeecC---------------Cc
Q 001149 150 FYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKD---ADCSECYCVWCGRSSDLVSCK---------------SC 211 (1138)
Q Consensus 150 ~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d---~d~~~~~C~~C~~gg~l~~Cd---------------~C 211 (1138)
-+|..|++.. --++...-|..| -.|..-++.++ .-....+|..|-++-.+..|. +|
T Consensus 100 ~~C~~C~~~~-----~~~~~~~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd 173 (669)
T KOG2231|consen 100 HSCHICDRRF-----RALYNKKECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGD 173 (669)
T ss_pred hhcCccccch-----hhhcccCCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCC
Confidence 5677777642 233445556677 44444433332 233445899998888777662 24
Q ss_pred c-------ccccccccccCCCcccccccccCCCceeecCCc
Q 001149 212 K-------TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 212 ~-------~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
| .--|..|..+.++...+-+-..-+.|.|-+|+-
T Consensus 174 ~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~ 214 (669)
T KOG2231|consen 174 PDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDY 214 (669)
T ss_pred CccccccCCccchhhhhhhccHHHHHHhhccceeheeecCc
Confidence 3 356888999999999998888889999999963
No 475
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.26 E-value=29 Score=39.16 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=35.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
-+|.+|.-..|.||+.-|-|++... ..++.-|...-|+..|.-|-++.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA-------nSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA-------NSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc-------CCceEEeehHHHHHHHhccHHHH
Confidence 3688889999999999887766442 24666666777888887776553
No 476
>PTZ00396 Casein kinase II subunit beta; Provisional
Probab=40.93 E-value=13 Score=41.11 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=25.7
Q ss_pred CccccccccccccCCCcccccccccCCCceeecCC
Q 001149 210 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 210 ~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.|||++|..|--.++|...... ...-.++|+.|.
T Consensus 122 ~CPRv~C~~q~~LPvGlSd~~g-~~~VKlyCP~C~ 155 (251)
T PTZ00396 122 HCPRVLCEGQNVLPIGLSDVLK-TSRVKVYCPRCQ 155 (251)
T ss_pred CCCCccCCCCcccccccCCCcC-cCceeEeCCCch
Confidence 3999999999888888664442 244568999994
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=40.74 E-value=72 Score=34.05 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=17.5
Q ss_pred eEEEcCCCccHHHHHHHHHHHH
Q 001149 414 CILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l 435 (1138)
.+++-.+|.|||..+-+++..+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999998877766554
No 478
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=40.58 E-value=9 Score=29.45 Aligned_cols=38 Identities=26% Similarity=0.692 Sum_probs=23.4
Q ss_pred ccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecC
Q 001149 196 CVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 196 C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
|.+|.+-- +.+....|..+||..|+...+. . ...|++|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~---------~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLE---------K-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHH---------C-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHH---------C-cCCCcCC
Confidence 45565433 3335678999999999765422 2 3678877
No 479
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=13 Score=42.85 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=30.0
Q ss_pred ccccccCC---CCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 194 CYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~~---gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+-|.+|-+ -|+.+.==-|...||..||++.+.+- .=.|++|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---------r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---------RTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---------CccCCCCCC
Confidence 58999974 35544435589999999998776432 113999965
No 480
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=40.16 E-value=2.9e+02 Score=29.51 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=35.2
Q ss_pred ccCCCEEEEcCCcccCC----cccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhc
Q 001149 530 QDGPDILVCDEAHMIKN----TRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 586 (1138)
Q Consensus 530 ~~~~dlVIlDEaH~iKN----~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~ 586 (1138)
...||+||+||.-..-. +-..+-.++..-...--+++||.-.+..+.|+..++.=++
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm~ 180 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEMR 180 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhcc
Confidence 34899999999754322 2233344444445666799999766666666665554443
No 481
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=39.94 E-value=9.9 Score=41.83 Aligned_cols=39 Identities=26% Similarity=0.587 Sum_probs=29.0
Q ss_pred CCceeecCCccccccccccccCCCcccccccccCCCceeecC
Q 001149 202 SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 202 gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
...+|||..|-.++|..||.... .+..+..--+|+|.-|
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~---elv~~~KTY~W~C~~C 314 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIP---ELVGQYKTYFWKCSSC 314 (381)
T ss_pred hccceeecccccCCCCcchhcCH---HHHhHHhhcchhhccc
Confidence 34789999999999999987432 2222455678998888
No 482
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=39.84 E-value=6.4e+02 Score=30.19 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=23.9
Q ss_pred ccCeEEEEecCCCCCChhHHHHHhhhhccC
Q 001149 559 KCQRRIALTGSPLQNNLMEYYCMVDFVREG 588 (1138)
Q Consensus 559 ~~~~RllLTGTPlqNnl~El~~ll~fL~p~ 588 (1138)
....-++|++|-=.+.+.+++..+.++...
T Consensus 312 ~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 312 SIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred cceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 345668999998888889998888887654
No 483
>PHA00350 putative assembly protein
Probab=39.73 E-value=58 Score=38.80 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=13.2
Q ss_pred EEEcCCCccHHHHHHHH
Q 001149 415 ILAHTMGLGKTFQVIAF 431 (1138)
Q Consensus 415 ILADeMGLGKTlqaIa~ 431 (1138)
|+---.|.|||+-|+.+
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 34456899999999984
No 484
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.39 E-value=4.3e+02 Score=31.58 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=31.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc----chHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV----NVLHNWKQEFM 463 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~----sll~qW~~E~~ 463 (1138)
+.-.+++-..|.|||-++..+...+... .+++.+|.-- ..+.||..-..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~----g~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ----NRTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCccCccHHHHHHHHhh
Confidence 3445567889999999988887665443 2456666632 23667765443
No 485
>PRK08506 replicative DNA helicase; Provisional
Probab=39.37 E-value=3.9e+02 Score=32.79 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=35.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 462 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~ 462 (1138)
+|.=.|+|...|.|||.-++.++...... ..+++++..---..+....+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~----g~~V~~fSlEMs~~ql~~Rl 239 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ----DKGVAFFSLEMPAEQLMLRM 239 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc----CCcEEEEeCcCCHHHHHHHH
Confidence 34456899999999999999988776532 35888888655555555444
No 486
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=39.34 E-value=2.7e+02 Score=31.82 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 439 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~ 439 (1138)
|...|-..++.+...+.. ..-..++|... |.||+..|.+|+..++...
T Consensus 3 l~~~q~~~~~~L~~~~~~--------~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 3 LKQKQPKVFQRFQTILEQ--------DRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 556677777666544321 23334444444 6899999999998887543
No 487
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=39.32 E-value=2.2e+02 Score=32.23 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=25.3
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
.-.+|.-..|.|||.++..++..+.... +.+++.+|.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~--g~~~V~li~ 231 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEH--GNKKVALIT 231 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHc--CCCeEEEEE
Confidence 3455678899999999988887765431 123566665
No 488
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.16 E-value=5.4 Score=49.88 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=27.2
Q ss_pred cccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+|.+|-..=.=..=-.|..+||..|+..-.+... =.||-|..
T Consensus 645 kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq---------RKCP~Cn~ 686 (698)
T KOG0978|consen 645 KCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ---------RKCPKCNA 686 (698)
T ss_pred eCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc---------CCCCCCCC
Confidence 5777663332222245999999999886665442 34999964
No 489
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=38.58 E-value=54 Score=34.29 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=24.7
Q ss_pred CCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc--hHHHHHHHHHH
Q 001149 420 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN--VLHNWKQEFMK 464 (1138)
Q Consensus 420 MGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s--ll~qW~~E~~k 464 (1138)
-|.|||-|+=.+...+...+ . ++++..|.. .......++..
T Consensus 5 DGsGKtT~~~~L~~~l~~~~---~-~~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKG---Y-KVIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTT---E-EEEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC---C-cccccCCCCCChHHHHHHHHHh
Confidence 48999999877766654432 2 366666654 34444444443
No 490
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=38.34 E-value=14 Score=26.87 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=12.3
Q ss_pred cccccCCCC---ceeecCCcccccccccc
Q 001149 195 YCVWCGRSS---DLVSCKSCKTLFCTTCV 220 (1138)
Q Consensus 195 ~C~~C~~gg---~l~~Cd~C~~~f~~~C~ 220 (1138)
.|.+|+..+ -...|..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 588898554 58999999999999984
No 491
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=38.21 E-value=58 Score=40.06 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.-..+.++.-.=|.|||-.|=.|+..+..
T Consensus 36 ri~hAYlfsG~RGvGKTt~Ari~AkalNC 64 (515)
T COG2812 36 RIAHAYLFSGPRGVGKTTIARILAKALNC 64 (515)
T ss_pred cchhhhhhcCCCCcCchhHHHHHHHHhcC
Confidence 34567888899999999887777666543
No 492
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=37.84 E-value=2.3e+02 Score=34.89 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 465 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw 465 (1138)
.+.-.++.-+.|.|||+-++-|+....... ..++|.|.--....++.+.+..+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~---ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHF---DEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEEecCHHHHHHHHHHc
Confidence 456678899999999999999987654431 23778888555555555555544
No 493
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=37.74 E-value=4.9e+02 Score=31.31 Aligned_cols=47 Identities=15% Similarity=-0.022 Sum_probs=32.3
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
|.=.+|+...|.|||.-++.++....... ..+++++..---..+...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~---g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKE---GKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC---CCeEEEEeCcCCHHHHHH
Confidence 34468899999999999998887654321 247888886544444333
No 494
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=37.68 E-value=82 Score=35.25 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLY 433 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~ 433 (1138)
.+...+|-.+.|.|||..|-++..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHH
Confidence 457889999999999998888765
No 495
>PF12846 AAA_10: AAA-like domain
Probab=37.27 E-value=59 Score=36.36 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=32.3
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E 461 (1138)
...++.-.+|.|||..+..++..+...+ .+++|+=|..-...|.+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g----~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG----PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC----CCEEEEcCCchHHHHHHh
Confidence 4678889999999998887777666553 367777677544444433
No 496
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.12 E-value=11 Score=45.12 Aligned_cols=48 Identities=17% Similarity=0.511 Sum_probs=34.5
Q ss_pred cccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 193 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 193 ~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+.+|.+|-..-..-+--+|...||..||-.-+..++. ...=.|++|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~-----~~~~~CPiC~s 233 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAI-----KGPCSCPICRS 233 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcc-----cCCccCCchhh
Confidence 5579999888777777779999999999755544411 23345999954
No 497
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=37.02 E-value=98 Score=35.62 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+.+.||+-+-|+|||...|-+...+
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~Ial 113 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIAL 113 (402)
T ss_pred cCeeEEEecCCcccHhHHHHHHHHHH
Confidence 56789999999999998776655443
No 498
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=36.98 E-value=13 Score=34.17 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=27.3
Q ss_pred ccccCCCCc--eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 196 CVWCGRSSD--LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 196 C~~C~~gg~--l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
|.-|.-.|+ .++-..|...||..||..-+..... .=.|++|..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-------~~~CPmCR~ 79 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-------KGQCPMCRQ 79 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-------CCCCCCcCC
Confidence 344444443 2233459999999999888765421 128999964
No 499
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=36.74 E-value=73 Score=38.29 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=19.6
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
..+.+|.-++|.|||..|=++...
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 467888999999999988777544
No 500
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=36.45 E-value=18 Score=27.32 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=17.4
Q ss_pred eeeccCCCcccccccccccccccCcccHh
Q 001149 150 FYCTACNNVAIEVHPHPILNVIVCKDCKC 178 (1138)
Q Consensus 150 ~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~ 178 (1138)
-.|.-||+...+-...-.|...+|..|++
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CRD 32 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCRD 32 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-S
T ss_pred chHhHhCCHHHHHHHHHhCCccccccccC
Confidence 57999999877767788889999999975
Done!