Query 001149
Match_columns 1138
No_of_seqs 663 out of 2791
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 1.7E-78 5.7E-83 755.0 41.5 525 370-967 43-578 (644)
2 3mwy_W Chromo domain-containin 100.0 1.3E-72 4.5E-77 718.6 36.3 487 379-963 233-736 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 3.3E-69 1.1E-73 653.7 35.8 469 371-962 27-498 (500)
4 3dmq_A RNA polymerase-associat 100.0 1E-47 3.4E-52 496.9 26.2 444 381-941 152-638 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 5.4E-42 1.8E-46 409.3 24.9 446 381-936 8-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 4.4E-42 1.5E-46 382.4 21.8 256 635-962 13-269 (271)
7 2fwr_A DNA repair protein RAD2 100.0 1.4E-37 4.9E-42 373.7 20.9 376 381-935 92-471 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 9.9E-34 3.4E-38 346.1 34.1 474 381-941 6-530 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 3.8E-34 1.3E-38 365.2 29.0 482 374-942 238-772 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 7.2E-34 2.5E-38 367.0 27.4 481 374-941 238-771 (936)
11 3tbk_A RIG-I helicase domain; 100.0 7.8E-33 2.7E-37 337.7 31.8 472 382-941 4-529 (555)
12 3ql9_A Transcriptional regulat 100.0 5.4E-34 1.9E-38 274.1 5.4 116 146-261 5-126 (129)
13 3a1b_A DNA (cytosine-5)-methyl 100.0 3.7E-34 1.3E-38 282.0 -2.9 121 129-255 21-143 (159)
14 2oca_A DAR protein, ATP-depend 100.0 8.7E-31 3E-35 317.7 23.9 349 381-925 112-465 (510)
15 2ykg_A Probable ATP-dependent 100.0 1.5E-29 5.1E-34 318.4 29.6 450 381-924 12-522 (696)
16 2lbm_A Transcriptional regulat 100.0 1E-31 3.5E-36 262.9 5.5 120 143-262 8-133 (142)
17 4gl2_A Interferon-induced heli 100.0 6.1E-30 2.1E-34 322.1 21.1 469 381-941 6-542 (699)
18 3hgt_A HDA1 complex subunit 3; 100.0 3.6E-30 1.2E-34 286.9 15.8 212 647-927 20-246 (328)
19 3h1t_A Type I site-specific re 100.0 7.1E-29 2.4E-33 306.5 21.0 368 380-915 176-558 (590)
20 2pv0_B DNA (cytosine-5)-methyl 100.0 1.1E-30 3.8E-35 293.9 -0.1 126 122-253 28-155 (386)
21 1xti_A Probable ATP-dependent 100.0 1.6E-26 5.5E-31 269.5 31.6 318 382-912 30-353 (391)
22 1hv8_A Putative ATP-dependent 99.9 9.7E-27 3.3E-31 268.3 25.0 315 382-919 28-346 (367)
23 2z0m_A 337AA long hypothetical 99.9 1.1E-26 3.9E-31 264.7 19.6 315 382-928 16-334 (337)
24 1s2m_A Putative ATP-dependent 99.9 5.9E-26 2E-30 265.9 24.3 317 382-918 43-365 (400)
25 2j0s_A ATP-dependent RNA helic 99.9 5.5E-26 1.9E-30 267.2 24.0 321 382-918 59-383 (410)
26 3eiq_A Eukaryotic initiation f 99.9 9.7E-26 3.3E-30 265.0 18.6 321 382-918 62-387 (414)
27 3pey_A ATP-dependent RNA helic 99.9 4E-25 1.4E-29 257.4 23.3 315 382-912 27-352 (395)
28 1fuu_A Yeast initiation factor 99.9 5.2E-26 1.8E-30 265.2 15.8 315 382-912 43-362 (394)
29 2db3_A ATP-dependent RNA helic 99.9 2.6E-23 8.8E-28 247.2 28.4 318 382-916 78-405 (434)
30 2i4i_A ATP-dependent RNA helic 99.9 6.4E-24 2.2E-28 249.9 21.6 124 776-918 260-383 (417)
31 3fht_A ATP-dependent RNA helic 99.9 2.7E-23 9.2E-28 243.8 26.3 116 777-910 252-373 (412)
32 3oiy_A Reverse gyrase helicase 99.9 6.2E-22 2.1E-26 233.4 30.1 302 382-915 21-362 (414)
33 1oyw_A RECQ helicase, ATP-depe 99.9 1.8E-22 6.2E-27 245.1 25.7 305 382-912 25-339 (523)
34 3sqw_A ATP-dependent RNA helic 99.9 4.2E-22 1.4E-26 245.3 23.5 109 791-912 286-394 (579)
35 2eyq_A TRCF, transcription-rep 99.9 5.7E-22 1.9E-26 259.9 25.5 314 382-917 603-921 (1151)
36 2v1x_A ATP-dependent DNA helic 99.9 1.1E-21 3.7E-26 241.1 25.8 118 778-912 253-370 (591)
37 3i5x_A ATP-dependent RNA helic 99.9 1.5E-21 5.2E-26 239.4 23.8 112 791-917 337-448 (563)
38 3fho_A ATP-dependent RNA helic 99.9 2.3E-22 8E-27 243.7 10.0 315 382-912 141-466 (508)
39 1gm5_A RECG; helicase, replica 99.9 1.9E-21 6.5E-26 244.2 17.8 312 382-912 368-693 (780)
40 2xgj_A ATP-dependent RNA helic 99.9 1.4E-20 4.9E-25 243.3 26.4 135 778-918 330-499 (1010)
41 3l9o_A ATP-dependent RNA helic 99.8 2.8E-20 9.6E-25 242.5 25.4 135 782-920 429-599 (1108)
42 3fmp_B ATP-dependent RNA helic 99.8 1.2E-21 4.2E-26 235.5 10.8 116 778-911 320-441 (479)
43 2va8_A SSO2462, SKI2-type heli 99.8 1.8E-18 6E-23 218.4 27.8 342 382-919 30-409 (715)
44 2p6r_A Afuhel308 helicase; pro 99.8 2.9E-19 9.9E-24 225.0 19.3 335 382-921 25-391 (702)
45 2zj8_A DNA helicase, putative 99.8 9.7E-19 3.3E-23 220.8 22.1 336 382-922 23-391 (720)
46 4a4z_A Antiviral helicase SKI2 99.8 3.2E-18 1.1E-22 221.3 27.1 146 776-928 321-502 (997)
47 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 4.4E-18 1.5E-22 219.0 25.3 170 381-573 270-441 (1038)
48 4ddu_A Reverse gyrase; topoiso 99.7 1.4E-16 4.8E-21 207.7 27.2 158 382-574 78-264 (1104)
49 1rif_A DAR protein, DNA helica 99.7 2.1E-17 7.2E-22 184.7 12.4 165 381-587 112-278 (282)
50 1gku_B Reverse gyrase, TOP-RG; 99.7 1.3E-15 4.4E-20 198.7 22.0 151 383-571 58-226 (1054)
51 1t5i_A C_terminal domain of A 99.7 6.9E-16 2.4E-20 159.6 14.8 121 773-911 13-133 (172)
52 2hjv_A ATP-dependent RNA helic 99.6 7.8E-16 2.7E-20 157.7 12.2 133 773-927 17-149 (163)
53 2jgn_A DBX, DDX3, ATP-dependen 99.6 1.3E-16 4.6E-21 167.0 6.5 127 773-918 27-153 (185)
54 2v6i_A RNA helicase; membrane, 99.6 3.3E-15 1.1E-19 177.1 16.1 99 793-912 171-287 (431)
55 2fz4_A DNA repair protein RAD2 99.6 5E-15 1.7E-19 161.3 14.8 140 380-574 91-232 (237)
56 1fuk_A Eukaryotic initiation f 99.6 2.8E-15 9.7E-20 153.8 10.3 125 776-920 14-139 (165)
57 2p6n_A ATP-dependent RNA helic 99.6 2.5E-15 8.6E-20 158.2 10.1 125 773-918 37-161 (191)
58 1yks_A Genome polyprotein [con 99.5 7.5E-15 2.6E-19 174.5 11.2 93 792-905 176-287 (440)
59 2jlq_A Serine protease subunit 99.5 5.9E-15 2E-19 176.0 10.3 98 793-911 188-306 (451)
60 2rb4_A ATP-dependent RNA helic 99.5 2.7E-14 9.3E-19 147.9 12.8 123 777-919 20-148 (175)
61 2z83_A Helicase/nucleoside tri 99.5 1.3E-14 4.4E-19 173.4 11.6 104 793-918 190-313 (459)
62 2yjt_D ATP-dependent RNA helic 99.3 7.7E-16 2.6E-20 158.9 0.0 119 776-912 15-133 (170)
63 2wv9_A Flavivirin protease NS2 99.5 3.2E-14 1.1E-18 176.6 12.5 97 792-909 409-526 (673)
64 3eaq_A Heat resistant RNA depe 99.5 6.8E-14 2.3E-18 149.7 11.7 126 773-918 13-138 (212)
65 3rc3_A ATP-dependent RNA helic 99.5 6E-13 2E-17 164.8 20.2 108 795-917 322-444 (677)
66 1tf5_A Preprotein translocase 99.5 2.9E-13 9.9E-18 167.5 17.1 114 776-907 415-536 (844)
67 2whx_A Serine protease/ntpase/ 99.5 1.8E-13 6.2E-18 168.7 14.2 103 792-916 354-476 (618)
68 2xau_A PRE-mRNA-splicing facto 99.5 8.5E-13 2.9E-17 166.7 20.0 124 792-920 302-445 (773)
69 2d7d_A Uvrabc system protein B 99.5 1.1E-11 3.8E-16 154.2 29.7 124 777-919 429-557 (661)
70 1nkt_A Preprotein translocase 99.5 6.7E-12 2.3E-16 155.1 27.2 114 776-907 443-608 (922)
71 2fsf_A Preprotein translocase 99.5 5.9E-13 2E-17 164.3 17.8 115 776-908 424-575 (853)
72 4f92_B U5 small nuclear ribonu 99.5 3.5E-12 1.2E-16 172.4 26.6 166 382-580 926-1101(1724)
73 2gxq_A Heat resistant RNA depe 99.5 5.9E-13 2E-17 140.9 15.2 157 382-570 23-185 (207)
74 3b6e_A Interferon-induced heli 99.4 2.3E-13 7.9E-18 144.6 11.3 164 380-569 31-216 (216)
75 1t6n_A Probable ATP-dependent 99.4 8.6E-13 3E-17 141.3 15.7 165 382-577 36-206 (220)
76 4f92_B U5 small nuclear ribonu 99.4 1.7E-12 5.8E-17 175.4 21.5 167 381-579 78-261 (1724)
77 2pl3_A Probable ATP-dependent 99.4 1.4E-12 4.7E-17 141.4 14.9 160 382-571 47-213 (236)
78 3i32_A Heat resistant RNA depe 99.4 1.1E-12 3.7E-17 147.6 11.9 126 773-918 10-135 (300)
79 1c4o_A DNA nucleotide excision 99.4 6.3E-10 2.1E-14 138.5 37.4 125 776-919 422-551 (664)
80 2oxc_A Probable ATP-dependent 99.4 4.7E-12 1.6E-16 136.8 15.5 158 382-570 46-208 (230)
81 1vec_A ATP-dependent RNA helic 99.4 5E-12 1.7E-16 133.7 14.6 159 382-570 25-187 (206)
82 3ber_A Probable ATP-dependent 99.3 5E-12 1.7E-16 138.5 14.1 160 382-571 65-228 (249)
83 1qde_A EIF4A, translation init 99.3 3E-12 1E-16 137.4 11.8 158 382-571 36-197 (224)
84 1q0u_A Bstdead; DEAD protein, 99.3 2.2E-12 7.5E-17 138.2 10.0 166 382-577 26-197 (219)
85 1wrb_A DJVLGB; RNA helicase, D 99.3 6.4E-12 2.2E-16 137.6 13.9 160 381-570 44-219 (253)
86 3jux_A Protein translocase sub 99.3 2.3E-11 7.8E-16 147.4 19.8 116 776-909 457-580 (822)
87 3o8b_A HCV NS3 protease/helica 99.3 6.3E-12 2.2E-16 154.2 14.9 102 792-921 395-517 (666)
88 3bor_A Human initiation factor 99.3 5.9E-12 2E-16 136.7 10.2 159 382-571 52-215 (237)
89 3iuy_A Probable ATP-dependent 99.2 5E-11 1.7E-15 128.3 14.4 158 382-570 42-208 (228)
90 3dkp_A Probable ATP-dependent 99.2 1.8E-11 6.1E-16 133.4 8.9 162 382-570 51-220 (245)
91 3ly5_A ATP-dependent RNA helic 99.2 7.9E-11 2.7E-15 130.0 12.6 160 382-571 76-243 (262)
92 3fe2_A Probable ATP-dependent 99.1 3.6E-10 1.2E-14 122.9 15.3 158 382-570 51-217 (242)
93 1mm2_A MI2-beta; PHD, zinc fin 99.1 4.2E-11 1.4E-15 101.2 3.5 58 187-250 3-60 (61)
94 1fp0_A KAP-1 corepressor; PHD 99.0 2E-10 6.7E-15 103.1 3.9 53 189-247 21-73 (88)
95 2l5u_A Chromodomain-helicase-D 98.9 3.2E-10 1.1E-14 95.8 3.2 58 184-247 2-59 (61)
96 3u5n_A E3 ubiquitin-protein li 98.8 1.1E-09 3.6E-14 116.5 3.6 53 188-246 2-54 (207)
97 1xwh_A Autoimmune regulator; P 98.8 1.1E-09 3.8E-14 94.1 2.9 50 190-245 5-54 (66)
98 2yql_A PHD finger protein 21A; 98.8 1.3E-09 4.6E-14 90.4 3.2 52 187-244 3-54 (56)
99 2puy_A PHD finger protein 21A; 98.8 1E-09 3.4E-14 92.5 2.3 51 190-246 2-52 (60)
100 3fmo_B ATP-dependent RNA helic 98.8 8.7E-09 3E-13 115.9 10.4 160 382-571 114-278 (300)
101 2lri_C Autoimmune regulator; Z 98.8 2.8E-09 9.6E-14 91.1 3.5 48 192-245 11-58 (66)
102 3o36_A Transcription intermedi 98.7 3.2E-09 1.1E-13 110.7 3.7 50 191-246 2-51 (184)
103 2ipc_A Preprotein translocase 98.7 1.1E-07 3.7E-12 117.7 17.6 153 382-582 79-239 (997)
104 2ro1_A Transcription intermedi 98.6 8.1E-09 2.8E-13 107.8 3.1 49 193-247 2-50 (189)
105 2yt5_A Metal-response element- 98.6 1.8E-08 6E-13 86.7 2.5 56 188-246 1-61 (66)
106 2e6s_A E3 ubiquitin-protein li 98.4 1.4E-07 4.9E-12 83.1 4.5 48 192-245 25-76 (77)
107 3v43_A Histone acetyltransfera 98.4 1.7E-07 5.8E-12 89.4 4.9 77 147-246 24-112 (112)
108 2ku3_A Bromodomain-containing 98.4 8.2E-08 2.8E-12 83.3 1.8 50 189-246 12-66 (71)
109 1f62_A Transcription factor WS 98.4 1.1E-07 3.9E-12 77.2 2.4 45 195-245 2-49 (51)
110 4gne_A Histone-lysine N-methyl 98.4 1.7E-07 5.9E-12 87.7 3.9 50 187-244 9-60 (107)
111 1wev_A Riken cDNA 1110020M19; 98.3 1.4E-07 4.7E-12 85.7 2.2 51 193-245 16-71 (88)
112 2l43_A N-teminal domain from h 98.3 1.1E-07 3.9E-12 86.2 1.6 47 192-246 24-75 (88)
113 3llm_A ATP-dependent RNA helic 98.3 2.9E-06 9.8E-11 91.7 12.0 152 382-571 61-219 (235)
114 2e6r_A Jumonji/ARID domain-con 98.3 2.6E-07 8.8E-12 84.6 3.0 50 190-245 13-65 (92)
115 3asl_A E3 ubiquitin-protein li 98.3 3.7E-07 1.3E-11 79.1 3.8 46 194-245 19-68 (70)
116 2kwj_A Zinc finger protein DPF 98.3 3.2E-07 1.1E-11 87.7 3.5 76 147-245 21-107 (114)
117 2ysm_A Myeloid/lymphoid or mix 98.2 6.9E-07 2.4E-11 85.0 4.1 45 195-245 56-103 (111)
118 3ask_A E3 ubiquitin-protein li 98.2 8.3E-07 2.8E-11 93.5 4.1 48 192-245 173-224 (226)
119 3crv_A XPD/RAD3 related DNA he 98.2 5E-06 1.7E-10 101.4 11.5 80 382-480 3-83 (551)
120 3shb_A E3 ubiquitin-protein li 98.1 1.9E-06 6.4E-11 75.9 4.5 68 164-244 4-75 (77)
121 2vl7_A XPD; helicase, unknown 98.0 1.2E-05 4.1E-10 97.7 11.1 99 782-900 372-475 (540)
122 2lv9_A Histone-lysine N-methyl 98.0 3.7E-06 1.3E-10 77.9 4.8 50 192-248 29-78 (98)
123 2ysm_A Myeloid/lymphoid or mix 98.0 3.2E-06 1.1E-10 80.4 3.6 50 189-244 3-55 (111)
124 1wil_A KIAA1045 protein; ring 97.9 3.1E-06 1E-10 73.5 1.5 58 188-245 10-75 (89)
125 1wen_A Inhibitor of growth fam 97.8 1.1E-05 3.9E-10 69.9 3.9 47 191-246 14-65 (71)
126 2k16_A Transcription initiatio 97.8 8.3E-06 2.8E-10 71.8 2.5 50 190-245 15-67 (75)
127 3c6w_A P28ING5, inhibitor of g 97.7 6.2E-06 2.1E-10 68.8 1.2 46 191-245 7-57 (59)
128 1weu_A Inhibitor of growth fam 97.7 1.5E-05 5.1E-10 72.2 3.6 47 191-246 34-85 (91)
129 2g6q_A Inhibitor of growth pro 97.7 9.3E-06 3.2E-10 68.4 1.1 45 192-245 10-59 (62)
130 2vnf_A ING 4, P29ING4, inhibit 97.6 1.5E-05 5.1E-10 66.8 1.6 45 192-245 9-58 (60)
131 4a15_A XPD helicase, ATP-depen 97.4 0.00033 1.1E-08 86.3 10.5 72 382-466 3-75 (620)
132 2jmi_A Protein YNG1, ING1 homo 97.4 6.7E-05 2.3E-09 67.8 2.5 46 190-244 23-74 (90)
133 2ri7_A Nucleosome-remodeling f 97.3 4.8E-05 1.7E-09 78.2 0.5 51 190-246 5-59 (174)
134 2kwj_A Zinc finger protein DPF 97.1 7.9E-05 2.7E-09 71.0 0.4 48 194-244 2-59 (114)
135 4b3f_X DNA-binding protein smu 97.1 0.0061 2.1E-07 75.5 17.2 70 379-465 186-256 (646)
136 1we9_A PHD finger family prote 96.9 0.00037 1.3E-08 59.1 2.8 52 190-246 3-58 (64)
137 3v43_A Histone acetyltransfera 96.8 0.00026 9E-09 67.2 1.1 48 194-244 6-62 (112)
138 3e1s_A Exodeoxyribonuclease V, 96.5 0.013 4.4E-07 71.4 13.1 132 380-573 187-318 (574)
139 2gk6_A Regulator of nonsense t 96.5 0.037 1.3E-06 68.2 17.0 67 381-464 179-246 (624)
140 2xzl_A ATP-dependent helicase 96.4 0.051 1.8E-06 68.7 18.3 68 381-465 359-427 (802)
141 2wjy_A Regulator of nonsense t 96.4 0.032 1.1E-06 70.5 16.4 67 381-464 355-422 (800)
142 3o70_A PHD finger protein 13; 96.2 0.0018 6.1E-08 55.6 2.2 54 185-246 11-67 (68)
143 1x4i_A Inhibitor of growth pro 96.2 0.0019 6.5E-08 55.7 2.2 47 191-246 4-55 (70)
144 3upu_A ATP-dependent DNA helic 96.0 0.021 7.1E-07 67.7 11.3 65 381-457 24-88 (459)
145 1wep_A PHF8; structural genomi 95.9 0.003 1E-07 55.9 2.4 51 190-246 9-63 (79)
146 1wew_A DNA-binding family prot 95.7 0.0026 8.7E-08 56.2 1.2 53 192-246 15-72 (78)
147 3lfu_A DNA helicase II; SF1 he 95.6 0.034 1.2E-06 68.6 11.2 87 378-480 5-92 (647)
148 1wee_A PHD finger family prote 95.6 0.004 1.4E-07 54.1 1.7 52 188-246 11-66 (72)
149 3kqi_A GRC5, PHD finger protei 95.4 0.0038 1.3E-07 54.7 0.9 51 190-246 7-61 (75)
150 2vl7_A XPD; helicase, unknown 95.2 0.043 1.5E-06 66.4 9.7 67 382-465 7-74 (540)
151 2rsd_A E3 SUMO-protein ligase 95.1 0.0063 2.1E-07 52.2 1.3 49 194-245 11-64 (68)
152 1w36_D RECD, exodeoxyribonucle 94.9 0.12 4E-06 63.5 12.6 153 384-576 151-304 (608)
153 2xb1_A Pygopus homolog 2, B-ce 94.4 0.0058 2E-07 57.1 -0.5 51 193-245 3-60 (105)
154 3kv5_D JMJC domain-containing 94.4 0.0064 2.2E-07 72.1 -0.5 56 185-246 29-88 (488)
155 2j9r_A Thymidine kinase; TK1, 93.9 0.2 6.8E-06 52.7 9.8 33 416-452 33-65 (214)
156 2o0j_A Terminase, DNA packagin 93.8 0.67 2.3E-05 53.3 15.0 157 382-586 163-327 (385)
157 2orw_A Thymidine kinase; TMTK, 93.8 0.04 1.4E-06 56.8 4.2 36 413-452 5-40 (184)
158 1xx6_A Thymidine kinase; NESG, 93.5 0.31 1.1E-05 50.5 10.3 38 411-452 8-45 (191)
159 3lqh_A Histone-lysine N-methyl 93.5 0.025 8.7E-07 58.0 2.0 50 195-246 4-63 (183)
160 4gne_A Histone-lysine N-methyl 93.3 0.048 1.6E-06 50.9 3.5 38 196-240 61-98 (107)
161 3cpe_A Terminase, DNA packagin 93.3 0.66 2.2E-05 56.6 14.6 154 382-582 163-323 (592)
162 1wem_A Death associated transc 93.1 0.014 4.6E-07 51.2 -0.6 53 191-246 14-70 (76)
163 1uaa_A REP helicase, protein ( 92.8 0.73 2.5E-05 57.0 14.2 84 382-481 2-87 (673)
164 2vpb_A Hpygo1, pygopus homolog 92.6 0.013 4.4E-07 49.7 -1.3 50 193-244 8-64 (65)
165 2b8t_A Thymidine kinase; deoxy 92.4 0.19 6.4E-06 53.4 6.9 39 410-452 11-49 (223)
166 3syl_A Protein CBBX; photosynt 92.1 0.12 4.1E-06 57.2 5.4 43 409-451 65-107 (309)
167 3vkw_A Replicase large subunit 91.0 0.33 1.1E-05 56.7 7.5 109 412-572 162-271 (446)
168 2orv_A Thymidine kinase; TP4A 91.0 0.67 2.3E-05 49.3 9.2 35 414-452 22-56 (234)
169 1a5t_A Delta prime, HOLB; zinc 90.3 1.4 4.8E-05 49.4 11.9 48 383-437 3-50 (334)
170 3pur_A Lysine-specific demethy 89.8 0.11 3.7E-06 61.2 2.1 84 148-246 11-94 (528)
171 1l8q_A Chromosomal replication 88.8 2.2 7.6E-05 47.3 12.0 41 410-454 36-76 (324)
172 3o7a_A PHD finger protein 13 v 88.2 0.21 7.3E-06 40.1 2.2 38 201-245 14-51 (52)
173 3e2i_A Thymidine kinase; Zn-bi 87.2 1.9 6.6E-05 45.3 9.3 35 414-452 31-65 (219)
174 2kgg_A Histone demethylase jar 87.0 0.25 8.6E-06 39.7 1.9 37 202-244 15-52 (52)
175 1w4r_A Thymidine kinase; type 86.5 4.8 0.00016 41.6 11.7 37 412-452 21-57 (195)
176 2r2a_A Uncharacterized protein 86.5 0.41 1.4E-05 49.8 3.8 39 532-570 87-132 (199)
177 3eie_A Vacuolar protein sortin 86.3 1.6 5.4E-05 48.7 8.8 25 410-434 50-74 (322)
178 3ec2_A DNA replication protein 86.2 6.6 0.00023 39.2 12.7 47 385-436 17-63 (180)
179 4b4t_J 26S protease regulatory 86.2 2.6 8.8E-05 48.6 10.5 46 409-461 180-225 (405)
180 2qby_B CDC6 homolog 3, cell di 85.9 2.6 9E-05 47.6 10.5 29 409-437 43-71 (384)
181 2z4s_A Chromosomal replication 85.5 4.1 0.00014 47.5 12.2 27 411-437 130-156 (440)
182 3te6_A Regulatory protein SIR3 84.8 15 0.00051 40.9 15.7 29 409-437 43-71 (318)
183 2qp9_X Vacuolar protein sortin 84.5 1.7 5.8E-05 49.3 8.0 26 410-435 83-108 (355)
184 3bos_A Putative DNA replicatio 83.8 2.9 9.9E-05 43.5 9.0 27 410-436 51-77 (242)
185 4a15_A XPD helicase, ATP-depen 83.2 1.4 4.8E-05 54.0 6.9 88 792-899 447-539 (620)
186 1jbk_A CLPB protein; beta barr 82.8 3.2 0.00011 41.1 8.5 28 410-437 42-69 (195)
187 4bbq_A Lysine-specific demethy 82.3 0.91 3.1E-05 42.9 3.8 40 205-246 75-114 (117)
188 2p65_A Hypothetical protein PF 80.7 4.5 0.00015 40.0 8.7 27 410-436 42-68 (187)
189 3h4m_A Proteasome-activating n 80.6 3.3 0.00011 44.8 8.2 26 409-434 49-74 (285)
190 2kiz_A E3 ubiquitin-protein li 79.3 0.4 1.4E-05 40.5 0.1 48 189-246 10-60 (69)
191 2qz4_A Paraplegin; AAA+, SPG7, 78.7 2.4 8.2E-05 45.1 6.1 25 410-434 38-62 (262)
192 1vyx_A ORF K3, K3RING; zinc-bi 78.3 0.3 1E-05 40.6 -1.0 48 190-245 3-55 (60)
193 1pjr_A PCRA; DNA repair, DNA r 78.0 3.1 0.00011 51.9 7.7 72 379-466 8-80 (724)
194 3u61_B DNA polymerase accessor 77.9 3.5 0.00012 45.7 7.4 41 532-572 105-147 (324)
195 3kv4_A PHD finger protein 8; e 77.9 0.27 9.2E-06 57.4 -1.8 40 202-246 17-56 (447)
196 1iym_A EL5; ring-H2 finger, ub 77.3 0.98 3.3E-05 36.0 1.9 42 194-245 6-51 (55)
197 2chg_A Replication factor C sm 76.6 11 0.00037 38.2 10.3 25 412-436 39-63 (226)
198 1g5t_A COB(I)alamin adenosyltr 76.5 5.1 0.00017 41.4 7.5 35 411-449 28-62 (196)
199 1xwi_A SKD1 protein; VPS4B, AA 76.3 3.2 0.00011 46.3 6.5 25 410-434 44-68 (322)
200 1x4j_A Ring finger protein 38; 75.9 0.47 1.6E-05 40.8 -0.4 44 192-245 22-68 (75)
201 2yu4_A E3 SUMO-protein ligase 75.6 1.2 4.1E-05 40.3 2.2 66 193-262 7-83 (94)
202 2csy_A Zinc finger protein 183 75.4 0.69 2.3E-05 40.4 0.5 48 189-246 11-58 (81)
203 2ect_A Ring finger protein 126 75.0 1.1 3.6E-05 38.8 1.6 47 190-246 12-61 (78)
204 2v1u_A Cell division control p 75.0 6.1 0.00021 44.4 8.5 29 409-437 42-70 (387)
205 2d8s_A Cellular modulator of i 74.9 0.84 2.9E-05 40.2 0.9 49 190-246 12-67 (80)
206 2ecm_A Ring finger and CHY zin 74.6 0.68 2.3E-05 36.9 0.2 44 192-245 4-51 (55)
207 3vfd_A Spastin; ATPase, microt 73.7 4.3 0.00015 46.4 6.8 40 410-456 147-186 (389)
208 4b4t_I 26S protease regulatory 73.5 6.3 0.00021 45.7 8.0 44 409-459 214-257 (437)
209 2l0b_A E3 ubiquitin-protein li 72.6 0.89 3E-05 40.8 0.5 45 191-245 38-85 (91)
210 1fnn_A CDC6P, cell division co 72.4 24 0.0008 39.5 12.6 23 413-435 46-68 (389)
211 3d8b_A Fidgetin-like protein 1 71.9 6.5 0.00022 44.4 7.7 25 410-434 116-140 (357)
212 3mi9_C Protein TAT; P-TEFB, HI 71.7 0.93 3.2E-05 39.5 0.4 24 211-261 22-45 (86)
213 1iqp_A RFCS; clamp loader, ext 71.3 22 0.00074 38.8 11.7 24 412-435 47-70 (327)
214 4b4t_L 26S protease subunit RP 70.4 4.2 0.00015 47.4 5.7 43 409-458 213-255 (437)
215 1bor_A Transcription factor PM 69.1 3.3 0.00011 33.4 3.2 42 192-246 5-46 (56)
216 4b4t_H 26S protease regulatory 68.9 10 0.00036 44.3 8.5 43 409-458 241-283 (467)
217 2ecl_A Ring-box protein 2; RNF 68.7 1.3 4.6E-05 38.7 0.8 32 205-246 42-73 (81)
218 2xeu_A Ring finger protein 4; 68.0 0.89 3.1E-05 37.4 -0.5 45 192-246 2-53 (64)
219 2d8t_A Dactylidin, ring finger 67.5 1.9 6.4E-05 36.5 1.5 44 192-246 14-58 (71)
220 2gno_A DNA polymerase III, gam 66.6 21 0.00071 39.4 10.2 23 411-433 18-40 (305)
221 3hjh_A Transcription-repair-co 66.3 15 0.00053 43.2 9.5 87 411-509 14-115 (483)
222 3cf0_A Transitional endoplasmi 66.0 3.2 0.00011 45.7 3.4 26 409-434 47-72 (301)
223 1njg_A DNA polymerase III subu 65.7 23 0.0008 36.0 9.9 24 412-435 46-69 (250)
224 2dr3_A UPF0273 protein PH0284; 65.7 72 0.0024 32.9 13.9 50 410-463 22-71 (247)
225 2zan_A Vacuolar protein sortin 65.4 7.4 0.00025 45.4 6.5 41 410-456 166-206 (444)
226 3lrq_A E3 ubiquitin-protein li 65.4 2.1 7.2E-05 39.0 1.4 43 195-246 24-67 (100)
227 1d2n_A N-ethylmaleimide-sensit 65.3 21 0.0007 38.2 9.7 26 409-434 62-87 (272)
228 2ecw_A Tripartite motif-contai 63.5 2 6.9E-05 37.3 0.9 49 193-246 19-68 (85)
229 1sxj_D Activator 1 41 kDa subu 63.2 22 0.00075 39.3 9.7 25 412-436 59-83 (353)
230 1chc_A Equine herpes virus-1 r 62.8 1.3 4.5E-05 37.0 -0.4 44 193-246 5-49 (68)
231 1sxj_B Activator 1 37 kDa subu 62.5 18 0.00062 39.3 8.8 24 413-436 44-67 (323)
232 4ap4_A E3 ubiquitin ligase RNF 62.3 1.5 5E-05 41.8 -0.3 66 171-246 49-122 (133)
233 3hu3_A Transitional endoplasmi 61.2 5.7 0.0002 47.0 4.5 25 409-433 236-260 (489)
234 1jm7_B BARD1, BRCA1-associated 60.7 4.4 0.00015 38.0 2.7 39 195-245 24-63 (117)
235 2ce7_A Cell division protein F 60.7 18 0.00062 42.5 8.7 25 410-434 48-72 (476)
236 3l11_A E3 ubiquitin-protein li 60.0 3 0.0001 38.9 1.5 42 195-246 17-59 (115)
237 3dm5_A SRP54, signal recogniti 59.7 24 0.00084 41.0 9.4 35 412-450 101-135 (443)
238 2ysl_A Tripartite motif-contai 59.6 3.7 0.00013 34.6 1.9 46 193-246 20-66 (73)
239 3b9p_A CG5977-PA, isoform A; A 59.5 13 0.00046 40.2 6.9 25 410-434 53-77 (297)
240 1t1h_A Gspef-atpub14, armadill 59.4 2.1 7.2E-05 36.9 0.2 43 193-245 8-51 (78)
241 2qby_A CDC6 homolog 1, cell di 59.0 22 0.00074 39.6 8.7 28 409-436 43-70 (386)
242 2q6t_A DNAB replication FORK h 58.8 73 0.0025 36.8 13.5 50 410-462 199-248 (444)
243 2ecn_A Ring finger protein 141 58.6 2.6 9E-05 35.4 0.7 42 192-244 14-55 (70)
244 1gm5_A RECG; helicase, replica 58.5 24 0.00081 44.3 9.6 104 773-887 397-500 (780)
245 2ecy_A TNF receptor-associated 58.1 1.8 6E-05 36.1 -0.5 44 194-246 16-59 (66)
246 2yur_A Retinoblastoma-binding 57.9 2.4 8.2E-05 36.3 0.3 45 193-245 15-60 (74)
247 3htk_C E3 SUMO-protein ligase 57.8 3.7 0.00013 44.2 1.9 44 194-245 182-228 (267)
248 1v87_A Deltex protein 2; ring- 57.8 2.3 7.8E-05 39.6 0.2 33 208-245 58-90 (114)
249 2r6a_A DNAB helicase, replicat 57.7 58 0.002 37.8 12.4 48 410-460 202-249 (454)
250 3rsn_A SET1/ASH2 histone methy 57.1 5.1 0.00017 40.5 2.6 48 198-247 9-60 (177)
251 2ecv_A Tripartite motif-contai 57.0 2.7 9.3E-05 36.5 0.6 48 194-246 20-68 (85)
252 1jm7_A BRCA1, breast cancer ty 56.3 2.5 8.6E-05 39.1 0.2 44 195-245 23-66 (112)
253 2ckl_B Ubiquitin ligase protei 56.1 2 6.8E-05 43.0 -0.6 43 195-246 56-99 (165)
254 2ea6_A Ring finger protein 4; 56.1 2.4 8.2E-05 35.3 0.0 43 193-245 15-64 (69)
255 2ku7_A MLL1 PHD3-CYP33 RRM chi 56.0 3.3 0.00011 39.6 1.0 41 205-247 2-45 (140)
256 3cf2_A TER ATPase, transitiona 55.1 12 0.0004 47.1 6.0 43 409-458 509-551 (806)
257 1r6b_X CLPA protein; AAA+, N-t 55.0 41 0.0014 41.8 11.1 26 410-435 206-231 (758)
258 3kl4_A SRP54, signal recogniti 54.7 31 0.0011 40.0 9.1 35 412-450 98-132 (433)
259 4ayc_A E3 ubiquitin-protein li 54.7 2.6 9E-05 40.8 0.1 41 195-245 55-95 (138)
260 1jr3_A DNA polymerase III subu 54.4 30 0.001 38.4 9.0 24 412-435 39-62 (373)
261 2ct2_A Tripartite motif protei 54.0 3.1 0.00011 36.5 0.4 46 193-246 15-65 (88)
262 1ojl_A Transcriptional regulat 53.7 70 0.0024 34.9 11.5 24 410-433 24-47 (304)
263 2ecj_A Tripartite motif-contai 53.5 5.6 0.00019 31.7 1.9 44 193-243 15-58 (58)
264 2kjq_A DNAA-related protein; s 53.5 26 0.00088 34.1 7.1 26 410-435 35-60 (149)
265 2ep4_A Ring finger protein 24; 53.4 2.5 8.5E-05 36.0 -0.3 45 191-246 13-61 (74)
266 3ng2_A RNF4, snurf, ring finge 53.3 2.6 9E-05 35.3 -0.2 44 193-246 10-60 (71)
267 2y43_A E3 ubiquitin-protein li 53.1 3 0.0001 37.8 0.1 41 195-245 24-65 (99)
268 1e4u_A Transcriptional repress 51.5 6.8 0.00023 34.1 2.2 45 192-246 10-59 (78)
269 1tac_A TAT protein; transcript 51.4 3.9 0.00013 35.7 0.6 17 211-244 22-38 (86)
270 2egp_A Tripartite motif-contai 51.3 6 0.0002 33.8 1.8 49 194-246 13-62 (79)
271 2c2l_A CHIP, carboxy terminus 51.3 4.8 0.00016 43.5 1.5 61 192-261 207-274 (281)
272 2ysj_A Tripartite motif-contai 51.1 3.8 0.00013 33.6 0.5 43 193-243 20-63 (63)
273 2zet_C Melanophilin; complex, 51.1 6 0.00021 39.2 2.0 45 193-246 68-117 (153)
274 1w5s_A Origin recognition comp 51.0 51 0.0018 37.1 10.3 26 411-436 50-77 (412)
275 1xp8_A RECA protein, recombina 50.6 33 0.0011 38.9 8.3 46 410-459 73-118 (366)
276 3pvs_A Replication-associated 50.2 19 0.00066 41.9 6.5 24 411-434 50-73 (447)
277 3fl2_A E3 ubiquitin-protein li 49.9 2.7 9.2E-05 39.9 -0.8 27 210-245 69-95 (124)
278 4b4t_M 26S protease regulatory 49.3 8.2 0.00028 44.9 3.1 45 409-460 213-257 (434)
279 2ct0_A Non-SMC element 1 homol 49.0 6 0.0002 34.1 1.4 31 207-245 30-60 (74)
280 3bh0_A DNAB-like replicative h 48.1 2.6E+02 0.0089 30.4 15.1 49 410-462 67-115 (315)
281 3ztg_A E3 ubiquitin-protein li 47.8 8.9 0.0003 33.9 2.5 46 193-246 13-59 (92)
282 1z6u_A NP95-like ring finger p 47.7 3.1 0.00011 41.1 -0.8 27 210-245 95-121 (150)
283 3dpl_R Ring-box protein 1; ubi 47.4 4.5 0.00015 37.5 0.4 31 206-246 68-98 (106)
284 2zr9_A Protein RECA, recombina 47.2 38 0.0013 38.1 8.1 45 410-458 60-104 (349)
285 2y1n_A E3 ubiquitin-protein li 46.3 3.8 0.00013 46.8 -0.4 44 194-246 333-376 (389)
286 4a1f_A DNAB helicase, replicat 46.2 1.2E+02 0.0042 33.7 12.0 47 410-460 45-91 (338)
287 1vma_A Cell division protein F 45.9 29 0.00099 38.3 6.8 33 414-450 107-139 (306)
288 1g25_A CDK-activating kinase a 45.8 3.7 0.00013 33.9 -0.4 44 194-246 4-52 (65)
289 3k1l_B Fancl; UBC, ring, RWD, 45.8 6.7 0.00023 43.7 1.5 32 193-224 308-347 (381)
290 1sxj_A Activator 1 95 kDa subu 45.5 55 0.0019 38.7 9.6 25 411-435 77-101 (516)
291 2cvh_A DNA repair and recombin 44.8 1.3E+02 0.0043 30.3 11.2 44 410-460 19-64 (220)
292 1nkw_Y 50S ribosomal protein L 44.5 6.4 0.00022 33.8 0.8 43 148-191 12-54 (73)
293 4a0k_B E3 ubiquitin-protein li 44.1 5.6 0.00019 37.6 0.5 28 209-246 82-109 (117)
294 4b4t_K 26S protease regulatory 43.7 11 0.00037 43.9 2.9 43 409-458 204-246 (428)
295 2djb_A Polycomb group ring fin 43.3 5.8 0.0002 33.5 0.4 44 193-246 15-59 (72)
296 3k9g_A PF-32 protein; ssgcid, 43.2 76 0.0026 33.5 9.5 38 417-459 34-73 (267)
297 1d4u_A Nucleotide excision rep 42.9 4 0.00014 38.1 -0.7 31 150-180 6-36 (111)
298 3dzy_D Peroxisome proliferator 42.9 7.9 0.00027 44.9 1.6 32 149-184 50-81 (419)
299 4ic3_A E3 ubiquitin-protein li 42.8 7.7 0.00026 33.1 1.1 39 194-246 25-64 (74)
300 2lq6_A Bromodomain-containing 42.7 8.1 0.00028 34.4 1.3 28 194-221 18-49 (87)
301 4dzz_A Plasmid partitioning pr 41.5 79 0.0027 31.6 8.9 38 418-459 9-48 (206)
302 3bgw_A DNAB-like replicative h 41.5 2.9E+02 0.01 31.8 14.8 40 410-453 196-235 (444)
303 2ckl_A Polycomb group ring fin 41.0 5 0.00017 36.9 -0.4 43 194-246 16-59 (108)
304 1vs6_Z 50S ribosomal protein L 40.6 13 0.00043 31.8 2.0 43 147-190 11-54 (70)
305 1qvr_A CLPB protein; coiled co 40.4 62 0.0021 40.9 9.4 27 410-436 190-216 (854)
306 2px0_A Flagellar biosynthesis 40.1 62 0.0021 35.3 8.3 36 412-450 106-141 (296)
307 3fkq_A NTRC-like two-domain pr 40.1 1E+02 0.0036 34.5 10.5 31 416-450 149-179 (373)
308 3u4q_A ATP-dependent helicase/ 39.9 37 0.0013 44.9 7.5 62 379-456 7-70 (1232)
309 1wim_A KIAA0161 protein; ring 39.6 9.3 0.00032 34.1 1.2 50 193-246 5-61 (94)
310 3oiy_A Reverse gyrase helicase 39.6 70 0.0024 36.2 9.0 99 773-883 44-145 (414)
311 1sxj_E Activator 1 40 kDa subu 39.5 1.6E+02 0.0054 32.2 11.8 24 413-436 38-61 (354)
312 3v2d_4 50S ribosomal protein L 39.2 7.1 0.00024 33.3 0.3 43 148-191 12-54 (71)
313 2yho_A E3 ubiquitin-protein li 38.6 9.6 0.00033 33.1 1.1 39 194-246 19-58 (79)
314 2w58_A DNAI, primosome compone 38.0 80 0.0028 31.6 8.3 25 412-436 55-79 (202)
315 1wgm_A Ubiquitin conjugation f 37.5 15 0.00053 33.2 2.3 59 193-261 22-88 (98)
316 3cf2_A TER ATPase, transitiona 37.2 43 0.0015 42.0 7.1 25 409-433 236-260 (806)
317 2f42_A STIP1 homology and U-bo 37.0 6 0.00021 40.2 -0.6 44 192-244 105-148 (179)
318 3f1f_4 50S ribosomal protein L 36.9 12 0.0004 33.9 1.3 49 142-191 32-80 (97)
319 3hct_A TNF receptor-associated 36.1 5.7 0.0002 37.2 -0.8 42 194-245 19-61 (118)
320 3crv_A XPD/RAD3 related DNA he 36.1 1.3E+02 0.0044 35.7 10.9 100 780-903 379-487 (551)
321 2zpa_A Uncharacterized protein 35.9 65 0.0022 39.4 8.1 53 382-453 175-227 (671)
322 1u94_A RECA protein, recombina 35.5 97 0.0033 34.8 9.1 40 410-453 62-101 (356)
323 2eyq_A TRCF, transcription-rep 35.3 1.1E+02 0.0037 40.2 10.7 99 774-883 633-731 (1151)
324 2ea5_A Cell growth regulator w 34.8 16 0.00055 30.6 1.9 41 192-246 14-55 (68)
325 3t15_A Ribulose bisphosphate c 34.8 45 0.0015 36.2 6.0 40 409-455 34-73 (293)
326 2qgz_A Helicase loader, putati 34.2 40 0.0014 37.0 5.5 26 411-436 152-177 (308)
327 3knv_A TNF receptor-associated 33.6 6.9 0.00023 38.1 -0.8 42 194-245 32-74 (141)
328 1qf8_A Casein kinase II; casei 32.8 12 0.00041 38.0 0.8 34 210-244 108-141 (182)
329 2ecg_A Baculoviral IAP repeat- 32.7 13 0.00046 31.6 1.0 38 195-246 27-65 (75)
330 3u4q_B ATP-dependent helicase/ 32.4 40 0.0014 44.3 5.9 64 416-480 6-70 (1166)
331 3cmu_A Protein RECA, recombina 32.0 1.7E+02 0.006 40.4 11.9 43 410-456 1426-1468(2050)
332 1cr0_A DNA primase/helicase; R 31.9 1.7E+02 0.0058 31.3 10.2 39 410-451 34-72 (296)
333 3t6p_A Baculoviral IAP repeat- 31.7 17 0.00058 40.9 1.9 39 194-246 296-335 (345)
334 2kre_A Ubiquitin conjugation f 31.5 12 0.00041 34.1 0.5 43 192-245 28-71 (100)
335 1zbd_B Rabphilin-3A; G protein 31.3 18 0.0006 35.0 1.7 47 193-245 55-106 (134)
336 3k1j_A LON protease, ATP-depen 30.9 1.5E+02 0.0052 35.6 10.5 50 410-459 59-118 (604)
337 4ap4_A E3 ubiquitin ligase RNF 30.7 12 0.0004 35.3 0.3 44 193-246 7-57 (133)
338 1um8_A ATP-dependent CLP prote 30.7 32 0.0011 38.7 4.1 25 410-434 71-95 (376)
339 3sxu_A DNA polymerase III subu 30.3 1.5E+02 0.0051 28.9 8.3 40 776-815 22-61 (150)
340 3nhm_A Response regulator; pro 29.1 1.8E+02 0.006 26.2 8.5 95 792-904 26-123 (133)
341 4ddu_A Reverse gyrase; topoiso 27.9 1.3E+02 0.0046 39.1 9.7 99 773-883 101-202 (1104)
342 2ct7_A Ring finger protein 31; 27.7 32 0.0011 30.3 2.6 16 205-220 43-58 (86)
343 3cmu_A Protein RECA, recombina 27.0 1.6E+02 0.0054 40.8 10.2 46 410-459 731-776 (2050)
344 1zu4_A FTSY; GTPase, signal re 26.9 3.1E+02 0.011 30.0 11.3 33 414-450 108-140 (320)
345 2c9o_A RUVB-like 1; hexameric 26.9 54 0.0018 38.1 5.2 26 410-435 62-87 (456)
346 2vje_B MDM4 protein; proto-onc 26.8 17 0.00057 30.0 0.6 47 190-246 4-53 (63)
347 2kr4_A Ubiquitin conjugation f 26.6 11 0.00039 33.1 -0.5 44 192-245 13-56 (85)
348 1byi_A Dethiobiotin synthase; 26.6 60 0.0021 33.1 5.1 33 415-451 6-38 (224)
349 3hws_A ATP-dependent CLP prote 26.6 73 0.0025 35.5 6.1 25 410-434 50-74 (363)
350 1rmd_A RAG1; V(D)J recombinati 26.5 10 0.00035 35.2 -0.9 42 195-246 25-67 (116)
351 2js4_A UPF0434 protein BB2007; 26.4 18 0.00062 30.8 0.7 41 166-223 4-44 (70)
352 4dpp_A DHDPS 2, dihydrodipicol 26.4 96 0.0033 34.9 6.9 100 828-928 92-207 (360)
353 3uk6_A RUVB-like 2; hexameric 26.0 71 0.0024 35.4 5.9 46 384-435 49-94 (368)
354 3hr8_A Protein RECA; alpha and 25.8 1.6E+02 0.0053 33.1 8.5 42 412-457 62-103 (356)
355 4dgl_A Casein kinase II subuni 24.5 15 0.00051 38.2 -0.2 33 211-244 109-141 (215)
356 2zts_A Putative uncharacterize 24.4 1.1E+02 0.0037 31.4 6.7 50 411-463 30-79 (251)
357 2vje_A E3 ubiquitin-protein li 24.0 10 0.00035 31.4 -1.3 45 192-246 7-54 (64)
358 1g41_A Heat shock protein HSLU 23.4 71 0.0024 37.1 5.2 25 410-434 49-73 (444)
359 1ofh_A ATP-dependent HSL prote 23.1 1.5E+02 0.0052 31.5 7.7 26 410-435 49-74 (310)
360 1u6t_A SH3 domain-binding glut 22.6 1.5E+02 0.0051 27.9 6.4 45 796-852 2-53 (121)
361 2k0a_A PRE-mRNA-splicing facto 21.9 39 0.0013 30.7 2.0 37 151-203 31-68 (109)
362 3hjn_A DTMP kinase, thymidylat 21.9 94 0.0032 31.6 5.3 20 418-437 7-26 (197)
363 2d8v_A Zinc finger FYVE domain 21.1 42 0.0014 28.0 1.9 30 190-220 5-35 (67)
364 1tue_A Replication protein E1; 20.9 68 0.0023 33.3 3.9 24 412-435 59-82 (212)
365 2l82_A Designed protein OR32; 20.7 2.2E+02 0.0076 25.8 6.6 47 795-853 4-50 (162)
366 1dl6_A Transcription factor II 20.6 36 0.0012 27.8 1.4 11 167-177 8-18 (58)
367 3i42_A Response regulator rece 20.2 1.3E+02 0.0046 26.8 5.6 104 781-905 18-124 (127)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-78 Score=755.04 Aligned_cols=525 Identities=32% Similarity=0.555 Sum_probs=431.8
Q ss_pred CccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc---CCCce
Q 001149 370 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL---GLRTA 446 (1138)
Q Consensus 370 ~~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~---~~k~v 446 (1138)
...+.+|+.+...|+|||++||+|||+.+.. .....+.||||||+||||||+|+|+++..++..... ..+++
T Consensus 43 ~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~-----~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~ 117 (644)
T 1z3i_X 43 PVHVVVDPVLSKVLRPHQREGVKFLWDCVTG-----RRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKV 117 (644)
T ss_dssp CCCEECCHHHHTTCCHHHHHHHHHHHHHHTT-----SSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCE
T ss_pred CceEeeChhhhhcccHHHHHHHHHHHHhhhc-----ccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcE
Confidence 3456788999999999999999999986421 001356799999999999999999999998765432 24679
Q ss_pred EEEeCcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhh------cCCEEEEccchhhcccccccccchh
Q 001149 447 LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA------KGGVFLIGYTAFRNLSFGKHVKDRN 520 (1138)
Q Consensus 447 LIV~P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~------~~~VvIity~~~r~l~~~~~~~~~~ 520 (1138)
|||||.+++.||.+||.+|++.. +.++.+++.....+...+..|.. ..+|+|+||++++..
T Consensus 118 LiV~P~sll~qW~~E~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---------- 184 (644)
T 1z3i_X 118 IVVSPSSLVRNWYNEVGKWLGGR---VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH---------- 184 (644)
T ss_dssp EEEECHHHHHHHHHHHHHHHGGG---CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH----------
T ss_pred EEEecHHHHHHHHHHHHHHcCCC---eeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh----------
Confidence 99999999999999999999752 44555555555444444555543 357999999998742
Q ss_pred hHHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhc
Q 001149 521 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 600 (1138)
Q Consensus 521 ~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f 600 (1138)
...+....|++||+||||++||+.++.++++..+++.+||+|||||+||++.|||++++|+.|++|++..+|.++|
T Consensus 185 ----~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f 260 (644)
T 1z3i_X 185 ----AEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRF 260 (644)
T ss_dssp ----TTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHT
T ss_pred ----HHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhh
Confidence 1123345899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccc
Q 001149 601 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR 680 (1138)
Q Consensus 601 ~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~ 680 (1138)
..|+..+...+.+..+...+..+...|+.++.+|++||++.++..+||++.+++++|+||+.|+++|+.++.........
T Consensus 261 ~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~ 340 (644)
T 1z3i_X 261 EIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL 340 (644)
T ss_dssp HHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS
T ss_pred cchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888889999999999999999999999999999999999999999999999998765332111
Q ss_pred cchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhh
Q 001149 681 VSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDW 760 (1138)
Q Consensus 681 ~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 760 (1138)
.........+..+..|+++|+||.++............ .. .+..... .
T Consensus 341 -~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~--------~~--------------~~~~~~~----~----- 388 (644)
T 1z3i_X 341 -QTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFD--------GA--------------LDLFPQN----Y----- 388 (644)
T ss_dssp -CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCT--------TG--------------GGTSCSS----C-----
T ss_pred -hcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhh--------hH--------------Hhhcccc----c-----
Confidence 11122345788899999999999987532211100000 00 0000000 0
Q ss_pred hhhhhhcccccccCCCchHHHHHHHHHHhhc-CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCC
Q 001149 761 WNDLLHEHTYKELDYSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT 839 (1138)
Q Consensus 761 ~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~-~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGst 839 (1138)
.........|+|+.+|..++..+.. .++|+||||+++.++++|+.+|.. .|+.|.+++|++
T Consensus 389 ------~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~------------~g~~~~~l~G~~ 450 (644)
T 1z3i_X 389 ------STKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN------------RRYLYVRLDGTM 450 (644)
T ss_dssp ------CSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH------------HTCCEEEECSSC
T ss_pred ------cccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH------------CCCCEEEEeCCC
Confidence 0000122458999999999988753 589999999999999999999986 689999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 840 ESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 840 s~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
+.++|++++++|+++.+. ..+||+||++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||+|++.+|
T Consensus 451 ~~~~R~~~i~~F~~~~~~-~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 451 SIKKRAKIVERFNNPSSP-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CHHHHHHHHHHHHSTTCC-CCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CHHHHHHHHHHhcCCCCC-cEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999999999986443 3479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcccc-cccccCCHHHHHHcccCCCCCCCCh
Q 001149 920 MEEKIYKRQVTKEGLAARVVDRQ-QVHRTISKEEMLHLFEFGDDENPDP 967 (1138)
Q Consensus 920 iEekI~~rq~~K~~l~~~vvd~~-~~~r~~s~~el~~Lf~~~~~~~~~~ 967 (1138)
+||+|+++|..|+.+++.++++. ...+.|+.+||.+||+++++...++
T Consensus 530 iEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~~~~~t 578 (644)
T 1z3i_X 530 IEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDT 578 (644)
T ss_dssp HHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSSCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhCCCCCccchh
Confidence 99999999999999999999986 4568999999999999998765544
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-72 Score=718.63 Aligned_cols=487 Identities=30% Similarity=0.416 Sum_probs=382.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 379 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 379 l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
....|+|||++||.||+... ..+.||||||+||||||+|+|+++..++.... ..+|+|||||.+++.||
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~----------~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P~sll~qW 301 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLW----------SKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVPLSTMPAW 301 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHH----------TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECCTTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh----------hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-CCCCEEEEECchHHHHH
Confidence 35789999999999997653 46789999999999999999999988765433 35799999999999999
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHH----------HhhcCCEEEEccchhhcccccccccchhhHHHHhhh
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK----------WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 528 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~----------~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~ 528 (1138)
.+||.+|+|. +.+..+++............ .....+|+|+||+++... ...+
T Consensus 302 ~~E~~~~~p~----~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~--------------~~~l 363 (800)
T 3mwy_W 302 LDTFEKWAPD----LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD--------------RAEL 363 (800)
T ss_dssp HHHHHHHSTT----CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT--------------HHHH
T ss_pred HHHHHHHCCC----ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh--------------HHHH
Confidence 9999999986 77888888665433221111 123567999999998641 1223
Q ss_pred hccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCC
Q 001149 529 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQ 608 (1138)
Q Consensus 529 l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~ 608 (1138)
....|++|||||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|.-...
T Consensus 364 ~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~------- 436 (800)
T 3mwy_W 364 GSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ------- 436 (800)
T ss_dssp HTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-------
T ss_pred hcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc-------
Confidence 3448999999999999999999999999999999999999999999999999999999999987666532111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHh
Q 001149 609 HTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 688 (1138)
Q Consensus 609 ~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~ 688 (1138)
.. ........|+.++.+|++||++.++...||++.+.+++|+||+.|+.+|+.++......... .......
T Consensus 437 ----~~----~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-~~~~~~~ 507 (800)
T 3mwy_W 437 ----DE----EQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA-GAKGGHF 507 (800)
T ss_dssp ----TT----HHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-----------C
T ss_pred ----ch----hHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh-ccccchh
Confidence 01 11234566899999999999999999999999999999999999999999998754322211 1222335
Q ss_pred hHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcc
Q 001149 689 SFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEH 768 (1138)
Q Consensus 689 ~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~ 768 (1138)
+++..+..|+++|+||.++........... ...........
T Consensus 508 ~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~--------------------------------~~~~~~~~~~~------- 548 (800)
T 3mwy_W 508 SLLNIMNELKKASNHPYLFDNAEERVLQKF--------------------------------GDGKMTRENVL------- 548 (800)
T ss_dssp THHHHHHHHHHHHHCGGGSSSHHHHHCCCC------------------------------------CCSHHHH-------
T ss_pred hHHHHHHHHHHHhcChhhhcchHHHHHHhc--------------------------------ccccccHHHHH-------
Confidence 688999999999999998753321100000 00000000000
Q ss_pred cccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHH
Q 001149 769 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 848 (1138)
Q Consensus 769 ~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i 848 (1138)
...+..|+|+.+|.++|..+...|+|+|||||++.++++|+.+|.. .|+.|.+++|+++..+|+.++
T Consensus 549 -~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~------------~g~~~~~i~G~~~~~eR~~~i 615 (800)
T 3mwy_W 549 -RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI------------KGINFQRLDGTVPSAQRRISI 615 (800)
T ss_dssp -HHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH------------HTCCCEEESTTSCHHHHHHHH
T ss_pred -HHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHh------------CCCCEEEEeCCCCHHHHHHHH
Confidence 1123469999999999999999999999999999999999999986 689999999999999999999
Q ss_pred HHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHH
Q 001149 849 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 928 (1138)
Q Consensus 849 ~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq 928 (1138)
++|+++.. ...+||+||++||+||||++|++||+||++|||..+.||+||+||+||+++|+||||++.+|+|++|++++
T Consensus 616 ~~F~~~~~-~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~ 694 (800)
T 3mwy_W 616 DHFNSPDS-NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 694 (800)
T ss_dssp HTTSSTTC-SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred HHhhCCCC-CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 99998643 34579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccc-------cccCCHHHHHHcccCCCCC
Q 001149 929 VTKEGLAARVVDRQQV-------HRTISKEEMLHLFEFGDDE 963 (1138)
Q Consensus 929 ~~K~~l~~~vvd~~~~-------~r~~s~~el~~Lf~~~~~~ 963 (1138)
..|+.+...+++.... ...++.+||.+|+.++..+
T Consensus 695 ~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~ 736 (800)
T 3mwy_W 695 RKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGN 736 (800)
T ss_dssp HHHTTSCC----------------CCCCHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHh
Confidence 9999999999865321 2367899999999998854
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.3e-69 Score=653.68 Aligned_cols=469 Identities=30% Similarity=0.462 Sum_probs=394.6
Q ss_pred ccccCCchhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 371 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 371 ~~~~vp~~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
+++. |..+...|+|||.+|+.||+... ..+.|+||||+||+|||+|+++++..+...+. .+++||||
T Consensus 27 ~~~~-p~~~~~~L~~~Q~~~v~~l~~~~----------~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~ 93 (500)
T 1z63_A 27 QLLE-PYNIKANLRPYQIKGFSWMRFMN----------KLGFGICLADDMGLGKTLQTIAVFSDAKKENE--LTPSLVIC 93 (500)
T ss_dssp CCCC-CCSCSSCCCHHHHHHHHHHHHHH----------HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC--CSSEEEEE
T ss_pred ccCC-ChhhhccchHHHHHHHHHHHHHh----------hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC--CCCEEEEc
Confidence 3444 88899999999999999997543 24579999999999999999999988765533 56999999
Q ss_pred CcchHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhc
Q 001149 451 PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 530 (1138)
Q Consensus 451 P~sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~ 530 (1138)
|.+++.||.+||.+|+|. +++..+++.... ......+|+|+||+++.... .+..
T Consensus 94 P~~l~~qw~~e~~~~~~~----~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~---------------~l~~ 147 (500)
T 1z63_A 94 PLSVLKNWEEELSKFAPH----LRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDT---------------RLKE 147 (500)
T ss_dssp CSTTHHHHHHHHHHHCTT----SCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCH---------------HHHT
T ss_pred cHHHHHHHHHHHHHHCCC----ceEEEEecCchh-------ccccCCcEEEeeHHHHhccc---------------hhcC
Confidence 999999999999999986 667777765421 11246789999999986421 1234
Q ss_pred cCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCC
Q 001149 531 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 610 (1138)
Q Consensus 531 ~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~ 610 (1138)
..|++||+||||+++|..++.++++..+.+++||+|||||++|++.|+|++++|+.|+.+++...|.+.|..|+..+..
T Consensus 148 ~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~- 226 (500)
T 1z63_A 148 VEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN- 226 (500)
T ss_dssp CCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH-
T ss_pred CCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccH-
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999998876421
Q ss_pred CCChHHHHHHHHHHHHHHHHHhHHHhhhhhhh--hhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHh
Q 001149 611 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV--VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 688 (1138)
Q Consensus 611 ~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~--v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~ 688 (1138)
.....|...+.+++.||++.+ +...||++.+.+++++|++.|+.+|+.+..................
T Consensus 227 -----------~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 295 (500)
T 1z63_A 227 -----------MAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKG 295 (500)
T ss_dssp -----------HHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHH
T ss_pred -----------HHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 234457888999999988865 5668999999999999999999999988775433222222233345
Q ss_pred hHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcc
Q 001149 689 SFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEH 768 (1138)
Q Consensus 689 ~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~ 768 (1138)
..+..+..|+++|+||.++....
T Consensus 296 ~~~~~l~~lr~~~~~p~l~~~~~--------------------------------------------------------- 318 (500)
T 1z63_A 296 MILSTLLKLKQIVDHPALLKGGE--------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHTTCTHHHHCSC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCHHHhcCcc---------------------------------------------------------
Confidence 67888999999999998764100
Q ss_pred cccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHH
Q 001149 769 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 848 (1138)
Q Consensus 769 ~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i 848 (1138)
.....++|+..+.++|..+...++|+|||+++..+++.|..+|.. ..|+.+.+++|+++..+|++++
T Consensus 319 --~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~-----------~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 319 --QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp --CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHH-----------HHTCCCCEEETTSCHHHHHHHH
T ss_pred --chhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHH-----------hhCCCeEEEECCCCHHHHHHHH
Confidence 012458999999999999988999999999999999999999985 1378899999999999999999
Q ss_pred HHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHH
Q 001149 849 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 928 (1138)
Q Consensus 849 ~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq 928 (1138)
++|++++ .++++|+||+++|+||||++|++||+||++|||..+.||+||++|+||+++|+||+|++.+|+|++|++++
T Consensus 386 ~~F~~~~--~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 386 SKFQNNP--SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp HHHHHCT--TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred HHhcCCC--CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHH
Confidence 9999743 45568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccc-ccccCCHHHHHHcccCCCC
Q 001149 929 VTKEGLAARVVDRQQ-VHRTISKEEMLHLFEFGDD 962 (1138)
Q Consensus 929 ~~K~~l~~~vvd~~~-~~r~~s~~el~~Lf~~~~~ 962 (1138)
..|+.+++.+++..+ ....++.+||.+||.+.+.
T Consensus 464 ~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 464 AFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 498 (500)
T ss_dssp TTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHhhcCcchhccCCHHHHHHHhccCCC
Confidence 999999999998754 4578999999999998763
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1e-47 Score=496.87 Aligned_cols=444 Identities=19% Similarity=0.195 Sum_probs=321.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
..|+|||.+++.|++. ..+.|+||||+||+|||+++++++..++..+. .+++|||||.+|+.||..
T Consensus 152 ~~LrpyQ~eav~~~l~------------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~sLl~Qw~~ 217 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR------------RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPETLQHQWLV 217 (968)
T ss_dssp SCCCHHHHHHHHHHHH------------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCTTTHHHHHH
T ss_pred CCCcHHHHHHHHHHHH------------hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEeCHHHHHHHHH
Confidence 5799999999999975 34678999999999999999999998876653 468999999999999999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
||.+|++ +.+..+++.................+|+|+||+++.... .. ...+....|++||+||
T Consensus 218 E~~~~f~-----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~--------~~---~~~l~~~~~dlVIvDE 281 (968)
T 3dmq_A 218 EMLRRFN-----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSK--------QR---LEHLCEAEWDLLVVDE 281 (968)
T ss_dssp HHHHHSC-----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTST--------TT---THHHHTSCCCEEEECC
T ss_pred HHHHHhC-----CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCH--------HH---HHHhhhcCCCEEEehh
Confidence 9999984 344555543322111100011235689999999986421 00 1123345899999999
Q ss_pred CcccCCcccHH---HHHHHhc--ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCc---------cc
Q 001149 541 AHMIKNTRADT---TQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI---------EN 606 (1138)
Q Consensus 541 aH~iKN~~S~~---skal~~l--~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi---------~~ 606 (1138)
||+++|..+.. ++++..+ +++++|+|||||++|++.|+|++++|+.|+.+++...|...+.... ..
T Consensus 282 AH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~ 361 (968)
T 3dmq_A 282 AHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLA 361 (968)
T ss_dssp SSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhc
Confidence 99999877554 8888888 7889999999999999999999999999999999988876643211 00
Q ss_pred CCC---------C---------------CCChHHHHHHHHHHHHHHHHHh-----HHHhhhhhhhhhhcCCCCeEEEEEe
Q 001149 607 GQH---------T---------------NSTSEDVKIMNQRSHILYEQLK-----GFVQRMDMNVVKKDLPPKTVFVITV 657 (1138)
Q Consensus 607 g~~---------~---------------~s~~~~~~~~~~r~~~L~~~L~-----~~v~Rr~~~~v~~~LP~k~e~vv~v 657 (1138)
+.. . ...... ....+...+..++. ..+.|+.+..+ ..+|++..+.+.+
T Consensus 362 ~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l 438 (968)
T 3dmq_A 362 GNKLSNDELNMLGEMIGEQDIEPLLQAANSDSED--AQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKL 438 (968)
T ss_dssp SCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSC--STTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEE
T ss_pred cCCCCHHHHHHHHHHhcchhhHHHHhcccchhhh--hHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeec
Confidence 000 0 000000 00011122222222 22334444444 3789999999999
Q ss_pred cCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccC
Q 001149 658 KLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIG 737 (1138)
Q Consensus 658 ~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~ 737 (1138)
.+++.++.+|......... ..... . ...+.+|..+...
T Consensus 439 ~~~~~~~~~~~~~~~~~~~---~~~~~----~--------~~~~l~pe~~~~~--------------------------- 476 (968)
T 3dmq_A 439 PLPTQYQTAIKVSGIMGAR---KSAED----R--------ARDMLYPERIYQE--------------------------- 476 (968)
T ss_dssp CCCHHHHHHHHHHHHTTCC---SSGGG----G--------THHHHCSGGGTTT---------------------------
T ss_pred CCCHHHHHHHHHHhhhhhh---hhhHH----H--------HhhhcChHHHHHH---------------------------
Confidence 9999999988754322100 00000 0 0001112111000
Q ss_pred CCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCC
Q 001149 738 EKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLP 817 (1138)
Q Consensus 738 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~ 817 (1138)
+..........++|+..|.++|.. ..+.|+||||++..+++.|...|..
T Consensus 477 ---------------------------l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~-- 525 (968)
T 3dmq_A 477 ---------------------------FEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRE-- 525 (968)
T ss_dssp ---------------------------TTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHT--
T ss_pred ---------------------------hhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHH--
Confidence 000001123457899999999987 5689999999999999999999985
Q ss_pred CCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHH
Q 001149 818 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 897 (1138)
Q Consensus 818 ~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAi 897 (1138)
..|+.+..++|+++..+|+.++++|+++.+ .+. +||+|+++++|||++.|++||+||++|||..+.|++
T Consensus 526 ---------~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~-vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~ 594 (968)
T 3dmq_A 526 ---------REGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594 (968)
T ss_dssp ---------TTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCE-EEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHH
T ss_pred ---------HcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-ccc-EEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHh
Confidence 148999999999999999999999997431 254 578999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccc
Q 001149 898 YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 941 (1138)
Q Consensus 898 gR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~ 941 (1138)
||++|+||++.|+||+++..+|+|++|++.+..|..+....+..
T Consensus 595 GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 595 GRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp HTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred hccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCC
Confidence 99999999999999999999999999999998887765554443
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.4e-42 Score=409.34 Aligned_cols=446 Identities=17% Similarity=0.118 Sum_probs=276.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~ 459 (1138)
..|+|||.+++.|+++ + ++||+++||+|||+++++++...+.. ..+++|||||. .|+.||.
T Consensus 8 ~~l~~~Q~~~i~~~~~--------------~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~ 69 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE--------------T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHA 69 (494)
T ss_dssp HCCCHHHHHHHHHGGG--------------S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh--------------C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHH
Confidence 4799999999999853 2 89999999999999999998887652 25689999997 7999999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++|.+|+.. ....+..+++........ ......+|+|+||+.+...... ..+....|++||+|
T Consensus 70 ~~~~~~~~~--~~~~v~~~~g~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~------------~~~~~~~~~~vIiD 132 (494)
T 1wp9_A 70 ESFRRLFNL--PPEKIVALTGEKSPEERS---KAWARAKVIVATPQTIENDLLA------------GRISLEDVSLIVFD 132 (494)
T ss_dssp HHHHHHBCS--CGGGEEEECSCSCHHHHH---HHHHHCSEEEECHHHHHHHHHT------------TSCCTTSCSEEEEE
T ss_pred HHHHHHhCc--chhheEEeeCCcchhhhh---hhccCCCEEEecHHHHHHHHhc------------CCcchhhceEEEEE
Confidence 999999842 124667777655433211 1124678999999998643111 01223489999999
Q ss_pred CCcccCCcccHH--HHHHH-hcccCeEEEEecCCCCCChhHHHHHhhhhccCC---CCChHHHHhhccCCcccCCCCCCC
Q 001149 540 EAHMIKNTRADT--TQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF---LGSSHEFRNRFQNPIENGQHTNST 613 (1138)
Q Consensus 540 EaH~iKN~~S~~--skal~-~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~---lg~~~eF~~~f~~pi~~g~~~~s~ 613 (1138)
|||++++..+.. ...+. .....++|+|||||. |+..+++.++.++.+.. ......+...|..+..........
T Consensus 133 EaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (494)
T 1wp9_A 133 EAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDL 211 (494)
T ss_dssp TGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECC
T ss_pred CCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCC
Confidence 999999754322 22222 236789999999999 77777877777776442 222222222222221111000011
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHH-----HHHHHHHHHhhcccccccchHHH--
Q 001149 614 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQ-----RRLYKRFLDLHGFTNDRVSNEKI-- 686 (1138)
Q Consensus 614 ~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q-----~~lY~~~l~~~~~~~~~~~~~~~-- 686 (1138)
.. ....+...+.+++.++........+..... ..++... ..++. .+..... ........
T Consensus 212 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~ 277 (494)
T 1wp9_A 212 PE-------IYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINE-EMAKGNH--DLRGLLLYHA 277 (494)
T ss_dssp CH-------HHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHH-HHTTTCC--STTTHHHHHH
T ss_pred cH-------HHHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHH-Hhhcccc--chhhHHHHHH
Confidence 11 122345556666666555444333322111 1122221 11111 1111000 00000000
Q ss_pred ----------------HhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCC
Q 001149 687 ----------------RKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGK 750 (1138)
Q Consensus 687 ----------------~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~ 750 (1138)
...+...+..+...+.|+.... ......
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~-- 321 (494)
T 1wp9_A 278 MALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA----------------------------------SKEIFS-- 321 (494)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH----------------------------------HHHHHT--
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchh----------------------------------hhhhhh--
Confidence 0001111111222111110000 000000
Q ss_pred CCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhh--cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccC
Q 001149 751 NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 828 (1138)
Q Consensus 751 ~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~ 828 (1138)
.... ........ ........++|+..|.++|.... ..+.|+|||+++..+++.|..+|.. .
T Consensus 322 --~~~~-~~~~~~~~--~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~------------~ 384 (494)
T 1wp9_A 322 --DKRM-KKAISLLV--QAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK------------D 384 (494)
T ss_dssp --SHHH-HHHHHHHH--HHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH------------T
T ss_pred --hHHH-HHHHHHHH--HHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH------------c
Confidence 0000 00000000 00111256889999999999876 5689999999999999999999997 4
Q ss_pred CceEEEEeC--------CCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHH
Q 001149 829 GKDWYRLDG--------RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRA 900 (1138)
Q Consensus 829 Gi~~~rldG--------sts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~ 900 (1138)
|+.+.+++| +++..+|++++++|+++ .++ +|++|+++|+||||++|++||+||++|||..+.|++||+
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---~~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~ 460 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARG---EFN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 460 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHHHT---SCS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTS
T ss_pred CCCcEEEeccccccccccCCHHHHHHHHHHHhcC---Cce-EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhc
Confidence 899999999 89999999999999973 344 588999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 001149 901 WRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 936 (1138)
Q Consensus 901 ~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~ 936 (1138)
+|.|| +.+|+|++.+|+|+++|.++..|..+++
T Consensus 461 ~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 461 GRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp CSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred cCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99998 8999999999999999999999988765
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=4.4e-42 Score=382.38 Aligned_cols=256 Identities=29% Similarity=0.394 Sum_probs=194.8
Q ss_pred HhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHHHHhcCccccccccccC
Q 001149 635 VQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKG 714 (1138)
Q Consensus 635 v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~ 714 (1138)
-+||++.++..+||+|.+++++|+||+.|+++|+.++..................++..+..||++|+||.++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 35889999999999999999999999999999999887532211111122223467889999999999998874100
Q ss_pred CCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhhcCCC
Q 001149 715 YPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGD 794 (1138)
Q Consensus 715 ~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~ 794 (1138)
.....|+|+..|.++|..+...++
T Consensus 90 --------------------------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~ 113 (271)
T 1z5z_A 90 --------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEGD 113 (271)
T ss_dssp --------------------------------------------------------CCSTTCHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------------------------------------cccccCHHHHHHHHHHHHHHhCCC
Confidence 012458999999999999988899
Q ss_pred eEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCC
Q 001149 795 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 874 (1138)
Q Consensus 795 KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLN 874 (1138)
|+||||+++.+++.|+.+|.. ..|+.+.+++|+++..+|++++++|+++ +.++|||+||++||+|||
T Consensus 114 kvlIFs~~~~~~~~l~~~L~~-----------~~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~v~L~st~~~g~Gln 180 (271)
T 1z5z_A 114 KIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDIISKFQNN--PSVKFIVLSVKAGGFGIN 180 (271)
T ss_dssp CEEEEESCHHHHHHHHHHHHH-----------HHCSCCCEECTTSCHHHHHHHHHHHHHC--TTCCEEEEECCTTCCCCC
T ss_pred eEEEEeccHHHHHHHHHHHHH-----------hcCCcEEEEECCCCHHHHHHHHHHhcCC--CCCCEEEEehhhhcCCcC
Confidence 999999999999999999985 1388999999999999999999999984 345689999999999999
Q ss_pred cccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccccc-ccccCCHHHH
Q 001149 875 LHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTISKEEM 953 (1138)
Q Consensus 875 Lt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~~-~~r~~s~~el 953 (1138)
|++|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+||+|++++..|..+++.+++..+ ....|+.+||
T Consensus 181 l~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l 260 (271)
T 1z5z_A 181 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEEL 260 (271)
T ss_dssp CTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHH
T ss_pred cccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCchhhhcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998764 3468999999
Q ss_pred HHcccCCCC
Q 001149 954 LHLFEFGDD 962 (1138)
Q Consensus 954 ~~Lf~~~~~ 962 (1138)
.+||+++++
T Consensus 261 ~~l~~~~~~ 269 (271)
T 1z5z_A 261 RKVIELSVG 269 (271)
T ss_dssp HHHHSCCCT
T ss_pred HHHhccCCC
Confidence 999999875
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-37 Score=373.67 Aligned_cols=376 Identities=20% Similarity=0.188 Sum_probs=252.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~ 459 (1138)
..|+|||.+++.+++ .+.++||+++||+|||++++.++... .+++|||||. .|+.||.
T Consensus 92 ~~l~~~Q~~ai~~i~--------------~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~ 150 (472)
T 2fwr_A 92 ISLRDYQEKALERWL--------------VDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWK 150 (472)
T ss_dssp CCBCHHHHHHHHHHT--------------TTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH--------------hcCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHH
Confidence 479999999999774 23569999999999999999888764 3689999998 8999999
Q ss_pred HHHHHHCCCCCCCeE-EEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 460 QEFMKWRPSELKPLR-VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~-V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
++|.+| + +. +..+++... ...+|+|+||+++.... ..+...|++||+
T Consensus 151 ~~~~~~-~-----~~~v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~---------------~~~~~~~~liIv 198 (472)
T 2fwr_A 151 ERLGIF-G-----EEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNA---------------EKLGNRFMLLIF 198 (472)
T ss_dssp HHGGGG-C-----GGGEEEBSSSCB-----------CCCSEEEEEHHHHHHTH---------------HHHTTTCSEEEE
T ss_pred HHHHhC-C-----CcceEEECCCcC-----------CcCCEEEEEcHHHHHHH---------------HHhcCCCCEEEE
Confidence 999995 2 45 666666543 24689999999875311 122346999999
Q ss_pred cCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHH
Q 001149 539 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVK 618 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~ 618 (1138)
||||++.+.... ..+..+.+.++++|||||.++.-.+. .
T Consensus 199 DEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~----------------~----------------------- 237 (472)
T 2fwr_A 199 DEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE----------------I----------------------- 237 (472)
T ss_dssp ETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG----------------S-----------------------
T ss_pred ECCcCCCChHHH--HHHHhcCCCeEEEEecCccCCCCHHH----------------H-----------------------
Confidence 999999987543 46666788999999999986542210 0
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhh-hcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 619 IMNQRSHILYEQLKGFVQRMDMNVVK-KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 619 ~~~~r~~~L~~~L~~~v~Rr~~~~v~-~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
|...+.+.+.+....++. ..+++.....+.+.+++.++..|..+.........
T Consensus 238 --------l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------ 291 (472)
T 2fwr_A 238 --------LKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLR------------------ 291 (472)
T ss_dssp --------HHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSS------------------
T ss_pred --------HHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHH------------------
Confidence 111222222233333332 24777777888999999999988755432211000
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
...+... ....+... .. ........ ........ .........+.
T Consensus 292 -----~~~~~~~-~~~~~~~~-----------~~---~~~~~~~~---------~~~~~~~~-------~~~~~~~~~~~ 335 (472)
T 2fwr_A 292 -----ARGITLR-RAEDFNKI-----------VM---ASGYDERA---------YEALRAWE-------EARRIAFNSKN 335 (472)
T ss_dssp -----SCCCTTT-CCSSSTTT-----------TT---TTCCSSSS---------STTTHHHH-------HHHHHHHSCSH
T ss_pred -----hcCcccc-chhhHHHH-----------HH---HhccCHHH---------HHHHHHHH-------HHHHHhhcChH
Confidence 0000000 00000000 00 00000000 00000000 00001124578
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|+..|.++|.. ..++|+|||+++..+++.|...|.. ..++|+++..+|++++++|++ +
T Consensus 336 k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~~-----------------~~~~g~~~~~~R~~~~~~F~~---g 393 (472)
T 2fwr_A 336 KIRKLREILER--HRKDKIIIFTRHNELVYRISKVFLI-----------------PAITHRTSREEREEILEGFRT---G 393 (472)
T ss_dssp HHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTTC-----------------CBCCSSSCSHHHHTHHHHHHH---S
T ss_pred HHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhCc-----------------ceeeCCCCHHHHHHHHHHHhC---C
Confidence 99999999988 4689999999999999999988752 347899999999999999996 3
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCC-CcEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAYRLMAHGTMEEKIYKRQVTKEGLA 935 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~-k~V~VyrLv~~gTiEekI~~rq~~K~~l~ 935 (1138)
.++ +|++|+++++|+|++.++.||++|++|||..+.|++||++|.||. +.|+||+|++.+|+|+++++++..|.+++
T Consensus 394 ~~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 394 RFR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SCS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CCC-EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 444 479999999999999999999999999999999999999999999 89999999999999999999998887765
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.9e-34 Score=346.12 Aligned_cols=474 Identities=13% Similarity=0.110 Sum_probs=231.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccC-CCceEEEeCc-chHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG-LRTALIVTPV-NVLHNW 458 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~-~k~vLIV~P~-sll~qW 458 (1138)
..|+|||.+++.+++ .+.++|++++||+|||++++..+...+.....+ .+++|||||. .|+.||
T Consensus 6 ~~~~~~Q~~~i~~~~--------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 71 (556)
T 4a2p_A 6 KKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ 71 (556)
T ss_dssp --CCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------------cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHH
Confidence 468999999999884 246899999999999999988887766553211 4689999997 788999
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhh-hccCCCEEE
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA-LQDGPDILV 537 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~-l~~~~dlVI 537 (1138)
.+++.+|++.. .+.+..+++...... ....+....+|+|+|++.+....... .+ ....+++||
T Consensus 72 ~~~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~~vV 135 (556)
T 4a2p_A 72 KNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDG------------TLTSLSIFTLMI 135 (556)
T ss_dssp HHHHHHHHGGG--TCCEEECCCC-------CHHHHHHHCSEEEECHHHHHHHHHSS------------SCCCSTTCSEEE
T ss_pred HHHHHHHhccc--CceEEEEeCCCCcch--hHHHhhCCCCEEEECHHHHHHHHHhC------------cccccccCCEEE
Confidence 99999998631 266777766542211 11223346789999999986432110 11 123789999
Q ss_pred EcCCcccCCcccHHHHHHHhc---------ccCeEEEEecCCCCCChhHHH-------HHhhhhccC----CCCChHHHH
Q 001149 538 CDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYY-------CMVDFVREG----FLGSSHEFR 597 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l---------~~~~RllLTGTPlqNnl~El~-------~ll~fL~p~----~lg~~~eF~ 597 (1138)
+||||++.+... ....+..+ ...++++|||||.+++..++. .+...+... .-.....+.
T Consensus 136 iDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 214 (556)
T 4a2p_A 136 FDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 214 (556)
T ss_dssp EETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred EECCcccCCcch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHH
Confidence 999999987664 22222222 236799999999987654433 333333322 122344555
Q ss_pred hhccCCcccCCCCC--CChHHHHHHHHHHHHHHHHHhHHH----------------------hhhhhhhhhhcCCCCeEE
Q 001149 598 NRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFV----------------------QRMDMNVVKKDLPPKTVF 653 (1138)
Q Consensus 598 ~~f~~pi~~g~~~~--s~~~~~~~~~~r~~~L~~~L~~~v----------------------~Rr~~~~v~~~LP~k~e~ 653 (1138)
..+..|........ ...............+...+..+. ....+......+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----- 289 (556)
T 4a2p_A 215 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----- 289 (556)
T ss_dssp HHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC--------
T ss_pred hcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccc-----
Confidence 55555543221111 111111111111111222222111 0000000000111
Q ss_pred EEEecCCHHHHHHHHHHHHhhccccc--ccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccc
Q 001149 654 VITVKLSPLQRRLYKRFLDLHGFTND--RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMD 731 (1138)
Q Consensus 654 vv~v~Ls~~Q~~lY~~~l~~~~~~~~--~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d 731 (1138)
....+..+|..+......... .................+...+..- ...+... .+..
T Consensus 290 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~--------~~~~-- 348 (556)
T 4a2p_A 290 -----DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNV------KNGPYTE--------LEQH-- 348 (556)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH------HHSCCCH--------HHHH--
T ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH------HhcCCCH--------HHHH--
Confidence 111222222222110000000 0000000000011111111111100 0000000 0000
Q ss_pred cccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhh--cCCCeEEEEcCCcchHHHH
Q 001149 732 YNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLI 809 (1138)
Q Consensus 732 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KvLVFSq~~~~ld~L 809 (1138)
....+. .....+. .........++|+..|.++|.... ..+.|+|||++++.+++.|
T Consensus 349 ----------~~~~~~-----------~~~~~l~-~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l 406 (556)
T 4a2p_A 349 ----------LTAKFQ-----------EKEPELI-ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSAL 406 (556)
T ss_dssp ----------HHHHHH-----------TTHHHHH-HHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHH
T ss_pred ----------HHHHHh-----------hHHHHhh-hhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHH
Confidence 000000 0000000 001112245889999999998765 5689999999999999999
Q ss_pred HHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCC
Q 001149 810 EFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 889 (1138)
Q Consensus 810 e~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WN 889 (1138)
..+|...............|..+..++|+++..+|++++++|++ ++.++ +||+|+++++|||+++++.||+||++||
T Consensus 407 ~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~--~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s 483 (556)
T 4a2p_A 407 KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGN 483 (556)
T ss_dssp HHHHTTCSGGGSCCEEC--------------------------------CC-EEEEEC-----------CEEEEETCCSC
T ss_pred HHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc--cCceE-EEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 99998631000011112346677778889999999999999997 24455 5899999999999999999999999999
Q ss_pred cchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccc
Q 001149 890 PTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 941 (1138)
Q Consensus 890 P~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~ 941 (1138)
|..+.|++|| |+.+++.+|.|++.+++|++ +..+..|..++..++..
T Consensus 484 ~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 484 VTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp HHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHH
Confidence 9999999999 55588999999999999999 77888888888887764
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.8e-34 Score=365.19 Aligned_cols=482 Identities=13% Similarity=0.102 Sum_probs=240.0
Q ss_pred cCCchh--hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc-CCCceEEEe
Q 001149 374 RIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVT 450 (1138)
Q Consensus 374 ~vp~~l--~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~-~~k~vLIV~ 450 (1138)
..|..+ ...|+|||.+++.++. .+.++|++++||+|||++++..+...+..... ..+++||||
T Consensus 238 ~~~~~~~g~~~l~~~Q~~~i~~~l--------------~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~ 303 (797)
T 4a2q_A 238 GKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303 (797)
T ss_dssp ----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC
T ss_pred cCchhhcCCCCCCHHHHHHHHHHH--------------hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEe
Confidence 344444 5689999999999874 24789999999999999999888777655321 146899999
Q ss_pred Cc-chHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhh-
Q 001149 451 PV-NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA- 528 (1138)
Q Consensus 451 P~-sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~- 528 (1138)
|. .|+.||.++|.+|++.. .+.+..+++...... ....+....+|+|+||+.+....... .+
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~------------~~~ 367 (797)
T 4a2q_A 304 TKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDG------------TLT 367 (797)
T ss_dssp SSHHHHHHHHHHHHHHHGGG--TCCEEEECCC-------CHHHHHHTCSEEEECHHHHHHHHHSS------------SCC
T ss_pred CCHHHHHHHHHHHHHhcccC--CceEEEEeCCcchhh--hHHHhhCCCCEEEEchHHHHHHHHhc------------ccc
Confidence 95 58899999999998731 267777776543221 12233457899999999876432110 01
Q ss_pred hccCCCEEEEcCCcccCCcccHHHHHHHhc---------ccCeEEEEecCCCCCChhHHHHHhh-------hhccC----
Q 001149 529 LQDGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYCMVD-------FVREG---- 588 (1138)
Q Consensus 529 l~~~~dlVIlDEaH~iKN~~S~~skal~~l---------~~~~RllLTGTPlqNnl~El~~ll~-------fL~p~---- 588 (1138)
....|++||+||||++.+..+ ....+..+ ...++++|||||.+++..++..+++ .+...
T Consensus 368 ~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~ 446 (797)
T 4a2q_A 368 SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST 446 (797)
T ss_dssp CGGGCSEEEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccccCCEEEEECccccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEec
Confidence 123689999999999998654 33322222 2367999999999876544443332 22221
Q ss_pred CCCChHHHHhhccCCcccCCCCC--CChHHHHHHHHHHHHHHHHHhHHHh----------------------hhhhhhhh
Q 001149 589 FLGSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQ----------------------RMDMNVVK 644 (1138)
Q Consensus 589 ~lg~~~eF~~~f~~pi~~g~~~~--s~~~~~~~~~~r~~~L~~~L~~~v~----------------------Rr~~~~v~ 644 (1138)
.......+...+..|........ ...............++..+..++. ...+....
T Consensus 447 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~ 526 (797)
T 4a2q_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRL 526 (797)
T ss_dssp CCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHH
Confidence 22233556666665543322222 1111111111111222222222111 00000000
Q ss_pred hcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccc--cccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCcccc
Q 001149 645 KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTN--DRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAE 722 (1138)
Q Consensus 645 ~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~--~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~ 722 (1138)
..+|. ...+..+|..+........ ..................+...+.+..- .+...
T Consensus 527 ~~~~~----------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~----- 585 (797)
T 4a2q_A 527 LQLED----------KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKN------GPYTE----- 585 (797)
T ss_dssp CCCSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH------TTCCH-----
T ss_pred hcccc----------cchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhc------cCccH-----
Confidence 00110 1111111111110000000 0000000000011111112221111000 00000
Q ss_pred CCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhh--cCCCeEEEEc
Q 001149 723 DSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFS 800 (1138)
Q Consensus 723 d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KvLVFS 800 (1138)
.+. .....+. .....+ ..........++|+..|.++|.... ..+.|+|||+
T Consensus 586 ---~~~------------~l~~~~~-----------~~~~~l-~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 586 ---LEQ------------HLTAKFQ-----------EKEPEL-IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp ---HHH------------HHHHHHH-----------TTHHHH-HHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred ---HHH------------HHHHHHH-----------HHHHHH-HHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 000 0000000 000000 0000112245899999999998753 5679999999
Q ss_pred CCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCE
Q 001149 801 QSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANR 880 (1138)
Q Consensus 801 q~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~ 880 (1138)
+++.+++.|..+|...............|..+..++|+++..+|..++++|++ ++.++ +||+|+++|+|||+++++.
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~--~g~~~-vLVaT~~~~~GIDlp~v~~ 715 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNL 715 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------------CCS-EEEEECC-------CCCSE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc--cCCce-EEEEcCchhcCCCchhCCE
Confidence 99999999999998632111111122357778888999999999999999997 24444 6899999999999999999
Q ss_pred EEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcccc
Q 001149 881 VIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 942 (1138)
Q Consensus 881 VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~~ 942 (1138)
||+||++|||..+.||+|| |+.+++.+|.|++.++++++ +..+..|..++..++..-
T Consensus 716 VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l 772 (797)
T 4a2q_A 716 VVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI 772 (797)
T ss_dssp EEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 55588999999999999999 888889999988887653
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.2e-34 Score=367.03 Aligned_cols=481 Identities=13% Similarity=0.105 Sum_probs=237.2
Q ss_pred cCCchh--hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc-CCCceEEEe
Q 001149 374 RIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVT 450 (1138)
Q Consensus 374 ~vp~~l--~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~-~~k~vLIV~ 450 (1138)
..|..+ ...|+|||.+++.++. .+.++|++++||+|||++++..+...+..... ..+++||||
T Consensus 238 ~~~~~l~~~~~~r~~Q~~ai~~il--------------~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~ 303 (936)
T 4a2w_A 238 GKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303 (936)
T ss_dssp ----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEEC
T ss_pred cCcccccCCCCCCHHHHHHHHHHH--------------cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEe
Confidence 344444 5679999999999884 24789999999999999988887665544321 146899999
Q ss_pred Cc-chHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhh-
Q 001149 451 PV-NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA- 528 (1138)
Q Consensus 451 P~-sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~- 528 (1138)
|. .|+.||.++|.+|++.. .+.+..+++....... ...+....+|+|+||+++....... .+
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~G~~~~~~~--~~~~~~~~~IvI~Tp~~L~~~l~~~------------~~~ 367 (936)
T 4a2w_A 304 TKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDG------------TLT 367 (936)
T ss_dssp SSHHHHHHHHHHHHHHHHTT--TCCEEEECCC-----C--CHHHHHHCSEEEECHHHHHHHHHSS------------SCC
T ss_pred CCHHHHHHHHHHHHHHhccc--CceEEEEECCcchhhH--HHHhccCCCEEEecHHHHHHHHHcC------------ccc
Confidence 95 58899999999998742 3677777765422110 1222346789999999986432110 01
Q ss_pred hccCCCEEEEcCCcccCCcccHHHHHHHhc---------ccCeEEEEecCCCCCChhHHHHHhhh-------hccC----
Q 001149 529 LQDGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYCMVDF-------VREG---- 588 (1138)
Q Consensus 529 l~~~~dlVIlDEaH~iKN~~S~~skal~~l---------~~~~RllLTGTPlqNnl~El~~ll~f-------L~p~---- 588 (1138)
....|++||+||||++.+..+ ....+..+ ...++++|||||.+++..++..+++. +...
T Consensus 368 ~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~ 446 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST 446 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC
T ss_pred cccCCCEEEEECccccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeec
Confidence 123689999999999998764 33333222 22679999999998776555443332 2221
Q ss_pred CCCChHHHHhhccCCcccCCCCC--CChHHHHHHHHHHHHHHHHHhHHHh----------------------hhhhhhhh
Q 001149 589 FLGSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQ----------------------RMDMNVVK 644 (1138)
Q Consensus 589 ~lg~~~eF~~~f~~pi~~g~~~~--s~~~~~~~~~~r~~~L~~~L~~~v~----------------------Rr~~~~v~ 644 (1138)
.......+...+..|........ ...............++..+..++. ...+....
T Consensus 447 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~ 526 (936)
T 4a2w_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRL 526 (936)
T ss_dssp CCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 12233556655555543322211 1111111111111111222211111 00000000
Q ss_pred hcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccc--cccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCcccc
Q 001149 645 KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTN--DRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAE 722 (1138)
Q Consensus 645 ~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~--~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~ 722 (1138)
..+|. ...+..+|..+........ ...............+..+...+.... ..+..
T Consensus 527 ~~l~~----------~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~------~~~~~------ 584 (936)
T 4a2w_A 527 LQLED----------KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVK------NGPYT------ 584 (936)
T ss_dssp CCCSC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH------HTTCC------
T ss_pred hcccc----------cchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh------hccCC------
Confidence 01111 0111111211110000000 000000000001111111222111100 00000
Q ss_pred CCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhh--cCCCeEEEEc
Q 001149 723 DSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFS 800 (1138)
Q Consensus 723 d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KvLVFS 800 (1138)
.. ...+.. .+. .....+. .........++|+..|.++|.... ..+.|+|||+
T Consensus 585 ----~~--------------e~~l~~------~~~-~~~~~l~-~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 585 ----EL--------------EQHLTA------KFQ-EKEPELI-ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp ----HH--------------HHHHHH------HHH-HHHHHHH-HHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred ----HH--------------HHHHHH------HHH-HHHHHHH-HhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 00 000000 000 0000000 000111235899999999999864 4579999999
Q ss_pred CCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCE
Q 001149 801 QSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANR 880 (1138)
Q Consensus 801 q~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~ 880 (1138)
+++.+++.|..+|............+..|..+..++|+++..+|.+++++|++ ++.++ +||+|+++|+||||++++.
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~--~g~~~-VLVaT~~~~eGIDlp~v~~ 715 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNL 715 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------------CCS-EEEEECC------CCCCSE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc--cCCee-EEEEeCchhcCCcchhCCE
Confidence 99999999999999742111111122346777788999999999999999997 24454 5899999999999999999
Q ss_pred EEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccc
Q 001149 881 VIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 941 (1138)
Q Consensus 881 VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~ 941 (1138)
||+||++|||..+.||+|| |+.+++.+|.|++.+|+|++.+ .+..|..++..++..
T Consensus 716 VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 716 VVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp EEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999 5568888999999999999866 777777777777654
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.8e-33 Score=337.66 Aligned_cols=472 Identities=12% Similarity=0.107 Sum_probs=249.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc-CCCceEEEeCc-chHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~-~~k~vLIV~P~-sll~qW~ 459 (1138)
.|+|||.+++.++. .+.++|++++||+|||++++..+...+..... ..+++|||||. .|+.||.
T Consensus 4 ~~~~~Q~~~i~~~~--------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 69 (555)
T 3tbk_A 4 KPRNYQLELALPAK--------------KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQA 69 (555)
T ss_dssp CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHH
T ss_pred CCcHHHHHHHHHHh--------------CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 58999999999884 34789999999999999998888776654321 14689999997 7889999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhh-hccCCCEEEE
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA-LQDGPDILVC 538 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~-l~~~~dlVIl 538 (1138)
+++.+|++.. .+.+..+.+....... ...+....+|+|+||+.+....... .+ ....+++||+
T Consensus 70 ~~~~~~~~~~--~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~~vVi 133 (555)
T 3tbk_A 70 TVFSRYFERL--GYNIASISGATSDSVS--VQHIIEDNDIIILTPQILVNNLNNG------------AIPSLSVFTLMIF 133 (555)
T ss_dssp HHHHHHHHTT--TCCEEEECTTTGGGSC--HHHHHHHCSEEEECHHHHHHHHHTS------------SSCCGGGCSEEEE
T ss_pred HHHHHHhccC--CcEEEEEcCCCcchhh--HHHHhcCCCEEEECHHHHHHHHhcC------------cccccccCCEEEE
Confidence 9999998642 3566666665422111 1222346789999999986432110 01 1236899999
Q ss_pred cCCcccCCcccHHHHHHHhc---------ccCeEEEEecCCCCCChhHHHH-------HhhhhccCC----CCChHHHHh
Q 001149 539 DEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYC-------MVDFVREGF----LGSSHEFRN 598 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~l---------~~~~RllLTGTPlqNnl~El~~-------ll~fL~p~~----lg~~~eF~~ 598 (1138)
||||++.+..+........+ ...++++|||||.+++..++.. +..++.... -.....+..
T Consensus 134 DEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~ 213 (555)
T 3tbk_A 134 DECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQ 213 (555)
T ss_dssp TTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHT
T ss_pred ECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHh
Confidence 99999988764222221222 2257999999999987444433 334444321 123345555
Q ss_pred hccCCcccCCCCC--CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcc
Q 001149 599 RFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGF 676 (1138)
Q Consensus 599 ~f~~pi~~g~~~~--s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~ 676 (1138)
.+..|........ ...............+...+..+... ...+. .++. ..+.......|-..+.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~-~~~~-------~~~g~~~~~~~~~~~~~~~~ 283 (555)
T 3tbk_A 214 VVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEE--LGKLF-QIQN-------REFGTQKYEQWIVGVHKACS 283 (555)
T ss_dssp TCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHH--HHGGG-GCCS-------CCSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHh--hhhhh-hccc-------ccccchhhhHHHHHHHHHhh
Confidence 5555433221111 11111111111111222222211110 00000 0110 01111111111110000000
Q ss_pred cccccch---HHHHhhH----------------------HHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccc
Q 001149 677 TNDRVSN---EKIRKSF----------------------FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMD 731 (1138)
Q Consensus 677 ~~~~~~~---~~~~~~~----------------------l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d 731 (1138)
....... ......+ ...+..+...+.... ..... .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----------~---- 343 (555)
T 3tbk_A 284 VFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVR------EAAFD----------E---- 343 (555)
T ss_dssp TCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHC------C-------------------
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh------hcccc----------h----
Confidence 0000000 0000000 011111111110000 00000 0
Q ss_pred cccccCCCCccchhhhcCCCCCccchhhhhh--hhhhcccccccCCCchHHHHHHHHHHhhc--CCCeEEEEcCCcchHH
Q 001149 732 YNVVIGEKPRNMNDFLQGKNDDGFFQKDWWN--DLLHEHTYKELDYSGKMVLLLDILTMCSN--MGDKSLVFSQSIPTLD 807 (1138)
Q Consensus 732 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~--~g~KvLVFSq~~~~ld 807 (1138)
..... ...+.. ..+..........++|+..|.++|..... .+.|+|||+++..+++
T Consensus 344 ----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 403 (555)
T 3tbk_A 344 ----------TEREL----------TRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 403 (555)
T ss_dssp ----------HHHHH----------HHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHH
T ss_pred ----------HHHHH----------HHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHH
Confidence 00000 000000 00000001112347899999999987653 4689999999999999
Q ss_pred HHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCC
Q 001149 808 LIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 887 (1138)
Q Consensus 808 ~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~ 887 (1138)
.|..+|...............|..+..++|+++..+|++++++|++ ++.++ +||+|+++++|||+++++.||+||++
T Consensus 404 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~--~g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 404 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA--SGDNN-ILIATSVADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp HHHHHHHHCGGGTTCCEEECCC----------------------------CCS-EEEECCCTTCCEETTSCSEEEEESCC
T ss_pred HHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc--CCCee-EEEEcchhhcCCccccCCEEEEeCCC
Confidence 9999998742110011112346677788889999999999999997 24455 48899999999999999999999999
Q ss_pred CCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccc
Q 001149 888 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 941 (1138)
Q Consensus 888 WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~ 941 (1138)
|||..+.||+|| |+.+++.+|.|++.++.+++ +..+..|..+.+..+..
T Consensus 481 ~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~ 529 (555)
T 3tbk_A 481 GNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESILR 529 (555)
T ss_dssp SSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHHh
Confidence 999999999999 77799999999999999988 66777777777776654
No 12
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=100.00 E-value=5.4e-34 Score=274.08 Aligned_cols=116 Identities=28% Similarity=0.637 Sum_probs=110.7
Q ss_pred CCCceeeccCCCccc-----ccccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCcccccccccc
Q 001149 146 LSEKFYCTACNNVAI-----EVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCV 220 (1138)
Q Consensus 146 ~~~~~~C~~C~~~~~-----~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~ 220 (1138)
+.++|+||+||++++ .+++||+|+|++|+.|+++|.++.|.+|+||+++||+||++||+|+|||+|||+||+.||
T Consensus 5 ~~~~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl 84 (129)
T 3ql9_A 5 SMGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCI 84 (129)
T ss_dssp CCCSCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCCSEEEECSSSSCEEEHHHH
T ss_pred cCCceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecCCCCeeEecCCCchhhhHHHh
Confidence 467899999999974 688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccc-cCCCceeecCCcchHhHHHHHHHhhhcc
Q 001149 221 KRNISEACLSDEV-QASCWQCCCCSPSLLKRLTSELGRAMGS 261 (1138)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~W~C~~C~~~~~~~l~~~~~~~~~~ 261 (1138)
.+|+|++++.++. ++++|+||+|.|+|+++|+..|+++|+.
T Consensus 85 ~~~lg~~~l~~i~~~~~~W~C~~C~~~pl~~L~~~C~~v~~~ 126 (129)
T 3ql9_A 85 LRNLGRRELSTIMDENNQWYCYICHPEPLLDLVTACNSVYEN 126 (129)
T ss_dssp HHHTCHHHHHHHTCTTSCCCCTTTCCGGGHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHhccCCCCeEcCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999998775 7999999999999999999999999986
No 13
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=99.97 E-value=3.7e-34 Score=282.01 Aligned_cols=121 Identities=19% Similarity=0.440 Sum_probs=111.1
Q ss_pred ccccccccccccccccCCCCceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeec
Q 001149 129 PENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSC 208 (1138)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~C 208 (1138)
+|+|+.++..+ .++.+++||+||+. +.+++||+|+|++|+.|+++|.+++|.+|+||+++||+|||+||+|++|
T Consensus 21 r~~~~~~v~~~-----~~~~e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~Gg~l~~C 94 (159)
T 3a1b_A 21 RERLVYEVRQK-----CRNIEDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC 94 (159)
T ss_dssp HHHHHHHHHTT-----SSCGGGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTCBCTTSSBSSCTTTSCCSEEEEC
T ss_pred HHhhhHHHHhc-----cCCccCcccCCCCc-CccccCCCccchhhHHHHHHHhhcccccCCCCCcceeeEecCCCeEEee
Confidence 88888885444 45578999999997 4457999999999999999999999999999999999999999999999
Q ss_pred C--CccccccccccccCCCcccccccccCCCceeecCCcchHhHHHHHH
Q 001149 209 K--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSEL 255 (1138)
Q Consensus 209 d--~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~~~~ 255 (1138)
| +|+++||++||++|+|++++.++.++++|+||+|.|.|+++|++++
T Consensus 95 dn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~~ll~~R 143 (159)
T 3a1b_A 95 GNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRR 143 (159)
T ss_dssp SSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEETTEEBC
T ss_pred CCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccHHHHhhhh
Confidence 9 5999999999999999999999999999999999999999887654
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=8.7e-31 Score=317.74 Aligned_cols=349 Identities=13% Similarity=0.142 Sum_probs=244.1
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~ 459 (1138)
..|+|||.+++.+++.. .++||+++||+|||++++.++...+..+ .+++|||||. .|+.||.
T Consensus 112 ~~l~~~Q~~ai~~~~~~--------------~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~ 174 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN--------------RRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMA 174 (510)
T ss_dssp ECCCHHHHHHHHHHHHH--------------SEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc--------------CCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHH
Confidence 37999999999988642 5799999999999999988877766532 3499999996 6888999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++|.+|... ....+..+.+....... .....+|+|+||+.+.... ......+++||+|
T Consensus 175 ~~~~~~~~~--~~~~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~~~---------------~~~~~~~~liIiD 232 (510)
T 2oca_A 175 DDFVDYRLF--SHAMIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVKQP---------------KEWFSQFGMMMND 232 (510)
T ss_dssp HHHHHTTSS--CGGGEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTTSC---------------GGGGGGEEEEEEE
T ss_pred HHHHHhhcC--CccceEEEecCCccccc-----cccCCcEEEEeHHHHhhch---------------hhhhhcCCEEEEE
Confidence 999998432 12456665554322111 2246789999999765310 0112367999999
Q ss_pred CCcccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHH
Q 001149 540 EAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVK 618 (1138)
Q Consensus 540 EaH~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~ 618 (1138)
|+|++.+. ...+.+..+ .+.++++||||| .+...+++.+..++.+..+. .+....
T Consensus 233 E~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~----------~~~~~~----------- 288 (510)
T 2oca_A 233 ECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKP----------VTTSKL----------- 288 (510)
T ss_dssp TGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECC----------CCCC-------------
T ss_pred CCcCCCcc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEe----------eCHHHH-----------
Confidence 99999873 344555667 678999999999 56666677777666553211 000000
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHH
Q 001149 619 IMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALA 698 (1138)
Q Consensus 619 ~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~Lr 698 (1138)
+ -...+++.....+.+.+++....... + . .+.. .+.
T Consensus 289 ------------~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~------~---~---------~~~~---~~~ 324 (510)
T 2oca_A 289 ------------M-----------EDGQVTELKINSIFLRYPDEFTTKLK------G---K---------TYQE---EIK 324 (510)
T ss_dssp ------------------------------CCEEEEEEEECCHHHHHHHT------T---C---------CHHH---HHH
T ss_pred ------------h-----------hCCcCCCceEEEEeecCChHHhcccc------c---c---------chHH---HHH
Confidence 0 00146677777778888765431100 0 0 0000 000
Q ss_pred HHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCch
Q 001149 699 QIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGK 778 (1138)
Q Consensus 699 ki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~K 778 (1138)
.+. ....|
T Consensus 325 ~~~------------------------------------------------------------------------~~~~~ 332 (510)
T 2oca_A 325 IIT------------------------------------------------------------------------GLSKR 332 (510)
T ss_dssp HHH------------------------------------------------------------------------TCHHH
T ss_pred HHh------------------------------------------------------------------------ccHHH
Confidence 000 11235
Q ss_pred HHHHHHHHHHhhcC-CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 779 MVLLLDILTMCSNM-GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 779 l~~L~eiL~~~~~~-g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
...+.+++...... +.++|||+. +..++.|.+.|.. .|..+..++|+++..+|+++++.|++ +
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~------------~~~~v~~~~g~~~~~~r~~i~~~f~~---g 396 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN------------EYDKVYYVSGEVDTETRNIMKTLAEN---G 396 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT------------TCSSEEEESSSTTHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH------------cCCCeEEEECCCCHHHHHHHHHHHhC---C
Confidence 55666766665444 567778877 8888889999986 35689999999999999999999996 4
Q ss_pred CceEEEeec-cccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCC-cEEEEEEecCCCHHHHHH
Q 001149 858 RVKCTLIST-RAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK-PVFAYRLMAHGTMEEKIY 925 (1138)
Q Consensus 858 ~v~v~LiST-kaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k-~V~VyrLv~~gTiEekI~ 925 (1138)
.+. +|++| .++++|+|++.++.||+++++||+....|++||++|.|+.+ .|.||.++...++.++++
T Consensus 397 ~~~-vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 397 KGI-IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp CSC-EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred CCC-EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 455 46666 99999999999999999999999999999999999999997 899999998877666554
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.5e-29 Score=318.43 Aligned_cols=450 Identities=14% Similarity=0.110 Sum_probs=219.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc-CCCceEEEeCc-chHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPV-NVLHNW 458 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~-~~k~vLIV~P~-sll~qW 458 (1138)
..|+|||.+++.+++ .+.++|++++||+|||++++.++...+..... ..+++|||+|. .|+.||
T Consensus 12 ~~lr~~Q~~~i~~~l--------------~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 12 FKPRNYQLELALPAM--------------KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp -CCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHH
T ss_pred CCccHHHHHHHHHHH--------------cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHH
Confidence 468999999999884 24789999999999999999888776654321 12689999996 889999
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchh-HHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhh-hccCCCEE
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA-LQDGPDIL 536 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~-~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~-l~~~~dlV 536 (1138)
.+++.+|++. ..+.+..+.+.... ... ..+....+|+|+||+.+....... .+ ....|++|
T Consensus 78 ~~~~~~~~~~--~~~~v~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~L~~~l~~~------------~~~~l~~~~~v 140 (696)
T 2ykg_A 78 KSVFSKYFER--HGYRVTGISGATAENVPV---EQIVENNDIIILTPQILVNNLKKG------------TIPSLSIFTLM 140 (696)
T ss_dssp HHHHHHHTTT--TTCCEEEECSSSCSSSCH---HHHHHTCSEEEECHHHHHHHHHTT------------SSCCGGGCSEE
T ss_pred HHHHHHHhcc--CCceEEEEeCCccccccH---HHhccCCCEEEECHHHHHHHHhcC------------cccccccccEE
Confidence 9999999864 23667666664321 111 112246799999999986432110 01 12378999
Q ss_pred EEcCCcccCCcccHHHHHHHhc---------ccCeEEEEecCCCCCCh-------hHHHHHhhhhccCCC---C-ChHHH
Q 001149 537 VCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNL-------MEYYCMVDFVREGFL---G-SSHEF 596 (1138)
Q Consensus 537 IlDEaH~iKN~~S~~skal~~l---------~~~~RllLTGTPlqNnl-------~El~~ll~fL~p~~l---g-~~~eF 596 (1138)
|+||||++.+..+........+ ...++++|||||..++. .+++.++..+....+ . ...+.
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l 220 (696)
T 2ykg_A 141 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEEL 220 (696)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHH
T ss_pred EEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHH
Confidence 9999999997764332221111 45789999999996543 444444444443322 1 22233
Q ss_pred HhhccCCcccCCC--CCCChHHHHHHHHHHHHHHHHHhHH-----------------------HhhhhhhhhhhcCCCCe
Q 001149 597 RNRFQNPIENGQH--TNSTSEDVKIMNQRSHILYEQLKGF-----------------------VQRMDMNVVKKDLPPKT 651 (1138)
Q Consensus 597 ~~~f~~pi~~g~~--~~s~~~~~~~~~~r~~~L~~~L~~~-----------------------v~Rr~~~~v~~~LP~k~ 651 (1138)
......|...... ......-...+..-...+..+...+ +.+..+......+|.+.
T Consensus 221 ~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (696)
T 2ykg_A 221 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 300 (696)
T ss_dssp HHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------C
T ss_pred HhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccch
Confidence 3333333211000 0001000011110000011111111 11111111111122111
Q ss_pred EEEEEecCCHHHHHHHHHHHHhhccccc--ccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccc
Q 001149 652 VFVITVKLSPLQRRLYKRFLDLHGFTND--RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDEN 729 (1138)
Q Consensus 652 e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~--~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~ 729 (1138)
+ +..++..+......... ....-.........+..+........- .... .
T Consensus 301 ~----------~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~------~~~~------------~ 352 (696)
T 2ykg_A 301 E----------ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA------AGFD------------E 352 (696)
T ss_dssp C----------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT------TCCC------------H
T ss_pred h----------hhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhh------cccc------------h
Confidence 1 11111111000000000 000000000111222222222211000 0000 0
Q ss_pred cccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhh--cCCCeEEEEcCCcchHH
Q 001149 730 MDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLD 807 (1138)
Q Consensus 730 ~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KvLVFSq~~~~ld 807 (1138)
.. ..+... + ......+ ..........+.|+..|.++|.... ..+.++|||+++..+++
T Consensus 353 ~~------------~~~~~~------~-~~~~~~l-~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~ 412 (696)
T 2ykg_A 353 IE------------QDLTQR------F-EEKLQEL-ESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 412 (696)
T ss_dssp HH------------HHHHHH------H-HTTHHHH-HHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHH
T ss_pred HH------------HHHHHH------H-HHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHH
Confidence 00 000000 0 0000000 0000011124789999999998763 35789999999999999
Q ss_pred HHHHHHhhCCCCCCCcccccCCceEEEE--------eCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCC
Q 001149 808 LIEFYLSKLPRPGKQGKLWKKGKDWYRL--------DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSAN 879 (1138)
Q Consensus 808 ~Le~~L~~l~~~~~~~~~~~~Gi~~~rl--------dGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An 879 (1138)
.|..+|...+. ..++.+..+ +|+++..+|++++++|++ ++.++ +||+|.++++|||+++++
T Consensus 413 ~l~~~L~~~~~--------~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~--~g~~~-vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 413 ALKNWIEGNPK--------LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA--SGDHN-ILIATSVADEGIDIAQCN 481 (696)
T ss_dssp HHHHHHHHCTT--------CCSCCEEC-------------------------------CCS-CSEEEESSCCC---CCCS
T ss_pred HHHHHHHhCCC--------ccccceeEEEccCCCccccCCCHHHHHHHHHHHHh--cCCcc-EEEEechhhcCCcCccCC
Confidence 99999997321 012667777 459999999999999986 13444 489999999999999999
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHH
Q 001149 880 RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKI 924 (1138)
Q Consensus 880 ~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI 924 (1138)
.||+||++||+..+.|++|| +|. ++..+|.|+..+++++.-
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp EEEEESCC--CCCC-------------CCCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHHH
Confidence 99999999999999999999 884 677889999998886643
No 16
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=99.97 E-value=1e-31 Score=262.89 Aligned_cols=120 Identities=28% Similarity=0.627 Sum_probs=112.5
Q ss_pred ccCCCCceeeccCCCccc-----ccccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCccccccc
Q 001149 143 SQSLSEKFYCTACNNVAI-----EVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCT 217 (1138)
Q Consensus 143 ~~~~~~~~~C~~C~~~~~-----~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~ 217 (1138)
...+.++++||+||+.++ .++.||+|+|++|+.|+.+|+++.|.+|+||+++||+||++||+|+|||+|||+||+
T Consensus 8 ~~~~~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~ 87 (142)
T 2lbm_A 8 GDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCK 87 (142)
T ss_dssp SSSCCCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCSSEEECSSSCCEEEH
T ss_pred ccCCcCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCCCcEEeCCCCCCeeeH
Confidence 355678899999999874 578999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccc-ccCCCceeecCCcchHhHHHHHHHhhhccc
Q 001149 218 TCVKRNISEACLSDE-VQASCWQCCCCSPSLLKRLTSELGRAMGSE 262 (1138)
Q Consensus 218 ~C~~~~~~~~~~~~~-~~~~~W~C~~C~~~~~~~l~~~~~~~~~~~ 262 (1138)
.||.+++|++.+.++ .++++|+||+|.|.|+++|++.|+++|+.-
T Consensus 88 ~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~~~~~~~ 133 (142)
T 2lbm_A 88 KCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFENL 133 (142)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHHHHHHHH
T ss_pred hhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHHHHHHHH
Confidence 999999999999876 589999999999999999999999999873
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=6.1e-30 Score=322.09 Aligned_cols=469 Identities=14% Similarity=0.150 Sum_probs=249.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhccc--CCCceEEEeCcc-hHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPVN-VLHN 457 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~--~~k~vLIV~P~s-ll~q 457 (1138)
..|+|||.+++.+++ .+.++|++++||+|||++++.++..++..... ..+++|||+|.. |+.|
T Consensus 6 ~~l~~~Q~~~i~~il--------------~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q 71 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL--------------EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ 71 (699)
T ss_dssp -CCCHHHHHHHHHHH--------------SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHH
T ss_pred CCccHHHHHHHHHHH--------------hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHH
Confidence 469999999999985 24789999999999999999988776654321 126899999965 8889
Q ss_pred H-HHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEE
Q 001149 458 W-KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 536 (1138)
Q Consensus 458 W-~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlV 536 (1138)
| .++|.+|++.. +.+..+++...... ....+....+|+|+|++.+......... .....+....|++|
T Consensus 72 ~~~~~l~~~~~~~---~~v~~~~g~~~~~~--~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~------~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 72 LFRKEFQPFLKKW---YRVIGLSGDTQLKI--SFPEVVKSCDIIISTAQILENSLLNLEN------GEDAGVQLSDFSLI 140 (699)
T ss_dssp HHHHTHHHHHTTT---SCEEEEC----CCC--CHHHHHHSCSEEEEEHHHHHHHTC--------------CCCGGGCSEE
T ss_pred HHHHHHHHHcCcC---ceEEEEeCCcchhh--HHHhhhcCCCEEEECHHHHHHHHhcccc------ccccceecccCcEE
Confidence 9 99999999862 56666666432211 1122336789999999998643211100 00011222379999
Q ss_pred EEcCCcccCCccc--HH-HHHHHh-c-------------ccCeEEEEecCCCCCCh-------hHHHHHhhhhccCCC--
Q 001149 537 VCDEAHMIKNTRA--DT-TQALKQ-V-------------KCQRRIALTGSPLQNNL-------MEYYCMVDFVREGFL-- 590 (1138)
Q Consensus 537 IlDEaH~iKN~~S--~~-skal~~-l-------------~~~~RllLTGTPlqNnl-------~El~~ll~fL~p~~l-- 590 (1138)
|+||||++.+... .+ ...+.. + ...++++|||||..++. .++..++..+.+..+
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~ 220 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKT 220 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCC
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEe
Confidence 9999999854321 11 111211 1 44679999999998743 334444555555222
Q ss_pred --CChHHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHH
Q 001149 591 --GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYK 668 (1138)
Q Consensus 591 --g~~~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~ 668 (1138)
.....+...+..|............+ ........+...+..++ ++.+... +. ...|.
T Consensus 221 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~--~~~~~l~~l~~~i~~~~----------~~~~~~~------~g---~~~~~ 279 (699)
T 4gl2_A 221 VKENLDQLKNQIQEPCKKFAIADATRED--PFKEKLLEIMTRIQTYC----------QMSPMSD------FG---TQPYE 279 (699)
T ss_dssp CCTTHHHHHHHSCCCEEEEEEEC-------CHHHHHHHHHHHHHHHH----------TCCCCSC------SS---SHHHH
T ss_pred ecCchHHHhhhcCCCceEEEEcccccCC--hHHHHHHHHHHHHHHHh----------ccCcchh------cc---chHHH
Confidence 12234444444443221111100000 00000111111111111 1111000 01 11122
Q ss_pred HHHHhh---c----ccccccchHHHH-----------hhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCcccc
Q 001149 669 RFLDLH---G----FTNDRVSNEKIR-----------KSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENM 730 (1138)
Q Consensus 669 ~~l~~~---~----~~~~~~~~~~~~-----------~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~ 730 (1138)
.++... . ............ ......+..++........ ... ...+...... ...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~-~~~~~~~~~~--~~~ 351 (699)
T 4gl2_A 280 QWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKD-----KKF-AVIEDDLKKP--LKL 351 (699)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-----HHC---------------C
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhc-cccccccccc--ccc
Confidence 211100 0 000000000000 0000111111111110000 000 0000000000 000
Q ss_pred ccccccCCCCccchhhhcCCCCCccchhhhhhhhhh-------cccccccCCCchHHHHHHHHHHhhc--C-CCeEEEEc
Q 001149 731 DYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLH-------EHTYKELDYSGKMVLLLDILTMCSN--M-GDKSLVFS 800 (1138)
Q Consensus 731 d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~S~Kl~~L~eiL~~~~~--~-g~KvLVFS 800 (1138)
.....+...+.. .........++|+..|.++|..... . +.++|||+
T Consensus 352 ------------------------~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~ 407 (699)
T 4gl2_A 352 ------------------------DETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFT 407 (699)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEEC
T ss_pred ------------------------chhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 000001111110 0001111246788888888876433 2 78999999
Q ss_pred CCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCC--------CCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 801 QSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGR--------TESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 801 q~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGs--------ts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
++..+++.|.++|.... .+-..|+.+..++|+ ++..+|.+++++|++ +.++ +||+|.++++|
T Consensus 408 ~s~~~~~~l~~~L~~~~------~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~---g~~~-VLVaT~~~~~G 477 (699)
T 4gl2_A 408 KTRQSAYALSQWITENE------KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT---GKIN-LLIATTVAEEG 477 (699)
T ss_dssp SCHHHHHHHHHHHHSSC------SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC------C-CSEEECSCCTT
T ss_pred CcHHHHHHHHHHHHhCc------cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc---CCCc-EEEEccccccC
Confidence 99999999999998631 011137899999999 999999999999997 3444 58899999999
Q ss_pred CCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHccc
Q 001149 873 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 941 (1138)
Q Consensus 873 LNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq~~K~~l~~~vvd~ 941 (1138)
||+++++.||+||++|||..+.|++||+.|-| ..++.+...++.+...+.....+..++...+..
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAIHC 542 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999975544 344445666776666655566666666666543
No 18
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.96 E-value=3.6e-30 Score=286.91 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=155.3
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHhhcccc------cccchHHHHhhHHHHHHHHHHHhcCcccccccccc-CCCCCc
Q 001149 647 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTN------DRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK-GYPSRE 719 (1138)
Q Consensus 647 LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~------~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~-~~~~~e 719 (1138)
-|++.|++++++||+.|+++|+.++....... ..........++...++.||++||||+|+...... ...
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~--- 96 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLI--- 96 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSC---
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcccc---
Confidence 49999999999999999999999985321110 11011122345677889999999999998411100 000
Q ss_pred cccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEEE
Q 001149 720 DAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVF 799 (1138)
Q Consensus 720 ~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVF 799 (1138)
.. ......++.|||+.+|..+|..+.+.|+|||||
T Consensus 97 ---------------------------------~~------------~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIf 131 (328)
T 3hgt_A 97 ---------------------------------TR------------DVPAHLAENSGKFSVLRDLINLVQEYETETAIV 131 (328)
T ss_dssp ---------------------------------ST------------THHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred ---------------------------------cc------------chhhHHHHcCccHHHHHHHHHHHHhCCCEEEEE
Confidence 00 000112357999999999999999999999999
Q ss_pred cCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCC-----
Q 001149 800 SQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN----- 874 (1138)
Q Consensus 800 Sq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLN----- 874 (1138)
||++.++|+||++|.. +|+.|.|+||++... +++. .+..+.+||+ |++||.|+|
T Consensus 132 sq~t~~LDilE~~l~~------------~~~~y~RlDG~~~~~-~~k~-------~~~~~~i~Ll-tsag~~gin~~~~n 190 (328)
T 3hgt_A 132 CRPGRTMDLLEALLLG------------NKVHIKRYDGHSIKS-AAAA-------NDFSCTVHLF-SSEGINFTKYPIKS 190 (328)
T ss_dssp ECSTHHHHHHHHHHTT------------SSCEEEESSSCCC---------------CCSEEEEEE-ESSCCCTTTSCCCC
T ss_pred ECChhHHHHHHHHHhc------------CCCceEeCCCCchhh-hhhc-------ccCCceEEEE-ECCCCCCcCccccc
Confidence 9999999999999985 699999999996543 2221 1345677877 568888886
Q ss_pred cccCCEEEEEcCCCCcchH-HHHHHHHHhh--CCCCcEEEEEEecCCCHHHHHHHH
Q 001149 875 LHSANRVIIVDGSWNPTYD-LQAIYRAWRY--GQTKPVFAYRLMAHGTMEEKIYKR 927 (1138)
Q Consensus 875 Lt~An~VIi~D~~WNP~~~-~QAigR~~Ri--GQ~k~V~VyrLv~~gTiEekI~~r 927 (1138)
|++||+||+||++|||..+ .||+.|+||+ ||+|+|.||||++.+|+|+.++..
T Consensus 191 l~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 191 KARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 8999999999999999998 9999999999 789999999999999999999876
No 19
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=7.1e-29 Score=306.46 Aligned_cols=368 Identities=15% Similarity=0.133 Sum_probs=215.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc-----ccCCCceEEEeC-cc
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV-----NLGLRTALIVTP-VN 453 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~-----~~~~k~vLIV~P-~s 453 (1138)
...|+|||.+++.++++.+. ....+++|+++||+|||++++.++..++..+ ....+++||||| ..
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~---------~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~ 246 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVL---------QGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNV 246 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHH---------TTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---
T ss_pred CCCchHHHHHHHHHHHHHHh---------cCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHH
Confidence 46799999999999987653 2335689999999999999999988887654 113579999999 67
Q ss_pred hHHHHH-HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccC
Q 001149 454 VLHNWK-QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 532 (1138)
Q Consensus 454 ll~qW~-~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~ 532 (1138)
|+.||. ++|..|.+. . ..+.+. ......+|+|+||+.+......... +..+....
T Consensus 247 L~~Q~~~~~~~~~~~~----~--~~~~~~----------~~~~~~~I~v~T~~~l~~~~~~~~~--------~~~~~~~~ 302 (590)
T 3h1t_A 247 LVDDPKDKTFTPFGDA----R--HKIEGG----------KVVKSREIYFAIYQSIASDERRPGL--------YKEFPQDF 302 (590)
T ss_dssp --------CCTTTCSS----E--EECCC------------CCSSCSEEEEEGGGC------CCG--------GGGSCTTS
T ss_pred HHHHHHHHHHHhcchh----h--hhhhcc----------CCCCCCcEEEEEhhhhccccccccc--------cccCCCCc
Confidence 889999 888877542 2 222221 1224678999999998653210000 11122347
Q ss_pred CCEEEEcCCcccCCcc-cHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 001149 533 PDILVCDEAHMIKNTR-ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 611 (1138)
Q Consensus 533 ~dlVIlDEaH~iKN~~-S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~ 611 (1138)
|++||+||||++.+.. +.....+..+...++++|||||..+...+++.++. .++....
T Consensus 303 ~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~--- 361 (590)
T 3h1t_A 303 FDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS--- 361 (590)
T ss_dssp CSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---
T ss_pred cCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---
Confidence 9999999999998753 34455666778889999999999887666554431 1211100
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 001149 612 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 691 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l 691 (1138)
+.+.+. ...+++.....+................+...
T Consensus 362 ---------------~~~~i~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 399 (590)
T 3h1t_A 362 ---------------LRQGID-----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFG---------------- 399 (590)
T ss_dssp ---------------HHHHHH-----------HTSSCCEEEEEEEETTCC------------------------------
T ss_pred ---------------HHHHhh-----------CCccCCcEEEEeeeeeeccccccccccccccc----------------
Confidence 011111 01244444444444332211110000000000
Q ss_pred HHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhccccc
Q 001149 692 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 771 (1138)
Q Consensus 692 ~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~ 771 (1138)
..+ .+..+ ........
T Consensus 400 -------------~~~---~~~~~------------------------------------~~~~~~~~------------ 415 (590)
T 3h1t_A 400 -------------REI---PDGEY------------------------------------QTKDFERV------------ 415 (590)
T ss_dssp -------------------------------------------------------------CCSHHHH------------
T ss_pred -------------ccc---ccccC------------------------------------CHHHhhhH------------
Confidence 000 00000 00000000
Q ss_pred ccCCCchHHHHHHH----HHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHH
Q 001149 772 ELDYSGKMVLLLDI----LTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL 847 (1138)
Q Consensus 772 ~~~~S~Kl~~L~ei----L~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~ 847 (1138)
+....+...+.+. +... ..+.|+|||+++..+++.|...|....... .-..+..+..++|+++ ++|+.+
T Consensus 416 -~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~----~~~~~~~~~~i~g~~~-~~r~~~ 488 (590)
T 3h1t_A 416 -IALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDL----SRKHPDYVARVTSEEG-KIGKGH 488 (590)
T ss_dssp -HHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHH----HTTCTTSEEECSSTTH-HHHHHH
T ss_pred -hcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhh----hccCCCeEEEEeCCCh-HHHHHH
Confidence 0011233333333 3332 456899999999999999999998632100 0001233678999986 369999
Q ss_pred HHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCC---CCcEEEEEEe
Q 001149 848 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQ---TKPVFAYRLM 915 (1138)
Q Consensus 848 i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ---~k~V~VyrLv 915 (1138)
+++|+++. ..+.++|+||+++++|||++.++.||+++++||+..+.|++||++|.|+ +..+.||.|+
T Consensus 489 l~~F~~~~-~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 489 LSRFQELE-TSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHCTT-CCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHhCCC-CCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999753 3356789999999999999999999999999999999999999999995 5778999987
No 20
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.96 E-value=1.1e-30 Score=293.91 Aligned_cols=126 Identities=21% Similarity=0.448 Sum_probs=112.0
Q ss_pred ccCCCCCccccccccccccccccCCCCceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCCCcccccccCC
Q 001149 122 LEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGR 201 (1138)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~ 201 (1138)
.++..+++++|++++..+ .++.+++||+||+. ..+++||+|+|++|+.|+.+|++++|.+|+||+++||+|||+
T Consensus 28 ~~~~~~~~~~~~~~~~~~-----~~~~e~~C~~CG~~-~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~ 101 (386)
T 2pv0_B 28 SVSPGTGRDLIAYEVKAN-----QRNIEDICICCGSL-QVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCS 101 (386)
T ss_dssp ------CHHHHHHHHHSS-----CCCGGGSBTTTCCS-CCCSBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCC
T ss_pred CCCCCccHHHHHHHHHhc-----cCcccceeCCCCCc-CccccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCC
Confidence 567789999999996544 45566999999998 557799999999999999999999999999999999999999
Q ss_pred CCceeecC--CccccccccccccCCCcccccccccCCCceeecCCcchHhHHHH
Q 001149 202 SSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTS 253 (1138)
Q Consensus 202 gg~l~~Cd--~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~~ 253 (1138)
||+|+||| +|+|+||+.||++|+|++++.++.+.++|+||+|.|.|+++|++
T Consensus 102 Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll~ 155 (386)
T 2pv0_B 102 GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQ 155 (386)
T ss_dssp CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTEE
T ss_pred CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhhh
Confidence 99999999 79999999999999999999999999999999999999988874
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=1.6e-26 Score=269.50 Aligned_cols=318 Identities=14% Similarity=0.146 Sum_probs=216.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.|+|||.+++.++. .+.++|++++||+|||++++..+...+... .+..++|||||. .|+.||.+
T Consensus 30 ~~~~~Q~~~i~~~~--------------~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~~q~~~ 94 (391)
T 1xti_A 30 HPSEVQHECIPQAI--------------LGMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTRELAFQISK 94 (391)
T ss_dssp SCCHHHHHHHHHHT--------------TTCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------cCCcEEEECCCCCcHHHHHHHHHHHhhccc-CCCeeEEEECCCHHHHHHHHH
Confidence 48999999998873 357899999999999998877776554322 224589999997 68889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhH-HHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~-r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++.+|.... ..+.+..+.+..... ....+. ....+|+|+|++.+..+.... ......+++||+|
T Consensus 95 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~--~~~~~iiv~T~~~l~~~~~~~------------~~~~~~~~~vViD 159 (391)
T 1xti_A 95 EYERFSKYM-PNVKVAVFFGGLSIKKDEEVLK--KNCPHIVVGTPGRILALARNK------------SLNLKHIKHFILD 159 (391)
T ss_dssp HHHHHTTTC-TTCCEEEECTTSCHHHHHHHHH--HSCCSEEEECHHHHHHHHHTT------------SSCCTTCSEEEEC
T ss_pred HHHHHHhhC-CCeEEEEEeCCCCHHHHHHHHh--cCCCCEEEECHHHHHHHHHcC------------CccccccCEEEEe
Confidence 999997532 136666666644322 222221 134689999999886432110 1112378999999
Q ss_pred CCcccCCcccH---HHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChH
Q 001149 540 EAHMIKNTRAD---TTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 615 (1138)
Q Consensus 540 EaH~iKN~~S~---~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~ 615 (1138)
|||++.+.... ....+..+ ...+.++|||||-.+ ..+
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~-------------------------------------- 200 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE-IRP-------------------------------------- 200 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCST-HHH--------------------------------------
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHH-HHH--------------------------------------
Confidence 99999764221 12222223 356789999997421 000
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHH
Q 001149 616 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 695 (1138)
Q Consensus 616 ~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 695 (1138)
.+..++ .... .+.+.-. ..
T Consensus 201 --------------~~~~~~------------~~~~--~~~~~~~------------------~~--------------- 219 (391)
T 1xti_A 201 --------------VCRKFM------------QDPM--EIFVDDE------------------TK--------------- 219 (391)
T ss_dssp --------------HHHHHC------------SSCE--EEECCCC------------------CC---------------
T ss_pred --------------HHHHHc------------CCCe--EEEecCc------------------cc---------------
Confidence 000000 0000 0000000 00
Q ss_pred HHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCC
Q 001149 696 ALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDY 775 (1138)
Q Consensus 696 ~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 775 (1138)
+. .. .. ...+.....
T Consensus 220 --------~~---------~~-------------------------~~-----------------------~~~~~~~~~ 234 (391)
T 1xti_A 220 --------LT---------LH-------------------------GL-----------------------QQYYVKLKD 234 (391)
T ss_dssp --------CC---------CT-------------------------TC-----------------------EEEEEECCG
T ss_pred --------cC---------cc-------------------------cc-----------------------eEEEEEcCc
Confidence 00 00 00 000001122
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|...+.+++... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 235 ~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~~- 299 (391)
T 1xti_A 235 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVE------------QNFPAIAIHRGMPQEERLSRYQQFKDF- 299 (391)
T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHh------------CCCcEEEEeCCCCHHHHHHHHHHHhcC-
Confidence 45777888888764 578999999999999999999987 588899999999999999999999963
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
..+ +|++|.++++|+|+++++.||+||++|++..+.|++||++|.|+...+++|
T Consensus 300 --~~~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 353 (391)
T 1xti_A 300 --QRR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353 (391)
T ss_dssp --CCS-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE
T ss_pred --CCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 333 689999999999999999999999999999999999999999987666554
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=9.7e-27 Score=268.30 Aligned_cols=315 Identities=18% Similarity=0.190 Sum_probs=216.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.|+|||.+++.++++ .+.++|++.+||+|||++++..+...+... ...++|||||. .++.||.+
T Consensus 28 ~~~~~Q~~~i~~~~~-------------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~ 92 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN-------------DEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELAIQVAD 92 (367)
T ss_dssp SCCHHHHHHHHHHHH-------------TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------CCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHHHHHHHH
Confidence 589999999988853 235789999999999999887776654432 24689999996 57789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++++.. .+.+....+....... ...+ ...+|+|+|++.+...... .......+++||+||
T Consensus 93 ~~~~~~~~~--~~~v~~~~~~~~~~~~--~~~~-~~~~iiv~T~~~l~~~~~~------------~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 93 EIESLKGNK--NLKIAKIYGGKAIYPQ--IKAL-KNANIVVGTPGRILDHINR------------GTLNLKNVKYFILDE 155 (367)
T ss_dssp HHHHHHCSS--CCCEEEECTTSCHHHH--HHHH-HTCSEEEECHHHHHHHHHT------------TCSCTTSCCEEEEET
T ss_pred HHHHHhCCC--CceEEEEECCcchHHH--Hhhc-CCCCEEEecHHHHHHHHHc------------CCcccccCCEEEEeC
Confidence 999998642 3556655554332211 1122 3678999999987542111 011123789999999
Q ss_pred CcccCCcc--cHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 541 AHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 541 aH~iKN~~--S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||.+.+.. ......+..+ ...+.++|||||-.+ +..
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~----~~~------------------------------------- 194 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACNKDKRILLFSATMPRE----ILN------------------------------------- 194 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHH----HHH-------------------------------------
T ss_pred chHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHH----HHH-------------------------------------
Confidence 99987654 2333344444 567789999998321 000
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
.+..++ .. ...+...... .
T Consensus 195 ------------~~~~~~------------~~--~~~~~~~~~~------------------~----------------- 213 (367)
T 1hv8_A 195 ------------LAKKYM------------GD--YSFIKAKINA------------------N----------------- 213 (367)
T ss_dssp ------------HHHHHC------------CS--EEEEECCSSS------------------S-----------------
T ss_pred ------------HHHHHc------------CC--CeEEEecCCC------------------C-----------------
Confidence 000000 00 0000000000 0
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
+ ...+.......
T Consensus 214 --------~------------------------------------------------------------~~~~~~~~~~~ 225 (367)
T 1hv8_A 214 --------I------------------------------------------------------------EQSYVEVNENE 225 (367)
T ss_dssp --------S------------------------------------------------------------EEEEEECCGGG
T ss_pred --------c------------------------------------------------------------eEEEEEeChHH
Confidence 0 00000011234
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|+..+.+++. ..+.++|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 226 ~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~~--- 287 (367)
T 1hv8_A 226 RFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRD------------IGFKAGAIHGDLSQSQREKVIRLFKQK--- 287 (367)
T ss_dssp HHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHH------------TTCCEEEECSSSCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHh------------cCCCeEEeeCCCCHHHHHHHHHHHHcC---
Confidence 6666666665 5678999999999999999999987 578899999999999999999999963
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
..+ +|++|.++++|+|+++++.||+++++||+..+.|++||++|.|+...+++ |+....
T Consensus 288 ~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~ 346 (367)
T 1hv8_A 288 KIR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRRE 346 (367)
T ss_dssp SSS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTS
T ss_pred CCe-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcHHH
Confidence 344 58899999999999999999999999999999999999999998776554 455543
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1.1e-26 Score=264.73 Aligned_cols=315 Identities=16% Similarity=0.157 Sum_probs=206.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.|+|||.+++.++. .+.++++..+||+|||++++..+... .+++|||+|. .++.||.+
T Consensus 16 ~l~~~Q~~~i~~i~--------------~~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 16 NFTEVQSKTIPLML--------------QGKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------cCCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHHHH
Confidence 48999999999874 24689999999999999877766442 3589999996 67889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.+|.+.. .+.+..+.+...... ....+ ...+|+|+|++.+....... ......+++||+||
T Consensus 75 ~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~-~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~iViDE 137 (337)
T 2z0m_A 75 HIRDIGRYM--DTKVAEVYGGMPYKA--QINRV-RNADIVVATPGRLLDLWSKG------------VIDLSSFEIVIIDE 137 (337)
T ss_dssp HHHHHTTTS--CCCEEEECTTSCHHH--HHHHH-TTCSEEEECHHHHHHHHHTT------------SCCGGGCSEEEEES
T ss_pred HHHHHhhhc--CCcEEEEECCcchHH--HHhhc-CCCCEEEECHHHHHHHHHcC------------CcchhhCcEEEEEC
Confidence 999997542 245555555432221 12223 34789999999876431110 11123789999999
Q ss_pred CcccCCcc--cHHHHHHHhcc-cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 541 AHMIKNTR--ADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 541 aH~iKN~~--S~~skal~~l~-~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||++.+.. ......+..+. ....+++||||-. ++..
T Consensus 138 ah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~----~~~~------------------------------------- 176 (337)
T 2z0m_A 138 ADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPE----EIRK------------------------------------- 176 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCH----HHHH-------------------------------------
T ss_pred hHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCH----HHHH-------------------------------------
Confidence 99986433 23333444444 3455678999821 1000
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
.+..++ ..... +.... .
T Consensus 177 ------------~~~~~~------------~~~~~--~~~~~----------------------~--------------- 193 (337)
T 2z0m_A 177 ------------VVKDFI------------TNYEE--IEACI----------------------G--------------- 193 (337)
T ss_dssp ------------HHHHHS------------CSCEE--EECSG----------------------G---------------
T ss_pred ------------HHHHhc------------CCcee--eeccc----------------------c---------------
Confidence 010000 00000 00000 0
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
.+.+... +... ..
T Consensus 194 -----~~~~~~~------------------------------------------------------------~~~~--~~ 206 (337)
T 2z0m_A 194 -----LANVEHK------------------------------------------------------------FVHV--KD 206 (337)
T ss_dssp -----GGGEEEE------------------------------------------------------------EEEC--SS
T ss_pred -----cCCceEE------------------------------------------------------------EEEe--Ch
Confidence 0000000 0000 00
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
+.....+.+.. ..+.++|||+++...++.+...|. .+..++|+++..+|.+++++|+++
T Consensus 207 ~~~~~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~----------------~~~~~~~~~~~~~r~~~~~~f~~~--- 265 (337)
T 2z0m_A 207 DWRSKVQALRE--NKDKGVIVFVRTRNRVAKLVRLFD----------------NAIELRGDLPQSVRNRNIDAFREG--- 265 (337)
T ss_dssp SSHHHHHHHHT--CCCSSEEEECSCHHHHHHHHTTCT----------------TEEEECTTSCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHh--CCCCcEEEEEcCHHHHHHHHHHhh----------------hhhhhcCCCCHHHHHHHHHHHHcC---
Confidence 00011122222 457899999999999988887665 367899999999999999999963
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHHH
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 928 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~rq 928 (1138)
.++ +|++|.++++|+|+++++.||+|+++|++..+.|++||++|.|+...+++|.. .+..+.++|.+..
T Consensus 266 ~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 266 EYD-MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp SCS-EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred CCc-EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 344 58899999999999999999999999999999999999999999988888876 5556666665544
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=5.9e-26 Score=265.90 Aligned_cols=317 Identities=17% Similarity=0.184 Sum_probs=215.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.|+|||.+++.+++. +.++|+..+||+|||++++..+...+.... ...++|||||. .++.||.+
T Consensus 43 ~~~~~Q~~~i~~i~~--------------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~ 107 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT--------------GRDILARAKNGTGKTAAFVIPTLEKVKPKL-NKIQALIMVPTRELALQTSQ 107 (400)
T ss_dssp SCCHHHHHHHHHHHH--------------TCCEEEECCTTSCHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--------------CCCEEEECCCCcHHHHHHHHHHHHHHhhcc-CCccEEEEcCCHHHHHHHHH
Confidence 589999999998853 367999999999999988777765543321 23579999997 57789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.+.. .+.+..+.+...... .........+|+|+|++.+....... ......+++||+||
T Consensus 108 ~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~Ivv~T~~~l~~~~~~~------------~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 108 VVRTLGKHC--GISCMVTTGGTNLRD--DILRLNETVHILVGTPGRVLDLASRK------------VADLSDCSLFIMDE 171 (400)
T ss_dssp HHHHHTTTT--TCCEEEECSSSCHHH--HHHHTTSCCSEEEECHHHHHHHHHTT------------CSCCTTCCEEEEES
T ss_pred HHHHHhccc--CceEEEEeCCcchHH--HHHHhcCCCCEEEEchHHHHHHHHhC------------CcccccCCEEEEeC
Confidence 999998642 355555555443221 11223356789999999875421100 01123789999999
Q ss_pred CcccCCcccHHHHHHHh----c-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChH
Q 001149 541 AHMIKNTRADTTQALKQ----V-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 615 (1138)
Q Consensus 541 aH~iKN~~S~~skal~~----l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~ 615 (1138)
||++.+.. ....+.. + ...+.++||||+-. ++
T Consensus 172 aH~~~~~~--~~~~~~~i~~~~~~~~~~i~lSAT~~~----~~------------------------------------- 208 (400)
T 1s2m_A 172 ADKMLSRD--FKTIIEQILSFLPPTHQSLLFSATFPL----TV------------------------------------- 208 (400)
T ss_dssp HHHHSSHH--HHHHHHHHHTTSCSSCEEEEEESCCCH----HH-------------------------------------
T ss_pred chHhhhhc--hHHHHHHHHHhCCcCceEEEEEecCCH----HH-------------------------------------
Confidence 99886543 2222322 2 35678999999621 00
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHH
Q 001149 616 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 695 (1138)
Q Consensus 616 ~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 695 (1138)
...+..+ +..... +.... ...
T Consensus 209 ------------~~~~~~~------------~~~~~~----~~~~~------------------~~~------------- 229 (400)
T 1s2m_A 209 ------------KEFMVKH------------LHKPYE----INLME------------------ELT------------- 229 (400)
T ss_dssp ------------HHHHHHH------------CSSCEE----ESCCS------------------SCB-------------
T ss_pred ------------HHHHHHH------------cCCCeE----EEecc------------------ccc-------------
Confidence 0000000 000000 00000 000
Q ss_pred HHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCC
Q 001149 696 ALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDY 775 (1138)
Q Consensus 696 ~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 775 (1138)
.+.+ ...+.....
T Consensus 230 -------~~~~------------------------------------------------------------~~~~~~~~~ 242 (400)
T 1s2m_A 230 -------LKGI------------------------------------------------------------TQYYAFVEE 242 (400)
T ss_dssp -------CTTE------------------------------------------------------------EEEEEECCG
T ss_pred -------cCCc------------------------------------------------------------eeEEEEech
Confidence 0000 000011122
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+..+..++... .+.++|||+++...++.+...|.. .|+.+..++|.++..+|..+++.|+++
T Consensus 243 ~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~g- 307 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITD------------LGYSCYYSHARMKQQERNKVFHEFRQG- 307 (400)
T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHH------------HTCCEEEECTTSCHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHh------------cCCCeEEecCCCCHHHHHHHHHHHhcC-
Confidence 45777777777763 567999999999999999999986 478899999999999999999999863
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
.++ +|++|.++++|+|+++++.||+||++||+..+.|++||++|.|+... +|.|+..+
T Consensus 308 --~~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~ 365 (400)
T 1s2m_A 308 --KVR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN 365 (400)
T ss_dssp --SSS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG
T ss_pred --CCc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccc
Confidence 344 58899999999999999999999999999999999999999997644 45556554
No 25
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.94 E-value=5.5e-26 Score=267.24 Aligned_cols=321 Identities=16% Similarity=0.139 Sum_probs=215.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++.+++ .+..+|++.+||+|||++++..+...+... ....++|||||. .|+.||.+
T Consensus 59 ~~~~~Q~~ai~~i~--------------~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 123 (410)
T 2j0s_A 59 KPSAIQQRAIKQII--------------KGRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELAVQIQK 123 (410)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEcCcHHHHHHHHH
Confidence 47899999999875 246799999999999998887766554322 124689999996 47889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.+|.... .+.+....+...... .........+|+|+|++.+...... ..+....+++||+||
T Consensus 124 ~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~ivv~Tp~~l~~~l~~------------~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 124 GLLALGDYM--NVQCHACIGGTNVGE--DIRKLDYGQHVVAGTPGRVFDMIRR------------RSLRTRAIKMLVLDE 187 (410)
T ss_dssp HHHHHTTTT--TCCEEEECTTSCHHH--HHHHHHHCCSEEEECHHHHHHHHHT------------TSSCCTTCCEEEEET
T ss_pred HHHHHhccC--CeEEEEEECCCCHHH--HHHHhhcCCCEEEcCHHHHHHHHHh------------CCccHhheeEEEEcc
Confidence 999997542 355555554432221 1223335678999999887532111 011123689999999
Q ss_pred CcccCCcc--cHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 541 AHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 541 aH~iKN~~--S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||++.+.. ..+...+..+ ...+.+++||||-. ++.. ++. ..+..|+....
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~---~~~-----------~~~~~~~~~~~--------- 240 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH----EILE---MTN-----------KFMTDPIRILV--------- 240 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH----HHHT---TGG-----------GTCSSCEEECC---------
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH----HHHH---HHH-----------HHcCCCEEEEe---------
Confidence 99987654 2333334444 45688999999721 1110 000 00000000000
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
. .....++......+.
T Consensus 241 ---------------------~--~~~~~~~~~~~~~~~----------------------------------------- 256 (410)
T 2j0s_A 241 ---------------------K--RDELTLEGIKQFFVA----------------------------------------- 256 (410)
T ss_dssp ---------------------C--GGGCSCTTEEEEEEE-----------------------------------------
T ss_pred ---------------------c--CccccCCCceEEEEE-----------------------------------------
Confidence 0 000000000000000
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
......
T Consensus 257 --------------------------------------------------------------------------~~~~~~ 262 (410)
T 2j0s_A 257 --------------------------------------------------------------------------VEREEW 262 (410)
T ss_dssp --------------------------------------------------------------------------ESSTTH
T ss_pred --------------------------------------------------------------------------eCcHHh
Confidence 001123
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|+..|.+++... .+.++|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 263 k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~h~~~~~~~r~~~~~~f~~g--- 325 (410)
T 2j0s_A 263 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRE------------ANFTVSSMHGDMPQKERESIMKEFRSG--- 325 (410)
T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHh------------CCCceEEeeCCCCHHHHHHHHHHHHCC---
Confidence 677777777764 356999999999999999999986 578899999999999999999999963
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
.++ +|++|.++++|||+++++.||+||++|++..+.|++||++|.|+... +|.|+...
T Consensus 326 ~~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 326 ASR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp SSC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred CCC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 344 58899999999999999999999999999999999999999997654 44455543
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.93 E-value=9.7e-26 Score=264.97 Aligned_cols=321 Identities=16% Similarity=0.145 Sum_probs=203.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..++ .+..+|+..+||+|||++++..+...+.... ...++|||+|. .++.||.+
T Consensus 62 ~~~~~Q~~~i~~~~--------------~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~ 126 (414)
T 3eiq_A 62 KPSAIQQRAILPCI--------------KGYDVIAQAQSGTGKTATFAISILQQIELDL-KATQALVLAPTRELAQQIQK 126 (414)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHhHHHh--------------CCCCEEEECCCCCcccHHHHHHHHHHHhhcC-CceeEEEEeChHHHHHHHHH
Confidence 47899999998774 2467999999999999997777665543321 24689999997 47789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHh-hcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~-~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++.++.... .+.+....+...... . ..... ...+|+|+|++.+...... ..+....+++||+|
T Consensus 127 ~~~~~~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~~~iiv~T~~~l~~~l~~------------~~~~~~~~~~vViD 190 (414)
T 3eiq_A 127 VVMALGDYM--GASCHACIGGTNVRA-E-VQKLQMEAPHIIVGTPGRVFDMLNR------------RYLSPKYIKMFVLD 190 (414)
T ss_dssp HHHHHGGGS--CCCEEECCCCTTHHH-H-HHHHTTTCCSEEEECHHHHHHHHHH------------TSSCSTTCCEEEEC
T ss_pred HHHHHhccc--CceEEEEECCcchHH-H-HHHHhcCCCCEEEECHHHHHHHHHc------------CCcccccCcEEEEE
Confidence 999987431 244444444332211 1 12222 4568999999987532100 11112368999999
Q ss_pred CCcccCCcc--cHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 001149 540 EAHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 616 (1138)
Q Consensus 540 EaH~iKN~~--S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~ 616 (1138)
|||++.+.. ..+...+..+ ...+.++|||||-. ++..+
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~----------------------------------- 231 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS----DVLEV----------------------------------- 231 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCH----HHHHH-----------------------------------
T ss_pred CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH----HHHHH-----------------------------------
Confidence 999985432 4445555555 56678999999821 00000
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHH
Q 001149 617 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 696 (1138)
Q Consensus 617 ~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 696 (1138)
+..+ +.... .+.+.. ....
T Consensus 232 --------------~~~~------------~~~~~--~~~~~~-------------------~~~~-------------- 250 (414)
T 3eiq_A 232 --------------TKKF------------MRDPI--RILVKK-------------------EELT-------------- 250 (414)
T ss_dssp --------------HTTT------------CSSCE--EECCCC-------------------CCCC--------------
T ss_pred --------------HHHH------------cCCCE--EEEecC-------------------CccC--------------
Confidence 0000 00000 000000 0000
Q ss_pred HHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCC
Q 001149 697 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 776 (1138)
Q Consensus 697 Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 776 (1138)
.+.+ ...........
T Consensus 251 ------~~~~-----------------------------------------------------------~~~~~~~~~~~ 265 (414)
T 3eiq_A 251 ------LEGI-----------------------------------------------------------RQFYINVEREE 265 (414)
T ss_dssp ------TTSC-----------------------------------------------------------CEEEEECSSST
T ss_pred ------CCCc-----------------------------------------------------------eEEEEEeChHH
Confidence 0000 00000001123
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+..+.+++... .+.++|||+++...++.+...|.. .|+.+..++|.++..+|..+++.|+++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~------------~~~~~~~~h~~~~~~~r~~~~~~f~~g-- 329 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHA------------RDFTVSAMHGDMDQKERDVIMREFRSG-- 329 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHT------------TTCCCEEC---CHHHHHHHHHHHHSCC--
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHh------------cCCeEEEecCCCCHHHHHHHHHHHHcC--
Confidence 4788888888764 467999999999999999999986 578899999999999999999999863
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
.++ +|++|.++++|||+++++.||+||++||+..+.|++||++|.|+...+ |.|+...
T Consensus 330 -~~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 387 (414)
T 3eiq_A 330 -SSR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA--INMVTEE 387 (414)
T ss_dssp -----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CE--EEEECST
T ss_pred -CCc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceE--EEEEcHH
Confidence 344 589999999999999999999999999999999999999999987544 4456554
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.93 E-value=4e-25 Score=257.39 Aligned_cols=315 Identities=17% Similarity=0.197 Sum_probs=208.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.++|||.+++..++. ..+.++|+..+||+|||++++..+...+.... ..+++|||||.. |+.||.+
T Consensus 27 ~~~~~Q~~~i~~~~~------------~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~ 93 (395)
T 3pey_A 27 KPSKIQERALPLLLH------------NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-ASPQAICLAPSRELARQTLE 93 (395)
T ss_dssp SCCHHHHHHHHHHHC------------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc------------CCCCeEEEECCCCCcHHHHHHHHHHHHhccCC-CCccEEEECCCHHHHHHHHH
Confidence 589999999988752 23478999999999999998877766543322 246899999975 7789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.... .+.+....+...... .....+|+|+|++.+...... .......+++||+||
T Consensus 94 ~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~iiv~T~~~l~~~~~~------------~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 94 VVQEMGKFT--KITSQLIVPDSFEKN------KQINAQVIVGTPGTVLDLMRR------------KLMQLQKIKIFVLDE 153 (395)
T ss_dssp HHHHHTTTS--CCCEEEESTTSSCTT------SCBCCSEEEECHHHHHHHHHT------------TCBCCTTCCEEEEET
T ss_pred HHHHHhccc--CeeEEEEecCchhhh------ccCCCCEEEEcHHHHHHHHHc------------CCcccccCCEEEEEC
Confidence 999987532 244444443321110 013568999999987542111 011123789999999
Q ss_pred CcccCCccc--HHHHHH-Hhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 001149 541 AHMIKNTRA--DTTQAL-KQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 616 (1138)
Q Consensus 541 aH~iKN~~S--~~skal-~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~ 616 (1138)
||++.+... .....+ ..+ ...+.++|||||-. .+..+
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~----------------------------------- 194 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD----AVRQY----------------------------------- 194 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHH-----------------------------------
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCH----HHHHH-----------------------------------
Confidence 999864222 222222 223 34678999999731 00000
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHH
Q 001149 617 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 696 (1138)
Q Consensus 617 ~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 696 (1138)
+..+ ++.... +.... ...
T Consensus 195 --------------~~~~------------~~~~~~----~~~~~-----------------~~~--------------- 212 (395)
T 3pey_A 195 --------------AKKI------------VPNANT----LELQT-----------------NEV--------------- 212 (395)
T ss_dssp --------------HHHH------------SCSCEE----ECCCG-----------------GGC---------------
T ss_pred --------------HHHh------------CCCCeE----EEccc-----------------ccc---------------
Confidence 0000 000000 00000 000
Q ss_pred HHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCC
Q 001149 697 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 776 (1138)
Q Consensus 697 Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 776 (1138)
..+.+. ..........
T Consensus 213 -----~~~~~~-----------------------------------------------------------~~~~~~~~~~ 228 (395)
T 3pey_A 213 -----NVDAIK-----------------------------------------------------------QLYMDCKNEA 228 (395)
T ss_dssp -----SCTTEE-----------------------------------------------------------EEEEECSSHH
T ss_pred -----cccccc-----------------------------------------------------------EEEEEcCchH
Confidence 000000 0000000113
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|...+.+++... .+.++|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 229 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~g-- 292 (395)
T 3pey_A 229 DKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKS------------EGHEVSILHGDLQTQERDRLIDDFREG-- 292 (395)
T ss_dssp HHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHh------------cCCcEEEeCCCCCHHHHHHHHHHHHCC--
Confidence 4666666666543 468999999999999999999987 578899999999999999999999963
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCC------CcchHHHHHHHHHhhCCCCcEEEE
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSW------NPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W------NP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
.++ +|++|.++++|+|+++++.||+||++| ++..+.|++||++|.|+...+++|
T Consensus 293 -~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 293 -RSK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp -SCC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred -CCC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 444 589999999999999999999999999 999999999999999986555443
No 28
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.93 E-value=5.2e-26 Score=265.22 Aligned_cols=315 Identities=16% Similarity=0.134 Sum_probs=108.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.|+|||.+++.+++. +..+++..+||+|||++++..+...+... ....++|||||. .++.||.+
T Consensus 43 ~~~~~Q~~~i~~i~~--------------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~~q~~~ 107 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIE--------------GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELALQIQK 107 (394)
T ss_dssp SCCHHHHHHHHHHHH--------------TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------------CCCEEEECCCCChHHHHHHHHHHHHhhcc-CCCCCEEEEcCCHHHHHHHHH
Confidence 588999999998854 36799999999999998666555443322 124589999997 67889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchh-HHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~-~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++.++.+.. .+.+..+.+.... ..... + ...+|+|+|++.+...... .......+++||+|
T Consensus 108 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~~---~-~~~~i~v~T~~~l~~~~~~------------~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 108 VVMALAFHM--DIKVHACIGGTSFVEDAEG---L-RDAQIVVGTPGRVFDNIQR------------RRFRTDKIKMFILD 169 (394)
T ss_dssp HHHHHTTTS--CCCEEEECSSCCHHHHHHH---H-HHCSEEEECHHHHHHHHHT------------TSSCCTTCCEEEEE
T ss_pred HHHHHhccC--CeeEEEEeCCCchHHHHhh---c-CCCCEEEECHHHHHHHHHh------------CCcchhhCcEEEEE
Confidence 999998642 3556666554332 22221 2 2578999999987532110 01122378999999
Q ss_pred CCcccCC--cccHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 001149 540 EAHMIKN--TRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 616 (1138)
Q Consensus 540 EaH~iKN--~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~ 616 (1138)
|||++.+ ........+..+ ...+.++|||||-. ++..
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~------------------------------------ 209 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN----DVLE------------------------------------ 209 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH----HHHH------------------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCH----HHHH------------------------------------
Confidence 9999743 233344445555 45678999999821 0000
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHH
Q 001149 617 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 696 (1138)
Q Consensus 617 ~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 696 (1138)
.+..++ .... .+.+.-..... ..+ . ..+.
T Consensus 210 -------------~~~~~~------------~~~~--~~~~~~~~~~~---~~~----------------~-~~~~---- 238 (394)
T 1fuu_A 210 -------------VTTKFM------------RNPV--RILVKKDELTL---EGI----------------K-QFYV---- 238 (394)
T ss_dssp -------------HHHHHC------------CSCE--EEEECC-------------------------------------
T ss_pred -------------HHHHhc------------CCCe--EEEecCccccC---CCc----------------e-EEEE----
Confidence 000000 0000 00000000000 000 0 0000
Q ss_pred HHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCC
Q 001149 697 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 776 (1138)
Q Consensus 697 Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 776 (1138)
. .....
T Consensus 239 ------~--------------------------------------------------------------------~~~~~ 244 (394)
T 1fuu_A 239 ------N--------------------------------------------------------------------VEEEE 244 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------E--------------------------------------------------------------------cCchh
Confidence 0 00001
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|...+.+++... .+.++|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 245 ~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~--- 307 (394)
T 1fuu_A 245 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRN------------DKFTVSAIYSDLPQQERDTIMKEFRS--- 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHH------------cCCeEEEeeCCCCHHHHHHHHHHHHC---
Confidence 2344455555442 357999999999999999999986 57889999999999999999999986
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
+..+ +|++|.++++|+|+++++.||++|++|++..+.|++||++|.|+...+++|
T Consensus 308 ~~~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 308 GSSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp --------------------------------------------------------
T ss_pred CCCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 3343 688999999999999999999999999999999999999999987655443
No 29
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.91 E-value=2.6e-23 Score=247.18 Aligned_cols=318 Identities=18% Similarity=0.194 Sum_probs=213.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc----cCCCceEEEeCc-chHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN----LGLRTALIVTPV-NVLH 456 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~----~~~k~vLIV~P~-sll~ 456 (1138)
.++|+|.+++..+. .+...|+...||+|||+..+..+...+.... .....+|||+|. .|+.
T Consensus 78 ~pt~iQ~~ai~~i~--------------~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~ 143 (434)
T 2db3_A 78 IPTPIQKCSIPVIS--------------SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAI 143 (434)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHh--------------cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHH
Confidence 47899999998774 3578999999999999987665554433221 123579999997 5788
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEE
Q 001149 457 NWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 536 (1138)
Q Consensus 457 qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlV 536 (1138)
||.+++.++.... .+++..+.+...... .........+|+|+|++.+..+... .......+++|
T Consensus 144 Q~~~~~~~~~~~~--~~~~~~~~gg~~~~~--~~~~l~~~~~Ivv~Tp~~l~~~l~~------------~~~~l~~~~~l 207 (434)
T 2db3_A 144 QIFNEARKFAFES--YLKIGIVYGGTSFRH--QNECITRGCHVVIATPGRLLDFVDR------------TFITFEDTRFV 207 (434)
T ss_dssp HHHHHHHHHTTTS--SCCCCEECTTSCHHH--HHHHHTTCCSEEEECHHHHHHHHHT------------TSCCCTTCCEE
T ss_pred HHHHHHHHHhccC--CcEEEEEECCCCHHH--HHHHhhcCCCEEEEChHHHHHHHHh------------CCcccccCCeE
Confidence 9999999998642 244444444332221 1122335678999999987542110 01112378999
Q ss_pred EEcCCcccCCcc--cHHHHHHHhc---ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 001149 537 VCDEAHMIKNTR--ADTTQALKQV---KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 611 (1138)
Q Consensus 537 IlDEaH~iKN~~--S~~skal~~l---~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~ 611 (1138)
|+||||++.... ....+.+..+ .....+++|||+-. ++..+
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~----~~~~~------------------------------ 253 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE----EIQRM------------------------------ 253 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCH----HHHHH------------------------------
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCH----HHHHH------------------------------
Confidence 999999986543 3344444443 45678999999721 11000
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 001149 612 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 691 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l 691 (1138)
...+ +... ..+.+... ...
T Consensus 254 -------------------~~~~------------l~~~--~~i~~~~~-----------------~~~----------- 272 (434)
T 2db3_A 254 -------------------AGEF------------LKNY--VFVAIGIV-----------------GGA----------- 272 (434)
T ss_dssp -------------------HHTT------------CSSC--EEEEESST-----------------TCC-----------
T ss_pred -------------------HHHh------------ccCC--EEEEeccc-----------------ccc-----------
Confidence 0000 1100 00000000 000
Q ss_pred HHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhccccc
Q 001149 692 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 771 (1138)
Q Consensus 692 ~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~ 771 (1138)
.+.+ ...+.
T Consensus 273 -----------~~~i------------------------------------------------------------~~~~~ 281 (434)
T 2db3_A 273 -----------CSDV------------------------------------------------------------KQTIY 281 (434)
T ss_dssp -----------CTTE------------------------------------------------------------EEEEE
T ss_pred -----------cccc------------------------------------------------------------ceEEE
Confidence 0000 00000
Q ss_pred ccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHH
Q 001149 772 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 851 (1138)
Q Consensus 772 ~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~F 851 (1138)
......|...|.++|... +.++|||+++...++.+..+|.. .|+.+..++|+++..+|..++++|
T Consensus 282 ~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~------------~~~~~~~lhg~~~~~~R~~~l~~F 346 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSE------------KEFPTTSIHGDRLQSQREQALRDF 346 (434)
T ss_dssp ECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHH------------TTCCEEEESTTSCHHHHHHHHHHH
T ss_pred EeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHh------------CCCCEEEEeCCCCHHHHHHHHHHH
Confidence 112245777788887763 45699999999999999999987 588999999999999999999999
Q ss_pred cCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEec
Q 001149 852 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 916 (1138)
Q Consensus 852 n~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~ 916 (1138)
+++ .++ +|++|.+++.|||+.++++||+||++|++..+.|++||++|.|+...+++ |+.
T Consensus 347 ~~g---~~~-vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~--~~~ 405 (434)
T 2db3_A 347 KNG---SMK-VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATS--FFD 405 (434)
T ss_dssp HTS---SCS-EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEE--EEC
T ss_pred HcC---CCc-EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEE--EEe
Confidence 963 444 58999999999999999999999999999999999999999998755444 454
No 30
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.91 E-value=6.4e-24 Score=249.86 Aligned_cols=124 Identities=22% Similarity=0.317 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|...|.+++... ..+.++|||+++...++.+..+|.. .|+.+..++|.++..+|..++++|++
T Consensus 260 ~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~h~~~~~~~r~~~~~~f~~-- 324 (417)
T 2i4i_A 260 SDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYH------------EGYACTSIHGDRSQRDREEALHQFRS-- 324 (417)
T ss_dssp GGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHH--
T ss_pred HhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHH------------CCCCeeEecCCCCHHHHHHHHHHHHc--
Confidence 34677777777764 3578999999999999999999986 58899999999999999999999986
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
+.++ +|++|.++++|||+++++.||+||++|++..+.|++||++|.|+.. .+|.|+...
T Consensus 325 -g~~~-vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (417)
T 2i4i_A 325 -GKSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 383 (417)
T ss_dssp -TSSC-EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEEECGG
T ss_pred -CCCC-EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEEEccc
Confidence 3444 6899999999999999999999999999999999999999999764 444455443
No 31
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.91 E-value=2.7e-23 Score=243.77 Aligned_cols=116 Identities=24% Similarity=0.316 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+..+.+++... .+.++|||+++...++.+...|.. .|+.+..++|.++..+|..+++.|+++
T Consensus 252 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~g-- 315 (412)
T 3fht_A 252 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSK------------EGHQVALLSGEMMVEQRAAVIERFREG-- 315 (412)
T ss_dssp HHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHh------------CCCeEEEecCCCCHHHHHHHHHHHHCC--
Confidence 4777777777763 467999999999999999999987 578899999999999999999999963
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCCCCc------chHHHHHHHHHhhCCCCcEE
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP------TYDLQAIYRAWRYGQTKPVF 910 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP------~~~~QAigR~~RiGQ~k~V~ 910 (1138)
.++ +|++|.++++|||+++++.||+||++|++ ..+.|++||++|.|+...++
T Consensus 316 -~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 373 (412)
T 3fht_A 316 -KEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 373 (412)
T ss_dssp -SCS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred -CCc-EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEE
Confidence 444 58999999999999999999999999987 58999999999999764443
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.90 E-value=6.2e-22 Score=233.41 Aligned_cols=302 Identities=13% Similarity=0.104 Sum_probs=206.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..++ .+..+|+..++|+|||+.++..+.... ...+.+|||+|. .|+.||.+
T Consensus 21 ~~~~~Q~~~i~~i~--------------~~~~~lv~apTGsGKT~~~l~~~~~~~----~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 21 DLTGYQRLWAKRIV--------------QGKSFTMVAPTGVGKTTFGMMTALWLA----RKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp CCCHHHHHHHHHHT--------------TTCCEECCSCSSSSHHHHHHHHHHHHH----TTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------cCCCEEEEeCCCCCHHHHHHHHHHHHh----cCCCEEEEEECCHHHHHHHHH
Confidence 47899999998773 346899999999999996555544433 124689999996 57889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHhhc-CCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~~-~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
++.+|.+ ..+++..+.+... ..+...+..+... .+|+|+|++.+.... ..+....+++||+
T Consensus 83 ~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l--------------~~~~~~~~~~iVi 145 (414)
T 3oiy_A 83 RLQKLAD---EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR--------------EKLSQKRFDFVFV 145 (414)
T ss_dssp HHHHHCC---SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCH--------------HHHTTCCCSEEEE
T ss_pred HHHHHcc---CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHH--------------HHhccccccEEEE
Confidence 9999986 2367777766543 3333334444343 799999999875321 1122348999999
Q ss_pred cCCcccC-------------CcccH-HHHHHHhc------------ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCC
Q 001149 539 DEAHMIK-------------NTRAD-TTQALKQV------------KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 592 (1138)
Q Consensus 539 DEaH~iK-------------N~~S~-~skal~~l------------~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~ 592 (1138)
||||.+. +.... +...+..+ .....+++||||....+.+.+.
T Consensus 146 DEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~------------ 213 (414)
T 3oiy_A 146 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF------------ 213 (414)
T ss_dssp SCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH------------
T ss_pred eChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH------------
Confidence 9999863 22223 33444443 4567899999976544321110
Q ss_pred hHHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh-h-cCCCCeEEEEEecCCHHHHHHHHHH
Q 001149 593 SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVK-K-DLPPKTVFVITVKLSPLQRRLYKRF 670 (1138)
Q Consensus 593 ~~eF~~~f~~pi~~g~~~~s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~-~-~LP~k~e~vv~v~Ls~~Q~~lY~~~ 670 (1138)
. .++. . .+. . ..++...+.
T Consensus 214 -----~----------------------------------~~~~---~-~~~~~~~~~~~i~~~---------------- 234 (414)
T 3oiy_A 214 -----R----------------------------------DLLN---F-TVGRLVSVARNITHV---------------- 234 (414)
T ss_dssp -----H----------------------------------HHHS---C-CSSCCCCCCCSEEEE----------------
T ss_pred -----H----------------------------------Hhhc---c-CcCccccccccchhe----------------
Confidence 0 0000 0 000 0 000000000
Q ss_pred HHhhcccccccchHHHHhhHHHHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCC
Q 001149 671 LDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGK 750 (1138)
Q Consensus 671 l~~~~~~~~~~~~~~~~~~~l~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~ 750 (1138)
T Consensus 235 -------------------------------------------------------------------------------- 234 (414)
T 3oiy_A 235 -------------------------------------------------------------------------------- 234 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhhhhhhhhcccccccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCc
Q 001149 751 NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 830 (1138)
Q Consensus 751 ~~~~~~~~~~~~~l~~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi 830 (1138)
.....|...|.++|.. .+.++|||++.....+.+...|.. .|+
T Consensus 235 ----------------------~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~------------~~~ 277 (414)
T 3oiy_A 235 ----------------------RISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKR------------FKF 277 (414)
T ss_dssp ----------------------EESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHH------------TTC
T ss_pred ----------------------eeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHH------------cCC
Confidence 0011356667777776 358999999999999999999987 477
Q ss_pred eEE-EEeCCCCHHHHHHHHHHHcCCCCCCceEEEee---ccccccCCCccc-CCEEEEEcCC--CCcchHHHHHHHHHhh
Q 001149 831 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLIS---TRAGSLGINLHS-ANRVIIVDGS--WNPTYDLQAIYRAWRY 903 (1138)
Q Consensus 831 ~~~-rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiS---TkaGg~GLNLt~-An~VIi~D~~--WNP~~~~QAigR~~Ri 903 (1138)
... .++|. +|+ ++.|++ +.++|++.| |.+++.|||+++ ++.||+||++ +++..+.|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~---g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKV---GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHT---TSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhC---CCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 887 78884 444 999996 456654443 999999999999 9999999999 9999999999999999
Q ss_pred CCC--CcEEEEEEe
Q 001149 904 GQT--KPVFAYRLM 915 (1138)
Q Consensus 904 GQ~--k~V~VyrLv 915 (1138)
|+. +.-.+|.|+
T Consensus 349 g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE 362 (414)
T ss_dssp ETTEECCEEEEEEC
T ss_pred CCCCCcceEEEEEE
Confidence 986 567777777
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.90 E-value=1.8e-22 Score=245.15 Aligned_cols=305 Identities=18% Similarity=0.215 Sum_probs=207.5
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..+. .+..+++...||.|||+.++..+. .. .+.+|||+|. .|+.||.+
T Consensus 25 ~~r~~Q~~~i~~il--------------~g~d~lv~apTGsGKTl~~~lp~l--~~-----~g~~lvi~P~~aL~~q~~~ 83 (523)
T 1oyw_A 25 QFRPGQEEIIDTVL--------------SGRDCLVVMPTGGGKSLCYQIPAL--LL-----NGLTVVVSPLISLMKDQVD 83 (523)
T ss_dssp SCCTTHHHHHHHHH--------------TTCCEEEECSCHHHHHHHHHHHHH--HS-----SSEEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------------cCCCEEEECCCCcHHHHHHHHHHH--Hh-----CCCEEEECChHHHHHHHHH
Confidence 57999999998874 346899999999999986543332 21 2578999996 67889999
Q ss_pred HHHHHCCCCCCCeEEEEecCc-chhHHHHHHHHHh-hcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~-~~~~r~~~l~~~~-~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
++.++. +.+..+++. ....+........ ...+++++|++.+.... +.. .+....+++||+
T Consensus 84 ~l~~~g------i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~---------~~~---~l~~~~~~~vVi 145 (523)
T 1oyw_A 84 QLQANG------VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN---------FLE---HLAHWNPVLLAV 145 (523)
T ss_dssp HHHHTT------CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT---------HHH---HHTTSCEEEEEE
T ss_pred HHHHcC------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH---------HHH---HHhhCCCCEEEE
Confidence 999863 344444443 3333333333332 35789999999875321 111 112247889999
Q ss_pred cCCcccCCccc-------HHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 001149 539 DEAHMIKNTRA-------DTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 611 (1138)
Q Consensus 539 DEaH~iKN~~S-------~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~ 611 (1138)
||||.+..... .+......+....+++|||||-.+...++...+.+
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~--------------------------- 198 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL--------------------------- 198 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTC---------------------------
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCC---------------------------
Confidence 99999864321 12223334456789999999953222222221111
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 001149 612 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 691 (1138)
Q Consensus 612 s~~~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l 691 (1138)
.... +.+.- +
T Consensus 199 ------------------------------------~~~~---~~~~~----------------~--------------- 208 (523)
T 1oyw_A 199 ------------------------------------NDPL---IQISS----------------F--------------- 208 (523)
T ss_dssp ------------------------------------CSCE---EEECC----------------C---------------
T ss_pred ------------------------------------CCCe---EEeCC----------------C---------------
Confidence 0000 00000 0
Q ss_pred HHHHHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhccccc
Q 001149 692 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 771 (1138)
Q Consensus 692 ~~l~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~ 771 (1138)
+.|.+. +.
T Consensus 209 ----------~r~~l~--------------------------------------------------------------~~ 216 (523)
T 1oyw_A 209 ----------DRPNIR--------------------------------------------------------------YM 216 (523)
T ss_dssp ----------CCTTEE--------------------------------------------------------------EE
T ss_pred ----------CCCceE--------------------------------------------------------------EE
Confidence 000000 00
Q ss_pred ccCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHH
Q 001149 772 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 851 (1138)
Q Consensus 772 ~~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~F 851 (1138)
......|+..|.++|... .+.++|||+.+....+.+...|.. .|+.+..++|+++.++|..+++.|
T Consensus 217 v~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~------------~g~~~~~~h~~l~~~~R~~~~~~f 282 (523)
T 1oyw_A 217 LMEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQS------------KGISAAAYHAGLENNVRADVQEKF 282 (523)
T ss_dssp EEECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHH------------CCCCEEEecCCCCHHHHHHHHHHH
Confidence 001123555666777653 578999999999999999999987 588999999999999999999999
Q ss_pred cCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 852 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 852 n~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
.++ .++ +|++|.+.|.|||++.++.||+|++++++..+.|++||++|.|+...++++
T Consensus 283 ~~g---~~~-vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 283 QRD---DLQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp HTT---SCS-EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HcC---CCe-EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 973 344 588999999999999999999999999999999999999999987665553
No 34
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.89 E-value=4.2e-22 Score=245.33 Aligned_cols=109 Identities=18% Similarity=0.328 Sum_probs=95.5
Q ss_pred cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccc
Q 001149 791 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 870 (1138)
Q Consensus 791 ~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg 870 (1138)
..+.++|||+.+...++.+...|... ...|+.+..++|.++..+|..++++|++ +.++ +|++|.+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~---------~~~~~~v~~~hg~~~~~~R~~~~~~F~~---g~~~-vLVaT~~~~ 352 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNE---------FKKDLPILEFHGKITQNKRTSLVKRFKK---DESG-ILVCTDVGA 352 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHH---------HTTTSCEEEESTTSCHHHHHHHHHHHHH---CSSE-EEEECGGGT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHh---------hcCCCcEEEecCCCCHHHHHHHHHHhhc---CCCe-EEEEcchhh
Confidence 45789999999999999999999862 1137899999999999999999999996 3444 689999999
Q ss_pred cCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 871 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 871 ~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
.|||+++++.||+||+++++..+.|++||++|.|+...+.+|
T Consensus 353 ~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 353 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp SSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred cCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 999999999999999999999999999999999976544443
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.88 E-value=5.7e-22 Score=259.85 Aligned_cols=314 Identities=17% Similarity=0.240 Sum_probs=211.5
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.++|||.+++..+...+.. .....+|++.+||+|||++++..+...... .+.+|||||.. |+.||.+
T Consensus 603 ~~t~~Q~~ai~~il~~~~~--------g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~~La~Q~~~ 670 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQ--------PLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTTLLAQQHYD 670 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHS--------SSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhc--------CCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechHHHHHHHHH
Confidence 4799999999988764321 122478999999999999987655444332 35899999976 6779999
Q ss_pred HHHHHCCCCCCCeEEEEecCcc-hhHHHHHHHHHhh-cCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~-~~~r~~~l~~~~~-~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
+|.++++.. ++++..+++.. ...+...+..... ..+|+|+|+..+... .....+++||+
T Consensus 671 ~~~~~~~~~--~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~-----------------~~~~~l~lvIi 731 (1151)
T 2eyq_A 671 NFRDRFANW--PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD-----------------VKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHSTTT--TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC-----------------CCCSSEEEEEE
T ss_pred HHHHHhhcC--CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC-----------------ccccccceEEE
Confidence 999988652 35666666543 3333334443333 478999999876421 11136789999
Q ss_pred cCCcccCCcccHHHHHHHhcc-cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 539 DEAHMIKNTRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~l~-~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||+|++. ......++.+. ..+.++|||||+.+.+..... .+
T Consensus 732 DEaH~~g---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~---~~-------------------------------- 773 (1151)
T 2eyq_A 732 DEEHRFG---VRHKERIKAMRANVDILTLTATPIPRTLNMAMS---GM-------------------------------- 773 (1151)
T ss_dssp ESGGGSC---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHT---TT--------------------------------
T ss_pred echHhcC---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHh---cC--------------------------------
Confidence 9999973 34455566664 467899999997542211000 00
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
+....+ ..|+.....+..
T Consensus 774 --------------------~~~~~i--~~~~~~r~~i~~---------------------------------------- 791 (1151)
T 2eyq_A 774 --------------------RDLSII--ATPPARRLAVKT---------------------------------------- 791 (1151)
T ss_dssp --------------------SEEEEC--CCCCCBCBCEEE----------------------------------------
T ss_pred --------------------CCceEE--ecCCCCccccEE----------------------------------------
Confidence 000000 000000000000
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
......
T Consensus 792 --------------------------------------------------------------------------~~~~~~ 797 (1151)
T 2eyq_A 792 --------------------------------------------------------------------------FVREYD 797 (1151)
T ss_dssp --------------------------------------------------------------------------EEEECC
T ss_pred --------------------------------------------------------------------------EEecCC
Confidence 000001
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
+..+...++.. ...|.+++||++....++.+.+.|... ..++.+..++|.++..+|++++++|++ +
T Consensus 798 ~~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~----------~p~~~v~~lhg~~~~~eR~~il~~F~~---g 863 (1151)
T 2eyq_A 798 SMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAEL----------VPEARIAIGHGQMRERELERVMNDFHH---Q 863 (1151)
T ss_dssp HHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHH----------CTTSCEEECCSSCCHHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHh----------CCCCeEEEEeCCCCHHHHHHHHHHHHc---C
Confidence 11222233333 345899999999999999999999873 147889999999999999999999996 4
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcC-CCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDG-SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~-~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
.++ +|++|.++++|||++++++||++++ .|++....|++||++|.|+.. ++|.++..
T Consensus 864 ~~~-VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~ 921 (1151)
T 2eyq_A 864 RFN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPH 921 (1151)
T ss_dssp SCC-EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECC
T ss_pred CCc-EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECC
Confidence 454 5889999999999999999999998 699999999999999999754 44555544
No 36
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=1.1e-21 Score=241.09 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
++..|.++|... ..+.++|||+.+....+.+...|.. .|+....++|+++..+|..++++|.+ +
T Consensus 253 ~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~------------~g~~~~~~h~~l~~~~R~~~~~~F~~---g 316 (591)
T 2v1x_A 253 FIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQN------------LGIHAGAYHANLEPEDKTTVHRKWSA---N 316 (591)
T ss_dssp HHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHH------------CCCCEEEecCCCCHHHHHHHHHHHHc---C
Confidence 344455555432 2578999999999999999999986 58899999999999999999999996 3
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
.++ +|++|.+.|.|||+++++.||+||+++++..+.|++||++|.|+...+.++
T Consensus 317 ~~~-VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 317 EIQ-VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SSS-EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCe-EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 444 589999999999999999999999999999999999999999987666554
No 37
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.88 E-value=1.5e-21 Score=239.42 Aligned_cols=112 Identities=18% Similarity=0.296 Sum_probs=96.6
Q ss_pred cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccc
Q 001149 791 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 870 (1138)
Q Consensus 791 ~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg 870 (1138)
..+.++|||+.+....+.+..+|.... ..|+.+..++|.++..+|..+++.|++ +.+. +|++|.+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~---------~~~~~v~~~h~~~~~~~R~~~~~~f~~---g~~~-vLvaT~~~~ 403 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEF---------KKDLPILEFHGKITQNKRTSLVKRFKK---DESG-ILVCTDVGA 403 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHH---------TTTSCEEEESTTSCHHHHHHHHHHHHH---CSSE-EEEECGGGT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhc---------cCCceEEEecCCCCHHHHHHHHHHHhc---CCCC-EEEEcchhh
Confidence 457899999999999999999998621 237899999999999999999999996 3444 689999999
Q ss_pred cCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecC
Q 001149 871 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 917 (1138)
Q Consensus 871 ~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~ 917 (1138)
.|||+++++.||+||+++++..+.|++||++|.|+...+. .|+..
T Consensus 404 ~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i--~~~~~ 448 (563)
T 3i5x_A 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV--LFICK 448 (563)
T ss_dssp SSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEE--EEEEG
T ss_pred cCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEE--EEEch
Confidence 9999999999999999999999999999999999764443 34444
No 38
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.3e-22 Score=243.68 Aligned_cols=315 Identities=16% Similarity=0.178 Sum_probs=183.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.++|||.+++..+++ ..+..+|+...||+|||++++..+...+.... ..+++|||+|.. |+.||.+
T Consensus 141 ~p~~~Q~~ai~~i~~------------~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-~~~~vLvl~P~~~L~~Q~~~ 207 (508)
T 3fho_A 141 XXXKIQEKALPLLLS------------NPPRNMIGQSQSGTGKTAAFALTMLSRVDASV-PKPQAICLAPSRELARQIMD 207 (508)
T ss_dssp ECCCTTSSSHHHHHC------------SSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-CSCCEEEECSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc------------CCCCCEEEECCCCccHHHHHHHHHHHHHHhCC-CCceEEEEECcHHHHHHHHH
Confidence 589999999987642 12478999999999999987776665543322 235899999965 7889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.+++... .+.+....+.... .......+|+|+|++.+....... ......+++||+||
T Consensus 208 ~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~Ivv~T~~~l~~~l~~~------------~~~~~~~~lIIiDE 267 (508)
T 3fho_A 208 VVTEMGKYT--EVKTAFGIKDSVP------KGAKIDAQIVIGTPGTVMDLMKRR------------QLDARDIKVFVLDE 267 (508)
T ss_dssp HHHHHSTTS--SCCEEC----------------CCCCSEEEECHHHHHHHHHTT------------CSCCTTCCEEEECC
T ss_pred HHHHhCCcc--CeeEEEEeCCccc------ccccCCCCEEEECHHHHHHHHHcC------------CccccCCCEEEEec
Confidence 999997642 1222222221111 111236789999999875421110 11123789999999
Q ss_pred CcccCCcc---cHHHHHHHhcc-cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 001149 541 AHMIKNTR---ADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 616 (1138)
Q Consensus 541 aH~iKN~~---S~~skal~~l~-~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~ 616 (1138)
+|++.... ......+..+. ..+.++|||||-. .+.++.. .|.
T Consensus 268 aH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~-~~~~~~~------------------~~~--------------- 313 (508)
T 3fho_A 268 ADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE-RVEKYAE------------------RFA--------------- 313 (508)
T ss_dssp HHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCST-HHHHHHH------------------HHS---------------
T ss_pred hhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH-HHHHHHH------------------Hhc---------------
Confidence 99986422 22333333343 4567999999831 1111110 000
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHH
Q 001149 617 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 696 (1138)
Q Consensus 617 ~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 696 (1138)
+.... +.+.. .....
T Consensus 314 -------------------------------~~~~~----i~~~~-----------------~~~~~------------- 328 (508)
T 3fho_A 314 -------------------------------PNANE----IRLKT-----------------EELSV------------- 328 (508)
T ss_dssp -------------------------------TTCEE----ECCCC-----------------CC----------------
T ss_pred -------------------------------CCCeE----EEecc-----------------ccCCc-------------
Confidence 00000 00000 00000
Q ss_pred HHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCC
Q 001149 697 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 776 (1138)
Q Consensus 697 Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 776 (1138)
+.+.. .........
T Consensus 329 -------~~~~~-----------------------------------------------------------~~~~~~~~~ 342 (508)
T 3fho_A 329 -------EGIKQ-----------------------------------------------------------LYMDCQSEE 342 (508)
T ss_dssp --------CCCC-----------------------------------------------------------EEEEC--CH
T ss_pred -------ccceE-----------------------------------------------------------EEEECCchH
Confidence 00000 000000112
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|...+.+++... .+.++|||+++...+..+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 343 ~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~------------~~~~v~~~hg~~~~~~R~~il~~f~~g-- 406 (508)
T 3fho_A 343 HKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTA------------DGHTVACLTGNLEGAQRDAIMDSFRVG-- 406 (508)
T ss_dssp HHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTT------------TTCCCCEEC-----CTTGGGTHHHHSS--
T ss_pred HHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHh------------CCCcEEEEeCCCCHHHHHHHHHHHHCC--
Confidence 3555666666543 468999999999999999999986 578899999999999999999999863
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCC------CCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGS------WNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~------WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
.++ +|++|.+++.|+|+++++.||++|++ +++....|++||++|.|+...++++
T Consensus 407 -~~~-VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 407 -TSK-VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp -SCC-CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred -CCe-EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 344 58999999999999999999999999 7899999999999999977666555
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.86 E-value=1.9e-21 Score=244.17 Aligned_cols=312 Identities=18% Similarity=0.198 Sum_probs=202.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.|+|+|.+++..+...+.. ....+.|+..+||+|||++++..+...+.. ...+||++|.. |..||.+
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~--------~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~La~Q~~~ 435 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMIS--------EKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSILAIQHYR 435 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHS--------SSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccc--------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHH
Confidence 5899999999988764321 233588999999999999988877766543 25899999974 6779999
Q ss_pred HHHHHCCCCCCCeEEEEecCcch-hHHHHHHHHHhh-cCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~-~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
+|.+|++. ..+++..+++... ..+...+..... ..+|+|.|+..|... .....+++||+
T Consensus 436 ~l~~~~~~--~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-----------------~~~~~l~lVVI 496 (780)
T 1gm5_A 436 RTVESFSK--FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED-----------------VHFKNLGLVII 496 (780)
T ss_dssp HHHHHHTC--SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC-----------------CCCSCCCEEEE
T ss_pred HHHHHhhh--cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh-----------------hhccCCceEEe
Confidence 99999864 2367777776543 344444444433 468999999876421 11237899999
Q ss_pred cCCcccCCcccHHHHHHHh-cccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 539 DEAHMIKNTRADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 539 DEaH~iKN~~S~~skal~~-l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
||+|++.... . ..+.. ....+.++|||||+.+.+.. ..| +..
T Consensus 497 DEaHr~g~~q--r-~~l~~~~~~~~vL~mSATp~p~tl~~----~~~------g~~------------------------ 539 (780)
T 1gm5_A 497 DEQHRFGVKQ--R-EALMNKGKMVDTLVMSATPIPRSMAL----AFY------GDL------------------------ 539 (780)
T ss_dssp ESCCCC--------CCCCSSSSCCCEEEEESSCCCHHHHH----HHT------CCS------------------------
T ss_pred cccchhhHHH--H-HHHHHhCCCCCEEEEeCCCCHHHHHH----HHh------CCc------------------------
Confidence 9999973211 1 11111 14578999999996532210 000 000
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
.. .+...+|+....+...
T Consensus 540 ---------------------~~-s~i~~~p~~r~~i~~~---------------------------------------- 557 (780)
T 1gm5_A 540 ---------------------DV-TVIDEMPPGRKEVQTM---------------------------------------- 557 (780)
T ss_dssp ---------------------SC-EEECCCCSSCCCCEEC----------------------------------------
T ss_pred ---------------------ce-eeeeccCCCCcceEEE----------------------------------------
Confidence 00 0000111110000000
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
.....
T Consensus 558 ---------------------------------------------------------------------------~~~~~ 562 (780)
T 1gm5_A 558 ---------------------------------------------------------------------------LVPMD 562 (780)
T ss_dssp ---------------------------------------------------------------------------CCCSS
T ss_pred ---------------------------------------------------------------------------Eeccc
Confidence 00011
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCc--------chHHHHHHHHhh-CCCCCCCcccccCCceEEEEeCCCCHHHHHHHH
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSI--------PTLDLIEFYLSK-LPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 848 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~--------~~ld~Le~~L~~-l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i 848 (1138)
+...+.+.+......+.+++||+... ..+..+.+.|.. . ..|+.+..++|+++..+|+.++
T Consensus 563 ~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~----------~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 563 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV----------FPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSC----------C---CBCCCCSSSCCSCSHHHH
T ss_pred hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh----------cCCCcEEEEeCCCCHHHHHHHH
Confidence 22334445554455677888888755 335556666654 2 1367888999999999999999
Q ss_pred HHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCcEEEE
Q 001149 849 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 849 ~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W-NP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
++|++ +.++ +|++|.+++.|||+++++.||++|+++ +.+...|++||++|.|+...|+++
T Consensus 633 ~~F~~---G~~~-ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 633 LEFAE---GRYD-ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp HHHTT---TSSS-BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred HHHHC---CCCe-EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 99996 3444 589999999999999999999999984 789999999999999987655543
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-20 Score=243.25 Aligned_cols=135 Identities=18% Similarity=0.118 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCC-----------------cc---c-----c--cCCc
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ-----------------GK---L-----W--KKGK 830 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~-----------------~~---~-----~--~~Gi 830 (1138)
++..++..+.. ..+.++|||+.+....+.+...|......... +. + + ....
T Consensus 330 ~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 407 (1010)
T 2xgj_A 330 DIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 407 (1010)
T ss_dssp HHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhC
Confidence 34444444433 23469999999999999999888764221100 00 0 0 0012
Q ss_pred eEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEE----EcC----CCCcchHHHHHHHHHh
Q 001149 831 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VDG----SWNPTYDLQAIYRAWR 902 (1138)
Q Consensus 831 ~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi----~D~----~WNP~~~~QAigR~~R 902 (1138)
.+..++|+++..+|+.+.+.|++ +.++ +|++|.+++.|||+++.+.||. ||. +|+|..+.|++||++|
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~---G~ik-VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQE---GFLK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR 483 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHT---TCCS-EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCC
T ss_pred CeeEECCCCCHHHHHHHHHHHhc---CCCc-EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhccc
Confidence 37789999999999999999996 4555 5889999999999999999999 999 9999999999999999
Q ss_pred hCCCCcEEEEEEecCC
Q 001149 903 YGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 903 iGQ~k~V~VyrLv~~g 918 (1138)
.|+....++|.|+..+
T Consensus 484 ~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 484 RGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp TTTCSSEEEEEEECSC
T ss_pred CCCCCceEEEEEECCC
Confidence 9999889999998866
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.8e-20 Score=242.53 Aligned_cols=135 Identities=18% Similarity=0.134 Sum_probs=99.4
Q ss_pred HHHHHHHhhc-CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCc-c------------------------ccc--CCceEE
Q 001149 782 LLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-K------------------------LWK--KGKDWY 833 (1138)
Q Consensus 782 L~eiL~~~~~-~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~-~------------------------~~~--~Gi~~~ 833 (1138)
+..++..+.. .+.++|||+.+....+.+...|..+....... . .|. ....+.
T Consensus 429 l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~ 508 (1108)
T 3l9o_A 429 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 508 (1108)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCee
Confidence 3344444333 35699999999999999988886421000000 0 000 011278
Q ss_pred EEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcch--------HHHHHHHHHhhCC
Q 001149 834 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY--------DLQAIYRAWRYGQ 905 (1138)
Q Consensus 834 rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~--------~~QAigR~~RiGQ 905 (1138)
.++|+++..+|..+++.|.+ +.++ +|++|.+++.|||+++.+.||.++.+|++.. +.|++||++|.|+
T Consensus 509 ~~Hg~l~~~~R~~v~~~F~~---G~ik-VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~ 584 (1108)
T 3l9o_A 509 IHHSGLLPILKEVIEILFQE---GFLK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 584 (1108)
T ss_dssp EECSCSCHHHHHHHHHHHHH---TCCC-EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSS
T ss_pred eecCCCCHHHHHHHHHHHhC---CCCe-EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCC
Confidence 89999999999999999996 4555 5889999999999999999998888887765 9999999999999
Q ss_pred CCcEEEEEEecCCCH
Q 001149 906 TKPVFAYRLMAHGTM 920 (1138)
Q Consensus 906 ~k~V~VyrLv~~gTi 920 (1138)
....++|.++..+..
T Consensus 585 d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 585 DDRGIVIMMIDEKME 599 (1108)
T ss_dssp CSSEEEEEEECCCCC
T ss_pred CCceEEEEEecCCcC
Confidence 999999999877743
No 42
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=235.50 Aligned_cols=116 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCC
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~ 857 (1138)
|+..|..++... .+.++|||+++....+.+...|.. .|+.+..++|.++..+|..+++.|++ +
T Consensus 320 ~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~------------~~~~v~~lh~~~~~~~R~~~~~~f~~---g 382 (479)
T 3fmp_B 320 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSK------------EGHQVALLSGEMMVEQRAAVIERFRE---G 382 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHh------------CCccEEEecCCCCHHHHHHHHHHHHc---C
Confidence 444455555432 356899999999999999999986 47889999999999999999999996 3
Q ss_pred CceEEEeeccccccCCCcccCCEEEEEcCCCCc------chHHHHHHHHHhhCCCCcEEE
Q 001149 858 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNP------TYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 858 ~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP------~~~~QAigR~~RiGQ~k~V~V 911 (1138)
.++ +||+|.+++.|||+++++.||+||++|++ ..+.|++||++|.|+...+++
T Consensus 383 ~~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 383 KEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred CCc-EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 444 58999999999999999999999999876 589999999999997654443
No 43
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.81 E-value=1.8e-18 Score=218.35 Aligned_cols=342 Identities=15% Similarity=0.115 Sum_probs=210.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.|+|||.+++..++ ..+...|++.++|+|||+++...+...+... .+++|+|+|.. ++.||.+
T Consensus 30 ~l~~~Q~~~i~~~~-------------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~i~P~r~La~q~~~ 93 (715)
T 2va8_A 30 KLNPPQTEAVKKGL-------------LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIYVTPLRALTNEKYL 93 (715)
T ss_dssp BCCHHHHHHHHTTT-------------TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh-------------cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEEEeCcHHHHHHHHH
Confidence 58999999997632 2468899999999999999966665443321 35899999976 7889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.+. .+.+....|...... .+....+|+|+|++.+..+... .......+++||+||
T Consensus 94 ~~~~~~~~---g~~v~~~~G~~~~~~-----~~~~~~~Iiv~Tpe~l~~~~~~------------~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 94 TFKDWELI---GFKVAMTSGDYDTDD-----AWLKNYDIIITTYEKLDSLWRH------------RPEWLNEVNYFVLDE 153 (715)
T ss_dssp HHGGGGGG---TCCEEECCSCSSSCC-----GGGGGCSEEEECHHHHHHHHHH------------CCGGGGGEEEEEECS
T ss_pred HHHHhhcC---CCEEEEEeCCCCCch-----hhcCCCCEEEEcHHHHHHHHhC------------ChhHhhccCEEEEec
Confidence 99666442 245655555322111 1234678999999987643211 011123678999999
Q ss_pred CcccCCc--ccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHH
Q 001149 541 AHMIKNT--RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVK 618 (1138)
Q Consensus 541 aH~iKN~--~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~~ 618 (1138)
+|.+.+. .......+..++..+.++|||||- |..++...+ .... |..+
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~~l---~~~~----------~~~~--------------- 203 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAKRRNLLALSATIS--NYKQIAKWL---GAEP----------VATN--------------- 203 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCT--THHHHHHHH---TCEE----------EECC---------------
T ss_pred hhhcCCcccchHHHHHHHhcccCcEEEEcCCCC--CHHHHHHHh---CCCc----------cCCC---------------
Confidence 9998642 223344455666889999999983 234333222 1110 0000
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHH
Q 001149 619 IMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALA 698 (1138)
Q Consensus 619 ~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~Lr 698 (1138)
.-|-.....+...-.. .
T Consensus 204 ---------------------------~r~~~l~~~~~~~~~~----------------~-------------------- 220 (715)
T 2va8_A 204 ---------------------------WRPVPLIEGVIYPERK----------------K-------------------- 220 (715)
T ss_dssp ---------------------------CCSSCEEEEEEEECSS----------------T--------------------
T ss_pred ---------------------------CCCCCceEEEEecCCc----------------c--------------------
Confidence 0011111111000000 0
Q ss_pred HHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCch
Q 001149 699 QIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGK 778 (1138)
Q Consensus 699 ki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~K 778 (1138)
.+.-+. +... .. ... .....+
T Consensus 221 ----~~~~~~------~~~~-------~~----------------------------------------~~~--~~~~~~ 241 (715)
T 2va8_A 221 ----KEYNVI------FKDN-------TT----------------------------------------KKV--HGDDAI 241 (715)
T ss_dssp ----TEEEEE------ETTS-------CE----------------------------------------EEE--ESSSHH
T ss_pred ----cceeee------cCcc-------hh----------------------------------------hhc--ccchHH
Confidence 000000 0000 00 000 001223
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCC-CCCc-----------cc----------c--cCCceEEE
Q 001149 779 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRP-GKQG-----------KL----------W--KKGKDWYR 834 (1138)
Q Consensus 779 l~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~-~~~~-----------~~----------~--~~Gi~~~r 834 (1138)
+..+.+++ ..+.++|||+......+.+...|...... .... .. . ..+..+..
T Consensus 242 ~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 242 IAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 34444433 46899999999999999999888763211 0000 00 0 00124778
Q ss_pred EeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEE----Ec-------CCCCcchHHHHHHHHHhh
Q 001149 835 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VD-------GSWNPTYDLQAIYRAWRY 903 (1138)
Q Consensus 835 ldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi----~D-------~~WNP~~~~QAigR~~Ri 903 (1138)
++|+++.++|..+.+.|.+ +.++ +|++|.+++.|||+++.+.||. || .+++++...|++||++|.
T Consensus 318 ~h~~l~~~~r~~v~~~f~~---g~~~-vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQ---RKIK-VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHT---TCSC-EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred ECCCCCHHHHHHHHHHHHc---CCCe-EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 9999999999999999996 4455 5899999999999999999998 99 799999999999999999
Q ss_pred CCCCcEEEEEEecCCC
Q 001149 904 GQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 904 GQ~k~V~VyrLv~~gT 919 (1138)
|+.++-.+|+|+....
T Consensus 394 g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 394 GFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTCSCEEEEEECSCGG
T ss_pred CCCCCceEEEEeCCch
Confidence 9999999999987765
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.80 E-value=2.9e-19 Score=224.98 Aligned_cols=335 Identities=17% Similarity=0.140 Sum_probs=211.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.|+|||.+++..+ ..+..+|++.++|.|||+++...+...+.. .+++|+|+|.. ++.||.+
T Consensus 25 ~l~~~Q~~~i~~i--------------~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La~q~~~ 86 (702)
T 2p6r_A 25 ELFPPQAEAVEKV--------------FSGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALAGEKYE 86 (702)
T ss_dssp CCCCCCHHHHHHH--------------TTCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--------------hCCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHHHHHHH
Confidence 5899999999875 246789999999999999986666554432 35899999976 7889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.+|.+. .+++....|...... .+....+|+|+|++.+..+.... ......+++||+||
T Consensus 87 ~~~~~~~~---g~~v~~~~G~~~~~~-----~~~~~~~Iiv~Tpe~l~~~l~~~------------~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 87 SFKKWEKI---GLRIGISTGDYESRD-----EHLGDCDIIVTTSEKADSLIRNR------------ASWIKAVSCLVVDE 146 (702)
T ss_dssp HHTTTTTT---TCCEEEECSSCBCCS-----SCSTTCSEEEEEHHHHHHHHHTT------------CSGGGGCCEEEETT
T ss_pred HHHHHHhc---CCEEEEEeCCCCcch-----hhccCCCEEEECHHHHHHHHHcC------------hhHHhhcCEEEEee
Confidence 99766543 255655555322111 11246789999999886432110 01123678999999
Q ss_pred CcccCC--cccHHHHHHHhc----ccCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCCh
Q 001149 541 AHMIKN--TRADTTQALKQV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 614 (1138)
Q Consensus 541 aH~iKN--~~S~~skal~~l----~~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~ 614 (1138)
+|.+.. ........+..+ ...+.++||||+- +..++.. |+.... |..+
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~----------~~~~----------- 200 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE---WLDADY----------YVSD----------- 200 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH---HTTCEE----------EECC-----------
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH---HhCCCc----------ccCC-----------
Confidence 999865 223333333334 4578899999973 2333332 221110 0000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHH
Q 001149 615 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY 694 (1138)
Q Consensus 615 ~~~~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l 694 (1138)
.-|-..+..+... + ...+. .
T Consensus 201 -------------------------------~r~~~l~~~~~~~--~-----------~~~~~----~------------ 220 (702)
T 2p6r_A 201 -------------------------------WRPVPLVEGVLCE--G-----------TLELF----D------------ 220 (702)
T ss_dssp -------------------------------CCSSCEEEEEECS--S-----------EEEEE----E------------
T ss_pred -------------------------------CCCccceEEEeeC--C-----------eeecc----C------------
Confidence 0010001000000 0 00000 0
Q ss_pred HHHHHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccC
Q 001149 695 QALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 774 (1138)
Q Consensus 695 ~~Lrki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 774 (1138)
+. ......
T Consensus 221 ------------------------------------------~~----------------------------~~~~~~-- 228 (702)
T 2p6r_A 221 ------------------------------------------GA----------------------------FSTSRR-- 228 (702)
T ss_dssp ------------------------------------------TT----------------------------EEEEEE--
T ss_pred ------------------------------------------cc----------------------------hhhhhh--
Confidence 00 000000
Q ss_pred CCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCC---CCCC---------cc----cc--cCCceEEEEe
Q 001149 775 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR---PGKQ---------GK----LW--KKGKDWYRLD 836 (1138)
Q Consensus 775 ~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~---~~~~---------~~----~~--~~Gi~~~rld 836 (1138)
-.+...+.+.+ ..+.++|||+........+...|..... .... .. .. ..+..+..++
T Consensus 229 -~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 229 -VKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp -CCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred -hhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 00333333333 4688999999999988888887764200 0000 00 00 0012356699
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEE----Ec---CCCCcchHHHHHHHHHhhCCCCcE
Q 001149 837 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VD---GSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 837 Gsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi----~D---~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
|+++.++|..+.+.|.+ +.++ +|++|.+++.|||+++.+.||. || .++++....|++||++|.|+.++-
T Consensus 304 ~~l~~~~R~~v~~~f~~---g~~~-vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G 379 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRR---GNIK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERG 379 (702)
T ss_dssp TTSCHHHHHHHHHHHHT---TSCC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred CCCCHHHHHHHHHHHHC---CCCe-EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 99999999999999996 4455 5889999999999999999988 77 689999999999999999999999
Q ss_pred EEEEEecCCCHH
Q 001149 910 FAYRLMAHGTME 921 (1138)
Q Consensus 910 ~VyrLv~~gTiE 921 (1138)
.+|.|+.....+
T Consensus 380 ~~~~l~~~~~~~ 391 (702)
T 2p6r_A 380 EAIIIVGKRDRE 391 (702)
T ss_dssp EEEEECCGGGHH
T ss_pred eEEEEecCccHH
Confidence 999999887654
No 45
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.80 E-value=9.7e-19 Score=220.82 Aligned_cols=336 Identities=18% Similarity=0.116 Sum_probs=212.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.|+|||.+++..++ ..+...|++.++|+|||+++...+...+... .+++|+|+|. .++.||.+
T Consensus 23 ~l~~~Q~~~i~~~~-------------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~ 86 (720)
T 2zj8_A 23 SFYPPQAEALKSGI-------------LEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQ 86 (720)
T ss_dssp BCCHHHHHHHTTTG-------------GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHH
T ss_pred CCCHHHHHHHHHHh-------------cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHH
Confidence 58999999997522 1357899999999999999855444333211 3589999996 67889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.+|.+. .+++..+.+...... .+....+|+|+|++++..+... .......+++||+||
T Consensus 87 ~~~~l~~~---g~~v~~~~G~~~~~~-----~~~~~~~Iiv~Tpe~l~~~~~~------------~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 87 EFQDWEKI---GLRVAMATGDYDSKD-----EWLGKYDIIIATAEKFDSLLRH------------GSSWIKDVKILVADE 146 (720)
T ss_dssp HTGGGGGG---TCCEEEECSCSSCCC-----GGGGGCSEEEECHHHHHHHHHH------------TCTTGGGEEEEEEET
T ss_pred HHHHHHhc---CCEEEEecCCCCccc-----cccCCCCEEEECHHHHHHHHHc------------ChhhhhcCCEEEEEC
Confidence 99766543 255666665332211 1235678999999988543211 011122678999999
Q ss_pred CcccCC--cccHHHHHHHhcc-cCeEEEEecCCCCCChhHHHHHhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 001149 541 AHMIKN--TRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 617 (1138)
Q Consensus 541 aH~iKN--~~S~~skal~~l~-~~~RllLTGTPlqNnl~El~~ll~fL~p~~lg~~~eF~~~f~~pi~~g~~~~s~~~~~ 617 (1138)
+|.+.. ....+...+..++ ..+.++||||+- +..++.. |+.... |..+
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~---~l~~~~----------~~~~-------------- 197 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHMLGKAQIIGLSATIG--NPEELAE---WLNAEL----------IVSD-------------- 197 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHH---HTTEEE----------EECC--------------
T ss_pred CcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHH---HhCCcc----------cCCC--------------
Confidence 999864 2333444445554 678899999973 2333322 221100 0000
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhhcCCCCeEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHH
Q 001149 618 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 697 (1138)
Q Consensus 618 ~~~~~r~~~L~~~L~~~v~Rr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 697 (1138)
.-|-.....+...-
T Consensus 198 ----------------------------~rp~~l~~~~~~~~-------------------------------------- 211 (720)
T 2zj8_A 198 ----------------------------WRPVKLRRGVFYQG-------------------------------------- 211 (720)
T ss_dssp ----------------------------CCSSEEEEEEEETT--------------------------------------
T ss_pred ----------------------------CCCCcceEEEEeCC--------------------------------------
Confidence 00100010000000
Q ss_pred HHHhcCccccccccccCCCCCccccCCCCccccccccccCCCCccchhhhcCCCCCccchhhhhhhhhhcccccccCCCc
Q 001149 698 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 777 (1138)
Q Consensus 698 rki~~hP~ll~~~~~~~~~~~e~~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S~ 777 (1138)
.+.. .. +.. .....
T Consensus 212 -------~~~~-------~~-------------------~~~---------------------------------~~~~~ 225 (720)
T 2zj8_A 212 -------FVTW-------ED-------------------GSI---------------------------------DRFSS 225 (720)
T ss_dssp -------EEEE-------TT-------------------SCE---------------------------------EECSS
T ss_pred -------eeec-------cc-------------------cch---------------------------------hhhhH
Confidence 0000 00 000 00012
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCc-----------cc----------ccCCceEEEEe
Q 001149 778 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-----------KL----------WKKGKDWYRLD 836 (1138)
Q Consensus 778 Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~-----------~~----------~~~Gi~~~rld 836 (1138)
++..+.+++ ..+.++|||+.+....+.+...|.......... .. -.-...+..++
T Consensus 226 ~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 226 WEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp TTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 333444444 357999999999998888888876420000000 00 00012478899
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEE----Ec----CCCCcchHHHHHHHHHhhCCCCc
Q 001149 837 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VD----GSWNPTYDLQAIYRAWRYGQTKP 908 (1138)
Q Consensus 837 Gsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi----~D----~~WNP~~~~QAigR~~RiGQ~k~ 908 (1138)
|+++.++|..+.+.|.+ +.++ +|++|.+++.|||+++.+.||. || .++++....|++||++|.|+.++
T Consensus 302 ~~l~~~~R~~v~~~f~~---g~~~-vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~ 377 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRK---GIIK-AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV 377 (720)
T ss_dssp TTSCHHHHHHHHHHHHT---TSSC-EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSE
T ss_pred CCCCHHHHHHHHHHHHC---CCCe-EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCC
Confidence 99999999999999996 4455 5889999999999999998887 77 58899999999999999999999
Q ss_pred EEEEEEecCCCHHH
Q 001149 909 VFAYRLMAHGTMEE 922 (1138)
Q Consensus 909 V~VyrLv~~gTiEe 922 (1138)
-.+|.|+.....+.
T Consensus 378 G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 378 GEGIIVSTSDDPRE 391 (720)
T ss_dssp EEEEEECSSSCHHH
T ss_pred ceEEEEecCccHHH
Confidence 99999998887554
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.80 E-value=3.2e-18 Score=221.28 Aligned_cols=146 Identities=15% Similarity=0.056 Sum_probs=109.7
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCc-------------c--------------cccC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-------------K--------------LWKK 828 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~-------------~--------------~~~~ 828 (1138)
..++..|++.|.. ....++|||+.+....+.+...|..+....... . ....
T Consensus 321 ~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 321 KKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp TTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 3466677777765 345799999999999999988887532110000 0 0000
Q ss_pred CceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCCcccCCEEEEEcCCC---------CcchHHHHHHH
Q 001149 829 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW---------NPTYDLQAIYR 899 (1138)
Q Consensus 829 Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~W---------NP~~~~QAigR 899 (1138)
+..+..++|+++..+|+.+++.|.. +.++ +|++|.+.+.|||+++ ..||+++.++ ++..+.|++||
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~---G~~k-VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GR 473 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSK---GFIK-VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGR 473 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHT---TCCS-EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGG
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHC---CCCc-EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcc
Confidence 2246788999999999999999996 4455 5899999999999999 7777755554 89999999999
Q ss_pred HHhhCCCCcEEEEEEecCCCHHHHHHHHH
Q 001149 900 AWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 928 (1138)
Q Consensus 900 ~~RiGQ~k~V~VyrLv~~gTiEekI~~rq 928 (1138)
++|.|+...-++|.+...+..+...+...
T Consensus 474 AGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 474 AGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp GCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred cccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 99999999999998887666666655443
No 47
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.79 E-value=4.4e-18 Score=218.98 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=109.0
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC-cchHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P-~sll~qW~ 459 (1138)
..++|||..||.++++.+.....+......+.+|++.+.||+|||++++.++. ++... ....++||||| ..|..||.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~-ll~~~-~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAAR-LATEL-DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHH-HHTTC-TTCCEEEEEECGGGCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHH-HHHhc-CCCceEEEEeCcHHHHHHHH
Confidence 35899999999999876543321111112347899999999999999876653 33321 22468999999 56888999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++|.+|.+..+ ..+.+.......+. ....+|+|+|++.|........ .......+++||+|
T Consensus 348 ~~f~~f~~~~v-------~~~~s~~~l~~~L~--~~~~~IiVtTiqkl~~~l~~~~----------~~~~~~~~~lvIiD 408 (1038)
T 2w00_A 348 KEYQRFSPDSV-------NGSENTAGLKRNLD--KDDNKIIVTTIQKLNNLMKAES----------DLPVYNQQVVFIFD 408 (1038)
T ss_dssp HHHHTTSTTCS-------SSSCCCHHHHHHHH--CSSCCEEEEEHHHHHHHHHHCC----------CCGGGGSCEEEEEE
T ss_pred HHHHHhccccc-------ccccCHHHHHHHhc--CCCCCEEEEEHHHHHHHHhccc----------chhccccccEEEEE
Confidence 99999986421 11112111111111 2457899999999864210000 00011267899999
Q ss_pred CCcccCCcccHHHHHH-HhcccCeEEEEecCCCCC
Q 001149 540 EAHMIKNTRADTTQAL-KQVKCQRRIALTGSPLQN 573 (1138)
Q Consensus 540 EaH~iKN~~S~~skal-~~l~~~~RllLTGTPlqN 573 (1138)
|||+.... ...+.+ ..+....+++|||||+..
T Consensus 409 EAHrs~~~--~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 409 ECHRSQFG--EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp SCCTTHHH--HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred ccchhcch--HHHHHHHHhCCcccEEEEeCCcccc
Confidence 99997532 233333 456778999999999853
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.73 E-value=1.4e-16 Score=207.72 Aligned_cols=158 Identities=11% Similarity=0.136 Sum_probs=106.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.+.|+|.+++..++ .+...|+...+|.|||+.++..+...+. ....+|||+|.. |+.|+.+
T Consensus 78 ~pt~iQ~~ai~~il--------------~g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIV--------------QGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp CCCHHHHHHHHHHT--------------TTCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------------cCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHH
Confidence 36799999998763 3578999999999999966555544442 245899999965 6779999
Q ss_pred HHHHHCCCCCCCeEEEEecCcc-hhHHHHHHHHHhhc-CCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~-~~~r~~~l~~~~~~-~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
+|.++.. ..+++..+++.. ...+...+..+... .+|+|+|++.+.... ..+....+++||+
T Consensus 140 ~l~~l~~---~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l--------------~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 140 RLQKLAD---EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR--------------EKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHTTSC---TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH--------------HHHHTSCCSEEEE
T ss_pred HHHHhhC---CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH--------------HhhcccCcCEEEE
Confidence 9999762 236777776654 33444444445443 789999998874321 1122348999999
Q ss_pred cCCcccCCc-------------ccH-HHHHHHhc------------ccCeEEEEecCCCCCC
Q 001149 539 DEAHMIKNT-------------RAD-TTQALKQV------------KCQRRIALTGSPLQNN 574 (1138)
Q Consensus 539 DEaH~iKN~-------------~S~-~skal~~l------------~~~~RllLTGTPlqNn 574 (1138)
||||.+-.. ... +..++..+ .....+++||||....
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~ 264 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRG 264 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCS
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHH
Confidence 999986431 112 33344433 3457899999986544
No 49
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.71 E-value=2.1e-17 Score=184.69 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=120.1
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~ 459 (1138)
..|+|||.+++.+++.. .++||+++||+|||+++++++...+..+ .+++|||||. .|+.||.
T Consensus 112 ~~l~~~Q~~ai~~~l~~--------------~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~ 174 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN--------------RRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMA 174 (282)
T ss_dssp CCCCHHHHHHHHHHHHH--------------SEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc--------------CCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHH
Confidence 37999999999987642 5689999999999999988877765432 3489999996 6888999
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
+++.+|.... ...+..+.+...... .......|+|+||+.+.... ......+++||+|
T Consensus 175 ~~l~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~~---------------~~~~~~~~~vIiD 232 (282)
T 1rif_A 175 DDFVDYRLFS--HAMIKKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQP---------------KEWFSQFGMMMND 232 (282)
T ss_dssp HHHHHHTSCC--GGGEEECSTTCSSTT-----CCCTTCSEEEECHHHHTTSC---------------GGGGGGEEEEEEE
T ss_pred HHHHHhcccc--cceEEEEeCCCcchh-----hhccCCcEEEEchHHHHhhH---------------HHHHhhCCEEEEE
Confidence 9999996531 234444443322111 11245789999999875321 0112367999999
Q ss_pred CCcccCCcccHHHHHHHhc-ccCeEEEEecCCCCCChhHHHHHhhhhcc
Q 001149 540 EAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVRE 587 (1138)
Q Consensus 540 EaH~iKN~~S~~skal~~l-~~~~RllLTGTPlqNnl~El~~ll~fL~p 587 (1138)
|||++.+. .....+..+ ...++++|||||- |...+++.++.++.|
T Consensus 233 EaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 233 ECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp TGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred CCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 99999854 455566666 6899999999995 556788888887765
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.66 E-value=1.3e-15 Score=198.67 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQE 461 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~E 461 (1138)
+ |+|.+++..++ .+...|+..++|.|||+.++.++..+.. ....+|||+|.. |+.|+.++
T Consensus 58 p-~iQ~~ai~~il--------------~g~dvlv~apTGSGKTl~~lp~l~~~~~----~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 58 R-AIQKMWAKRIL--------------RKESFAATAPTGVGKTSFGLAMSLFLAL----KGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp C-HHHHHHHHHHH--------------TTCCEECCCCBTSCSHHHHHHHHHHHHT----TSCCEEEEESCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHH--------------hCCCEEEEcCCCCCHHHHHHHHHHHHhh----cCCeEEEEeccHHHHHHHHHH
Confidence 6 99999998764 3478999999999999855554444332 235899999965 67799999
Q ss_pred HHHHCCCCCCCe----EEEEecCcch-hHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEE
Q 001149 462 FMKWRPSELKPL----RVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 536 (1138)
Q Consensus 462 ~~kw~p~~~~~l----~V~~~~~~~~-~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlV 536 (1138)
+.+++... .+ .+..+.+... ..+......... .+|+|+|++.+..... . + ..+++|
T Consensus 119 l~~l~~~~--~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~--------------~-L-~~l~~l 179 (1054)
T 1gku_B 119 IRKYAEKA--GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYR--------------E-L-GHFDFI 179 (1054)
T ss_dssp HHHHHTTT--CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCST--------------T-S-CCCSEE
T ss_pred HHHHHhhc--CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHH--------------H-h-ccCCEE
Confidence 99987642 23 5666665443 333333344444 8999999998764321 0 1 278899
Q ss_pred EEcCCcccCCcccHHHHHHHhc------------ccCeEEEEecCCC
Q 001149 537 VCDEAHMIKNTRADTTQALKQV------------KCQRRIALTGSPL 571 (1138)
Q Consensus 537 IlDEaH~iKN~~S~~skal~~l------------~~~~RllLTGTPl 571 (1138)
|+||||++-+........+..+ .....+++|||+-
T Consensus 180 ViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t 226 (1054)
T 1gku_B 180 FVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTAT 226 (1054)
T ss_dssp EESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCC
T ss_pred EEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCC
Confidence 9999999876544444444444 1234577787764
No 51
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.66 E-value=6.9e-16 Score=159.64 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=108.6
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...+.|+..|.++|... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+
T Consensus 13 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~hg~~~~~~r~~~~~~f~ 78 (172)
T 1t5i_A 13 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVE------------QNFPAIAIHRGMPQEERLSRYQQFK 78 (172)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHh------------cCCCEEEEECCCCHHHHHHHHHHHH
Confidence 44578999999999874 568999999999999999999987 5889999999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 911 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~V 911 (1138)
+ +.++ +|++|.+++.|+|++++++||+||++||+..+.|++||++|.|+...+++
T Consensus 79 ~---g~~~-vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 79 D---FQRR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp T---TSCS-EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred C---CCCc-EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 6 3444 58899999999999999999999999999999999999999998765544
No 52
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.63 E-value=7.8e-16 Score=157.72 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=113.5
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...+.|+..|.++|... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..++++|+
T Consensus 17 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 17 VREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDD------------LGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHH------------cCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34578999999999874 568999999999999999999987 5889999999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHHHHHHHH
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKR 927 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiEekI~~r 927 (1138)
++ .++ +|++|.++++|+|+++++.||+||++||+..+.|++||++|.||...+ |.|+... |...+..
T Consensus 83 ~g---~~~-vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~ 149 (163)
T 2hjv_A 83 RG---EYR-YLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLAD 149 (163)
T ss_dssp TT---SCS-EEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHH
T ss_pred cC---CCe-EEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHH
Confidence 63 444 578999999999999999999999999999999999999999987555 4455443 4444443
No 53
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=167.04 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=97.1
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...+.|+..|.++|.... .+.|+|||+++...++.|...|.. .|+.+..++|+++..+|..+++.|+
T Consensus 27 v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~------------~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYH------------EGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHH------------TTCCEEEEC--------CHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHH------------cCCceEEEeCCCCHHHHHHHHHHHH
Confidence 456789999999998743 578999999999999999999986 5889999999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
+ +.++ +|++|.+++.|+|++.++.||+||++||+..+.|++||++|.|++.. +|.|+...
T Consensus 94 ~---g~~~-vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 94 S---GKSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp H---TSSS-EEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred c---CCCe-EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 6 3444 58899999999999999999999999999999999999999998644 44555543
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.61 E-value=3.3e-15 Score=177.15 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=83.7
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
+.++|||+......+.+...|.. .|+.+..++|. +|+++++.|.+ +.++ +|++|.+.+.|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~------------~~~~v~~lhg~----~r~~~~~~f~~---g~~~-vLVaT~v~e~G 230 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQK------------AGKKVLYLNRK----TFESEYPKCKS---EKWD-FVITTDISEMG 230 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHH------------TTCCEEEESTT----THHHHTTHHHH---SCCS-EEEECGGGGTS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH------------cCCeEEEeCCc----cHHHHHHhhcC---CCCe-EEEECchHHcC
Confidence 56899999999999999999987 47889999997 68889999986 3444 58999999999
Q ss_pred CCcccCCE-----------------EEEEcCCCCcchHHHHHHHHHhhCCCC-cEEEE
Q 001149 873 INLHSANR-----------------VIIVDGSWNPTYDLQAIYRAWRYGQTK-PVFAY 912 (1138)
Q Consensus 873 LNLt~An~-----------------VIi~D~~WNP~~~~QAigR~~RiGQ~k-~V~Vy 912 (1138)
||+. ..+ ||.++.+.++....|++||++|.|... .+++|
T Consensus 231 iDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 231 ANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 9998 544 577889999999999999999999654 44444
No 55
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.60 E-value=5e-15 Score=161.32 Aligned_cols=140 Identities=17% Similarity=0.162 Sum_probs=104.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHH
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 458 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW 458 (1138)
...|+|||.+++..+++ +..+|++.+||+|||+++++++... .+++|||||. .++.||
T Consensus 91 ~~~l~~~Q~~ai~~~~~--------------~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~ 149 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV--------------DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQW 149 (237)
T ss_dssp CCCCCHHHHHHHHHHTT--------------TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh--------------CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHH
Confidence 45799999999987632 2459999999999999998887653 3689999997 788899
Q ss_pred HHHHHHHCCCCCCCeE-EEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 459 KQEFMKWRPSELKPLR-VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~-V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
.+++.+| + +. +..+.+... ...+|+|+||+.+.... ..+...|++||
T Consensus 150 ~~~~~~~-~-----~~~v~~~~g~~~-----------~~~~i~v~T~~~l~~~~---------------~~~~~~~~llI 197 (237)
T 2fz4_A 150 KERLGIF-G-----EEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNA---------------EKLGNRFMLLI 197 (237)
T ss_dssp HHHHGGG-C-----GGGEEEESSSCB-----------CCCSEEEEEHHHHHHTH---------------HHHTTTCSEEE
T ss_pred HHHHHhC-C-----CCeEEEEeCCCC-----------CcCCEEEEeHHHHHhhH---------------HHhcccCCEEE
Confidence 9999994 2 34 555555432 24679999998865310 12234699999
Q ss_pred EcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCC
Q 001149 538 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 574 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNn 574 (1138)
+||+|++.+.. ..+.+..+...++++|||||.+++
T Consensus 198 iDEaH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 198 FDEVHHLPAES--YVQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp EECSSCCCTTT--HHHHHHTCCCSEEEEEEESCC---
T ss_pred EECCccCCChH--HHHHHHhccCCEEEEEecCCCCCC
Confidence 99999997653 345566678999999999998764
No 56
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.58 E-value=2.8e-15 Score=153.77 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=105.6
Q ss_pred Cc-hHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC
Q 001149 776 SG-KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 854 (1138)
Q Consensus 776 S~-Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~ 854 (1138)
.. |+..|.+++... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 14 ~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~- 78 (165)
T 1fuk_A 14 EEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRN------------DKFTVSAIYSDLPQQERDTIMKEFRS- 78 (165)
T ss_dssp GGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHT-
T ss_pred chhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHH------------cCCCEEEEECCCCHHHHHHHHHHHHc-
Confidence 44 999999999874 568999999999999999999986 57899999999999999999999996
Q ss_pred CCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCH
Q 001149 855 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 920 (1138)
Q Consensus 855 ~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTi 920 (1138)
+.++ +|++|.+++.|+|+++++.||+||++|++..+.|++||++|.|+...+ |.|+.....
T Consensus 79 --g~~~-vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 79 --GSSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp --TSCS-EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred --CCCE-EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 3444 578999999999999999999999999999999999999999977654 456666543
No 57
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=158.17 Aligned_cols=125 Identities=26% Similarity=0.326 Sum_probs=106.2
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...+.|+..|.++|.. .+.|+|||+++...++.+..+|.. .|+.+..++|+++..+|..+++.|+
T Consensus 37 ~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~------------~g~~~~~lhg~~~~~~R~~~l~~F~ 101 (191)
T 2p6n_A 37 VKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLL------------KGVEAVAIHGGKDQEERTKAIEAFR 101 (191)
T ss_dssp CCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHH------------HTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHH------------cCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 3456799999988875 367999999999999999999986 5889999999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
+ +.++ +|++|.+++.|||++.++.||+||++||+..+.|++||++|.|++..+ +.|+...
T Consensus 102 ~---g~~~-vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 102 E---GKKD-VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp H---TSCS-EEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred c---CCCE-EEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 6 3444 588999999999999999999999999999999999999999997654 4455543
No 58
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.55 E-value=7.5e-15 Score=174.48 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+.++|||+......+.+...|.. .|+....++| ++|.++++.|++ +.++ +|++|.+.+.
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~------------~~~~v~~lhg----~~R~~~~~~F~~---g~~~-vLVaT~v~e~ 235 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRK------------AGKSVVVLNR----KTFEREYPTIKQ---KKPD-FILATDIAEM 235 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHH------------TTCCEEECCS----SSCC-----------CCCS-EEEESSSTTC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHH------------cCCCEEEecc----hhHHHHHhhhcC---CCce-EEEECChhhe
Confidence 378999999999999999999987 4788999999 368899999986 3444 5899999999
Q ss_pred CCCcccCCEEEE-------------------EcCCCCcchHHHHHHHHHhhCC
Q 001149 872 GINLHSANRVII-------------------VDGSWNPTYDLQAIYRAWRYGQ 905 (1138)
Q Consensus 872 GLNLt~An~VIi-------------------~D~~WNP~~~~QAigR~~RiGQ 905 (1138)
|||+. ++.||+ +|.+.++..+.|++||++|.|.
T Consensus 236 GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 236 GANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred eeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 99999 999985 8999999999999999999853
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.55 E-value=5.9e-15 Score=175.97 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=84.0
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
+.++|||++.....+.+...|.. .|+....++|.+ ++++++.|++ +.++ +|++|.+.+.|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~------------~g~~~~~lh~~~----~~~~~~~f~~---g~~~-vLVaT~v~~~G 247 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRK------------SGKRVIQLSRKT----FDTEYPKTKL---TDWD-FVVTTDISEMG 247 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT------------TTCCEEEECTTT----HHHHGGGGGS---SCCS-EEEECGGGGSS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH------------cCCeEEECCHHH----HHHHHHhhcc---CCce-EEEECCHHHhC
Confidence 56899999999999999999986 578899999975 4678999986 3444 58999999999
Q ss_pred CCcccCCEEEEEc--------------------CCCCcchHHHHHHHHHhhCCC-CcEEE
Q 001149 873 INLHSANRVIIVD--------------------GSWNPTYDLQAIYRAWRYGQT-KPVFA 911 (1138)
Q Consensus 873 LNLt~An~VIi~D--------------------~~WNP~~~~QAigR~~RiGQ~-k~V~V 911 (1138)
||+.+ +.||.|| ++.++..+.|++||++|.|.. ..+++
T Consensus 248 iDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~ 306 (451)
T 2jlq_A 248 ANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306 (451)
T ss_dssp CCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred cCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEE
Confidence 99999 9999988 888999999999999999984 34433
No 60
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=147.92 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
.|+.+|.+++... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~~g~~~~~~R~~~~~~f~~--- 82 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQ------------DGHQVSLLSGELTVEQRASIIQRFRD--- 82 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHT------------TTCCEEEECSSCCHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHH------------cCCcEEEEeCCCCHHHHHHHHHHHHc---
Confidence 4999999998864 467999999999999999999986 58899999999999999999999996
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcCC------CCcchHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDGS------WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~------WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
+.++ +|++|.+++.|+|++.++.||+||++ +++..+.|++||++|.|+. -.+|.|+..+.
T Consensus 83 g~~~-vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 83 GKEK-VLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp TSCS-EEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred CCCe-EEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 3444 58899999999999999999999999 5667899999999999964 45677776654
No 61
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.53 E-value=1.3e-14 Score=173.41 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccC
Q 001149 793 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 872 (1138)
Q Consensus 793 g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~G 872 (1138)
+.++|||+.+....+.+...|.. .|+.+..++|. +|..+++.|++ +.++ +|++|.+++.|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~------------~g~~v~~lh~~----~R~~~~~~f~~---g~~~-iLVaT~v~~~G 249 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQR------------AGKKVIQLNRK----SYDTEYPKCKN---GDWD-FVITTDISEMG 249 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH------------TTCCEEEESTT----CCCCCGGGSSS---CCCS-EEEESSCC---
T ss_pred CCCEEEEeCChHHHHHHHHHHHh------------cCCcEEecCHH----HHHHHHhhccC---CCce-EEEECChHHhC
Confidence 67999999999999999999987 47889999985 67889999986 3444 58999999999
Q ss_pred CCcccCCEEEE--------------------EcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 873 INLHSANRVII--------------------VDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 873 LNLt~An~VIi--------------------~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
||+.+ +.||. ||++.++..+.|++||++|.|.... ..|.|+...
T Consensus 250 iDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 250 ANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred eecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 99999 99998 7899999999999999999996322 344556554
No 62
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.28 E-value=7.7e-16 Score=158.85 Aligned_cols=119 Identities=23% Similarity=0.342 Sum_probs=106.3
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
+.|+.+|.+++.. ..+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~------------~~~~~~~~~g~~~~~~r~~~~~~f~~-- 78 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLRE------------AGINNCYLEGEMVQGKRNEAIKRLTE-- 78 (170)
Confidence 6799999999886 3568999999999999999999986 57889999999999999999999996
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 912 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~Vy 912 (1138)
+.++ +|++|.+++.|+|++++++||+||++||+..+.|++||++|.||...++++
T Consensus 79 -g~~~-vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 79 -GRVN-VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 3444 688999999999999999999999999999999999999999998666443
No 63
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.51 E-value=3.2e-14 Score=176.59 Aligned_cols=97 Identities=22% Similarity=0.203 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+.++|||+......+.+...|.. .|+.+..++|. +|+++++.|.+ +.++ +|++|.+.+.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~------------~g~~v~~lHg~----eR~~v~~~F~~---g~~~-VLVaTdv~e~ 468 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQR------------AGKRVIQLNRK----SYDTEYPKCKN---GDWD-FVITTDISEM 468 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHT------------TTCCEEEECSS----SHHHHGGGGGT---CCCS-EEEECGGGGT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh------------CCCeEEEeChH----HHHHHHHHHHC---CCce-EEEECchhhc
Confidence 478999999999999999999986 47889999994 79999999996 3444 5899999999
Q ss_pred CCCcccCCEEEE--------------------EcCCCCcchHHHHHHHHHhhC-CCCcE
Q 001149 872 GINLHSANRVII--------------------VDGSWNPTYDLQAIYRAWRYG-QTKPV 909 (1138)
Q Consensus 872 GLNLt~An~VIi--------------------~D~~WNP~~~~QAigR~~RiG-Q~k~V 909 (1138)
|||+. +++||+ ||++.++..+.|++||++|.| +.-.+
T Consensus 469 GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a 526 (673)
T 2wv9_A 469 GANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE 526 (673)
T ss_dssp TCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE
T ss_pred ceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE
Confidence 99999 999997 567888899999999999994 44333
No 64
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.49 E-value=6.8e-14 Score=149.70 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=109.0
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...+.|+.+|.+++... .+.++|||+++....+.+...|.. .|+.+..++|+++..+|..+++.|+
T Consensus 13 ~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~lhg~~~~~~r~~~~~~f~ 78 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLR------------LGHPAQALHGDLSQGERERVLGAFR 78 (212)
T ss_dssp CCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHH------------HTCCEEEECSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHH------------cCCCEEEEECCCCHHHHHHHHHHHH
Confidence 34578999999999853 478999999999999999999986 5889999999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
+ +.++ +|++|.+++.|||+++++.||+||++|++..+.|++||++|.|+.. .+|.|+...
T Consensus 79 ~---g~~~-vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 79 Q---GEVR-VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp S---SSCC-EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred C---CCCe-EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 6 3455 5889999999999999999999999999999999999999999764 445556543
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.48 E-value=6e-13 Score=164.85 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=93.7
Q ss_pred eEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeeccccccCCC
Q 001149 795 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 874 (1138)
Q Consensus 795 KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~GLN 874 (1138)
..|||+.....++.+...|.. .|+.+..++|+++..+|..+++.|+++ .+.++ +|++|.+++.|||
T Consensus 322 g~iIf~~s~~~ie~la~~L~~------------~g~~v~~lHG~L~~~~R~~~~~~F~~~-~g~~~-VLVATdi~e~GlD 387 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEI------------RGLESAVIYGSLPPGTKLAQAKKFNDP-NDPCK-ILVATDAIGMGLN 387 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHCT-TSSCC-EEEECGGGGSSCC
T ss_pred CCEEEEcCHHHHHHHHHHHHh------------cCCCeeeeeccCCHHHHHHHHHHHHcc-CCCeE-EEEeCcHHHCCcC
Confidence 347888889999999999986 478899999999999999999999973 23454 5899999999999
Q ss_pred cccCCEEEEEcC--------------CCCcchHHHHHHHHHhhCCC-CcEEEEEEecC
Q 001149 875 LHSANRVIIVDG--------------SWNPTYDLQAIYRAWRYGQT-KPVFAYRLMAH 917 (1138)
Q Consensus 875 Lt~An~VIi~D~--------------~WNP~~~~QAigR~~RiGQ~-k~V~VyrLv~~ 917 (1138)
+ .+++||+++. +++++...|++||++|.|+. .+-++|.+...
T Consensus 388 i-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 388 L-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred c-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 9 9999999999 88999999999999999987 56778877654
No 66
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.47 E-value=2.9e-13 Score=167.48 Aligned_cols=114 Identities=21% Similarity=0.185 Sum_probs=98.8
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+.+|.+.|......+.++|||+.+....+.|...|.. .|+....++|.....+|..+..+|+.
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~------------~gi~~~vLhg~~~~rEr~ii~~ag~~-- 480 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN------------KGIPHQVLNAKNHEREAQIIEEAGQK-- 480 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT------------TTCCCEEECSSCHHHHHHHHTTTTST--
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH------------CCCCEEEeeCCccHHHHHHHHHcCCC--
Confidence 4689999999887766788999999999999999999996 68999999999876666545445543
Q ss_pred CCCceEEEeeccccccCCCcc--------cCCEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001149 856 NKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTK 907 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt--------~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k 907 (1138)
+. ++|+|.++|.|+++. +..+||.||.|-++..+.|++||++|.|..-
T Consensus 481 -g~---VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 481 -GA---VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp -TC---EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred -Ce---EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 22 599999999999999 7889999999999999999999999999873
No 67
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.46 E-value=1.8e-13 Score=168.70 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+.++|||+......+.+...|.. .|+....++|. +|.++++.|++ +.++ +|++|.+++.
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~------------~g~~v~~lhg~----~R~~~l~~F~~---g~~~-VLVaTdv~~r 413 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRK------------SGKRVIQLSRK----TFDTEYPKTKL---TDWD-FVVTTDISEM 413 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTT----THHHHTTHHHH---SCCS-EEEECGGGGT
T ss_pred CCCCEEEEECChhHHHHHHHHHHH------------cCCcEEEEChH----HHHHHHHhhcC---CCcE-EEEECcHHHc
Confidence 367999999999999999999997 57889999984 78889999986 3444 5899999999
Q ss_pred CCCcccCCEE--------------------EEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEec
Q 001149 872 GINLHSANRV--------------------IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 916 (1138)
Q Consensus 872 GLNLt~An~V--------------------Ii~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~ 916 (1138)
|||+. +++| |+||++-++..+.|++||++|.|..+.. .|.|+.
T Consensus 414 GiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 414 GANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp TCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred CcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 99996 8888 6777788888999999999999864433 455665
No 68
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.46 E-value=8.5e-13 Score=166.72 Aligned_cols=124 Identities=17% Similarity=0.074 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC--CCCCceEEEeecccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP--LNKRVKCTLISTRAG 869 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~--~n~~v~v~LiSTkaG 869 (1138)
.+.++|||+.....++.+...|...... ........++.+..++|+++.++|..+++.|... .++..+ +|++|.++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~-l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~ia 379 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQ-LVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIA 379 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHH-HHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHh-hcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHH
Confidence 4789999999999999988888731000 0000001478899999999999999999999711 023444 68999999
Q ss_pred ccCCCcccCCEEEEEcC------------------CCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCH
Q 001149 870 SLGINLHSANRVIIVDG------------------SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 920 (1138)
Q Consensus 870 g~GLNLt~An~VIi~D~------------------~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTi 920 (1138)
+.|||+.+.+.||.++. +.+.....|++||++|. ++=.+|+|+++...
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999999655 77889999999999998 45578888865443
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.46 E-value=1.1e-11 Score=154.19 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCC
Q 001149 777 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 856 (1138)
Q Consensus 777 ~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n 856 (1138)
+++..|+..|......+.++|||+......+.|..+|.. .|+....++|.++..+|..+++.|.+
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~------------~gi~~~~lh~~~~~~~R~~~l~~f~~--- 493 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE------------IGIKVNYLHSEIKTLERIEIIRDLRL--- 493 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTCCHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh------------cCCCeEEEeCCCCHHHHHHHHHHHhc---
Confidence 456666677777767789999999999999999999997 57888999999999999999999986
Q ss_pred CCceEEEeeccccccCCCcccCCEEEEEcC-----CCCcchHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 857 KRVKCTLISTRAGSLGINLHSANRVIIVDG-----SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 857 ~~v~v~LiSTkaGg~GLNLt~An~VIi~D~-----~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
+.+. +|++|.+.+.|+|+..++.||++|. ++++..+.|++||++|.+ +-.++.|+...+
T Consensus 494 g~~~-VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 494 GKYD-VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp TSCS-EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred CCeE-EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 4454 6899999999999999999999998 899999999999999972 334556776654
No 70
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.46 E-value=6.7e-12 Score=155.14 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=98.7
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+.+|.+.+......|..||||+.+....+.|...|.. .|++...++|.....+|..+..+|+.
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~------------~Gi~~~vLnak~~~rEa~iia~agr~-- 508 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK------------RRIPHNVLNAKYHEQEATIIAVAGRR-- 508 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH------------TTCCCEEECSSCHHHHHHHHHTTTST--
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH------------CCCCEEEecCChhHHHHHHHHhcCCC--
Confidence 4699999999988777899999999999999999999997 68999999999876666556666764
Q ss_pred CCCceEEEeeccccccCCCcccC----------------------------------------------------CEEEE
Q 001149 856 NKRVKCTLISTRAGSLGINLHSA----------------------------------------------------NRVII 883 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~A----------------------------------------------------n~VIi 883 (1138)
+. ++|+|..+|.|+++... .+||.
T Consensus 509 -G~---VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~ 584 (922)
T 1nkt_A 509 -GG---VTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG 584 (922)
T ss_dssp -TC---EEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE
T ss_pred -Ce---EEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe
Confidence 32 59999999999998853 59999
Q ss_pred EcCCCCcchHHHHHHHHHhhCCCC
Q 001149 884 VDGSWNPTYDLQAIYRAWRYGQTK 907 (1138)
Q Consensus 884 ~D~~WNP~~~~QAigR~~RiGQ~k 907 (1138)
+|.+-++..+.|++||++|.|..-
T Consensus 585 te~pes~riy~qr~GRTGRqGdpG 608 (922)
T 1nkt_A 585 TERHESRRIDNQLRGRSGRQGDPG 608 (922)
T ss_dssp CSCCSSHHHHHHHHHTSSGGGCCE
T ss_pred ccCCCCHHHHHHHhcccccCCCCe
Confidence 999999999999999999999863
No 71
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.45 E-value=5.9e-13 Score=164.31 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|+.+|.+.|..+...|..||||+.+....+.|...|.. .|++...++|.....+|..+..+|+.
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~------------~gi~~~vLnak~~~rEa~iia~agr~-- 489 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTK------------AGIKHNVLNAKFHANEAAIVAQAGYP-- 489 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH------------TTCCCEECCTTCHHHHHHHHHTTTST--
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHH------------CCCCEEEecCChhHHHHHHHHhcCCC--
Confidence 5699999999988777899999999999999999999997 68999999999877777666677775
Q ss_pred CCCceEEEeeccccccCCCcccC-------------------------------------CEEEEEcCCCCcchHHHHHH
Q 001149 856 NKRVKCTLISTRAGSLGINLHSA-------------------------------------NRVIIVDGSWNPTYDLQAIY 898 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~A-------------------------------------n~VIi~D~~WNP~~~~QAig 898 (1138)
+. ++|+|..+|.|+++... .+||.+|.+-++..+.|++|
T Consensus 490 -G~---VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~G 565 (853)
T 2fsf_A 490 -AA---VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRG 565 (853)
T ss_dssp -TC---EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHT
T ss_pred -Ce---EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhcc
Confidence 32 69999999999999852 59999999999999999999
Q ss_pred HHHhhCCCCc
Q 001149 899 RAWRYGQTKP 908 (1138)
Q Consensus 899 R~~RiGQ~k~ 908 (1138)
|++|.|..-.
T Consensus 566 RTGRqGd~G~ 575 (853)
T 2fsf_A 566 RSGRQGDAGS 575 (853)
T ss_dssp TSSGGGCCEE
T ss_pred ccccCCCCee
Confidence 9999998733
No 72
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.45 E-value=3.5e-12 Score=172.38 Aligned_cols=166 Identities=16% Similarity=0.172 Sum_probs=104.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.+.|.|.+++.-++ ..+.+.+++..+|.|||+.+...|...+.... .+++|+|+|. .|+.|=.+
T Consensus 926 ~fnpiQ~q~~~~l~-------------~~~~nvlv~APTGSGKTliaelail~~l~~~~--~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY-------------NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS--EGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp BCCHHHHHHHHHHH-------------SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh-------------cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC--CCEEEEEcChHHHHHHHHH
Confidence 35688999987775 35678999999999999988666665554432 3579999995 56666666
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.+.+... ..++|..+.|...... .+....+|+|+|++.+..+.... ..... -....+||+||
T Consensus 991 ~~~~~f~~~-~g~~V~~ltGd~~~~~-----~~~~~~~IiV~TPEkld~llr~~--~~~~~--------l~~v~lvViDE 1054 (1724)
T 4f92_B 991 DWYEKFQDR-LNKKVVLLTGETSTDL-----KLLGKGNIIISTPEKWDILSRRW--KQRKN--------VQNINLFVVDE 1054 (1724)
T ss_dssp HHHHHHTTT-SCCCEEECCSCHHHHH-----HHHHHCSEEEECHHHHHHHHTTT--TTCHH--------HHSCSEEEECC
T ss_pred HHHHHhchh-cCCEEEEEECCCCcch-----hhcCCCCEEEECHHHHHHHHhCc--ccccc--------cceeeEEEeec
Confidence 665433221 1367777776543221 22356789999999876543210 11111 12678999999
Q ss_pred CcccCCcccHHHH-HHHhc--------ccCeEEEEecCCCCCChhHHHH
Q 001149 541 AHMIKNTRADTTQ-ALKQV--------KCQRRIALTGSPLQNNLMEYYC 580 (1138)
Q Consensus 541 aH~iKN~~S~~sk-al~~l--------~~~~RllLTGTPlqNnl~El~~ 580 (1138)
+|.+......... .+..+ ...+.++||||- .|..|+..
T Consensus 1055 ~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~ 1101 (1724)
T 4f92_B 1055 VHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAH 1101 (1724)
T ss_dssp GGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHH
T ss_pred hhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHH
Confidence 9999754332222 22222 245779999994 34555544
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.45 E-value=5.9e-13 Score=140.86 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=107.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc--ccCCCceEEEeCc-chHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV--NLGLRTALIVTPV-NVLHNW 458 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~--~~~~k~vLIV~P~-sll~qW 458 (1138)
.++|||.+++..+. .+..+|+..++|+|||++++..+...+... .....++|||||. .++.||
T Consensus 23 ~~~~~Q~~~i~~~~--------------~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~ 88 (207)
T 2gxq_A 23 TPTPIQAAALPLAL--------------EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQV 88 (207)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHc--------------CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHH
Confidence 58999999998874 246899999999999998766665544321 1124579999997 788899
Q ss_pred HHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 459 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 459 ~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
.+++.++.+. +.+..+.+....... ........+|+|+|++.+...... .......+++||+
T Consensus 89 ~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~------------~~~~~~~~~~iVi 150 (207)
T 2gxq_A 89 ASELTAVAPH----LKVVAVYGGTGYGKQ--KEALLRGADAVVATPGRALDYLRQ------------GVLDLSRVEVAVL 150 (207)
T ss_dssp HHHHHHHCTT----SCEEEECSSSCSHHH--HHHHHHCCSEEEECHHHHHHHHHH------------TSSCCTTCSEEEE
T ss_pred HHHHHHHhhc----ceEEEEECCCChHHH--HHHhhCCCCEEEECHHHHHHHHHc------------CCcchhhceEEEE
Confidence 9999999875 455555554322111 122335678999999987542110 1111237899999
Q ss_pred cCCcccCCc--ccHHHHHHHhcc-cCeEEEEecCC
Q 001149 539 DEAHMIKNT--RADTTQALKQVK-CQRRIALTGSP 570 (1138)
Q Consensus 539 DEaH~iKN~--~S~~skal~~l~-~~~RllLTGTP 570 (1138)
||||++.+. ...+...+..+. ..+.+++||||
T Consensus 151 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 151 DEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp ESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred EChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 999988532 334444455553 56789999998
No 74
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=144.64 Aligned_cols=164 Identities=13% Similarity=0.139 Sum_probs=100.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc--cCCCceEEEeCc-chHH
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN--LGLRTALIVTPV-NVLH 456 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~--~~~k~vLIV~P~-sll~ 456 (1138)
...|+|||.+++..+++ +.++|+...+|+|||++++.++...+.... ....++|||||. .++.
T Consensus 31 ~~~l~~~Q~~~i~~~~~--------------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 96 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE--------------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVE 96 (216)
T ss_dssp CCCCCHHHHHHHHHHHT--------------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHH
T ss_pred CCCchHHHHHHHHHHhc--------------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHH
Confidence 34799999999988742 368999999999999999988876654422 124689999997 5667
Q ss_pred H-HHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCE
Q 001149 457 N-WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 535 (1138)
Q Consensus 457 q-W~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dl 535 (1138)
| |.+++.+|.+.. +.+..+.+...... .........+|+|+||+.+.......... .........+++
T Consensus 97 q~~~~~~~~~~~~~---~~v~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~~------~~~~~~~~~~~~ 165 (216)
T 3b6e_A 97 QLFRKEFQPFLKKW---YRVIGLSGDTQLKI--SFPEVVKSCDIIISTAQILENSLLNLENG------EDAGVQLSDFSL 165 (216)
T ss_dssp HHHHHTHHHHHTTT---SCEEECCC---CCC--CHHHHHHHCSEEEEEHHHHHHHHHC-------------CCCGGGCSE
T ss_pred HHHHHHHHHHhccC---ceEEEEeCCcccch--hHHhhccCCCEEEECHHHHHHHHhccCcc------cccccchhcccE
Confidence 8 999999998652 55666655332110 00111235789999999986432111000 000012237899
Q ss_pred EEEcCCcccCCcccHHHHHHHhc------------------ccCeEEEEecC
Q 001149 536 LVCDEAHMIKNTRADTTQALKQV------------------KCQRRIALTGS 569 (1138)
Q Consensus 536 VIlDEaH~iKN~~S~~skal~~l------------------~~~~RllLTGT 569 (1138)
||+||||++..... ....+..+ ...+.++||||
T Consensus 166 iIiDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 166 IIIDECHHTNKEAV-YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp EEETTC-------C-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred EEEECchhhccCCc-HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 99999999964322 11111111 34689999998
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.44 E-value=8.6e-13 Score=141.28 Aligned_cols=165 Identities=11% Similarity=0.098 Sum_probs=108.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..+++ +..+|+...+|+|||+.++..+...+... .+..++|||||. .++.||.+
T Consensus 36 ~~~~~Q~~~i~~~~~--------------~~~~li~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~ 100 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL--------------GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTRELAFQISK 100 (220)
T ss_dssp CCCHHHHHHHHHHHT--------------TCCEEEECCTTSCHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------------CCCEEEECCCCCchhhhhhHHHHHhhhcc-CCCEEEEEEeCCHHHHHHHHH
Confidence 479999999987742 36799999999999998877776654322 123489999996 67889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchh-HHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~-~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++.++.... ..+++..+.+.... .....+. ....+|+|+|++.+..+... .......+++||+|
T Consensus 101 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~------------~~~~~~~~~~lViD 165 (220)
T 1t6n_A 101 EYERFSKYM-PNVKVAVFFGGLSIKKDEEVLK--KNCPHIVVGTPGRILALARN------------KSLNLKHIKHFILD 165 (220)
T ss_dssp HHHHHTTTS-TTCCEEEESCCSCHHHHHHHHH--HSCCSEEEECHHHHHHHHHT------------TSSCCTTCCEEEEE
T ss_pred HHHHHHhhC-CCceEEEEeCCCChHHHHHHHh--cCCCCEEEeCHHHHHHHHHh------------CCCCcccCCEEEEc
Confidence 999997531 13566666664332 2222221 12458999999987543111 01122378999999
Q ss_pred CCcccCCcc---cHHHHHHHhc-ccCeEEEEecCCCCCChhH
Q 001149 540 EAHMIKNTR---ADTTQALKQV-KCQRRIALTGSPLQNNLME 577 (1138)
Q Consensus 540 EaH~iKN~~---S~~skal~~l-~~~~RllLTGTPlqNnl~E 577 (1138)
|||++-... ..+...+..+ ...+.++|||||- +.+.+
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 206 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS-KEIRP 206 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCC-TTTHH
T ss_pred CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecC-HHHHH
Confidence 999985421 2233333444 3567899999994 33433
No 76
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.43 E-value=1.7e-12 Score=175.39 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=105.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc-c------cCCCceEEEeCc-
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV-N------LGLRTALIVTPV- 452 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~-~------~~~k~vLIV~P~- 452 (1138)
..|.|.|..++..++ ..+.+.+++..+|.|||+.|...+...+... . ...+++|+|+|.
T Consensus 78 ~~ln~iQs~~~~~al-------------~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~k 144 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL-------------ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMR 144 (1724)
T ss_dssp SBCCHHHHHTHHHHH-------------TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSH
T ss_pred CCCCHHHHHHHHHHH-------------cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHH
Confidence 357899999887665 3567899999999999998766655444321 1 123579999994
Q ss_pred chHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccC
Q 001149 453 NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 532 (1138)
Q Consensus 453 sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~ 532 (1138)
.|+.+=.++|.+.+.. ..++|..+.|...... ......+|+|+|++.+..+.... .+.. +-..
T Consensus 145 ALa~e~~~~l~~~~~~--~gi~V~~~tGd~~~~~-----~~~~~~~IlVtTpEkld~llr~~--~~~~--------~l~~ 207 (1724)
T 4f92_B 145 SLVQEMVGSFGKRLAT--YGITVAELTGDHQLCK-----EEISATQIIVCTPEKWDIITRKG--GERT--------YTQL 207 (1724)
T ss_dssp HHHHHHHHHHHHHHTT--TTCCEEECCSSCSSCC-----TTGGGCSEEEECHHHHHHHTTSS--TTHH--------HHTT
T ss_pred HHHHHHHHHHHHHHhh--CCCEEEEEECCCCCCc-----cccCCCCEEEECHHHHHHHHcCC--ccch--------hhcC
Confidence 5777777777665433 1367777766432211 11246789999999886553221 1111 1125
Q ss_pred CCEEEEcCCcccCCcccHH-----HHHHHh---c-ccCeEEEEecCCCCCChhHHH
Q 001149 533 PDILVCDEAHMIKNTRADT-----TQALKQ---V-KCQRRIALTGSPLQNNLMEYY 579 (1138)
Q Consensus 533 ~dlVIlDEaH~iKN~~S~~-----skal~~---l-~~~~RllLTGTPlqNnl~El~ 579 (1138)
..+||+||+|.+....... ++.++. + ...++++||||- .|+.|+.
T Consensus 208 v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA 261 (1724)
T 4f92_B 208 VRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVA 261 (1724)
T ss_dssp EEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHH
T ss_pred cCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHH
Confidence 6799999999996533222 222221 2 345789999993 3455554
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=141.36 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=107.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc---ccCCCceEEEeCc-chHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV---NLGLRTALIVTPV-NVLHN 457 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~---~~~~k~vLIV~P~-sll~q 457 (1138)
.++|||.+++..+. .+..+|+..+||+|||++++..+...+... .....++|||+|. .++.|
T Consensus 47 ~~~~~Q~~~i~~~~--------------~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q 112 (236)
T 2pl3_A 47 LVTEIQKQTIGLAL--------------QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQ 112 (236)
T ss_dssp BCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHH
Confidence 57899999998874 347899999999999998776655443221 1124579999997 67889
Q ss_pred HHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 458 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 458 W~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
|.+++.++.... .+.+..+.+........ ..+ ...+|+|+|++.+.... ..........+++||
T Consensus 113 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~--~~~-~~~~iiv~Tp~~l~~~l-----------~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 113 TFEVLRKVGKNH--DFSAGLIIGGKDLKHEA--ERI-NNINILVCTPGRLLQHM-----------DETVSFHATDLQMLV 176 (236)
T ss_dssp HHHHHHHHTTTS--SCCEEEECCC--CHHHH--HHH-TTCSEEEECHHHHHHHH-----------HHCSSCCCTTCCEEE
T ss_pred HHHHHHHHhCCC--CeeEEEEECCCCHHHHH--HhC-CCCCEEEECHHHHHHHH-----------HhcCCcccccccEEE
Confidence 999999998642 35566655543322111 112 46789999999875321 000011223789999
Q ss_pred EcCCcccCCc--ccHHHHHHHhcc-cCeEEEEecCCC
Q 001149 538 CDEAHMIKNT--RADTTQALKQVK-CQRRIALTGSPL 571 (1138)
Q Consensus 538 lDEaH~iKN~--~S~~skal~~l~-~~~RllLTGTPl 571 (1138)
+||||++.+. .......+..+. ..++++||||+-
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 9999998643 344555556664 566899999983
No 78
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.38 E-value=1.1e-12 Score=147.56 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=106.7
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...+.|+.+|.+++.... +.++|||+.+....+.+...|.. .|+.+..++|+++..+|+.+++.|+
T Consensus 10 ~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~------------~g~~~~~lhg~l~~~~r~~~~~~f~ 75 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLR------------LGHPAQALHGDMSQGERERVMGAFR 75 (300)
T ss_dssp CCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHT------------TTCCEEEECSCCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHh------------CCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 455789999999998753 78999999999999999999986 5889999999999999999999999
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEecCC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 918 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~g 918 (1138)
+ +.++ +|++|.+++.|||++++++||.||++|++..+.|++||++|.|+.. .+|.|+...
T Consensus 76 ~---g~~~-vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 76 Q---GEVR-VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp H---TSCC-EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred c---CCce-EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 6 3444 5899999999999999999999999999999999999999999874 455566554
No 79
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.37 E-value=6.3e-10 Score=138.49 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=108.2
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
.+++..|+..|......+.++|||+.+..+.+.|..+|.. .|+....++|.++..+|..+++.|..
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~------------~gi~~~~lh~~~~~~~R~~~~~~f~~-- 487 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE------------HGIRARYLHHELDAFKRQALIRDLRL-- 487 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTCCHHHHHHHHHHHHT--
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh------------cCCCceeecCCCCHHHHHHHHHHhhc--
Confidence 4577777777877777799999999999999999999997 57888999999999999999999986
Q ss_pred CCCceEEEeeccccccCCCcccCCEEEEEcC-----CCCcchHHHHHHHHHhhCCCCcEEEEEEecCCC
Q 001149 856 NKRVKCTLISTRAGSLGINLHSANRVIIVDG-----SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 919 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~-----~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gT 919 (1138)
+.+. +|++|.+.+.|+|++.++.||++|+ ++++..+.|++||++|.|.. .++.|+...+
T Consensus 488 -g~~~-VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G---~~i~~~~~~~ 551 (664)
T 1c4o_A 488 -GHYD-CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARG---EVWLYADRVS 551 (664)
T ss_dssp -TSCS-EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC---EEEEECSSCC
T ss_pred -CCce-EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCC---EEEEEEcCCC
Confidence 4454 6889999999999999999999998 89999999999999998632 4555666554
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.37 E-value=4.7e-12 Score=136.79 Aligned_cols=158 Identities=12% Similarity=0.069 Sum_probs=106.1
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..+. .+..+|+...+|.|||++++..+...+... ....++|||||. .++.||.+
T Consensus 46 ~~~~~Q~~~i~~~~--------------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 110 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR--------------CGLDLIVQAKSGTGKTCVFSTIALDSLVLE-NLSTQILILAPTREIAVQIHS 110 (230)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEeCCHHHHHHHHH
Confidence 47999999998763 346899999999999998655444333221 124589999996 68889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.... ..+++..+.+........ .. ....+|+|+|++.+..+.... .+....+++||+||
T Consensus 111 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~--~~-~~~~~Iiv~Tp~~l~~~~~~~------------~~~~~~~~~lViDE 174 (230)
T 2oxc_A 111 VITAIGIKM-EGLECHVFIGGTPLSQDK--TR-LKKCHIAVGSPGRIKQLIELD------------YLNPGSIRLFILDE 174 (230)
T ss_dssp HHHHHTTTS-TTCCEEEECTTSCHHHHH--HH-TTSCSEEEECHHHHHHHHHTT------------SSCGGGCCEEEESS
T ss_pred HHHHHhccc-CCceEEEEeCCCCHHHHH--Hh-ccCCCEEEECHHHHHHHHhcC------------CcccccCCEEEeCC
Confidence 999997531 135666666644322111 11 246789999999875432110 11123688999999
Q ss_pred CcccCC---cccHHHHHHHhcc-cCeEEEEecCC
Q 001149 541 AHMIKN---TRADTTQALKQVK-CQRRIALTGSP 570 (1138)
Q Consensus 541 aH~iKN---~~S~~skal~~l~-~~~RllLTGTP 570 (1138)
||++-. ....+...+..+. ..+.++||||+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 999843 3344445556664 56789999996
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.36 E-value=5e-12 Score=133.68 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=106.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..+. .+.++++...+|.|||+.++..+...+... ....++|||||. .++.||.+
T Consensus 25 ~~~~~Q~~~i~~~~--------------~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~ 89 (206)
T 1vec_A 25 KPSPIQEESIPIAL--------------SGRDILARAKNGTGKSGAYLIPLLERLDLK-KDNIQAMVIVPTRELALQVSQ 89 (206)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCSCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc--------------cCCCEEEECCCCCchHHHHHHHHHHHhccc-CCCeeEEEEeCcHHHHHHHHH
Confidence 58999999998774 247899999999999987776555443221 123579999996 57789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.... ..+.+..+.+...... .........+|+|+|++.+....... ......+++||+||
T Consensus 90 ~~~~~~~~~-~~~~~~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~lViDE 154 (206)
T 1vec_A 90 ICIQVSKHM-GGAKVMATTGGTNLRD--DIMRLDDTVHVVIATPGRILDLIKKG------------VAKVDHVQMIVLDE 154 (206)
T ss_dssp HHHHHTTTS-SSCCEEEECSSSCHHH--HHHHTTSCCSEEEECHHHHHHHHHTT------------CSCCTTCCEEEEET
T ss_pred HHHHHHhhc-CCceEEEEeCCccHHH--HHHhcCCCCCEEEeCHHHHHHHHHcC------------CcCcccCCEEEEEC
Confidence 999987542 1255666655443221 12233456789999999875321100 11123789999999
Q ss_pred CcccCCcc--cHHHHHHHhcc-cCeEEEEecCC
Q 001149 541 AHMIKNTR--ADTTQALKQVK-CQRRIALTGSP 570 (1138)
Q Consensus 541 aH~iKN~~--S~~skal~~l~-~~~RllLTGTP 570 (1138)
||++.... ......+..+. ..+.++||||+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 99886532 23334444453 67889999998
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.34 E-value=5e-12 Score=138.54 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=107.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..++ .+.++|+...+|+|||++++..+...+.... ...++|||+|. .++.||.+
T Consensus 65 ~~~~~Q~~~i~~i~--------------~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-~~~~~lil~Ptr~L~~q~~~ 129 (249)
T 3ber_A 65 KPTKIQIEAIPLAL--------------QGRDIIGLAETGSGKTGAFALPILNALLETP-QRLFALVLTPTRELAFQISE 129 (249)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-CSSCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-CCceEEEEeCCHHHHHHHHH
Confidence 57999999998774 3478999999999999987766655443322 23479999997 57789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.... .+.+..+.+....... ........+|+|+|++.+..... ....+....+++||+||
T Consensus 130 ~~~~~~~~~--~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~-----------~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 130 QFEALGSSI--GVQSAVIVGGIDSMSQ--SLALAKKPHIIIATPGRLIDHLE-----------NTKGFNLRALKYLVMDE 194 (249)
T ss_dssp HHHHHHGGG--TCCEEEECTTSCHHHH--HHHHHTCCSEEEECHHHHHHHHH-----------HSTTCCCTTCCEEEECS
T ss_pred HHHHHhccC--CeeEEEEECCCChHHH--HHHhcCCCCEEEECHHHHHHHHH-----------cCCCcCccccCEEEEcC
Confidence 999986531 2455555554322211 12223567899999998753210 00111123689999999
Q ss_pred CcccCCc--ccHHHHHHHhc-ccCeEEEEecCCC
Q 001149 541 AHMIKNT--RADTTQALKQV-KCQRRIALTGSPL 571 (1138)
Q Consensus 541 aH~iKN~--~S~~skal~~l-~~~~RllLTGTPl 571 (1138)
||++.+. ...+...+..+ ...++++||||+-
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 9988643 33444555555 3577899999983
No 83
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.34 E-value=3e-12 Score=137.37 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=102.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..+. .+..+|+...+|.|||++++..+...+... ....++|||+|. .++.||.+
T Consensus 36 ~~~~~Q~~~i~~~~--------------~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 100 (224)
T 1qde_A 36 EPSAIQQRAIMPII--------------EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELALQIQK 100 (224)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHh--------------cCCCEEEECCCCCcHHHHHHHHHHHHHhcc-CCCceEEEEECCHHHHHHHHH
Confidence 58999999998774 246799999999999998544444333221 124589999997 67789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.++.... .+.+..+.+...... ....+ ...+|+|+|++.+....... ......+++||+||
T Consensus 101 ~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~-~~~~iiv~Tp~~l~~~~~~~------------~~~~~~~~~iViDE 163 (224)
T 1qde_A 101 VVMALAFHM--DIKVHACIGGTSFVE--DAEGL-RDAQIVVGTPGRVFDNIQRR------------RFRTDKIKMFILDE 163 (224)
T ss_dssp HHHHHTTTS--CCCEEEECC------------C-TTCSEEEECHHHHHHHHHTT------------SSCCTTCCEEEEET
T ss_pred HHHHHhccc--CceEEEEeCCcchHH--HHhcC-CCCCEEEECHHHHHHHHHhC------------CcchhhCcEEEEcC
Confidence 999997642 355665555432211 11122 24789999999875321110 11123689999999
Q ss_pred CcccCCc--ccHHHHHHHhc-ccCeEEEEecCCC
Q 001149 541 AHMIKNT--RADTTQALKQV-KCQRRIALTGSPL 571 (1138)
Q Consensus 541 aH~iKN~--~S~~skal~~l-~~~~RllLTGTPl 571 (1138)
||++... ...+...+..+ ...+.++||||+-
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 9997532 23344455555 4566899999983
No 84
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.33 E-value=2.2e-12 Score=138.19 Aligned_cols=166 Identities=16% Similarity=0.101 Sum_probs=107.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..+.+ +..+|+...+|+|||++++..+...+... ....++|||+|. .++.||.+
T Consensus 26 ~~~~~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 90 (219)
T 1q0u_A 26 KPTEIQERIIPGALR--------------GESMVGQSQTGTGKTHAYLLPIMEKIKPE-RAEVQAVITAPTRELATQIYH 90 (219)
T ss_dssp SCCHHHHHHHHHHHH--------------TCCEEEECCSSHHHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------------CCCEEEECCCCChHHHHHHHHHHHHHHhC-cCCceEEEEcCcHHHHHHHHH
Confidence 479999999988753 36799999999999998666555443322 123579999996 67889999
Q ss_pred HHHHHCCCCCC--CeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEE
Q 001149 461 EFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 538 (1138)
Q Consensus 461 E~~kw~p~~~~--~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIl 538 (1138)
++.++...... .+.+..+.+...... ....+....+|+|+|++.+....... ......+++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~Iiv~Tp~~l~~~l~~~------------~~~~~~~~~lVi 156 (219)
T 1q0u_A 91 ETLKITKFCPKDRMIVARCLIGGTDKQK--ALEKLNVQPHIVIGTPGRINDFIREQ------------ALDVHTAHILVV 156 (219)
T ss_dssp HHHHHHTTSCGGGCCCEEEECCCSHHHH--TTCCCSSCCSEEEECHHHHHHHHHTT------------CCCGGGCCEEEE
T ss_pred HHHHHhhhcccccceEEEEEeCCCCHHH--HHHHcCCCCCEEEeCHHHHHHHHHcC------------CCCcCcceEEEE
Confidence 99998753110 245555555432211 11112235689999999875421110 011236789999
Q ss_pred cCCcccCCc--ccHHHHHHHhcc-cCeEEEEecCCCCCChhH
Q 001149 539 DEAHMIKNT--RADTTQALKQVK-CQRRIALTGSPLQNNLME 577 (1138)
Q Consensus 539 DEaH~iKN~--~S~~skal~~l~-~~~RllLTGTPlqNnl~E 577 (1138)
||||++... .......+..+. ..+++++|||+ .+.+.+
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHH
Confidence 999998633 234445555553 56789999997 334433
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.33 E-value=6.4e-12 Score=137.63 Aligned_cols=160 Identities=11% Similarity=0.118 Sum_probs=106.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc--------cCCCceEEEeCc
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN--------LGLRTALIVTPV 452 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~--------~~~k~vLIV~P~ 452 (1138)
..++|||.+++..++ .+..+|+...+|+|||+.++..+...+.... ....++|||||.
T Consensus 44 ~~~~~~Q~~~i~~i~--------------~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt 109 (253)
T 1wrb_A 44 QRPTPIQKNAIPAIL--------------EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPT 109 (253)
T ss_dssp CSCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSS
T ss_pred CCCCHHHHHHHHHHh--------------CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECC
Confidence 358999999998774 2468999999999999987766655543221 123489999997
Q ss_pred -chHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhcc
Q 001149 453 -NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 531 (1138)
Q Consensus 453 -sll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~ 531 (1138)
.|+.||.+++.++.... .+.+..+.+...... .........+|+|+|++.+....... .....
T Consensus 110 ~~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~------------~~~~~ 173 (253)
T 1wrb_A 110 RELAIQILSESQKFSLNT--PLRSCVVYGGADTHS--QIREVQMGCHLLVATPGRLVDFIEKN------------KISLE 173 (253)
T ss_dssp HHHHHHHHHHHHHHHTTS--SCCEEEECSSSCSHH--HHHHHSSCCSEEEECHHHHHHHHHTT------------SBCCT
T ss_pred HHHHHHHHHHHHHHhccC--CceEEEEECCCCHHH--HHHHhCCCCCEEEECHHHHHHHHHcC------------CCChh
Confidence 67889999999987542 345555554432211 11223356789999999875431110 11123
Q ss_pred CCCEEEEcCCcccCCc--ccHHHHHHHhcc-----cCeEEEEecCC
Q 001149 532 GPDILVCDEAHMIKNT--RADTTQALKQVK-----CQRRIALTGSP 570 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~--~S~~skal~~l~-----~~~RllLTGTP 570 (1138)
.+++||+||||++... .......+..+. ..+.+++||||
T Consensus 174 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred hCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 6789999999997533 334445555332 45689999998
No 86
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.33 E-value=2.3e-11 Score=147.35 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=98.7
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCC
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 855 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~ 855 (1138)
..|..+|.+.|......|.+||||+.+....+.|...|.. .|+....++|.....+|..+..+|..
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~------------~Gi~~~vLhgkq~~rE~~ii~~ag~~-- 522 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK------------KGIPHQVLNAKYHEKEAEIVAKAGQK-- 522 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT------------TTCCCEEECSCHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH------------CCCCEEEeeCCchHHHHHHHHhCCCC--
Confidence 4699999999988777789999999999999999999996 68999999998554455444555653
Q ss_pred CCCceEEEeeccccccCCCcc--------cCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001149 856 NKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 909 (1138)
Q Consensus 856 n~~v~v~LiSTkaGg~GLNLt--------~An~VIi~D~~WNP~~~~QAigR~~RiGQ~k~V 909 (1138)
+. ++|+|..+|.|+++. +..+||.+|.|-++..+.|++||++|.|..-..
T Consensus 523 -g~---VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 523 -GM---VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp -TC---EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred -Ce---EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 22 599999999999997 677999999999999999999999999987443
No 87
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.32 E-value=6.3e-12 Score=154.19 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeecccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 871 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiSTkaGg~ 871 (1138)
.+.++|||++.....+.+.+.|.. .|+....++|+++..+ |.. ++. -+|++|.+.+.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~------------~g~~v~~lHG~l~q~e-------r~~--~~~--~VLVATdVaer 451 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG------------LGINAVAYYRGLDVSV-------IPT--IGD--VVVVATDALMT 451 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT------------TTCCEEEECTTSCGGG-------SCS--SSC--EEEEECTTHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh------------CCCcEEEecCCCCHHH-------HHh--CCC--cEEEECChHHc
Confidence 478999999999999999999986 5889999999998664 333 222 37999999999
Q ss_pred CCCcccCCEEE----------EEc-----------CCCCcchHHHHHHHHHhhCCCCcEEEEEEecCCCHH
Q 001149 872 GINLHSANRVI----------IVD-----------GSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 921 (1138)
Q Consensus 872 GLNLt~An~VI----------i~D-----------~~WNP~~~~QAigR~~RiGQ~k~V~VyrLv~~gTiE 921 (1138)
|||+. ++.|| .|| .+-++..+.|++||++| |.. -. |.|+.....+
T Consensus 452 GIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~-G~--i~lvt~~e~~ 517 (666)
T 3o8b_A 452 GYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR-GI--YRFVTPGERP 517 (666)
T ss_dssp HCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC-EE--EEESCCCCBC
T ss_pred cCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC-CE--EEEEecchhh
Confidence 99985 99888 455 67778899999999999 654 23 7888776544
No 88
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.28 E-value=5.9e-12 Score=136.73 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=102.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..++ .+..+|+...+|+|||++++..+...+... ....++|||+|. .++.||.+
T Consensus 52 ~~~~~Q~~ai~~i~--------------~~~~~li~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 116 (237)
T 3bor_A 52 KPSAIQQRAIIPCI--------------KGYDVIAQAQSGTGKTATFAISILQQLEIE-FKETQALVLAPTRELAQQIQK 116 (237)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEECCCSSHHHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEECcHHHHHHHHH
Confidence 47999999998774 246799999999999988666555543321 123589999996 57889999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHh-hcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~-~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
++.++.... .+.+....+..... ....... ...+|+|+|++.+....... ......+++||+|
T Consensus 117 ~~~~~~~~~--~~~~~~~~g~~~~~--~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~------------~~~~~~~~~lViD 180 (237)
T 3bor_A 117 VILALGDYM--GATCHACIGGTNVR--NEMQKLQAEAPHIVVGTPGRVFDMLNRR------------YLSPKWIKMFVLD 180 (237)
T ss_dssp HHHHHTTTT--TCCEEEECC---------------CCCSEEEECHHHHHHHHHTT------------SSCSTTCCEEEEE
T ss_pred HHHHHhhhc--CceEEEEECCCchH--HHHHHHhcCCCCEEEECHHHHHHHHHhC------------CcCcccCcEEEEC
Confidence 999997542 24444444432211 1111222 23689999998865321100 0112368999999
Q ss_pred CCcccC--CcccHHHHHHHhcc-cCeEEEEecCCC
Q 001149 540 EAHMIK--NTRADTTQALKQVK-CQRRIALTGSPL 571 (1138)
Q Consensus 540 EaH~iK--N~~S~~skal~~l~-~~~RllLTGTPl 571 (1138)
|||++- +....+...+..+. ..+.+++|||+-
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 999874 34445556666664 567799999983
No 89
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.24 E-value=5e-11 Score=128.34 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=102.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc-----ccCCCceEEEeCcc-hH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV-----NLGLRTALIVTPVN-VL 455 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~-----~~~~k~vLIV~P~s-ll 455 (1138)
.++|||.+++..+. .+..+|+...+|.|||+.++..+...+... ......+|||+|.. ++
T Consensus 42 ~~~~~Q~~~i~~~~--------------~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 107 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL--------------QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELA 107 (228)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHH
Confidence 58999999998764 347899999999999998766555443221 11345799999965 77
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCE
Q 001149 456 HNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 535 (1138)
Q Consensus 456 ~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dl 535 (1138)
.||.+++.++.... +.+..+.+..... .....+....+|+|+|++.+..+.... ......+++
T Consensus 108 ~q~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~iiv~Tp~~l~~~~~~~------------~~~~~~~~~ 170 (228)
T 3iuy_A 108 LHVEAECSKYSYKG---LKSICIYGGRNRN--GQIEDISKGVDIIIATPGRLNDLQMNN------------SVNLRSITY 170 (228)
T ss_dssp HHHHHHHHHHCCTT---CCEEEECC--------CHHHHHSCCSEEEECHHHHHHHHHTT------------CCCCTTCCE
T ss_pred HHHHHHHHHhcccC---ceEEEEECCCChH--HHHHHhcCCCCEEEECHHHHHHHHHcC------------CcCcccceE
Confidence 89999999997443 4455444432211 112233456789999999875431110 111236899
Q ss_pred EEEcCCcccCCc--ccHHHHHHHhcc-cCeEEEEecCC
Q 001149 536 LVCDEAHMIKNT--RADTTQALKQVK-CQRRIALTGSP 570 (1138)
Q Consensus 536 VIlDEaH~iKN~--~S~~skal~~l~-~~~RllLTGTP 570 (1138)
||+||||++-.. .......+..+. ..+.+++|||.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 999999987543 334445555553 56779999996
No 90
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=133.37 Aligned_cols=162 Identities=16% Similarity=0.148 Sum_probs=102.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc-chHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~-sll~qW~~ 460 (1138)
.++|||.+++..++ .+..+|+...+|.|||+.++..+...+........++|||+|. .++.||.+
T Consensus 51 ~~~~~Q~~~i~~~~--------------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 116 (245)
T 3dkp_A 51 MPTPIQMQAIPVML--------------HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHR 116 (245)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHH
Confidence 48999999998764 2467999999999999987666555443322233579999996 57789999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
++.+++... .+.+..+.+....... .........+|+|+|++.+..+...... ......+++||+||
T Consensus 117 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~----------~~~~~~~~~lViDE 183 (245)
T 3dkp_A 117 ELIKISEGT--GFRIHMIHKAAVAAKK-FGPKSSKKFDILVTTPNRLIYLLKQDPP----------GIDLASVEWLVVDE 183 (245)
T ss_dssp HHHHHTTTS--CCCEECCCHHHHHHTT-TSTTSCCCCCEEEECHHHHHHHHHSSSC----------SCCCTTCCEEEESS
T ss_pred HHHHHhccc--CceEEEEecCccHHHH-hhhhhcCCCCEEEECHHHHHHHHHhCCC----------CcccccCcEEEEeC
Confidence 999997642 2445444432211100 0001123457999999987543211100 01122678999999
Q ss_pred CcccCC-----cccHHHHHHHhc--ccCeEEEEecCC
Q 001149 541 AHMIKN-----TRADTTQALKQV--KCQRRIALTGSP 570 (1138)
Q Consensus 541 aH~iKN-----~~S~~skal~~l--~~~~RllLTGTP 570 (1138)
||++-. ....+...+..+ ...+.++||||+
T Consensus 184 ah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred hHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 999853 222333333343 346789999998
No 91
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.18 E-value=7.9e-11 Score=129.97 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=104.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhc---ccCCCceEEEeCc-chHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV---NLGLRTALIVTPV-NVLHN 457 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~---~~~~k~vLIV~P~-sll~q 457 (1138)
.++|+|.+++..++. +..+|+...+|.|||+.++..+...+... ......+|||+|. .|+.|
T Consensus 76 ~~~~~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q 141 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE--------------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQ 141 (262)
T ss_dssp BCCHHHHHHHHHHHH--------------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHH
Confidence 479999999987643 36789999999999998766555444321 1124579999996 57789
Q ss_pred HHHHHHHHCCCCCCCeEEEEecCcc-hhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEE
Q 001149 458 WKQEFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 536 (1138)
Q Consensus 458 W~~E~~kw~p~~~~~l~V~~~~~~~-~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlV 536 (1138)
|.+++.+++... .+.+..+.+.. ..... .......+|+|+|++.+..... .........+++|
T Consensus 142 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~~~-----------~~~~~~~~~l~~l 205 (262)
T 3ly5_A 142 TFGVLKELMTHH--VHTYGLIMGGSNRSAEA---QKLGNGINIIVATPGRLLDHMQ-----------NTPGFMYKNLQCL 205 (262)
T ss_dssp HHHHHHHHTTTC--CSCEEEECSSSCHHHHH---HHHHHCCSEEEECHHHHHHHHH-----------HCTTCCCTTCCEE
T ss_pred HHHHHHHHHhhc--CceEEEEECCCCHHHHH---HHhcCCCCEEEEcHHHHHHHHH-----------ccCCcccccCCEE
Confidence 999999998652 23444444433 22222 2223457899999988753210 0001112367999
Q ss_pred EEcCCcccCCc--ccHHHHHHHhc-ccCeEEEEecCCC
Q 001149 537 VCDEAHMIKNT--RADTTQALKQV-KCQRRIALTGSPL 571 (1138)
Q Consensus 537 IlDEaH~iKN~--~S~~skal~~l-~~~~RllLTGTPl 571 (1138)
|+||||++-.. ...+...+..+ ...+.++||||+-
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 99999987542 33444455555 3567899999983
No 92
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.14 E-value=3.6e-10 Score=122.94 Aligned_cols=158 Identities=12% Similarity=0.086 Sum_probs=104.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc----cCCCceEEEeCcc-hHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN----LGLRTALIVTPVN-VLH 456 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~----~~~k~vLIV~P~s-ll~ 456 (1138)
.++|||.+++..+.+ +..+|+...+|.|||+.++..+...+.... .....+|||+|.. |+.
T Consensus 51 ~~~~~Q~~~i~~~~~--------------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~ 116 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS--------------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ 116 (242)
T ss_dssp SCCHHHHHHHHHHHH--------------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC--------------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHH
Confidence 478999999987643 368999999999999987666555443211 1245799999964 777
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecCcc-hhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCE
Q 001149 457 NWKQEFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 535 (1138)
Q Consensus 457 qW~~E~~kw~p~~~~~l~V~~~~~~~-~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dl 535 (1138)
||.+++.++.... .+.+..+.+.. ..... ..+....+|+|+|++.+..+... .......+++
T Consensus 117 Q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~------------~~~~~~~~~~ 179 (242)
T 3fe2_A 117 QVQQVAAEYCRAC--RLKSTCIYGGAPKGPQI---RDLERGVEICIATPGRLIDFLEC------------GKTNLRRTTY 179 (242)
T ss_dssp HHHHHHHHHHHHT--TCCEEEECTTSCHHHHH---HHHHHCCSEEEECHHHHHHHHHH------------TSCCCTTCCE
T ss_pred HHHHHHHHHHhhc--CceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHc------------CCCCcccccE
Confidence 9999998876431 24555555433 22222 23345678999999987542110 0111237889
Q ss_pred EEEcCCcccCCc--ccHHHHHHHhc-ccCeEEEEecCC
Q 001149 536 LVCDEAHMIKNT--RADTTQALKQV-KCQRRIALTGSP 570 (1138)
Q Consensus 536 VIlDEaH~iKN~--~S~~skal~~l-~~~~RllLTGTP 570 (1138)
||+||||++-.. .......+..+ .....+++|||+
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 999999987542 33344445555 456789999996
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.08 E-value=4.2e-11 Score=101.15 Aligned_cols=58 Identities=22% Similarity=0.625 Sum_probs=48.7
Q ss_pred cCCCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcchHhH
Q 001149 187 KDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKR 250 (1138)
Q Consensus 187 ~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~ 250 (1138)
.++|.++.+|.+|+++|+|++||.|+++||..|+.+.+. ..+.+.|+|+.|...++++
T Consensus 3 ~~~d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~------~~p~g~W~C~~C~~~~~k~ 60 (61)
T 1mm2_A 3 LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLP------EIPNGEWLCPRCTCPALKG 60 (61)
T ss_dssp TCSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCS------SCCSSCCCCTTTTTTCCTT
T ss_pred ccccCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcC------cCCCCccCChhhcCchhcC
Confidence 367888899999999999999999999999999876542 2456899999998877653
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.98 E-value=2e-10 Score=103.13 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=44.6
Q ss_pred CCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 189 ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 189 ~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
.|.++.+|.+|++||+|++||.|+++||..|+.+.+. ..+.+.|+|+.|...+
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~------~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCC------CCCSSSCCCCSCCCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCC------CCcCCCcCCccccCCC
Confidence 4667779999999999999999999999999876543 3466899999997543
No 95
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=3.2e-10 Score=95.77 Aligned_cols=58 Identities=16% Similarity=0.518 Sum_probs=47.4
Q ss_pred CcccCCCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 184 MHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 184 ~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
.+...++.++.+|.+|+++|+|++||.|+++||..|+.+.+. ..+.+.|+|+.|....
T Consensus 2 ~~~~~~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~------~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 2 PLGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDME------KAPEGKWSCPHCEKEG 59 (61)
T ss_dssp CCSCCSSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCC------SCCCSSCCCTTGGGGS
T ss_pred CCCcccCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCC------CCCCCceECccccccc
Confidence 344556777889999999999999999999999999876532 2456899999997653
No 96
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.83 E-value=1.1e-09 Score=116.46 Aligned_cols=53 Identities=28% Similarity=0.710 Sum_probs=45.1
Q ss_pred CCCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 188 DADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 188 d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
++|+++++|.+|++||+|+|||.|+++||..|+.+.+. ..+.+.|+|+.|...
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~------~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLL------SFPSGDWICTFCRDI 54 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCC------CCCCCCEEeCceeCc
Confidence 57888899999999999999999999999999876543 245688999999764
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.83 E-value=1.1e-09 Score=94.05 Aligned_cols=50 Identities=24% Similarity=0.745 Sum_probs=41.8
Q ss_pred CCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 190 DCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 190 d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+.++.+|.+|++||+|++||.|+++||..|+.+.+. ..+.+.|+|+.|..
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~------~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLR------EIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCS------SCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcC------cCCCCCeECccccC
Confidence 456779999999999999999999999999875432 23568999999954
No 98
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=90.39 Aligned_cols=52 Identities=21% Similarity=0.707 Sum_probs=44.1
Q ss_pred cCCCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 187 KDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 187 ~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.++++++.+|.+|+.+|+|++||.|+++||..|+.+.+. ..+.+.|+|+.|.
T Consensus 3 ~g~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~------~~p~g~W~C~~C~ 54 (56)
T 2yql_A 3 SGSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK------TIPKGMWICPRCQ 54 (56)
T ss_dssp CCCCSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCC------SCCCSSCCCHHHH
T ss_pred CCcCCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcC------CCCCCceEChhhh
Confidence 356788889999999999999999999999999876543 2456899999994
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=92.54 Aligned_cols=51 Identities=22% Similarity=0.692 Sum_probs=42.7
Q ss_pred CCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
|.++.+|.+|+.+|+|++||.|+++||..|+.+.+. ..+.+.|+|+.|...
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~------~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK------TIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCS------SCCCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcC------CCCCCceEChhccCh
Confidence 567789999999999999999999999999876442 245689999999543
No 100
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.81 E-value=8.7e-09 Score=115.94 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=97.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.+.|+|..++..++. ..+...|+...+|.|||+..+..+...+.... ....+|||+|.. |..|+.+
T Consensus 114 ~pt~iQ~~ai~~il~------------~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-~~~~~lil~PtreLa~Q~~~ 180 (300)
T 3fmo_B 114 RPSKIQENALPLMLA------------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTGK 180 (300)
T ss_dssp SCCHHHHHHHHHHTS------------SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc------------CCCCeEEEECCCCCCccHHHHHHHHHhhhccC-CCceEEEEcCcHHHHHHHHH
Confidence 467899999976632 23478999999999999876544433322211 123699999965 6779999
Q ss_pred HHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcC
Q 001149 461 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 540 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDE 540 (1138)
.+.++.... ..+.+....+.....+.. ....+|+|+|++.+..+..... .+......+||+||
T Consensus 181 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~IlV~TP~~l~~~l~~~~-----------~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 181 VIEQMGKFY-PELKLAYAVRGNKLERGQ-----KISEQIVIGTPGTVLDWCSKLK-----------FIDPKKIKVFVLDE 243 (300)
T ss_dssp HHHHHTTTS-TTCCEEEESTTCCCCTTC-----CCCCSEEEECHHHHHHHHTTTC-----------CCCGGGCSEEEETT
T ss_pred HHHHHHhhC-CCcEEEEEeCCccHhhhh-----cCCCCEEEECHHHHHHHHHhcC-----------CCChhhceEEEEeC
Confidence 998886431 124555544433211110 2355799999998753321100 00112678999999
Q ss_pred CcccCCc---ccHHHHHHHhc-ccCeEEEEecCCC
Q 001149 541 AHMIKNT---RADTTQALKQV-KCQRRIALTGSPL 571 (1138)
Q Consensus 541 aH~iKN~---~S~~skal~~l-~~~~RllLTGTPl 571 (1138)
||++-.. .......+..+ .....+++|||+-
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 9997531 12222233333 3467899999983
No 101
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.77 E-value=2.8e-09 Score=91.12 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=40.6
Q ss_pred CcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
....|.+|++||+||+||.|+++||..|+.+.+. ..+.+.|+|..|..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~------~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT------SRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTC------CCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccC------cCCCCCEECccccC
Confidence 4458999999999999999999999999876643 34568899999963
No 102
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.74 E-value=3.2e-09 Score=110.67 Aligned_cols=50 Identities=22% Similarity=0.700 Sum_probs=42.4
Q ss_pred CCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 191 CSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.++++|.+|++||+|+|||.|+++||..|+.+.+. ..+.+.|+|+.|...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~------~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLT------NFPSGEWICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCS
T ss_pred CCCCccccCCCCCeeeecCCCCcccCccccCCCCC------CCCCCCEECccccCc
Confidence 46679999999999999999999999999876543 345688999999654
No 103
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.74 E-value=1.1e-07 Score=117.66 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=90.1
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH----H
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH----N 457 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~----q 457 (1138)
..+|-|..|+--+. .|-|....+|.|||+.+...++..... .+.++||+|+.-+. +
T Consensus 79 ~Pt~VQ~~~ip~Ll----------------qG~IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 79 RHFDVQLIGGAVLH----------------EGKIAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAE 138 (997)
T ss_dssp CCCHHHHHHHHHHH----------------TTSEEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHH
T ss_pred CCcHHHHhhccccc----------------CCceeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHH
Confidence 45788888886553 244888999999999765544322211 35799999988654 3
Q ss_pred HHHHHHHHCCCCCCCeEEEEecCc-chhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhcc---CC
Q 001149 458 WKQEFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD---GP 533 (1138)
Q Consensus 458 W~~E~~kw~p~~~~~l~V~~~~~~-~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~---~~ 533 (1138)
|...+.++++ +.+..+.+. ....+... ...+|++.|...|..-.....+. .....+... +.
T Consensus 139 ~m~~l~~~lG-----Lsv~~i~Gg~~~~~r~~a-----y~~DIvyGTpgrlgfDyLrd~m~-----~~~~~l~~r~d~~l 203 (997)
T 2ipc_A 139 WMGPVYRGLG-----LSVGVIQHASTPAERRKA-----YLADVTYVTNSELGFDYLRDNMA-----ISPDQLVLRHDHPL 203 (997)
T ss_dssp HHHHHHHTTT-----CCEEECCTTCCHHHHHHH-----HTSSEEEEEHHHHHHHHHHHTSC-----SSTTTCCSCSSSSS
T ss_pred HHHHHHHhcC-----CeEEEEeCCCCHHHHHHH-----cCCCEEEECchhhhhHHHHHhhh-----cchhhcccccCCCc
Confidence 7777777764 566555543 33222221 24689999888762100000000 000012223 67
Q ss_pred CEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCCCCCChhHHHHHh
Q 001149 534 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 582 (1138)
Q Consensus 534 dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~El~~ll 582 (1138)
.++|+||+|.+--. .+..-+++|| |+... ..+|..+
T Consensus 204 ~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY~~~ 239 (997)
T 2ipc_A 204 HYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDLYYKM 239 (997)
T ss_dssp CEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHHHHH
T ss_pred ceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHHHHH
Confidence 89999999965322 2223389999 88877 4444443
No 104
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.64 E-value=8.1e-09 Score=107.77 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=41.9
Q ss_pred cccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 193 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 193 ~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
+++|.+|++||+|+|||.|+++||..|+.+.+. ..+.+.|.|..|...+
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~------~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCS------SCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcc------cCCCCCCCCcCccCCC
Confidence 569999999999999999999999999876543 2456899999998764
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.56 E-value=1.8e-08 Score=86.70 Aligned_cols=56 Identities=20% Similarity=0.496 Sum_probs=45.0
Q ss_pred CCCCCcccccccCCC-----CceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 188 DADCSECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 188 d~d~~~~~C~~C~~g-----g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
++++++..|.+|+.+ |.|++||.|+++||..|+.+.+.... +.+.+.|+|..|...
T Consensus 1 g~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~---~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 1 GSSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSV---IDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHH---HHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccc---cCCCCCEECCCCcCc
Confidence 356778899999998 99999999999999999877554321 236789999999543
No 106
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=83.12 Aligned_cols=48 Identities=23% Similarity=0.753 Sum_probs=38.9
Q ss_pred CcccccccC---CCCceeecCCccccccccccccCCCcccccccccCC-CceeecCCc
Q 001149 192 SECYCVWCG---RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS-CWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~---~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~-~W~C~~C~~ 245 (1138)
.+..|.+|+ ++|+|++||.|+++||..|+.+.+. ..+.+ .|+|+.|..
T Consensus 25 ~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~------~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 25 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLD------KVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCS------SCCCSSCCCCTTTCC
T ss_pred CCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCcc------CCCCCCCcCCcCccC
Confidence 445899999 6899999999999999999876543 23456 899999963
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.40 E-value=1.7e-07 Score=89.35 Aligned_cols=77 Identities=26% Similarity=0.644 Sum_probs=56.1
Q ss_pred CCceeeccCCCccccccc--cccc------ccccCcccHhhHhhcCcccCCCCCcccccccCCCC----ceeecCCcccc
Q 001149 147 SEKFYCTACNNVAIEVHP--HPIL------NVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSS----DLVSCKSCKTL 214 (1138)
Q Consensus 147 ~~~~~C~~C~~~~~~~~~--Hp~l------~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg----~l~~Cd~C~~~ 214 (1138)
.+-+.|..|++..+.... .|-+ ....|..|+ +|.+|+.+| +|++||.|+++
T Consensus 24 ~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-----------------~C~vC~~~~~~~~~ll~Cd~C~~~ 86 (112)
T 3v43_A 24 EELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK-----------------TCSSCRDQGKNADNMLFCDSCDRG 86 (112)
T ss_dssp CCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC-----------------CBTTTCCCCCTTCCCEECTTTCCE
T ss_pred hhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC-----------------ccccccCcCCCccceEEcCCCCCe
Confidence 355899999987543221 2211 234676666 799999864 89999999999
Q ss_pred ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 215 FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 215 f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
||..|+.+.+. ..+.+.|+|..|.++
T Consensus 87 yH~~Cl~p~l~------~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 87 FHMECCDPPLT------RMPKGMWICQICRPR 112 (112)
T ss_dssp ECGGGCSSCCS------SCCSSCCCCTTTSCC
T ss_pred eecccCCCCCC------CCCCCCeECCCCCCc
Confidence 99999876543 346679999999874
No 108
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.37 E-value=8.2e-08 Score=83.27 Aligned_cols=50 Identities=18% Similarity=0.439 Sum_probs=40.8
Q ss_pred CCCCcccccccCCCC-----ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 189 ADCSECYCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 189 ~d~~~~~C~~C~~gg-----~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.+.++..|.+|++|+ +||+||.|+++||..|+.+. ..+.+.|+|..|...
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--------~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--------YIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--------SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--------cCCCCCcCCccCcCc
Confidence 445567999999886 99999999999999997543 245689999999643
No 109
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.37 E-value=1.1e-07 Score=77.21 Aligned_cols=45 Identities=31% Similarity=0.851 Sum_probs=37.1
Q ss_pred cccccCCCC---ceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRSS---DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~gg---~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+|.+|+.+| +|++||.|++.||..|+.+.+. ..+.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~------~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY------EVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC------SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC------CCCCCcEECcCccc
Confidence 699999766 6999999999999999876432 24568999999965
No 110
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.37 E-value=1.7e-07 Score=87.65 Aligned_cols=50 Identities=26% Similarity=0.698 Sum_probs=40.7
Q ss_pred cCCCCCcccccccCCCCceeecC--CccccccccccccCCCcccccccccCCCceeecCC
Q 001149 187 KDADCSECYCVWCGRSSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 187 ~d~d~~~~~C~~C~~gg~l~~Cd--~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
...+.+++||.+|++||+||+|| .||++||..|+. +. ..+.+.|+|+.|.
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~-------L~-~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN-------LT-QPPYGKWECPWHQ 60 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT-------CS-SCCSSCCCCGGGB
T ss_pred CCcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc-------CC-cCCCCCEECCCCC
Confidence 34556778999999999999999 799999999975 22 3467899999774
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.33 E-value=1.4e-07 Score=85.72 Aligned_cols=51 Identities=25% Similarity=0.713 Sum_probs=41.6
Q ss_pred cccccccCCC-----CceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 193 ECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 193 ~~~C~~C~~g-----g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+.+|.+|+.+ +.|++||.|+++||+.|+.+.+....+ ..+.+.|+|..|..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~--~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEV--NDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHH--HCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccccccc--CCCCCCeeCccccc
Confidence 3589999988 789999999999999998877664321 24678999999954
No 112
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.33 E-value=1.1e-07 Score=86.16 Aligned_cols=47 Identities=19% Similarity=0.525 Sum_probs=39.5
Q ss_pred CcccccccCCCC-----ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~gg-----~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
++.+|.+|+.|| +||+||.|+++||..|+.+. ..+.+.|+|..|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~--------~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--------YIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS--------SCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC--------ccCCCceECccccCc
Confidence 456999999998 99999999999999997543 245689999999543
No 113
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.29 E-value=2.9e-06 Score=91.66 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=88.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHh-cccCCCceEEEeCcchH-HHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS-VNLGLRTALIVTPVNVL-HNWK 459 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~-~~~~~k~vLIV~P~sll-~qW~ 459 (1138)
.+++||.+++..+.. +...++...+|.|||.+...++...... +......+++++|...+ .|..
T Consensus 61 p~~~~q~~~i~~i~~--------------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 61 PVKKFESEILEAISQ--------------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp GGGGGHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc--------------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 378999999987742 4678899999999997766555443322 21112378889997654 4677
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
+.+...+........-+........ -....+|+|+|.+.+.... .. ...++++||+|
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~Ivv~Tpg~l~~~l--------------~~-~l~~~~~lVlD 183 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESIL--------PRPHASIMFCTVGVLLRKL--------------EA-GIRGISHVIVD 183 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEEC--------CCSSSEEEEEEHHHHHHHH--------------HH-CCTTCCEEEEC
T ss_pred HHHHHHhccccCceEEEeechhhcc--------CCCCCeEEEECHHHHHHHH--------------Hh-hhcCCcEEEEE
Confidence 7777666543221111111110000 0023458888887764321 01 12378999999
Q ss_pred CCcccCCcccHHH-HHHH----hcccCeEEEEecCCC
Q 001149 540 EAHMIKNTRADTT-QALK----QVKCQRRIALTGSPL 571 (1138)
Q Consensus 540 EaH~iKN~~S~~s-kal~----~l~~~~RllLTGTPl 571 (1138)
|||.. +...... ..++ .....+.+++|||+-
T Consensus 184 Eah~~-~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 184 EIHER-DINTDFLLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred CCccC-CcchHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 99973 1121111 1222 224567899999974
No 114
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=2.6e-07 Score=84.60 Aligned_cols=50 Identities=22% Similarity=0.623 Sum_probs=40.3
Q ss_pred CCCcccccccCCCCc---eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 190 DCSECYCVWCGRSSD---LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 190 d~~~~~C~~C~~gg~---l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.-++.+|.+|+.+++ ||+||.|++.||..|+.+.+. ..+.+.|+|+.|..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~------~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP------EIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS------SCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc------cCCCCCcCCccCcC
Confidence 344558999999985 999999999999999876542 34568999999943
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.29 E-value=3.7e-07 Score=79.11 Aligned_cols=46 Identities=28% Similarity=0.787 Sum_probs=37.2
Q ss_pred ccccccC---CCCceeecCCccccccccccccCCCcccccccccCC-CceeecCCc
Q 001149 194 CYCVWCG---RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS-CWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~---~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~-~W~C~~C~~ 245 (1138)
.+|.+|+ ++|+||+||.|+++||..||.+.+. ..+.+ .|+|+.|..
T Consensus 19 C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~------~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 19 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS------SVPSEDEWYCPECRN 68 (70)
T ss_dssp TSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCS------SCCSSSCCCCTTTSC
T ss_pred CCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcC------CCCCCCCcCCcCccC
Confidence 3677889 6899999999999999999876543 23456 999999964
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.28 E-value=3.2e-07 Score=87.71 Aligned_cols=76 Identities=22% Similarity=0.621 Sum_probs=55.0
Q ss_pred CCceeeccCCCcccccccccc------c--ccccCcccHhhHhhcCcccCCCCCcccccccCC---CCceeecCCccccc
Q 001149 147 SEKFYCTACNNVAIEVHPHPI------L--NVIVCKDCKCLLEKKMHVKDADCSECYCVWCGR---SSDLVSCKSCKTLF 215 (1138)
Q Consensus 147 ~~~~~C~~C~~~~~~~~~Hp~------l--~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~---gg~l~~Cd~C~~~f 215 (1138)
.+-+.|..|++..+....-+- . ....|..|+ +|.+|+. +|+|++||.|++.|
T Consensus 21 ~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-----------------~C~~C~~~~~~~~ll~Cd~C~~~y 83 (114)
T 2kwj_A 21 EELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK-----------------SCILCGTSENDDQLLFCDDCDRGY 83 (114)
T ss_dssp CCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC-----------------CCTTTTCCTTTTTEEECSSSCCEE
T ss_pred CCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC-----------------ccCcccccCCCCceEEcCCCCccc
Confidence 355999999987554322211 1 234566663 7999997 68999999999999
Q ss_pred cccccccCCCcccccccccCCCceeecCCc
Q 001149 216 CTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 216 ~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
|..|+.+.+. ..+.+.|+|+.|..
T Consensus 84 H~~Cl~ppl~------~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 84 HMYCLNPPVA------EPPEGSWSCHLCWE 107 (114)
T ss_dssp ETTTSSSCCS------SCCSSCCCCHHHHH
T ss_pred cccccCCCcc------CCCCCCeECccccc
Confidence 9999876542 34568999999943
No 117
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.20 E-value=6.9e-07 Score=85.05 Aligned_cols=45 Identities=24% Similarity=0.740 Sum_probs=37.5
Q ss_pred cccccCCCCc---eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRSSD---LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~gg~---l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+|.+|+.+|+ ++.||.|++.||..|+.+.+. ..+.+.|+|+.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~------~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK------SVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCS------SCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccc------cCCCCCcCCcCCcC
Confidence 7999999987 999999999999999876542 23568999999843
No 118
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.17 E-value=8.3e-07 Score=93.46 Aligned_cols=48 Identities=27% Similarity=0.735 Sum_probs=35.5
Q ss_pred CcccccccCC---CCceeecCCccccccccccccCCCcccccccccCC-CceeecCCc
Q 001149 192 SECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS-CWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~~---gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~-~W~C~~C~~ 245 (1138)
.+..|.+|+. +|.|++||.|+++||..|+.+++. ..+.+ .|+|+.|..
T Consensus 173 ~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~------~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 173 RVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS------SVPSEDEWYCPECRN 224 (226)
T ss_dssp TTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCC------SCCSSSCCCCGGGC-
T ss_pred CCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcc------cCCCCCCCCCcCCcC
Confidence 3458999996 789999999999999999876543 23456 999999964
No 119
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.16 E-value=5e-06 Score=101.38 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=57.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.+||||.+.+.-+++.+. .+..+++-..+|.|||+..+..+.. . ..++||++|.. +..||.+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~----------~~~~~~~~a~TGtGKT~~~l~p~l~---~----~~~v~i~~pt~~l~~q~~~ 65 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLR----------NNFLVALNAPTGSGKTLFSLLVSLE---V----KPKVLFVVRTHNEFYPIYR 65 (551)
T ss_dssp SCCHHHHHHHHHHHHHHH----------TTCEEEEECCTTSSHHHHHHHHHHH---H----CSEEEEEESSGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----------cCCcEEEECCCCccHHHHHHHHHHh---C----CCeEEEEcCCHHHHHHHHH
Confidence 579999999887766543 3467888899999999876655443 1 35899999965 6779999
Q ss_pred HHHHHCCCCCCCeEEEEecC
Q 001149 461 EFMKWRPSELKPLRVFMLED 480 (1138)
Q Consensus 461 E~~kw~p~~~~~l~V~~~~~ 480 (1138)
++.+..... .+++..+.+
T Consensus 66 ~~~~l~~~~--~~~~~~l~g 83 (551)
T 3crv_A 66 DLTKIREKR--NITFSFLVG 83 (551)
T ss_dssp HHTTCCCSS--CCCEEECCC
T ss_pred HHHHHhhhc--CccEEEEcc
Confidence 998764321 345555444
No 120
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.11 E-value=1.9e-06 Score=75.88 Aligned_cols=68 Identities=28% Similarity=0.680 Sum_probs=44.9
Q ss_pred cccccccccCcccHhhHhhcCcccCCCCCcccccccCCC---CceeecCCccccccccccccCCCcccccccccCCC-ce
Q 001149 164 PHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC-WQ 239 (1138)
Q Consensus 164 ~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~g---g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~-W~ 239 (1138)
.||.++..-|..|++.- +--.....|.+|+.+ +.||+||.|+++||..|+.+.+. ..+.+. |+
T Consensus 4 ~~~~~~~~~c~~c~~~~-------~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~------~~P~g~~W~ 70 (77)
T 3shb_A 4 GSPEFSGPSCKHCKDDV-------NRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS------SVPSEDEWY 70 (77)
T ss_dssp -----CCCSCTTTTTCT-------TSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCS------SCCSSSCCC
T ss_pred CCcccCCccccccCCCC-------CCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCccc------CCCCCCceE
Confidence 46777777788887321 112223357888776 67999999999999999876643 234456 99
Q ss_pred eecCC
Q 001149 240 CCCCS 244 (1138)
Q Consensus 240 C~~C~ 244 (1138)
|+.|.
T Consensus 71 C~~C~ 75 (77)
T 3shb_A 71 CPECR 75 (77)
T ss_dssp CTTTC
T ss_pred CcCcc
Confidence 99995
No 121
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.03 E-value=1.2e-05 Score=97.73 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=55.7
Q ss_pred HHHHHHHhh-cCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCce
Q 001149 782 LLDILTMCS-NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 860 (1138)
Q Consensus 782 L~eiL~~~~-~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~ 860 (1138)
+.+.|..+. ..+.++|||..+...++.+...|.. +. +.+.|.. .+|.+++++|..+ +.+
T Consensus 372 ~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--------------~~-~~~q~~~--~~~~~~l~~f~~~--~~i- 431 (540)
T 2vl7_A 372 YSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--------------IP-VIEENKK--TRHEEVLELMKTG--KYL- 431 (540)
T ss_dssp HHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--------------SC-EEESTTT--CCHHHHHHHHHTS--CCE-
T ss_pred HHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--------------Cc-eEecCCC--CcHHHHHHHHhcC--CeE-
Confidence 444444332 3467999999999988888776642 22 3455554 3688999999872 222
Q ss_pred EEEeeccccccCCCccc----CCEEEEEcCCCCcchHHHHHHHH
Q 001149 861 CTLISTRAGSLGINLHS----ANRVIIVDGSWNPTYDLQAIYRA 900 (1138)
Q Consensus 861 v~LiSTkaGg~GLNLt~----An~VIi~D~~WNP~~~~QAigR~ 900 (1138)
+|.+.+....+|||+.+ +..||++..|+-+..+..-..|.
T Consensus 432 l~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~ 475 (540)
T 2vl7_A 432 VMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRI 475 (540)
T ss_dssp EEEEC---------------CEEEEEEESCCCCCTTSHHHHHHH
T ss_pred EEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHH
Confidence 23347889999999997 78899999998655444433343
No 122
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.01 E-value=3.7e-06 Score=77.88 Aligned_cols=50 Identities=18% Similarity=0.579 Sum_probs=38.5
Q ss_pred CcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcchH
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLL 248 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~~ 248 (1138)
....|..|.++|.+|+||.|.+.||..|+.+... ..+ +.|+|+.|.|.++
T Consensus 29 vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~------~~p-~~w~C~~C~~~~~ 78 (98)
T 2lv9_A 29 TRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ------HIP-DTYLCERCQPRNL 78 (98)
T ss_dssp CCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTT------SCC-SSBCCTTTSSSCC
T ss_pred EEeECCCccCCCcEEEcCCCCCcCcCcCCCCCcc------CCC-CCEECCCCcCCCC
Confidence 3346788888999999999999999999754321 122 4799999998764
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.97 E-value=3.2e-06 Score=80.39 Aligned_cols=50 Identities=24% Similarity=0.691 Sum_probs=41.3
Q ss_pred CCCCcccccccCCCCce---eecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 189 ADCSECYCVWCGRSSDL---VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 189 ~d~~~~~C~~C~~gg~l---~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.+.++++|.+|+++|++ ++|+.|+++||..|+.+.+.+ ...+.|+|+.|.
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~------~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP------LKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT------TTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc------ccccCccCCcCC
Confidence 35678899999999998 999999999999998765421 246889999885
No 124
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.88 E-value=3.1e-06 Score=73.45 Aligned_cols=58 Identities=19% Similarity=0.563 Sum_probs=45.1
Q ss_pred CCCCCcccccccC--CCCceeecCCccccccccccccC-CCccc-----ccccccCCCceeecCCc
Q 001149 188 DADCSECYCVWCG--RSSDLVSCKSCKTLFCTTCVKRN-ISEAC-----LSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 188 d~d~~~~~C~~C~--~gg~l~~Cd~C~~~f~~~C~~~~-~~~~~-----~~~~~~~~~W~C~~C~~ 245 (1138)
..-.+|+.|.+|. ..++|+.|..|+|+||..|+.+. ...+. +........|.||-|..
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3345778999999 99999999999999999999973 22222 22345778899999964
No 125
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.80 E-value=1.1e-05 Score=69.86 Aligned_cols=47 Identities=26% Similarity=0.720 Sum_probs=37.0
Q ss_pred CCcccccccCC--CCceeecCC--cc-ccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 191 CSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~~--gg~l~~Cd~--C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
....|| +|+. .|++|+||+ |+ .-||..|+... ..+.+.|+|+.|...
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~--------~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--------TKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCS--------SCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcC--------cCCCCCEECCCCCcc
Confidence 345699 8997 799999999 99 59999997532 233588999999654
No 126
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.77 E-value=8.3e-06 Score=71.78 Aligned_cols=50 Identities=20% Similarity=0.539 Sum_probs=38.5
Q ss_pred CCCcccccccCCC---CceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 190 DCSECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 190 d~~~~~C~~C~~g---g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+....||.+|+.+ +.+|+||.|++.||..|+.+...+ .+.+.|+|+.|..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~------~~~~~w~C~~C~~ 67 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP------PEEMQWFCPKCAN 67 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC------CSSSCCCCTTTHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccC------CCCCCEEChhccC
Confidence 3445689999875 479999999999999997654322 2347899999954
No 127
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.74 E-value=6.2e-06 Score=68.85 Aligned_cols=46 Identities=24% Similarity=0.719 Sum_probs=35.8
Q ss_pred CCcccccccCC--CCceeecCC--cc-ccccccccccCCCcccccccccCCCceeecCCc
Q 001149 191 CSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 191 ~~~~~C~~C~~--gg~l~~Cd~--C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
....|| +|++ +|++|+||+ |+ .-||..|+... ..+.+.|+|+.|..
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~--------~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLT--------TKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--------SCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcc--------cCCCCCEECcCccC
Confidence 345599 9997 899999999 99 59999997532 22347899999954
No 128
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.74 E-value=1.5e-05 Score=72.25 Aligned_cols=47 Identities=26% Similarity=0.720 Sum_probs=37.0
Q ss_pred CCcccccccCC--CCceeecCC--cc-ccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 191 CSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~~--gg~l~~Cd~--C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
....|| +|+. +|++|+||+ |+ .-||..|+... ..+.+.|+|+.|...
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~--------~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--------TKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCS--------SCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcC--------cCCCCCEECcCccCc
Confidence 345699 9997 899999999 98 58999997532 223588999999754
No 129
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.67 E-value=9.3e-06 Score=68.44 Aligned_cols=45 Identities=24% Similarity=0.744 Sum_probs=36.1
Q ss_pred CcccccccCC--CCceeecCC--cc-ccccccccccCCCcccccccccCCCceeecCCc
Q 001149 192 SECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~~--gg~l~~Cd~--C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
...|| +|++ +|++|+||+ |+ .-||..|+... ..+.+.|+|+.|..
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~--------~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT--------YKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--------SCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcC--------cCCCCCEECcCccc
Confidence 34599 8997 899999999 88 89999997633 22458999999954
No 130
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.62 E-value=1.5e-05 Score=66.84 Aligned_cols=45 Identities=27% Similarity=0.764 Sum_probs=35.5
Q ss_pred CcccccccCC--CCceeecCC--cc-ccccccccccCCCcccccccccCCCceeecCCc
Q 001149 192 SECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~~--gg~l~~Cd~--C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
...|| +|+. +|++|.||+ |+ ..||..|+... ..+.+.|+|+.|..
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~--------~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--------TKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--------SCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCC--------cCCCCCEECcCccC
Confidence 45689 8986 899999999 88 79999997522 23458999999953
No 131
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.41 E-value=0.00033 Score=86.30 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=53.5
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
..||+|.+.+.-+++.+. .+..+|+...+|.|||+..+..+...+... .++++|++|+. +..|+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~----------~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~ 69 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQ----------KSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIK 69 (620)
T ss_dssp --CHHHHHHHHHHHHHHH----------HSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----------cCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHH
Confidence 469999999987766553 357789999999999998776655544331 35899999965 6679999
Q ss_pred HHHHHC
Q 001149 461 EFMKWR 466 (1138)
Q Consensus 461 E~~kw~ 466 (1138)
++.++.
T Consensus 70 el~~l~ 75 (620)
T 4a15_A 70 ELRSLS 75 (620)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 132
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.35 E-value=6.7e-05 Score=67.82 Aligned_cols=46 Identities=28% Similarity=0.813 Sum_probs=34.5
Q ss_pred CCCcccccccCC--CCceeecCC--cc-ccccccccccCCCcccccccccCCCceeec-CC
Q 001149 190 DCSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCC-CS 244 (1138)
Q Consensus 190 d~~~~~C~~C~~--gg~l~~Cd~--C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~-C~ 244 (1138)
+....|| +|+. .|++|+||+ |+ .-||..|+... ..+.+.|+|+. |.
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~--------~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLK--------QAPKGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCS--------SCTTSCCCSSHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCC--------cCCCCCccCChhhc
Confidence 3445599 8984 789999999 66 79999997532 22347999999 84
No 133
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.25 E-value=4.8e-05 Score=78.24 Aligned_cols=51 Identities=20% Similarity=0.485 Sum_probs=36.6
Q ss_pred CCCcccccccCC----CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~----gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+....|| +|+. +|.+|+||.|++-||..|+... ... ....+.|.|+.|.+.
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~----~~~-~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGIL----QSE-AELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCC----HHH-HTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCc----hhh-ccCccCeecCCCcch
Confidence 3455699 9986 4669999999999999996432 111 234578999999764
No 134
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.12 E-value=7.9e-05 Score=71.04 Aligned_cols=48 Identities=31% Similarity=0.794 Sum_probs=35.1
Q ss_pred ccccccCCC----------CceeecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 194 CYCVWCGRS----------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 194 ~~C~~C~~g----------g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
++|.+|.+| |+||.|+.|+++||..|+..... .....+.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~---~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLN---MTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHH---HHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhh---hhhccCCCccCccccC
Confidence 378888654 49999999999999999764321 1113456789998884
No 135
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.10 E-value=0.0061 Score=75.55 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=53.7
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHH
Q 001149 379 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHN 457 (1138)
Q Consensus 379 l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~q 457 (1138)
+...|-+.|++||..++. ...=.|+.-..|+|||.+++.+|..+...+ .++||++|.+. +.+
T Consensus 186 ~~~~LN~~Q~~AV~~al~-------------~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~----~~ILv~a~TN~AvD~ 248 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALS-------------QKELAIIHGPPGTGKTTTVVEIILQAVKQG----LKVLCCAPSNIAVDN 248 (646)
T ss_dssp SSTTCCHHHHHHHHHHHH-------------CSSEEEEECCTTSCHHHHHHHHHHHHHHTT----CCEEEEESSHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhc-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEcCchHHHHH
Confidence 345789999999998753 123467888899999999999998887653 58999999875 556
Q ss_pred HHHHHHHH
Q 001149 458 WKQEFMKW 465 (1138)
Q Consensus 458 W~~E~~kw 465 (1138)
-...+...
T Consensus 249 i~erL~~~ 256 (646)
T 4b3f_X 249 LVERLALC 256 (646)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 66666554
No 136
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.93 E-value=0.00037 Score=59.14 Aligned_cols=52 Identities=25% Similarity=0.535 Sum_probs=39.5
Q ss_pred CCCcccccccCC----CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~----gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+....||.+|+. ++..|.||.|..=||..|+.....+ ....+.|.|..|.++
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPAR-----AEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTG-----GGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhH-----hcCCCcEECCCCcCc
Confidence 455669999984 6789999999999999997554322 123478999999764
No 137
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=96.82 E-value=0.00026 Score=67.20 Aligned_cols=48 Identities=31% Similarity=0.692 Sum_probs=35.7
Q ss_pred ccccccC---------CCCceeecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 194 CYCVWCG---------RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 194 ~~C~~C~---------~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.+|.+|. ++|+||.|+.|++.||..||.. ++.. ......+.|+|.-|.
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~--~~~~-~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF--SPEL-TVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC--CHHH-HHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC--CHHH-HHHhhccccccccCC
Confidence 3788884 4579999999999999999753 2222 224467899999985
No 138
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.49 E-value=0.013 Score=71.43 Aligned_cols=132 Identities=19% Similarity=0.099 Sum_probs=83.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHH
Q 001149 380 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 459 (1138)
Q Consensus 380 ~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~ 459 (1138)
...|-+.|+.++..+. ...-.++.-..|+|||.++.+++..+... ..++++++|........
T Consensus 187 ~~~L~~~Q~~Av~~~~--------------~~~~~~I~G~pGTGKTt~i~~l~~~l~~~----g~~Vl~~ApT~~Aa~~L 248 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA--------------GHRLVVLTGGPGTGKSTTTKAVADLAESL----GLEVGLCAPTGKAARRL 248 (574)
T ss_dssp TTTCCHHHHHHHHHHT--------------TCSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--------------hCCEEEEEcCCCCCHHHHHHHHHHHHHhc----CCeEEEecCcHHHHHHh
Confidence 4568899999998763 23567888999999999888877666543 35899999998777655
Q ss_pred HHHHHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEc
Q 001149 460 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 539 (1138)
Q Consensus 460 ~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlD 539 (1138)
.|... .....++ .+.. . .. +.|.. . ..-...+|+||||
T Consensus 249 ~e~~~--------~~a~Tih------------~ll~---~--~~-~~~~~-----~-----------~~~~~~~dvlIID 286 (574)
T 3e1s_A 249 GEVTG--------RTASTVH------------RLLG---Y--GP-QGFRH-----N-----------HLEPAPYDLLIVD 286 (574)
T ss_dssp HHHHT--------SCEEEHH------------HHTT---E--ET-TEESC-----S-----------SSSCCSCSEEEEC
T ss_pred Hhhhc--------ccHHHHH------------HHHc---C--Cc-chhhh-----h-----------hcccccCCEEEEc
Confidence 55321 0111111 0000 0 00 01110 0 0001268999999
Q ss_pred CCcccCCcccHHHHHHHhcccCeEEEEecCCCCC
Q 001149 540 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQN 573 (1138)
Q Consensus 540 EaH~iKN~~S~~skal~~l~~~~RllLTGTPlqN 573 (1138)
|+|.+-. ......+..+....+++|.|-|-|.
T Consensus 287 Easml~~--~~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 287 EVSMMGD--ALMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp CGGGCCH--HHHHHHHTTSCTTCEEEEEECTTSC
T ss_pred CccCCCH--HHHHHHHHhCcCCCEEEEEeccccc
Confidence 9999843 2445556666778899999999884
No 139
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.46 E-value=0.037 Score=68.19 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=49.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchH-HHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll-~qW~ 459 (1138)
..|-+.|.++|..++. ..-.++.-..|+|||.++..++..+... ...++||++|.+.. .+-.
T Consensus 179 ~~ln~~Q~~av~~~l~--------------~~~~li~GppGTGKT~~~~~~i~~l~~~---~~~~ilv~a~tn~A~~~l~ 241 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ--------------RPLSLIQGPPGTGKTVTSATIVYHLARQ---GNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp CCCCHHHHHHHHHHHT--------------CSEEEEECCTTSCHHHHHHHHHHHHHTS---SSCCEEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--------------CCCeEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEeCcHHHHHHHH
Confidence 4588999999987642 2356778899999999998888776542 24689999998765 4555
Q ss_pred HHHHH
Q 001149 460 QEFMK 464 (1138)
Q Consensus 460 ~E~~k 464 (1138)
..+.+
T Consensus 242 ~~l~~ 246 (624)
T 2gk6_A 242 EKIHQ 246 (624)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55544
No 140
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.051 Score=68.71 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=50.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchH-HHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HNWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll-~qW~ 459 (1138)
..|-+.|.++|..++. +.-.++--..|+|||.++..++..+.... ..++||++|.+.. .+-.
T Consensus 359 ~~Ln~~Q~~Av~~~l~--------------~~~~lI~GppGTGKT~~i~~~i~~l~~~~---~~~ILv~a~tn~A~d~l~ 421 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ--------------RPLSLIQGPPGTGKTVTSATIVYHLSKIH---KDRILVCAPSNVAVDHLA 421 (802)
T ss_dssp CCCCHHHHHHHHHHTT--------------CSEEEEECSTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc--------------CCCEEEECCCCCCHHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHH
Confidence 4578999999987631 23467888999999999988887766531 3689999998865 4555
Q ss_pred HHHHHH
Q 001149 460 QEFMKW 465 (1138)
Q Consensus 460 ~E~~kw 465 (1138)
..+.+.
T Consensus 422 ~rL~~~ 427 (802)
T 2xzl_A 422 AKLRDL 427 (802)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 556553
No 141
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.42 E-value=0.032 Score=70.52 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=48.9
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-HHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWK 459 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-qW~ 459 (1138)
..|-+.|.++|..++. +.-.++.-..|+|||.++..++..+... ..+++||++|.+... +-.
T Consensus 355 ~~Ln~~Q~~Av~~~l~--------------~~~~lI~GppGTGKT~ti~~~i~~l~~~---~~~~ilv~a~tn~A~~~l~ 417 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ--------------RPLSLIQGPPGTGKTVTSATIVYHLARQ---GNGPVLVCAPSNIAVDQLT 417 (800)
T ss_dssp CCCCHHHHHHHHHHHT--------------SSEEEEECCTTSCHHHHHHHHHHHHHTT---CSSCEEEEESSHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcc--------------CCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHH
Confidence 4578999999987642 2346788899999999998888777643 246899999988654 444
Q ss_pred HHHHH
Q 001149 460 QEFMK 464 (1138)
Q Consensus 460 ~E~~k 464 (1138)
..+..
T Consensus 418 ~~l~~ 422 (800)
T 2wjy_A 418 EKIHQ 422 (800)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44443
No 142
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.20 E-value=0.0018 Score=55.57 Aligned_cols=54 Identities=20% Similarity=0.437 Sum_probs=38.3
Q ss_pred cccCCCCCcccccccCC---CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 185 HVKDADCSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 185 ~~~d~d~~~~~C~~C~~---gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..++.+...-|| +|+. |+..|.||.|..=||..|+..... ...+.|.|+.|.++
T Consensus 11 ~~~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-------~~~~~~~C~~C~~s 67 (68)
T 3o70_A 11 RENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-------NVPEVFVCQKCRDS 67 (68)
T ss_dssp ---CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-------SCCSSCCCHHHHTC
T ss_pred cccCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-------cCCCcEECCCCCCC
Confidence 345666666788 8884 456999999999999999754432 11268999999654
No 143
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.16 E-value=0.0019 Score=55.72 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=34.5
Q ss_pred CCcccccccC--CCCceeecCCc--c-ccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 191 CSECYCVWCG--RSSDLVSCKSC--K-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~--~gg~l~~Cd~C--~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
....||. |. +.|++|.||+| | .-||..|+.... .+.+.|+|+.|.+.
T Consensus 4 ~~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~--------~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTE--------APKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSS--------CCSSCCCCHHHHHH
T ss_pred CCCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCc--------CCCCCEECCCCCcc
Confidence 3445774 76 46799999995 3 789999976432 23589999999654
No 144
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.04 E-value=0.021 Score=67.66 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=49.0
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 381 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 381 ~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
..|-+-|.+++..+...+. ......++--..|+|||..+.+++..+...+ .+.+++++|.+....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~---------~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~---~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIK---------EKKHHVTINGPAGTGATTLTKFIIEALISTG---ETGIILAAPTHAAKK 88 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHH---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTT---CCCEEEEESSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHh---------cCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC---CceEEEecCcHHHHH
Confidence 4688999999987765432 1223678889999999998888888776553 257999999877653
No 145
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.91 E-value=0.003 Score=55.92 Aligned_cols=51 Identities=22% Similarity=0.598 Sum_probs=36.8
Q ss_pred CCCcccccccCC----CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~----gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
|...-|| +|+. ++..|.||.|..=||..|+.....+ ....+.|.|+.|.+.
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEEN-----AVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHH-----HTTCSBBCCTTTTTT
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccc-----ccCCCeEECCCcccc
Confidence 3344577 7765 6789999999999999997543211 122478999999765
No 146
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.74 E-value=0.0026 Score=56.21 Aligned_cols=53 Identities=17% Similarity=0.422 Sum_probs=37.2
Q ss_pred CcccccccCC---CCceeecC--CccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGR---SSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~---gg~l~~Cd--~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..-|| +|+. +|..|.|| .|..=||..|+.....+.... ....+.|+|+.|.+.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~-~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGN-PPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSC-SCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEcccccccccc-ccCCCCEECCCCCcc
Confidence 34588 7985 48999999 899999999976543322000 022478999999654
No 147
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.64 E-value=0.034 Score=68.63 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=62.0
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HH
Q 001149 378 SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LH 456 (1138)
Q Consensus 378 ~l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~ 456 (1138)
.+...|-|.|.++|.. ..+..++-...|+|||.+++.-+..++.........+|+|++++. ..
T Consensus 5 ~~~~~Ln~~Q~~av~~----------------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~ 68 (647)
T 3lfu_A 5 YLLDSLNDKQREAVAA----------------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAA 68 (647)
T ss_dssp HHHTTCCHHHHHHHTC----------------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHH
T ss_pred HhhhcCCHHHHHHHhC----------------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHH
Confidence 3456789999999951 234566677899999999999998888764444468999998765 44
Q ss_pred HHHHHHHHHCCCCCCCeEEEEecC
Q 001149 457 NWKQEFMKWRPSELKPLRVFMLED 480 (1138)
Q Consensus 457 qW~~E~~kw~p~~~~~l~V~~~~~ 480 (1138)
+-.+.+.+.++.....+.+..+|+
T Consensus 69 e~~~rl~~~~~~~~~~~~v~Tfhs 92 (647)
T 3lfu_A 69 EMRHRIGQLMGTSQGGMWVGTFHG 92 (647)
T ss_dssp HHHHHHHHHHCSCCTTCEEEEHHH
T ss_pred HHHHHHHHHhccccCCcEEEcHHH
Confidence 666667776554434566666654
No 148
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.55 E-value=0.004 Score=54.08 Aligned_cols=52 Identities=23% Similarity=0.544 Sum_probs=37.8
Q ss_pred CCCCCcccccccCCC---C-ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 188 DADCSECYCVWCGRS---S-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 188 d~d~~~~~C~~C~~g---g-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+++....|| +|+.. | ..|.||.|..=||..|+.....+ ...+.|+|+.|.++
T Consensus 11 ~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~------~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 11 GVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNAD------ALPSKFLCFRCIEL 66 (72)
T ss_dssp SSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTS------CCCSCCCCHHHHHH
T ss_pred CCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccc------cCCCcEECCCccCC
Confidence 345556689 69853 4 59999999999999997644321 12378999999654
No 149
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.35 E-value=0.0038 Score=54.67 Aligned_cols=51 Identities=24% Similarity=0.620 Sum_probs=36.0
Q ss_pred CCCcccccccCC----CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~----gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+...-|| +|+. ++..|.||.|..=||..|+.....+ ....+.|.|+.|.+.
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~-----~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEE-----APDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTT-----GGGBSSCCCHHHHHH
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccc-----cCCCCEEECCCCccc
Confidence 3344466 6764 5689999999999999997644322 123368999999654
No 150
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.16 E-value=0.043 Score=66.35 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=48.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.++|||.+.+.-+.+.+. .+..+|+-..+|.|||+..+..+.. . ..++||++|+. +..||.+
T Consensus 7 ~~r~~Q~~~~~~v~~~~~----------~~~~~~~~a~TGtGKT~~~l~~~~~---~----~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALK----------HGKTLLLNAKPGLGKTVFVEVLGMQ---L----KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp --CCHHHHHHHHHHHHHH----------TTCEEEEECCTTSCHHHHHHHHHHH---H----TCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----------cCCCEEEEcCCCCcHHHHHHHHHHh---C----CCcEEEEcCCHHHHHHHHH
Confidence 689999999876665442 3467888999999999865544322 1 35899999965 6779999
Q ss_pred HHHHH
Q 001149 461 EFMKW 465 (1138)
Q Consensus 461 E~~kw 465 (1138)
++.+.
T Consensus 70 ~~~~l 74 (540)
T 2vl7_A 70 NAKLL 74 (540)
T ss_dssp HHGGG
T ss_pred HHHhc
Confidence 99874
No 151
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=95.05 E-value=0.0063 Score=52.18 Aligned_cols=49 Identities=16% Similarity=0.444 Sum_probs=33.9
Q ss_pred ccccccC---CCCceeecCC--ccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 194 CYCVWCG---RSSDLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~---~gg~l~~Cd~--C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
-|| +|+ ++|..|.||+ |..=||..|+...-.+.. .....+.|+|+.|..
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~--~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGE--SAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTS--CCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCccccc--ccCCCCcEECcCccC
Confidence 367 675 4689999996 999999999754332221 122235799999964
No 152
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.91 E-value=0.12 Score=63.45 Aligned_cols=153 Identities=16% Similarity=0.075 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH-HHHHH
Q 001149 384 KAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN-WKQEF 462 (1138)
Q Consensus 384 rphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q-W~~E~ 462 (1138)
-+.|+.++.-+. .+.-.++.-..|+|||.++..++..+.........++++++|...... -.+.+
T Consensus 151 ~~~Q~~Ai~~~l--------------~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~ 216 (608)
T 1w36_D 151 INWQKVAAAVAL--------------TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 (608)
T ss_dssp CCHHHHHHHHHH--------------TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh--------------cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHH
Confidence 478999987653 235678889999999988777776665431112348999999876654 33333
Q ss_pred HHHCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCc
Q 001149 463 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAH 542 (1138)
Q Consensus 463 ~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH 542 (1138)
..+.... ++......... .-..|...+ +... .....+. ........+++||+|||+
T Consensus 217 ~~~~~~l--~l~~~~~~~~~----------------~~~~Tih~l--l~~~--~~~~~~~--~~~~~~l~~d~lIIDEAs 272 (608)
T 1w36_D 217 GKALRQL--PLTDEQKKRIP----------------EDASTLHRL--LGAQ--PGSQRLR--HHAGNPLHLDVLVVDEAS 272 (608)
T ss_dssp THHHHHS--SCCSCCCCSCS----------------CCCBTTTSC--C---------------CTTSCCSCSEEEECSGG
T ss_pred HHHHhcC--CCCHHHHhccc----------------hhhhhhHhh--hccC--CCchHHH--hccCCCCCCCEEEEechh
Confidence 3321100 00000000000 000000000 0000 0000000 000011268999999999
Q ss_pred ccCCcccHHHHHHHhcccCeEEEEecCCCCCChh
Q 001149 543 MIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 576 (1138)
Q Consensus 543 ~iKN~~S~~skal~~l~~~~RllLTGTPlqNnl~ 576 (1138)
.+. .......+..+....+++|.|-|-|--+.
T Consensus 273 ml~--~~~~~~Ll~~l~~~~~liLvGD~~QL~~V 304 (608)
T 1w36_D 273 MID--LPMMSRLIDALPDHARVIFLGDRDQLASV 304 (608)
T ss_dssp GCB--HHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred hCC--HHHHHHHHHhCCCCCEEEEEcchhhcCCC
Confidence 774 23455667777888899999999885443
No 153
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=94.44 E-value=0.0058 Score=57.11 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=36.2
Q ss_pred cccccccCCC----CceeecC-CccccccccccccCCCccccccc--ccCCCceeecCCc
Q 001149 193 ECYCVWCGRS----SDLVSCK-SCKTLFCTTCVKRNISEACLSDE--VQASCWQCCCCSP 245 (1138)
Q Consensus 193 ~~~C~~C~~g----g~l~~Cd-~C~~~f~~~C~~~~~~~~~~~~~--~~~~~W~C~~C~~ 245 (1138)
...|.+|... |+.+.|| .|..=||..|+... ...+..+ .+.+.|.|+.|..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt--~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMT--ESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCC--HHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcC--HHHHHhhccCCCCCEECccccC
Confidence 3478888755 7788887 89999999996533 2222222 3557899999954
No 154
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=94.38 E-value=0.0064 Score=72.07 Aligned_cols=56 Identities=21% Similarity=0.525 Sum_probs=38.9
Q ss_pred cccCCCCCcccccccCC----CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 185 HVKDADCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 185 ~~~d~d~~~~~C~~C~~----gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..++.+....|| +|+. +|..|+||.|..=||..|+...-.+ ....+.|.|+.|.+.
T Consensus 29 ~s~~~~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 29 ASAPPPPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHH-----AVDIDLYHCPNCAVL 88 (488)
T ss_dssp ---CCCCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGG-----GGGEEEBCCHHHHHH
T ss_pred CCCcCCCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCccc-----ccCCCEEECCCCcCC
Confidence 345666666788 7874 6889999999999999997533221 122367999999753
No 155
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.90 E-value=0.2 Score=52.74 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=26.5
Q ss_pred EEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 416 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 416 LADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
+.-+||.|||..++..+..+... .+++||+.|.
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~----g~kVli~k~~ 65 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFA----KQHAIVFKPC 65 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHT----TCCEEEEECC
T ss_pred EECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEec
Confidence 57999999999888887766543 3588999886
No 156
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.84 E-value=0.67 Score=53.27 Aligned_cols=157 Identities=16% Similarity=0.116 Sum_probs=85.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW~~ 460 (1138)
.|.|||+.-+..|.. ..-.++.-.-+.|||..+.+++...... .+...++++.|..- ...+.+
T Consensus 163 ~L~p~Qk~il~~l~~--------------~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~ 226 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS--------------KRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLD 226 (385)
T ss_dssp CCCHHHHHHHHHHHH--------------SSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc--------------CcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHH
Confidence 589999998876631 1337788889999999877766553332 22357899999653 333446
Q ss_pred HHHHHC---CCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEE-EEccchhhcccccccccchhhHHHHhhhhccCCCEE
Q 001149 461 EFMKWR---PSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF-LIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 536 (1138)
Q Consensus 461 E~~kw~---p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~Vv-Iity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlV 536 (1138)
++..++ |....+. +....... + .+ .++..+ +.+- + -..+....++++
T Consensus 227 ~i~~mi~~~P~ll~~~-~~~~~~~~-------I-~f-~nGs~i~~lsa-------------~------~~slrG~~~~~v 277 (385)
T 2o0j_A 227 RTKQAIELLPDFLQPG-IVEWNKGS-------I-EL-DNGSSIGAYAS-------------S------PDAVRGNSFAMI 277 (385)
T ss_dssp HHHHHHHHSCTTTSCC-EEEECSSE-------E-EE-TTSCEEEEEEC-------------S------HHHHHTSCCSEE
T ss_pred HHHHHHHhChHhhhhh-hccCCccE-------E-Ee-CCCCEEEEEEC-------------C------CCCccCCCCCEE
Confidence 666553 3211110 10000000 0 00 111111 1110 0 011223478899
Q ss_pred EEcCCcccCCcccHHHHHHHh-cc--cCeEEEEecCCCCCChhHHHHHhhhhc
Q 001149 537 VCDEAHMIKNTRADTTQALKQ-VK--CQRRIALTGSPLQNNLMEYYCMVDFVR 586 (1138)
Q Consensus 537 IlDEaH~iKN~~S~~skal~~-l~--~~~RllLTGTPlqNnl~El~~ll~fL~ 586 (1138)
|+||+|.+++.. ....++.. +. ...++++++||-..+ -+|.+.....
T Consensus 278 iiDE~a~~~~~~-el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a~ 327 (385)
T 2o0j_A 278 YIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAAV 327 (385)
T ss_dssp EEESGGGSTTHH-HHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHHH
T ss_pred EechhhhcCCCH-HHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHHh
Confidence 999999998732 34444433 22 357899999997554 5566555443
No 157
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.78 E-value=0.04 Score=56.78 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.2
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
=.++.-.||.|||..++.++..+... .++++++.|.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~----g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLG----KKKVAVFKPK 40 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----TCEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeec
Confidence 35678899999998888777665433 2478888887
No 158
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.48 E-value=0.31 Score=50.46 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=28.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
+.=.++.-.||.|||..++.++..+... .++++|+.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~----g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA----KQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEec
Confidence 3445667899999998888877766433 3588998887
No 159
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=93.47 E-value=0.025 Score=58.04 Aligned_cols=50 Identities=16% Similarity=0.594 Sum_probs=33.9
Q ss_pred cccccCC-------CCceeecCCccccccccccccCCCccccccc---ccCCCceeecCCcc
Q 001149 195 YCVWCGR-------SSDLVSCKSCKTLFCTTCVKRNISEACLSDE---VQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~-------gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~---~~~~~W~C~~C~~~ 246 (1138)
||.+|+. ++..|+||.|.+=||..|+... ...+..+ .+...|.|+.|.+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~--~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLS--DEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCC--HHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccC--HHHHHHhhcCCCCCeeECcCCCCC
Confidence 6777763 3459999999999999997432 2111111 12358999999765
No 160
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.33 E-value=0.048 Score=50.87 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=28.0
Q ss_pred ccccCCCCceeecCCccccccccccccCCCcccccccccCCCcee
Q 001149 196 CVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 240 (1138)
Q Consensus 196 C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C 240 (1138)
|..|+.... +.|..||++||..|+...+-. .+.+.|.|
T Consensus 61 C~~C~k~~~-~~C~~Cp~sfC~~c~~g~l~~------~~~~~~~c 98 (107)
T 4gne_A 61 CDECSSAAV-SFCEFCPHSFCKDHEKGALVP------SALEGRLC 98 (107)
T ss_dssp CTTTCSBCC-EECSSSSCEECTTTCTTSCEE------CTTTTCEE
T ss_pred CCcCCCCCC-cCcCCCCcchhhhccCCccee------cCCCCcee
Confidence 456666555 899999999999998655432 34578977
No 161
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.27 E-value=0.66 Score=56.61 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=84.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~ 460 (1138)
.|.|||+.-+..|+. ..-.++.-.-|.|||..+.+++...+... +...++++.|.. .......
T Consensus 163 ~l~p~Q~~i~~~l~~--------------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~ 226 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS--------------KRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLD 226 (592)
T ss_dssp CCCHHHHHHHHHHHH--------------CSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHhhcc--------------ccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHH
Confidence 589999998876632 13467778999999988766655444332 234789999964 3334556
Q ss_pred HHHHHCCCC---CCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEE
Q 001149 461 EFMKWRPSE---LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 537 (1138)
Q Consensus 461 E~~kw~p~~---~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVI 537 (1138)
.+..++... .... ........ + .+ .++..+... + .+. ..+....++++|
T Consensus 227 ~i~~~i~~~p~~~~~~-~~~~~~~~-------i-~~-~nGs~i~~~-------s-----~~~------~~lrG~~~~~~i 278 (592)
T 3cpe_A 227 RTKQAIELLPDFLQPG-IVEWNKGS-------I-EL-DNGSSIGAY-------A-----SSP------DAVRGNSFAMIY 278 (592)
T ss_dssp HHHHHHTTSCTTTSCC-EEEECSSE-------E-EE-TTSCEEEEE-------E-----CCH------HHHHHSCCSEEE
T ss_pred HHHHHHHhChHhhccc-cccCCccE-------E-Ee-cCCCEEEEE-------e-----CCC------CCccCCCcceEE
Confidence 777665321 1110 00000000 0 00 011111110 0 000 112233789999
Q ss_pred EcCCcccCCcccHHHHHHHhc-c--cCeEEEEecCCCCCChhHHHHHh
Q 001149 538 CDEAHMIKNTRADTTQALKQV-K--CQRRIALTGSPLQNNLMEYYCMV 582 (1138)
Q Consensus 538 lDEaH~iKN~~S~~skal~~l-~--~~~RllLTGTPlqNnl~El~~ll 582 (1138)
+||+|.+++.. .+..++... . ...++++++||-.. .-+|.++
T Consensus 279 iDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~--~~~y~~~ 323 (592)
T 3cpe_A 279 IEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL--NHFYDIW 323 (592)
T ss_dssp EETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT--SHHHHHH
T ss_pred EehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc--hhHHHHH
Confidence 99999998742 444555433 2 34789999999654 3344443
No 162
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.12 E-value=0.014 Score=51.24 Aligned_cols=53 Identities=19% Similarity=0.468 Sum_probs=36.8
Q ss_pred CCcccccccCC---CCceeecCCccccccccccccCCCccccccc-ccCCCceeecCCcc
Q 001149 191 CSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDE-VQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~~---gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~-~~~~~W~C~~C~~~ 246 (1138)
.+.-|| +|+. ++..|.||.|..=||..|+.....+. ..+ ...+.|.|+.|.+.
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~--~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARG--RLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHH--HHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhh--hhccCCCCeEECcCCcCc
Confidence 334688 7875 46899999999999999975432211 111 13578999999643
No 163
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.76 E-value=0.73 Score=57.05 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=59.2
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch-HHHHHH
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWKQ 460 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl-l~qW~~ 460 (1138)
.|-|.|.++|.. ..+..++-...|+|||.+.+.-+..++.........+|+|+.++- ...-.+
T Consensus 2 ~L~~~Q~~av~~----------------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~ 65 (673)
T 1uaa_A 2 RLNPGQQQAVEF----------------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKE 65 (673)
T ss_dssp CCCHHHHHHHHC----------------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHhC----------------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHH
Confidence 367889999852 234566778999999999998888887653334568999997654 456667
Q ss_pred HHHHHCCCC-CCCeEEEEecCc
Q 001149 461 EFMKWRPSE-LKPLRVFMLEDV 481 (1138)
Q Consensus 461 E~~kw~p~~-~~~l~V~~~~~~ 481 (1138)
.+.+.++.. ...+.|..+|+.
T Consensus 66 Rl~~~l~~~~~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 66 RVGQTLGRKEARGLMISTFHTL 87 (673)
T ss_dssp HHHHHSCTTTTTTSEEEEHHHH
T ss_pred HHHHHcCcccccCCEEEeHHHH
Confidence 777776542 234677777653
No 164
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=92.65 E-value=0.013 Score=49.69 Aligned_cols=50 Identities=24% Similarity=0.598 Sum_probs=35.8
Q ss_pred cccccccCC----CCceeecC-CccccccccccccCCCcccccccc--cCCCceeecCC
Q 001149 193 ECYCVWCGR----SSDLVSCK-SCKTLFCTTCVKRNISEACLSDEV--QASCWQCCCCS 244 (1138)
Q Consensus 193 ~~~C~~C~~----gg~l~~Cd-~C~~~f~~~C~~~~~~~~~~~~~~--~~~~W~C~~C~ 244 (1138)
..-|.+|.. +...|.|| .|.+=||..|+... +..+..+. +.+.|.|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt--~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMT--ETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCC--HHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCC--HHHHHHhhccCCCcEECcCcc
Confidence 346889985 34589999 89999999997543 43343333 56789999883
No 165
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.36 E-value=0.19 Score=53.43 Aligned_cols=39 Identities=23% Similarity=0.120 Sum_probs=28.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
.|.=.++.-+||.|||..++.++..+... ..+++++.|.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~----g~kVli~~~~ 49 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA----DVKYLVFKPK 49 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT----TCCEEEEEEC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc----CCEEEEEEec
Confidence 34445567999999999998888776544 3478888775
No 166
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.14 E-value=0.12 Score=57.16 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=29.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
..+.+.+|.-+.|+|||..|-++...+.........+++.|-+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3445689999999999999988877765543322234444443
No 167
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.00 E-value=0.33 Score=56.70 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=64.4
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHHHHHHHCCCCCCCeEEEEecCcchhHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELL 490 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~E~~kw~p~~~~~l~V~~~~~~~~~~r~~~l 490 (1138)
.-.++.-.-|.|||.....++. .++.|||+|.. +...|.+.+.+-...
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~---------~~~~lVlTpT~~aa~~l~~kl~~~~~~---------------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN---------FEEDLILVPGRQAAEMIRRRANASGII---------------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC---------TTTCEEEESCHHHHHHHHHHHTTTSCC----------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHhc---------cCCeEEEeCCHHHHHHHHHHhhhcCcc----------------------
Confidence 3456788999999987655441 25789999975 566788887432100
Q ss_pred HHHhhcCCEEEEccchhhcccccccccchhhHHHHhhhhccCCCEEEEcCCcccCCcccHHHHHHHhcccCeEEEEecCC
Q 001149 491 AKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSP 570 (1138)
Q Consensus 491 ~~~~~~~~VvIity~~~r~l~~~~~~~~~~~~~~~~~~l~~~~dlVIlDEaH~iKN~~S~~skal~~l~~~~RllLTGTP 570 (1138)
.....-+.|++.|-.-. ...-...+++||+||+..+ +...+...+..++. .+++|.|=|
T Consensus 211 ----~~~~~~V~T~dsfL~~~--------------~~~~~~~~d~liiDE~sm~--~~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLMNY--------------GKGARCQFKRLFIDEGLML--HTGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ----CCCTTTEEEHHHHHHTT--------------TSSCCCCCSEEEEETGGGS--CHHHHHHHHHHTTC-SEEEEEECT
T ss_pred ----ccccceEEEeHHhhcCC--------------CCCCCCcCCEEEEeCcccC--CHHHHHHHHHhCCC-CEEEEecCc
Confidence 00011234444432100 0000013799999999877 23334444444455 899999999
Q ss_pred CC
Q 001149 571 LQ 572 (1138)
Q Consensus 571 lq 572 (1138)
-|
T Consensus 270 ~Q 271 (446)
T 3vkw_A 270 QQ 271 (446)
T ss_dssp TS
T ss_pred cc
Confidence 77
No 168
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.95 E-value=0.67 Score=49.28 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=26.0
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
-++.-.||.|||..+|..+..+... .++++|+-|.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~----g~kvli~kp~ 56 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYA 56 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT----TCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC----CCeEEEEeec
Confidence 4557899999998888877665433 3578888876
No 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.34 E-value=1.4 Score=49.44 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 383 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 383 LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
++|+|.+.++.+...+. .+..+...+|.-+.|.|||..|.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~-------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQ-------AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHH-------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHH-------cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 68999999887765442 2233456888999999999999998887754
No 170
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=89.84 E-value=0.11 Score=61.17 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=43.7
Q ss_pred CceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCccccccccccccCCCcc
Q 001149 148 EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEA 227 (1138)
Q Consensus 148 ~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~ 227 (1138)
+...|-.||+.-++..... |+---|+.=...++++.-.+...+ .+...|+||.|..=||..|+......
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~kk~~~~~n---------~~~~mI~CD~C~~WfH~~CVgi~~~~- 79 (528)
T 3pur_A 11 ESDRCGGCGKFTHEDDLIA-LEEEKKKEKEKPLMSKKKSHHHKK---------NDFQWIGCDSCQTWYHFLCSGLEQFE- 79 (528)
T ss_dssp CSCCCTTTCCCC--------------------CCSCCCTTTTTT---------STTSEEECTTTCCEEEGGGTTCCGGG-
T ss_pred ccchhhcccCCCchhhHHH-HHHHhhhhhhhccccccccccCCC---------cCCCEEECCCCCcCCCCcCCCCChhH-
Confidence 4578999998765543222 222224433334444443333211 44568999999999999996433211
Q ss_pred cccccccCCCceeecCCcc
Q 001149 228 CLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 228 ~~~~~~~~~~W~C~~C~~~ 246 (1138)
....+.|+|+.|.+.
T Consensus 80 ----a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 80 ----YYLYEKFFCPKCVPH 94 (528)
T ss_dssp ----TTTEEECCCTTTHHH
T ss_pred ----hcCCCeEECcCCcCC
Confidence 223478999999653
No 171
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.81 E-value=2.2 Score=47.33 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=27.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcch
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV 454 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sl 454 (1138)
.+.+.+|.-+.|+|||..+-++...+... ..+++.|-...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT----TCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEHHHH
Confidence 45688999999999998887777665433 234555443333
No 172
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=88.17 E-value=0.21 Score=40.11 Aligned_cols=38 Identities=21% Similarity=0.526 Sum_probs=29.2
Q ss_pred CCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 201 RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 201 ~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+|+..|.||.|..=||..|+..... ...+.|.|+.|..
T Consensus 14 ~~~~MI~Cd~C~~W~H~~Cvgi~~~-------~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 14 AGRPMIECNECHTWIHLSCAKIRKS-------NVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCEEECTTTCCEEETTTTTCCGG-------GCCSSCCCHHHHT
T ss_pred CCCCEEEcCCCCccccccccCCCcc-------cCCCcEECcCCCC
Confidence 5679999999999999999654321 1137899999953
No 173
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.24 E-value=1.9 Score=45.25 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=24.7
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
-++.-+||.|||..++-.+..+... .++++|+-|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~----g~kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYA----KQKVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc----CCceEEEEec
Confidence 4556889999997777776554332 3578888886
No 174
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.95 E-value=0.25 Score=39.73 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=26.6
Q ss_pred CCceeecC-CccccccccccccCCCcccccccccCCCceeecCC
Q 001149 202 SSDLVSCK-SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 202 gg~l~~Cd-~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
++..|.|| .|..=||..|+..... . ...+.|.|+.|.
T Consensus 15 ~~~mI~Cd~~C~~WfH~~Cvgl~~~----~--~~~~~~~C~~C~ 52 (52)
T 2kgg_A 15 KVDWVQCDGGCDEWFHQVCVGVSPE----M--AENEDYICINCA 52 (52)
T ss_dssp TCCEEECTTTTCCEEETTTTTCCHH----H--HHHSCCCCSCC-
T ss_pred CCcEEEeCCCCCccCcccccCCCcc----c--cCCCCEECCCCC
Confidence 56689999 7999999999654321 1 112789999984
No 175
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.55 E-value=4.8 Score=41.58 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=25.7
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCc
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 452 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~ 452 (1138)
.=-++.-.||+|||...+-.+..+... .++++++-|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccc
Confidence 334567999999997666666555433 3678888876
No 176
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=86.47 E-value=0.41 Score=49.83 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCCEEEEcCCcccCC---cccHHHHHHHhcccC----eEEEEecCC
Q 001149 532 GPDILVCDEAHMIKN---TRADTTQALKQVKCQ----RRIALTGSP 570 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN---~~S~~skal~~l~~~----~RllLTGTP 570 (1138)
...+|||||||.+-+ ......+.+..+... .-++|+|.|
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 467899999999832 223233455555333 358888888
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.27 E-value=1.6 Score=48.68 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=20.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...|.+|.-+.|+|||..|-++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999999988877654
No 178
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=86.21 E-value=6.6 Score=39.22 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 385 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 385 phQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
+.|..++..+.+. +.++.. ..+.+.+|.-..|.|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~-~~~~~~----~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVF-VHNFNP----EEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHH-HHSCCG----GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhccc----cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677877766432 222211 2357788889999999988887776654
No 179
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.19 E-value=2.6 Score=48.59 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 461 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E 461 (1138)
....|.+|.-..|.|||+.|=|++... ..+++.|....++..|.-|
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~-------~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT-------DCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH-------TCEEEEEEGGGGSCSSTTH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh-------CCCceEEEhHHhhccccch
Confidence 456899999999999999988887654 2467777777666555433
No 180
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.85 E-value=2.6 Score=47.61 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=22.5
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
..+...+|.-+.|.|||..+-+++..+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567888999999999988877766543
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.49 E-value=4.1 Score=47.54 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=21.8
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
+.+.+|.-+.|+|||..+-++...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999888777666543
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.84 E-value=15 Score=40.87 Aligned_cols=29 Identities=7% Similarity=-0.093 Sum_probs=24.1
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
..+.+.+|.-..|.|||.++-+++..+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56677889999999999999888877654
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.48 E-value=1.7 Score=49.28 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
...|.+|.-+.|.|||..|-+++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45788999999999999988877654
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.78 E-value=2.9 Score=43.51 Aligned_cols=27 Identities=19% Similarity=-0.027 Sum_probs=21.8
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
.+.+.+|.-+.|.|||..+-++...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 457888999999999998877766553
No 185
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=83.17 E-value=1.4 Score=54.01 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCCCCCCceEEEeec--ccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLIST--RAG 869 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~~n~~v~v~LiST--kaG 869 (1138)
.+..+|||..+-..++.+...|.. ..+- ..-+++..+|..++++|. . .+. +|+++ ...
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--------------~~~~-~~q~~~~~~~~~ll~~f~-~-~~~---vL~~v~~gsf 506 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--------------EHMK-EYRGIDQKELYSMLKKFR-R-DHG---TIFAVSGGRL 506 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--------------CCEE-CCTTCCSHHHHHHHHHHT-T-SCC---EEEEETTSCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--------------cchh-ccCCCChhHHHHHHHHhc-c-CCc---EEEEEecCce
Confidence 356788888887777776665541 1111 333344568999999998 3 222 45664 478
Q ss_pred ccCCCccc--CCEEEEEcCCC-CcchHHHHHHH
Q 001149 870 SLGINLHS--ANRVIIVDGSW-NPTYDLQAIYR 899 (1138)
Q Consensus 870 g~GLNLt~--An~VIi~D~~W-NP~~~~QAigR 899 (1138)
++|||+.+ +..|||.-.|+ +|.-..++.-+
T Consensus 507 ~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~ 539 (620)
T 4a15_A 507 SEGINFPGNELEMIILAGLPFPRPDAINRSLFD 539 (620)
T ss_dssp --------CCCCEEEESSCCCCCCCHHHHHHHH
T ss_pred eccccCCCCceEEEEEEcCCCCCCCHHHHHHHH
Confidence 89999995 67888887766 44444444433
No 186
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.77 E-value=3.2 Score=41.11 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=22.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
.+.+.+|.-+.|.|||..+-+++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467899999999999988887766543
No 187
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=82.33 E-value=0.91 Score=42.85 Aligned_cols=40 Identities=25% Similarity=0.703 Sum_probs=27.0
Q ss_pred eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 205 LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 205 l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
|+.|+.|.+.||..|+..... ..+. ....+.|.|+.|.|.
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~-~~~~-~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGE-GLLN-EELPNCWECPKCYQE 114 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCC-CEEC-SSSSSEEECTTTC--
T ss_pred eEEeeecCCeEECCCCCCCcc-cccc-ccCCCCeECCCCcCC
Confidence 889999999999999765422 1111 122345999999876
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=80.69 E-value=4.5 Score=39.99 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
...+.+|.-+.|.|||..+-++...+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356778899999999998888776653
No 189
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.57 E-value=3.3 Score=44.77 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
..+.+.+|.-+.|+|||..|-++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999888776544
No 190
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=79.34 E-value=0.4 Score=40.49 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCCCcccccccCC---CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 189 ADCSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 189 ~d~~~~~C~~C~~---gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
++..+..|.+|.+ .++-+..-.|...||..||...+.. ...|++|.-.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~ 60 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----------NKKCPICRVD 60 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----------CSBCTTTCSB
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----------CCCCcCcCcc
Confidence 3444558999953 3444444469999999998765422 1359999643
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.69 E-value=2.4 Score=45.15 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=20.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...+.+|.-+.|+|||..|-++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999988777654
No 192
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=78.32 E-value=0.3 Score=40.55 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=31.1
Q ss_pred CCCcccccccCCCC--cee-ec--CCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 190 DCSECYCVWCGRSS--DLV-SC--KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 190 d~~~~~C~~C~~gg--~l~-~C--d~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
|.....|+||-+++ +|+ -| ...-+.||..||.+.+... +.+.|++|..
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~--------~~~~C~~C~~ 55 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS--------RNTACQICGV 55 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH--------TCSBCTTTCC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhC--------CCCccCCCCC
Confidence 34455899996432 232 22 2333589999998886432 4689999964
No 193
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=77.98 E-value=3.1 Score=51.93 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=51.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH-H
Q 001149 379 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-N 457 (1138)
Q Consensus 379 l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~-q 457 (1138)
+...|-|.|.++|.. ..+..++-..-|+|||.+.+.-+++++.........+|+|+.++-.. .
T Consensus 8 ~l~~Ln~~Q~~av~~----------------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~E 71 (724)
T 1pjr_A 8 LLAHLNKEQQEAVRT----------------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAARE 71 (724)
T ss_dssp HHTTSCHHHHHHHHC----------------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHH
T ss_pred HHhhCCHHHHHHHhC----------------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHH
Confidence 445688999999862 23556777899999999999988888765433446899999876544 4
Q ss_pred HHHHHHHHC
Q 001149 458 WKQEFMKWR 466 (1138)
Q Consensus 458 W~~E~~kw~ 466 (1138)
-.+.+.+.+
T Consensus 72 m~~Rl~~~l 80 (724)
T 1pjr_A 72 MRERVQSLL 80 (724)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 445555543
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.90 E-value=3.5 Score=45.66 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=25.2
Q ss_pred CCCEEEEcCCcccCCcc--cHHHHHHHhcccCeEEEEecCCCC
Q 001149 532 GPDILVCDEAHMIKNTR--ADTTQALKQVKCQRRIALTGSPLQ 572 (1138)
Q Consensus 532 ~~dlVIlDEaH~iKN~~--S~~skal~~l~~~~RllLTGTPlq 572 (1138)
.+.+||+||+|.+.+.. ..+.+.+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 46789999999984111 122223333345678888877643
No 195
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=77.88 E-value=0.27 Score=57.37 Aligned_cols=40 Identities=18% Similarity=0.519 Sum_probs=29.6
Q ss_pred CCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 202 SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 202 gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+|..|+||.|..=||..|+.....+ ....+.|.|+.|.+.
T Consensus 17 ~~~MIqCD~C~~WfH~~CVgi~~~~-----~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 17 TRFMIECDMCQDWFHGSCVGVEEEK-----AADIDLYHCPNCEVL 56 (447)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHH-----HTTEEECCCHHHHHH
T ss_pred CCCeEEcCCCCcccccccCCcCccc-----ccCCCEEECCCCccc
Confidence 6899999999999999997432111 112368999999654
No 196
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=77.34 E-value=0.98 Score=36.04 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=29.6
Q ss_pred ccccccCCCC----ceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 194 CYCVWCGRSS----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~~gg----~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
..|.+|.+.- .......|...||..||...+.. ...|++|.-
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----------~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----------HSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----------CCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----------CCcCcCCCC
Confidence 4688887542 24555569999999999776532 246999964
No 197
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=76.60 E-value=11 Score=38.21 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=20.1
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
.+.+|.-+.|.|||..+-++...+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999988877766553
No 198
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.52 E-value=5.1 Score=41.41 Aligned_cols=35 Identities=20% Similarity=0.041 Sum_probs=27.4
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEE
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 449 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV 449 (1138)
....++.-..|-|||-.|+++.......+ .+++||
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G----~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG----KNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT----CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEE
Confidence 35677788999999999999887776553 477777
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=76.33 E-value=3.2 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...|.+|.-+.|.|||..|-++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4578899999999999988877654
No 200
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.90 E-value=0.47 Score=40.83 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=30.3
Q ss_pred CcccccccC---CCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 192 SECYCVWCG---RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~---~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.+..|.+|. ..++.+..-.|...||..||...+.. ...|++|.-
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----------~~~CP~Cr~ 68 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----------NRTCPICRA 68 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----------CSSCTTTCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----------CCcCcCcCC
Confidence 445799998 34444444459999999998766421 247999964
No 201
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.59 E-value=1.2 Score=40.32 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=42.2
Q ss_pred cccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeec--CCcc--------hHhHHHHHHHhhhcc
Q 001149 193 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCC--CSPS--------LLKRLTSELGRAMGS 261 (1138)
Q Consensus 193 ~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~--C~~~--------~~~~l~~~~~~~~~~ 261 (1138)
+..|.+|.+--. .+....|..+||..||...+.... ...+...|++ |... |...|...++.....
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~----~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ----KRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH----TTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc----CcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 357999986543 444445999999999977654320 1124688999 8511 455666666666655
Q ss_pred c
Q 001149 262 E 262 (1138)
Q Consensus 262 ~ 262 (1138)
.
T Consensus 83 ~ 83 (94)
T 2yu4_A 83 R 83 (94)
T ss_dssp C
T ss_pred h
Confidence 3
No 202
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.41 E-value=0.69 Score=40.43 Aligned_cols=48 Identities=17% Similarity=0.515 Sum_probs=31.1
Q ss_pred CCCCcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 189 ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 189 ~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+...+..|.+|.+-=.--.--.|...||..||...+.. .-.|++|...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~ 58 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----------TPRCYICDQP 58 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----------CSBCSSSCCB
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----------CCcCCCcCcc
Confidence 34445579999754322112369999999998765421 3479999754
No 203
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=75.03 E-value=1.1 Score=38.80 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=30.4
Q ss_pred CCCcccccccCCC---CceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~g---g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
...+..|.+|.+. +..+.--.|...||..||...+.. ...|++|.-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~ 61 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----------HDSCPVCRKS 61 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----------TCSCTTTCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----------CCcCcCcCCc
Confidence 3445689999543 333222248999999998766432 2479999643
No 204
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.02 E-value=6.1 Score=44.36 Aligned_cols=29 Identities=24% Similarity=0.151 Sum_probs=23.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~ 437 (1138)
..+.+.+|.-+.|.|||..+-+++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678899999999999988777766543
No 205
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.85 E-value=0.84 Score=40.16 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=32.1
Q ss_pred CCCcccccccCCC----Cceee---cCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGRS----SDLVS---CKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~g----g~l~~---Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..+..|+||-+. +.|+. |..+-+.||..||.+.+... +...|++|.-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--------~~~~CplCr~~ 67 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--------DTRCCELCKYE 67 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--------CCSBCSSSCCB
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--------CCCCCCCCCCe
Confidence 4445689999853 34442 12223899999998776432 45789999643
No 206
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=74.57 E-value=0.68 Score=36.94 Aligned_cols=44 Identities=23% Similarity=0.497 Sum_probs=30.6
Q ss_pred CcccccccCCC----CceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 192 SECYCVWCGRS----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~~g----g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.+..|.+|.+. ++.+..-.|...||..||...+.. ...|++|.-
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----------GYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----------TCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----------CCcCCCCCC
Confidence 34579999753 344666679999999998655321 157999964
No 207
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.70 E-value=4.3 Score=46.44 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=26.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 456 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~ 456 (1138)
...+.+|.-+.|.|||..|-++...+ ..+++.|.+..+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~-------~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES-------NATFFNISAASLTS 186 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT-------TCEEEEECSCCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh-------cCcEEEeeHHHhhc
Confidence 45789999999999999887775432 23555555554443
No 208
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.48 E-value=6.3 Score=45.71 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=33.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 459 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~ 459 (1138)
....|.+|.-..|.|||+.|-|++... ..+++.|....++..|.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~-------~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT-------SATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH-------TCEEEEEESGGGCCSSS
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh-------CCCEEEEEHHHhhhccC
Confidence 456899999999999999998887664 24667777666655443
No 209
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=72.57 E-value=0.89 Score=40.84 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=30.2
Q ss_pred CCcccccccCC---CCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 191 CSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 191 ~~~~~C~~C~~---gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+.+..|.+|.+ .|+.+..-.|...||..||...+.. .-.|++|.-
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----------~~~CP~Cr~ 85 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----------SGTCPVCRC 85 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----------TCBCTTTCC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----------CCcCcCcCc
Confidence 44557999963 2443433349999999998766432 127999974
No 210
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.38 E-value=24 Score=39.54 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=18.9
Q ss_pred CeEEEcCCCccHHHHHHHHHHHH
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l 435 (1138)
..+|.-+.|.|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68889999999998887766554
No 211
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.94 E-value=6.5 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...+.+|.-+.|.|||..|-++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999988777543
No 212
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=71.65 E-value=0.93 Score=39.48 Aligned_cols=24 Identities=33% Similarity=1.197 Sum_probs=18.2
Q ss_pred ccccccccccccCCCcccccccccCCCceeecCCcchHhHHHHHHHhhhcc
Q 001149 211 CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGS 261 (1138)
Q Consensus 211 C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~~~~~~~~~~ 261 (1138)
|..|||+.| -|+|.+| .+.|.||.
T Consensus 22 Cn~CYCKkC-----------------cyHCq~C----------Fl~KGLGI 45 (86)
T 3mi9_C 22 CTNCYCKKC-----------------CFHCQVC----------FITKALGI 45 (86)
T ss_dssp CCSCCSTTG-----------------GGSSHHH----------HHHTTSCC
T ss_pred CCCccccch-----------------hhhhhhh----------hcccCCcc
Confidence 778899999 4778777 45566665
No 213
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=71.33 E-value=22 Score=38.75 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.0
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+.+|.-+.|.|||..+-++...+
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 358899999999999888877665
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.43 E-value=4.2 Score=47.37 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=31.8
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
....|.+|.-..|.|||+.|=|++..+ ..+++.|....++..|
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~-------~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI-------GANFIFSPASGIVDKY 255 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-------TCEEEEEEGGGTCCSS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh-------CCCEEEEehhhhcccc
Confidence 456899999999999999998887664 2356666666555444
No 215
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.13 E-value=3.3 Score=33.39 Aligned_cols=42 Identities=21% Similarity=0.499 Sum_probs=27.0
Q ss_pred CcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.+..|.+|.+.=.--.--.|..+||..|+.. ..-.|++|...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------------~~~~CP~Cr~~ 46 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-------------SGMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-------------SSSSCSSCCSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc-------------CCCCCCcCCcE
Confidence 3446888875433222223999999999754 13469999643
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.88 E-value=10 Score=44.27 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
....|.+|.-..|.|||+.|=|++..+ ..+++.|....++..|
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~-------~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT-------DATFIRVIGSELVQKY 283 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH-------TCEEEEEEGGGGCCCS
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc-------CCCeEEEEhHHhhccc
Confidence 467899999999999999988877654 2366666666665544
No 217
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.73 E-value=1.3 Score=38.74 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=22.6
Q ss_pred eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 205 LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 205 l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
++.--.|...||..||...+... =.||+|.-.
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQN----------NRCPLCQQD 73 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTC----------CBCTTTCCB
T ss_pred EEEeCCCCCccChHHHHHHHHhC----------CCCCCcCCC
Confidence 33444699999999998765432 179999743
No 218
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=67.99 E-value=0.89 Score=37.37 Aligned_cols=45 Identities=20% Similarity=0.650 Sum_probs=30.5
Q ss_pred CcccccccCCC-------CceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGRS-------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~g-------g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.+..|.+|.+. +..+..-.|...||..|+...+.. .-.|++|...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~ 53 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRKK 53 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----------CSBCTTTCCB
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----------CCCCCCCCcc
Confidence 34578888763 344455679999999998655421 2379999654
No 219
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.46 E-value=1.9 Score=36.53 Aligned_cols=44 Identities=30% Similarity=0.541 Sum_probs=29.7
Q ss_pred CcccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.+..|.+|.+.-. .+.- .|...||..||...+.. .-.|++|.-.
T Consensus 14 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL----------GKRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC----------SSBCSSSCCB
T ss_pred CCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC----------CCcCcCcCch
Confidence 3457888875432 2222 59999999998766532 2579999755
No 220
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=66.58 E-value=21 Score=39.36 Aligned_cols=23 Identities=4% Similarity=-0.119 Sum_probs=19.3
Q ss_pred CcCeEEEcCCCccHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLY 433 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~ 433 (1138)
....++.-+.|.|||-.+.+++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56788999999999988877764
No 221
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=66.33 E-value=15 Score=43.23 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=58.8
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc-hHHHHHHHHHHHCCCCCCCeEEEEecCc--------
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKWRPSELKPLRVFMLEDV-------- 481 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s-ll~qW~~E~~kw~p~~~~~l~V~~~~~~-------- 481 (1138)
+....|.--.|.|||+.+.+++... .+|+|||+|.. ...+|.+++..|+|.. |+.+...
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~-------~~p~lvv~~~~~~A~~l~~~l~~~~~~~-----v~~fp~~e~lpyd~~ 81 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERH-------AGPVVLIAPDMQNALRLHDEISQFTDQM-----VMNLADWETLPYDSF 81 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHS-------SSCEEEEESSHHHHHHHHHHHHHTCSSC-----EEECCCCCSCTTCSS
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHh-------CCCEEEEeCCHHHHHHHHHHHHhhCCCc-----EEEEeCccccccccc
Confidence 3456788899999999876665331 46899999975 5669999999998752 4443321
Q ss_pred --c---hhHHHHHHHHHhh-cCCEEEEccchhhc
Q 001149 482 --S---RDRRAELLAKWRA-KGGVFLIGYTAFRN 509 (1138)
Q Consensus 482 --~---~~~r~~~l~~~~~-~~~VvIity~~~r~ 509 (1138)
. ...|...+..+.. ..+|+|++...+..
T Consensus 82 ~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp CCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred CCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 1 1345556655543 34688888777643
No 222
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.01 E-value=3.2 Score=45.66 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.0
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
..+.|.+|.-+.|.|||..|-++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 35678899999999999988776644
No 223
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.69 E-value=23 Score=36.03 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=19.0
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
...+|.-+.|.|||..+-+++..+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999998877776554
No 224
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=65.68 E-value=72 Score=32.85 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=34.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
.|.-.+|+-..|.|||.-++.++...... ..+++++.-.....+....+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccCCHHHHHHHHH
Confidence 34456788999999999888887776543 247788776544445444443
No 225
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=65.44 E-value=7.4 Score=45.43 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 456 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~ 456 (1138)
...|.+|.-+.|.|||..|-++...+ ...+++.|....++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSDLVS 206 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHHHHh
Confidence 45788999999999999887776543 123455555544443
No 226
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=65.36 E-value=2.1 Score=39.03 Aligned_cols=43 Identities=30% Similarity=0.716 Sum_probs=29.9
Q ss_pred cccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.|.+|.+.= +.+.|-.|...||..||...+... .-.|++|...
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---------~~~CP~Cr~~ 67 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---------RAQCPHCRAP 67 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---------CSBCTTTCCB
T ss_pred CCccCCccccCccccCCCCChhhHHHHHHHHHHC---------cCCCCCCCCc
Confidence 577776433 456668899999999987654322 2579999643
No 227
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=65.25 E-value=21 Score=38.21 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=21.1
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
....+.+|.-+.|+|||..|-++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567888999999999988877654
No 228
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.50 E-value=2 Score=37.31 Aligned_cols=49 Identities=24% Similarity=0.478 Sum_probs=30.8
Q ss_pred cccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+.-. .+.. .|...||..|+...+.... ...+...|++|...
T Consensus 19 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNR----NTDGKGNCPVCRVP 68 (85)
T ss_dssp TTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSB----CTTSCBCCTTTCCC
T ss_pred CCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhcc----CCCCCCCCCCCCCc
Confidence 346888875432 2222 4999999999876543321 12346889999653
No 229
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.23 E-value=22 Score=39.28 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.5
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
.+.+|.-+.|.|||..+-++...+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999998888776654
No 230
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=62.80 E-value=1.3 Score=36.99 Aligned_cols=44 Identities=23% Similarity=0.467 Sum_probs=30.5
Q ss_pred cccccccCCCCce-eecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRSSDL-VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~gg~l-~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+.-.- ...-.|...||..|+...+.. .-.|++|...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~ 49 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----------NPTCPLCKVP 49 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----------SCSTTTTCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----------cCcCcCCChh
Confidence 3479999876533 344569999999998765421 1379999643
No 231
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.46 E-value=18 Score=39.26 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.9
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHH
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
..+|.-+.|.|||..+-++...+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999988888776653
No 232
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=62.26 E-value=1.5 Score=41.80 Aligned_cols=66 Identities=18% Similarity=0.520 Sum_probs=44.1
Q ss_pred ccCcccHhhHhhcCcccC-CCCCcccccccCCC-------CceeecCCccccccccccccCCCcccccccccCCCceeec
Q 001149 171 IVCKDCKCLLEKKMHVKD-ADCSECYCVWCGRS-------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCC 242 (1138)
Q Consensus 171 ~~C~~C~~~~~~~~~~~d-~d~~~~~C~~C~~g-------g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~ 242 (1138)
..|+.|...+....+..- -+.....|.+|.+. +.....-.|..+||..||.+.+.. ...|++
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~ 118 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPT 118 (133)
T ss_dssp SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----------CSBCTT
T ss_pred CCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----------CCCCCC
Confidence 378888887776654221 13344579999763 344456679999999998765422 247999
Q ss_pred CCcc
Q 001149 243 CSPS 246 (1138)
Q Consensus 243 C~~~ 246 (1138)
|.-.
T Consensus 119 Cr~~ 122 (133)
T 4ap4_A 119 CRKK 122 (133)
T ss_dssp TCCB
T ss_pred CCCc
Confidence 9754
No 233
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.18 E-value=5.7 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.3
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLY 433 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~ 433 (1138)
....|.+|.-+.|+|||..|-++..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHH
Confidence 3557899999999999998877643
No 234
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.67 E-value=4.4 Score=37.98 Aligned_cols=39 Identities=28% Similarity=0.677 Sum_probs=25.8
Q ss_pred cccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.|.+|.+.-. .+.-..|..+||..||...+. -.|++|..
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------------~~CP~Cr~ 63 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------------TGCPVCYT 63 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------------TBCSSSCC
T ss_pred CCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------------CCCcCCCC
Confidence 4666654432 222226899999999876654 36999964
No 235
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=60.66 E-value=18 Score=42.54 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...|.+|.-+.|+|||..+=++...
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999887776543
No 236
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=60.03 E-value=3 Score=38.86 Aligned_cols=42 Identities=19% Similarity=0.524 Sum_probs=27.2
Q ss_pred cccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.|.+|.+-=. .+.- .|..+||..||...+.. +...|++|.-.
T Consensus 17 ~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~ 59 (115)
T 3l11_A 17 QCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK---------ASLCCPFCRRR 59 (115)
T ss_dssp BCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT---------TTSBCTTTCCB
T ss_pred CCccCCcccCceeEc-CCCCHHhHHHHHHHHhH---------CcCCCCCCCcc
Confidence 4666653221 1111 59999999999877643 24679999754
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=59.74 E-value=24 Score=41.00 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=25.1
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
.-.+++-..|.|||.++..++..+... .+++++|+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~----G~kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR----GYKVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC----CCeEEEEe
Confidence 345667789999999998888776543 24566665
No 238
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.63 E-value=3.7 Score=34.62 Aligned_cols=46 Identities=24% Similarity=0.553 Sum_probs=29.9
Q ss_pred cccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+.-. .+.. .|...||..||...+.. ....-.|++|...
T Consensus 20 ~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-------~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-------SCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-------SCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-------CCCCCCCCCCCCc
Confidence 346888875432 2222 79999999998766531 1234579999643
No 239
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=59.45 E-value=13 Score=40.18 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
.+.+.+|.-+.|.|||..|-++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4578899999999999888776543
No 240
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=59.41 E-value=2.1 Score=36.85 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=29.6
Q ss_pred cccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 193 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 193 ~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+..|.+|.+--. .+.. .|..+||..||...+.. +.-.|++|..
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~---------~~~~CP~C~~ 51 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA---------GHKTCPKSQE 51 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT---------TCCBCTTTCC
T ss_pred cCCCCCccccccCCEEc-CCCCeecHHHHHHHHHH---------CcCCCCCCcC
Confidence 457888876543 2222 59999999998766532 3567999964
No 241
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.97 E-value=22 Score=39.64 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
..+...+|.-..|.|||..+-+++..+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999988877766543
No 242
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=58.83 E-value=73 Score=36.79 Aligned_cols=50 Identities=16% Similarity=-0.018 Sum_probs=34.4
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 462 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~ 462 (1138)
.|.=.+|+-..|.|||.-++.++....... ..+++++..-.-..++...+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE---GVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CCCEEEEESSSCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHH
Confidence 455678999999999998888887665421 35888887644444444443
No 243
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.63 E-value=2.6 Score=35.37 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=29.7
Q ss_pred CcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.+..|.+|.+.-.- .--.|...||..|+...+. ....|++|.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~----------~~~~CP~Cr 55 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD----------RHRNCPICR 55 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC----------CCSSCHHHH
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH----------CcCcCCCcC
Confidence 34579999876443 2335999999999876654 245799994
No 244
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=58.49 E-value=24 Score=44.25 Aligned_cols=104 Identities=14% Similarity=-0.018 Sum_probs=72.3
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...|||-.+..-.+......|.+++|.+.....+.-+.+.+.... ...|+.+..++|+++..+|...+..+.
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~--------~~~gi~v~~l~G~~~~~~r~~~~~~l~ 468 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESF--------SKFNIHVALLIGATTPSEKEKIKSGLR 468 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHH--------TCSSCCEEECCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--------hhcCceEEEEeCCCCHHHHHHHHHHHh
Confidence 467999877665555444568899999998876666655555421 013789999999999999999999987
Q ss_pred CCCCCCceEEEeeccccccCCCcccCCEEEEEcCC
Q 001149 853 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 887 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~GLNLt~An~VIi~D~~ 887 (1138)
+ +.+.|++.+.......+++.....||+=+.+
T Consensus 469 ~---g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 469 N---GQIDVVIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp S---SCCCEEEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred c---CCCCEEEECHHHHhhhhhccCCceEEecccc
Confidence 5 3455555555545556677777766664443
No 245
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.06 E-value=1.8 Score=36.09 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=27.8
Q ss_pred ccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+.-.--.--.|..+||..||...+. ...-.|++|...
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS---------SSSPKCTACQES 59 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHT---------TSSCCCTTTCCC
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHH---------hCcCCCCCCCcC
Confidence 35777764322111136999999999876643 234579999754
No 246
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=57.92 E-value=2.4 Score=36.26 Aligned_cols=45 Identities=24% Similarity=0.652 Sum_probs=29.3
Q ss_pred cccccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 193 ECYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 193 ~~~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+..|.+|.+.= +.+.-..|...||..||...+.. .+.-.|++|..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--------~~~~~CP~Cr~ 60 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE--------SDEHTCPTCHQ 60 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH--------SSSSCCSSSCC
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh--------cCCCcCCCCCC
Confidence 34677776533 23333449999999998765432 13457999975
No 247
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=57.83 E-value=3.7 Score=44.15 Aligned_cols=44 Identities=14% Similarity=0.321 Sum_probs=32.4
Q ss_pred ccccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeec--CCc
Q 001149 194 CYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCC--CSP 245 (1138)
Q Consensus 194 ~~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~--C~~ 245 (1138)
..|.+|.+-= +.+..-.|+.+||..||...+.. .+.|.||+ |..
T Consensus 182 l~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~--------~~~~~CPvtGCr~ 228 (267)
T 3htk_C 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG--------YTTRDCPQAACSQ 228 (267)
T ss_dssp SBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT--------CSCEECSGGGCSC
T ss_pred eECcCccCcccCCeeeCCCCCcccHHHHHHHHHh--------CCCCCCCcccccC
Confidence 4599998654 45544579999999999766542 25799999 964
No 248
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=57.83 E-value=2.3 Score=39.60 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=21.6
Q ss_pred cCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 208 CKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 208 Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.-.|...||..||...+... .....-.|++|.-
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~-----~~~~~~~CP~CR~ 90 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNG-----NKDGSLQCPSCKT 90 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHT-----CCSSCCBCTTTCC
T ss_pred cCCCCCcccHHHHHHHHHcc-----cCCCCCcCCCCCC
Confidence 44589999999998665211 0123457999964
No 249
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=57.74 E-value=58 Score=37.80 Aligned_cols=48 Identities=13% Similarity=0.008 Sum_probs=33.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
.|.-.+|+-..|.|||.-++.++....... ..+++++..---..++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~E~s~~~l~~ 249 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLEMSAQQLVM 249 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEECCCCHHHHHH
Confidence 456689999999999988888877665431 247888875433334333
No 250
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=57.07 E-value=5.1 Score=40.48 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=31.5
Q ss_pred ccCCCCc----eeecCCccccccccccccCCCcccccccccCCCceeecCCcch
Q 001149 198 WCGRSSD----LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 198 ~C~~gg~----l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~~ 247 (1138)
-||+.|+ .+-|+.|-+-||..|+..+.|+- ++ ...-=...|-.|.+.+
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~-lp-~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSC-LP-FMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTC-CT-TCCSEEEECTTTSTTS
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCc-cc-cceeEEEEccccCCCC
Confidence 4677665 56788899999999998665543 11 0112235599998876
No 251
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.05 E-value=2.7 Score=36.45 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=28.9
Q ss_pred ccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+.-. .+.. .|...||..|+...+... ....+.-.|++|...
T Consensus 20 ~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~----~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 20 VTCPICLELLTQPLSL-DCGHSFCQACLTANHKKS----MLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHH----HHTTSCCCCTTTCCS
T ss_pred CCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHh----hcCCCCCcCCCCCCc
Confidence 35777765422 1222 599999999987654331 112345679999643
No 252
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.32 E-value=2.5 Score=39.05 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=26.5
Q ss_pred cccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.|.+|.+.=.--.--.|...||..||...+... .+...|++|..
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~ 66 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK-------KGPSQCPLCKN 66 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS-------SSSCCCTTTSC
T ss_pred CCcccChhhcCeEECCCCCHHHHHHHHHHHHhC-------CCCCCCcCCCC
Confidence 466665432111112599999999987554321 24578999964
No 253
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=56.12 E-value=2 Score=42.99 Aligned_cols=43 Identities=21% Similarity=0.583 Sum_probs=27.4
Q ss_pred cccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.|.+|.+.- +.+.+-.|...||..||...+. .+.-.|++|...
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~ 99 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALR---------SGNKECPTCRKK 99 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH---------TTCCBCTTTCCB
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHH---------hCcCCCCCCCCc
Confidence 455554332 2344457999999999876543 235679999743
No 254
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.05 E-value=2.4 Score=35.26 Aligned_cols=43 Identities=21% Similarity=0.685 Sum_probs=28.8
Q ss_pred cccccccCCC-------CceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 193 ECYCVWCGRS-------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 193 ~~~C~~C~~g-------g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+..|.+|.+. +..+.--.|...||..||...+.. .-.|++|.-
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 64 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRK 64 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----------CSSCTTTCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----------CCCCCCCCC
Confidence 3467777653 344455679999999998765421 236999964
No 255
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=55.96 E-value=3.3 Score=39.60 Aligned_cols=41 Identities=17% Similarity=0.552 Sum_probs=28.9
Q ss_pred eeecCCccccccccccccCCCccc---ccccccCCCceeecCCcch
Q 001149 205 LVSCKSCKTLFCTTCVKRNISEAC---LSDEVQASCWQCCCCSPSL 247 (1138)
Q Consensus 205 l~~Cd~C~~~f~~~C~~~~~~~~~---~~~~~~~~~W~C~~C~~~~ 247 (1138)
.|.||.|..=||..|+... ... ++.+.+...|.|+.|.+.+
T Consensus 2 mi~c~~c~~w~H~~c~~~~--~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLS--DEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCC--HHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCCccCCcccccC--HHHHHHHhhccccceeeCccccccc
Confidence 5899999999999996532 211 2223345679999998754
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=55.09 E-value=12 Score=47.05 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
....|.+|.-..|.|||+.|-|++... ..+++.|-...++..|
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~-------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC-------QANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT-------TCEEEECCHHHHHTTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh-------CCceEEeccchhhccc
Confidence 356799999999999998887766442 2244444444444433
No 257
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.97 E-value=41 Score=41.81 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+.+.+|.-+.|.|||..+-++...+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 56788999999999999888777654
No 258
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=54.71 E-value=31 Score=40.03 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=23.9
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
.-.+++-..|.|||-++..++..+... .+++++|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~----G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR----GYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 345556789999999888877766443 24566655
No 259
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=54.65 E-value=2.6 Score=40.82 Aligned_cols=41 Identities=20% Similarity=0.542 Sum_probs=25.8
Q ss_pred cccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.|.+|.+.-.-..--.|..+||..||...+.. .-.||+|.-
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 95 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----------KIECPICRK 95 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----------CSBCTTTCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHc----------CCcCCCCCC
Confidence 57777654321111248999999998765432 235999964
No 260
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=54.42 E-value=30 Score=38.42 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=19.6
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
...+|.-+.|.|||..+-++...+
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999888776655
No 261
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.97 E-value=3.1 Score=36.52 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=29.5
Q ss_pred cccccccCCCCc-----eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRSSD-----LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~gg~-----l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
...|.+|.+.-. .+.- .|...||..|+...+... ...-.|++|.-.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS-------INGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC-------SSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC-------CCCcCCCCCCCc
Confidence 346777765422 2222 599999999987654321 235789999643
No 262
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=53.68 E-value=70 Score=34.92 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=19.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLY 433 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~ 433 (1138)
...+.+|.-+.|+|||..|-++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHH
Confidence 457899999999999987766543
No 263
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.47 E-value=5.6 Score=31.75 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=26.3
Q ss_pred cccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecC
Q 001149 193 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 193 ~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
+..|.+|.+.=.--.--.|...||..||...+... ...-.|++|
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL-------ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS-------CCSCCCSCC
T ss_pred CCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc-------CCCCCCCCC
Confidence 34677776432211112599999999997664321 134568887
No 264
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=53.47 E-value=26 Score=34.09 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=20.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+...+|.-..|.|||..+-++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678888999999998777766554
No 265
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.41 E-value=2.5 Score=35.96 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCcccccccCCC---C-ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 191 CSECYCVWCGRS---S-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 191 ~~~~~C~~C~~g---g-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..+..|.+|.+. + .+... .|...||..||...+... -.|++|.-.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~----------~~CP~Cr~~ 61 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVR----------KVCPLCNMP 61 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHC----------SBCTTTCCB
T ss_pred CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcC----------CcCCCcCcc
Confidence 334578888754 2 22222 489999999987654211 279999643
No 266
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=53.26 E-value=2.6 Score=35.33 Aligned_cols=44 Identities=23% Similarity=0.685 Sum_probs=30.1
Q ss_pred cccccccCCC-------CceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRS-------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~g-------g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+. ++.+..-.|...||..||...+... =.|++|.-.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----------~~CP~Cr~~ 60 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----------NTCPTCRKK 60 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----------SBCTTTCCB
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----------CCCCCCCCc
Confidence 3468888643 4555666799999999987654221 279999643
No 267
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=53.06 E-value=3 Score=37.77 Aligned_cols=41 Identities=22% Similarity=0.475 Sum_probs=27.7
Q ss_pred cccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 195 YCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 195 ~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.|.+|.+.- +.+..-.|...||..||...+.. .-.|++|..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~ 65 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----------KTQCPTCCV 65 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----------CCBCTTTCC
T ss_pred CcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----------CCCCCCCCC
Confidence 577776543 33344469999999998765432 237999964
No 268
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=51.51 E-value=6.8 Score=34.05 Aligned_cols=45 Identities=20% Similarity=0.534 Sum_probs=30.0
Q ss_pred CcccccccCCCCce-----eecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGRSSDL-----VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l-----~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.+..|.+|-+.=.+ +-| .|...||..|+..... .+...|+.|.-.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~---------~~~~~CP~CR~~ 59 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT---------DENGLCPACRKP 59 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT---------SSCSBCTTTCCB
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh---------cCCCCCCCCCCc
Confidence 34579999883321 112 3999999999865532 245789999754
No 269
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=51.42 E-value=3.9 Score=35.66 Aligned_cols=17 Identities=0% Similarity=0.030 Sum_probs=14.5
Q ss_pred ccccccccccccCCCcccccccccCCCceeecCC
Q 001149 211 CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 211 C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
|.+|||+.| .|+|.+|-
T Consensus 22 C~~CyCKkC-----------------c~HCq~CF 38 (86)
T 1tac_A 22 SNRAHAKKS-----------------AYHSQVAF 38 (86)
T ss_dssp SSCSSTTTT-----------------TTTCCCSC
T ss_pred CCCceecch-----------------hhhhhHHH
Confidence 778899999 68999993
No 270
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=51.35 E-value=6 Score=33.85 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=29.7
Q ss_pred ccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+.=. .+.. .|..+||..||...+..... .....-.|++|...
T Consensus 13 ~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~---~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 13 VTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVT---SMGGKSSCPVCGIS 62 (79)
T ss_dssp CEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSS---SCCCCCCCSSSCCC
T ss_pred CCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhccc---CCCCCCcCCCCCCc
Confidence 35777753221 1111 59999999999877654311 11245679999743
No 271
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=51.34 E-value=4.8 Score=43.46 Aligned_cols=61 Identities=0% Similarity=-0.172 Sum_probs=38.2
Q ss_pred CcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc-------hHhHHHHHHHhhhcc
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS-------LLKRLTSELGRAMGS 261 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~-------~~~~l~~~~~~~~~~ 261 (1138)
.+..|.+|.+--.--..-.|..+||..||.+.+..+ .-.||+|... |...|...++..+..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---------~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---------GHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---------CSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---------CCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 455799998765433334499999999987665321 2349999632 334455555555543
No 272
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.13 E-value=3.8 Score=33.59 Aligned_cols=43 Identities=23% Similarity=0.573 Sum_probs=26.7
Q ss_pred cccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecC
Q 001149 193 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 243 (1138)
Q Consensus 193 ~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C 243 (1138)
+..|.+|.+.=. .+.- .|...||..||...+.. ....-.|++|
T Consensus 20 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-------~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-------SCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH-------CSSCCCCSCC
T ss_pred CCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc-------CCCCCcCcCC
Confidence 346777764322 2222 69999999998765431 1234568887
No 273
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=51.11 E-value=6 Score=39.16 Aligned_cols=45 Identities=22% Similarity=0.662 Sum_probs=32.2
Q ss_pred cccccccCCC-----CceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~g-----g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|..|+.. +.=..|-.|.+.+|..|-.- ......|.|-+|.-.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---------~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---------HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---------CSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---------cCCCCcEeeHHHHHH
Confidence 4577777765 34467888999999999421 234577999999643
No 274
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=51.00 E-value=51 Score=37.06 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.6
Q ss_pred CcCeEE--EcCCCccHHHHHHHHHHHHH
Q 001149 411 GLGCIL--AHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 411 ~~GgIL--ADeMGLGKTlqaIa~i~~l~ 436 (1138)
+...+| .-..|.|||..+-.++..+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 345667 78999999988877776543
No 275
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=50.56 E-value=33 Score=38.89 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=34.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 459 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~ 459 (1138)
.+.-.+|+-..|.|||.-++.++...... .+++++|.......+|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECCCChhHHH
Confidence 34567889999999999999888776543 24788888766555553
No 276
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=50.18 E-value=19 Score=41.94 Aligned_cols=24 Identities=25% Similarity=0.020 Sum_probs=19.0
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
..+.||.-+.|+|||..|-++...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999877665543
No 277
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=49.91 E-value=2.7 Score=39.86 Aligned_cols=27 Identities=26% Similarity=0.791 Sum_probs=19.9
Q ss_pred CccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 210 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 210 ~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.|...||..||...+. ...-.|++|..
T Consensus 69 ~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~ 95 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFR---------AQVFSCPACRY 95 (124)
T ss_dssp TTSCEEEHHHHHHHHH---------TTCCBCTTTCC
T ss_pred eCCCcccHHHHHHHHh---------HCcCCCCCCCc
Confidence 6999999999865542 23457999964
No 278
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.31 E-value=8.2 Score=44.91 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=34.1
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
....|.+|.-..|.|||+.|=|++... ..+++.|....++..|..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~-------~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT-------NATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-------TCEEEEEEGGGGCSSCSS
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh-------CCCEEEEehhhhhhcccc
Confidence 356899999999999999988877664 246777777777665533
No 279
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.03 E-value=6 Score=34.15 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=22.0
Q ss_pred ecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 207 SCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 207 ~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
-|..|...||..||.+.+... ..=.|++|..
T Consensus 30 ~C~~C~h~fH~~Ci~kWl~~~--------~~~~CP~Cr~ 60 (74)
T 2ct0_A 30 SCETCGIRMHLPCVAKYFQSN--------AEPRCPHCND 60 (74)
T ss_dssp ECSSSCCEECHHHHHHHSTTC--------SSCCCTTTCS
T ss_pred ccCCCCchhhHHHHHHHHHhc--------CCCCCCCCcC
Confidence 466899999999998776422 1125999963
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=48.14 E-value=2.6e+02 Score=30.40 Aligned_cols=49 Identities=8% Similarity=-0.076 Sum_probs=33.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 462 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~ 462 (1138)
.|.=.+|+-..|.|||.-++.++......+ .++|++.----..+....+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g----~~vl~~slE~s~~~l~~R~ 115 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHSLEMGKKENIKRL 115 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT----CEEEEEESSSCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEECCCCHHHHHHHH
Confidence 456689999999999988888776654432 5889988544334433333
No 281
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=47.82 E-value=8.9 Score=33.93 Aligned_cols=46 Identities=22% Similarity=0.631 Sum_probs=29.1
Q ss_pred cccccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+-= +.+.-..|..+||..||...+. ..+.-.|++|...
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~--------~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL--------ESDEHTCPTCHQN 59 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH--------HCTTCCCTTTCCS
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH--------hcCCCcCcCCCCc
Confidence 34688886432 2333344999999999865532 1234689999643
No 282
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=47.68 E-value=3.1 Score=41.10 Aligned_cols=27 Identities=22% Similarity=0.758 Sum_probs=19.7
Q ss_pred CccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 210 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 210 ~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.|..+||..||...+.. ..-.|++|..
T Consensus 95 ~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~ 121 (150)
T 1z6u_A 95 ECFHNVCKDCLQRSFKA---------QVFSCPACRH 121 (150)
T ss_dssp TTSCEEEHHHHHHHHHT---------TCCBCTTTCC
T ss_pred CCCCchhHHHHHHHHHh---------CCCcCCCCCc
Confidence 58999999998655432 3457999964
No 283
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=47.40 E-value=4.5 Score=37.45 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred eecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 206 VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 206 ~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+.--.|...||..||...+.. .=.||+|.-.
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~----------~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKT----------RQVCPLDNRE 98 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTT----------CSBCSSSCSB
T ss_pred EeecccCcEECHHHHHHHHHc----------CCcCcCCCCc
Confidence 333469999999998766432 1359999754
No 284
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=47.24 E-value=38 Score=38.06 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=31.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
.+.-.+|+-+.|.|||..++.++...... .+++++|.-.....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECCCCcCHH
Confidence 34557888999999999988888776543 2467777755444443
No 285
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=46.29 E-value=3.8 Score=46.76 Aligned_cols=44 Identities=23% Similarity=0.529 Sum_probs=31.7
Q ss_pred ccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+.-.-...-.|...||..|+...+.. ..=.||+|...
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~---------~~~~CP~CR~~ 376 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQES---------EGQGCPFCRCE 376 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH---------TCSBCTTTCCB
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc---------CCCCCCCCCCc
Confidence 489999877666666679999999998544321 23469999753
No 286
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=46.15 E-value=1.2e+02 Score=33.73 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 460 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~ 460 (1138)
+|.=.|||...|.|||.-++.++...... ..+++++..---..+...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~----g~~Vl~fSlEms~~ql~~ 91 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND----DRGVAVFSLEMSAEQLAL 91 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT----TCEEEEEESSSCHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCCHHHHHH
Confidence 45568999999999999888887776542 358899886443344333
No 287
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=45.88 E-value=29 Score=38.25 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=21.6
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
..+.-..|.|||..+..++..+... .++++++.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~----g~kV~lv~ 139 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDE----GKSVVLAA 139 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhc----CCEEEEEc
Confidence 3355679999998877766555332 24666665
No 288
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.84 E-value=3.7 Score=33.93 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=27.7
Q ss_pred ccccccCC----CCce-eecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGR----SSDL-VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~----gg~l-~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+ .... ..=-.|..+||..||...+. .+.-.|++|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~ 52 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV---------RGAGNCPECGTP 52 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH---------TTSSSCTTTCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH---------cCCCcCCCCCCc
Confidence 46888877 2221 11136999999999865532 124579999643
No 289
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=45.82 E-value=6.7 Score=43.73 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=23.6
Q ss_pred cccccccCC----CCce--eecC--CccccccccccccCC
Q 001149 193 ECYCVWCGR----SSDL--VSCK--SCKTLFCTTCVKRNI 224 (1138)
Q Consensus 193 ~~~C~~C~~----gg~l--~~Cd--~C~~~f~~~C~~~~~ 224 (1138)
...|.+|-. +|++ ..|+ .|.+.||..||...+
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWL 347 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWF 347 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHH
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHH
Confidence 447999963 3444 4788 499999999987554
No 290
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.53 E-value=55 Score=38.69 Aligned_cols=25 Identities=20% Similarity=0.083 Sum_probs=20.1
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
..+.+|.-+.|.|||..|-++...+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678889999999998887776543
No 291
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=44.81 E-value=1.3e+02 Score=30.31 Aligned_cols=44 Identities=16% Similarity=-0.010 Sum_probs=28.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc--hHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN--VLHNWKQ 460 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s--ll~qW~~ 460 (1138)
.|.-.+|+-..|.|||.-+..++. .. ..+++++.-.. -..+|..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~----~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS----GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH----CSEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc----CCcEEEEECCCCCCHHHHHH
Confidence 445578889999999988777765 21 24677766433 3344443
No 292
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=44.53 E-value=6.4 Score=33.85 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=30.1
Q ss_pred CceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCC
Q 001149 148 EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADC 191 (1138)
Q Consensus 148 ~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~ 191 (1138)
-.+.| +||....---..+-+.+-+|..|..||.-..-..|..|
T Consensus 12 v~~~~-s~g~~f~t~ST~~~i~vdi~s~~HPFyTGkqk~vdt~G 54 (73)
T 1nkw_Y 12 CKIIY-QGQVVMETMSTRPEIHVDVWSGVHPFWTGEERFLDTEG 54 (73)
T ss_pred EEEEE-CCCCEEEEcccCCCEEEEECCCCCcCCcCcEEEEeccc
Confidence 45889 89987443223455889999999999976655555544
No 293
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=44.07 E-value=5.6 Score=37.57 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 209 KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 209 d~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
-.|...||..||...+... =.||+|.-.
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----------~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----------QVCPLDNRE 109 (117)
T ss_dssp --------------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----------CcCCCCCCe
Confidence 4699999999987765432 259999653
No 294
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.70 E-value=11 Score=43.87 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 458 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW 458 (1138)
....|.+|.-..|.|||+.|=|++..+ ..+++.|....++..|
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~-------~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST-------KAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH-------TCEEEEEEGGGTCCSS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-------CCCeEEEecchhhccc
Confidence 456889999999999999998877654 2466666666665544
No 295
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.26 E-value=5.8 Score=33.50 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=29.9
Q ss_pred cccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+.=. .+.-..|...||..||...+.. .-.|++|...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~ 59 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----------SNRCPKCNIV 59 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----------CSSCTTTCCC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----------CCcCCCcCcc
Confidence 447888876543 4444579999999998655421 2469999643
No 296
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=43.17 E-value=76 Score=33.47 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=25.5
Q ss_pred EcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe--CcchHHHHH
Q 001149 417 AHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT--PVNVLHNWK 459 (1138)
Q Consensus 417 ADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~--P~sll~qW~ 459 (1138)
.--=|.|||..++.+...+. . .+++|+|= |..-...|.
T Consensus 34 s~kGGvGKTT~a~~LA~~la-~----g~~VlliD~D~~~~~~~~~ 73 (267)
T 3k9g_A 34 SIKGGVGKSTSAIILATLLS-K----NNKVLLIDMDTQASITSYF 73 (267)
T ss_dssp CSSSSSCHHHHHHHHHHHHT-T----TSCEEEEEECTTCHHHHHT
T ss_pred eCCCCchHHHHHHHHHHHHH-C----CCCEEEEECCCCCCHHHHh
Confidence 45668999999999887775 3 25777774 544444443
No 297
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=42.88 E-value=4 Score=38.10 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=26.0
Q ss_pred eeeccCCCcccccccccccccccCcccHhhH
Q 001149 150 FYCTACNNVAIEVHPHPILNVIVCKDCKCLL 180 (1138)
Q Consensus 150 ~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~ 180 (1138)
-.|.-||+...+-..+-.|++.+|..|+..+
T Consensus 6 ~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 6 VICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp EECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 5699999886666577888999999999876
No 298
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=42.86 E-value=7.9 Score=44.89 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=25.7
Q ss_pred ceeeccCCCcccccccccccccccCcccHhhHhhcC
Q 001149 149 KFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKM 184 (1138)
Q Consensus 149 ~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~ 184 (1138)
...|..||...... +++|..|..|+.||....
T Consensus 50 ~~~C~vC~~~~~g~----hygv~~C~~C~~FFrR~~ 81 (419)
T 3dzy_D 50 AIECRVCGDKASGF----HYGVHACEGCKGFFRRTI 81 (419)
T ss_dssp CCCCSSSCSCCCSB----CSSSBCCHHHHHHHHHHH
T ss_pred CCcCeECCCcCCCC----ccCcccchhhhHHHccch
Confidence 35699999865543 499999999999998764
No 299
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=42.75 E-value=7.7 Score=33.10 Aligned_cols=39 Identities=21% Similarity=0.467 Sum_probs=26.8
Q ss_pred ccccccCCCCceeecCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+.-.-..--.|... ||..|+... ..|++|...
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------------~~CP~Cr~~ 64 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------------DKCPMCYTV 64 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------------SBCTTTCCB
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------------ccCCCcCcC
Confidence 368888765433222358888 999997543 679999754
No 300
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=42.69 E-value=8.1 Score=34.44 Aligned_cols=28 Identities=29% Similarity=0.746 Sum_probs=22.8
Q ss_pred ccccccCC--CCceeecCC--ccccccccccc
Q 001149 194 CYCVWCGR--SSDLVSCKS--CKTLFCTTCVK 221 (1138)
Q Consensus 194 ~~C~~C~~--gg~l~~Cd~--C~~~f~~~C~~ 221 (1138)
.-|.+|.. .|--|-|.. |.+.||+.|-.
T Consensus 18 l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence 46999974 388888876 99999999954
No 301
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=41.55 E-value=79 Score=31.56 Aligned_cols=38 Identities=34% Similarity=0.391 Sum_probs=26.6
Q ss_pred cCCCccHHHHHHHHHHHHHHhcccCCCceEEEe--CcchHHHHH
Q 001149 418 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT--PVNVLHNWK 459 (1138)
Q Consensus 418 DeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~--P~sll~qW~ 459 (1138)
---|.|||..++.+...+.+.+ +++|+|- |..-+..|.
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g----~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG----YNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCC----CeEEEEECCCCCCHHHHH
Confidence 3458999999999888876542 4677776 555555554
No 302
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=41.46 E-value=2.9e+02 Score=31.75 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=31.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 453 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s 453 (1138)
+|.=.|||-..|.|||.-++-++...... ..++|++.---
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEECCC
Confidence 45668999999999999988888776554 25889887543
No 303
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=40.96 E-value=5 Score=36.91 Aligned_cols=43 Identities=30% Similarity=0.672 Sum_probs=28.6
Q ss_pred ccccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+-= +.+....|..+||..||...+.. .-.|++|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~ 59 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----------SKYCPICDVQ 59 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----------CSBCTTTCCB
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----------CCcCcCCCcc
Confidence 4677776543 34444579999999998655432 1469999643
No 304
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=40.62 E-value=13 Score=31.78 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCceeeccCCCccccccccc-ccccccCcccHhhHhhcCcccCCC
Q 001149 147 SEKFYCTACNNVAIEVHPHP-ILNVIVCKDCKCLLEKKMHVKDAD 190 (1138)
Q Consensus 147 ~~~~~C~~C~~~~~~~~~Hp-~l~~~~C~~C~~~~~~~~~~~d~d 190 (1138)
.-.+.| +||....---..+ -+.+-+|..|..||.-..-..|..
T Consensus 11 ~v~~~~-s~g~~f~t~ST~~~ei~vdi~s~~HPFyTG~qk~vdt~ 54 (70)
T 1vs6_Z 11 EITASC-SCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATG 54 (70)
T ss_dssp CCBCCC-CSSCCCCCBCCCCCCCCCBCCSSSCCBCCCCCTTTTTH
T ss_pred EEEEEE-CCCCEEEEeecCCCcEeeeecCCCCccCcCcEEEEecc
Confidence 445889 8997743211112 288999999999998766555543
No 305
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.38 E-value=62 Score=40.94 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=21.9
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
...+.+|.-+.|.|||..+-++...+.
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 456789999999999998887776653
No 306
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=40.12 E-value=62 Score=35.29 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=22.7
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
.-.++.-..|.|||-.+..++..+.... .+++++|.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEK---HKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT---CCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 3444556789999988877766654311 23566665
No 307
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=40.08 E-value=1e+02 Score=34.51 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=23.3
Q ss_pred EEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 416 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 416 LADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
..--=|.|||..|+.+...+...+ +++|+|-
T Consensus 149 ~s~KGGvGKTT~a~nLA~~La~~g----~rVlliD 179 (373)
T 3fkq_A 149 TSPCGGVGTSTVAAACAIAHANMG----KKVFYLN 179 (373)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHHT----CCEEEEE
T ss_pred ECCCCCChHHHHHHHHHHHHHhCC----CCEEEEE
Confidence 345678999999999888876542 4777776
No 308
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=39.95 E-value=37 Score=44.89 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=45.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcc--cCCCceEEEeCcchHH
Q 001149 379 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN--LGLRTALIVTPVNVLH 456 (1138)
Q Consensus 379 l~~~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~--~~~k~vLIV~P~sll~ 456 (1138)
....|-|-|..+|. ..+...++...-|+|||.+.+.-+..++..+. .....+|||+++....
T Consensus 7 ~~~~~t~eQ~~~i~----------------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa 70 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIV----------------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASA 70 (1232)
T ss_dssp ---CCCHHHHHHHH----------------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHH
T ss_pred CCCCCCHHHHHHHh----------------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHH
Confidence 34568899999885 34678889999999999998887777766532 2346899999975543
No 309
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.58 E-value=9.3 Score=34.15 Aligned_cols=50 Identities=20% Similarity=0.541 Sum_probs=32.8
Q ss_pred cccccccCCC---CceeecCCccccccccccccCCCccccccccc--CCCceeec--CCcc
Q 001149 193 ECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQ--ASCWQCCC--CSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~g---g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~--~~~W~C~~--C~~~ 246 (1138)
...|.+|.+- .+.+.-..|...||..|+...+... +.+ ..+..|+. |.-.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~----i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL----IKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHH----HHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHH----hhcCCcccccCccccCCCC
Confidence 4479999854 2344445699999999987654332 111 13578999 9754
No 310
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=39.57 E-value=70 Score=36.17 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=67.1
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...|||-...+-.+......+.++||.+.....+.-+.+.+..+. ..|+.+..+.|+++..+|...+..+.
T Consensus 44 pTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~---------~~~~~v~~~~g~~~~~~~~~~~~~l~ 114 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA---------DEKVKIFGFYSSMKKEEKEKFEKSFE 114 (414)
T ss_dssp CSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHC---------CSSCCEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHc---------cCCceEEEEECCCChhhHHHHHHHhh
Confidence 356889875544444444678899999999988888888887631 13789999999999988888888887
Q ss_pred CCCCCCceEEEeeccccccC---CCcccCCEEEE
Q 001149 853 EPLNKRVKCTLISTRAGSLG---INLHSANRVII 883 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~G---LNLt~An~VIi 883 (1138)
.. ...|++.|......- +++...+.||+
T Consensus 115 ~~---~~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 115 ED---DYHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HT---CCSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred cC---CCCEEEECHHHHHHHHHHhccccccEEEE
Confidence 52 245566665443211 33445555544
No 311
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.51 E-value=1.6e+02 Score=32.25 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.9
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHH
Q 001149 413 GCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 413 GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
..+|.-+.|.|||..+-+++..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 388899999999988777665443
No 312
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=39.19 E-value=7.1 Score=33.32 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=25.6
Q ss_pred CceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCC
Q 001149 148 EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADC 191 (1138)
Q Consensus 148 ~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~ 191 (1138)
-.|.|+ ||....--.--+.+.+-+|..|..||.-..-..|..|
T Consensus 12 v~v~c~-~g~~f~t~ST~~~i~vdi~S~~HPFyTGkqk~vdt~G 54 (71)
T 3v2d_4 12 ARIICG-CGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEG 54 (71)
T ss_dssp EEEEET-TSCEEEEEESSSEEEESCCTTTSSSSSCC--------
T ss_pred EEEEEC-CCCEEEeeeeccCEEEEecCCCCCCCCCCEEEEcccC
Confidence 458997 9976432112356889999999999986655555444
No 313
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=38.64 E-value=9.6 Score=33.08 Aligned_cols=39 Identities=18% Similarity=0.500 Sum_probs=27.1
Q ss_pred ccccccCCCCceeecCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+.-.-..---|... ||..|+... |.|++|.-.
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------------~~CP~Cr~~ 58 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------------QSCPVCRSR 58 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------------SBCTTTCCB
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------------CcCCCCCch
Confidence 368898765543333358887 999996422 699999754
No 314
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=38.04 E-value=80 Score=31.57 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.0
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
.+.+|.-+.|.|||..+-++...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788899999999998888776654
No 315
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=37.50 E-value=15 Score=33.24 Aligned_cols=59 Identities=7% Similarity=-0.119 Sum_probs=38.2
Q ss_pred cccccccCCCCceeecCCcc-ccccccccccCCCcccccccccCCCceeecCCc-------chHhHHHHHHHhhhcc
Q 001149 193 ECYCVWCGRSSDLVSCKSCK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP-------SLLKRLTSELGRAMGS 261 (1138)
Q Consensus 193 ~~~C~~C~~gg~l~~Cd~C~-~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~-------~~~~~l~~~~~~~~~~ 261 (1138)
+..|.+|.+--.-=..-.|. .+||..||...+.. .-.|++|.- .|...|...++..+..
T Consensus 22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----------~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----------DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----------SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred hcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----------CCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence 45789988765433334588 99999999776542 237999953 2445556666655544
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=37.20 E-value=43 Score=41.97 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.5
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLY 433 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~ 433 (1138)
....|.+|.-..|.|||+.|=+++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999988776653
No 317
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=36.98 E-value=6 Score=40.24 Aligned_cols=44 Identities=0% Similarity=-0.214 Sum_probs=29.8
Q ss_pred CcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCC
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.+..|.+|++--.--.+-.|..+||..||...+.. .+. .||+|.
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~--------~~~-tcP~t~ 148 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQR--------VGH-FDPVTR 148 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--------TCS-BCTTTC
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHh--------CCC-CCCCCc
Confidence 44578888876543333369999999998766532 133 699995
No 318
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=36.85 E-value=12 Score=33.88 Aligned_cols=49 Identities=22% Similarity=0.505 Sum_probs=20.7
Q ss_pred cccCCCCceeeccCCCcccccccccccccccCcccHhhHhhcCcccCCCC
Q 001149 142 HSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADC 191 (1138)
Q Consensus 142 ~~~~~~~~~~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~ 191 (1138)
.-+-..-.|.|+ ||....--.--+.+.+-+|..|..||.-..-..|..|
T Consensus 32 HP~Y~~v~v~ct-~G~~f~t~ST~~~i~vDI~S~~HPFYTGkqk~vdt~G 80 (97)
T 3f1f_4 32 HPKLVPARIICG-CGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEG 80 (97)
T ss_dssp ----CCCEEEET-TEEEEECCCSSCCEEESSCTTC---------------
T ss_pred CCCCeEEEEEEC-CCCEEEeeeeeeEEEEEECCCCCCCCcCCEEEEcccC
Confidence 333335569995 9976432222356889999999999986655555544
No 319
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=36.15 E-value=5.7 Score=37.21 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=26.9
Q ss_pred ccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 194 CYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
..|.+|.+--. .+.. .|..+||..||...+... ...|++|..
T Consensus 19 ~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~---------~~~CP~Cr~ 61 (118)
T 3hct_A 19 YECPICLMALREAVQT-PCGHRFCKACIIKSIRDA---------GHKCPVDNE 61 (118)
T ss_dssp GBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH---------CSBCTTTCC
T ss_pred CCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhC---------CCCCCCCCC
Confidence 36777764432 2233 599999999986544222 237999964
No 320
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=36.10 E-value=1.3e+02 Score=35.74 Aligned_cols=100 Identities=19% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHHHHHHHh-hcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCC-CCHHHHHHHHHHHcCCCCC
Q 001149 780 VLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGR-TESSERQKLVERFNEPLNK 857 (1138)
Q Consensus 780 ~~L~eiL~~~-~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGs-ts~~eR~~~i~~Fn~~~n~ 857 (1138)
..+.+.|..+ ...+..+|||..+-..++.+.+. .++.+ .+.|. ++ +..+++.|... +
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---------------~~~~v-~~q~~~~~---~~~~~~~~~~~--~ 437 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---------------ISLPK-YVESEDSS---VEDLYSAISAN--N 437 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---------------CCSSE-EECCSSCC---HHHHHHHTTSS--S
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---------------cCCcE-EEcCCCCC---HHHHHHHHHhc--C
Confidence 3444444443 33466888888888777776641 12333 33332 33 56788899642 2
Q ss_pred CceEEEeec--cccccCCCcc---c--CCEEEEEcCCCCcchHHHHHHHHHhh
Q 001149 858 RVKCTLIST--RAGSLGINLH---S--ANRVIIVDGSWNPTYDLQAIYRAWRY 903 (1138)
Q Consensus 858 ~v~v~LiST--kaGg~GLNLt---~--An~VIi~D~~WNP~~~~QAigR~~Ri 903 (1138)
.. +|+++ ....+|||+. + +..||+.-.|+-+. +-....|.-.+
T Consensus 438 ~~--vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~ 487 (551)
T 3crv_A 438 KV--LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRV 487 (551)
T ss_dssp SC--EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHT
T ss_pred Ce--EEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHH
Confidence 22 45555 6889999999 3 67888888887444 44444444333
No 321
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=35.93 E-value=65 Score=39.44 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=32.4
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc
Q 001149 382 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 453 (1138)
Q Consensus 382 ~LrphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s 453 (1138)
.+-+.|.+++..+.+. .. .-.+|-.+-|-|||-. ++++...+. ..++|.+|..
T Consensus 175 ~~T~dQ~~al~~~~~~-----------~~-~~~vlta~RGRGKSa~-lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTM-----------PP-GVAAVTAARGRGKSAL-AGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SCCHHHHHHHHHHTTC-----------CS-EEEEEEECTTSSHHHH-HHHHHHHSS------SCEEEECSSC
T ss_pred CCCHHHHHHHHHHHHh-----------hh-CeEEEecCCCCCHHHH-HHHHHHHHH------hCcEEECCCH
Confidence 5677899999766431 11 2356777799999944 444433321 2457777753
No 322
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=35.52 E-value=97 Score=34.77 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=30.0
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcc
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 453 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~s 453 (1138)
.+.-.+|+-..|.|||..++.++...... ..++++|....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence 34567889999999999999988776543 24677777643
No 323
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=35.34 E-value=1.1e+02 Score=40.18 Aligned_cols=99 Identities=6% Similarity=-0.014 Sum_probs=67.8
Q ss_pred CCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 774 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 774 ~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
..+||-.+.+-.+-.....|.+++|.+..+..+....+.+..... ..++.+..+.|..+..++...+.....
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~--------~~~i~v~~l~~~~~~~~~~~~~~~l~~ 704 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA--------NWPVRIEMISRFRSAKEQTQILAEVAE 704 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHST--------TTTCCEEEESTTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhh--------cCCCeEEEEeCCCCHHHHHHHHHHHhc
Confidence 468898766544444445688999999988777666666654210 136788999999999999999998875
Q ss_pred CCCCCceEEEeeccccccCCCcccCCEEEE
Q 001149 854 PLNKRVKCTLISTRAGSLGINLHSANRVII 883 (1138)
Q Consensus 854 ~~n~~v~v~LiSTkaGg~GLNLt~An~VIi 883 (1138)
+.+.|++.+.......+++.....||+
T Consensus 705 ---g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 705 ---GKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ---TCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred ---CCCCEEEECHHHHhCCccccccceEEE
Confidence 345566666566655566655544443
No 324
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.85 E-value=16 Score=30.65 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=29.5
Q ss_pred CcccccccCCCCceeecCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.+..|.+|-+.-.-+.---|... ||..|+.. .+.|++|.-.
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------------~~~CP~CR~~ 55 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------------FQQCPMCRQF 55 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------------CSSCTTTCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------------CCCCCCCCcc
Confidence 34579999876654444558877 99999652 3789999754
No 325
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=34.80 E-value=45 Score=36.25 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=28.2
Q ss_pred CCCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchH
Q 001149 409 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 455 (1138)
Q Consensus 409 ~~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll 455 (1138)
....|.+|.-+.|.|||..|-++...+ ..+++.|....+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l-------~~~~i~v~~~~l~ 73 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM-------GINPIMMSAGELE 73 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH-------TCCCEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-------CCCEEEEeHHHhh
Confidence 345678888999999999988877665 2355555554443
No 326
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=34.18 E-value=40 Score=37.01 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.9
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAM 436 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~ 436 (1138)
+.+.+|.-+.|+|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998887765
No 327
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=33.58 E-value=6.9 Score=38.13 Aligned_cols=42 Identities=19% Similarity=0.552 Sum_probs=27.7
Q ss_pred ccccccCCCC-ceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 194 CYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 194 ~~C~~C~~gg-~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
..|.+|.+-= +.+.. .|...||..||...+. .+.-.|++|.-
T Consensus 32 ~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~---------~~~~~CP~Cr~ 74 (141)
T 3knv_A 32 YLCSACRNVLRRPFQA-QCGHRYCSFCLASILS---------SGPQNCAACVH 74 (141)
T ss_dssp GBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGG---------GSCEECHHHHH
T ss_pred cCCCCCChhhcCcEEC-CCCCccCHHHHHHHHh---------cCCCCCCCCCC
Confidence 3577776542 22332 6999999999876543 23467999953
No 328
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=32.84 E-value=12 Score=38.04 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=25.0
Q ss_pred CccccccccccccCCCcccccccccCCCceeecCC
Q 001149 210 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 210 ~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
.|||++|..+--.++|...... ...-+.+|+.|.
T Consensus 108 ~CPRv~C~~q~~LPvGlSd~pg-~~~VKlyCP~C~ 141 (182)
T 1qf8_A 108 YCPRVYCENQPMLPIGLSDIPG-EAMVKLYCPKCM 141 (182)
T ss_dssp BCCBGGGTTCBCEEECSCSSTT-SCBCEEECTTTC
T ss_pred CCCccccCCCcccCCccCCCCC-CCceEEECCCcc
Confidence 3999999988777788665542 233468999995
No 329
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.65 E-value=13 Score=31.57 Aligned_cols=38 Identities=21% Similarity=0.523 Sum_probs=25.2
Q ss_pred cccccCCCCceeecCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg~l~~Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.|.+|.+.-.-..--.|... ||..|+.. ...|++|.-.
T Consensus 27 ~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------------~~~CP~Cr~~ 65 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEA--------------VDKCPMCYTV 65 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------------CSBCTTTCCB
T ss_pred CCCcCCCCCCCEEEecCCCHHHHHHHhhC--------------CCCCccCCce
Confidence 57777665433333358888 99999732 2679999753
No 330
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=32.43 E-value=40 Score=44.35 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=45.2
Q ss_pred EEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHHHHCCCC-CCCeEEEEecC
Q 001149 416 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE-LKPLRVFMLED 480 (1138)
Q Consensus 416 LADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~kw~p~~-~~~l~V~~~~~ 480 (1138)
+-..-|+|||.+++.-+++++..+. ...++|+|||...-.+-...+...++.. ...+.|..+|.
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~-~~~~il~lVP~q~TFt~~~rl~~~l~~~~~~~~~V~TFhs 70 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAP-FGKPIIFLVPDQMTFLMEYELAKTPDMGGMIRAQVFSFSR 70 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCT-TSSCEEEECCGGGHHHHHHHHTCCSSCSEESSEEEECHHH
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCC-CCCcEEEEecCcccHHHHHHHHHhhhhcceeeeEEecHHH
Confidence 3345799999999998888877643 3478999999998777666666555432 23456666654
No 331
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=31.97 E-value=1.7e+02 Score=40.38 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 456 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~ 456 (1138)
.+.+.+|.-..|.|||..|++++...... ..+++++.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~----G~~v~Fi~~e~~~~ 1468 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALD 1468 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEEcccccC
Confidence 35678899999999999999998876543 24677777665443
No 332
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=31.93 E-value=1.7e+02 Score=31.25 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=26.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
.|.-.+|+-..|.|||.-+..++..+.... ..+++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeC
Confidence 455678899999999987776665543321 136777654
No 333
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=31.65 E-value=17 Score=40.90 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=28.1
Q ss_pred ccccccCCCCceeecCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 194 CYCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 194 ~~C~~C~~gg~l~~Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
..|.+|.+.-.-..---|... ||..|+... +.|++|...
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------------~~CP~CR~~ 335 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------------RKCPICRGI 335 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------------SBCTTTCCB
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcC--------------CcCCCCCCC
Confidence 469999876543333368888 999997533 689999754
No 334
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=31.47 E-value=12 Score=34.10 Aligned_cols=43 Identities=9% Similarity=-0.088 Sum_probs=29.7
Q ss_pred CcccccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 192 SECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.+..|.+|.+--. .+.- .|..+||..||...+.. .-.|++|.-
T Consensus 28 ~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~----------~~~cP~~~~ 71 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLN----------SPTDPFNRQ 71 (100)
T ss_dssp TTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTS----------CSBCSSSCC
T ss_pred HhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHc----------CCCCCCCCC
Confidence 3457899886653 3333 39999999999776541 247999953
No 335
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.25 E-value=18 Score=34.99 Aligned_cols=47 Identities=28% Similarity=0.696 Sum_probs=30.9
Q ss_pred cccccccCCCC-----ceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 193 ECYCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 193 ~~~C~~C~~gg-----~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
+..|..|+..= .=..|-.|.+.+|..|-..... -.....|.|-+|.-
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~------~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN------NRPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC------SSSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCC------CCCccceechhhHH
Confidence 34788886432 2347889999999999432211 12345699999954
No 336
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=30.94 E-value=1.5e+02 Score=35.61 Aligned_cols=50 Identities=12% Similarity=-0.034 Sum_probs=30.8
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhc----------ccCCCceEEEeCcchHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSV----------NLGLRTALIVTPVNVLHNWK 459 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~----------~~~~k~vLIV~P~sll~qW~ 459 (1138)
.+...+|.-+.|.|||..+-++...+.... .....|.+.++|.....+..
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 457899999999999987766554332110 00124566777766554433
No 337
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=30.75 E-value=12 Score=35.33 Aligned_cols=44 Identities=23% Similarity=0.685 Sum_probs=29.9
Q ss_pred cccccccCCC-------CceeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 193 ECYCVWCGRS-------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 193 ~~~C~~C~~g-------g~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
+..|.+|.+. |+.+.--.|..+||..||...+... -.|++|.-.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----------~~CP~Cr~~ 57 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----------NTCPTCRKK 57 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC----------SBCTTTCCB
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC----------CCCCCCCCc
Confidence 4468888643 4444555799999999987664322 279999653
No 338
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=30.69 E-value=32 Score=38.74 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...+.+|.-++|+|||..|-++...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999888776654
No 339
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=30.27 E-value=1.5e+02 Score=28.90 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhh
Q 001149 776 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSK 815 (1138)
Q Consensus 776 S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~ 815 (1138)
..+.....+++.+....|.||+|++.....++.|-+.|=.
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~ 61 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWA 61 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhC
Confidence 4577888899999999999999999999999999888743
No 340
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.08 E-value=1.8e+02 Score=26.18 Aligned_cols=95 Identities=9% Similarity=-0.027 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC-CCCCceEEEeeccccc
Q 001149 792 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP-LNKRVKCTLISTRAGS 870 (1138)
Q Consensus 792 ~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~-~n~~v~v~LiSTkaGg 870 (1138)
.+..+..++.....+..+.. ...+.+.+|-.++...-..++...+.. ..+.+.++++|...-.
T Consensus 26 ~~~~v~~~~~~~~a~~~l~~----------------~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 89 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQALA----------------HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPR 89 (133)
T ss_dssp TTSEEEEESSHHHHHHHHHH----------------SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-
T ss_pred CCcEEEEECCHHHHHHHHhc----------------CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcH
Confidence 56677766665555544432 346788888766544445566665542 1245667888765322
Q ss_pred cCCCcc--cCCEEEEEcCCCCcchHHHHHHHHHhhC
Q 001149 871 LGINLH--SANRVIIVDGSWNPTYDLQAIYRAWRYG 904 (1138)
Q Consensus 871 ~GLNLt--~An~VIi~D~~WNP~~~~QAigR~~RiG 904 (1138)
.-.... +|+. ++.-++++....+++.++.+-+
T Consensus 90 ~~~~~~~~g~~~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 90 TEGPADQPVPDA--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp ----TTSCCCSE--EEESSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCce--EEeccCCHHHHHHHHHHHHhhh
Confidence 222222 3443 3446889999999999886654
No 341
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=27.92 E-value=1.3e+02 Score=39.06 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=70.9
Q ss_pred cCCCchHHHHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 773 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 773 ~~~S~Kl~~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
...|||-.+.+-.+......+.++||.+..+..+..+.+.+..+. ..|+.+..++|+++..+|...+..+.
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~---------~~~i~v~~l~Gg~~~~er~~~~~~l~ 171 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA---------DEKVKIFGFYSSMKKEEKEKFEKSFE 171 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS---------CTTSCEEEECTTCCTTHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh---------CCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 356899887666666555778999999999998888888888642 25789999999999888888888888
Q ss_pred CCCCCCceEEEeeccccccC---CCcccCCEEEE
Q 001149 853 EPLNKRVKCTLISTRAGSLG---INLHSANRVII 883 (1138)
Q Consensus 853 ~~~n~~v~v~LiSTkaGg~G---LNLt~An~VIi 883 (1138)
.+ .+.|++.+....-.- +++.....||+
T Consensus 172 ~g---~~~IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 172 ED---DYHILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp TS---CCSEEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred CC---CCCEEEECHHHHHHHHHhhcccCcCEEEE
Confidence 62 345566665443111 33445555555
No 342
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.72 E-value=32 Score=30.30 Aligned_cols=16 Identities=31% Similarity=1.016 Sum_probs=14.1
Q ss_pred eeecCCcccccccccc
Q 001149 205 LVSCKSCKTLFCTTCV 220 (1138)
Q Consensus 205 l~~Cd~C~~~f~~~C~ 220 (1138)
.+.|..|.+.||..|-
T Consensus 43 ~v~C~~C~~~FC~~C~ 58 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCK 58 (86)
T ss_dssp CEECTTTCCEECSSSC
T ss_pred ceEeCCCCCccccccC
Confidence 4789999999999994
No 343
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=26.98 E-value=1.6e+02 Score=40.77 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=35.8
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 459 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~ 459 (1138)
++...+|+-+.|.|||.-++.++...... .+++++|.-.....||.
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~----g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHH
Confidence 45667899999999999888888766432 35789988777777775
No 344
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=26.94 E-value=3.1e+02 Score=30.00 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=22.2
Q ss_pred eEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEe
Q 001149 414 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 450 (1138)
Q Consensus 414 gILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~ 450 (1138)
..+.-..|.|||..+..++..+... .++++++.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~----g~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAEL----GYKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEe
Confidence 3344679999998887776665432 35677765
No 345
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=26.87 E-value=54 Score=38.07 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+.|.+|.-..|.|||..|-++...+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 45789999999999999998887664
No 346
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=26.77 E-value=17 Score=29.96 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=30.6
Q ss_pred CCCcccccccCCCCc--eeecCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 190 DCSECYCVWCGRSSD--LVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 190 d~~~~~C~~C~~gg~--l~~Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
...+..|.+|.+.-. .+.---|... ||..|+.... . ..+.|++|...
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~---------~-~~~~CPiCR~~ 53 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK---------K-AGASCPICKKE 53 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH---------H-TTCBCTTTCCB
T ss_pred CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH---------H-hCCcCCCcCch
Confidence 444568999987532 3333457776 9999965432 1 23799999754
No 347
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=26.65 E-value=11 Score=33.07 Aligned_cols=44 Identities=7% Similarity=-0.173 Sum_probs=29.9
Q ss_pred CcccccccCCCCceeecCCccccccccccccCCCcccccccccCCCceeecCCc
Q 001149 192 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 245 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~ 245 (1138)
.+..|.+|.+--.-=..-.|..+||..||...+.. .-.|++|.-
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----------~~~cP~~~~ 56 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----------SPTDPFNRQ 56 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----------CSBCTTTCC
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----------CCCCCCCcC
Confidence 35579999876542233349999999998766431 247999963
No 348
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=26.63 E-value=60 Score=33.11 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=25.4
Q ss_pred EEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeC
Q 001149 415 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 451 (1138)
Q Consensus 415 ILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P 451 (1138)
|..-..|.|||..++.++..+.+.+ +++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G----~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG----YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT----CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC----CCEEEEcc
Confidence 4456689999999999988876543 47888766
No 349
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=26.59 E-value=73 Score=35.51 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=20.5
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
.+.+.+|.-+.|.|||..|-++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999988776554
No 350
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=26.54 E-value=10 Score=35.21 Aligned_cols=42 Identities=31% Similarity=0.626 Sum_probs=27.4
Q ss_pred cccccCCCCc-eeecCCccccccccccccCCCcccccccccCCCceeecCCcc
Q 001149 195 YCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 195 ~C~~C~~gg~-l~~Cd~C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.|.+|.+.=. .+. -.|..+||..||...+... .-.|++|...
T Consensus 25 ~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~---------~~~CP~Cr~~ 67 (116)
T 1rmd_A 25 SCQICEHILADPVE-TSCKHLFCRICILRCLKVM---------GSYCPSCRYP 67 (116)
T ss_dssp BCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT---------CSBCTTTCCB
T ss_pred CCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC---------cCcCCCCCCC
Confidence 5777765432 222 3699999999987654321 2369999643
No 351
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.37 E-value=18 Score=30.79 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=26.1
Q ss_pred cccccccCcccHhhHhhcCcccCCCCCcccccccCCCCceeecCCccccccccccccC
Q 001149 166 PILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRN 223 (1138)
Q Consensus 166 p~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~f~~~C~~~~ 223 (1138)
-+|+.+.|+.|+.-.. ++. ..|+|+ |..|.++|-..---++
T Consensus 4 ~LL~iL~CP~ck~~L~-----~~~-----------~~~~Li-C~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE-----FQR-----------AQAELV-CNADRLAFPVRDGVPI 44 (70)
T ss_dssp CCCCCCBCTTTCCBEE-----EET-----------TTTEEE-ETTTTEEEEEETTEEC
T ss_pred HHhhheECCCCCCcCE-----EeC-----------CCCEEE-cCCCCceecCCCCeee
Confidence 3677888888887432 221 245554 7889999987753333
No 352
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=26.37 E-value=96 Score=34.92 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=59.9
Q ss_pred CCceEEEEeCCC------CHHHHHHHHHHHcCCCCCCceEEEeeccc--cccCCCcc------cCCEEEEEcCCCCcchH
Q 001149 828 KGKDWYRLDGRT------ESSERQKLVERFNEPLNKRVKCTLISTRA--GSLGINLH------SANRVIIVDGSWNPTYD 893 (1138)
Q Consensus 828 ~Gi~~~rldGst------s~~eR~~~i~~Fn~~~n~~v~v~LiSTka--Gg~GLNLt------~An~VIi~D~~WNP~~~ 893 (1138)
.|++.+.+-|+| +.++|.++++...+..++++.|+. .+.+ -.+-+.+. +|+-|.++-|.|++...
T Consensus 92 ~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia-Gvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq 170 (360)
T 4dpp_A 92 NGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSI 170 (360)
T ss_dssp TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred cCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH
Confidence 588888888875 578998888876543345666543 2211 11122232 58999999999988755
Q ss_pred HHHHHHHHhhCCCCcEEEEEEe--cCCCHHHHHHHHH
Q 001149 894 LQAIYRAWRYGQTKPVFAYRLM--AHGTMEEKIYKRQ 928 (1138)
Q Consensus 894 ~QAigR~~RiGQ~k~V~VyrLv--~~gTiEekI~~rq 928 (1138)
...+.---.+-..-||.+|.+= +.-.+.-..+.+.
T Consensus 171 ~gl~~hf~~IA~a~PiilYNiP~rTg~~ls~e~l~~L 207 (360)
T 4dpp_A 171 EGLIAHFQSVLHMGPTIIYNVPGRTGQDIPPRAIFKL 207 (360)
T ss_dssp HHHHHHHHTTGGGSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEeCCcccCCCCCHHHHHHH
Confidence 4433322234444699999863 3344554444433
No 353
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=26.01 E-value=71 Score=35.36 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 384 KAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 384 rphQ~~gV~~m~~~~~~s~~r~~~~~~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+.++..+..+.+.+... ...+.+.+|.-+.|.|||..|-++...+
T Consensus 49 ~~~~~~~l~~l~~~~~~~------~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREG------KIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CHHHHHHHHHHHHHHHTT------CCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcC------CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 455666666665543221 1234688999999999999988887665
No 354
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=25.76 E-value=1.6e+02 Score=33.12 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=29.2
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 457 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~q 457 (1138)
.-.+|.-+.|.|||.-++.++..+... .+++++|.......+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~----gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM----GGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEecccccch
Confidence 345678899999998888887765432 347788876554443
No 355
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=24.47 E-value=15 Score=38.21 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=23.3
Q ss_pred ccccccccccccCCCcccccccccCCCceeecCC
Q 001149 211 CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 244 (1138)
Q Consensus 211 C~~~f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~ 244 (1138)
|||++|..+--.++|....... ..-+-+|+.|.
T Consensus 109 CPRv~C~~q~~LPvGlSD~pg~-~~VKlyCP~C~ 141 (215)
T 4dgl_A 109 CPRVYCENQPMLPIGLSDIPGE-AMVKLYCPKCM 141 (215)
T ss_dssp CCBGGGTSCBCEEEESCSSTTS-CBEEEECTTTC
T ss_pred CCccccCCCceeccccCCCCCc-cceeEeCCCcc
Confidence 9999999887777776644322 22357899995
No 356
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=24.43 E-value=1.1e+02 Score=31.44 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=33.2
Q ss_pred CcCeEEEcCCCccHHHHHHHHHHHHHHhcccCCCceEEEeCcchHHHHHHHHH
Q 001149 411 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 463 (1138)
Q Consensus 411 ~~GgILADeMGLGKTlqaIa~i~~l~~~~~~~~k~vLIV~P~sll~qW~~E~~ 463 (1138)
|.-.+++-+.|.|||.-++-+++...... .++++++.--....+....+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeecccCCHHHHHHHHH
Confidence 44578999999999998888776543332 347888775444444444443
No 357
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=24.04 E-value=10 Score=31.38 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=29.2
Q ss_pred CcccccccCCCCceee--cCCcccc-ccccccccCCCcccccccccCCCceeecCCcc
Q 001149 192 SECYCVWCGRSSDLVS--CKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 246 (1138)
Q Consensus 192 ~~~~C~~C~~gg~l~~--Cd~C~~~-f~~~C~~~~~~~~~~~~~~~~~~W~C~~C~~~ 246 (1138)
.+..|.+|-+.-.-.. ---|... ||..|+.... ...+.|++|.-.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~----------~~~~~CPiCR~~ 54 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK----------KRNKPCPVCRQP 54 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH----------HTTCCCTTTCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH----------HcCCcCCCcCcc
Confidence 3447999986544222 2358887 8999975432 134789999753
No 358
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=23.40 E-value=71 Score=37.10 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=20.3
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYT 434 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~ 434 (1138)
...|.+|.-.+|.|||..|-++...
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHH
Confidence 3578899999999999988776654
No 359
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.06 E-value=1.5e+02 Score=31.48 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCcCeEEEcCCCccHHHHHHHHHHHH
Q 001149 410 KGLGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 410 ~~~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+.+.+|.-+.|+|||..|-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999998887776554
No 360
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=22.60 E-value=1.5e+02 Score=27.88 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=37.7
Q ss_pred EEEEcCCcchH-------HHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHc
Q 001149 796 SLVFSQSIPTL-------DLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 852 (1138)
Q Consensus 796 vLVFSq~~~~l-------d~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn 852 (1138)
|.||+...... ..+..+|.. .|+.|..+|=++..+.|+.++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~------------kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEA------------NKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHH------------TTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHhcc
Confidence 67888776544 578888886 7999999999999999999999984
No 361
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.92 E-value=39 Score=30.71 Aligned_cols=37 Identities=24% Similarity=0.672 Sum_probs=25.8
Q ss_pred eeccCCCcccccccccccccccCcccHhhHhhcCcccCCCCCcccccccC-CCC
Q 001149 151 YCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCG-RSS 203 (1138)
Q Consensus 151 ~C~~C~~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~-~gg 203 (1138)
.|..|+. ..+|.-.|-+|..|. | ..++..|-+|| ..|
T Consensus 31 kC~iCDs-----~Vrp~~~VrICdeCs--~---------G~~~~rCIiCg~~~g 68 (109)
T 2k0a_A 31 KCPICDS-----YVRPKRKVRVCENCS--F---------GKQAKNCIICNLNVG 68 (109)
T ss_dssp CCTTTCC-----CCCCCEECEEEHHHH--T---------SSTTSBCTTTSSSBC
T ss_pred cccccCC-----ccCCcceEEECCcCC--C---------CCcCCceEEcCCCCC
Confidence 4555544 468888899999998 2 23356899999 555
No 362
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=21.91 E-value=94 Score=31.55 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=14.3
Q ss_pred cCCCccHHHHHHHHHHHHHH
Q 001149 418 HTMGLGKTFQVIAFLYTAMR 437 (1138)
Q Consensus 418 DeMGLGKTlqaIa~i~~l~~ 437 (1138)
---|.|||-|+=.+...+..
T Consensus 7 G~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 34699999998766655543
No 363
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.12 E-value=42 Score=28.03 Aligned_cols=30 Identities=23% Similarity=0.876 Sum_probs=22.0
Q ss_pred CCCcccccccCCCCceeecCCc-ccccccccc
Q 001149 190 DCSECYCVWCGRSSDLVSCKSC-KTLFCTTCV 220 (1138)
Q Consensus 190 d~~~~~C~~C~~gg~l~~Cd~C-~~~f~~~C~ 220 (1138)
+....+|.+|-+... +.|-.| .-.||..|-
T Consensus 5 ~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~ 35 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-LRCAGCDGDLYCARCF 35 (67)
T ss_dssp CCCCSSCTTTCSCCC-EEETTTTSEEECSSHH
T ss_pred CcCCCeeEEeCCCCe-EEecCCCCceehHHHH
Confidence 344568999998865 667777 568888883
No 364
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=20.89 E-value=68 Score=33.33 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=19.9
Q ss_pred cCeEEEcCCCccHHHHHHHHHHHH
Q 001149 412 LGCILAHTMGLGKTFQVIAFLYTA 435 (1138)
Q Consensus 412 ~GgILADeMGLGKTlqaIa~i~~l 435 (1138)
.+.+++-..|.|||..|.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457779999999999998877654
No 365
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.70 E-value=2.2e+02 Score=25.84 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=38.6
Q ss_pred eEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcC
Q 001149 795 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 853 (1138)
Q Consensus 795 KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~ 853 (1138)
-.+|||.-...|.-|..-++. .|+.++.+......+.|.+-++.|..
T Consensus 4 ifvvfssdpeilkeivreikr------------qgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKR------------QGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHH------------TTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHh------------CCeEEEEEecCchHHHHHHHHHHHHH
Confidence 357888888777777777765 78999999999998899999999975
No 366
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.60 E-value=36 Score=27.76 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=5.6
Q ss_pred ccccccCcccH
Q 001149 167 ILNVIVCKDCK 177 (1138)
Q Consensus 167 ~l~~~~C~~C~ 177 (1138)
++.+..|+.|.
T Consensus 8 ll~~~~Cp~C~ 18 (58)
T 1dl6_A 8 ALPRVTCPNHP 18 (58)
T ss_dssp CCSCCSBTTBS
T ss_pred ccccccCcCCC
Confidence 34444555554
No 367
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.17 E-value=1.3e+02 Score=26.81 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcchHHHHHHHHhhCCCCCCCcccccCCceEEEEeCCCCHHHHHHHHHHHcCC-CCCCc
Q 001149 781 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP-LNKRV 859 (1138)
Q Consensus 781 ~L~eiL~~~~~~g~KvLVFSq~~~~ld~Le~~L~~l~~~~~~~~~~~~Gi~~~rldGsts~~eR~~~i~~Fn~~-~n~~v 859 (1138)
.+..+|.. .|..+..++.....+..+.. ...+.+.+|-.++...-..+++..+.. ....+
T Consensus 18 ~l~~~L~~---~g~~v~~~~~~~~a~~~l~~----------------~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 18 TFKELLEM---LGFQADYVMSGTDALHAMST----------------RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp HHHHHHHH---TTEEEEEESSHHHHHHHHHH----------------SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHH---cCCCEEEECCHHHHHHHHHh----------------cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCC
Confidence 34444443 35566666655544444432 346788888666544444556555542 13456
Q ss_pred eEEEeeccccccCCCcc--cCCEEEEEcCCCCcchHHHHHHHHHhhCC
Q 001149 860 KCTLISTRAGSLGINLH--SANRVIIVDGSWNPTYDLQAIYRAWRYGQ 905 (1138)
Q Consensus 860 ~v~LiSTkaGg~GLNLt--~An~VIi~D~~WNP~~~~QAigR~~RiGQ 905 (1138)
.++++|......-.... +|+. ++.-|.++....+++.++++-++
T Consensus 79 ~ii~~s~~~~~~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 79 KFVAVSGFAKNDLGKEACELFDF--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp EEEEEECC-CTTCCHHHHHHCSE--EEESSCCHHHHHHHHHHHC----
T ss_pred CEEEEECCcchhHHHHHHHhhHH--heeCCCCHHHHHHHHHHhhccCC
Confidence 67777765433222211 3444 44567888888888888876554
Done!