Query 001150
Match_columns 1138
No_of_seqs 647 out of 3213
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-66 2.2E-71 599.2 41.1 511 385-1130 181-742 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-59 2.9E-64 549.2 32.6 456 403-1127 191-658 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 9.3E-50 2E-54 496.8 40.9 487 389-1128 173-679 (733)
4 KOG0736 Peroxisome assembly fa 100.0 1.1E-46 2.4E-51 443.0 39.7 409 643-1129 479-903 (953)
5 KOG0737 AAA+-type ATPase [Post 100.0 4.3E-48 9.4E-53 429.9 25.7 315 809-1129 4-319 (386)
6 COG0464 SpoVK ATPases of the A 100.0 6.3E-42 1.4E-46 409.5 34.7 430 598-1126 20-467 (494)
7 KOG0735 AAA+-type ATPase [Post 100.0 2.9E-41 6.4E-46 394.0 38.3 400 640-1131 480-895 (952)
8 COG1222 RPT1 ATP-dependent 26S 100.0 2.8E-41 6E-46 373.6 23.4 229 894-1125 144-376 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 4.4E-40 9.6E-45 365.2 22.1 233 894-1128 205-439 (491)
10 KOG0741 AAA+-type ATPase [Post 100.0 3.1E-40 6.7E-45 375.6 20.5 428 598-1119 258-721 (744)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-37 6.3E-42 356.6 23.9 235 893-1130 182-420 (802)
12 KOG0739 AAA+-type ATPase [Post 100.0 1.2E-37 2.7E-42 335.5 14.9 239 889-1131 121-360 (439)
13 COG0542 clpA ATP-binding subun 100.0 2.7E-35 5.8E-40 357.4 26.8 420 644-1126 249-759 (786)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-33 3.1E-38 334.4 36.3 374 642-1124 67-447 (489)
15 KOG0734 AAA+-type ATPase conta 100.0 2.2E-35 4.8E-40 336.5 19.5 229 892-1125 295-525 (752)
16 KOG0727 26S proteasome regulat 100.0 1.1E-32 2.3E-37 291.7 19.2 230 893-1125 147-380 (408)
17 KOG0732 AAA+-type ATPase conta 100.0 7.7E-34 1.7E-38 349.4 12.1 412 583-1086 288-728 (1080)
18 TIGR02639 ClpA ATP-dependent C 100.0 6.6E-31 1.4E-35 327.6 33.2 397 640-1127 260-717 (731)
19 PRK11034 clpA ATP-dependent Cl 100.0 5.2E-31 1.1E-35 326.1 31.2 397 639-1127 263-721 (758)
20 KOG0728 26S proteasome regulat 100.0 5.3E-32 1.1E-36 286.2 18.8 227 896-1125 142-372 (404)
21 KOG0652 26S proteasome regulat 100.0 8.2E-32 1.8E-36 286.1 17.8 229 895-1126 165-397 (424)
22 KOG0731 AAA+-type ATPase conta 100.0 1.1E-31 2.4E-36 323.7 21.3 228 893-1124 303-536 (774)
23 COG1223 Predicted ATPase (AAA+ 100.0 1.3E-31 2.8E-36 285.1 18.7 223 897-1126 117-340 (368)
24 PTZ00454 26S protease regulato 100.0 6.3E-31 1.4E-35 305.8 24.6 228 895-1125 139-370 (398)
25 KOG0740 AAA+-type ATPase [Post 100.0 2.1E-31 4.6E-36 306.2 15.9 230 895-1127 147-377 (428)
26 KOG0726 26S proteasome regulat 100.0 2.5E-31 5.3E-36 286.2 13.8 227 896-1125 180-410 (440)
27 KOG0729 26S proteasome regulat 100.0 6.6E-31 1.4E-35 279.8 16.1 226 896-1124 172-401 (435)
28 TIGR03345 VI_ClpV1 type VI sec 100.0 1E-28 2.2E-33 310.7 35.8 423 641-1128 266-837 (852)
29 KOG0737 AAA+-type ATPase [Post 100.0 1.8E-30 4E-35 289.6 16.8 232 374-821 72-315 (386)
30 PRK03992 proteasome-activating 100.0 1.6E-29 3.4E-34 294.4 23.7 227 895-1124 125-355 (389)
31 COG0465 HflB ATP-dependent Zn 100.0 1.2E-29 2.6E-34 302.0 19.4 227 895-1125 144-374 (596)
32 CHL00095 clpC Clp protease ATP 100.0 4.3E-28 9.3E-33 305.7 34.1 417 642-1128 259-788 (821)
33 PTZ00361 26 proteosome regulat 100.0 5.1E-29 1.1E-33 291.9 22.0 228 895-1125 177-408 (438)
34 TIGR03346 chaperone_ClpB ATP-d 100.0 2.7E-27 5.8E-32 299.4 36.2 419 641-1128 252-832 (852)
35 PRK10865 protein disaggregatio 100.0 8.8E-28 1.9E-32 302.9 31.1 417 642-1127 258-834 (857)
36 TIGR01241 FtsH_fam ATP-depende 100.0 2.3E-28 5E-33 292.9 22.6 229 892-1124 46-278 (495)
37 TIGR01242 26Sp45 26S proteasom 100.0 2.5E-27 5.4E-32 273.7 23.3 229 894-1125 115-347 (364)
38 TIGR03689 pup_AAA proteasome A 99.9 5.8E-27 1.3E-31 278.2 23.3 231 894-1127 175-460 (512)
39 KOG0651 26S proteasome regulat 99.9 6.9E-28 1.5E-32 262.5 12.9 229 894-1125 125-357 (388)
40 CHL00176 ftsH cell division pr 99.9 6.7E-27 1.5E-31 285.3 21.9 227 894-1124 176-406 (638)
41 KOG0730 AAA+-type ATPase [Post 99.9 8E-27 1.7E-31 274.6 20.8 224 897-1126 181-406 (693)
42 KOG0732 AAA+-type ATPase conta 99.9 2E-26 4.4E-31 284.3 18.6 226 896-1125 260-493 (1080)
43 PRK10733 hflB ATP-dependent me 99.9 1.5E-25 3.2E-30 275.7 22.7 226 895-1124 146-375 (644)
44 CHL00206 ycf2 Ycf2; Provisiona 99.9 7.9E-26 1.7E-30 288.0 19.5 185 933-1124 1627-1860(2281)
45 PLN00020 ribulose bisphosphate 99.9 2.4E-25 5.2E-30 251.1 20.6 189 933-1125 145-355 (413)
46 TIGR01243 CDC48 AAA family ATP 99.9 4.7E-25 1E-29 275.8 24.4 228 896-1127 173-402 (733)
47 COG1222 RPT1 ATP-dependent 26S 99.9 5.1E-26 1.1E-30 252.8 12.3 235 388-859 145-392 (406)
48 KOG0741 AAA+-type ATPase [Post 99.9 5.6E-25 1.2E-29 251.7 10.9 229 898-1129 216-463 (744)
49 KOG0738 AAA+-type ATPase [Post 99.9 1.6E-22 3.6E-27 225.8 20.8 222 377-817 196-432 (491)
50 KOG0736 Peroxisome assembly fa 99.8 1.3E-20 2.7E-25 224.1 17.1 286 353-859 631-932 (953)
51 COG0464 SpoVK ATPases of the A 99.8 2.9E-20 6.3E-25 223.2 17.2 231 372-815 216-460 (494)
52 KOG0740 AAA+-type ATPase [Post 99.8 1.2E-20 2.7E-25 217.7 13.0 218 389-823 148-377 (428)
53 KOG0739 AAA+-type ATPase [Post 99.8 2.5E-20 5.4E-25 202.3 13.4 223 375-815 115-348 (439)
54 KOG0734 AAA+-type ATPase conta 99.8 1.5E-19 3.2E-24 207.9 14.0 214 380-810 290-514 (752)
55 CHL00195 ycf46 Ycf46; Provisio 99.8 6.4E-19 1.4E-23 209.9 17.8 228 369-815 206-442 (489)
56 PTZ00454 26S protease regulato 99.8 4.4E-19 9.6E-24 207.0 14.0 236 386-859 137-386 (398)
57 KOG1051 Chaperone HSP104 and r 99.8 9.8E-18 2.1E-22 207.3 25.0 366 656-1085 279-785 (898)
58 CHL00181 cbbX CbbX; Provisiona 99.8 5.4E-18 1.2E-22 190.3 20.7 218 901-1129 23-262 (287)
59 TIGR02881 spore_V_K stage V sp 99.8 5.5E-18 1.2E-22 187.6 20.1 221 899-1130 4-247 (261)
60 PRK03992 proteasome-activating 99.8 1.1E-18 2.4E-23 203.7 14.2 236 387-860 124-373 (389)
61 PF00004 AAA: ATPase family as 99.8 2.2E-18 4.8E-23 168.4 13.2 130 939-1070 1-132 (132)
62 KOG0742 AAA+-type ATPase [Post 99.8 5.3E-18 1.1E-22 190.2 17.4 207 898-1115 352-586 (630)
63 TIGR02880 cbbX_cfxQ probable R 99.8 1.8E-17 4E-22 185.9 20.4 216 902-1128 23-260 (284)
64 KOG0744 AAA+-type ATPase [Post 99.8 3E-18 6.4E-23 188.4 12.3 216 897-1114 138-389 (423)
65 COG1223 Predicted ATPase (AAA+ 99.7 1.7E-17 3.8E-22 177.9 14.6 148 639-857 195-353 (368)
66 PTZ00361 26 proteosome regulat 99.7 5.8E-18 1.3E-22 199.2 12.0 233 390-859 179-424 (438)
67 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.5E-17 3.4E-22 213.4 14.4 155 634-834 1712-1879(2281)
68 TIGR01241 FtsH_fam ATP-depende 99.7 1.2E-17 2.6E-22 200.8 12.0 214 383-813 44-271 (495)
69 KOG0726 26S proteasome regulat 99.7 2E-18 4.3E-23 187.1 4.5 211 391-816 182-405 (440)
70 KOG0731 AAA+-type ATPase conta 99.7 2E-17 4.3E-22 201.1 11.7 215 385-815 302-531 (774)
71 KOG0727 26S proteasome regulat 99.7 2.5E-17 5.3E-22 175.7 10.1 215 386-815 147-374 (408)
72 KOG0728 26S proteasome regulat 99.7 8.8E-17 1.9E-21 171.3 12.3 150 640-859 226-388 (404)
73 TIGR03689 pup_AAA proteasome A 99.7 2.7E-16 5.8E-21 187.7 17.0 219 386-812 174-405 (512)
74 PF05496 RuvB_N: Holliday junc 99.7 2.8E-16 6.1E-21 168.5 13.3 190 898-1117 21-225 (233)
75 PLN00020 ribulose bisphosphate 99.7 2.7E-15 5.9E-20 170.3 21.2 103 631-778 186-313 (413)
76 KOG0743 AAA+-type ATPase [Post 99.7 1.1E-15 2.4E-20 175.9 18.2 219 898-1127 198-429 (457)
77 KOG0735 AAA+-type ATPase [Post 99.7 7.7E-16 1.7E-20 182.3 16.8 191 937-1127 432-630 (952)
78 CHL00176 ftsH cell division pr 99.7 4.3E-16 9.2E-21 191.1 12.8 216 383-814 172-400 (638)
79 TIGR01242 26Sp45 26S proteasom 99.6 5.3E-16 1.2E-20 179.8 12.8 214 387-815 115-341 (364)
80 COG2256 MGS1 ATPase related to 99.6 2.8E-15 6.1E-20 170.1 17.5 182 898-1120 21-219 (436)
81 TIGR00763 lon ATP-dependent pr 99.6 9.4E-15 2E-19 184.3 21.4 208 902-1127 321-560 (775)
82 KOG0652 26S proteasome regulat 99.6 2.2E-15 4.8E-20 161.5 11.8 235 390-861 167-414 (424)
83 KOG0729 26S proteasome regulat 99.6 1.4E-15 3E-20 163.4 9.7 216 388-819 171-400 (435)
84 PRK10733 hflB ATP-dependent me 99.6 3.1E-15 6.8E-20 184.8 13.1 126 642-815 232-370 (644)
85 TIGR02639 ClpA ATP-dependent C 99.6 1.5E-14 3.2E-19 181.6 18.8 184 899-1107 180-386 (731)
86 TIGR00635 ruvB Holliday juncti 99.6 3.9E-14 8.5E-19 159.7 20.5 199 899-1120 2-208 (305)
87 PRK00080 ruvB Holliday junctio 99.6 3.7E-14 8.1E-19 162.2 20.0 201 898-1121 22-230 (328)
88 COG0465 HflB ATP-dependent Zn 99.6 6.7E-15 1.5E-19 176.6 13.4 218 383-817 139-370 (596)
89 PRK14956 DNA polymerase III su 99.6 7.3E-14 1.6E-18 165.0 20.2 185 897-1118 14-227 (484)
90 PRK07003 DNA polymerase III su 99.6 7.3E-14 1.6E-18 170.4 19.7 185 898-1119 13-226 (830)
91 COG2255 RuvB Holliday junction 99.6 7.4E-14 1.6E-18 152.6 17.5 196 898-1116 23-226 (332)
92 PRK12323 DNA polymerase III su 99.6 6.3E-14 1.4E-18 169.2 18.5 184 898-1118 13-230 (700)
93 PRK05342 clpX ATP-dependent pr 99.5 1.3E-13 2.9E-18 161.8 18.2 226 903-1128 73-385 (412)
94 PRK11034 clpA ATP-dependent Cl 99.5 1.1E-13 2.4E-18 172.8 18.4 196 900-1119 185-407 (758)
95 KOG0651 26S proteasome regulat 99.5 2.5E-14 5.5E-19 157.2 11.0 214 389-817 127-353 (388)
96 PRK14949 DNA polymerase III su 99.5 4.8E-13 1E-17 166.0 20.7 184 898-1118 13-225 (944)
97 PRK14960 DNA polymerase III su 99.5 5.4E-13 1.2E-17 161.6 20.1 185 898-1119 12-225 (702)
98 KOG0615 Serine/threonine prote 99.5 2.2E-14 4.8E-19 162.5 7.5 110 122-231 41-161 (475)
99 PRK14962 DNA polymerase III su 99.5 9E-13 2E-17 157.4 21.3 185 897-1118 10-223 (472)
100 PRK07994 DNA polymerase III su 99.5 7.5E-13 1.6E-17 162.0 20.6 184 898-1118 13-225 (647)
101 TIGR03345 VI_ClpV1 type VI sec 99.5 5.3E-13 1.1E-17 169.3 19.6 196 898-1118 184-407 (852)
102 TIGR00390 hslU ATP-dependent p 99.5 4.4E-13 9.6E-18 155.4 17.0 179 902-1080 13-342 (441)
103 TIGR02902 spore_lonB ATP-depen 99.5 5.6E-13 1.2E-17 161.7 17.3 204 898-1123 62-314 (531)
104 PRK14961 DNA polymerase III su 99.5 2.4E-12 5.2E-17 149.5 21.8 184 898-1118 13-225 (363)
105 PRK14958 DNA polymerase III su 99.5 8.9E-13 1.9E-17 158.9 18.7 186 898-1120 13-227 (509)
106 PRK05201 hslU ATP-dependent pr 99.5 5E-13 1.1E-17 155.1 15.8 179 902-1080 16-344 (443)
107 KOG2004 Mitochondrial ATP-depe 99.5 1.3E-12 2.9E-17 155.7 19.3 213 901-1126 411-654 (906)
108 PRK10865 protein disaggregatio 99.5 5.6E-13 1.2E-17 169.4 17.1 164 899-1087 176-357 (857)
109 COG0466 Lon ATP-dependent Lon 99.5 1.5E-12 3.2E-17 156.4 19.4 215 902-1128 324-564 (782)
110 CHL00095 clpC Clp protease ATP 99.5 9E-13 1.9E-17 167.5 18.7 196 899-1119 177-399 (821)
111 TIGR03346 chaperone_ClpB ATP-d 99.5 1.4E-12 3E-17 166.2 19.7 196 899-1119 171-394 (852)
112 PLN03025 replication factor C 99.5 2.3E-12 4.9E-17 147.1 19.4 182 897-1116 9-203 (319)
113 TIGR00382 clpX endopeptidase C 99.5 1.4E-12 3.1E-17 152.7 18.0 226 903-1128 79-391 (413)
114 PRK06645 DNA polymerase III su 99.4 2.9E-12 6.3E-17 153.8 20.4 187 897-1120 17-236 (507)
115 PRK08691 DNA polymerase III su 99.4 2.2E-12 4.9E-17 157.5 19.6 186 898-1120 13-227 (709)
116 PRK04195 replication factor C 99.4 3E-12 6.5E-17 153.9 20.5 183 897-1110 10-200 (482)
117 PRK14964 DNA polymerase III su 99.4 2.6E-12 5.6E-17 153.3 19.5 186 898-1120 10-224 (491)
118 PRK13342 recombination factor 99.4 3.4E-12 7.3E-17 150.6 19.7 180 898-1118 9-201 (413)
119 PRK07940 DNA polymerase III su 99.4 3.3E-12 7.2E-17 149.4 19.4 191 899-1114 3-215 (394)
120 PRK14951 DNA polymerase III su 99.4 4.8E-12 1E-16 154.7 19.8 184 898-1118 13-230 (618)
121 KOG2028 ATPase related to the 99.4 6.4E-12 1.4E-16 140.4 18.8 175 898-1113 135-337 (554)
122 PRK14957 DNA polymerase III su 99.4 7.1E-12 1.5E-16 151.4 20.7 184 898-1118 13-225 (546)
123 PF05673 DUF815: Protein of un 99.4 8.1E-12 1.8E-16 135.9 19.0 190 897-1116 23-244 (249)
124 PRK14969 DNA polymerase III su 99.4 4.3E-12 9.2E-17 153.8 18.7 185 898-1119 13-226 (527)
125 PRK14963 DNA polymerase III su 99.4 8.2E-12 1.8E-16 150.3 20.7 186 897-1119 10-223 (504)
126 PRK07764 DNA polymerase III su 99.4 6E-12 1.3E-16 158.4 20.3 187 897-1116 11-224 (824)
127 PRK14952 DNA polymerase III su 99.4 1.2E-11 2.6E-16 150.6 21.1 185 897-1118 9-224 (584)
128 PRK05563 DNA polymerase III su 99.4 1E-11 2.2E-16 151.5 20.4 185 897-1118 12-225 (559)
129 PRK14959 DNA polymerase III su 99.4 1.1E-11 2.3E-16 150.9 19.8 182 897-1115 12-222 (624)
130 PRK10787 DNA-binding ATP-depen 99.4 8.4E-12 1.8E-16 157.0 19.1 208 902-1128 323-562 (784)
131 PRK05896 DNA polymerase III su 99.4 1.5E-11 3.3E-16 148.9 19.7 184 897-1117 12-224 (605)
132 PRK00149 dnaA chromosomal repl 99.4 5.7E-12 1.2E-16 150.3 15.7 169 937-1119 149-328 (450)
133 PRK12402 replication factor C 99.4 2.6E-11 5.7E-16 138.1 20.1 190 897-1118 11-231 (337)
134 TIGR02397 dnaX_nterm DNA polym 99.4 3.4E-11 7.5E-16 138.4 20.9 186 897-1119 10-224 (355)
135 TIGR00362 DnaA chromosomal rep 99.4 9.5E-12 2.1E-16 146.4 16.2 169 937-1119 137-316 (405)
136 KOG0989 Replication factor C, 99.3 1.2E-11 2.5E-16 136.8 15.6 180 897-1107 32-225 (346)
137 PHA02544 44 clamp loader, smal 99.3 3.4E-11 7.3E-16 136.6 19.7 156 897-1084 17-173 (316)
138 PRK07133 DNA polymerase III su 99.3 3.2E-11 7E-16 148.7 20.8 191 897-1118 14-224 (725)
139 PRK14965 DNA polymerase III su 99.3 1.9E-11 4E-16 149.8 18.7 183 898-1117 13-224 (576)
140 PF00498 FHA: FHA domain; Int 99.3 3.2E-12 7E-17 112.8 8.8 67 147-216 1-68 (68)
141 TIGR03420 DnaA_homol_Hda DnaA 99.3 6E-11 1.3E-15 127.7 20.2 187 898-1121 12-209 (226)
142 PRK06305 DNA polymerase III su 99.3 4.7E-11 1E-15 142.3 20.6 184 898-1118 14-227 (451)
143 PRK14953 DNA polymerase III su 99.3 4.5E-11 9.7E-16 143.5 20.1 186 897-1119 12-226 (486)
144 PRK06647 DNA polymerase III su 99.3 5E-11 1.1E-15 145.2 20.5 184 897-1117 12-224 (563)
145 PRK13341 recombination factor 99.3 3.3E-11 7.2E-16 150.2 19.1 181 898-1119 25-223 (725)
146 PRK14970 DNA polymerase III su 99.3 7.8E-11 1.7E-15 136.8 20.5 187 897-1118 13-214 (367)
147 TIGR02928 orc1/cdc6 family rep 99.3 1.1E-10 2.4E-15 134.7 21.4 202 901-1123 15-256 (365)
148 PRK08451 DNA polymerase III su 99.3 7.8E-11 1.7E-15 142.0 20.4 188 897-1121 10-226 (535)
149 PRK08903 DnaA regulatory inact 99.3 1.6E-10 3.4E-15 125.3 20.8 182 897-1119 14-205 (227)
150 PRK08084 DNA replication initi 99.3 2E-10 4.4E-15 125.8 21.0 186 897-1118 18-214 (235)
151 COG2812 DnaX DNA polymerase II 99.3 1.8E-11 3.8E-16 146.0 13.5 192 898-1120 13-227 (515)
152 PRK09111 DNA polymerase III su 99.3 1E-10 2.2E-15 143.3 20.3 190 898-1118 21-238 (598)
153 PRK14948 DNA polymerase III su 99.3 9.8E-11 2.1E-15 144.2 20.3 183 897-1116 12-225 (620)
154 PRK06893 DNA replication initi 99.3 5.4E-11 1.2E-15 129.8 15.9 160 937-1118 40-208 (229)
155 PRK14955 DNA polymerase III su 99.3 8E-11 1.7E-15 138.4 18.3 184 898-1118 13-233 (397)
156 PRK14954 DNA polymerase III su 99.3 2.2E-10 4.7E-15 140.6 21.9 184 897-1117 12-232 (620)
157 PRK00440 rfc replication facto 99.2 4E-10 8.7E-15 127.3 20.8 184 898-1119 14-209 (319)
158 PRK14088 dnaA chromosomal repl 99.2 4.6E-11 1E-15 142.0 13.6 167 937-1117 131-309 (440)
159 PRK00411 cdc6 cell division co 99.2 4.4E-10 9.6E-15 131.3 21.3 204 899-1123 28-264 (394)
160 PRK14950 DNA polymerase III su 99.2 3.2E-10 7E-15 139.4 19.7 184 897-1117 12-225 (585)
161 PRK08727 hypothetical protein; 99.2 1.1E-09 2.4E-14 119.9 21.8 158 937-1118 42-209 (233)
162 PRK14971 DNA polymerase III su 99.2 5.9E-10 1.3E-14 137.3 21.8 184 898-1118 14-227 (614)
163 PF00308 Bac_DnaA: Bacterial d 99.2 3.8E-10 8.3E-15 122.5 18.0 168 937-1119 35-214 (219)
164 PRK14086 dnaA chromosomal repl 99.2 1.7E-10 3.8E-15 140.0 16.8 166 937-1117 315-492 (617)
165 PRK12422 chromosomal replicati 99.2 1.8E-10 3.8E-15 137.1 15.2 167 937-1117 142-317 (445)
166 TIGR02640 gas_vesic_GvpN gas v 99.2 2E-10 4.2E-15 127.9 14.3 133 937-1084 22-198 (262)
167 PTZ00112 origin recognition co 99.2 3.5E-10 7.7E-15 138.9 17.1 197 901-1119 755-987 (1164)
168 cd00060 FHA Forkhead associate 99.2 1.2E-10 2.5E-15 109.5 9.4 96 128-226 2-101 (102)
169 cd00009 AAA The AAA+ (ATPases 99.2 4E-10 8.7E-15 109.9 13.6 121 937-1069 20-150 (151)
170 TIGR01650 PD_CobS cobaltochela 99.1 1.9E-10 4.1E-15 130.7 11.8 143 937-1085 65-234 (327)
171 PRK14087 dnaA chromosomal repl 99.1 6.1E-10 1.3E-14 132.8 16.4 170 937-1122 142-328 (450)
172 PF07724 AAA_2: AAA domain (Cd 99.1 2.1E-10 4.5E-15 120.1 10.6 115 934-1051 1-130 (171)
173 TIGR02903 spore_lon_C ATP-depe 99.1 2.7E-09 5.9E-14 131.8 22.1 200 897-1118 150-399 (615)
174 PRK05642 DNA replication initi 99.1 8.7E-10 1.9E-14 120.8 15.8 160 937-1119 46-214 (234)
175 COG2607 Predicted ATPase (AAA+ 99.1 3E-09 6.4E-14 114.6 18.9 192 897-1118 56-278 (287)
176 PHA02244 ATPase-like protein 99.1 9.2E-10 2E-14 126.6 16.1 131 937-1075 120-265 (383)
177 PRK06620 hypothetical protein; 99.1 1.3E-09 2.8E-14 118.0 16.4 144 937-1117 45-193 (214)
178 PRK09112 DNA polymerase III su 99.1 3.7E-09 8E-14 122.4 20.1 189 898-1118 20-245 (351)
179 COG1219 ClpX ATP-dependent pro 99.1 2.2E-09 4.8E-14 119.2 17.2 189 937-1125 98-371 (408)
180 KOG0991 Replication factor C, 99.1 1.2E-09 2.6E-14 116.8 13.8 182 898-1113 24-215 (333)
181 PRK05564 DNA polymerase III su 99.1 7.3E-09 1.6E-13 118.1 19.8 172 899-1107 2-185 (313)
182 PRK07471 DNA polymerase III su 99.0 5.6E-09 1.2E-13 121.5 18.7 184 897-1114 15-239 (365)
183 KOG0744 AAA+-type ATPase [Post 99.0 7.3E-10 1.6E-14 123.1 9.9 228 382-809 130-388 (423)
184 KOG0745 Putative ATP-dependent 99.0 2.9E-09 6.3E-14 122.0 14.7 189 937-1125 227-512 (564)
185 COG1220 HslU ATP-dependent pro 99.0 3E-09 6.6E-14 118.8 14.3 137 995-1133 250-411 (444)
186 PRK13407 bchI magnesium chelat 99.0 7.1E-10 1.5E-14 127.3 9.3 162 897-1084 4-216 (334)
187 CHL00081 chlI Mg-protoporyphyr 99.0 1.6E-09 3.6E-14 124.7 11.2 168 897-1084 13-232 (350)
188 PF07728 AAA_5: AAA domain (dy 99.0 3.3E-10 7.1E-15 113.3 4.9 112 938-1062 1-139 (139)
189 COG0542 clpA ATP-binding subun 99.0 3.7E-09 8E-14 130.7 15.0 196 899-1119 168-391 (786)
190 COG0714 MoxR-like ATPases [Gen 99.0 1.8E-09 3.9E-14 123.9 10.9 139 937-1084 44-203 (329)
191 TIGR00678 holB DNA polymerase 99.0 1.2E-08 2.6E-13 107.6 15.8 144 935-1105 13-184 (188)
192 COG0593 DnaA ATPase involved i 99.0 1.2E-08 2.6E-13 119.1 17.0 170 936-1120 113-293 (408)
193 smart00382 AAA ATPases associa 99.0 5.4E-09 1.2E-13 100.7 11.9 127 937-1071 3-147 (148)
194 KOG1969 DNA replication checkp 99.0 1E-08 2.3E-13 123.5 16.7 159 937-1111 327-509 (877)
195 PF00004 AAA: ATPase family as 99.0 3.6E-09 7.8E-14 103.4 10.6 63 641-706 44-118 (132)
196 PRK07399 DNA polymerase III su 98.9 1E-08 2.3E-13 117.1 15.4 180 899-1111 2-220 (314)
197 COG3829 RocR Transcriptional r 98.9 3.3E-09 7.1E-14 125.4 11.0 202 897-1119 241-477 (560)
198 PRK04132 replication factor C 98.9 1.1E-08 2.4E-13 128.8 16.3 162 933-1118 561-736 (846)
199 PRK05707 DNA polymerase III su 98.9 2.4E-08 5.2E-13 114.7 17.7 152 934-1108 20-199 (328)
200 PRK11331 5-methylcytosine-spec 98.9 1.4E-08 3E-13 119.7 14.9 122 937-1070 195-357 (459)
201 TIGR03354 VI_FHA type VI secre 98.9 2.6E-09 5.7E-14 125.2 8.2 82 138-223 17-102 (396)
202 PRK09087 hypothetical protein; 98.9 3.1E-08 6.7E-13 108.2 15.9 148 937-1116 45-198 (226)
203 COG1474 CDC6 Cdc6-related prot 98.9 6.8E-08 1.5E-12 112.5 19.7 200 902-1125 18-249 (366)
204 COG0470 HolB ATPase involved i 98.9 9.3E-09 2E-13 116.3 12.1 146 902-1078 2-175 (325)
205 TIGR02030 BchI-ChlI magnesium 98.9 3.2E-08 6.9E-13 114.0 16.0 155 900-1083 3-218 (337)
206 COG1224 TIP49 DNA helicase TIP 98.9 7.1E-08 1.5E-12 108.8 17.9 72 1051-1123 342-414 (450)
207 TIGR02974 phageshock_pspF psp 98.8 2E-08 4.4E-13 115.5 13.4 169 937-1121 23-233 (329)
208 COG1221 PspF Transcriptional r 98.8 9.7E-09 2.1E-13 119.6 10.5 203 897-1122 74-310 (403)
209 COG2204 AtoC Response regulato 98.8 1.4E-08 3E-13 120.1 11.9 207 899-1126 139-379 (464)
210 PRK08058 DNA polymerase III su 98.8 9.5E-08 2.1E-12 110.0 18.5 148 899-1081 3-179 (329)
211 TIGR02442 Cob-chelat-sub cobal 98.8 1E-08 2.2E-13 127.3 10.4 156 900-1084 3-214 (633)
212 PF01078 Mg_chelatase: Magnesi 98.8 2E-09 4.2E-14 115.2 3.5 45 900-960 2-46 (206)
213 PRK15424 propionate catabolism 98.8 2.7E-08 5.8E-13 120.8 13.3 195 898-1120 216-464 (538)
214 PF06068 TIP49: TIP49 C-termin 98.8 4.9E-08 1.1E-12 111.7 14.3 105 995-1117 278-395 (398)
215 COG3604 FhlA Transcriptional r 98.8 2.4E-08 5.2E-13 116.9 11.9 202 897-1121 219-456 (550)
216 TIGR01817 nifA Nif-specific re 98.8 2.3E-08 4.9E-13 122.1 12.0 197 897-1121 192-428 (534)
217 PRK05022 anaerobic nitric oxid 98.8 4.1E-08 8.9E-13 119.2 14.1 197 899-1123 185-422 (509)
218 PF07726 AAA_3: ATPase family 98.8 2.5E-09 5.4E-14 106.3 2.7 113 938-1062 1-129 (131)
219 TIGR02329 propionate_PrpR prop 98.8 3.5E-08 7.5E-13 119.8 13.1 195 898-1120 209-449 (526)
220 PF05621 TniB: Bacterial TniB 98.8 1.9E-07 4.2E-12 105.0 17.8 199 906-1126 42-274 (302)
221 PRK11608 pspF phage shock prot 98.8 5.5E-08 1.2E-12 111.8 13.5 193 900-1120 5-239 (326)
222 KOG2035 Replication factor C, 98.8 2.5E-07 5.4E-12 101.6 17.4 182 898-1110 10-226 (351)
223 PRK15429 formate hydrogenlyase 98.7 1.3E-07 2.8E-12 118.8 17.1 196 898-1121 373-609 (686)
224 PRK10820 DNA-binding transcrip 98.7 6.4E-08 1.4E-12 117.8 13.4 196 897-1120 200-436 (520)
225 PRK06871 DNA polymerase III su 98.7 4.1E-07 8.9E-12 104.4 18.8 168 906-1107 7-198 (325)
226 KOG0742 AAA+-type ATPase [Post 98.7 9.2E-08 2E-12 109.0 12.2 92 642-778 430-530 (630)
227 PRK11388 DNA-binding transcrip 98.7 1.9E-07 4.1E-12 116.5 16.1 195 898-1120 322-553 (638)
228 TIGR03015 pepcterm_ATPase puta 98.7 8.5E-07 1.9E-11 98.1 19.2 173 937-1123 44-248 (269)
229 TIGR00368 Mg chelatase-related 98.7 2.1E-07 4.5E-12 112.5 14.4 146 898-1074 189-394 (499)
230 PRK07993 DNA polymerase III su 98.7 7.7E-07 1.7E-11 102.7 18.3 156 934-1110 22-202 (334)
231 smart00350 MCM minichromosome 98.6 5.4E-08 1.2E-12 118.2 9.2 175 902-1086 204-402 (509)
232 COG1239 ChlI Mg-chelatase subu 98.6 2.4E-07 5.1E-12 107.5 13.8 169 898-1086 14-234 (423)
233 PRK08769 DNA polymerase III su 98.6 7.9E-07 1.7E-11 101.8 17.9 171 906-1111 9-207 (319)
234 TIGR00764 lon_rel lon-related 98.6 3.6E-07 7.8E-12 113.0 16.1 51 897-963 14-64 (608)
235 TIGR00602 rad24 checkpoint pro 98.6 6.2E-07 1.3E-11 110.7 18.0 192 897-1110 80-321 (637)
236 PF13177 DNA_pol3_delta2: DNA 98.6 2.8E-07 6E-12 95.7 12.3 134 905-1071 1-161 (162)
237 TIGR02031 BchD-ChlD magnesium 98.6 3.5E-07 7.7E-12 112.8 14.3 137 936-1084 16-174 (589)
238 PRK06090 DNA polymerase III su 98.6 2E-06 4.3E-11 98.6 19.3 164 905-1108 7-197 (319)
239 PRK06964 DNA polymerase III su 98.6 8.6E-07 1.9E-11 102.4 16.2 152 934-1109 19-222 (342)
240 PRK13531 regulatory ATPase Rav 98.6 1.7E-07 3.7E-12 111.5 10.6 152 903-1083 22-193 (498)
241 PF00158 Sigma54_activat: Sigm 98.6 9.2E-08 2E-12 100.0 6.9 111 937-1062 23-162 (168)
242 PRK08116 hypothetical protein; 98.5 3.7E-07 8E-12 102.3 11.1 128 937-1081 115-257 (268)
243 smart00240 FHA Forkhead associ 98.5 1.2E-07 2.5E-12 79.2 5.3 50 147-199 1-52 (52)
244 TIGR02915 PEP_resp_reg putativ 98.5 5.8E-07 1.3E-11 107.0 12.5 169 937-1121 163-372 (445)
245 PRK12377 putative replication 98.5 9.5E-07 2.1E-11 97.9 12.9 111 883-1007 56-175 (248)
246 TIGR02881 spore_V_K stage V sp 98.5 9.4E-07 2E-11 98.4 12.7 84 657-778 105-193 (261)
247 PTZ00111 DNA replication licen 98.5 4.6E-07 9.9E-12 114.1 10.6 183 881-1085 439-658 (915)
248 CHL00181 cbbX CbbX; Provisiona 98.5 1.5E-06 3.3E-11 98.3 13.4 84 657-778 122-211 (287)
249 KOG2227 Pre-initiation complex 98.4 5.6E-06 1.2E-10 96.8 17.6 189 902-1114 151-369 (529)
250 KOG1514 Origin recognition com 98.4 2.4E-06 5.1E-11 103.6 14.9 176 938-1126 424-633 (767)
251 PRK07952 DNA replication prote 98.4 3.1E-06 6.7E-11 93.7 14.6 111 883-1007 54-174 (244)
252 smart00763 AAA_PrkA PrkA AAA d 98.4 5.2E-06 1.1E-10 96.0 16.2 62 900-969 49-118 (361)
253 PRK10923 glnG nitrogen regulat 98.4 2E-06 4.4E-11 103.2 13.4 169 937-1121 162-371 (469)
254 KOG0990 Replication factor C, 98.4 1.1E-06 2.4E-11 98.5 10.0 159 897-1089 37-208 (360)
255 PF03215 Rad17: Rad17 cell cyc 98.4 8.5E-06 1.8E-10 99.0 18.2 200 898-1122 16-269 (519)
256 COG1716 FOG: FHA domain [Signa 98.4 1.1E-06 2.4E-11 92.6 9.4 76 139-220 83-159 (191)
257 PLN02927 antheraxanthin epoxid 98.4 7.8E-07 1.7E-11 110.5 9.5 89 136-228 545-647 (668)
258 PF01637 Arch_ATPase: Archaeal 98.4 1.8E-06 4E-11 92.1 10.5 164 937-1111 21-232 (234)
259 COG0606 Predicted ATPase with 98.3 3.5E-07 7.6E-12 107.4 4.7 144 897-1075 175-383 (490)
260 COG1219 ClpX ATP-dependent pro 98.3 1.6E-06 3.4E-11 97.1 8.7 86 381-470 47-133 (408)
261 PRK11361 acetoacetate metaboli 98.3 8.1E-06 1.8E-10 97.4 15.2 169 937-1121 167-376 (457)
262 PRK08699 DNA polymerase III su 98.3 4.5E-06 9.8E-11 96.1 11.9 131 934-1082 19-183 (325)
263 KOG1942 DNA helicase, TBP-inte 98.3 1.9E-05 4.2E-10 87.4 15.5 52 1051-1103 348-400 (456)
264 PRK15115 response regulator Gl 98.3 5.5E-06 1.2E-10 98.7 12.3 165 937-1120 158-366 (444)
265 PRK08181 transposase; Validate 98.2 4.6E-06 9.9E-11 93.6 10.4 70 937-1008 107-180 (269)
266 PRK05342 clpX ATP-dependent pr 98.2 5.1E-06 1.1E-10 98.4 10.6 84 383-470 59-144 (412)
267 KOG2680 DNA helicase TIP49, TB 98.2 2.3E-05 4.9E-10 87.1 14.6 113 995-1125 288-413 (454)
268 PRK09862 putative ATP-dependen 98.2 3.4E-06 7.3E-11 101.9 8.8 145 899-1074 189-391 (506)
269 PRK13765 ATP-dependent proteas 98.2 1.5E-05 3.3E-10 98.8 14.6 49 897-961 27-75 (637)
270 TIGR00763 lon ATP-dependent pr 98.2 3.2E-05 7E-10 98.7 17.7 55 402-467 326-380 (775)
271 PF13173 AAA_14: AAA domain 98.2 7.5E-06 1.6E-10 81.4 9.3 118 937-1075 3-126 (128)
272 PRK06835 DNA replication prote 98.1 7.2E-06 1.6E-10 94.5 9.9 69 937-1007 184-258 (329)
273 TIGR02880 cbbX_cfxQ probable R 98.1 9.6E-06 2.1E-10 91.7 10.6 84 657-778 121-210 (284)
274 PF14532 Sigma54_activ_2: Sigm 98.1 5.2E-06 1.1E-10 83.6 7.5 105 937-1071 22-136 (138)
275 TIGR01818 ntrC nitrogen regula 98.1 1.2E-05 2.6E-10 96.3 11.4 172 937-1121 158-367 (463)
276 PRK08939 primosomal protein Dn 98.1 9.6E-06 2.1E-10 92.7 10.0 70 936-1007 156-229 (306)
277 PF13401 AAA_22: AAA domain; P 98.1 1.4E-05 3E-10 78.5 9.2 98 937-1049 5-126 (131)
278 COG3456 Predicted component of 98.1 3.8E-06 8.3E-11 96.9 6.0 74 144-226 25-101 (430)
279 PRK10365 transcriptional regul 98.1 1.5E-05 3.3E-10 94.6 10.7 172 937-1121 163-372 (441)
280 PRK06526 transposase; Provisio 98.0 7.9E-06 1.7E-10 91.0 7.0 69 937-1007 99-171 (254)
281 PF01695 IstB_IS21: IstB-like 98.0 8.3E-06 1.8E-10 86.1 6.7 69 937-1007 48-120 (178)
282 COG3283 TyrR Transcriptional r 98.0 6.1E-05 1.3E-09 85.6 13.3 166 938-1119 229-430 (511)
283 TIGR00382 clpX endopeptidase C 98.0 4.9E-05 1.1E-09 90.0 13.0 83 383-469 65-151 (413)
284 COG1484 DnaC DNA replication p 98.0 1E-05 2.2E-10 90.2 6.7 69 937-1007 106-179 (254)
285 PRK05917 DNA polymerase III su 98.0 9.2E-05 2E-09 83.8 14.1 120 935-1071 18-154 (290)
286 PRK13406 bchD magnesium chelat 98.0 2.2E-05 4.8E-10 96.7 9.6 125 936-1075 25-173 (584)
287 KOG0478 DNA replication licens 97.9 4.6E-05 1E-09 92.3 11.2 189 879-1084 416-626 (804)
288 PRK00080 ruvB Holliday junctio 97.9 0.00015 3.2E-09 83.5 14.5 59 392-464 23-81 (328)
289 PRK07276 DNA polymerase III su 97.9 0.0005 1.1E-08 78.1 18.3 154 934-1114 22-198 (290)
290 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00014 3.1E-09 80.0 13.6 131 937-1080 33-176 (231)
291 PRK09183 transposase/IS protei 97.9 3.4E-05 7.3E-10 86.2 8.8 70 937-1007 103-176 (259)
292 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00043 9.4E-09 82.7 18.2 204 898-1121 79-320 (634)
293 PRK06921 hypothetical protein; 97.9 3.6E-05 7.8E-10 86.4 8.9 67 937-1006 118-188 (266)
294 PF12775 AAA_7: P-loop contain 97.9 2.9E-05 6.2E-10 87.4 8.1 139 937-1086 34-195 (272)
295 PF05729 NACHT: NACHT domain 97.9 0.00014 3E-09 73.7 12.2 140 938-1086 2-165 (166)
296 COG1241 MCM2 Predicted ATPase 97.9 3E-05 6.6E-10 95.9 8.6 175 902-1086 287-485 (682)
297 KOG2170 ATPase of the AAA+ sup 97.9 0.00017 3.8E-09 80.8 13.6 185 903-1103 84-320 (344)
298 cd01120 RecA-like_NTPases RecA 97.9 9.3E-05 2E-09 74.3 10.6 71 939-1009 2-99 (165)
299 KOG0482 DNA replication licens 97.8 8.5E-05 1.8E-09 87.3 10.6 169 902-1084 343-539 (721)
300 COG2256 MGS1 ATPase related to 97.8 0.00012 2.7E-09 84.7 11.3 86 643-775 89-175 (436)
301 PRK07132 DNA polymerase III su 97.8 0.00078 1.7E-08 76.9 17.8 141 937-1104 19-177 (299)
302 PF00931 NB-ARC: NB-ARC domain 97.8 0.00065 1.4E-08 75.8 16.4 158 935-1114 18-203 (287)
303 TIGR00635 ruvB Holliday juncti 97.7 0.00025 5.4E-09 80.4 12.7 60 392-465 2-61 (305)
304 PRK05818 DNA polymerase III su 97.7 0.00057 1.2E-08 76.2 14.6 121 934-1071 5-147 (261)
305 KOG2228 Origin recognition com 97.7 0.00021 4.5E-09 81.2 10.8 160 903-1084 26-219 (408)
306 PF00493 MCM: MCM2/3/5 family 97.7 4.1E-06 8.9E-11 96.7 -3.0 176 902-1087 25-224 (331)
307 KOG1881 Anion exchanger adapto 97.7 8E-05 1.7E-09 90.5 7.7 88 142-230 173-269 (793)
308 COG3284 AcoR Transcriptional a 97.6 0.00012 2.7E-09 88.8 8.6 175 937-1120 337-539 (606)
309 COG1618 Predicted nucleotide k 97.6 0.0009 2E-08 69.3 13.3 24 937-960 6-29 (179)
310 KOG0480 DNA replication licens 97.6 0.00026 5.6E-09 85.5 10.5 216 879-1118 332-571 (764)
311 PF00910 RNA_helicase: RNA hel 97.6 0.00017 3.6E-09 69.8 7.3 23 939-961 1-23 (107)
312 COG5271 MDN1 AAA ATPase contai 97.6 0.00029 6.3E-09 90.9 11.0 135 937-1085 1544-1704(4600)
313 PRK14962 DNA polymerase III su 97.5 0.00084 1.8E-08 81.2 14.1 74 657-777 117-190 (472)
314 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00075 1.6E-08 79.0 12.4 102 933-1051 59-168 (362)
315 PF05496 RuvB_N: Holliday junc 97.5 0.00018 4E-09 78.4 6.4 31 434-466 52-82 (233)
316 PF05673 DUF815: Protein of un 97.5 0.0028 6.1E-08 70.1 15.5 109 643-777 94-208 (249)
317 PRK13342 recombination factor 97.4 0.0014 3E-08 78.2 13.6 76 656-778 91-166 (413)
318 TIGR01618 phage_P_loop phage n 97.4 0.00015 3.2E-09 79.3 4.7 71 937-1009 13-95 (220)
319 TIGR02237 recomb_radB DNA repa 97.4 0.00063 1.4E-08 72.9 9.4 74 936-1009 12-111 (209)
320 PHA00729 NTP-binding motif con 97.4 0.00054 1.2E-08 75.0 8.7 28 937-964 18-45 (226)
321 PHA02544 44 clamp loader, smal 97.4 0.002 4.2E-08 73.5 13.6 76 657-778 100-175 (316)
322 PRK00149 dnaA chromosomal repl 97.4 0.00095 2.1E-08 80.3 11.4 79 658-778 212-295 (450)
323 cd01124 KaiC KaiC is a circadi 97.3 0.0011 2.3E-08 69.3 10.3 71 939-1009 2-109 (187)
324 KOG1968 Replication factor C, 97.3 0.00064 1.4E-08 86.8 9.8 163 939-1120 360-535 (871)
325 COG3267 ExeA Type II secretory 97.3 0.0067 1.5E-07 67.2 16.3 174 938-1123 53-255 (269)
326 PLN03210 Resistant to P. syrin 97.3 0.0033 7.1E-08 84.1 16.7 172 899-1106 182-389 (1153)
327 PF14516 AAA_35: AAA-like doma 97.3 0.0029 6.2E-08 73.3 14.1 170 935-1118 30-244 (331)
328 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0016 3.4E-08 73.0 11.4 36 431-468 20-55 (262)
329 TIGR02928 orc1/cdc6 family rep 97.2 0.0067 1.4E-07 70.5 16.1 94 642-777 116-213 (365)
330 TIGR00362 DnaA chromosomal rep 97.2 0.0025 5.5E-08 75.6 12.8 78 659-778 201-283 (405)
331 PRK07261 topology modulation p 97.2 0.0026 5.7E-08 66.7 11.4 102 938-1086 2-103 (171)
332 PF13207 AAA_17: AAA domain; P 97.2 0.00034 7.4E-09 68.0 4.1 31 939-969 2-32 (121)
333 COG4650 RtcR Sigma54-dependent 97.2 0.00062 1.3E-08 75.7 6.1 71 938-1008 210-295 (531)
334 KOG1882 Transcriptional regula 97.1 0.00098 2.1E-08 72.0 7.1 104 117-220 161-280 (293)
335 PRK04195 replication factor C 97.1 0.0077 1.7E-07 73.3 15.4 56 401-469 19-74 (482)
336 cd01121 Sms Sms (bacterial rad 97.1 0.003 6.6E-08 74.3 11.3 98 935-1032 81-197 (372)
337 PRK08118 topology modulation p 97.1 0.0013 2.8E-08 68.8 7.4 33 937-969 2-34 (167)
338 KOG1051 Chaperone HSP104 and r 97.1 0.0041 8.9E-08 79.3 13.1 139 937-1086 209-365 (898)
339 PRK06645 DNA polymerase III su 97.0 0.0059 1.3E-07 74.5 13.6 74 658-778 129-202 (507)
340 KOG0477 DNA replication licens 97.0 0.00068 1.5E-08 81.6 5.4 165 881-1068 438-629 (854)
341 PF05707 Zot: Zonular occluden 97.0 0.00092 2E-08 71.4 5.9 123 939-1071 3-146 (193)
342 PRK11823 DNA repair protein Ra 97.0 0.0034 7.4E-08 75.6 11.3 98 935-1032 79-195 (446)
343 TIGR00390 hslU ATP-dependent p 97.0 0.00092 2E-08 79.0 5.7 82 385-471 2-84 (441)
344 PRK13949 shikimate kinase; Pro 97.0 0.0057 1.2E-07 64.1 11.0 32 937-968 2-33 (169)
345 PRK10787 DNA-binding ATP-depen 96.9 0.0098 2.1E-07 76.2 15.1 34 431-466 348-381 (784)
346 PRK07764 DNA polymerase III su 96.9 0.012 2.7E-07 75.5 15.9 75 657-778 120-194 (824)
347 PF03266 NTPase_1: NTPase; In 96.9 0.00078 1.7E-08 70.7 4.2 27 938-964 1-30 (168)
348 PRK09361 radB DNA repair and r 96.9 0.0036 7.8E-08 68.0 9.5 34 937-970 24-60 (225)
349 COG5271 MDN1 AAA ATPase contai 96.9 0.0022 4.8E-08 83.3 8.5 136 938-1084 890-1047(4600)
350 PRK13341 recombination factor 96.9 0.0063 1.4E-07 77.2 12.7 74 657-777 109-182 (725)
351 COG1373 Predicted ATPase (AAA+ 96.9 0.012 2.7E-07 69.8 14.4 133 938-1090 39-186 (398)
352 PRK14088 dnaA chromosomal repl 96.9 0.0074 1.6E-07 72.6 12.5 79 657-777 194-277 (440)
353 PRK00131 aroK shikimate kinase 96.8 0.0012 2.5E-08 68.0 4.7 33 936-968 4-36 (175)
354 KOG0481 DNA replication licens 96.8 0.0029 6.2E-08 75.0 8.2 160 902-1071 332-514 (729)
355 KOG0479 DNA replication licens 96.8 0.0041 8.9E-08 74.7 9.4 171 902-1084 302-498 (818)
356 PRK15455 PrkA family serine pr 96.8 0.0017 3.6E-08 79.2 6.2 63 899-969 74-137 (644)
357 TIGR02012 tigrfam_recA protein 96.8 0.0061 1.3E-07 70.3 10.5 74 937-1010 56-148 (321)
358 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0047 1E-07 69.4 9.4 93 898-1005 57-159 (264)
359 PRK04841 transcriptional regul 96.8 0.036 7.8E-07 71.9 18.6 159 937-1114 33-226 (903)
360 PRK08533 flagellar accessory p 96.8 0.01 2.2E-07 65.4 11.6 74 935-1008 23-130 (230)
361 PHA02624 large T antigen; Prov 96.8 0.0011 2.3E-08 81.2 4.2 119 937-1070 432-561 (647)
362 PRK14974 cell division protein 96.7 0.02 4.4E-07 66.6 14.3 72 936-1007 140-234 (336)
363 PRK12724 flagellar biosynthesi 96.7 0.026 5.5E-07 67.3 15.3 111 937-1057 224-352 (432)
364 PHA02774 E1; Provisional 96.7 0.018 3.9E-07 70.6 14.2 130 937-1093 435-590 (613)
365 cd01131 PilT Pilus retraction 96.7 0.0033 7.1E-08 67.5 7.2 68 938-1005 3-84 (198)
366 PRK13695 putative NTPase; Prov 96.7 0.0088 1.9E-07 62.5 10.3 23 938-960 2-24 (174)
367 PF06309 Torsin: Torsin; Inte 96.7 0.0057 1.2E-07 61.3 8.0 59 902-967 26-89 (127)
368 PRK14961 DNA polymerase III su 96.7 0.025 5.5E-07 66.4 14.7 75 657-778 119-193 (363)
369 PRK04296 thymidine kinase; Pro 96.7 0.016 3.4E-07 61.9 11.9 69 938-1007 4-90 (190)
370 COG3854 SpoIIIAA ncharacterize 96.7 0.0097 2.1E-07 65.0 10.1 71 937-1007 138-230 (308)
371 cd00983 recA RecA is a bacter 96.7 0.008 1.7E-07 69.4 10.2 74 937-1010 56-148 (325)
372 PF13671 AAA_33: AAA domain; P 96.7 0.0034 7.3E-08 62.7 6.4 32 939-972 2-33 (143)
373 PRK14949 DNA polymerase III su 96.7 0.024 5.2E-07 72.6 15.2 42 657-701 119-160 (944)
374 KOG2543 Origin recognition com 96.7 0.014 3E-07 67.8 11.8 59 902-971 7-65 (438)
375 PRK00411 cdc6 cell division co 96.6 0.026 5.7E-07 66.3 14.5 94 642-777 125-221 (394)
376 PRK00771 signal recognition pa 96.6 0.025 5.3E-07 68.0 14.3 37 935-971 94-133 (437)
377 PF13604 AAA_30: AAA domain; P 96.6 0.0069 1.5E-07 65.0 8.5 99 937-1051 19-133 (196)
378 PRK11331 5-methylcytosine-spec 96.6 0.015 3.2E-07 69.8 11.6 26 432-459 194-219 (459)
379 cd01394 radB RadB. The archaea 96.6 0.011 2.3E-07 63.9 9.8 34 937-970 20-56 (218)
380 PRK13947 shikimate kinase; Pro 96.5 0.0024 5.2E-08 66.1 4.5 31 938-968 3-33 (171)
381 PRK07003 DNA polymerase III su 96.5 0.033 7.3E-07 70.2 14.9 74 657-777 119-192 (830)
382 PRK12323 DNA polymerase III su 96.5 0.02 4.3E-07 71.2 12.8 75 656-777 123-197 (700)
383 TIGR02858 spore_III_AA stage I 96.5 0.0053 1.1E-07 69.3 7.3 69 937-1005 112-204 (270)
384 PF13191 AAA_16: AAA ATPase do 96.5 0.0063 1.4E-07 63.0 7.4 59 903-972 2-63 (185)
385 KOG0745 Putative ATP-dependent 96.5 0.0075 1.6E-07 70.7 8.4 35 434-470 228-262 (564)
386 PRK14086 dnaA chromosomal repl 96.5 0.012 2.6E-07 72.9 10.8 78 658-777 378-460 (617)
387 PRK03839 putative kinase; Prov 96.5 0.0024 5.1E-08 67.0 4.1 31 938-968 2-32 (180)
388 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.033 7.1E-07 60.1 13.0 53 390-459 11-63 (226)
389 COG1485 Predicted ATPase [Gene 96.5 0.016 3.4E-07 66.9 10.8 101 933-1050 62-170 (367)
390 PRK12723 flagellar biosynthesi 96.5 0.018 3.9E-07 68.2 11.7 159 937-1109 175-374 (388)
391 PRK14964 DNA polymerase III su 96.5 0.058 1.3E-06 65.7 16.2 75 657-778 116-190 (491)
392 PRK14963 DNA polymerase III su 96.4 0.037 8.1E-07 67.8 14.5 76 656-778 115-190 (504)
393 cd00464 SK Shikimate kinase (S 96.4 0.0029 6.3E-08 63.9 4.3 31 938-968 1-31 (154)
394 TIGR02397 dnaX_nterm DNA polym 96.4 0.042 9.2E-07 63.5 14.3 74 658-778 118-191 (355)
395 PRK09376 rho transcription ter 96.4 0.0061 1.3E-07 71.7 7.2 72 937-1008 170-269 (416)
396 PRK05800 cobU adenosylcobinami 96.4 0.017 3.7E-07 60.8 9.9 71 938-1009 3-90 (170)
397 PRK12402 replication factor C 96.4 0.03 6.4E-07 64.2 12.8 49 392-459 13-61 (337)
398 cd03283 ABC_MutS-like MutS-lik 96.4 0.022 4.8E-07 61.4 10.7 69 937-1005 26-115 (199)
399 PRK10536 hypothetical protein; 96.3 0.02 4.3E-07 64.1 10.4 22 938-959 76-97 (262)
400 TIGR00416 sms DNA repair prote 96.3 0.021 4.5E-07 69.1 11.4 76 934-1009 92-184 (454)
401 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.026 5.6E-07 62.3 11.3 36 934-969 19-57 (237)
402 COG4088 Predicted nucleotide k 96.3 0.014 3E-07 62.9 8.5 23 938-960 3-25 (261)
403 PRK14960 DNA polymerase III su 96.3 0.031 6.7E-07 69.7 12.8 75 657-778 118-192 (702)
404 PRK06581 DNA polymerase III su 96.3 0.14 3E-06 57.0 16.4 132 937-1087 16-164 (263)
405 PF06745 KaiC: KaiC; InterPro 96.3 0.026 5.6E-07 61.4 11.0 125 935-1069 18-184 (226)
406 PRK00625 shikimate kinase; Pro 96.3 0.0038 8.3E-08 65.9 4.4 31 938-968 2-32 (173)
407 PRK05201 hslU ATP-dependent pr 96.3 0.0034 7.4E-08 74.4 4.4 67 402-471 21-87 (443)
408 PRK05563 DNA polymerase III su 96.3 0.049 1.1E-06 67.6 14.5 75 656-777 118-192 (559)
409 PRK14948 DNA polymerase III su 96.3 0.055 1.2E-06 67.8 14.8 86 642-774 105-191 (620)
410 PRK14722 flhF flagellar biosyn 96.2 0.013 2.8E-07 69.0 8.7 108 937-1058 138-266 (374)
411 TIGR01420 pilT_fam pilus retra 96.2 0.0095 2.1E-07 69.4 7.5 69 937-1005 123-205 (343)
412 KOG3347 Predicted nucleotide k 96.2 0.0039 8.4E-08 63.9 3.7 32 937-968 8-39 (176)
413 PRK14532 adenylate kinase; Pro 96.2 0.0043 9.3E-08 65.5 4.2 30 938-967 2-31 (188)
414 PRK06217 hypothetical protein; 96.2 0.0047 1E-07 65.2 4.5 31 938-968 3-33 (183)
415 cd00046 DEXDc DEAD-like helica 96.2 0.015 3.2E-07 55.9 7.6 23 938-960 2-24 (144)
416 KOG3928 Mitochondrial ribosome 96.2 0.19 4.2E-06 59.1 17.6 115 996-1115 316-458 (461)
417 KOG0743 AAA+-type ATPase [Post 96.2 0.032 6.9E-07 66.2 11.5 63 400-466 205-267 (457)
418 PF01745 IPT: Isopentenyl tran 96.2 0.012 2.6E-07 63.8 7.4 37 938-974 3-39 (233)
419 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.0044 9.6E-08 64.8 4.1 33 939-973 2-34 (183)
420 PF10236 DAP3: Mitochondrial r 96.2 0.22 4.8E-06 57.4 18.2 117 995-1112 156-308 (309)
421 cd00544 CobU Adenosylcobinamid 96.2 0.023 5E-07 59.8 9.4 70 939-1010 2-88 (169)
422 PLN03025 replication factor C 96.2 0.03 6.4E-07 64.5 11.2 75 657-778 99-173 (319)
423 PF00437 T2SE: Type II/IV secr 96.2 0.0074 1.6E-07 67.5 6.0 97 897-1005 100-207 (270)
424 PF00448 SRP54: SRP54-type pro 96.1 0.01 2.2E-07 63.9 6.6 128 937-1076 2-155 (196)
425 TIGR02533 type_II_gspE general 96.1 0.019 4E-07 70.0 9.7 94 897-1005 218-321 (486)
426 PRK06067 flagellar accessory p 96.1 0.039 8.4E-07 60.5 11.3 74 935-1008 24-133 (234)
427 PRK09354 recA recombinase A; P 96.1 0.033 7.1E-07 65.0 11.1 73 937-1009 61-152 (349)
428 KOG2028 ATPase related to the 96.1 0.011 2.4E-07 67.9 7.0 107 580-701 148-261 (554)
429 PRK06762 hypothetical protein; 96.1 0.015 3.3E-07 60.0 7.4 37 937-973 3-39 (166)
430 cd02020 CMPK Cytidine monophos 96.1 0.0055 1.2E-07 61.2 4.1 30 939-968 2-31 (147)
431 COG0563 Adk Adenylate kinase a 96.1 0.0064 1.4E-07 64.5 4.6 33 938-972 2-34 (178)
432 PRK10436 hypothetical protein; 96.1 0.022 4.7E-07 68.9 9.6 94 897-1005 194-297 (462)
433 cd01393 recA_like RecA is a b 96.1 0.039 8.5E-07 59.7 10.8 37 935-971 18-63 (226)
434 cd02021 GntK Gluconate kinase 96.1 0.0056 1.2E-07 62.1 4.0 28 939-966 2-29 (150)
435 TIGR02688 conserved hypothetic 96.1 0.022 4.7E-07 67.7 9.2 59 937-1007 210-272 (449)
436 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.05 1.1E-06 61.0 11.8 35 935-969 35-72 (259)
437 PRK08233 hypothetical protein; 96.0 0.055 1.2E-06 56.3 11.2 33 937-969 4-37 (182)
438 COG2804 PulE Type II secretory 96.0 0.018 3.9E-07 69.3 8.4 101 891-1006 228-338 (500)
439 PRK14531 adenylate kinase; Pro 96.0 0.0069 1.5E-07 64.0 4.6 31 937-967 3-33 (183)
440 cd01428 ADK Adenylate kinase ( 96.0 0.006 1.3E-07 64.2 4.1 29 939-967 2-30 (194)
441 PRK13948 shikimate kinase; Pro 96.0 0.0075 1.6E-07 64.2 4.8 35 934-968 8-42 (182)
442 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.059 1.3E-06 58.7 11.8 22 937-958 30-51 (213)
443 PF13479 AAA_24: AAA domain 96.0 0.023 5.1E-07 61.7 8.6 68 937-1008 4-81 (213)
444 PRK11889 flhF flagellar biosyn 96.0 0.052 1.1E-06 64.2 11.8 71 937-1007 242-332 (436)
445 KOG2383 Predicted ATPase [Gene 96.0 0.051 1.1E-06 63.6 11.4 28 933-960 111-138 (467)
446 cd01122 GP4d_helicase GP4d_hel 96.0 0.06 1.3E-06 60.1 12.0 35 935-969 29-67 (271)
447 PRK05973 replicative DNA helic 96.0 0.054 1.2E-06 60.1 11.4 36 934-969 62-100 (237)
448 PRK14951 DNA polymerase III su 95.9 0.078 1.7E-06 66.3 13.9 72 659-777 126-197 (618)
449 TIGR01425 SRP54_euk signal rec 95.9 0.11 2.4E-06 62.4 14.5 73 935-1007 99-194 (429)
450 PRK14530 adenylate kinase; Pro 95.9 0.0074 1.6E-07 65.4 4.5 30 938-967 5-34 (215)
451 cd00984 DnaB_C DnaB helicase C 95.9 0.064 1.4E-06 58.7 11.8 36 934-969 11-50 (242)
452 PRK14965 DNA polymerase III su 95.9 0.072 1.6E-06 66.4 13.5 71 659-776 121-191 (576)
453 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.031 6.7E-07 60.9 9.2 37 935-971 18-63 (235)
454 TIGR02782 TrbB_P P-type conjug 95.9 0.016 3.5E-07 66.3 7.2 69 937-1005 133-214 (299)
455 cd00227 CPT Chloramphenicol (C 95.9 0.0073 1.6E-07 63.3 4.0 36 937-972 3-38 (175)
456 TIGR03574 selen_PSTK L-seryl-t 95.9 0.031 6.6E-07 62.0 9.0 34 939-972 2-38 (249)
457 COG0703 AroK Shikimate kinase 95.8 0.0073 1.6E-07 63.6 3.7 32 937-968 3-34 (172)
458 PRK03731 aroL shikimate kinase 95.8 0.0094 2E-07 61.8 4.5 31 938-968 4-34 (171)
459 TIGR02525 plasmid_TraJ plasmid 95.8 0.019 4.1E-07 67.7 7.5 69 937-1005 150-235 (372)
460 TIGR01313 therm_gnt_kin carboh 95.8 0.0071 1.5E-07 62.2 3.6 28 939-966 1-28 (163)
461 PF07693 KAP_NTPase: KAP famil 95.8 0.35 7.6E-06 55.2 17.7 35 935-969 19-59 (325)
462 cd01128 rho_factor Transcripti 95.8 0.021 4.6E-07 63.7 7.5 26 937-962 17-42 (249)
463 PF04665 Pox_A32: Poxvirus A32 95.8 0.16 3.5E-06 56.5 14.2 130 937-1083 14-169 (241)
464 PRK12726 flagellar biosynthesi 95.8 0.07 1.5E-06 62.9 11.8 62 906-971 180-244 (407)
465 PRK14956 DNA polymerase III su 95.8 0.032 6.9E-07 67.6 9.3 74 656-776 120-193 (484)
466 TIGR02538 type_IV_pilB type IV 95.8 0.031 6.8E-07 69.4 9.5 94 897-1005 292-395 (564)
467 PTZ00088 adenylate kinase 1; P 95.8 0.0096 2.1E-07 65.7 4.5 32 937-968 7-38 (229)
468 PRK13764 ATPase; Provisional 95.7 0.019 4.1E-07 71.3 7.3 68 937-1005 258-334 (602)
469 PRK10416 signal recognition pa 95.7 0.18 3.8E-06 58.5 14.8 73 935-1007 113-208 (318)
470 PRK06305 DNA polymerase III su 95.7 0.13 2.8E-06 62.3 14.2 74 656-776 120-193 (451)
471 PRK14958 DNA polymerase III su 95.7 0.096 2.1E-06 64.3 13.1 40 658-700 120-159 (509)
472 TIGR00064 ftsY signal recognit 95.7 0.24 5.1E-06 56.2 15.3 36 935-970 71-109 (272)
473 smart00534 MUTSac ATPase domai 95.7 0.11 2.3E-06 55.2 11.9 19 939-957 2-20 (185)
474 cd03280 ABC_MutS2 MutS2 homolo 95.7 0.093 2E-06 56.3 11.5 21 937-957 29-49 (200)
475 cd01130 VirB11-like_ATPase Typ 95.7 0.028 6E-07 59.7 7.4 69 937-1005 26-110 (186)
476 PRK14528 adenylate kinase; Pro 95.7 0.012 2.5E-07 62.7 4.5 31 937-967 2-32 (186)
477 PRK04328 hypothetical protein; 95.6 0.096 2.1E-06 58.4 11.8 35 935-969 22-59 (249)
478 cd00009 AAA The AAA+ (ATPases 95.6 0.12 2.7E-06 50.0 11.3 38 431-470 18-58 (151)
479 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.094 2E-06 57.0 11.4 35 935-969 15-52 (224)
480 PRK06547 hypothetical protein; 95.6 0.013 2.8E-07 61.8 4.5 33 936-968 15-47 (172)
481 TIGR01360 aden_kin_iso1 adenyl 95.6 0.013 2.9E-07 61.2 4.6 30 937-966 4-33 (188)
482 PRK13946 shikimate kinase; Pro 95.6 0.011 2.4E-07 62.6 4.0 33 937-969 11-43 (184)
483 PRK02496 adk adenylate kinase; 95.6 0.012 2.6E-07 61.9 4.3 30 938-967 3-32 (184)
484 cd03243 ABC_MutS_homologs The 95.6 0.098 2.1E-06 56.1 11.3 22 937-958 30-51 (202)
485 cd03115 SRP The signal recogni 95.6 0.11 2.3E-06 54.1 11.3 33 938-970 2-37 (173)
486 COG4619 ABC-type uncharacteriz 95.6 0.048 1E-06 57.3 8.3 26 935-960 28-53 (223)
487 smart00487 DEXDc DEAD-like hel 95.6 0.069 1.5E-06 54.6 9.7 24 937-960 25-49 (201)
488 PRK05057 aroK shikimate kinase 95.6 0.013 2.9E-07 61.5 4.5 33 937-969 5-37 (172)
489 PRK12422 chromosomal replicati 95.5 0.069 1.5E-06 64.5 10.9 79 658-778 203-286 (445)
490 cd02027 APSK Adenosine 5'-phos 95.5 0.034 7.3E-07 57.1 7.1 34 939-972 2-38 (149)
491 PRK14969 DNA polymerase III su 95.5 0.11 2.5E-06 63.9 12.9 41 658-701 120-160 (527)
492 PRK13900 type IV secretion sys 95.5 0.027 5.8E-07 65.5 6.9 69 937-1005 161-245 (332)
493 TIGR01351 adk adenylate kinase 95.5 0.013 2.8E-07 63.3 4.0 29 939-967 2-30 (210)
494 PF08433 KTI12: Chromatin asso 95.4 0.039 8.4E-07 62.4 7.8 68 939-1007 4-82 (270)
495 PRK00279 adk adenylate kinase; 95.4 0.015 3.2E-07 63.0 4.4 30 938-967 2-31 (215)
496 cd02019 NK Nucleoside/nucleoti 95.4 0.045 9.8E-07 48.9 6.7 30 939-968 2-32 (69)
497 PRK14955 DNA polymerase III su 95.4 0.12 2.6E-06 61.5 12.3 52 392-461 14-65 (397)
498 PRK08154 anaerobic benzoate ca 95.4 0.024 5.2E-07 65.1 6.2 35 934-968 131-165 (309)
499 PLN02200 adenylate kinase fami 95.4 0.017 3.7E-07 63.8 4.8 37 936-974 43-79 (234)
500 PRK06696 uridine kinase; Valid 95.4 0.037 8E-07 60.4 7.3 37 937-973 23-62 (223)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-66 Score=599.24 Aligned_cols=511 Identities=31% Similarity=0.472 Sum_probs=411.6
Q ss_pred CCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 001150 385 DGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1138)
Q Consensus 385 ~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1138)
...+.+|+|.+|... +.|-..|.+-+. |++||++..++.- -.+++|||.|||| |+++|||.|+|.++|++||-
T Consensus 181 ~~~~snv~f~diGG~--d~~~~el~~li~-~i~~Pe~~~~lGv--~PprGvLlHGPPG--CGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGL--DKTLAELCELII-HIKHPEVFSSLGV--RPPRGVLLHGPPG--CGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCCCCcchhhccCh--HHHHHHHHHHHH-HhcCchhHhhcCC--CCCCceeeeCCCC--ccHHHHHHHHhhhcCCceEe
Confidence 345668999999988 888888877665 6999999877643 3468999999999 99999999999999999998
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 001150 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1138)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1138)
|-...+-+|++
T Consensus 254 isApeivSGvS--------------------------------------------------------------------- 264 (802)
T KOG0733|consen 254 ISAPEIVSGVS--------------------------------------------------------------------- 264 (802)
T ss_pred ecchhhhcccC---------------------------------------------------------------------
Confidence 87644433221
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 001150 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1138)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1138)
T Consensus 265 -------------------------------------------------------------------------------- 264 (802)
T KOG0733|consen 265 -------------------------------------------------------------------------------- 264 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc----CCcchhhHHHHHHhc----C------CCc
Q 001150 625 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEK----L------PDK 690 (1138)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~----~~~~~~~~lk~~L~~----l------~g~ 690 (1138)
|| .+.-|+.||+.+.+ ..|+||||||||-+-. .+.++-..+...|.. + ..+
T Consensus 265 ----------GE--SEkkiRelF~~A~~---~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 265 ----------GE--SEKKIRELFDQAKS---NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ----------cc--cHHHHHHHHHHHhc---cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 12 34469999999999 9999999999999665 455555556666622 1 248
Q ss_pred EEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHH
Q 001150 691 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 770 (1138)
Q Consensus 691 VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ 770 (1138)
|+|||||||+|+.||+ |||.|| |+++|.++.|++.+|.+
T Consensus 330 VlVIgATnRPDslDpa-------LRRaGR----------------------------------FdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPA-------LRRAGR----------------------------------FDREICLGVPSETAREE 368 (802)
T ss_pred eEEEecCCCCcccCHH-------Hhcccc----------------------------------ccceeeecCCchHHHHH
Confidence 9999999999999999 999999 88999999999999999
Q ss_pred HHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCC-----CCCcc--
Q 001150 771 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPE-----ADPDA-- 843 (1138)
Q Consensus 771 ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~-----~~~~~-- 843 (1138)
||+++.+. +.+.-++++.+.+-.|.||.|+||.+||.++..+..+ |++..... +....
T Consensus 369 IL~~~~~~----lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAik-----------R~ld~~~~p~~~~~~~ed~~ 433 (802)
T KOG0733|consen 369 ILRIICRG----LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIK-----------RILDQSSSPLTKVPISEDSS 433 (802)
T ss_pred HHHHHHhh----CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHH-----------HHhhcccCccccCCcccccc
Confidence 99987744 6667788899999999999999999999988775443 33332211 10000
Q ss_pred -------c--ccccch-----hhhhhHhHHHHHHHhhHhhh--hcccccCCHHHHHHHHh--------cCcCCCCCCCcc
Q 001150 844 -------R--LVLSCE-----SIQYGIGIFQAIQNESKSLK--KSLKDVVTENEFEKRLL--------ADVIPPSDIGVT 899 (1138)
Q Consensus 844 -------k--l~l~~e-----dl~~al~~lq~i~~~~k~~~--~s~k~~v~~~e~e~~ll--------~~ii~~~~~~vs 899 (1138)
. +.++.. ++...+ .+.+........ ....-.+.-+||+..+- .+++. .+.++
T Consensus 434 ~~~~~~d~S~i~~~~~~~~~~~ld~v~--~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~t--VPdVt 509 (802)
T KOG0733|consen 434 NKDAEEDQSSIKITSNAERPLELDRVV--QDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFAT--VPDVT 509 (802)
T ss_pred CCCccchhhhhhcCCcccccccHHHHH--HHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccccee--cCCCC
Confidence 0 111000 111111 011111111110 00112255667776441 22222 35799
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccc
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE 979 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~ 979 (1138)
|+||+++++++.+|..+|.+|.++++.|...++..| .|||||||||||||.||+|+|++.|++|+.|.+++|+++|+|+
T Consensus 510 W~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~P-sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 510 WDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAP-SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred hhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCC-CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 999999999999999999999999999999887665 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHH
Q 001150 980 GEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI 1059 (1138)
Q Consensus 980 ~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLl 1059 (1138)
+|..++++|..|+.++||||||||||.|+++|.... .....+++|+||+.|||+.. +..|.|||+||+|+.+|++++
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiL 665 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAIL 665 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhc
Confidence 999999999999999999999999999999886654 67788999999999999865 478999999999999999999
Q ss_pred h--cCCceEEecCCCHHHHHHHHHHHHh--hCCCCCcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHhhh
Q 001150 1060 R--RLPRRLMVNLPDAPNRAKILQVILA--KEDLSPDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1138)
Q Consensus 1060 r--RFd~~I~v~lPd~eeR~eIL~~ll~--k~~l~~dvdl~~LA~~te--GySgaDL~~L~~~Aa~~ai~eiie~ek 1130 (1138)
| |||..++|++|+.++|..||+.+.+ +..+..++|+++||..+. ||||+||..||++|+..|+++-+....
T Consensus 666 RPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 666 RPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID 742 (802)
T ss_pred CCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9 9999999999999999999999999 667889999999999887 999999999999999999999887543
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-59 Score=549.17 Aligned_cols=456 Identities=31% Similarity=0.510 Sum_probs=380.8
Q ss_pred hHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCCchhhHhhh
Q 001150 403 NTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELL 482 (1138)
Q Consensus 403 ~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~~~~~~e~~ 482 (1138)
.--..+.+.+..+|.++...+.. =...++++||+|||| ++++||++|.|++.+|.|+.+....+...
T Consensus 191 ~~~~~i~e~v~~pl~~~~~~~s~--g~~~prg~Ll~gppg--~Gkt~l~~aVa~e~~a~~~~i~~peli~k--------- 257 (693)
T KOG0730|consen 191 RQLSVIRELVELPLRHPALFKSI--GIKPPRGLLLYGPPG--TGKTFLVRAVANEYGAFLFLINGPELISK--------- 257 (693)
T ss_pred HHHHHHHHHHHhhhcchhhhhhc--CCCCCCCccccCCCC--CChHHHHHHHHHHhCceeEecccHHHHHh---------
Confidence 34556788899999998875332 246788999999999 99999999999999999999987544330
Q ss_pred hcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccCCeeeEecC
Q 001150 483 KDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGS 562 (1138)
Q Consensus 483 ~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~ 562 (1138)
|-|
T Consensus 258 ----------------------------------------------------------------------------~~g- 260 (693)
T KOG0730|consen 258 ----------------------------------------------------------------------------FPG- 260 (693)
T ss_pred ----------------------------------------------------------------------------ccc-
Confidence 001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccccccCCCchhhHHHH
Q 001150 563 TSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLL 642 (1138)
Q Consensus 563 ~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~ 642 (1138)
| .+..
T Consensus 261 -------------------------------------------------------------------------E--te~~ 265 (693)
T KOG0730|consen 261 -------------------------------------------------------------------------E--TESN 265 (693)
T ss_pred -------------------------------------------------------------------------c--hHHH
Confidence 1 1224
Q ss_pred HHHHHHHHhhcccCC-CeEEEEcchhhhhcCCcch---hhHHHHHH----hcC--CCcEEEEeecccCCCccccCCCCCc
Q 001150 643 INTLFEVVFSESRSC-PFILFMKDAEKSIAGNSDS---YSTFKSRL----EKL--PDKVIVIGSHTHTDNRKEKSHPGGL 712 (1138)
Q Consensus 643 i~~L~ev~~~~~~~~-p~ILfiddi~~~l~~~~~~---~~~lk~~L----~~l--~g~VvvIGstt~~d~~d~k~~~~~~ 712 (1138)
++..|+.+.+ .+ |+||||||+|.+..++... ...+.+.| +-+ .++|+||+++++++.+||+
T Consensus 266 LR~~f~~a~k---~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~a------ 336 (693)
T KOG0730|consen 266 LRKAFAEALK---FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPA------ 336 (693)
T ss_pred HHHHHHHHhc---cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChh------
Confidence 7778888887 77 9999999999977632222 22344444 333 4899999999999999999
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchh
Q 001150 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 792 (1138)
Q Consensus 713 ~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l 792 (1138)
||| || |+++++|+.|+..+|+.|++.+..+ +....+..+.
T Consensus 337 -lRR-gR----------------------------------fd~ev~IgiP~~~~RldIl~~l~k~----~~~~~~~~l~ 376 (693)
T KOG0730|consen 337 -LRR-GR----------------------------------FDREVEIGIPGSDGRLDILRVLTKK----MNLLSDVDLE 376 (693)
T ss_pred -hhc-CC----------------------------------CcceeeecCCCchhHHHHHHHHHHh----cCCcchhhHH
Confidence 888 88 9999999999999999999998855 4444668888
Q ss_pred hHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhhhc
Q 001150 793 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKS 872 (1138)
Q Consensus 793 ~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s 872 (1138)
+.+-.++||.|+||..+|.++.+-.... +.++|..++. .+++..
T Consensus 377 ~iA~~thGyvGaDL~~l~~ea~~~~~r~---------------------------~~~~~~~A~~---~i~psa------ 420 (693)
T KOG0730|consen 377 DIAVSTHGYVGADLAALCREASLQATRR---------------------------TLEIFQEALM---GIRPSA------ 420 (693)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHhhh---------------------------hHHHHHHHHh---cCCchh------
Confidence 8899999999999999999765511110 2223333222 111110
Q ss_pred ccccCCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHH
Q 001150 873 LKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTML 952 (1138)
Q Consensus 873 ~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~L 952 (1138)
+..-+ .+.++++|+||+|++++|..|++.|.+|+++++.|.+.+. .|++|||||||||||||++
T Consensus 421 -------------~Re~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 421 -------------LREIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred -------------hhhee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHH
Confidence 11111 4456899999999999999999999999999999999875 4569999999999999999
Q ss_pred HHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhc
Q 001150 953 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1032 (1138)
Q Consensus 953 ArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ld 1032 (1138)
|+|+|++.+++|+.+.+++++++|+|++|..++++|+.|+..+|+||||||||.+.+.|..... .+..+++++||.+||
T Consensus 485 AkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmD 563 (693)
T KOG0730|consen 485 AKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMD 563 (693)
T ss_pred HHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999874433 888999999999999
Q ss_pred CCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHH
Q 001150 1033 GLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1110 (1138)
Q Consensus 1033 gl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL 1110 (1138)
|+... .+|+|||+||+|+.||++++| |||..|+|++|+.+.|.+||+.+++++.+.+++|+.+||..|+||||+||
T Consensus 564 G~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel 641 (693)
T KOG0730|consen 564 GLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEI 641 (693)
T ss_pred ccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHH
Confidence 99654 789999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001150 1111 KNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1111 ~~L~~~Aa~~ai~eiie 1127 (1138)
.++|++|+..|+++.++
T Consensus 642 ~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 642 VAVCQEAALLALRESIE 658 (693)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999875
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=9.3e-50 Score=496.81 Aligned_cols=487 Identities=28% Similarity=0.474 Sum_probs=386.1
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
-+++|+++..+ +..+..|.+.+..+|+|+++.+... ...++.|||+||+| +++++||||||++.+++++.++..
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--IEPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEecH
Confidence 46899998877 9999999999999999998764221 24567899999999 999999999999999998877753
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 001150 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1138)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1138)
.+.+
T Consensus 247 ~i~~---------------------------------------------------------------------------- 250 (733)
T TIGR01243 247 EIMS---------------------------------------------------------------------------- 250 (733)
T ss_pred HHhc----------------------------------------------------------------------------
Confidence 3322
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 001150 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1138)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1138)
+|+
T Consensus 251 ---------~~~-------------------------------------------------------------------- 253 (733)
T TIGR01243 251 ---------KYY-------------------------------------------------------------------- 253 (733)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCcc--------hhhHHHHHHhcC--CCcEEEEeecc
Q 001150 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--------SYSTFKSRLEKL--PDKVIVIGSHT 698 (1138)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~--------~~~~lk~~L~~l--~g~VvvIGstt 698 (1138)
++ ....++.+|+.+.. ..|.||||||||.+...+.. +.+.|...|+.+ .+.|+|||+||
T Consensus 254 ------g~--~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn 322 (733)
T TIGR01243 254 ------GE--SEERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN 322 (733)
T ss_pred ------cH--HHHHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC
Confidence 11 22347778888877 88999999999997753221 223344444433 47899999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 699 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 699 ~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+++..|++ |+|+|| |+..++|++|+.++|.+||+.+...
T Consensus 323 ~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 323 RPDALDPA-------LRRPGR----------------------------------FDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred ChhhcCHH-------HhCchh----------------------------------ccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 99888888 788888 8889999999999999999976543
Q ss_pred hhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCC-----C---Ccccccccch
Q 001150 779 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEA-----D---PDARLVLSCE 850 (1138)
Q Consensus 779 ~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~-----~---~~~kl~l~~e 850 (1138)
+....++.....+-.+.||.++||..+|..+... ++.+.+...... . ......++.+
T Consensus 362 ----~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~-----------al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~ 426 (733)
T TIGR01243 362 ----MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA-----------ALRRFIREGKINFEAEEIPAEVLKELKVTMK 426 (733)
T ss_pred ----CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH-----------HHHHHhhccccccccccccchhcccccccHH
Confidence 3344456666677788999999999988865442 222222211100 0 0122344555
Q ss_pred hhhhhHhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcC
Q 001150 851 SIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKG 930 (1138)
Q Consensus 851 dl~~al~~lq~i~~~~k~~~~s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~ 930 (1138)
+|..++...+ +.. . .... ...+.++|+|++|++.+++.|++.+.+++.+++.|.+.
T Consensus 427 df~~Al~~v~---ps~---------------~----~~~~--~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~ 482 (733)
T TIGR01243 427 DFMEALKMVE---PSA---------------I----REVL--VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM 482 (733)
T ss_pred HHHHHHhhcc---ccc---------------c----chhh--ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 5554443221 110 0 0000 11235789999999999999999999999999999887
Q ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccC
Q 001150 931 QLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 931 ~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~ 1010 (1138)
+.. +++++|||||||||||++|+++|++++++|+.++++++.++|+|+.+..++.+|..|+..+|+||||||||.|++.
T Consensus 483 g~~-~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~ 561 (733)
T TIGR01243 483 GIR-PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA 561 (733)
T ss_pred CCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhcc
Confidence 654 5589999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCC
Q 001150 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1138)
Q Consensus 1011 r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~ 1088 (1138)
+..........+++++|+..|+++.. ..+++||+|||+++.||++++| ||+..++|++|+.++|.+||+.++.+..
T Consensus 562 r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~ 639 (733)
T TIGR01243 562 RGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP 639 (733)
T ss_pred CCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC
Confidence 76555556778899999999999754 4689999999999999999998 9999999999999999999999999888
Q ss_pred CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1089 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1089 l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+..++++..||..|+||+|+||.++|++|++.++++.+..
T Consensus 640 ~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 640 LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679 (733)
T ss_pred CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 8889999999999999999999999999999999987653
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=443.01 Aligned_cols=409 Identities=29% Similarity=0.485 Sum_probs=323.1
Q ss_pred HHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--c---hhhHHHHHHh----c-CCCcEEEEeecccCCCccccCCCCCc
Q 001150 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNS--D---SYSTFKSRLE----K-LPDKVIVIGSHTHTDNRKEKSHPGGL 712 (1138)
Q Consensus 643 i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--~---~~~~lk~~L~----~-l~g~VvvIGstt~~d~~d~k~~~~~~ 712 (1138)
+.+.|+-+.. .+|+||||.+.|-+...+. + ....+.-.|. + -.++++|||+++..+++
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~l--------- 546 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDL--------- 546 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccC---------
Confidence 4445555555 7899999999887553111 1 1111222221 2 24689999999988752
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchh
Q 001150 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 792 (1138)
Q Consensus 713 ~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l 792 (1138)
-..+...|..+|.|+.|++++|++||+..+.. +.+..++..-
T Consensus 547 ----------------------------------p~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~----~~~n~~v~~k 588 (953)
T KOG0736|consen 547 ----------------------------------PADIQSLFLHEIEVPALSEEQRLEILQWYLNH----LPLNQDVNLK 588 (953)
T ss_pred ----------------------------------CHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc----cccchHHHHH
Confidence 23466678889999999999999999976643 4455666677
Q ss_pred hHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCC-CcccccccchhhhhhHhHHHHHHHhhHhhhh
Q 001150 793 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-PDARLVLSCESIQYGIGIFQAIQNESKSLKK 871 (1138)
Q Consensus 793 ~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~-~~~kl~l~~edl~~al~~lq~i~~~~k~~~~ 871 (1138)
..+..+.|++=.||+.+.... +.+...++.......-++...+.. ......+..++|..++..+|+-
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~---s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~--------- 656 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHS---SLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE--------- 656 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCc---hHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHh---------
Confidence 778899999999999886654 222222332222111222222211 2244567778877776644332
Q ss_pred cccccCCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHH
Q 001150 872 SLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 951 (1138)
Q Consensus 872 s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~ 951 (1138)
+.. .+-.|..+.++|+||+|++++|..+.+-|..|++++++|..+ .++..|||||||||||||.
T Consensus 657 ----------fs~----aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTL 720 (953)
T KOG0736|consen 657 ----------FSD----AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTL 720 (953)
T ss_pred ----------hhh----hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHH
Confidence 121 222344568999999999999999999999999999999876 3445799999999999999
Q ss_pred HHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchH-HHHHHHHHHHHHH
Q 001150 952 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVN 1030 (1138)
Q Consensus 952 LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~-~al~~il~~LL~~ 1030 (1138)
+|+|+|.++..+|+.+.++++..+|+|++|++++++|+.||..+|||||+||+|.+.+.|...++. ..+.++..+||.+
T Consensus 721 lAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAE 800 (953)
T KOG0736|consen 721 LAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAE 800 (953)
T ss_pred HHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876554 5889999999999
Q ss_pred hcCCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCC-CHHHHHHHHHHHHhhCCCCCcccHHHHHHHcC-CCc
Q 001150 1031 WDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLP-DAPNRAKILQVILAKEDLSPDVDFDAIANMTD-GYS 1106 (1138)
Q Consensus 1031 Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lP-d~eeR~eIL~~ll~k~~l~~dvdl~~LA~~te-GyS 1106 (1138)
||++.......|+|||+||+|+.|||+++| |||+.++++.+ +.+.+..+++.+.++..++.++|+.++|+.+. .||
T Consensus 801 LDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~T 880 (953)
T KOG0736|consen 801 LDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMT 880 (953)
T ss_pred hhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCc
Confidence 999987667899999999999999999999 99999999887 67788999999999999999999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001150 1107 GSDLKNLCVTAAHRPIKEILEKE 1129 (1138)
Q Consensus 1107 gaDL~~L~~~Aa~~ai~eiie~e 1129 (1138)
|+|+..||..|.+.|++|.+...
T Consensus 881 GADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 881 GADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998654
No 5
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-48 Score=429.91 Aligned_cols=315 Identities=62% Similarity=0.976 Sum_probs=295.6
Q ss_pred hhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhhhccc-ccCCHHHHHHHHh
Q 001150 809 LCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLK-DVVTENEFEKRLL 887 (1138)
Q Consensus 809 Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s~k-~~v~~~e~e~~ll 887 (1138)
.|..+..+....++.++.+|++||+.+...+.-+....+..+++.++...+++.... .+.+ ..+..++++..++
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~ 78 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDPNLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIA 78 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccChhhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhh
Confidence 566666777888999999999999999888774448889999999987777665332 2233 4788999999999
Q ss_pred cCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 888 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 888 ~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
++++++.++.++|+||+|++.+++.|++.+.+|+++|+.|..+...+|++|||||||||||||+||+|+|++.|.+|+.+
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEe
Q 001150 968 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 968 d~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaT 1047 (1138)
.++.+.++|+|+.++.++.+|..|.+.+|+||||||||.+++.| ...+|++...+.++||..|||+.++++.+|+|+|+
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999 78999999999999999999999998889999999
Q ss_pred cCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1048 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1048 TN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
||+|.+||++++||+..+++|++|+.++|.+|++.+++++++++++|+..+|.+|+||||+||+++|..|++.+++++++
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 001150 1128 KE 1129 (1138)
Q Consensus 1128 ~e 1129 (1138)
++
T Consensus 318 ~~ 319 (386)
T KOG0737|consen 318 SE 319 (386)
T ss_pred hc
Confidence 86
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-42 Score=409.50 Aligned_cols=430 Identities=32% Similarity=0.487 Sum_probs=346.3
Q ss_pred eeeccCCCCCCCCCC-----CCCCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcC
Q 001150 598 GVRFDKPIPDGVDLG-----GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG 672 (1138)
Q Consensus 598 gV~Fd~~~~~~~~l~-----~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~ 672 (1138)
||.+++|+++|+++. ++ +..|+...+..++++|+++ .+..+..+|+-+.. ..|.|+|+||++.+...
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~ 91 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANE---GAEFLSINGPEILSKYVGE--SELRLRELFEEAEK---LAPSIIFIDEIDALAPK 91 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhc---cCcccccCcchhhhhhhhH--HHHHHHHHHHHHHH---hCCCeEeechhhhcccC
Confidence 789999999999933 33 5455888999999999999 88899999999988 88899999999998873
Q ss_pred Ccc----hhhHHHHHH----hcC-CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCc
Q 001150 673 NSD----SYSTFKSRL----EKL-PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEI 743 (1138)
Q Consensus 673 ~~~----~~~~lk~~L----~~l-~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~ 743 (1138)
... ....+...| +.+ .+.|+++|++++.+..+++ ++||||
T Consensus 92 ~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a-------~~~~~~------------------------ 140 (494)
T COG0464 92 RSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPA-------KRRPGR------------------------ 140 (494)
T ss_pred ccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChh-------HhCccc------------------------
Confidence 333 222233333 222 4569999999999988888 889998
Q ss_pred hHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHH
Q 001150 744 PKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEK 823 (1138)
Q Consensus 744 ~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~ 823 (1138)
|+..+++.+|+.+.+++|++.+... +....+......+..+.|+.++|+..+|.++...
T Consensus 141 ----------~~~~~~~~~~~~~~~~ei~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~------- 199 (494)
T COG0464 141 ----------FDREIEVNLPDEAGRLEILQIHTRL----MFLGPPGTGKTLAARTVGKSGADLGALAKEAALR------- 199 (494)
T ss_pred ----------cceeeecCCCCHHHHHHHHHHHHhc----CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHH-------
Confidence 8889999999999999999987644 2233356666777888999999999988754331
Q ss_pred HHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccc
Q 001150 824 IVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDI 903 (1138)
Q Consensus 824 iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI 903 (1138)
+..+.+ ........++.+++..++..+ .+ . ..+-...+.++|.++
T Consensus 200 ----~~~r~~-----~~~~~~~~~~~~~~~~~l~~~---~~--------------~---------~~~~~~~~~v~~~di 244 (494)
T COG0464 200 ----ELRRAI-----DLVGEYIGVTEDDFEEALKKV---LP--------------S---------RGVLFEDEDVTLDDI 244 (494)
T ss_pred ----HHHhhh-----ccCcccccccHHHHHHHHHhc---Cc--------------c---------cccccCCCCcceehh
Confidence 111111 001112222333322222200 00 0 122334557899999
Q ss_pred cchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHH
Q 001150 904 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY 983 (1138)
Q Consensus 904 ~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~ 983 (1138)
+|++.+++.+++.+..++.+++.|.+.+ .+++.++|||||||||||+||+++|++++.+|+.++.++++++|+|++++.
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 9999999999999999999999987644 456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHh--c
Q 001150 984 VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--R 1061 (1138)
Q Consensus 984 I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--R 1061 (1138)
++.+|..|++.+|+||||||||.|+..+..... ....+++++|+..|+++... ..|+||+|||+++.+|++++| |
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCc
Confidence 999999999999999999999999988754322 23378999999999998654 679999999999999999999 9
Q ss_pred CCceEEecCCCHHHHHHHHHHHHhhCCC--CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 001150 1062 LPRRLMVNLPDAPNRAKILQVILAKEDL--SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1062 Fd~~I~v~lPd~eeR~eIL~~ll~k~~l--~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eii 1126 (1138)
|+..++|++|+.++|.+||+.++..... ..++++..+++.++||+|+||..+|.+|++.++++..
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986554 5789999999999999999999999999999999874
No 7
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-41 Score=393.99 Aligned_cols=400 Identities=27% Similarity=0.431 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHhhcccCCCeEEEEcchhhhhc------CCcchhhHH--------HHHHhcCCCcEEEEeecccCCCccc
Q 001150 640 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTF--------KSRLEKLPDKVIVIGSHTHTDNRKE 705 (1138)
Q Consensus 640 k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~------~~~~~~~~l--------k~~L~~l~g~VvvIGstt~~d~~d~ 705 (1138)
+..++..|..... .+|.||++||+|-+++ ++...+... .....+.+..|.+|++-.......|
T Consensus 480 Qk~l~~vfse~~~---~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 480 QKFLNNVFSEALW---YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHh---hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 3456666766666 9999999999999997 222222111 1111333556788988765543222
Q ss_pred cCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhh
Q 001150 706 KSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKM 785 (1138)
Q Consensus 706 k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~ 785 (1138)
- |-- .++|..++.++.|+.++|.+||+....+-.- ...
T Consensus 557 ~-------L~s----------------------------------~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-~~~ 594 (952)
T KOG0735|consen 557 L-------LVS----------------------------------PLLFQIVIALPAPAVTRRKEILTTIFSKNLS-DIT 594 (952)
T ss_pred h-------hcC----------------------------------ccceEEEEecCCcchhHHHHHHHHHHHhhhh-hhh
Confidence 2 111 1258778888899999999999865443111 111
Q ss_pred cCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHh
Q 001150 786 KGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNE 865 (1138)
Q Consensus 786 ~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~ 865 (1138)
.++++. .+.+|-||...||.-+ ++.++-.|.- +.+.+....++.++|+.++..+....
T Consensus 595 ~~dLd~--ls~~TEGy~~~DL~if-----------VeRai~~a~l-------eris~~~klltke~f~ksL~~F~P~a-- 652 (952)
T KOG0735|consen 595 MDDLDF--LSVKTEGYLATDLVIF-----------VERAIHEAFL-------ERISNGPKLLTKELFEKSLKDFVPLA-- 652 (952)
T ss_pred hHHHHH--HHHhcCCccchhHHHH-----------HHHHHHHHHH-------HHhccCcccchHHHHHHHHHhcChHH--
Confidence 122222 5677889999988432 3334333331 11222223778888888777654321
Q ss_pred hHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCC
Q 001150 866 SKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 945 (1138)
Q Consensus 866 ~k~~~~s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPP 945 (1138)
+.++---...++.|.|++|+.++++.|++.+++|.+.|..|....+.-+ .||||||||
T Consensus 653 ---------------------LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGpp 710 (952)
T KOG0735|consen 653 ---------------------LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPP 710 (952)
T ss_pred ---------------------hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCC
Confidence 1111111223478999999999999999999999999999987665444 799999999
Q ss_pred CCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHH
Q 001150 946 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN 1025 (1138)
Q Consensus 946 GTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~ 1025 (1138)
|||||+||.++|...++.|+.+.++++.++|+|.+|..++.+|..|+..+|||||+||+|.+.++|.... .....++.|
T Consensus 711 GcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVN 789 (952)
T KOG0735|consen 711 GCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVN 789 (952)
T ss_pred CCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999886432 345678999
Q ss_pred HHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcC
Q 001150 1026 EFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTD 1103 (1138)
Q Consensus 1026 ~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~te 1103 (1138)
+||.+|||... -..|.|+|+|.+|+.|||+++| |+|+.++.+.|+..+|.+|++.+.....+..++|++.+|.+|+
T Consensus 790 QlLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~ 867 (952)
T KOG0735|consen 790 QLLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTD 867 (952)
T ss_pred HHHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcC
Confidence 99999999865 3679999999999999999999 9999999999999999999999998888889999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001150 1104 GYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1138)
Q Consensus 1104 GySgaDL~~L~~~Aa~~ai~eiie~ek~ 1131 (1138)
||+|+||+.|+..|.+.|+++++.++..
T Consensus 868 g~tgADlq~ll~~A~l~avh~~l~~~~~ 895 (952)
T KOG0735|consen 868 GFTGADLQSLLYNAQLAAVHEILKREDE 895 (952)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999977653
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-41 Score=373.56 Aligned_cols=229 Identities=41% Similarity=0.721 Sum_probs=216.1
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
..+.++++||+|++++++.|++.+.+|+.+|++|.+.++ .||+|||||||||||||.||+|+|++.++.|+++.+++++
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 345799999999999999999999999999999999886 5669999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
.+|+|+....++.+|..|+.++||||||||||.+.++|... ++....++++.+||.+|||+.+. .+|-||++||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCc
Confidence 99999999999999999999999999999999999988654 45566778888999999999764 789999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+.|||+++| |||+.|+|++|+.+.|.+||+.+..++++..++|++.||..++|+||+||+++|.+|.+.|+++-
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999864
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-40 Score=365.18 Aligned_cols=233 Identities=44% Similarity=0.778 Sum_probs=221.5
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
..+.+.|+||.|++++|+-|+++|.+|+..|+.|. ++.+|+++||++||||||||+||+|+|.+++..|+.|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34579999999999999999999999999999996 4579999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCC--CCEEEEEecCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT--ERILVLAATNRP 1051 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~--~~VLVIaTTN~p 1051 (1138)
++|-|++|+.++-+|+.|+.++|++|||||||.|+.+|....+|++.+++..+||++|||...... ..|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999866532 348999999999
Q ss_pred CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1052 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1052 ~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
++||++|+|||...|+|++|+.+.|..+++..+....+.++++++.||+.++||+|+||.++|++|++.++++.+..
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g 439 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAG 439 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988754
No 10
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-40 Score=375.64 Aligned_cols=428 Identities=20% Similarity=0.230 Sum_probs=330.2
Q ss_pred eeeccCCCCCCCCCC--------CCCCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhccc-----CCCeEEEEc
Q 001150 598 GVRFDKPIPDGVDLG--------GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESR-----SCPFILFMK 664 (1138)
Q Consensus 598 gV~Fd~~~~~~~~l~--------~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~-----~~p~ILfid 664 (1138)
|++.-+||||||||- |--+.-+ --|--.|+|+||+ .+.-|+.||.-+.++.+ .+=-||.||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKI----VNGPeIL~KYVGe--SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKI----VNGPEILNKYVGE--SEENVRKLFADAEEEQRRLGANSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcc----cCcHHHHHHhhcc--cHHHHHHHHHhHHHHHHhhCccCCceEEEeh
Confidence 677778999999942 3333321 1467789999999 88899999998877654 455799999
Q ss_pred chhhhhc------CCcchhhHHHHHH-hcCCC-----cEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCc
Q 001150 665 DAEKSIA------GNSDSYSTFKSRL-EKLPD-----KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDS 732 (1138)
Q Consensus 665 di~~~l~------~~~~~~~~lk~~L-~~l~g-----~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~ 732 (1138)
|||.+.. |+...++.+...| .+.+| ||+|||+|||.|-+||| |-||||
T Consensus 332 EiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEA-------LLRPGR------------- 391 (744)
T KOG0741|consen 332 EIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEA-------LLRPGR------------- 391 (744)
T ss_pred hhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHH-------hcCCCc-------------
Confidence 9999763 6778888888877 44455 99999999999999999 889999
Q ss_pred cccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhcc
Q 001150 733 FGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 812 (1138)
Q Consensus 733 f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~ 812 (1138)
|+.+++|+|||+++|++||++|+.+|+++-.+..|++.-+.+..+++|+|++|+.+..
T Consensus 392 ---------------------lEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk- 449 (744)
T KOG0741|consen 392 ---------------------LEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK- 449 (744)
T ss_pred ---------------------eEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH-
Confidence 8899999999999999999999999999999999999999999999999999988744
Q ss_pred ccccchhhHHHHHHHHHhhhhhcCC----CCCCcccccccchhhhhhHhHHHHHHHhhHhhhhcccccCCHHHHHHHHhc
Q 001150 813 DQSLTNESAEKIVGWALSHHLMQNP----EADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLA 888 (1138)
Q Consensus 813 a~~ls~~~ie~iV~~A~~~~l~~~~----~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s~k~~v~~~e~e~~ll~ 888 (1138)
.+.++|++|++.... ++....++.+.++||.+++..+++. .. +++++++..+..
T Consensus 450 ----------sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA---FG---------~see~l~~~~~~ 507 (744)
T KOG0741|consen 450 ----------SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA---FG---------ISEEDLERFVMN 507 (744)
T ss_pred ----------HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc---cC---------CCHHHHHHHHhC
Confidence 466788889888763 2335588999999999998855443 33 678899998889
Q ss_pred CcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 889 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 889 ~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
+++.+.... ..+.+.-..++. +.+.++ ..|..++||+||||+|||+||..+|...+|||+++-
T Consensus 508 Gmi~~g~~v---------~~il~~G~llv~-qvk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii 570 (744)
T KOG0741|consen 508 GMINWGPPV---------TRILDDGKLLVQ-QVKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKII 570 (744)
T ss_pred CceeecccH---------HHHHhhHHHHHH-Hhhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEe
Confidence 998876532 112222122222 222222 345678999999999999999999999999999976
Q ss_pred ccc-cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEe
Q 001150 969 MSS-ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 969 ~se-L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaT 1047 (1138)
.++ +++........++..+|+.|++++-+||++|+||+|+.. .+.++++.+.+++.|+.++...+++ +++++|++|
T Consensus 571 Spe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--vpIGPRfSN~vlQaL~VllK~~ppk-g~kLli~~T 647 (744)
T KOG0741|consen 571 SPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--VPIGPRFSNLVLQALLVLLKKQPPK-GRKLLIFGT 647 (744)
T ss_pred ChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--cccCchhhHHHHHHHHHHhccCCCC-CceEEEEec
Confidence 655 444333344568899999999999999999999999854 5788899999999999999998876 578999999
Q ss_pred cCCCCCCcH-HHHhcCCceEEecCCCH-HHHHHHHHHHHhhCCCCCcccHHHHHHHcC----CCcHHHHHHHHHHHHH
Q 001150 1048 TNRPFDLDE-AVIRRLPRRLMVNLPDA-PNRAKILQVILAKEDLSPDVDFDAIANMTD----GYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1048 TN~p~~Ld~-aLlrRFd~~I~v~lPd~-eeR~eIL~~ll~k~~l~~dvdl~~LA~~te----GySgaDL~~L~~~Aa~ 1119 (1138)
|.+.+.|.+ .+...|+..++++..+. ++..+++... ++..+.+...++.... +.....|-.|+++|.+
T Consensus 648 TS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 648 TSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred ccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----cCCCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 999887776 68889999998876544 5555555432 3333444444443322 3334666666666654
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=356.61 Aligned_cols=235 Identities=38% Similarity=0.657 Sum_probs=220.2
Q ss_pred CCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 893 ~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
.+...++|.||+|+++....|.+++.. +.+|+.|...++ .|++|||||||||||||+||+|||.+++.||+.|+++++
T Consensus 182 ~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApei 259 (802)
T KOG0733|consen 182 FPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEI 259 (802)
T ss_pred CCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhh
Confidence 334478999999999999999999987 999999998886 566999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccC--CCCEEEEEecCC
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--TERILVLAATNR 1050 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~--~~~VLVIaTTN~ 1050 (1138)
++.+.|++|+.++.+|+.|+..+|||+||||||.+.++|.+ ...+.-+++..+|+..||++.... +.+|+|||+||+
T Consensus 260 vSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 260 VSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred hcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999999876 556777899999999999987653 478999999999
Q ss_pred CCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1051 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1051 p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
|+.||++++| ||++.|.++.|+..+|.+||+.++++..+..++|+..||.+|.||.|+||..||.+|+..|+++++..
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hh
Q 001150 1129 EK 1130 (1138)
Q Consensus 1129 ek 1130 (1138)
..
T Consensus 419 ~~ 420 (802)
T KOG0733|consen 419 SS 420 (802)
T ss_pred cc
Confidence 44
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=335.48 Aligned_cols=239 Identities=42% Similarity=0.739 Sum_probs=219.3
Q ss_pred CcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 889 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 889 ~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
..|-...+.+.|+|+.|++..++.|++.+.+|++.|.+|... .+|.++|||||||||||++||+|+|.+.+-.|+.++
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 334455678999999999999999999999999999999743 679999999999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec
Q 001150 969 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1048 (1138)
Q Consensus 969 ~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT 1048 (1138)
.++|+++|.|++|+.++++|+.|+.+.|+||||||||.+++.| +.+..++.+++..+||++|.|.... +..|+|+++|
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r-~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSR-SENESEASRRIKTEFLVQMQGVGND-NDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCC-CCCchHHHHHHHHHHHHhhhccccC-CCceEEEecC
Confidence 9999999999999999999999999999999999999998877 4567789999999999999998654 6899999999
Q ss_pred CCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
|-|+.||.+++|||+.+|++++|....|..+|+.++...... .+.|+.+|+.+|+||+|+||.-+++.|.+.+++++-.
T Consensus 277 NiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred CCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 999999999999999999999999999999999999775433 6788999999999999999999999999999999865
Q ss_pred hhhh
Q 001150 1128 KEKK 1131 (1138)
Q Consensus 1128 ~ek~ 1131 (1138)
.-.+
T Consensus 357 AthF 360 (439)
T KOG0739|consen 357 ATHF 360 (439)
T ss_pred hhhh
Confidence 5444
No 13
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=357.38 Aligned_cols=420 Identities=21% Similarity=0.261 Sum_probs=308.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcchhhhhc-----C-CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcccccc
Q 001150 644 NTLFEVVFSESRSCPFILFMKDAEKSIA-----G-NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKF 717 (1138)
Q Consensus 644 ~~L~ev~~~~~~~~p~ILfiddi~~~l~-----~-~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~ 717 (1138)
++|..|+.++.+..++||||||||++++ | ++|+.|+|||+| .+|.+.||||||..+|+
T Consensus 249 eRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--ARGeL~~IGATT~~EYR-------------- 312 (786)
T COG0542 249 ERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--ARGELRCIGATTLDEYR-------------- 312 (786)
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH--hcCCeEEEEeccHHHHH--------------
Confidence 4566666666667799999999999997 3 489999999999 66999999999999852
Q ss_pred CCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhh
Q 001150 718 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLG 797 (1138)
Q Consensus 718 gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~ 797 (1138)
++++-|.||.||| ++|.|.+|+.++.+.||+...++ +..+|++.+...|+.
T Consensus 313 ------------------------k~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~----yE~hH~V~i~D~Al~ 363 (786)
T COG0542 313 ------------------------KYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKER----YEAHHGVRITDEALV 363 (786)
T ss_pred ------------------------HHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHH----HHHccCceecHHHHH
Confidence 2333499999999 99999999999999999988755 888999999999998
Q ss_pred cCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccc------------cccchhhhhhHhHHHHHHHh
Q 001150 798 RSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARL------------VLSCESIQYGIGIFQAIQNE 865 (1138)
Q Consensus 798 t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl------------~l~~edl~~al~~lq~i~~~ 865 (1138)
.++.|+..|+.++.|++++|+.+-..+....+... .|..-..+ .+..+.-+.....+..+..-
T Consensus 364 ----aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~ 438 (786)
T COG0542 364 ----AAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKL 438 (786)
T ss_pred ----HHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 56999999999999999999999888887776654 33211000 00000000111111110000
Q ss_pred h----HhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhc---------CCC
Q 001150 866 S----KSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK---------GQL 932 (1138)
Q Consensus 866 ~----k~~~~s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~---------~~~ 932 (1138)
. ....+.+...++.+++.. +++.|..++...+.-.+...+-++.+.|.+.|.+|..+.+...+ ...
T Consensus 439 ~~~~~~~~~~~~~~~v~~~~Ia~-vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp 517 (786)
T COG0542 439 KEGRIPELEKELEAEVDEDDIAE-VVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDP 517 (786)
T ss_pred hhhhhhhHHHHHhhccCHHHHHH-HHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCC
Confidence 0 000000000155566665 67777776665555555555555556666666555544433322 355
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEecccc-----ccccccchHHHH-----HHHHHHHhccCCeEE
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI-----TSKWFGEGEKYV-----KAVFSLASKIAPSVI 999 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~seL-----~s~~iG~~E~~I-----~~lF~~A~k~~PsII 999 (1138)
++|..++||.||+|+|||.||++||..+. -.++++||+++ +++++|.+++|+ +++.+..++.++|||
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySVi 597 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVI 597 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEE
Confidence 78888899999999999999999999994 89999999998 677899999988 568899999999999
Q ss_pred EEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCC-------CCEEEEEecCCC---------------------
Q 001150 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT-------ERILVLAATNRP--------------------- 1051 (1138)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~-------~~VLVIaTTN~p--------------------- 1051 (1138)
+||||| +++..+++.||+.||....+++ .+.+||+|||.-
T Consensus 598 LlDEIE------------KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~ 665 (786)
T COG0542 598 LLDEIE------------KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKE 665 (786)
T ss_pred Eechhh------------hcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHH
Confidence 999998 7789999999999998877654 578999999861
Q ss_pred -------CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh-------CCCCCcc---cHHHHHHHcC--CCcHHHHHH
Q 001150 1052 -------FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLSPDV---DFDAIANMTD--GYSGSDLKN 1112 (1138)
Q Consensus 1052 -------~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k-------~~l~~dv---dl~~LA~~te--GySgaDL~~ 1112 (1138)
..+.|+|++|++.+|.|...+.+...+|+...+.. .++.-.+ -.+.|+...- .|.++-|+.
T Consensus 666 ~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R 745 (786)
T COG0542 666 AVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRR 745 (786)
T ss_pred HHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHH
Confidence 13358999999999999999999999999887754 2333222 2455555432 567788888
Q ss_pred HHHHHHHHHHHHHH
Q 001150 1113 LCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1113 L~~~Aa~~ai~eii 1126 (1138)
+++.-....+.+.+
T Consensus 746 ~Iq~~i~~~La~~i 759 (786)
T COG0542 746 AIQQEIEDPLADEI 759 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776665544
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.4e-33 Score=334.45 Aligned_cols=374 Identities=20% Similarity=0.345 Sum_probs=270.6
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCCcchhhHHHHH---HhcCCCcEEEEeecccCCCccccCCCCCccccccC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR---LEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 718 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~~~~~lk~~---L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~g 718 (1138)
.+++|- .+......+|.|+.++|+|.++. +......|+.. +...+..|+|++.....
T Consensus 67 p~~al~-~i~~~~~~~~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~~------------------ 126 (489)
T CHL00195 67 PLQALE-FIEKLTPETPALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIASELNI------------------ 126 (489)
T ss_pred HHHHHH-HHHhcCCCCCcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcCCCCC------------------
Confidence 456663 44443445689999999999883 33333333332 23346677777764322
Q ss_pred CchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhc
Q 001150 719 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGR 798 (1138)
Q Consensus 719 r~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t 798 (1138)
|. .|.+.+ ..++++||+.++...+++..... . .
T Consensus 127 -----------p~-----------------el~~~~-~~~~~~lP~~~ei~~~l~~~~~~----~--------------~ 159 (489)
T CHL00195 127 -----------PK-----------------ELKDLI-TVLEFPLPTESEIKKELTRLIKS----L--------------N 159 (489)
T ss_pred -----------CH-----------------HHHhce-eEEeecCcCHHHHHHHHHHHHHh----c--------------C
Confidence 11 233334 68899999999999988654321 0 1
Q ss_pred CCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhhhcccccCC
Q 001150 799 SGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVT 878 (1138)
Q Consensus 799 ~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s~k~~v~ 878 (1138)
..++..+++.++.....++...++.++..++..+ -.++.+++...+.....+
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~k~q~---------------- 211 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIATY------------KTIDENSIPLILEEKKQI---------------- 211 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc------------CCCChhhHHHHHHHHHHH----------------
Confidence 1234455566666666666666666655443211 112222222222111110
Q ss_pred HHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHH
Q 001150 879 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 879 ~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~ 958 (1138)
+.+ ..++.......+|++++|++.+|+.|.+..... .......+. .++++|||+||||||||++|+++|+
T Consensus 212 ---~~~---~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 212 ---ISQ---TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred ---Hhh---hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHH
Confidence 010 122333334678999999999999998765321 122223333 4568999999999999999999999
Q ss_pred HhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccC
Q 001150 959 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1038 (1138)
Q Consensus 959 elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~ 1038 (1138)
+++.+|+.++++.+.++|+|+++..++++|..|+..+||||||||||.++..+..........+++.+|+..++..
T Consensus 282 e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 282 DWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred HhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----
Confidence 9999999999999999999999999999999999999999999999999876554455567788899998888752
Q ss_pred CCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCC--CcccHHHHHHHcCCCcHHHHHHHH
Q 001150 1039 TERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS--PDVDFDAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1039 ~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~--~dvdl~~LA~~teGySgaDL~~L~ 1114 (1138)
..+++||||||.++.||++++| ||+..++|+.|+.++|.+||+.++.+.... .+.++..||..|+||||+||+++|
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 4679999999999999999998 999999999999999999999999886533 478899999999999999999999
Q ss_pred HHHHHHHHHH
Q 001150 1115 VTAAHRPIKE 1124 (1138)
Q Consensus 1115 ~~Aa~~ai~e 1124 (1138)
.+|++.|+.+
T Consensus 438 ~eA~~~A~~~ 447 (489)
T CHL00195 438 IEAMYIAFYE 447 (489)
T ss_pred HHHHHHHHHc
Confidence 9999988753
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-35 Score=336.49 Aligned_cols=229 Identities=41% Similarity=0.642 Sum_probs=212.6
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc
Q 001150 892 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1138)
Q Consensus 892 ~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~se 971 (1138)
+.....++|+|+-|.++.|++|++.+.+ ++.|+.|.+.+..-| +||||+||||||||+||||+|.+.+.||+....++
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLP-KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLP-KGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCC-CceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 3334478999999999999999998874 899999998775444 89999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
+-..++|...+.++.+|..|++.+||||||||||.+.++|.....+ ..+..+|+||..|||+..+ ..|+||++||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccCCh
Confidence 9999999999999999999999999999999999999988765555 8899999999999999765 789999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+.||+++.| |||++|.++.||..-|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.||..|..+.
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 999999999 99999999999999999999999999999999999999999999999999999999998876543
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=291.69 Aligned_cols=230 Identities=37% Similarity=0.648 Sum_probs=214.5
Q ss_pred CCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 893 ~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
...+.+++.|++|++-.++.+++.+.+|+.+.++|.+-++. |++|+|||||||||||+||+|+|+...+.|+++.++++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 34567999999999999999999999999999999988754 56999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
+.+|.|+....++.+|+.|+..+|+||||||||.+..+|... +......+++-+|+..|||+... .+|-||++||+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnr 303 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNR 303 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCc
Confidence 999999999999999999999999999999999999887653 34456778999999999999764 78999999999
Q ss_pred CCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1051 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1051 p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
.+.|||+++| |+++.|+|++|+..+++-+|..+..++++.+++|++.+..+-+..+++||..+|++|.+.|+++-
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n 380 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN 380 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999863
No 17
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-34 Score=349.35 Aligned_cols=412 Identities=19% Similarity=0.231 Sum_probs=265.1
Q ss_pred CceeeeeccCCCCcceeeccCCCCCCCC-----CCCCCCCC---cccccccccccccCCCchhhHHHHHHHHHHHHhhcc
Q 001150 583 GKVALLFEDNPSSKIGVRFDKPIPDGVD-----LGGQCEGG---HGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 654 (1138)
Q Consensus 583 g~v~~~~e~n~s~kvgV~Fd~~~~~~~~-----l~~~c~~~---~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~ 654 (1138)
+++...|..++- =||+||+|||+|+| ||+.|+.+ ++|||+||+|||||||+| ++++++.||+.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgE--aERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGE--AERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCc--HHHHHHHHHHHHhc--
Confidence 444444445552 38999999999999 88999999 999999999999999999 99999999999999
Q ss_pred cCCCeEEEEcchhhhhc----CCcchhhHHHHHHhcC------CCcEEEEeecccCCCccccCCCCCccccccCCchhhh
Q 001150 655 RSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEKL------PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTAL 724 (1138)
Q Consensus 655 ~~~p~ILfiddi~~~l~----~~~~~~~~lk~~L~~l------~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l 724 (1138)
++|.|||||||+.+.. .+.+.|+.++++|..| +|+|+|||||||+|++|++ ||||||
T Consensus 362 -~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpa-------LRRPgr----- 428 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPA-------LRRPGR----- 428 (1080)
T ss_pred -cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchh-------hcCCcc-----
Confidence 9999999999998774 6788999999999655 8999999999999999999 999999
Q ss_pred ccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcc
Q 001150 725 LDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECE 804 (1138)
Q Consensus 725 ~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsga 804 (1138)
|+++|++++|+.++|.+|+.+|..++...+.. ...+..+-.+.||.|+
T Consensus 429 -----------------------------fdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~---~l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 429 -----------------------------FDREFYFPLPDVDARAKILDIHTRKWEPPISR---ELLLWLAEETSGYGGA 476 (1080)
T ss_pred -----------------------------cceeEeeeCCchHHHHHHHHHhccCCCCCCCH---HHHHHHHHhccccchH
Confidence 88899999999999999999998775433211 1223345567899999
Q ss_pred cccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhh--------hccccc
Q 001150 805 GLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLK--------KSLKDV 876 (1138)
Q Consensus 805 DL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~--------~s~k~~ 876 (1138)
||+.+|.++++..... ..-+.+............+.+.-.+|..++. ++.+...+.. ..++..
T Consensus 477 DlkaLCTeAal~~~~r------~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~---~i~ps~~R~~~~~s~Pl~~~~~~l 547 (1080)
T KOG0732|consen 477 DLKALCTEAALIALRR------SFPQIYSSSDKLLIDVALIKVEVRDFVEAMS---RITPSSRRSSVIFSRPLSTYLKPL 547 (1080)
T ss_pred HHHHHHHHHhhhhhcc------ccCeeecccccccccchhhhhhhHhhhhhhh---ccCCCCCccccCCCCCCCcceecc
Confidence 9999999988754221 0000000000000011222233333333332 2222211100 000000
Q ss_pred CCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhh-hhcCCCCCCCceEEEECCCCCCHHHHHHH
Q 001150 877 VTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKA 955 (1138)
Q Consensus 877 v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~-f~~~~~~rP~~gILL~GPPGTGKT~LArA 955 (1138)
++-.++.. .+..++. +......+.+...+.....+. |.-..+.+| .+|+.|..|.|.+++..|
T Consensus 548 l~~~~~~~-~iq~~~~-------------va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~a 611 (1080)
T KOG0732|consen 548 LPFQDALE-DIQGLMD-------------VASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPA 611 (1080)
T ss_pred cchHHHHH-Hhhcchh-------------HHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHH
Confidence 10000000 1111111 111111111111100000000 111222333 599999999999999999
Q ss_pred HHHHh-CCceEEEecccccccc-ccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcC
Q 001150 956 VATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1033 (1138)
Q Consensus 956 LA~el-g~~fi~Id~seL~s~~-iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldg 1033 (1138)
|.+.+ ++++..++.+.+.... ....+..+..+|.+|++..||||||.++|.|..... -.++.+|+..++.
T Consensus 612 Ilh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p--------~s~~~~~~~~l~~ 683 (1080)
T KOG0732|consen 612 ILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIP--------VSFLEEFLSSLDE 683 (1080)
T ss_pred HHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCc--------chhhhcchhcchh
Confidence 99999 8999999988887776 677888999999999999999999999999964322 1233344443332
Q ss_pred CCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh
Q 001150 1034 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1034 l~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k 1086 (1138)
... ...+..+-|-+..+.-.+ ..++.+..|..+.+..+|+..+++
T Consensus 684 ~~~--~t~i~e~~t~~~~~~~~~------~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 684 KAL--STPILELHTWDTSFESVN------KSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred hhh--ccchhhhccccccccccC------ccccccccchhhhhHHHHHHHHHH
Confidence 211 122222222211111000 134556778888888888777754
No 18
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=6.6e-31 Score=327.62 Aligned_cols=397 Identities=19% Similarity=0.238 Sum_probs=272.6
Q ss_pred HHHHHHHHHHHhhcccCCCeEEEEcchhhhhc------CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcc
Q 001150 640 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 713 (1138)
Q Consensus 640 k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~------~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~ 713 (1138)
+..+..+++.+.+ .+|+||||||||.+++ |..+..+.|++.|+ +|.|.|||+||..++
T Consensus 260 e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~----------- 323 (731)
T TIGR02639 260 EERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY----------- 323 (731)
T ss_pred HHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH-----------
Confidence 3356666666655 6799999999999985 24678899999995 599999999998763
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhh
Q 001150 714 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLR 793 (1138)
Q Consensus 714 l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~ 793 (1138)
+..++.|.+|.||| +.|+|.+|+.+++.+||+..+.+ +...+++.+..
T Consensus 324 ---------------------------~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~----~e~~~~v~i~~ 371 (731)
T TIGR02639 324 ---------------------------KNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEK----YEEFHHVKYSD 371 (731)
T ss_pred ---------------------------HHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHH----HHhccCcccCH
Confidence 12344699999999 79999999999999999987654 44456676777
Q ss_pred HhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhhhcc
Q 001150 794 TVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSL 873 (1138)
Q Consensus 794 ~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s~ 873 (1138)
.++. .+.+|...++.++.++.++|+.+-..+....+. +....+..++.+++..++..+..+ |..
T Consensus 372 ~al~----~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~----~~~~~~~~v~~~~i~~~i~~~tgi-P~~------- 435 (731)
T TIGR02639 372 EALE----AAVELSARYINDRFLPDKAIDVIDEAGASFRLR----PKAKKKANVSVKDIENVVAKMAHI-PVK------- 435 (731)
T ss_pred HHHH----HHHHhhhcccccccCCHHHHHHHHHhhhhhhcC----cccccccccCHHHHHHHHHHHhCC-Chh-------
Confidence 7776 457788888888999999888775443322221 111123446666666555543221 100
Q ss_pred cccCCHHHHHHHH-hcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHH
Q 001150 874 KDVVTENEFEKRL-LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTML 952 (1138)
Q Consensus 874 k~~v~~~e~e~~l-l~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~L 952 (1138)
.+..++.+... +.. .--..+.|++.+++.+.+.+..... .-....+|...+||+||+|||||+|
T Consensus 436 --~~~~~~~~~l~~l~~--------~l~~~v~GQ~~ai~~l~~~i~~~~~-----g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 436 --TVSVDDREKLKNLEK--------NLKAKIFGQDEAIDSLVSSIKRSRA-----GLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred --hhhhHHHHHHHHHHH--------HHhcceeCcHHHHHHHHHHHHHHhc-----CCCCCCCCceeEEEECCCCccHHHH
Confidence 01111111100 000 0012456777777777766652110 0012245666799999999999999
Q ss_pred HHHHHHHhCCceEEEeccccc-----cccccchHHHH-----HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHH
Q 001150 953 AKAVATEAGANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRK 1022 (1138)
Q Consensus 953 ArALA~elg~~fi~Id~seL~-----s~~iG~~E~~I-----~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~ 1022 (1138)
|++||+.++.++++++|+++. +.++|.+.+++ +.+...+++.+.+||||||||.+ +..
T Consensus 501 A~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka------------~~~ 568 (731)
T TIGR02639 501 AKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA------------HPD 568 (731)
T ss_pred HHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc------------CHH
Confidence 999999999999999998863 33455554443 34666677788899999999966 245
Q ss_pred HHHHHHHHhcCCCcc-------CCCCEEEEEecCCC-------------------------CCCcHHHHhcCCceEEecC
Q 001150 1023 MKNEFMVNWDGLRTK-------DTERILVLAATNRP-------------------------FDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1023 il~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p-------------------------~~Ld~aLlrRFd~~I~v~l 1070 (1138)
+.+.|++.++..... +-.+++||+|||.. ..+.|+|+.||+.+|.|..
T Consensus 569 ~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~p 648 (731)
T TIGR02639 569 IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNP 648 (731)
T ss_pred HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCC
Confidence 677788877765332 23578899999863 1256899999999999999
Q ss_pred CCHHHHHHHHHHHHhh-------CCCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1071 PDAPNRAKILQVILAK-------EDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1071 Pd~eeR~eIL~~ll~k-------~~l~---~dvdl~~LA~~--teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
.+.++..+|++..+.+ .++. .+..++.|+.. ...|..+.|+.+++.....++.+.+=
T Consensus 649 Ls~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l 717 (731)
T TIGR02639 649 LSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEIL 717 (731)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHH
Confidence 9999999999998764 1222 22335666664 33677899999999988888766553
No 19
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.98 E-value=5.2e-31 Score=326.07 Aligned_cols=397 Identities=18% Similarity=0.232 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc------CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCc
Q 001150 639 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGL 712 (1138)
Q Consensus 639 ~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~------~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~ 712 (1138)
.+.-++.+++.+.. .++.||||||||.+++ ++.++.+.|++.|. +|+|.|||+||..++.
T Consensus 263 ~e~rl~~l~~~l~~---~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~--------- 328 (758)
T PRK11034 263 FEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS--------- 328 (758)
T ss_pred HHHHHHHHHHHHHh---cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHH---------
Confidence 34456667776665 7899999999999985 35678899999994 5999999999988741
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchh
Q 001150 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 792 (1138)
Q Consensus 713 ~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l 792 (1138)
...+.|.+|.||| ++|.|++|+.+++++||+....+ +...|++.+.
T Consensus 329 -----------------------------~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~----ye~~h~v~i~ 374 (758)
T PRK11034 329 -----------------------------NIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPK----YEAHHDVRYT 374 (758)
T ss_pred -----------------------------HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH----hhhccCCCcC
Confidence 1223599999999 79999999999999999987644 6677888888
Q ss_pred hHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhhhc
Q 001150 793 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKS 872 (1138)
Q Consensus 793 ~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s 872 (1138)
..++.+ +.+|...++.++.+++++|+.+-..++...+. +....+..++.+++...+..+..+ |...
T Consensus 375 ~~al~~----a~~ls~ryi~~r~lPdKaidlldea~a~~~~~----~~~~~~~~v~~~~i~~v~~~~tgi-p~~~----- 440 (758)
T PRK11034 375 AKAVRA----AVELAVKYINDRHLPDKAIDVIDEAGARARLM----PVSKRKKTVNVADIESVVARIARI-PEKS----- 440 (758)
T ss_pred HHHHHH----HHHHhhccccCccChHHHHHHHHHHHHhhccC----cccccccccChhhHHHHHHHHhCC-Chhh-----
Confidence 888873 57888899999999999998887666544332 111122235555555444332211 1000
Q ss_pred ccccCCHHHHHH--HHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHH
Q 001150 873 LKDVVTENEFEK--RLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKT 950 (1138)
Q Consensus 873 ~k~~v~~~e~e~--~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT 950 (1138)
+..++.+. .+... + -..++|++++++.|.+.+...... -....+|..++||+||||||||
T Consensus 441 ----~~~~~~~~l~~l~~~-L--------~~~ViGQ~~ai~~l~~~i~~~~~g-----l~~~~kp~~~~Lf~GP~GvGKT 502 (758)
T PRK11034 441 ----VSQSDRDTLKNLGDR-L--------KMLVFGQDKAIEALTEAIKMSRAG-----LGHEHKPVGSFLFAGPTGVGKT 502 (758)
T ss_pred ----hhhhHHHHHHHHHHH-h--------cceEeCcHHHHHHHHHHHHHHhcc-----ccCCCCCcceEEEECCCCCCHH
Confidence 11111111 01111 0 124678899998888887632110 0122467678999999999999
Q ss_pred HHHHHHHHHhCCceEEEecccc-----ccccccchHHHH-----HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHH
Q 001150 951 MLAKAVATEAGANFINISMSSI-----TSKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAM 1020 (1138)
Q Consensus 951 ~LArALA~elg~~fi~Id~seL-----~s~~iG~~E~~I-----~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al 1020 (1138)
++|+++|..++.+|+.++|+++ .++++|.+.+++ ..+.+..++.+.+||||||||.+ +
T Consensus 503 ~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~ 570 (758)
T PRK11034 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------H 570 (758)
T ss_pred HHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------h
Confidence 9999999999999999999886 344666555444 24555667778899999999966 3
Q ss_pred HHHHHHHHHHhcCCCcc-------CCCCEEEEEecCCC-------------------------CCCcHHHHhcCCceEEe
Q 001150 1021 RKMKNEFMVNWDGLRTK-------DTERILVLAATNRP-------------------------FDLDEAVIRRLPRRLMV 1068 (1138)
Q Consensus 1021 ~~il~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p-------------------------~~Ld~aLlrRFd~~I~v 1068 (1138)
..+.+.|++.|+..... +-.++++|+|||.- ..+.|+|++|++.+|.|
T Consensus 571 ~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f 650 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF 650 (758)
T ss_pred HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEc
Confidence 56778888888754322 22578899999832 23668999999999999
Q ss_pred cCCCHHHHHHHHHHHHhh-------CCCCCccc---HHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1069 NLPDAPNRAKILQVILAK-------EDLSPDVD---FDAIANMT--DGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1069 ~lPd~eeR~eIL~~ll~k-------~~l~~dvd---l~~LA~~t--eGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
+..+.++..+|+..++.+ .++.-.++ ++.|+... ..|..+.|+.+++.-...++.+.+=
T Consensus 651 ~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il 721 (758)
T PRK11034 651 DHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999877653 24432222 55566433 2566789999998888887776553
No 20
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.3e-32 Score=286.22 Aligned_cols=227 Identities=36% Similarity=0.632 Sum_probs=210.9
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+..+++-++|++...+.+++.+.+|.++|++|...++..| +|+|||||||+|||.||+++|+...+.|++++.++++.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 4567888999999999999999999999999999888877 899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC--cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
|+|+....++.+|-.|+.++|+|||+||||.+...|.. .++.....+.+.+|+..+||+... .++-||++||+.+.
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridi 298 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDI 298 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEecccccc
Confidence 99999999999999999999999999999999866532 233455567777889999999654 78999999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
||++++| |+|+.|+|+.|+.+.|.+|++.+..++++...+++..+|+...|.+|++++.+|.+|.+.|++|-
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998864
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.2e-32 Score=286.08 Aligned_cols=229 Identities=34% Similarity=0.618 Sum_probs=212.1
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+..++.||+|+++.++.|.+.+.+|+.+.+.|.+.++ +|++|+|+|||||||||.+|+|.|...+..|..+-++.++.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45678999999999999999999999999999998875 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.|+|...+.++..|..|+..+|+||||||+|.+..+|... .+.....+.+.+|+..+||+.+. ..|-|||+||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 9999999999999999999999999999999998887543 33445566777889999999765 7899999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eii 1126 (1138)
.|||+++| |+++.|+|+.|+.+.|.+|++.+.+++++.+++++++||+-|++|+|++++.+|.+|.+.|+++-.
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999988653
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-31 Score=323.69 Aligned_cols=228 Identities=43% Similarity=0.703 Sum_probs=210.2
Q ss_pred CCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 893 ~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
..+++++|.|+.|.+++++.|.|+|.. +++|+.|.+.+. +.|+|+||+||||||||.||+|+|.+.+.||+.++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGA-KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCC-cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 455679999999999999999999985 999999998875 556999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCC---CcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~---~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN 1049 (1138)
+..+.|.....++.+|..|+..+||||||||||.+...|. ..+.+......+|+|+..||++... ..|+|+|+||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 9999999999999999999999999999999999988874 3344556678899999999999765 7899999999
Q ss_pred CCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1050 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1050 ~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
+++.||++++| |||+.|.++.|+...|.+||+.++.+.++. +++++..||.+|.||+|+||.|+|++|+..|.++
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~ 536 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK 536 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh
Confidence 99999999999 999999999999999999999999998885 7888999999999999999999999999998874
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=285.09 Aligned_cols=223 Identities=33% Similarity=0.536 Sum_probs=198.3
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~ 976 (1138)
.++|+|++|+++.|+..+- ++..+.+|+.|.++. +++||||||||||||++|+|+|++++.||+.+...++++.+
T Consensus 117 ~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRL-IMEYLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHH-HHHHhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988754 445688999998653 47999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcH
Q 001150 977 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1056 (1138)
Q Consensus 977 iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~ 1056 (1138)
+|.....++++|+.|++.+|||+||||+|.+.-.|.-+.-......+.|.||..||++. ++..|..||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997554333223344578899999999997 4688999999999999999
Q ss_pred HHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHH-HHHHHHHHHHHHHH
Q 001150 1057 AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKN-LCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1057 aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~-L~~~Aa~~ai~eii 1126 (1138)
++++||...|+|.+|+.++|.+|++.++++..+.-+.+++.++..|.|+||+||.. ++..|.++||.+--
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~ 340 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR 340 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999999998999999999999999999985 45677788887653
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=6.3e-31 Score=305.80 Aligned_cols=228 Identities=39% Similarity=0.658 Sum_probs=207.7
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+||+|++.+++.|++.+.+|+.+++.|.+.++. |++++||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457899999999999999999999999999999887754 5589999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
+|.|+.+..++.+|..|+...|+||||||||.++..+... +......+++.+|+..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998766432 22345567788899999887543 5799999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
.||++++| ||+..|+|+.|+.++|.+||+.++.+.++..++++..++..++||+|+||+++|++|++.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999998 99999999999999999999999999998899999999999999999999999999999998773
No 25
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=306.23 Aligned_cols=230 Identities=50% Similarity=0.859 Sum_probs=216.1
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
...+.|+|+.|++.+++.+.+.+.+|..+++.|.. ...|++++||+||||+|||+|++|||.+.+..|+.++++.|.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34688999999999999999999999999999964 4678899999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L 1054 (1138)
+|+|+.|+.++.+|..|+..+|+||||||||.++..| .+..++..+++..+++..+++.......+|+||||||.|+.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999988 677788889999999999999998888899999999999999
Q ss_pred cHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCC-CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1055 d~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~-l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
|++++|||..++++++|+.+.|..+|+.++.+.+ ...+.++..|+++|+||++.||.++|..|++..+++...
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999999999999999999999998873 336788999999999999999999999999999887755
No 26
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=286.16 Aligned_cols=227 Identities=37% Similarity=0.642 Sum_probs=211.1
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+..++.|++|++...+.+++.+.+|+.+|+.|...++ +|++|++|||+||||||.||+|+|+...+.|+++-.++++.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 4678999999999999999999999999999988774 677999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC--cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
|.|...+.++++|..|..++|+|+||||||.+..+|++ .++.....+.+.+||..+|++.. ...|-||++||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 99999999999999999999999999999999988764 34455566667799999999976 478999999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
|||+++| |+|+.|.|+.|+...+.+||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+++-
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999998889999999999999999998875
No 27
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=279.85 Aligned_cols=226 Identities=35% Similarity=0.634 Sum_probs=210.4
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+.+++.|++|..+.++.|++.+..|+.+|+.|...++. |++|+|+|||||||||.+|+|+|+..++-|+++-.++++.+
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvqk 250 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH
Confidence 47899999999999999999999999999999998864 56999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
|+|+....++.+|+.|+...-||||+||||.+.+.|... ++.....+.+.+++.++|++... .++-|+++||+|+.
T Consensus 251 yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpdt 328 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPDT 328 (435)
T ss_pred HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCCC
Confidence 999999999999999999999999999999999988654 44455667777889999999764 78999999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
|||+++| |+++.++|.+|+.+.|..||+.+.+.+.+..++-++.||+++..-+|++|+.+|.+|.+.||+.
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999988864
No 28
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1e-28 Score=310.68 Aligned_cols=423 Identities=20% Similarity=0.228 Sum_probs=274.8
Q ss_pred HHHHHHHHHHhhcccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcccc
Q 001150 641 LLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 715 (1138)
Q Consensus 641 ~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~ 715 (1138)
..|..+++.+.. ..+++||||||||.+++ +++++.+.|++.|+ +|.|.|||+||..++
T Consensus 266 ~~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~------------- 328 (852)
T TIGR03345 266 NRLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEY------------- 328 (852)
T ss_pred HHHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHH-------------
Confidence 345555555543 15799999999999985 67788899999995 599999999998874
Q ss_pred ccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHh
Q 001150 716 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 795 (1138)
Q Consensus 716 r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~v 795 (1138)
+..++.|.+|.||| +.|.|++|+.+++.+||+..... +...+++.+...+
T Consensus 329 -------------------------~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~----~e~~~~v~i~d~a 378 (852)
T TIGR03345 329 -------------------------KKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPV----LEKHHGVLILDEA 378 (852)
T ss_pred -------------------------hhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHh----hhhcCCCeeCHHH
Confidence 12334699999999 89999999999999999765533 4445677777777
Q ss_pred hhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCC--cc--cc--------cccchh------------
Q 001150 796 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--DA--RL--------VLSCES------------ 851 (1138)
Q Consensus 796 L~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~--~~--kl--------~l~~ed------------ 851 (1138)
+. .+..|...|+.+..+++++|+.+-..+....+.....|.. +. ++ .+..++
T Consensus 379 l~----~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (852)
T TIGR03345 379 VV----AAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAE 454 (852)
T ss_pred HH----HHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHH
Confidence 76 4578888999999999999998887776666554333321 00 00 000000
Q ss_pred -------hhhhHhHHHHHHHhhH---------------------------------------hhhh---cccccCCHHHH
Q 001150 852 -------IQYGIGIFQAIQNESK---------------------------------------SLKK---SLKDVVTENEF 882 (1138)
Q Consensus 852 -------l~~al~~lq~i~~~~k---------------------------------------~~~~---s~k~~v~~~e~ 882 (1138)
+...+..+.......+ ...+ .....++..++
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i 534 (852)
T TIGR03345 455 LRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAV 534 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHH
Confidence 0000000000000000 0000 00122555555
Q ss_pred HHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhc------C---CCCCCCceEEEECCCCCCHHHHH
Q 001150 883 EKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK------G---QLTKPCKGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 883 e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~------~---~~~rP~~gILL~GPPGTGKT~LA 953 (1138)
.. +++.+..++...+..++...+.++.+.|.+.+.++....+...+ . ...+|...+||+||+|+|||++|
T Consensus 535 ~~-vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 535 AE-VVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred HH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 54 56666666554444443333333333333333333222211111 1 12455556899999999999999
Q ss_pred HHHHHHh---CCceEEEeccccc-----cccccchHHHH-----HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHH
Q 001150 954 KAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAM 1020 (1138)
Q Consensus 954 rALA~el---g~~fi~Id~seL~-----s~~iG~~E~~I-----~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al 1020 (1138)
++||..+ ...|+.++|+++. ++++|.+.+++ +.+.+..++.+++||+|||||.. +
T Consensus 614 ~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka------------~ 681 (852)
T TIGR03345 614 LALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA------------H 681 (852)
T ss_pred HHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc------------C
Confidence 9999999 4588999998763 34556555554 24567777889999999999854 3
Q ss_pred HHHHHHHHHHhcCCCccC-------CCCEEEEEecCCCC-----------------------------CCcHHHHhcCCc
Q 001150 1021 RKMKNEFMVNWDGLRTKD-------TERILVLAATNRPF-----------------------------DLDEAVIRRLPR 1064 (1138)
Q Consensus 1021 ~~il~~LL~~Ldgl~~~~-------~~~VLVIaTTN~p~-----------------------------~Ld~aLlrRFd~ 1064 (1138)
..+++.|++.++.....+ -.+.+||+|||... .+.|+|++|++
T Consensus 682 ~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~- 760 (852)
T TIGR03345 682 PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT- 760 (852)
T ss_pred HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-
Confidence 566677777777654332 25789999998511 25578899996
Q ss_pred eEEecCCCHHHHHHHHHHHHhhC--------CCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1065 RLMVNLPDAPNRAKILQVILAKE--------DLS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1065 ~I~v~lPd~eeR~eIL~~ll~k~--------~l~---~dvdl~~LA~~te--GySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+|.|...+.++..+|++..+... ++. ++.-.+.|+.... .|..+.|+++++.-...++.+.+=.
T Consensus 761 iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~ 837 (852)
T TIGR03345 761 VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE 837 (852)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998877541 332 2223566776654 3568999999998888887766533
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=289.55 Aligned_cols=232 Identities=19% Similarity=0.281 Sum_probs=197.9
Q ss_pred HHHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHH
Q 001150 374 VFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKA 453 (1138)
Q Consensus 374 ~~~~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakA 453 (1138)
-|+..+...||.+.+|+|+|++.... |.+|+.|.+.+..+|++++++++ ..|...+++|||+|||| ++++|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~-g~Ll~p~kGiLL~GPpG--~GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAK-GKLLRPPKGILLYGPPG--TGKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhcc-cccccCCccceecCCCC--chHHHHHHH
Confidence 37888999999999999999998888 99999999999999999999874 46889999999999999 999999999
Q ss_pred HHhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 001150 454 LAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPK 533 (1138)
Q Consensus 454 LA~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1138)
+|++.||.|+.|+++.|.
T Consensus 147 ~Akeaga~fInv~~s~lt-------------------------------------------------------------- 164 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLT-------------------------------------------------------------- 164 (386)
T ss_pred HHHHcCCCcceeeccccc--------------------------------------------------------------
Confidence 999999999999983332
Q ss_pred ccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCC
Q 001150 534 METDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGG 613 (1138)
Q Consensus 534 ~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~ 613 (1138)
T Consensus 165 -------------------------------------------------------------------------------- 164 (386)
T KOG0737|consen 165 -------------------------------------------------------------------------------- 164 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc------------chhhHHH
Q 001150 614 QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS------------DSYSTFK 681 (1138)
Q Consensus 614 ~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~------------~~~~~lk 681 (1138)
|||-+| .+.++.++|.++.+ .+|+||||||||++++.+. +|+..|.
T Consensus 165 -----------------~KWfgE--~eKlv~AvFslAsK---l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD 222 (386)
T KOG0737|consen 165 -----------------SKWFGE--AQKLVKAVFSLASK---LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD 222 (386)
T ss_pred -----------------hhhHHH--HHHHHHHHHhhhhh---cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence 244455 78899999999997 9999999999999997332 3333333
Q ss_pred HHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEe
Q 001150 682 SRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH 761 (1138)
Q Consensus 682 ~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~ 761 (1138)
....+-+.+|+|+||||++-+ +|+|+.||||.+|.|+
T Consensus 223 Gl~s~~~~rVlVlgATNRP~D-------------------------------------------lDeAiiRR~p~rf~V~ 259 (386)
T KOG0737|consen 223 GLSSKDSERVLVLGATNRPFD-------------------------------------------LDEAIIRRLPRRFHVG 259 (386)
T ss_pred cccCCCCceEEEEeCCCCCcc-------------------------------------------HHHHHHHhCcceeeeC
Confidence 323333446999999999853 7999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhH
Q 001150 762 MPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESA 821 (1138)
Q Consensus 762 lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~i 821 (1138)
+|+.++|.+||+..|.. -+...+++..+.+-.|.||+|+||+++|+.+++.+...+
T Consensus 260 lP~~~qR~kILkviLk~----e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 260 LPDAEQRRKILKVILKK----EKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred CCchhhHHHHHHHHhcc----cccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHH
Confidence 99999999999988854 455588999999999999999999999999988775543
No 30
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.6e-29 Score=294.39 Aligned_cols=227 Identities=41% Similarity=0.720 Sum_probs=204.1
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+|++|++++++.|.+.+..++.+++.|...+.. +++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 347899999999999999999999999999999877654 4589999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcc--hHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.|.|+.+..++.+|..|+...|+||||||||.+++.+.... ......+.+..++..++++.. ..+++||+|||.++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999987664322 223445666778888887653 35799999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.++++++| ||+..|.|+.|+.++|.+||+.++.+..+..++++..||..|+||+|+||+++|.+|++.|+++
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998 9999999999999999999999999888888899999999999999999999999999999876
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=302.04 Aligned_cols=227 Identities=41% Similarity=0.639 Sum_probs=209.5
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
...++|.|+.|.++.++.|.+.|.. ++.|..|...+. +-++|+||+||||||||.||+|+|.+.+.||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4578999999999999999999974 888999988776 55599999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC--cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.++|-....++.+|..|++++||||||||||.+...|.. .+.+......+|++++.||++.. +..|++|++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999877642 24455666799999999999973 47899999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
.+|++++| |||+.|.++.|+...|.+|++.++++..+..++++..+|+.|.||+|+||.+++++|+..+.++-
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n 374 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN 374 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999888764
No 32
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=4.3e-28 Score=305.67 Aligned_cols=417 Identities=17% Similarity=0.209 Sum_probs=273.8
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r 716 (1138)
-|..+++.+.. .+++||||||||.+++ |..+..+.|++.| .+|.|.|||+||..++.+
T Consensus 259 rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~------------ 321 (821)
T CHL00095 259 RLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRK------------ 321 (821)
T ss_pred HHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHH------------
Confidence 45556665554 6899999999999986 4567889999999 469999999999887421
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhh
Q 001150 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 796 (1138)
Q Consensus 717 ~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL 796 (1138)
..+.|.+|.+|| +.|.+.+|+.++...|++...+. +...+++....+++
T Consensus 322 --------------------------~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~----~e~~~~v~i~deal 370 (821)
T CHL00095 322 --------------------------HIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSR----YEKHHNLSISDKAL 370 (821)
T ss_pred --------------------------HHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHH----HHHHcCCCCCHHHH
Confidence 223488999999 78999999999999999976654 22333444444444
Q ss_pred hcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCccc-------------ccccchhhhhhHhHHHH--
Q 001150 797 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDAR-------------LVLSCESIQYGIGIFQA-- 861 (1138)
Q Consensus 797 ~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~k-------------l~l~~edl~~al~~lq~-- 861 (1138)
. ...+|...++.++.++.++|+.+-..+....+.....|..... ..+..+++..+......
T Consensus 371 ~----~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (821)
T CHL00095 371 E----AAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREM 446 (821)
T ss_pred H----HHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 4 2357778888899999999988877776666554333321000 00111111111110000
Q ss_pred -HHHhhHhh---------hhcccccCCHHHHHHHHhcCcCCCCCCCccccc--------------ccchHHHHHHHHHHH
Q 001150 862 -IQNESKSL---------KKSLKDVVTENEFEKRLLADVIPPSDIGVTFDD--------------IGALENVKDTLKELV 917 (1138)
Q Consensus 862 -i~~~~k~~---------~~s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdD--------------I~Gle~vk~~L~e~V 917 (1138)
+....... .......++.+++.. +++.+...+...+.-++ +.|++.+.+.+...+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i 525 (821)
T CHL00095 447 EVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAE-IVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAI 525 (821)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCccCHHHHHH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHH
Confidence 00000000 001123477777765 66777666655444333 445555555555444
Q ss_pred hcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc-----cccccchHHHH-----
Q 001150 918 MLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV----- 984 (1138)
Q Consensus 918 ~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~-----s~~iG~~E~~I----- 984 (1138)
..... .-....+|...+||+||+|+|||+||++||+.+ +.++++++++++. ++++|.+.+++
T Consensus 526 ~~~~~-----gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~ 600 (821)
T CHL00095 526 RRARV-----GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG 600 (821)
T ss_pred HHHhh-----cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc
Confidence 31100 001235666679999999999999999999998 4789999998863 34455554444
Q ss_pred HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-------CCCCEEEEEecCCCC-----
Q 001150 985 KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF----- 1052 (1138)
Q Consensus 985 ~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p~----- 1052 (1138)
+.+.+.+++.+.+||+|||||.+ +..+.+.|++.++..... +-.+.+||+|||...
T Consensus 601 ~~l~~~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~ 668 (821)
T CHL00095 601 GQLTEAVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET 668 (821)
T ss_pred chHHHHHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHh
Confidence 35777788888899999999965 355677788887764322 236789999988521
Q ss_pred --------------------------------CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh-------CCCC---
Q 001150 1053 --------------------------------DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS--- 1090 (1138)
Q Consensus 1053 --------------------------------~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k-------~~l~--- 1090 (1138)
.+.|+|++|++.+|.|...+.++..+|++..+.+ .++.
T Consensus 669 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~ 748 (821)
T CHL00095 669 NSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEV 748 (821)
T ss_pred hccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 1336889999999999999999999999887764 2222
Q ss_pred CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1091 PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1091 ~dvdl~~LA~~--teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
.+...+.|+.. ...|..+.|+.+++.-...++.+.+=.
T Consensus 749 ~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~ 788 (821)
T CHL00095 749 TERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLS 788 (821)
T ss_pred CHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 22225566664 225667899999988888777766543
No 33
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=5.1e-29 Score=291.94 Aligned_cols=228 Identities=36% Similarity=0.635 Sum_probs=205.4
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+||+|++..++.|.+.+..++.+++.|...++. |+.++||+||||||||++|+++|++++.+|+.+..+++..
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 346899999999999999999999999999999887754 5589999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC--cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.|.|+.+..++.+|..|+...|+||||||||.++.++.. .+......+++.+|+..++++.. ..++.||+|||+++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIE 333 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChH
Confidence 999999999999999999999999999999999876643 22333445666788888888754 35799999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
.||++++| ||+..|.|+.|+.++|.+||+.++.+..+..++++..++..++||+|+||+++|.+|++.|+++-
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999997 99999999999999999999999999888889999999999999999999999999999998874
No 34
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=2.7e-27 Score=299.38 Aligned_cols=419 Identities=17% Similarity=0.254 Sum_probs=271.1
Q ss_pred HHHHHHHHHHhhcccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcccc
Q 001150 641 LLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 715 (1138)
Q Consensus 641 ~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~ 715 (1138)
..+..+++.+.. ..+|+||||||||.+++ |+.++.+.|+++| .+|.|.|||+||..+++
T Consensus 252 ~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r------------ 315 (852)
T TIGR03346 252 ERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYR------------ 315 (852)
T ss_pred HHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHH------------
Confidence 345555555543 14799999999999984 4467889999999 56999999999988741
Q ss_pred ccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHh
Q 001150 716 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 795 (1138)
Q Consensus 716 r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~v 795 (1138)
..++.|.+|.||| +.|.|++|+.++++.||+....+ +...+++.....+
T Consensus 316 --------------------------~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~----~e~~~~v~~~d~~ 364 (852)
T TIGR03346 316 --------------------------KYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKER----YEVHHGVRITDPA 364 (852)
T ss_pred --------------------------HHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHH----hccccCCCCCHHH
Confidence 1233589999999 78999999999999999876543 6777888777777
Q ss_pred hhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCC--c--ccc--------cccch-------------
Q 001150 796 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--D--ARL--------VLSCE------------- 850 (1138)
Q Consensus 796 L~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~--~--~kl--------~l~~e------------- 850 (1138)
+. .+.+|...++.++.+++++|+.+-..++...+.....|.. . .++ .+..+
T Consensus 365 i~----~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (852)
T TIGR03346 365 IV----AAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLE 440 (852)
T ss_pred HH----HHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 76 4578889999999999999998877766555543322210 0 000 00000
Q ss_pred ----hhhhhHhHHHH--------------HHHh----------------------------------hHhhhh-------
Q 001150 851 ----SIQYGIGIFQA--------------IQNE----------------------------------SKSLKK------- 871 (1138)
Q Consensus 851 ----dl~~al~~lq~--------------i~~~----------------------------------~k~~~~------- 871 (1138)
.+..-+..+.. +... ......
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (852)
T TIGR03346 441 KELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETK 520 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccc
Confidence 00000000000 0000 000000
Q ss_pred --cccccCCHHHHHHHHhcCcCCCCCCCccccc--------------ccchHHHHHHHHHHHhcccCchhhhhcCCCCCC
Q 001150 872 --SLKDVVTENEFEKRLLADVIPPSDIGVTFDD--------------IGALENVKDTLKELVMLPLQRPELFCKGQLTKP 935 (1138)
Q Consensus 872 --s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdD--------------I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP 935 (1138)
-....++.+++.. +++.+...+...+.-++ +.|++.+.+.+...+..... .-....+|
T Consensus 521 ~~l~~~~v~~~~i~~-v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~-----gl~~~~~p 594 (852)
T TIGR03346 521 PRLLREEVTAEEIAE-VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRA-----GLSDPNRP 594 (852)
T ss_pred cccccCCcCHHHHHH-HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhc-----cCCCCCCC
Confidence 0012355555554 55555444443333333 44555555544444432100 00122456
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc-----cccccchHHHH-----HHHHHHHhccCCeEEEEc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~-----s~~iG~~E~~I-----~~lF~~A~k~~PsIIfID 1002 (1138)
...+||+||+|||||++|++||..+ +.+++.++|+++. +.++|.+.+++ +.+....++.+.+|||||
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllD 674 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFD 674 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEe
Confidence 6779999999999999999999988 5789999998763 33445444433 346666777788999999
Q ss_pred CCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccC-------CCCEEEEEecCCCC-----------------------
Q 001150 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------TERILVLAATNRPF----------------------- 1052 (1138)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~-------~~~VLVIaTTN~p~----------------------- 1052 (1138)
|||.+ +..+.+.|++.++.....+ -.+.+||+|||...
T Consensus 675 eieka------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~ 742 (852)
T TIGR03346 675 EVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVL 742 (852)
T ss_pred ccccC------------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHH
Confidence 99965 3556667777775543221 35688999999721
Q ss_pred --CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh-------CCCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHH
Q 001150 1053 --DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS---PDVDFDAIANMTD--GYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1053 --~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k-------~~l~---~dvdl~~LA~~te--GySgaDL~~L~~~Aa 1118 (1138)
.+.|+|+.|++.++.|.+++.++..+|+...+.. .++. .+..++.|+...- .+..+.|+++++...
T Consensus 743 ~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 743 RAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 2457888899999999999999999999887753 2222 2223556666522 567799999999999
Q ss_pred HHHHHHHHHh
Q 001150 1119 HRPIKEILEK 1128 (1138)
Q Consensus 1119 ~~ai~eiie~ 1128 (1138)
..++.+.+-.
T Consensus 823 ~~~l~~~~l~ 832 (852)
T TIGR03346 823 ENPLAKKILA 832 (852)
T ss_pred HHHHHHHHHh
Confidence 8888766543
No 35
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=8.8e-28 Score=302.93 Aligned_cols=417 Identities=19% Similarity=0.250 Sum_probs=262.2
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r 716 (1138)
.+..+++.+.. ..+|+||||||+|.+++ |..+..+.|++.| .+|.+.|||+||..++
T Consensus 258 ~lk~~~~~~~~--~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~-------------- 319 (857)
T PRK10865 258 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEY-------------- 319 (857)
T ss_pred HHHHHHHHHHH--cCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHH--------------
Confidence 34445444332 16899999999999985 5678899999999 5699999999999874
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhh
Q 001150 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 796 (1138)
Q Consensus 717 ~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL 796 (1138)
+..++.|.+|.||| +.|.|.+|+.++++.||+.... .+...+++.....++
T Consensus 320 ------------------------r~~~~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~----~~e~~~~v~~~d~a~ 370 (857)
T PRK10865 320 ------------------------RQYIEKDAALERRF-QKVFVAEPSVEDTIAILRGLKE----RYELHHHVQITDPAI 370 (857)
T ss_pred ------------------------HHHhhhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhh----hhccCCCCCcCHHHH
Confidence 12344699999999 6899999999999999986654 356677777777666
Q ss_pred hcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCc----ccc--------cccchh----------hhh
Q 001150 797 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPD----ARL--------VLSCES----------IQY 854 (1138)
Q Consensus 797 ~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~----~kl--------~l~~ed----------l~~ 854 (1138)
.. +..|...++.+..+++++++.+-..+....+.....|..- ..+ .+..+. +..
T Consensus 371 ~~----a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~ 446 (857)
T PRK10865 371 VA----AATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNE 446 (857)
T ss_pred HH----HHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 53 3567777778888999888877666554444322222100 000 000000 000
Q ss_pred hHhHHH-----------HHH----------HhhHh-------------------------------hh----------hc
Q 001150 855 GIGIFQ-----------AIQ----------NESKS-------------------------------LK----------KS 872 (1138)
Q Consensus 855 al~~lq-----------~i~----------~~~k~-------------------------------~~----------~s 872 (1138)
.+..++ ... .+... +. ..
T Consensus 447 ~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (857)
T PRK10865 447 ELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRL 526 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 000000 000 00000 00 00
Q ss_pred ccccCCHHHHHHHHhcCcCCCCCCCcccc--------------cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCce
Q 001150 873 LKDVVTENEFEKRLLADVIPPSDIGVTFD--------------DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG 938 (1138)
Q Consensus 873 ~k~~v~~~e~e~~ll~~ii~~~~~~vsfd--------------DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~g 938 (1138)
....++.+++.. +++.+..++...+.-+ .++|++.+.+.+...+..... .-....+|...
T Consensus 527 ~~~~v~~~~i~~-vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~-----gl~~~~~p~~~ 600 (857)
T PRK10865 527 LRNKVTDAEIAE-VLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA-----GLSDPNRPIGS 600 (857)
T ss_pred ccCccCHHHHHH-HHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHh-----cccCCCCCCce
Confidence 012355555554 5566655554433333 455666666666665542110 00112355567
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc-----ccccchHHHH-----HHHHHHHhccCCeEEEEcCCc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s-----~~iG~~E~~I-----~~lF~~A~k~~PsIIfIDEID 1005 (1138)
+||+||+|||||++|++||..+ +.+|+.++|+++.. ..+|.+.+++ ..+....+..+.+||||||||
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEie 680 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVE 680 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehh
Confidence 9999999999999999999988 56899999987632 2344443332 234455566677999999999
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-------CCCCEEEEEecCCC-------------------------CC
Q 001150 1006 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP-------------------------FD 1053 (1138)
Q Consensus 1006 ~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p-------------------------~~ 1053 (1138)
.+ ...+.+.|++.++..... +..+.+||+|||.. ..
T Consensus 681 ka------------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (857)
T PRK10865 681 KA------------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHN 748 (857)
T ss_pred hC------------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccc
Confidence 66 244556666666543211 23567889999862 13
Q ss_pred CcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC-------CCCCcccHHHHHHHcC-CC----cHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLSPDVDFDAIANMTD-GY----SGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1054 Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~-------~l~~dvdl~~LA~~te-Gy----SgaDL~~L~~~Aa~~a 1121 (1138)
+.|+|++|++.++.|.+++.++..+|++.++.+. ++...++-..+..+.. || ..+.|+.+++.-...+
T Consensus 749 f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENP 828 (857)
T ss_pred ccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHH
Confidence 5579999999999999999999999998887652 3333333333333322 44 4689999999888887
Q ss_pred HHHHHH
Q 001150 1122 IKEILE 1127 (1138)
Q Consensus 1122 i~eiie 1127 (1138)
+.+.+=
T Consensus 829 la~~iL 834 (857)
T PRK10865 829 LAQQIL 834 (857)
T ss_pred HHHHHH
Confidence 776553
No 36
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=2.3e-28 Score=292.93 Aligned_cols=229 Identities=42% Similarity=0.653 Sum_probs=202.6
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc
Q 001150 892 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1138)
Q Consensus 892 ~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~se 971 (1138)
....+.++|+|++|++++++.+.+.+.. +.+++.|.+.+. .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 3445689999999999999999998875 778888876654 45589999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC
Q 001150 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN 1049 (1138)
+...+.|..+..++.+|..|+..+|+||||||||.++..+... ........++++|+..++++.. ...++||+|||
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn 201 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATN 201 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecC
Confidence 9999999999999999999999999999999999998766432 2234456788999999998754 35799999999
Q ss_pred CCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1050 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1050 ~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.++.||++++| ||+..|.|+.|+.++|.+||+.++....+..++++..+|..+.||+++||+++|++|+..++++
T Consensus 202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK 278 (495)
T ss_pred ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999998 9999999999999999999999998887777889999999999999999999999998877653
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=2.5e-27 Score=273.73 Aligned_cols=229 Identities=43% Similarity=0.725 Sum_probs=202.3
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
..+.++|+|++|++++++.|.+.+..++.+++.|...+.. +++++||+||||||||++|+++|++++.+|+.+...++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 3457899999999999999999999999999999877654 458999999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcc--hHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
..++|+.+..++.+|..++...|+||||||||.+...+.... ........+..++..++++.. ..++.||+|||.+
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence 899999999999999999999999999999999986654321 223345566777777777643 3579999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+.+++++++ ||+..|.|+.|+.++|.+||+.++.+..+..++++..|+..++||+|+||.++|.+|++.|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999998 99999999999999999999999988888888899999999999999999999999999998763
No 38
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=5.8e-27 Score=278.16 Aligned_cols=231 Identities=32% Similarity=0.552 Sum_probs=194.1
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc----------
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------- 963 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~---------- 963 (1138)
..+.++|+||+|++..++.+++.+..++.+++.|...+.. |++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK-PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3457899999999999999999999999999999877654 55899999999999999999999998654
Q ss_pred eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCC
Q 001150 964 FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1039 (1138)
Q Consensus 964 fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~ 1039 (1138)
|+.+..+++.++|.|+.+..++.+|..++.. .|+||||||||.++..+.........+.++++|+..|+++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 6677788899999999999999999998764 6999999999999987765444445577889999999998643
Q ss_pred CCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhC-CCC---------CcccHHHHHHH------
Q 001150 1040 ERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE-DLS---------PDVDFDAIANM------ 1101 (1138)
Q Consensus 1040 ~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~-~l~---------~dvdl~~LA~~------ 1101 (1138)
.+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 679999999999999999999 999999999999999999999998652 221 11223333322
Q ss_pred -----------------------cCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1102 -----------------------TDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1102 -----------------------teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
++.+||+.|+++|..|...|+++.++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~ 460 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT 460 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999998874
No 39
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.9e-28 Score=262.50 Aligned_cols=229 Identities=38% Similarity=0.702 Sum_probs=205.8
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
....++|++++|+..+...|++.+..|+.++++|.+.++ +||.++|||||||+|||.+|+++|..++++|+.+.++.+.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 344689999999999999999999999999999987664 5669999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcc--hHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
++++|++...|++.|..|+.+.|||||+||||.+.+++.... ......+.+.+|+..|+++.. ..+|-+|+|||+|
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrp 281 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRP 281 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCc
Confidence 999999999999999999999999999999999998885532 234555666677778888754 3789999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+.|+++++| |+++.+.+++|+...|..|++.+.+......+++.+++.++.+||.|+|+++.|++|-+.++++-
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE 357 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh
Confidence 999999999 99999999999999999999998888877788999999999999999999999999987766543
No 40
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=6.7e-27 Score=285.35 Aligned_cols=227 Identities=40% Similarity=0.639 Sum_probs=199.4
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
....++|+|++|++++++.|.+.+.. +..++.|...+. .+++++||+||||||||++|+++|.+++.||+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34568999999999999999998765 677877766554 4458999999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC--cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
..+.|.....++.+|..|+...|+||||||||.+...+.. ...+.....+++.|+..++++.. +.+++||+|||++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 8888888888999999999999999999999999866532 22344556788899999998754 3689999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
+.+|++++| ||+..+.|++|+.++|.+||+.++.+..+..++++..+|..+.||+++||+++|++|+..+.++
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999998 9999999999999999999999999877778899999999999999999999999998876544
No 41
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8e-27 Score=274.64 Aligned_cols=224 Identities=41% Similarity=0.683 Sum_probs=209.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~ 976 (1138)
.++ ++++|.......+++.+..++..+..+...+. +|++++|+|||||+|||.+++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 455 78999999999999999999999999987774 5669999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccC-CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc
Q 001150 977 FGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1138)
Q Consensus 977 iG~~E~~I~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld 1055 (1138)
.|+.+.+++.+|+.|.+++ |+||||||||.+++++..... ...++..+++.++++... ..+++||++||+|+.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 678899999999999863 47899999999999999
Q ss_pred HHHHh-cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 001150 1056 EAVIR-RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1056 ~aLlr-RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eii 1126 (1138)
++++| ||+..+.+..|+..+|.+|++.+.++++...+.++..+|..++||+|+||..+|..|++.++++.+
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~ 406 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTL 406 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhH
Confidence 99998 999999999999999999999999999988889999999999999999999999999999999943
No 42
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-26 Score=284.30 Aligned_cols=226 Identities=38% Similarity=0.617 Sum_probs=202.5
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEecc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMS 970 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~s 970 (1138)
..+.|++++|++.++..|++.|..|+.+|+.|....+. |++++|||||||||||..|+++|..+ .+.|+.-+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 46889999999999999999999999999999887765 45999999999999999999999988 5778888889
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 971 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 971 eL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
+..++|+|+.|..++.+|+.|++.+|+|||+||||-|.+.|... ....+..+..+||.+|+|+... ..|+||++||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-qEqih~SIvSTLLaLmdGldsR--gqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-QEQIHASIVSTLLALMDGLDSR--GQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-HHHhhhhHHHHHHHhccCCCCC--CceEEEcccCC
Confidence 99999999999999999999999999999999999998887543 3356678889999999999764 78999999999
Q ss_pred CCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCC-CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1051 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL-SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1051 p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l-~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
++.++++++| ||++.++|++|+.+.|.+|+.....+-.- -...-...||..+.||.|+||+.||.+|++.++++-
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 9999999999 99999999999999999999988765431 133447899999999999999999999999998764
No 43
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=1.5e-25 Score=275.67 Aligned_cols=226 Identities=42% Similarity=0.635 Sum_probs=199.3
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
....+|+|+.|.+..++.+.+.+.. +..+..+...+. ..++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 3456799999999999999998875 455565654433 33478999999999999999999999999999999999998
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC--cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.+.|..+..++.+|..|+..+|+||||||||.+...+.. .+.+.....+++.|+..|+++.. +..++||+|||+++
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~ 301 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 301 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChh
Confidence 899999999999999999999999999999999876643 23344556788999999999854 46899999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.||++++| ||++.+.|+.|+.++|.+||+.++.+..+..++++..+|+.+.||+|+||.++|++|+..|+++
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999988864
No 44
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=7.9e-26 Score=287.99 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=154.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccc----------cc------------------------
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW----------FG------------------------ 978 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~----------iG------------------------ 978 (1138)
.+|++||||+||||||||+||+|||.++++||+.+++++++..+ +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 36779999999999999999999999999999999999987644 11
Q ss_pred -------chHH--HHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc-cCCCCEEEEEec
Q 001150 979 -------EGEK--YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDTERILVLAAT 1048 (1138)
Q Consensus 979 -------~~E~--~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~-~~~~~VLVIaTT 1048 (1138)
..+. .++.+|+.|++.+||||||||||.+...+.. ...+++|+..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 1222 3788999999999999999999999754211 1236788888887642 234689999999
Q ss_pred CCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhh--CCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1049 NRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAK--EDLSP-DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1049 N~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k--~~l~~-dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
|+|+.||||++| |||+.|.|+.|+..+|.+++..++.. ..+.. .+++..+|..|.||+|+||.+||++|+..|++
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999876543 33333 36799999999999999999999999999887
Q ss_pred H
Q 001150 1124 E 1124 (1138)
Q Consensus 1124 e 1124 (1138)
+
T Consensus 1860 q 1860 (2281)
T CHL00206 1860 Q 1860 (2281)
T ss_pred c
Confidence 6
No 45
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=2.4e-25 Score=251.06 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=158.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhc-----cCCeEEEEcCCccc
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSVIFVDEVDSM 1007 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k-----~~PsIIfIDEID~L 1007 (1138)
.+++.+++||||||||||++|+++|++++++|+.++++++.++|+|++|+.++++|..|+. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 4677999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred ccCCCCcchHHHHHHH-HHHHHHHhcCCC----------ccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHH
Q 001150 1008 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAP 1074 (1138)
Q Consensus 1008 ~~~r~~~~~~~al~~i-l~~LL~~Ldgl~----------~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~e 1074 (1138)
++++... .....+++ ..+||.++|+.. .....+|+||+|||+++.|+++++| ||+..+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9887632 33333444 478999888642 1345789999999999999999999 999864 589999
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHH
Q 001150 1075 NRAKILQVILAKEDLSPDVDFDAIANMTDG----YSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1075 eR~eIL~~ll~k~~l~~dvdl~~LA~~teG----ySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+|.+||+.++++.++. ..++..|+..+.| |.|+--..+...+....|.++
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999998776 5788889888877 566655666667666666655
No 46
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=4.7e-25 Score=275.77 Aligned_cols=228 Identities=42% Similarity=0.732 Sum_probs=206.8
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
..++|+||+|++.+++.+.+.+..++.+++.|...++ .++.++|||||||||||+||+++|++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4689999999999999999999999999999987765 455899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld 1055 (1138)
+.|..+..++.+|..+....|+||||||||.+++.+.... .....++.+.|+..++++.. ...++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432 23446778889999988754 36899999999999999
Q ss_pred HHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1056 ~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..++..++||+++||..+|..|++.++++.+.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99998 9999999999999999999999988887778889999999999999999999999999999998865
No 47
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-26 Score=252.78 Aligned_cols=235 Identities=17% Similarity=0.278 Sum_probs=190.4
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
.-+|||++.... |..+..|.|++-.+|+|||++.-. =-..+++|||||||| .++++||||.|++-+|.||=+=.
T Consensus 145 ~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~--GI~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 145 KPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEEL--GIDPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred CCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHc--CCCCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEecc
Confidence 346899998888 999999999999999999986321 235678999999999 89999999999999999986643
Q ss_pred ccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 001150 468 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 547 (1138)
Q Consensus 468 ~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 547 (1138)
| | |-+
T Consensus 219 S-----------E-----------------------lVq----------------------------------------- 223 (406)
T COG1222 219 S-----------E-----------------------LVQ----------------------------------------- 223 (406)
T ss_pred H-----------H-----------------------HHH-----------------------------------------
Confidence 2 1 221
Q ss_pred ccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccc
Q 001150 548 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 627 (1138)
Q Consensus 548 ~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 627 (1138)
||+|-
T Consensus 224 ----------KYiGE----------------------------------------------------------------- 228 (406)
T COG1222 224 ----------KYIGE----------------------------------------------------------------- 228 (406)
T ss_pred ----------HHhcc-----------------------------------------------------------------
Confidence 56661
Q ss_pred ccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc----CCcchhhHHHHHH----hcC-----CCcEEEE
Q 001150 628 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL----EKL-----PDKVIVI 694 (1138)
Q Consensus 628 ~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~----~~~~~~~~lk~~L----~~l-----~g~VvvI 694 (1138)
.-++++.||+++.+ +.|+||||||||.+-+ .+......++-+| ..+ .|+|-||
T Consensus 229 -----------GaRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 229 -----------GARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred -----------chHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 23489999999999 9999999999998665 2223344555544 333 5799999
Q ss_pred eecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 001150 695 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1138)
Q Consensus 695 Gstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~ 774 (1138)
.|||+.|--||| |-|||| |+++|+|++|+.++|.+||++
T Consensus 295 ~ATNR~D~LDPA-------LLRPGR----------------------------------~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 295 MATNRPDILDPA-------LLRPGR----------------------------------FDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred EecCCccccChh-------hcCCCc----------------------------------ccceeecCCCCHHHHHHHHHH
Confidence 999999999999 999999 778999999999999999999
Q ss_pred hhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhh
Q 001150 775 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQY 854 (1138)
Q Consensus 775 ~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~ 854 (1138)
|..+ ..+..++++...+-.+.|++|+||+++|.+|-++. + ++....++++||..
T Consensus 334 Htrk----M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~A-----------i-----------R~~R~~Vt~~DF~~ 387 (406)
T COG1222 334 HTRK----MNLADDVDLELLARLTEGFSGADLKAICTEAGMFA-----------I-----------RERRDEVTMEDFLK 387 (406)
T ss_pred Hhhh----ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHH-----------H-----------HhccCeecHHHHHH
Confidence 9966 56777888888888999999999999999976632 1 34566788899988
Q ss_pred hHhHH
Q 001150 855 GIGIF 859 (1138)
Q Consensus 855 al~~l 859 (1138)
|...+
T Consensus 388 Av~KV 392 (406)
T COG1222 388 AVEKV 392 (406)
T ss_pred HHHHH
Confidence 77644
No 48
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.6e-25 Score=251.73 Aligned_cols=229 Identities=30% Similarity=0.484 Sum_probs=191.8
Q ss_pred ccccc--ccchHHHHHHHH-HHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-eEEEeccccc
Q 001150 898 VTFDD--IGALENVKDTLK-ELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSIT 973 (1138)
Q Consensus 898 vsfdD--I~Gle~vk~~L~-e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-fi~Id~seL~ 973 (1138)
..|.+ |+|++.-...+- ++.....--|+...+.+ .+..+|||||||||||||.+||.|.+.+++. =--++++++.
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lG-i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLG-IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcC-ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 34444 678877765544 44443334455555554 4566899999999999999999999999653 3458899999
Q ss_pred cccccchHHHHHHHHHHHhcc--------CCeEEEEcCCcccccCCCCcch-HHHHHHHHHHHHHHhcCCCccCCCCEEE
Q 001150 974 SKWFGEGEKYVKAVFSLASKI--------APSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~--------~PsIIfIDEID~L~~~r~~~~~-~~al~~il~~LL~~Ldgl~~~~~~~VLV 1044 (1138)
++|+|++|.+++.+|..|..- ...||++||||.++.+|.+-.+ ...+..+.|+||.-|||...- ++++|
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNILV 372 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNILV 372 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEEE
Confidence 999999999999999988532 3569999999999988876544 567889999999999998654 78999
Q ss_pred EEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhC----CCCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1045 LAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE----DLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1045 IaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~----~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
|+-||+++.+|++++| ||...+++.+|++..|.+|++.+..++ .+..++|+++||.+|..|||++|+.|+..|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999988764 3668999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 001150 1119 HRPIKEILEKE 1129 (1138)
Q Consensus 1119 ~~ai~eiie~e 1129 (1138)
..|+.+.+...
T Consensus 453 S~A~nR~vk~~ 463 (744)
T KOG0741|consen 453 SFAMNRHVKAG 463 (744)
T ss_pred HHHHHhhhccC
Confidence 99999998765
No 49
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-22 Score=225.83 Aligned_cols=222 Identities=19% Similarity=0.268 Sum_probs=183.2
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHh
Q 001150 377 EDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAH 456 (1138)
Q Consensus 377 ~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~ 456 (1138)
+.|.+-|+. ++.+|.||+.=.. ++.|.+|.||+..++..|+|++. +-..=++|||.|||| .+++|||||+|-
T Consensus 196 e~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~G---irrPWkgvLm~GPPG--TGKTlLAKAvAT 267 (491)
T KOG0738|consen 196 EALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKG---IRRPWKGVLMVGPPG--TGKTLLAKAVAT 267 (491)
T ss_pred HHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhh---cccccceeeeeCCCC--CcHHHHHHHHHH
Confidence 444444543 4677999997777 99999999999999999999775 567788999999999 899999999999
Q ss_pred HhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 001150 457 YFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMET 536 (1138)
Q Consensus 457 ~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1138)
+.|..|..|-|+.|
T Consensus 268 Ec~tTFFNVSsstl------------------------------------------------------------------ 281 (491)
T KOG0738|consen 268 ECGTTFFNVSSSTL------------------------------------------------------------------ 281 (491)
T ss_pred hhcCeEEEechhhh------------------------------------------------------------------
Confidence 99987777665222
Q ss_pred cccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCC
Q 001150 537 DTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCE 616 (1138)
Q Consensus 537 ~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~ 616 (1138)
T Consensus 282 -------------------------------------------------------------------------------- 281 (491)
T KOG0738|consen 282 -------------------------------------------------------------------------------- 281 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcC----
Q 001150 617 GGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKL---- 687 (1138)
Q Consensus 617 ~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~-----~~~~~~~~lk~~L~~l---- 687 (1138)
.|||-|| .+.+|+.||+.+.. ..|.+|||||||.+.+ +--++...||+.|+-.
T Consensus 282 -------------tSKwRGe--SEKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738|consen 282 -------------TSKWRGE--SEKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred -------------hhhhccc--hHHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc
Confidence 1345556 78899999999999 9999999999999775 2335566778777211
Q ss_pred ------CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEe
Q 001150 688 ------PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH 761 (1138)
Q Consensus 688 ------~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~ 761 (1138)
+.-|+|+.|||.+-+ +|+||.|||+++|+|+
T Consensus 344 ~~t~e~~k~VmVLAATN~PWd-------------------------------------------iDEAlrRRlEKRIyIP 380 (491)
T KOG0738|consen 344 QGTLENSKVVMVLAATNFPWD-------------------------------------------IDEALRRRLEKRIYIP 380 (491)
T ss_pred ccccccceeEEEEeccCCCcc-------------------------------------------hHHHHHHHHhhheeee
Confidence 124999999999974 7888999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccc
Q 001150 762 MPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 817 (1138)
Q Consensus 762 lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls 817 (1138)
||+.++|...+++.|.. +...+.+++...+-...||+|+|+..+|+++.+..
T Consensus 381 LP~~~~R~~Li~~~l~~----~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~ 432 (491)
T KOG0738|consen 381 LPDAEARSALIKILLRS----VELDDPVNLEDLAERSEGYSGADITNVCREASMMA 432 (491)
T ss_pred CCCHHHHHHHHHHhhcc----ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 99999999999988854 77788888888888899999999999999887643
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-20 Score=224.11 Aligned_cols=286 Identities=18% Similarity=0.246 Sum_probs=216.5
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCC
Q 001150 353 RNEWRRDSQPASTLGMSLRCAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVN 432 (1138)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~ 432 (1138)
.++|+....---...+..+-...++++-..|=-|+==+|+||+.... |.+|..+.+..-.+|+|+++ |+++|-.-|
T Consensus 631 ~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGL--eevK~eIldTIqlPL~hpeL--fssglrkRS 706 (953)
T KOG0736|consen 631 EGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGL--EEVKTEILDTIQLPLKHPEL--FSSGLRKRS 706 (953)
T ss_pred ccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCH--HHHHHHHHHHhcCcccChhh--hhccccccc
Confidence 44454333333344566777788888999999999999999999988 99999999999999999999 566676544
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCC
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPV 512 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~ 512 (1138)
+|||+|||| ++++.||||.|-+|...||.+-- +|. .-
T Consensus 707 -GILLYGPPG--TGKTLlAKAVATEcsL~FlSVKG-----------PEL-----------------------LN------ 743 (953)
T KOG0736|consen 707 -GILLYGPPG--TGKTLLAKAVATECSLNFLSVKG-----------PEL-----------------------LN------ 743 (953)
T ss_pred -eeEEECCCC--CchHHHHHHHHhhceeeEEeecC-----------HHH-----------------------HH------
Confidence 799999999 99999999999999999887653 232 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 001150 513 SESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDN 592 (1138)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n 592 (1138)
.|||
T Consensus 744 ---------------------------------------------MYVG------------------------------- 747 (953)
T KOG0736|consen 744 ---------------------------------------------MYVG------------------------------- 747 (953)
T ss_pred ---------------------------------------------HHhc-------------------------------
Confidence 3555
Q ss_pred CCCcceeeccCCCCCCCCCCCCCCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc-
Q 001150 593 PSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA- 671 (1138)
Q Consensus 593 ~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~- 671 (1138)
+ .+.-++.+||-+.+ ..||||||||+|.+..
T Consensus 748 -------------------------------------------q--SE~NVR~VFerAR~---A~PCVIFFDELDSlAP~ 779 (953)
T KOG0736|consen 748 -------------------------------------------Q--SEENVREVFERARS---AAPCVIFFDELDSLAPN 779 (953)
T ss_pred -------------------------------------------c--hHHHHHHHHHHhhc---cCCeEEEeccccccCcc
Confidence 1 34468999999999 9999999999999874
Q ss_pred -----CCcchhhHHHHHH----hcC----CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 001150 672 -----GNSDSYSTFKSRL----EKL----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 738 (1138)
Q Consensus 672 -----~~~~~~~~lk~~L----~~l----~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~ 738 (1138)
.+-..++.+.+.| +.+ ...|+|||||||+|=.||+ |-||||
T Consensus 780 RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpA-------LLRPGR------------------- 833 (953)
T KOG0736|consen 780 RGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPA-------LLRPGR------------------- 833 (953)
T ss_pred CCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChh-------hcCCCc-------------------
Confidence 3445666666666 333 3589999999999999999 899999
Q ss_pred cCCCchHHHHHHhhhCCCeEEEeCC-CHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhc-CCCCcccccchhcccccc
Q 001150 739 RGKEIPKATKLLTKLFPNKVTIHMP-QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGR-SGLECEGLETLCIRDQSL 816 (1138)
Q Consensus 739 ~~~~~~~~d~~l~rRF~~~I~I~lP-d~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t-~glsgaDL~~Lci~a~~l 816 (1138)
|++=++++++ +.|.++.+|+.+..+ +++..+++..+.+-.+ -++.|+||-++|-+|.+-
T Consensus 834 ---------------FDKLvyvG~~~d~esk~~vL~AlTrk----FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~ 894 (953)
T KOG0736|consen 834 ---------------FDKLVYVGPNEDAESKLRVLEALTRK----FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLA 894 (953)
T ss_pred ---------------cceeEEecCCccHHHHHHHHHHHHHH----ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHH
Confidence 8889999999 578889999988755 7788889888888777 689999999999976551
Q ss_pred chhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHH
Q 001150 817 TNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 859 (1138)
Q Consensus 817 s~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~l 859 (1138)
+|...|..-..-- +. .....+..+.+.++||..+.+.+
T Consensus 895 ---AikR~i~~ie~g~-~~-~~e~~~~~v~V~~eDflks~~~l 932 (953)
T KOG0736|consen 895 ---AIKRTIHDIESGT-IS-EEEQESSSVRVTMEDFLKSAKRL 932 (953)
T ss_pred ---HHHHHHHHhhhcc-cc-ccccCCceEEEEHHHHHHHHHhc
Confidence 1111111111000 00 01114577888999988776644
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.9e-20 Score=223.19 Aligned_cols=231 Identities=19% Similarity=0.216 Sum_probs=180.7
Q ss_pred HHHHHHHHHhc----ccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHH
Q 001150 372 CAVFREDILAG----ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQ 447 (1138)
Q Consensus 372 ~~~~~~~~~~~----vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yq 447 (1138)
.+-|++.|.+. .+.-.+-.|+|++...+ +..|..|.+++-..|++++.. ..-....+++|||+|||| +++
T Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~~--~~~~~~~~~giLl~GpPG--tGK 289 (494)
T COG0464 216 EDDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPELF--RKLGLRPPKGVLLYGPPG--TGK 289 (494)
T ss_pred HHHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHHH--HhcCCCCCCeeEEECCCC--CCH
Confidence 34556666553 44456777888887776 999999999999999999983 332345556999999999 999
Q ss_pred HHHHHHHHhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCC
Q 001150 448 EMLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQG 527 (1138)
Q Consensus 448 e~LakALA~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 527 (1138)
+|||||+|++.+++|+.++.+++
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l--------------------------------------------------------- 312 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSEL--------------------------------------------------------- 312 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHH---------------------------------------------------------
Confidence 99999999999999999987322
Q ss_pred CCCCCcccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCC
Q 001150 528 PESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPD 607 (1138)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~ 607 (1138)
T Consensus 313 -------------------------------------------------------------------------------- 312 (494)
T COG0464 313 -------------------------------------------------------------------------------- 312 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--------chhhH
Q 001150 608 GVDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYST 679 (1138)
Q Consensus 608 ~~~l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--------~~~~~ 679 (1138)
+++|+|| .+..|+.+|+.+.. ..|+||||||||+++.++. ++.+.
T Consensus 313 ----------------------~sk~vGe--sek~ir~~F~~A~~---~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~ 365 (494)
T COG0464 313 ----------------------LSKWVGE--SEKNIRELFEKARK---LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQ 365 (494)
T ss_pred ----------------------hccccch--HHHHHHHHHHHHHc---CCCcEEEEEchhhhhccCCCCCchHHHHHHHH
Confidence 2456677 78899999999997 9999999999999997332 33344
Q ss_pred HHHHHhcC--CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCe
Q 001150 680 FKSRLEKL--PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNK 757 (1138)
Q Consensus 680 lk~~L~~l--~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~ 757 (1138)
|...++.+ ..+|+|||+||+++..||+ +.|||| |+..
T Consensus 366 lL~~~d~~e~~~~v~vi~aTN~p~~ld~a-------~lR~gR----------------------------------fd~~ 404 (494)
T COG0464 366 LLTELDGIEKAEGVLVIAATNRPDDLDPA-------LLRPGR----------------------------------FDRL 404 (494)
T ss_pred HHHHhcCCCccCceEEEecCCCccccCHh-------hcccCc----------------------------------cceE
Confidence 44444222 3479999999999988888 788888 8899
Q ss_pred EEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 758 VTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 758 I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
|+|++|+.++|++||+.++...... +..+++....+-.+.||+|+||..+|.++.+
T Consensus 405 i~v~~pd~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~ 460 (494)
T COG0464 405 IYVPLPDLEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEGYSGADIAALVREAAL 460 (494)
T ss_pred eecCCCCHHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999998753322 2345555555556789999999999987655
No 52
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-20 Score=217.69 Aligned_cols=218 Identities=22% Similarity=0.283 Sum_probs=172.7
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
=+|.|++||.. +..|..|.+++..++-.++.+. +|.+.-+.|||.|||| -+++||+||+|-+.+|.|..+-.+
T Consensus 148 ~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 148 RNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred CcccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHH
Confidence 35789999999 9999999999999999998843 6888999999999999 899999999999999998766543
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 001150 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1138)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1138)
.|+
T Consensus 221 sLt----------------------------------------------------------------------------- 223 (428)
T KOG0740|consen 221 SLT----------------------------------------------------------------------------- 223 (428)
T ss_pred Hhh-----------------------------------------------------------------------------
Confidence 322
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 001150 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1138)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1138)
T Consensus 224 -------------------------------------------------------------------------------- 223 (428)
T KOG0740|consen 224 -------------------------------------------------------------------------------- 223 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc------------chhhHHHHHHhcCCCcEEEEee
Q 001150 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS------------DSYSTFKSRLEKLPDKVIVIGS 696 (1138)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~------------~~~~~lk~~L~~l~g~VvvIGs 696 (1138)
+||+|| .+.+|.+||+|+.. .+|.|+||||||.+|..+. +|...+.....+...+|+||||
T Consensus 224 --sK~~Ge--~eK~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 224 --SKYVGE--SEKLVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred --hhccCh--HHHHHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 356666 57899999999999 9999999999999997221 2222222222344669999999
Q ss_pred cccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 697 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 697 tt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
||++.. +|+++.|||...++|++|+.++|..+|+..|
T Consensus 297 TN~P~e-------------------------------------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll 333 (428)
T KOG0740|consen 297 TNRPWE-------------------------------------------LDEAARRRFVKRLYIPLPDYETRSLLWKQLL 333 (428)
T ss_pred CCCchH-------------------------------------------HHHHHHHHhhceeeecCCCHHHHHHHHHHHH
Confidence 999973 6888889999999999999999999999998
Q ss_pred hhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHH
Q 001150 777 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEK 823 (1138)
Q Consensus 777 ~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~ 823 (1138)
.+. .+.....++..+ |-.+-||+|.|+.++|.++++.+...+..
T Consensus 334 ~~~-~~~l~~~d~~~l--~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 334 KEQ-PNGLSDLDISLL--AKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred HhC-CCCccHHHHHHH--HHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 774 122222344444 44556999999999999998866554433
No 53
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.5e-20 Score=202.27 Aligned_cols=223 Identities=18% Similarity=0.235 Sum_probs=172.8
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHH
Q 001150 375 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 454 (1138)
Q Consensus 375 ~~~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakAL 454 (1138)
++..|...|| -+.=+|-|++.-.. |..|.+|-+|++.++|.|.++...+ ..=++|||+|||| .++-.||||.
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGkR---~PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGKR---KPWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCCC---CcceeEEEeCCCC--CcHHHHHHHH
Confidence 3444555555 46778999998888 9999999999999999999864433 2346899999999 8999999999
Q ss_pred HhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001150 455 AHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKM 534 (1138)
Q Consensus 455 A~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1138)
|-+-+..|..+.|
T Consensus 187 ATEAnSTFFSvSS------------------------------------------------------------------- 199 (439)
T KOG0739|consen 187 ATEANSTFFSVSS------------------------------------------------------------------- 199 (439)
T ss_pred HhhcCCceEEeeh-------------------------------------------------------------------
Confidence 9876644443332
Q ss_pred cccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCC
Q 001150 535 ETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQ 614 (1138)
Q Consensus 535 ~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~ 614 (1138)
T Consensus 200 -------------------------------------------------------------------------------- 199 (439)
T KOG0739|consen 200 -------------------------------------------------------------------------------- 199 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc----CCcchhhHHHHHHh-----
Q 001150 615 CEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLE----- 685 (1138)
Q Consensus 615 c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~----~~~~~~~~lk~~L~----- 685 (1138)
.|-.|||.|| .+.++..||+.+.+ ..|.||||||||.+.+ +-.++...+|..|+
T Consensus 200 ------------SDLvSKWmGE--SEkLVknLFemARe---~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 200 ------------SDLVSKWMGE--SEKLVKNLFEMARE---NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG 262 (439)
T ss_pred ------------HHHHHHHhcc--HHHHHHHHHHHHHh---cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc
Confidence 2334789999 99999999999999 9999999999996544 45667777777662
Q ss_pred --cCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCC
Q 001150 686 --KLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMP 763 (1138)
Q Consensus 686 --~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lP 763 (1138)
.-...|+|+||||.+-. +|.||.|||+++|+|+||
T Consensus 263 VG~d~~gvLVLgATNiPw~-------------------------------------------LDsAIRRRFekRIYIPLP 299 (439)
T KOG0739|consen 263 VGNDNDGVLVLGATNIPWV-------------------------------------------LDSAIRRRFEKRIYIPLP 299 (439)
T ss_pred cccCCCceEEEecCCCchh-------------------------------------------HHHHHHHHhhcceeccCC
Confidence 11458999999998852 589999999999999999
Q ss_pred CHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 764 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 764 d~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
+..+|...++.++-.--+.+..+ ++-+.+-.+-||+|+|+.-+.+++.+
T Consensus 300 e~~AR~~MF~lhlG~tp~~LT~~---d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 300 EAHARARMFKLHLGDTPHVLTEQ---DFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred cHHHhhhhheeccCCCccccchh---hHHHHHhhcCCCCcCceEEEehhhhh
Confidence 99999999998875533333322 23344567889999999776665544
No 54
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.5e-19 Score=207.93 Aligned_cols=214 Identities=23% Similarity=0.324 Sum_probs=165.1
Q ss_pred HhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 001150 380 LAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1138)
Q Consensus 380 ~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1138)
...|.+-+.++|+|++.=.- |..|..|-|-+- .||.|+ ||++==-..+++|||.|||| .+++|||||.|-+-|
T Consensus 290 ~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 290 DSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhcccC
Confidence 36677778889999996666 999999999886 577765 35554456789999999999 899999999999999
Q ss_pred CeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 001150 460 AKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTT 539 (1138)
Q Consensus 460 a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1138)
++|.-- .| . |+ +.
T Consensus 363 VPFF~~-----sG-S-----EF-----------------------dE--------------------------------- 375 (752)
T KOG0734|consen 363 VPFFYA-----SG-S-----EF-----------------------DE--------------------------------- 375 (752)
T ss_pred CCeEec-----cc-c-----ch-----------------------hh---------------------------------
Confidence 987421 12 0 11 00
Q ss_pred ccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCc
Q 001150 540 LTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGH 619 (1138)
Q Consensus 540 ~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~ 619 (1138)
-|||
T Consensus 376 ------------------m~VG---------------------------------------------------------- 379 (752)
T KOG0734|consen 376 ------------------MFVG---------------------------------------------------------- 379 (752)
T ss_pred ------------------hhhc----------------------------------------------------------
Confidence 1233
Q ss_pred ccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc--CCcchhhHHHHHH----hcC-----C
Q 001150 620 GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--GNSDSYSTFKSRL----EKL-----P 688 (1138)
Q Consensus 620 ~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~--~~~~~~~~lk~~L----~~l-----~ 688 (1138)
+|| +-|+.||..+++ ..||||||||||.+=+ ...+.+ --+.+| ..+ +
T Consensus 380 -----vGA-------------rRVRdLF~aAk~---~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 380 -----VGA-------------RRVRDLFAAAKA---RAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred -----ccH-------------HHHHHHHHHHHh---cCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC
Confidence 222 248999999999 9999999999998433 222222 222223 222 4
Q ss_pred CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 001150 689 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 768 (1138)
Q Consensus 689 g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~r 768 (1138)
..|+||||||++|+-|+| |.|||| |+++|.|+.||..+|
T Consensus 438 eGiIvigATNfpe~LD~A-------L~RPGR----------------------------------FD~~v~Vp~PDv~GR 476 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKA-------LTRPGR----------------------------------FDRHVTVPLPDVRGR 476 (752)
T ss_pred CceEEEeccCChhhhhHH-------hcCCCc----------------------------------cceeEecCCCCcccH
Confidence 589999999999999999 999999 889999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchh
Q 001150 769 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLC 810 (1138)
Q Consensus 769 l~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lc 810 (1138)
.+||+.+|.+ +....+++....+-.+.|++|+||..+.
T Consensus 477 ~eIL~~yl~k----i~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 477 TEILKLYLSK----IPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred HHHHHHHHhc----CCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 9999998855 6777788888888999999999996653
No 55
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.80 E-value=6.4e-19 Score=209.92 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHH
Q 001150 369 SLRCAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQE 448 (1138)
Q Consensus 369 ~~~~~~~~~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe 448 (1138)
..++|.+++. +++.-...+++|++...+ ++.|..|....-.+.. ....|+ + ..+++|||+|||| ++++
T Consensus 206 ~~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKT 273 (489)
T CHL00195 206 EEKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKS 273 (489)
T ss_pred HHHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHH
Confidence 3445555443 466666678899998887 9999988864432211 112233 2 5678999999999 9999
Q ss_pred HHHHHHHhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 001150 449 MLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGP 528 (1138)
Q Consensus 449 ~LakALA~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1138)
+||||+|++++++|+.+|.+.|++
T Consensus 274 llAkaiA~e~~~~~~~l~~~~l~~-------------------------------------------------------- 297 (489)
T CHL00195 274 LTAKAIANDWQLPLLRLDVGKLFG-------------------------------------------------------- 297 (489)
T ss_pred HHHHHHHHHhCCCEEEEEhHHhcc--------------------------------------------------------
Confidence 999999999999999999855544
Q ss_pred CCCCcccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCC
Q 001150 529 ESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDG 608 (1138)
Q Consensus 529 ~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~ 608 (1138)
T Consensus 298 -------------------------------------------------------------------------------- 297 (489)
T CHL00195 298 -------------------------------------------------------------------------------- 297 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc-----chhhH----
Q 001150 609 VDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----DSYST---- 679 (1138)
Q Consensus 609 ~~l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~-----~~~~~---- 679 (1138)
+|+|+ .+..++.+|+.+.. ..|+||||||||+++.+.. ...+.
T Consensus 298 -----------------------~~vGe--se~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~ 349 (489)
T CHL00195 298 -----------------------GIVGE--SESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLAT 349 (489)
T ss_pred -----------------------cccCh--HHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHH
Confidence 12222 34468888998888 8999999999999886321 12222
Q ss_pred HHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEE
Q 001150 680 FKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVT 759 (1138)
Q Consensus 680 lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~ 759 (1138)
|...|.....+|+|||+||+++..||+ |.|+|| |+..|+
T Consensus 350 lL~~l~~~~~~V~vIaTTN~~~~Ld~a-------llR~GR----------------------------------FD~~i~ 388 (489)
T CHL00195 350 FITWLSEKKSPVFVVATANNIDLLPLE-------ILRKGR----------------------------------FDEIFF 388 (489)
T ss_pred HHHHHhcCCCceEEEEecCChhhCCHH-------HhCCCc----------------------------------CCeEEE
Confidence 222333346789999999999988888 778888 888999
Q ss_pred EeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 760 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 760 I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
|++|+.++|.+||+.++.+.... ...+++....+-.+.||+|+||+.+|.++..
T Consensus 389 v~lP~~~eR~~Il~~~l~~~~~~--~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 389 LDLPSLEEREKIFKIHLQKFRPK--SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred eCCcCHHHHHHHHHHHHhhcCCC--cccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999998763221 1235666677778899999999999887654
No 56
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.79 E-value=4.4e-19 Score=207.01 Aligned_cols=236 Identities=14% Similarity=0.224 Sum_probs=178.2
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCccccc-ccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 001150 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1138)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1138)
-+.-+|+|+++..+ |..|..|.+++-.+|+++++.+ ++ + ..+++|||+|||| +++++||||+|++.++.++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCC--CCHHHHHHHHHHhcCCCEEE
Confidence 35678999999988 9999999999999999998753 33 2 4578999999999 99999999999999988877
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 001150 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1138)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1138)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 65321110
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 001150 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1138)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1138)
T Consensus 218 -------------------------------------------------------------------------------- 217 (398)
T PTZ00454 218 -------------------------------------------------------------------------------- 217 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--------chhhHHHHHHhcC-----CCcE
Q 001150 625 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL-----PDKV 691 (1138)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--------~~~~~lk~~L~~l-----~g~V 691 (1138)
+|+++ ....++.+|+.+.. .+|+||||||||.++..+. +....+...|..+ .++|
T Consensus 218 -------k~~ge--~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 218 -------KYLGE--GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred -------Hhcch--hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 11122 23457888888887 8999999999999875321 1222333333322 3589
Q ss_pred EEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHH
Q 001150 692 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 771 (1138)
Q Consensus 692 vvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~I 771 (1138)
+||++||+++.+||+ |.|||| |+.+|+|++|+.++|..|
T Consensus 286 ~VI~aTN~~d~LDpA-------llR~GR----------------------------------fd~~I~~~~P~~~~R~~I 324 (398)
T PTZ00454 286 KVIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLI 324 (398)
T ss_pred EEEEecCCchhCCHH-------HcCCCc----------------------------------ccEEEEeCCcCHHHHHHH
Confidence 999999999988888 778888 888999999999999999
Q ss_pred HHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchh
Q 001150 772 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCES 851 (1138)
Q Consensus 772 Lk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~ed 851 (1138)
|+.++.+ .....+++..+.+..+.||+|+||..+|.++.+. ++. .....+..++
T Consensus 325 l~~~~~~----~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~---------------A~r-------~~~~~i~~~d 378 (398)
T PTZ00454 325 FQTITSK----MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQ---------------AVR-------KNRYVILPKD 378 (398)
T ss_pred HHHHHhc----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHH---------------HHH-------cCCCccCHHH
Confidence 9988754 3445567777778888999999999999876541 111 1234678888
Q ss_pred hhhhHhHH
Q 001150 852 IQYGIGIF 859 (1138)
Q Consensus 852 l~~al~~l 859 (1138)
|..|+..+
T Consensus 379 f~~A~~~v 386 (398)
T PTZ00454 379 FEKGYKTV 386 (398)
T ss_pred HHHHHHHH
Confidence 88877644
No 57
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=9.8e-18 Score=207.34 Aligned_cols=366 Identities=20% Similarity=0.196 Sum_probs=225.0
Q ss_pred CCCeEEEEcchhhhhc-C----CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCC
Q 001150 656 SCPFILFMKDAEKSIA-G----NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 730 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~-~----~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~ 730 (1138)
.+.+||||||+|-+++ | .+++.++|+++| .+|.+-+||+||..+|++
T Consensus 279 ~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L--~rg~l~~IGatT~e~Y~k-------------------------- 330 (898)
T KOG1051|consen 279 GGGVILFLGELHWLVGSGSNYGAIDAANLLKPLL--ARGGLWCIGATTLETYRK-------------------------- 330 (898)
T ss_pred CCcEEEEecceeeeecCCCcchHHHHHHhhHHHH--hcCCeEEEecccHHHHHH--------------------------
Confidence 6899999999998776 3 458999999999 558899999999887632
Q ss_pred CccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchh
Q 001150 731 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLC 810 (1138)
Q Consensus 731 ~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lc 810 (1138)
+.+-|.+|.||| +.+.|+.|..+....||.....+ +..+|++.....++ ...+.+...+
T Consensus 331 ------------~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~----~e~~hg~~~s~~a~----~~a~~~s~~~ 389 (898)
T KOG1051|consen 331 ------------CIEKDPALERRW-QLVLVPIPSVENLSLILPGLSER----YEVHHGVRISDESL----FSAAQLSARY 389 (898)
T ss_pred ------------HHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhh----hccccCCccccccc----ccccchhhhh
Confidence 223488899999 89999999999988888876544 66667666655433 3456667777
Q ss_pred ccccccchhhHHHHHHHHHhhhhhcCCCCC--CcccccccchhhhhhHhHHHHHHH------------------------
Q 001150 811 IRDQSLTNESAEKIVGWALSHHLMQNPEAD--PDARLVLSCESIQYGIGIFQAIQN------------------------ 864 (1138)
Q Consensus 811 i~a~~ls~~~ie~iV~~A~~~~l~~~~~~~--~~~kl~l~~edl~~al~~lq~i~~------------------------ 864 (1138)
+....|+...++.+-..+....+.....|. ......... ++..+..+++-..
T Consensus 390 ~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~--~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~ 467 (898)
T KOG1051|consen 390 ITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIK--LQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSA 467 (898)
T ss_pred cccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhh--hHHHHHHHHHhhhhhhccccccccccccccccccchh
Confidence 777777766655554444444333222221 000000000 1111111111000
Q ss_pred ---hhHhhhhcc---cccCCHHH---------------------------------------HHHHHhcCcCCCCCCCcc
Q 001150 865 ---ESKSLKKSL---KDVVTENE---------------------------------------FEKRLLADVIPPSDIGVT 899 (1138)
Q Consensus 865 ---~~k~~~~s~---k~~v~~~e---------------------------------------~e~~ll~~ii~~~~~~vs 899 (1138)
..+.....+ +....... +. .+...+...+....+
T Consensus 468 ~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~-~~~s~~tgip~~~~~ 546 (898)
T KOG1051|consen 468 SVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDIS-EVVSRWTGIPVDRLA 546 (898)
T ss_pred hhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchh-hhhhhhcCCchhhhh
Confidence 000000000 00000000 00 011111111111111
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhc------CCCCC--CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCK------GQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~------~~~~r--P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id 968 (1138)
-.+-..+..+.+.|.+.|.+|..+...... .+..+ |...+||.||.|+|||.||++||..+ .-.|++++
T Consensus 547 ~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD 626 (898)
T KOG1051|consen 547 EAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD 626 (898)
T ss_pred hhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec
Confidence 111123334445555666555544332221 22333 67789999999999999999999999 56899999
Q ss_pred cccc--ccccccchHHH-----HHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCC--
Q 001150 969 MSSI--TSKWFGEGEKY-----VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT-- 1039 (1138)
Q Consensus 969 ~seL--~s~~iG~~E~~-----I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~-- 1039 (1138)
|+++ +++.+|.+.+| ..++++..++.+.+||+||||| .++..+++.|++.+|.....+.
T Consensus 627 mse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE------------kAh~~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 627 MSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE------------KAHPDVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred hhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh------------hcCHHHHHHHHHHHhcCccccCCC
Confidence 9975 33455554443 4689999999999999999999 5677888999999988776644
Q ss_pred -----CCEEEEEecCCC----------------------------------------CCCcHHHHhcCCceEEecCCCHH
Q 001150 1040 -----ERILVLAATNRP----------------------------------------FDLDEAVIRRLPRRLMVNLPDAP 1074 (1138)
Q Consensus 1040 -----~~VLVIaTTN~p----------------------------------------~~Ld~aLlrRFd~~I~v~lPd~e 1074 (1138)
.+++||+|+|.- ..+.++|++|.+..+.+...+.+
T Consensus 695 r~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~ 774 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRD 774 (898)
T ss_pred cEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchh
Confidence 579999997651 12335666677777777777877
Q ss_pred HHHHHHHHHHh
Q 001150 1075 NRAKILQVILA 1085 (1138)
Q Consensus 1075 eR~eIL~~ll~ 1085 (1138)
+..++....+.
T Consensus 775 ~~~~i~~~~~~ 785 (898)
T KOG1051|consen 775 ELIEIVNKQLT 785 (898)
T ss_pred hHhhhhhhHHH
Confidence 77766665543
No 58
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=5.4e-18 Score=190.35 Aligned_cols=218 Identities=18% Similarity=0.262 Sum_probs=161.2
Q ss_pred ccccchHHHHHHHHHHHhcccCchhhhhcCCCCC--CCceEEEECCCCCCHHHHHHHHHHHh-------CCceEEEeccc
Q 001150 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 971 (1138)
Q Consensus 901 dDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~r--P~~gILL~GPPGTGKT~LArALA~el-------g~~fi~Id~se 971 (1138)
.+++|++++|+++.+++.+.. ..+...+.+... +..++||+||||||||++|+++|+.+ ..+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 378999999999999886532 233333333332 33469999999999999999999886 23689999999
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
+.+.++|..+..+..+|..+. ++||||||++.|...+. .......+.+.|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~---~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN---ERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC---ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999999988877778887764 48999999999864321 1123355667777777653 2457787877642
Q ss_pred -----CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHH----c--CCCc-HHHHHHHHHHHH
Q 001150 1052 -----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANM----T--DGYS-GSDLKNLCVTAA 1118 (1138)
Q Consensus 1052 -----~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~----t--eGyS-gaDL~~L~~~Aa 1118 (1138)
..++|++++||+.+|.|+.++.+++.+|++.++.+.+..- +.....+... . ..|. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 2456999999999999999999999999999998765432 2223333332 1 3344 899999999999
Q ss_pred HHHHHHHHHhh
Q 001150 1119 HRPIKEILEKE 1129 (1138)
Q Consensus 1119 ~~ai~eiie~e 1129 (1138)
.+...+++...
T Consensus 252 ~~~~~r~~~~~ 262 (287)
T CHL00181 252 MRQANRIFESG 262 (287)
T ss_pred HHHHHHHHcCC
Confidence 99999998763
No 59
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=5.5e-18 Score=187.64 Aligned_cols=221 Identities=16% Similarity=0.233 Sum_probs=161.4
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCC-CCCCCceEEEECCCCCCHHHHHHHHHHHh-------CCceEEEecc
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQ-LTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 970 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~-~~rP~~gILL~GPPGTGKT~LArALA~el-------g~~fi~Id~s 970 (1138)
.+++++|++++|+.+++.+.+...+......+. ......++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 357899999999999998876544322222221 11223579999999999999999999875 3478899999
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 971 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 971 eL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
++.+.++|+.+..+..+|..+. ++||||||+|.|..... .......++.|+..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999988899998775 48999999999853211 122344566677777654 245666666543
Q ss_pred C-----CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc-------C--CCcHHHHHHHHH
Q 001150 1051 P-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT-------D--GYSGSDLKNLCV 1115 (1138)
Q Consensus 1051 p-----~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~t-------e--GySgaDL~~L~~ 1115 (1138)
. ..+++++++||+..+.|+.++.+++.+|++.++...+.. ++..+..|+... . .-+++.++++++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 247889999999899999999999999999999876543 222244443321 1 236789999999
Q ss_pred HHHHHHHHHHHHhhh
Q 001150 1116 TAAHRPIKEILEKEK 1130 (1138)
Q Consensus 1116 ~Aa~~ai~eiie~ek 1130 (1138)
.|..+...+++....
T Consensus 233 ~a~~~~~~r~~~~~~ 247 (261)
T TIGR02881 233 KAIRRQAVRLLDKSD 247 (261)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999888886643
No 60
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=1.1e-18 Score=203.70 Aligned_cols=236 Identities=19% Similarity=0.289 Sum_probs=176.7
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCccccc-ccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 001150 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1138)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1138)
+..+++|++++.+ |..+..|.+.+..+|+++++.+ ++ ...+++|||+|||| +++++||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4457899999888 9999999999999999998753 32 24457899999999 999999999999999988877
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 001150 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1138)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1138)
+.+.|..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 6533321
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 001150 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1138)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1138)
+|+
T Consensus 204 ------------~~~----------------------------------------------------------------- 206 (389)
T PRK03992 204 ------------KFI----------------------------------------------------------------- 206 (389)
T ss_pred ------------hhc-----------------------------------------------------------------
Confidence 111
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cchhhHHHHHHhcC-----CCcEE
Q 001150 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVI 692 (1138)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~~~~~lk~~L~~l-----~g~Vv 692 (1138)
++ ....++.+|+.+.. ..|.||||||||.++..+ .+....+...|..+ .++|+
T Consensus 207 ---------g~--~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 207 ---------GE--GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred ---------cc--hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 11 23357888988887 899999999999987521 12222233333222 35899
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 001150 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1138)
Q Consensus 693 vIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~IL 772 (1138)
|||+||+.+.+|++ |.|||| |+..|+|++|+.++|.+||
T Consensus 273 VI~aTn~~~~ld~a-------llRpgR----------------------------------fd~~I~v~~P~~~~R~~Il 311 (389)
T PRK03992 273 IIAATNRIDILDPA-------ILRPGR----------------------------------FDRIIEVPLPDEEGRLEIL 311 (389)
T ss_pred EEEecCChhhCCHH-------HcCCcc----------------------------------CceEEEECCCCHHHHHHHH
Confidence 99999999888888 778888 8889999999999999999
Q ss_pred HHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhh
Q 001150 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESI 852 (1138)
Q Consensus 773 k~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl 852 (1138)
+.++.. +....+++....+..+.||+|+||..+|.++.+.. +.. ....++.++|
T Consensus 312 ~~~~~~----~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a---------------~~~-------~~~~i~~~d~ 365 (389)
T PRK03992 312 KIHTRK----MNLADDVDLEELAELTEGASGADLKAICTEAGMFA---------------IRD-------DRTEVTMEDF 365 (389)
T ss_pred HHHhcc----CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHH---------------HHc-------CCCCcCHHHH
Confidence 987754 44455677777788899999999999988764421 111 2335788888
Q ss_pred hhhHhHHH
Q 001150 853 QYGIGIFQ 860 (1138)
Q Consensus 853 ~~al~~lq 860 (1138)
..|+..++
T Consensus 366 ~~A~~~~~ 373 (389)
T PRK03992 366 LKAIEKVM 373 (389)
T ss_pred HHHHHHHh
Confidence 87776543
No 61
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=2.2e-18 Score=168.40 Aligned_cols=130 Identities=38% Similarity=0.648 Sum_probs=115.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccC-CeEEEEcCCcccccCCCCcchH
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEH 1017 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~ 1017 (1138)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..+..+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999887 9999999999998776 33445
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHH-hcCCceEEecC
Q 001150 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI-RRLPRRLMVNL 1070 (1138)
Q Consensus 1018 ~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLl-rRFd~~I~v~l 1070 (1138)
.....+++.|+..++..... ..+++||+|||.++.+++.++ +||+..+.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 56677888888888887654 467999999999999999999 99999998863
No 62
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.3e-18 Score=190.21 Aligned_cols=207 Identities=27% Similarity=0.453 Sum_probs=162.8
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
..|++++....+...+..+...-- +. + .-..|-++||||||||||||++|+.||...|..+-.+.+.++.. +-
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTa-NT----K-~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATA-NT----K-KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhc-cc----c-cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 347788888888888877665311 11 1 11345678999999999999999999999999998888777532 12
Q ss_pred cchHHHHHHHHHHHhccCCe-EEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcH
Q 001150 978 GEGEKYVKAVFSLASKIAPS-VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1056 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~Ps-IIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~ 1056 (1138)
...-..|.++|+.+.++..+ +|||||.|.++..|...-..++.+..+|.||.--.. ....++++.+||+|.+||.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhH
Confidence 23455789999999998665 788999999999988777788889999998744322 2367889999999999999
Q ss_pred HHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC---------------------------CcccHHHHHHHcCCCcHHH
Q 001150 1057 AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS---------------------------PDVDFDAIANMTDGYSGSD 1109 (1138)
Q Consensus 1057 aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~---------------------------~dvdl~~LA~~teGySgaD 1109 (1138)
++-.|||.+++|++|..++|.+++..|+.+.-+. .+.-+.+.|..|+||+|++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 9999999999999999999999999998763111 0112678899999999999
Q ss_pred HHHHHH
Q 001150 1110 LKNLCV 1115 (1138)
Q Consensus 1110 L~~L~~ 1115 (1138)
|..|+.
T Consensus 581 iakLva 586 (630)
T KOG0742|consen 581 IAKLVA 586 (630)
T ss_pred HHHHHH
Confidence 998853
No 63
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=1.8e-17 Score=185.89 Aligned_cols=216 Identities=16% Similarity=0.218 Sum_probs=161.7
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCC--CCCceEEEECCCCCCHHHHHHHHHHHhC-------CceEEEecccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 972 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~--rP~~gILL~GPPGTGKT~LArALA~elg-------~~fi~Id~seL 972 (1138)
+++|++++|+.+.+++.+ +..++...+.+.. .|..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 579999999999998876 3334444333322 2556899999999999999999998872 37999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC-
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP- 1051 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p- 1051 (1138)
.+.++|..+..+..+|..+.. +|||||||+.|...+.. ......+.+.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 989999888888888887744 89999999988543221 123345666777777653 2567788877542
Q ss_pred -C---CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHc------C-CCcHHHHHHHHHHHHH
Q 001150 1052 -F---DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMT------D-GYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1052 -~---~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~t------e-GySgaDL~~L~~~Aa~ 1119 (1138)
+ .+++++.+||...|.|+.++.+++.+|++.++.+....- +..+..++... + --++++++++++.|+.
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 458999999999999999999999999999998865432 22234444431 2 2358999999999999
Q ss_pred HHHHHHHHh
Q 001150 1120 RPIKEILEK 1128 (1138)
Q Consensus 1120 ~ai~eiie~ 1128 (1138)
+...++...
T Consensus 252 ~~~~r~~~~ 260 (284)
T TIGR02880 252 RQANRLFCD 260 (284)
T ss_pred HHHHHHhcC
Confidence 999888755
No 64
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3e-18 Score=188.37 Aligned_cols=216 Identities=28% Similarity=0.378 Sum_probs=164.5
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEE
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINI 967 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---------g~~fi~I 967 (1138)
.--|+.++--..+|+.|..++...+...+.-....+..-.+-||||||||||||+|++|+|+.+ ...++++
T Consensus 138 ~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 138 DGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred hhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 3457777777888999988887655444332222222222448999999999999999999998 3567899
Q ss_pred eccccccccccchHHHHHHHHHHHhcc-----CCeEEEEcCCcccccCCCC---cchHHHHHHHHHHHHHHhcCCCccCC
Q 001150 968 SMSSITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDT 1039 (1138)
Q Consensus 968 d~seL~s~~iG~~E~~I~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~---~~~~~al~~il~~LL~~Ldgl~~~~~ 1039 (1138)
++..++++|++++-+.+.++|...... .-..++|||+|.|...|.+ ..++...-++.|.+|.++|.+.. .
T Consensus 218 nshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~--~ 295 (423)
T KOG0744|consen 218 NSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR--Y 295 (423)
T ss_pred ehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc--C
Confidence 999999999999999999999877544 2346779999999866532 23334445788999999999864 4
Q ss_pred CCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC---CC------C---------CcccHHHHHHH
Q 001150 1040 ERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE---DL------S---------PDVDFDAIANM 1101 (1138)
Q Consensus 1040 ~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~---~l------~---------~dvdl~~LA~~ 1101 (1138)
.+|++++|+|-.+.||.+|..|-|.+.+++.|+...|.+|++..+.+. ++ . .+.....++..
T Consensus 296 ~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~ 375 (423)
T KOG0744|consen 296 PNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIEL 375 (423)
T ss_pred CCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHH
Confidence 789999999999999999999999999999999999999999988652 11 0 01112333433
Q ss_pred -cCCCcHHHHHHHH
Q 001150 1102 -TDGYSGSDLKNLC 1114 (1138)
Q Consensus 1102 -teGySgaDL~~L~ 1114 (1138)
+.|.+|+.|+.|=
T Consensus 376 ~~~gLSGRtlrkLP 389 (423)
T KOG0744|consen 376 STVGLSGRTLRKLP 389 (423)
T ss_pred hhcCCccchHhhhh
Confidence 4799999999873
No 65
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.74 E-value=1.7e-17 Score=177.85 Aligned_cols=148 Identities=15% Similarity=0.263 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc---------CCcchhhHHHHHHhcC--CCcEEEEeecccCCCccccC
Q 001150 639 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSDSYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKS 707 (1138)
Q Consensus 639 ~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~---------~~~~~~~~lk~~L~~l--~g~VvvIGstt~~d~~d~k~ 707 (1138)
.-+.|..||+-+.+ ..|||+||||+|.+.. .-.+..|.|...|+.+ +..|+-|||||+++-
T Consensus 195 gar~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~----- 266 (368)
T COG1223 195 GARRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL----- 266 (368)
T ss_pred HHHHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh-----
Confidence 34579999999999 9999999999998664 2233444444444333 348999999999972
Q ss_pred CCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcC
Q 001150 708 HPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKG 787 (1138)
Q Consensus 708 ~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~ 787 (1138)
+|.++..||+.+|++.||++|+|+.|+....++ +.+..
T Consensus 267 --------------------------------------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~----~Plpv 304 (368)
T COG1223 267 --------------------------------------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK----FPLPV 304 (368)
T ss_pred --------------------------------------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh----CCCcc
Confidence 467788999999999999999999999977644 55555
Q ss_pred CcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHh
Q 001150 788 NLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIG 857 (1138)
Q Consensus 788 Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~ 857 (1138)
++..-..+..+.|++|.||.+ +++..|+.+++. +..-.+..++++.++.
T Consensus 305 ~~~~~~~~~~t~g~SgRdike--------------kvlK~aLh~Ai~-------ed~e~v~~edie~al~ 353 (368)
T COG1223 305 DADLRYLAAKTKGMSGRDIKE--------------KVLKTALHRAIA-------EDREKVEREDIEKALK 353 (368)
T ss_pred ccCHHHHHHHhCCCCchhHHH--------------HHHHHHHHHHHH-------hchhhhhHHHHHHHHH
Confidence 556666677889999999954 456667766655 2344566777776655
No 66
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.74 E-value=5.8e-18 Score=199.19 Aligned_cols=233 Identities=17% Similarity=0.257 Sum_probs=174.2
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 001150 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1138)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1138)
.+||++...+ +..+..|.+++-.+|.++++.+... + ..+++|||+|||| +++++||||+|+++++.++-++.+.
T Consensus 179 ~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g-i-~~p~gVLL~GPPG--TGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 179 LESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG-I-KPPKGVILYGPPG--TGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC-C-CCCcEEEEECCCC--CCHHHHHHHHHHhhCCCEEEEecch
Confidence 4678887666 9999999999999999998753221 2 3567899999999 9999999999999998887665433
Q ss_pred ccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 001150 470 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 549 (1138)
Q Consensus 470 ~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 549 (1138)
|.+
T Consensus 253 L~~----------------------------------------------------------------------------- 255 (438)
T PTZ00361 253 LIQ----------------------------------------------------------------------------- 255 (438)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 221
Q ss_pred ccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccccc
Q 001150 550 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 629 (1138)
Q Consensus 550 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 629 (1138)
T Consensus 256 -------------------------------------------------------------------------------- 255 (438)
T PTZ00361 256 -------------------------------------------------------------------------------- 255 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cchhhHHHHHHhcC-----CCcEEEEee
Q 001150 630 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVIVIGS 696 (1138)
Q Consensus 630 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~~~~~lk~~L~~l-----~g~VvvIGs 696 (1138)
+|.++ ....+..+|+.+.. ..|+||||||||.++..+ .+....+...|..+ .++|.||++
T Consensus 256 --k~~Ge--~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~A 328 (438)
T PTZ00361 256 --KYLGD--GPKLVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMA 328 (438)
T ss_pred --hhcch--HHHHHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEe
Confidence 11112 23468889998887 899999999999987522 22233333444333 458999999
Q ss_pred cccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 697 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 697 tt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
||+.+..|++ |.|||| |+.+|+|++|+.++|.+||+.++
T Consensus 329 TNr~d~LDpa-------LlRpGR----------------------------------fd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 329 TNRIESLDPA-------LIRPGR----------------------------------IDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred cCChHHhhHH-------hccCCe----------------------------------eEEEEEeCCCCHHHHHHHHHHHH
Confidence 9999988887 777888 77899999999999999999887
Q ss_pred hhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhH
Q 001150 777 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGI 856 (1138)
Q Consensus 777 ~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al 856 (1138)
.+ +.+..+++....+..+.||+|+||+.+|.++.++. +. .....|+.++|..|+
T Consensus 368 ~k----~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~A---------------lr-------~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 368 SK----MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLA---------------LR-------ERRMKVTQADFRKAK 421 (438)
T ss_pred hc----CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHH---------------HH-------hcCCccCHHHHHHHH
Confidence 55 34556777777788899999999999988754421 11 123457888888777
Q ss_pred hHH
Q 001150 857 GIF 859 (1138)
Q Consensus 857 ~~l 859 (1138)
...
T Consensus 422 ~~v 424 (438)
T PTZ00361 422 EKV 424 (438)
T ss_pred HHH
Confidence 644
No 67
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.73 E-value=1.5e-17 Score=213.37 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=113.1
Q ss_pred CchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCcc--hhhHHHHHHhcC-----CCcEEEEeecccCCCcccc
Q 001150 634 GTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--SYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEK 706 (1138)
Q Consensus 634 ~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~--~~~~lk~~L~~l-----~g~VvvIGstt~~d~~d~k 706 (1138)
+++.....-|+.+|+.|.. ..|+||||||||.+-....+ ..+.|...|+.. ..+|+||||||++|..|||
T Consensus 1712 m~~~e~~~rIr~lFelARk---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPA 1788 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKA---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPA 1788 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHH---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHh
Confidence 4443344459999999999 99999999999996543221 245555555432 3579999999999999999
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhc
Q 001150 707 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 786 (1138)
Q Consensus 707 ~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~ 786 (1138)
|+|||| |++.|+|++|+..+|.+++..++.. +.+.+.
T Consensus 1789 -------LLRPGR----------------------------------FDR~I~Ir~Pd~p~R~kiL~ILl~t--kg~~L~ 1825 (2281)
T CHL00206 1789 -------LIAPNK----------------------------------LNTCIKIRRLLIPQQRKHFFTLSYT--RGFHLE 1825 (2281)
T ss_pred -------HcCCCC----------------------------------CCeEEEeCCCCchhHHHHHHHHHhh--cCCCCC
Confidence 999999 8899999999999999998865421 223333
Q ss_pred CC-cchhhHhhhcCCCCcccccchhccccccchhh----HH-HHHHHHHhhhhh
Q 001150 787 GN-LNHLRTVLGRSGLECEGLETLCIRDQSLTNES----AE-KIVGWALSHHLM 834 (1138)
Q Consensus 787 ~N-v~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~----ie-~iV~~A~~~~l~ 834 (1138)
.+ ++..+.+-.|.||+|+||..+|.+|++++... |+ ..+..|+.+.++
T Consensus 1826 ~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1826 KKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 22 44566678899999999999999988866332 11 335556655544
No 68
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.72 E-value=1.2e-17 Score=200.78 Aligned_cols=214 Identities=20% Similarity=0.303 Sum_probs=158.9
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 001150 383 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1138)
Q Consensus 383 vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1138)
+...+..+++|++++-+ ++.|..|.+.+.. |++++.. +++ ...++.|||+|||| +++++||||||++.+++
T Consensus 44 ~~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g---~~~~~giLL~GppG--tGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAGVP 115 (495)
T ss_pred cccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCCC
Confidence 34456789999999988 9999999987765 7877643 333 34567899999999 99999999999999998
Q ss_pred EEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 001150 462 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 541 (1138)
Q Consensus 462 ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1138)
++.++.+.|..
T Consensus 116 ~~~i~~~~~~~--------------------------------------------------------------------- 126 (495)
T TIGR01241 116 FFSISGSDFVE--------------------------------------------------------------------- 126 (495)
T ss_pred eeeccHHHHHH---------------------------------------------------------------------
Confidence 87766533211
Q ss_pred ccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccc
Q 001150 542 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 621 (1138)
Q Consensus 542 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 621 (1138)
.|+|
T Consensus 127 ----------------~~~g------------------------------------------------------------ 130 (495)
T TIGR01241 127 ----------------MFVG------------------------------------------------------------ 130 (495)
T ss_pred ----------------HHhc------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--------chhhHHHHH---HhcC--C
Q 001150 622 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSR---LEKL--P 688 (1138)
Q Consensus 622 f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--------~~~~~lk~~---L~~l--~ 688 (1138)
+ ....++.+|+.+.. ..|+||||||||.+...+. +....+... |+.+ .
T Consensus 131 --------------~--~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 131 --------------V--GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred --------------c--cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 0 11246788888877 8999999999999875221 111222222 2222 3
Q ss_pred CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 001150 689 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 768 (1138)
Q Consensus 689 g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~r 768 (1138)
++|+|||+||+++.+|++ |+|||| |+..|+|++|+.++|
T Consensus 192 ~~v~vI~aTn~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPA-------LLRPGR----------------------------------FDRQVVVDLPDIKGR 230 (495)
T ss_pred CCeEEEEecCChhhcCHH-------HhcCCc----------------------------------ceEEEEcCCCCHHHH
Confidence 579999999999988888 788888 888999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccc
Q 001150 769 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 813 (1138)
Q Consensus 769 l~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a 813 (1138)
.+||+.++.. .....+++....+..+.||+|+||..+|.++
T Consensus 231 ~~il~~~l~~----~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 231 EEILKVHAKN----KKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHHHHHHHhc----CCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999988754 2333455666777788999999999888754
No 69
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2e-18 Score=187.11 Aligned_cols=211 Identities=18% Similarity=0.309 Sum_probs=169.6
Q ss_pred ccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccc
Q 001150 391 ESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSL 470 (1138)
Q Consensus 391 vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~ 470 (1138)
.||.+.... |+..+.+-+++-.+|.|||+.. .-=...++++.|||+|| .+++.||||.|+.-.|.||-+=-|
T Consensus 182 Ety~diGGl--e~QiQEiKEsvELPLthPE~Ye--emGikpPKGVIlyG~PG--TGKTLLAKAVANqTSATFlRvvGs-- 253 (440)
T KOG0726|consen 182 ETYADIGGL--ESQIQEIKESVELPLTHPEYYE--EMGIKPPKGVILYGEPG--TGKTLLAKAVANQTSATFLRVVGS-- 253 (440)
T ss_pred hhhcccccH--HHHHHHHHHhhcCCCCCHHHHH--HcCCCCCCeeEEeCCCC--CchhHHHHHHhcccchhhhhhhhH--
Confidence 468888887 9999999999999999999952 22345788999999999 899999999999998887644321
Q ss_pred cCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 001150 471 LGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNHM 550 (1138)
Q Consensus 471 ~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 550 (1138)
+|.+
T Consensus 254 --------------------------------eLiQ-------------------------------------------- 257 (440)
T KOG0726|consen 254 --------------------------------ELIQ-------------------------------------------- 257 (440)
T ss_pred --------------------------------HHHH--------------------------------------------
Confidence 1221
Q ss_pred cccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccccc
Q 001150 551 LRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLRL 630 (1138)
Q Consensus 551 ~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~l 630 (1138)
||.| +
T Consensus 258 -------kylG----------d---------------------------------------------------------- 262 (440)
T KOG0726|consen 258 -------KYLG----------D---------------------------------------------------------- 262 (440)
T ss_pred -------HHhc----------c----------------------------------------------------------
Confidence 3343 1
Q ss_pred cCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcC-----CCcEEEEeec
Q 001150 631 ENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL-----PDKVIVIGSH 697 (1138)
Q Consensus 631 ~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~--------~~~~~~~~lk~~L~~l-----~g~VvvIGst 697 (1138)
.-++++.||.|+.+ ..|.|+||||||.+=. |..++-......|.++ +|.|-||=||
T Consensus 263 --------GpklvRqlF~vA~e---~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimAT 331 (440)
T KOG0726|consen 263 --------GPKLVRELFRVAEE---HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMAT 331 (440)
T ss_pred --------chHHHHHHHHHHHh---cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEec
Confidence 22479999999999 9999999999998443 4444444444555554 5799999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 698 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 698 t~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
|+.+.-||+ |-|||| .+++|++++||+..+.+|+.+|+.
T Consensus 332 nrie~LDPa-------LiRPGr----------------------------------IDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 332 NRIETLDPA-------LIRPGR----------------------------------IDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred ccccccCHh-------hcCCCc----------------------------------cccccccCCCchhhhceeEEEeec
Confidence 999999999 999999 557999999999999999999987
Q ss_pred hhhhhhhhcCCcchhhHhhhcCCCCcccccchhcccccc
Q 001150 778 RDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1138)
Q Consensus 778 ~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~l 816 (1138)
+ ..+..++++...+.....++|+|++++|.++-++
T Consensus 371 ~----Mtl~~dVnle~li~~kddlSGAdIkAictEaGll 405 (440)
T KOG0726|consen 371 R----MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLL 405 (440)
T ss_pred c----cchhccccHHHHhhcccccccccHHHHHHHHhHH
Confidence 7 4567778888878888999999999999987663
No 70
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2e-17 Score=201.09 Aligned_cols=215 Identities=21% Similarity=0.349 Sum_probs=169.1
Q ss_pred CCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 001150 385 DGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1138)
Q Consensus 385 ~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1138)
+-.++.|+|+|+=.- |..|..|.|-+- .||+|+. |..-=.-.++++||+|||| ++++.||||.|-+.|++|+.
T Consensus 302 ~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF~s 374 (774)
T KOG0731|consen 302 NEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPFFS 374 (774)
T ss_pred cCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCceee
Confidence 367888999998877 999999999886 7999875 3333356789999999999 99999999999999999998
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 001150 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1138)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1138)
+-.+.|- |.
T Consensus 375 vSGSEFv--------E~--------------------------------------------------------------- 383 (774)
T KOG0731|consen 375 VSGSEFV--------EM--------------------------------------------------------------- 383 (774)
T ss_pred echHHHH--------HH---------------------------------------------------------------
Confidence 7653331 10
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 001150 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1138)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1138)
|+|.
T Consensus 384 --------------~~g~-------------------------------------------------------------- 387 (774)
T KOG0731|consen 384 --------------FVGV-------------------------------------------------------------- 387 (774)
T ss_pred --------------hccc--------------------------------------------------------------
Confidence 1110
Q ss_pred cccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc---------CCcchhhHHHHHH---hcC--CCc
Q 001150 625 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSDSYSTFKSRL---EKL--PDK 690 (1138)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~---------~~~~~~~~lk~~L---~~l--~g~ 690 (1138)
| --.++.||..+.. ..|+||||||||.+-. ++.+.-+.|--.| +.. .+.
T Consensus 388 -~-------------asrvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 388 -G-------------ASRVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred -c-------------hHHHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 0 0148899999999 9999999999997543 2333333333333 222 358
Q ss_pred EEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHH
Q 001150 691 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 770 (1138)
Q Consensus 691 VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ 770 (1138)
|+||++||++|-.|+| |+|||| |+++|.|.+|+..+|.+
T Consensus 451 vi~~a~tnr~d~ld~a-------llrpGR----------------------------------fdr~i~i~~p~~~~r~~ 489 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPA-------LLRPGR----------------------------------FDRQIQIDLPDVKGRAS 489 (774)
T ss_pred EEEEeccCCccccCHH-------hcCCCc----------------------------------cccceeccCCchhhhHH
Confidence 9999999999989999 999999 88899999999999999
Q ss_pred HHHHhhhhhhhhhhh-cCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 771 SWKHQLDRDSETLKM-KGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 771 ILk~~L~~~~e~l~~-~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
|++.|+.+ +.+ .+.+++...+..|.|+.|+||..+|-++++
T Consensus 490 i~~~h~~~----~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~ 531 (774)
T KOG0731|consen 490 ILKVHLRK----KKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL 531 (774)
T ss_pred HHHHHhhc----cCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH
Confidence 99999865 333 466777778889999999999999997655
No 71
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.5e-17 Score=175.68 Aligned_cols=215 Identities=16% Similarity=0.265 Sum_probs=168.9
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 001150 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1138)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1138)
-+.-+||+.+.... +-.|+...+|+-.+|.|.++.+... -..++++||+|||| ++++|||||.||+--|.|+-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qig--idpprgvllygppg--~gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQIG--IDPPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHhC--CCCCcceEEeCCCC--CcHHHHHHHHhhccchheeee
Confidence 45567889998887 9999999999999999999976442 45678999999999 999999999999999998866
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 001150 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1138)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1138)
-.|.|.-
T Consensus 221 vgsefvq------------------------------------------------------------------------- 227 (408)
T KOG0727|consen 221 VGSEFVQ------------------------------------------------------------------------- 227 (408)
T ss_pred ccHHHHH-------------------------------------------------------------------------
Confidence 5422210
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 001150 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1138)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1138)
||.| .+
T Consensus 228 ------------kylg----------eg---------------------------------------------------- 233 (408)
T KOG0727|consen 228 ------------KYLG----------EG---------------------------------------------------- 233 (408)
T ss_pred ------------HHhc----------cC----------------------------------------------------
Confidence 3444 11
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC----cchh----hHHHHHHhcCCC-----cEE
Q 001150 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSY----STFKSRLEKLPD-----KVI 692 (1138)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~----~~~~----~~lk~~L~~l~g-----~Vv 692 (1138)
-+.++.+|.++.+ ..|.||||||||.+...+ ..+. ..|-..|...+| ||-
T Consensus 234 --------------prmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvk 296 (408)
T KOG0727|consen 234 --------------PRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVK 296 (408)
T ss_pred --------------cHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceE
Confidence 1368889999999 999999999999987622 2223 334444444444 999
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 001150 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1138)
Q Consensus 693 vIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~IL 772 (1138)
||=|||+.|..||+ |-|||| ++++|++++|+..++.-++
T Consensus 297 vimatnradtldpa-------llrpgr----------------------------------ldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 297 VIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred EEEecCcccccCHh-------hcCCcc----------------------------------ccccccCCCCchhhhhhhH
Confidence 99999999999999 999999 5579999999999999899
Q ss_pred HHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 773 k~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
.....+ ..+.+.++....+..--.++|+|+.++|-++-+
T Consensus 336 ~titsk----m~ls~~vdle~~v~rpdkis~adi~aicqeagm 374 (408)
T KOG0727|consen 336 STITSK----MNLSDEVDLEDLVARPDKISGADINAICQEAGM 374 (408)
T ss_pred Hhhhhc----ccCCcccCHHHHhcCccccchhhHHHHHHHHhH
Confidence 877655 445666777777777778999999999887644
No 72
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.8e-17 Score=171.33 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhcccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcCCC-----cEEEEeecccCCCcccc
Q 001150 640 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLPD-----KVIVIGSHTHTDNRKEK 706 (1138)
Q Consensus 640 k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~--------~~~~~~~~lk~~L~~l~g-----~VvvIGstt~~d~~d~k 706 (1138)
-+.++.||=.+.+ +.|.|||+||||.+=. |..+.-......|.+++| +|-||=|||+.|--|||
T Consensus 226 srmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 226 SRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred HHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 3479999999999 9999999999998543 223333333344455554 99999999999978899
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhc
Q 001150 707 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 786 (1138)
Q Consensus 707 ~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~ 786 (1138)
|-|||| .+++|+|++|++++|+.||++|-.+| .+-
T Consensus 303 -------llrpgr----------------------------------idrkiefp~p~e~ar~~ilkihsrkm----nl~ 337 (404)
T KOG0728|consen 303 -------LLRPGR----------------------------------IDRKIEFPPPNEEARLDILKIHSRKM----NLT 337 (404)
T ss_pred -------hcCCCc----------------------------------ccccccCCCCCHHHHHHHHHHhhhhh----chh
Confidence 889999 55799999999999999999987663 223
Q ss_pred CCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHH
Q 001150 787 GNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 859 (1138)
Q Consensus 787 ~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~l 859 (1138)
..++....+-.-+|-+|++++.+|+++-++ |+ ++..+-++.+||+.+...+
T Consensus 338 rgi~l~kiaekm~gasgaevk~vcteagm~-----------al-----------rerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 338 RGINLRKIAEKMPGASGAEVKGVCTEAGMY-----------AL-----------RERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred cccCHHHHHHhCCCCccchhhhhhhhhhHH-----------HH-----------HHhhccccHHHHHHHHHHH
Confidence 334444445566799999999999987662 11 3356678899999887744
No 73
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.69 E-value=2.7e-16 Score=187.67 Aligned_cols=219 Identities=20% Similarity=0.259 Sum_probs=156.2
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 001150 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1138)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1138)
-+.-+++|++...+ +..+..|.+++-..+.|+++. +|+ + ..+++|||+|||| +++++||||+|++++.++..
T Consensus 174 ~~~p~v~~~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~g--l-~~p~GILLyGPPG--TGKT~LAKAlA~eL~~~i~~ 246 (512)
T TIGR03689 174 EEVPDVTYADIGGL--DSQIEQIRDAVELPFLHPELYREYD--L-KPPKGVLLYGPPG--CGKTLIAKAVANSLAQRIGA 246 (512)
T ss_pred ecCCCCCHHHcCCh--HHHHHHHHHHHHHHhhCHHHHHhcc--C-CCCcceEEECCCC--CcHHHHHHHHHHhhcccccc
Confidence 45557999997777 999999999999999999875 454 3 3467899999999 89999999999998655431
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 001150 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1138)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1138)
. .+
T Consensus 247 --~---~~------------------------------------------------------------------------ 249 (512)
T TIGR03689 247 --E---TG------------------------------------------------------------------------ 249 (512)
T ss_pred --c---cC------------------------------------------------------------------------
Confidence 0 00
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 001150 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1138)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1138)
.+..|+ .-
T Consensus 250 ----------~~~~fl--------------------------------------------------------------~v 257 (512)
T TIGR03689 250 ----------DKSYFL--------------------------------------------------------------NI 257 (512)
T ss_pred ----------CceeEE--------------------------------------------------------------ec
Confidence 000000 00
Q ss_pred cccccccCCCchhhHHHHHHHHHHHHhhcc-cCCCeEEEEcchhhhhcC-----CcchhhHHHHHH----hcCC--CcEE
Q 001150 625 VTDLRLENSGTEDLDKLLINTLFEVVFSES-RSCPFILFMKDAEKSIAG-----NSDSYSTFKSRL----EKLP--DKVI 692 (1138)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~-~~~p~ILfiddi~~~l~~-----~~~~~~~lk~~L----~~l~--g~Vv 692 (1138)
.+...+++|+++ .+..++.+|+.+.+.+ ...|+||||||+|.++.. +.+....+.+.| +.+. ++|+
T Consensus 258 ~~~eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 258 KGPELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred cchhhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 122345567777 6677888999887643 347999999999998852 223322333333 3322 6899
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 001150 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1138)
Q Consensus 693 vIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~IL 772 (1138)
|||+||+++.+||+ |.|||| |+.+|+|++|+.++|.+||
T Consensus 336 VI~ATN~~d~LDpA-------LlRpGR----------------------------------fD~~I~~~~Pd~e~r~~Il 374 (512)
T TIGR03689 336 VIGASNREDMIDPA-------ILRPGR----------------------------------LDVKIRIERPDAEAAADIF 374 (512)
T ss_pred EEeccCChhhCCHh-------hcCccc----------------------------------cceEEEeCCCCHHHHHHHH
Confidence 99999999999999 888888 8899999999999999999
Q ss_pred HHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhcc
Q 001150 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 812 (1138)
Q Consensus 773 k~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~ 812 (1138)
+.++.... .. ...+....|+.++++..+|..
T Consensus 375 ~~~l~~~l---~l------~~~l~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 375 SKYLTDSL---PL------DADLAEFDGDREATAAALIQR 405 (512)
T ss_pred HHHhhccC---Cc------hHHHHHhcCCCHHHHHHHHHH
Confidence 98875411 11 122334568888888777665
No 74
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=2.8e-16 Score=168.45 Aligned_cols=190 Identities=22% Similarity=0.317 Sum_probs=123.5
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
.+|+|++|+++++..++-++.....+ ..+..++|||||||+|||+||..||++++.+|..++++.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 47999999999999988776532211 234468999999999999999999999999999988765421
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc--------c------CCCCEE
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT--------K------DTERIL 1043 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~--------~------~~~~VL 1043 (1138)
...+..++.... ...|||||||++| +... ...|+..|++... . +-.++.
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~-------qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQ-------QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHH-------HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHH-------HHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 122333333332 4679999999988 2222 2223333333221 0 114689
Q ss_pred EEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001150 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1138)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~A 1117 (1138)
+|++|.+...|...++.||..+..+..++.++..+|++......++. .+....+||..+.| +++-..+|++.+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 99999999999999999999888999999999999999887777665 33447889999988 666666666553
No 75
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.67 E-value=2.7e-15 Score=170.26 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=78.2
Q ss_pred cCCCchhhHHHHHHHHHHHHhhcc--cCCCeEEEEcchhhhhcCCcc----hhhHHH-HHH----hc-------------
Q 001150 631 ENSGTEDLDKLLINTLFEVVFSES--RSCPFILFMKDAEKSIAGNSD----SYSTFK-SRL----EK------------- 686 (1138)
Q Consensus 631 ~~~~~e~~~k~~i~~L~ev~~~~~--~~~p~ILfiddi~~~l~~~~~----~~~~lk-~~L----~~------------- 686 (1138)
++|+|| .+..|+.+|+.+...+ +.+|+||||||||.++++... .-+.+. .+| +.
T Consensus 186 sk~vGE--sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 186 SENAGE--PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCcCCc--HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 346677 8889999999998764 678999999999998863211 111121 223 21
Q ss_pred -CCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCH
Q 001150 687 -LPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQD 765 (1138)
Q Consensus 687 -l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~ 765 (1138)
...+|+||++||+++..|++ |+|||| |++. |.+|+.
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpA-------LlRpGR----------------------------------fDk~--i~lPd~ 300 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAP-------LIRDGR----------------------------------MEKF--YWAPTR 300 (413)
T ss_pred ccCCCceEEEeCCCcccCCHh-------HcCCCC----------------------------------CCce--eCCCCH
Confidence 24679999999999999999 999999 5554 458999
Q ss_pred HHHHHHHHHhhhh
Q 001150 766 EALLASWKHQLDR 778 (1138)
Q Consensus 766 E~rl~ILk~~L~~ 778 (1138)
++|..||+.++.+
T Consensus 301 e~R~eIL~~~~r~ 313 (413)
T PLN00020 301 EDRIGVVHGIFRD 313 (413)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988765
No 76
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-15 Score=175.85 Aligned_cols=219 Identities=17% Similarity=0.313 Sum_probs=167.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
.+|+.++--.+.|+.+.+-+.......+.|.+.+.... +|.|||||||||||+++.|+|+.+++.++-+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 78999999999999999888887888888877654433 789999999999999999999999999999998775432
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch-----H-HHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-----H-EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-----~-~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
.. ++.+...+. ..+||+|.+||.-+.-+..... + ...+-.+..||..+||+....+.--|||+|||.+
T Consensus 275 ---~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 12 666655443 3589999999987643322111 1 1223467789999999998877778999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCC--CcHHHHHHHHHH---HHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDG--YSGSDLKNLCVT---AAHRPIKE 1124 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teG--ySgaDL~~L~~~---Aa~~ai~e 1124 (1138)
+.||||++| |.|.+|+++.-+.+....++..++.-.. +..-+.++.+..++ .|++|+....-. .+-.++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999986532 12224445544443 589999876432 45666666
Q ss_pred HHH
Q 001150 1125 ILE 1127 (1138)
Q Consensus 1125 iie 1127 (1138)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 665
No 77
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.7e-16 Score=182.32 Aligned_cols=191 Identities=26% Similarity=0.330 Sum_probs=153.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1012 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~ 1012 (1138)
.+|||+||+|+|||.||+++++++ -+.+..++|+.+.........+.+..+|..+.+++|+||+||++|.|++...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 579999999999999999999998 4677789999998877777788899999999999999999999999997433
Q ss_pred Ccc-hHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCC
Q 001150 1013 NPG-EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL 1089 (1138)
Q Consensus 1013 ~~~-~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l 1089 (1138)
... ........+..++..+-....+.+..+.||||.+....|++.+.+ +|+.++.++.|+..+|.+|++.++++...
T Consensus 512 ~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~ 591 (952)
T KOG0735|consen 512 NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS 591 (952)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh
Confidence 322 222223333444433333333456778999999999999998887 89999999999999999999999988652
Q ss_pred C-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1090 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1090 ~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
. ...|++.++..|+||...||..++++|.+.++.+.+.
T Consensus 592 ~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris 630 (952)
T KOG0735|consen 592 DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS 630 (952)
T ss_pred hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc
Confidence 2 2344566999999999999999999999999965543
No 78
>CHL00176 ftsH cell division protein; Validated
Probab=99.65 E-value=4.3e-16 Score=191.13 Aligned_cols=216 Identities=20% Similarity=0.295 Sum_probs=158.8
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeE
Q 001150 383 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 462 (1138)
Q Consensus 383 vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~l 462 (1138)
+....+..++|+++..+ +..|..|.+.+.. |++++.. ..-=...++.|||+|||| +++++||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~~-lk~~~~~--~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVSF-LKKPERF--TAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHHH-HhCHHHH--hhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 34556778999999988 9999999888764 8877653 221235578899999999 999999999999999998
Q ss_pred EEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 001150 463 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 542 (1138)
Q Consensus 463 l~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (1138)
+.++.+.|.. .
T Consensus 245 i~is~s~f~~--------~------------------------------------------------------------- 255 (638)
T CHL00176 245 FSISGSEFVE--------M------------------------------------------------------------- 255 (638)
T ss_pred eeccHHHHHH--------H-------------------------------------------------------------
Confidence 8776533321 0
Q ss_pred cccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccc
Q 001150 543 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 622 (1138)
Q Consensus 543 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff 622 (1138)
|+|
T Consensus 256 ----------------~~g------------------------------------------------------------- 258 (638)
T CHL00176 256 ----------------FVG------------------------------------------------------------- 258 (638)
T ss_pred ----------------hhh-------------------------------------------------------------
Confidence 000
Q ss_pred cccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcC-----CC
Q 001150 623 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL-----PD 689 (1138)
Q Consensus 623 ~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~--------~~~~~~~~lk~~L~~l-----~g 689 (1138)
. ....++.+|+.+.. ..|+||||||||.+.. ++.+.-..+...|..+ +.
T Consensus 259 -------------~--~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 259 -------------V--GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred -------------h--hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 0 11136777887776 8999999999999763 1222223333333222 34
Q ss_pred cEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHH
Q 001150 690 KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALL 769 (1138)
Q Consensus 690 ~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl 769 (1138)
+|+|||+||+++..|++ |+|||| |+.++.|.+|+.++|.
T Consensus 321 ~ViVIaaTN~~~~LD~A-------LlRpGR----------------------------------Fd~~I~v~lPd~~~R~ 359 (638)
T CHL00176 321 GVIVIAATNRVDILDAA-------LLRPGR----------------------------------FDRQITVSLPDREGRL 359 (638)
T ss_pred CeeEEEecCchHhhhhh-------hhcccc----------------------------------CceEEEECCCCHHHHH
Confidence 89999999999888888 788888 8889999999999999
Q ss_pred HHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhcccc
Q 001150 770 ASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQ 814 (1138)
Q Consensus 770 ~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~ 814 (1138)
+||+.++.. .....+++....+-.+.|++|+||..+|.+++
T Consensus 360 ~IL~~~l~~----~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 360 DILKVHARN----KKLSPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred HHHHHHHhh----cccchhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 999988865 23334555666677889999999988877543
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.65 E-value=5.3e-16 Score=179.75 Aligned_cols=214 Identities=21% Similarity=0.280 Sum_probs=157.2
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
+.-+++|++++.. +..+..|.+++..+++++++.+... ...+++|||+|||| +++++||||+|++.++.++.+.
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g--~~~p~gvLL~GppG--tGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVG--IEPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcC--CCCCceEEEECCCC--CCHHHHHHHHHHhCCCCEEecc
Confidence 3457789998777 9999999999999999998753221 23467899999999 9999999999999998876554
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 001150 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1138)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1138)
.+.+..
T Consensus 189 ~~~l~~-------------------------------------------------------------------------- 194 (364)
T TIGR01242 189 GSELVR-------------------------------------------------------------------------- 194 (364)
T ss_pred hHHHHH--------------------------------------------------------------------------
Confidence 211110
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1138)
T Consensus 195 -------------------------------------------------------------------------------- 194 (364)
T TIGR01242 195 -------------------------------------------------------------------------------- 194 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--------chhhHHHHHH---hcC--CCcEEE
Q 001150 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRL---EKL--PDKVIV 693 (1138)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--------~~~~~lk~~L---~~l--~g~Vvv 693 (1138)
+|.++ ....+..+|+.+.. ..|.||||||+|.+...+. +.-..+-..| +.+ .++|+|
T Consensus 195 -----~~~g~--~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 195 -----KYIGE--GARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred -----HhhhH--HHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 01111 22356778888777 8999999999999865221 1112222222 222 468999
Q ss_pred EeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 001150 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1138)
Q Consensus 694 IGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk 773 (1138)
|+++|+.+..|++ |+|||| |+..++|++|+.++|.+||+
T Consensus 265 I~ttn~~~~ld~a-------l~r~gr----------------------------------fd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 265 IAATNRPDILDPA-------LLRPGR----------------------------------FDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred EEecCChhhCChh-------hcCccc----------------------------------CceEEEeCCcCHHHHHHHHH
Confidence 9999999877777 677787 77899999999999999999
Q ss_pred HhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 774 ~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
.++.+ .....+++....+..+.||+|+||..+|.++.+
T Consensus 304 ~~~~~----~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~ 341 (364)
T TIGR01242 304 IHTRK----MKLAEDVDLEAIAKMTEGASGADLKAICTEAGM 341 (364)
T ss_pred HHHhc----CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 87644 334455666677778899999999998886544
No 80
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=2.8e-15 Score=170.11 Aligned_cols=182 Identities=26% Similarity=0.443 Sum_probs=133.1
Q ss_pred cccccccchHHHH---HHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 898 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk---~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+++|++|++++. ..|.+.+.. ....+++||||||||||+||+.||...+.+|..++...
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 4788999998886 445555541 22368999999999999999999999999999998644
Q ss_pred ccccchHHHHHHHHHHHhccC----CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec--
Q 001150 975 KWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1048 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT-- 1048 (1138)
..-+-++.+|+.|++.. ..|||||||+++ +...+ ..||-.+ ++..+++||+|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQ-------D~lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQ-------DALLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhh-------hhhhhhh------cCCeEEEEeccCC
Confidence 33467889999996553 489999999988 21111 1233333 34667888766
Q ss_pred CCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh--CCCC------CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--EDLS------PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k--~~l~------~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
|..+.|.+++++|+ .++.+...+.++..++++..+.. .++. ++.-.+.|+..++|-..+-| |+++.++..
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~~~ 219 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAALS 219 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHHHh
Confidence 55689999999999 88999999999999999984433 2333 23347888899998666544 555555543
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.63 E-value=9.4e-15 Score=184.30 Aligned_cols=208 Identities=18% Similarity=0.294 Sum_probs=146.2
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc--------
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 973 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~-------- 973 (1138)
++.|++++++.+.+++...... ... ....+||+||||||||++|++||+.++.+|+++++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~--~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKM--KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 4779999999999877643211 111 123799999999999999999999999999999865431
Q ss_pred -cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcC-----CC------ccCCCC
Q 001150 974 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-----LR------TKDTER 1041 (1138)
Q Consensus 974 -s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldg-----l~------~~~~~~ 1041 (1138)
..|+|...+.+.+.|..+....| ||||||||.+...... .. .+.|+..++. +. ..+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~-------~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DP-------ASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CH-------HHHHHHhcCHHhcCccccccCCceeccCC
Confidence 35677777888888888876665 8999999999643211 11 2233333331 00 112257
Q ss_pred EEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHh-----hCCCC------CcccHHHHHH-HcCCCcHHH
Q 001150 1042 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA-----KEDLS------PDVDFDAIAN-MTDGYSGSD 1109 (1138)
Q Consensus 1042 VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~-----k~~l~------~dvdl~~LA~-~teGySgaD 1109 (1138)
+++|+|||..+.+++++++|| .+|.|+.|+.+++.+|++.++. ..++. .+..+..|++ .+..+..++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 899999999999999999999 5889999999999999988762 22332 1223444444 333445577
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001150 1110 LKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1110 L~~L~~~Aa~~ai~eiie 1127 (1138)
|+..+...+..+..+++.
T Consensus 543 l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 543 LERQIEKICRKAAVKLVE 560 (775)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777777666666664
No 82
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.2e-15 Score=161.48 Aligned_cols=235 Identities=20% Similarity=0.315 Sum_probs=177.6
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 001150 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1138)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1138)
..++.+.... |.....|++|...+++|++-++.. =-..++++|++|||| .++++||+|-|-+-.|.||-|
T Consensus 167 tE~YsDiGGl--dkQIqELvEAiVLpmth~ekF~~l--gi~pPKGvLmYGPPG--TGKTlmARAcAaqT~aTFLKL---- 236 (424)
T KOG0652|consen 167 TEQYSDIGGL--DKQIQELVEAIVLPMTHKEKFENL--GIRPPKGVLMYGPPG--TGKTLMARACAAQTNATFLKL---- 236 (424)
T ss_pred cccccccccH--HHHHHHHHHHhccccccHHHHHhc--CCCCCCceEeeCCCC--CcHHHHHHHHHHhccchHHHh----
Confidence 3456776666 899999999999999999865321 134678999999999 899999999999998887643
Q ss_pred ccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 001150 470 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 549 (1138)
Q Consensus 470 ~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 549 (1138)
+| ..|-+
T Consensus 237 -Ag-----------------------------PQLVQ------------------------------------------- 243 (424)
T KOG0652|consen 237 -AG-----------------------------PQLVQ------------------------------------------- 243 (424)
T ss_pred -cc-----------------------------hHHHh-------------------------------------------
Confidence 33 00110
Q ss_pred ccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccccc
Q 001150 550 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 629 (1138)
Q Consensus 550 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 629 (1138)
-|+|
T Consensus 244 --------MfIG-------------------------------------------------------------------- 247 (424)
T KOG0652|consen 244 --------MFIG-------------------------------------------------------------------- 247 (424)
T ss_pred --------hhhc--------------------------------------------------------------------
Confidence 1222
Q ss_pred ccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcCC-----CcEEEEee
Q 001150 630 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLP-----DKVIVIGS 696 (1138)
Q Consensus 630 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~--------~~~~~~~~lk~~L~~l~-----g~VvvIGs 696 (1138)
+ .-.+++--|.++++ ..|.||||||+|.+=. |-.+.-......|.++. .+|-||.|
T Consensus 248 ------d--GAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 248 ------D--GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred ------c--hHHHHHHHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 0 23468888999998 9999999999998543 44444444444455554 49999999
Q ss_pred cccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 697 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 697 tt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
||+.|--||+ |-|-|| ++++|++++|++++|.+|+++|-
T Consensus 317 TNRvDiLDPA-------LlRSGR----------------------------------LDRKIEfP~Pne~aRarIlQIHs 355 (424)
T KOG0652|consen 317 TNRVDILDPA-------LLRSGR----------------------------------LDRKIEFPHPNEEARARILQIHS 355 (424)
T ss_pred cccccccCHH-------Hhhccc----------------------------------ccccccCCCCChHHHHHHHHHhh
Confidence 9999977888 777777 66799999999999999999987
Q ss_pred hhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhH
Q 001150 777 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGI 856 (1138)
Q Consensus 777 ~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al 856 (1138)
.+ ....+++++.+.+-.+-++.|+.++.+|.++-++ |+ +...-.++.++|..++
T Consensus 356 RK----Mnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi-----------AL-----------Rr~atev~heDfmegI 409 (424)
T KOG0652|consen 356 RK----MNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI-----------AL-----------RRGATEVTHEDFMEGI 409 (424)
T ss_pred hh----cCCCCCCCHHHHhhcccccCchhheeeehhhhHH-----------HH-----------hcccccccHHHHHHHH
Confidence 65 4567788888889999999999999999987652 11 2234557788888877
Q ss_pred hHHHH
Q 001150 857 GIFQA 861 (1138)
Q Consensus 857 ~~lq~ 861 (1138)
..+|.
T Consensus 410 ~eVqa 414 (424)
T KOG0652|consen 410 LEVQA 414 (424)
T ss_pred HHHHH
Confidence 65543
No 83
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-15 Score=163.40 Aligned_cols=216 Identities=15% Similarity=0.240 Sum_probs=166.9
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
.-+||+.+...- .....-|.+.+-.+|-|||-+ +.+ -..+++|||+|||| .+++.+|+|.|+.-+|.|+-+=
T Consensus 171 kpdvty~dvggc--keqieklrevve~pll~perfv~lg---idppkgvllygppg--tgktl~aravanrtdacfirvi 243 (435)
T KOG0729|consen 171 KPDVTYSDVGGC--KEQIEKLREVVELPLLHPERFVNLG---IDPPKGVLLYGPPG--TGKTLCARAVANRTDACFIRVI 243 (435)
T ss_pred CCCcccccccch--HHHHHHHHHHHhccccCHHHHhhcC---CCCCCceEEeCCCC--CchhHHHHHHhcccCceEEeeh
Confidence 346777775555 677788999999999999853 332 34678999999999 8999999999999999987542
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 001150 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1138)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1138)
| +| |-+
T Consensus 244 -----g------se-----------------------lvq---------------------------------------- 249 (435)
T KOG0729|consen 244 -----G------SE-----------------------LVQ---------------------------------------- 249 (435)
T ss_pred -----h------HH-----------------------HHH----------------------------------------
Confidence 2 01 111
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1138)
||||
T Consensus 250 -----------kyvg----------------------------------------------------------------- 253 (435)
T KOG0729|consen 250 -----------KYVG----------------------------------------------------------------- 253 (435)
T ss_pred -----------HHhh-----------------------------------------------------------------
Confidence 4555
Q ss_pred cccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc----CCcchhhHHHHHH----hcC-----CCcEEE
Q 001150 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL----EKL-----PDKVIV 693 (1138)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~----~~~~~~~~lk~~L----~~l-----~g~Vvv 693 (1138)
| .-+.++.||+.+.. ...+||||||||.+=+ ....-.|.++.++ .+| +|||-|
T Consensus 254 ---------e--garmvrelf~mart---kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 254 ---------E--GARMVRELFEMART---KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred ---------h--hHHHHHHHHHHhcc---cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 2 34579999999999 9999999999998544 1122334454433 233 689999
Q ss_pred EeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 001150 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1138)
Q Consensus 694 IGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk 773 (1138)
+=|||++|.-||+ |-|||| +++++++.||+-|+|..|++
T Consensus 320 lmatnrpdtldpa-------llrpgr----------------------------------ldrkvef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 320 LMATNRPDTLDPA-------LLRPGR----------------------------------LDRKVEFGLPDLEGRTHIFK 358 (435)
T ss_pred EeecCCCCCcCHh-------hcCCcc----------------------------------cccceeccCCcccccceeEE
Confidence 9999999999999 899999 55799999999999999999
Q ss_pred HhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchh
Q 001150 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNE 819 (1138)
Q Consensus 774 ~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~ 819 (1138)
+|... .....++...-.+-.|.+-.|++|+++|+++-++...
T Consensus 359 ihaks----msverdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 359 IHAKS----MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred Eeccc----cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 88744 4556667776677788999999999999998775433
No 84
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=3.1e-15 Score=184.82 Aligned_cols=126 Identities=15% Similarity=0.295 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cc---hhhHHHHHHhcC--CCcEEEEeecccCCCccccCC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SD---SYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKSH 708 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~---~~~~lk~~L~~l--~g~VvvIGstt~~d~~d~k~~ 708 (1138)
.++.+|+.+.. ..|+||||||||.+...+ .+ ..+.|-..|+.. ...|+|||+||+++..|++
T Consensus 232 ~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A-- 306 (644)
T PRK10733 232 RVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA-- 306 (644)
T ss_pred HHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH--
Confidence 36667777766 789999999999976421 11 222222223333 3479999999999988999
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCC
Q 001150 709 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 788 (1138)
Q Consensus 709 ~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~N 788 (1138)
|+|||| |+++|.|++|+.++|.+||+.++.+ +.+..+
T Consensus 307 -----l~RpgR----------------------------------fdr~i~v~~Pd~~~R~~Il~~~~~~----~~l~~~ 343 (644)
T PRK10733 307 -----LLRPGR----------------------------------FDRQVVVGLPDVRGREQILKVHMRR----VPLAPD 343 (644)
T ss_pred -----HhCCcc----------------------------------cceEEEcCCCCHHHHHHHHHHHhhc----CCCCCc
Confidence 889999 8889999999999999999988755 344556
Q ss_pred cchhhHhhhcCCCCcccccchhccccc
Q 001150 789 LNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 789 v~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
++....+-.+.||+|+||..+|.+++.
T Consensus 344 ~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 344 IDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 666666778899999999998886544
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=1.5e-14 Score=181.61 Aligned_cols=184 Identities=24% Similarity=0.396 Sum_probs=140.1
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id 968 (1138)
.+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 567889999888877766542 122579999999999999999999987 77889999
Q ss_pred ccccc--cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch-HHHHHHHHHHHHHHhcCCCccCCCCEEEE
Q 001150 969 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1138)
Q Consensus 969 ~seL~--s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~~al~~il~~LL~~Ldgl~~~~~~~VLVI 1045 (1138)
+..+. .++.|+.+..++.+|+.+.+..+.||||||||.|++.....++ .... +.|...+. +..+.+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~----~~L~~~l~------~g~i~~I 315 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS----NLLKPALS------SGKLRCI 315 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH----HHHHHHHh------CCCeEEE
Confidence 88886 4788999999999999998888999999999999865432222 1222 22222221 3578899
Q ss_pred EecCCC-----CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcCCCcH
Q 001150 1046 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1046 aTTN~p-----~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~----~l~-~dvdl~~LA~~teGySg 1107 (1138)
++|+.. ..+|+++.|||. .|.|+.|+.+++.+|++.+.... ++. .+..+..++.++..|-+
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 999863 467999999995 79999999999999999877542 222 44557778887776643
No 86
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=3.9e-14 Score=159.67 Aligned_cols=199 Identities=21% Similarity=0.235 Sum_probs=136.7
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccccc
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 978 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG 978 (1138)
+|++++|++++++.|..++...... ..++.++||+||||+|||+||+++|++++.++..+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 6899999999999998887532111 223467999999999999999999999998877665543221
Q ss_pred chHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH--hcCCCc-----cCCCCEEEEEecCCC
Q 001150 979 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRT-----KDTERILVLAATNRP 1051 (1138)
Q Consensus 979 ~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~--Ldgl~~-----~~~~~VLVIaTTN~p 1051 (1138)
...+...+... ..+.|||||||+.+.. ...+.+..+++..-.. ++.... ....++.+|++|+.+
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLSP-----AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhCH-----HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11222232222 2468999999998831 1222332222222111 111000 012358899999999
Q ss_pred CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1052 ~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
..+++++++||..++.+..++.+++.++++..+...++. ++..+..|++.+.|+. +.+.+++..+...
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 999999999998889999999999999999988876554 3444788999998866 5667777765443
No 87
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.59 E-value=3.7e-14 Score=162.18 Aligned_cols=201 Identities=21% Similarity=0.234 Sum_probs=141.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
.+|++++|.++.++.|..++..... . ..+..++||+||||+|||++|+++|++++..+..++.+.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4799999999999999888753111 1 23457899999999999999999999999988777655432
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH--HhcCCCcc-----CCCCEEEEEecCC
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTK-----DTERILVLAATNR 1050 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~--~Ldgl~~~-----~~~~VLVIaTTN~ 1050 (1138)
....+..++... ..+.||||||||.+. ....+.+..+++.... .++..... .-.++.+|++|+.
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 122344444433 346899999999883 1122222222222110 01110000 1134788999999
Q ss_pred CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
+..+++.+++||..++.++.|+.+++.+|++..+...++. ++..+..|+..+.|+. +.+..++..+...+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 9999999999999899999999999999999998887665 3344788999998855 66777777655544
No 88
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=6.7e-15 Score=176.64 Aligned_cols=218 Identities=20% Similarity=0.312 Sum_probs=165.0
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhccCCcc-cccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 001150 383 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKD-HAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1138)
Q Consensus 383 vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~-~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1138)
......+.|+|.+.=.- |..|..|.+.+- .||.|. |.+.+. -.++++||.|||| ..+++||||.|-+-+++
T Consensus 139 ~~~~~~~~v~F~DVAG~--dEakeel~EiVd-fLk~p~ky~~lGa---kiPkGvlLvGpPG--TGKTLLAkAvAgEA~VP 210 (596)
T COG0465 139 LYLEDQVKVTFADVAGV--DEAKEELSELVD-FLKNPKKYQALGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVP 210 (596)
T ss_pred HhcccccCcChhhhcCc--HHHHHHHHHHHH-HHhCchhhHhccc---ccccceeEecCCC--CCcHHHHHHHhcccCCC
Confidence 34444789999994333 899999999876 677654 445554 5678999999999 89999999999999999
Q ss_pred EEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 001150 462 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 541 (1138)
Q Consensus 462 ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1138)
+.-+-.|+|--
T Consensus 211 Ff~iSGS~FVe--------------------------------------------------------------------- 221 (596)
T COG0465 211 FFSISGSDFVE--------------------------------------------------------------------- 221 (596)
T ss_pred ceeccchhhhh---------------------------------------------------------------------
Confidence 76554433311
Q ss_pred ccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccc
Q 001150 542 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 621 (1138)
Q Consensus 542 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 621 (1138)
-|||
T Consensus 222 ----------------mfVG------------------------------------------------------------ 225 (596)
T COG0465 222 ----------------MFVG------------------------------------------------------------ 225 (596)
T ss_pred ----------------hhcC------------------------------------------------------------
Confidence 1222
Q ss_pred ccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc--------CCcchhhHHH---HHHhcCC--
Q 001150 622 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFK---SRLEKLP-- 688 (1138)
Q Consensus 622 f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~--------~~~~~~~~lk---~~L~~l~-- 688 (1138)
+||- -++-||+.+.+ ..|+||||||||..=. |+.+....+- -.++-..
T Consensus 226 ---vGAs-------------RVRdLF~qAkk---~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 226 ---VGAS-------------RVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ---CCcH-------------HHHHHHHHhhc---cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 1111 38889999999 9999999999997332 2333333333 3333333
Q ss_pred CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 001150 689 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 768 (1138)
Q Consensus 689 g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~r 768 (1138)
..|+||++|||+|--|+| |.|||| |+++|.|.+||..+|
T Consensus 287 ~gviviaaTNRpdVlD~A-------LlRpgR----------------------------------FDRqI~V~~PDi~gR 325 (596)
T COG0465 287 EGVIVIAATNRPDVLDPA-------LLRPGR----------------------------------FDRQILVELPDIKGR 325 (596)
T ss_pred CceEEEecCCCcccchHh-------hcCCCC----------------------------------cceeeecCCcchhhH
Confidence 489999999999988999 999999 888999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccc
Q 001150 769 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 817 (1138)
Q Consensus 769 l~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls 817 (1138)
.+|++.|++. ..+..+++....+-.+.|++|+||..++.++++++
T Consensus 326 e~IlkvH~~~----~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~a 370 (596)
T COG0465 326 EQILKVHAKN----KPLAEDVDLKKIARGTPGFSGADLANLLNEAALLA 370 (596)
T ss_pred HHHHHHHhhc----CCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHH
Confidence 9999988844 56667777777888999999999988888766643
No 89
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.3e-14 Score=165.05 Aligned_cols=185 Identities=18% Similarity=0.231 Sum_probs=137.1
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|+|++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 35799999999999999988763 1223469999999999999999999999753
Q ss_pred -----------eEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 964 -----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
|+.++...- ..-..++.+.+.+. .....|+||||+|.|- ...++.|+
T Consensus 81 C~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 333333210 11223444443333 3356799999999882 23456666
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..++. ...++++|++|+.++.|.+.+++|| .++.|..++.++..++++.++..+++. .+..+..|++.++| +.
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 66654 2467888999999999999999999 789999999999999999999888765 45557889999888 55
Q ss_pred HHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAA 1118 (1138)
Q Consensus 1108 aDL~~L~~~Aa 1118 (1138)
++..++++.++
T Consensus 217 RdAL~lLeq~i 227 (484)
T PRK14956 217 RDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHH
Confidence 66777776654
No 90
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7.3e-14 Score=170.38 Aligned_cols=185 Identities=19% Similarity=0.240 Sum_probs=136.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|+|++|++.+++.|+..+.. .+..+.+||+||+|+|||++|+++|+.+++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 5799999999999999998752 2233568999999999999999999999652
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
+++++..+ ...-..++.+++.+.. ....||||||+|.|- ....|.|+.
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLK 141 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLK 141 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHH
Confidence 33333321 1112234555554432 245799999999882 123455555
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.|+.. ..++.||.+||.+..|.+.|++|| ..|.|..++.++..++|+.++.++++. ++..+..|++.++|- .+
T Consensus 142 tLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mR 215 (830)
T PRK07003 142 TLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MR 215 (830)
T ss_pred HHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 55543 357889999999999999999999 889999999999999999999888775 445578888899884 45
Q ss_pred HHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAH 1119 (1138)
Q Consensus 1109 DL~~L~~~Aa~ 1119 (1138)
+..+++..+..
T Consensus 216 dALsLLdQAia 226 (830)
T PRK07003 216 DALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHH
Confidence 66677665553
No 91
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.56 E-value=7.4e-14 Score=152.56 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=142.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
..|+|++|++++++.|+-++.....+ ....-++||+||||.|||+||..+|+++|.++...+++.+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 47999999999999999888753332 234468999999999999999999999999998888777632
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHh-cCCCcc------CCCCEEEEEecCC
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGLRTK------DTERILVLAATNR 1050 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~L-dgl~~~------~~~~VLVIaTTN~ 1050 (1138)
..-+..++... ....|||||||+++ ++...+.+--.+..|-..+ -|-.+. +-.++-+|++|.+
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 23333443332 34589999999988 3333344333333332111 111111 1257899999999
Q ss_pred CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001150 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1138)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~ 1116 (1138)
...|...++.||..+.++...+.++..+|+.......++. .+....++|+.+.| +++-...|+.+
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrR 226 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRR 226 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHH
Confidence 9999999999999999999999999999999988877766 34457889999988 55444444443
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.3e-14 Score=169.15 Aligned_cols=184 Identities=20% Similarity=0.269 Sum_probs=136.6
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~--------------- 962 (1138)
.+|+|++|++.+++.|++.+.. .+..+.+||+||+|+|||++|+.+|+.+++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 5799999999999999998863 223356899999999999999999999976
Q ss_pred --------------ceEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHH
Q 001150 963 --------------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024 (1138)
Q Consensus 963 --------------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il 1024 (1138)
.+++++... ...-..++++.+.+. .....|+||||+|.|- ....
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~Aa 141 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAF 141 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHH
Confidence 233333321 011233444444433 3346799999999882 2345
Q ss_pred HHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcC
Q 001150 1025 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTD 1103 (1138)
Q Consensus 1025 ~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~te 1103 (1138)
|.||..|+.- ..+++||++|+.++.|.+.+++|| .++.|..++.++..+.++.++.++++..+ ..+..|+..++
T Consensus 142 NALLKTLEEP----P~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhccC----CCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6677666552 367888999999999999999999 88999999999999999999988776643 33677888888
Q ss_pred CCcHHHHHHHHHHHH
Q 001150 1104 GYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1104 GySgaDL~~L~~~Aa 1118 (1138)
| +.++..+++..+.
T Consensus 217 G-s~RdALsLLdQai 230 (700)
T PRK12323 217 G-SMRDALSLTDQAI 230 (700)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5567777766544
No 93
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=1.3e-13 Score=161.78 Aligned_cols=226 Identities=21% Similarity=0.297 Sum_probs=151.5
Q ss_pred ccchHHHHHHHHHHHhcccCchhhhhc--CCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-ccccc
Q 001150 903 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE 979 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f~~--~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG~ 979 (1138)
++|++.+++.|...+..+..+...... .....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 689999999998777543322211000 012234468999999999999999999999999999999988753 57776
Q ss_pred hH-HHHHHHHHH----HhccCCeEEEEcCCcccccCCCCcchH--HHHHHHHHHHHHHhcCCC---------ccCCCCEE
Q 001150 980 GE-KYVKAVFSL----ASKIAPSVIFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLR---------TKDTERIL 1043 (1138)
Q Consensus 980 ~E-~~I~~lF~~----A~k~~PsIIfIDEID~L~~~r~~~~~~--~al~~il~~LL~~Ldgl~---------~~~~~~VL 1043 (1138)
.. ..+..++.. ..+..++||||||||.+...+.++... -....+.+.||..|++.. ..+..+++
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 43 344555443 234578999999999997553222111 011246677777776531 11123455
Q ss_pred EEEecCCCC----------------------------------------------------CCcHHHHhcCCceEEecCC
Q 001150 1044 VLAATNRPF----------------------------------------------------DLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1044 VIaTTN~p~----------------------------------------------------~Ld~aLlrRFd~~I~v~lP 1071 (1138)
+|+|+|-.+ -+.|+|+.|++.++.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 565555400 1468889999999999999
Q ss_pred CHHHHHHHHHH----HH-------hhCCCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1072 DAPNRAKILQV----IL-------AKEDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1072 d~eeR~eIL~~----ll-------~k~~l~---~dvdl~~LA~~--teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+.++..+|+.. ++ ...++. .+.-+..|++. ..++..+.|+.+++......+.++...
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~ 385 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR 385 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc
Confidence 99999999972 33 223333 23336677775 346778999999999998888888753
No 94
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=1.1e-13 Score=172.75 Aligned_cols=196 Identities=19% Similarity=0.305 Sum_probs=140.6
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEec
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISM 969 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id~ 969 (1138)
++.++|.+...+.+.+.+.. +...++||+||||||||++|+++|... +..++.++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 45677888888777776642 112578999999999999999999875 455666666
Q ss_pred cccc--cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEe
Q 001150 970 SSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 970 seL~--s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaT 1047 (1138)
..+. ..+.|+.+..++.+|..+.+..++||||||||.|++.+...........++..++ ....+.+|++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEec
Confidence 6554 3577888999999999998888999999999999876543222222222222222 1367899999
Q ss_pred cCCCC-----CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcc-----cHHHHHHHcC-----CCcHHHHHH
Q 001150 1048 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDV-----DFDAIANMTD-----GYSGSDLKN 1112 (1138)
Q Consensus 1048 TN~p~-----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dv-----dl~~LA~~te-----GySgaDL~~ 1112 (1138)
|+.++ ..|++|.||| ..|.|+.|+.+++.+|++.+..+.....++ .+..++.++. .+-+.....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 98754 6799999999 589999999999999999877654333222 2344444444 344557778
Q ss_pred HHHHHHH
Q 001150 1113 LCVTAAH 1119 (1138)
Q Consensus 1113 L~~~Aa~ 1119 (1138)
++.+|+.
T Consensus 401 lldea~a 407 (758)
T PRK11034 401 VIDEAGA 407 (758)
T ss_pred HHHHHHH
Confidence 8888775
No 95
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.5e-14 Score=157.23 Aligned_cols=214 Identities=21% Similarity=0.305 Sum_probs=161.6
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
-++||++.... -...-.|.+..-+||++++++. +-=-..+...||+|||| .+++.||+|.|...||.+|.+-++
T Consensus 127 ~~~s~~~~ggl--~~qirelre~ielpl~np~lf~--rvgIk~Pkg~ll~GppG--tGKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 127 RNISFENVGGL--FYQIRELREVIELPLTNPELFL--RVGIKPPKGLLLYGPPG--TGKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred cccCHHHhCCh--HHHHHHHHhheEeeccCchhcc--ccCCCCCceeEEeCCCC--CchhHHHHHHHHhcCCceEEeeHh
Confidence 35678886543 3455678899999999999963 21235678899999999 899999999999999999988763
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 001150 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1138)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1138)
-|-.
T Consensus 201 ~lv~---------------------------------------------------------------------------- 204 (388)
T KOG0651|consen 201 ALVD---------------------------------------------------------------------------- 204 (388)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 2211
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 001150 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1138)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1138)
+|+|
T Consensus 205 ---------kyiG------------------------------------------------------------------- 208 (388)
T KOG0651|consen 205 ---------KYIG------------------------------------------------------------------- 208 (388)
T ss_pred ---------hhcc-------------------------------------------------------------------
Confidence 2333
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhc--------CCcchhhHHHHHHhcC-----CCcEEEEe
Q 001150 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL-----PDKVIVIG 695 (1138)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~--------~~~~~~~~lk~~L~~l-----~g~VvvIG 695 (1138)
| ..++|+..|..+.. .+||||||||||-+.+ .+.+.-..|-+.|+.. -++|-+|.
T Consensus 209 -------E--saRlIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 209 -------E--SARLIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred -------c--HHHHHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 2 45689999999999 9999999999998765 2223333333333333 36999999
Q ss_pred ecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 001150 696 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 775 (1138)
Q Consensus 696 stt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~ 775 (1138)
+||++|.-||+ |-|||| +++.++|++|++..|+.|+|.|
T Consensus 277 atNrpdtLdpa-------LlRpGR----------------------------------ldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 277 ATNRPDTLDPA-------LLRPGR----------------------------------LDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred ecCCccccchh-------hcCCcc----------------------------------ccceeccCCcchhhceeeEeec
Confidence 99999988999 899999 6678999999999999999987
Q ss_pred hhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccc
Q 001150 776 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 817 (1138)
Q Consensus 776 L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls 817 (1138)
-.. +...-.+++.+.+--.-++.|+||+.+|+++-++.
T Consensus 316 ~~~----i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa 353 (388)
T KOG0651|consen 316 VQP----IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFA 353 (388)
T ss_pred ccc----ccccccccHHHHHHHHhccChHHHhhhcccccccc
Confidence 654 22233344444444557999999999999987654
No 96
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.8e-13 Score=166.00 Aligned_cols=184 Identities=22% Similarity=0.259 Sum_probs=133.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCce-------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 964 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~f------------- 964 (1138)
.+|++|+|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+++.-
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 6899999999999999988763 12234579999999999999999999997641
Q ss_pred -----------EEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 965 -----------INISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 965 -----------i~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
+.++..+ ...-..++.+...+. .....|+||||+|.|- ...++.|+.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLK 141 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLK 141 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 1111110 011223455444443 2345799999999882 345566666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.|+.. ..++++|++|+.+..|.+.+++|+ .++.|..++.++..++++.++..+++. .+..+..|+..+.| +.+
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 356777778888888999999999 889999999999999999999877655 33457888888887 556
Q ss_pred HHHHHHHHHH
Q 001150 1109 DLKNLCVTAA 1118 (1138)
Q Consensus 1109 DL~~L~~~Aa 1118 (1138)
++.++|..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 97
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.4e-13 Score=161.56 Aligned_cols=185 Identities=22% Similarity=0.238 Sum_probs=136.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~--------------- 962 (1138)
.+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 5799999999999999998862 233467899999999999999999999965
Q ss_pred ---------ceEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 963 ---------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
.++.++.++- ..-..++.+...+.. ....|+||||+|.|- ....+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 3444444321 112335555544422 245799999999882 123455666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.++.. ...+.+|++|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|+..+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 345677778888888889999999 789999999999999999999988766 34457788888877 666
Q ss_pred HHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAH 1119 (1138)
Q Consensus 1109 DL~~L~~~Aa~ 1119 (1138)
++.+++..+..
T Consensus 215 dALnLLDQaIa 225 (702)
T PRK14960 215 DALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 98
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.2e-14 Score=162.46 Aligned_cols=110 Identities=23% Similarity=0.344 Sum_probs=99.5
Q ss_pred ccCCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEE-----------ecCCceEEEEEEeCCC
Q 001150 122 ETSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHV-----------QSEGSAVAMVESIGSK 190 (1138)
Q Consensus 122 ~~~~pWgrL~s~~~~~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~-----------~~~~~~~~~led~s~n 190 (1138)
....||+||+...-..+++++.+++||+||+.+||+.++...+|.+|++|... ..+++.++||+|+|+|
T Consensus 41 ~~~~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~n 120 (475)
T KOG0615|consen 41 ATVKPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRN 120 (475)
T ss_pred ccccchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccC
Confidence 34567999999999999999999999999999999999999999999887653 2345569999999999
Q ss_pred ceEEcCeeccCCCeeEccCCCEEEEeecCCeeEEEEeecch
Q 001150 191 GLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLNE 231 (1138)
Q Consensus 191 Gt~VNg~~~gk~~~~~L~~gDeI~f~~~~~~ayif~~~~~~ 231 (1138)
|||||.+.+|||.+.+|+|||||.++.+..++|+|.++.-.
T Consensus 121 GT~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d 161 (475)
T KOG0615|consen 121 GTFVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRD 161 (475)
T ss_pred cccccHhHhhccccccccCCCEEEeccchhheeeeecccch
Confidence 99999999999999999999999999999999999998433
No 99
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=9e-13 Score=157.37 Aligned_cols=185 Identities=18% Similarity=0.211 Sum_probs=132.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 962 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-------------- 962 (1138)
..+|+|++|++.+.+.|...+.. .+.++.+||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 35799999999999998887752 223457999999999999999999999865
Q ss_pred ----------ceEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 963 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 963 ----------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
.++.++++.- ..-..++.+...+... ...||||||+|.|. ...++.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 3455544321 1123345555544322 35799999999872 22344555
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..++.. ...+++|++|+.+..+.+++++|| .++.|..++.++...+++..+...++. ++..+..|+..+.|- .
T Consensus 139 k~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd-l 212 (472)
T PRK14962 139 KTLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG-L 212 (472)
T ss_pred HHHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-H
Confidence 555543 345777777777889999999999 689999999999999999999877654 344578888888764 4
Q ss_pred HHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAA 1118 (1138)
Q Consensus 1108 aDL~~L~~~Aa 1118 (1138)
+.+.++++.++
T Consensus 213 R~aln~Le~l~ 223 (472)
T PRK14962 213 RDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=7.5e-13 Score=162.03 Aligned_cols=184 Identities=23% Similarity=0.285 Sum_probs=134.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|++++|++.+.+.|...+.. .+-.+.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5899999999999999988863 1223458999999999999999999999663
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
|+.++..+- ..-..++.+...+. .....|+||||+|.|- ...+|.||.
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHH
Confidence 233333210 11223444444432 2356799999999882 234566666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.|+.- ...+.+|.+|+.+..|.+.+++|| ..+.|..++.++....++.++..+++. .+..+..|+..++| +.+
T Consensus 142 tLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 356778888888999999999998 899999999999999999999887765 33457788888887 555
Q ss_pred HHHHHHHHHH
Q 001150 1109 DLKNLCVTAA 1118 (1138)
Q Consensus 1109 DL~~L~~~Aa 1118 (1138)
+..+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 6667776544
No 101
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=5.3e-13 Score=169.32 Aligned_cols=196 Identities=20% Similarity=0.311 Sum_probs=141.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEE
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~I 967 (1138)
-.+++++|.++....+.+.+.. +..+++||+||||||||++|+.+|+.+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3577889998877666665531 122579999999999999999999987 3557888
Q ss_pred ecccccc--ccccchHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEE
Q 001150 968 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1138)
Q Consensus 968 d~seL~s--~~iG~~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLV 1044 (1138)
++..+.. .+.|+.+..++.+|..+++. .+.|||||||+.|.+.+...+...+. +.|.-.+ .+..+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEE
Confidence 8877653 57788999999999998753 67999999999998755332222222 2222222 2357889
Q ss_pred EEecCCC-----CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcCCCcH-----HH
Q 001150 1045 LAATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYSG-----SD 1109 (1138)
Q Consensus 1045 IaTTN~p-----~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~----~l~-~dvdl~~LA~~teGySg-----aD 1109 (1138)
||||+.. ..+|++|.||| ..|.|+.|+.+++.+||+.+.... ++. .+..+..++.++++|-. .-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 9988763 46899999999 589999999999999987766542 222 45557888888887643 33
Q ss_pred HHHHHHHHH
Q 001150 1110 LKNLCVTAA 1118 (1138)
Q Consensus 1110 L~~L~~~Aa 1118 (1138)
...|+.+|+
T Consensus 399 AIdlldea~ 407 (852)
T TIGR03345 399 AVSLLDTAC 407 (852)
T ss_pred HHHHHHHHH
Confidence 344555543
No 102
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=4.4e-13 Score=155.42 Aligned_cols=179 Identities=26% Similarity=0.375 Sum_probs=130.3
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-cccc-c
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 979 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG-~ 979 (1138)
-++|+++.++.+...+.....+...........++++|||+||||+|||++|++||..++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3679999999998777643322211111111223479999999999999999999999999999999988863 6888 4
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001150 980 GEKYVKAVFSLAS------------------------------------------------------------------- 992 (1138)
Q Consensus 980 ~E~~I~~lF~~A~------------------------------------------------------------------- 992 (1138)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666666666550
Q ss_pred ------------------------------------------------------------------------ccCCeEEE
Q 001150 993 ------------------------------------------------------------------------KIAPSVIF 1000 (1138)
Q Consensus 993 ------------------------------------------------------------------------k~~PsIIf 1000 (1138)
....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01457999
Q ss_pred EcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc------cCCCCEEEEEecC----CCCCCcHHHHhcCCceEEecC
Q 001150 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATN----RPFDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~------~~~~~VLVIaTTN----~p~~Ld~aLlrRFd~~I~v~l 1070 (1138)
|||||.++.+..+.+..-.-.-+.+.||..+.|-.. -+..++++|++.. .|.+|-|+|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999986542211111223467778887777322 2447899998763 578899999999999999999
Q ss_pred CCHHHHHHHH
Q 001150 1071 PDAPNRAKIL 1080 (1138)
Q Consensus 1071 Pd~eeR~eIL 1080 (1138)
++.++..+||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999999888
No 103
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.47 E-value=5.6e-13 Score=161.68 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=131.6
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEE
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~I 967 (1138)
.+|++++|.+...+.|+..+.. ..+.++||+||||||||++|+++++.+ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 5799999999999888865431 112579999999999999999998753 4689999
Q ss_pred ecccc-------ccccccchHH--HH-HHHHH----------HHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHH
Q 001150 968 SMSSI-------TSKWFGEGEK--YV-KAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1138)
Q Consensus 968 d~seL-------~s~~iG~~E~--~I-~~lF~----------~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~L 1027 (1138)
++... ....++.... +. ...|. ...+...++||||||+.| +...+..+.+++++-
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----HPVQMNKLLKVLEDR 202 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----CHHHHHHHHHHHHhC
Confidence 98642 1111111000 00 00000 111234589999999988 222223332222221
Q ss_pred HHHhcC-----CC------------ccCCCC-EEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCC
Q 001150 1028 MVNWDG-----LR------------TKDTER-ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1089 (1138)
Q Consensus 1028 L~~Ldg-----l~------------~~~~~~-VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l 1089 (1138)
...+.. .. ..-... .+|++||+.++.+++++++|| ..+.|+.++.+++.+|++..+++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i 281 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGI 281 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 111110 00 000122 455566788999999999999 67889999999999999999988775
Q ss_pred C-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1090 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1090 ~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
. ++..++.|+..+. +++++.++++.|+..+..
T Consensus 282 ~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 282 NLEKHALELIVKYAS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh
Confidence 5 3333566666553 789999999999877654
No 104
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.4e-12 Score=149.46 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=133.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999988752 1233568999999999999999999998642
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
++.++... ...-..++.+.+.+... ...|+||||+|.+- ....+.|+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk 141 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLK 141 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHH
Confidence 22222111 01223455665554332 34699999999872 123345665
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.++.. ...+.+|.+|+.++.+.+.+++|+ ..+.|..++.++..++++..+++.++. ++..+..++..+.| +.+
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55543 345677777788888999999999 789999999999999999999887754 44557778888877 666
Q ss_pred HHHHHHHHHH
Q 001150 1109 DLKNLCVTAA 1118 (1138)
Q Consensus 1109 DL~~L~~~Aa 1118 (1138)
++.++++.++
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 105
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=8.9e-13 Score=158.86 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=137.2
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|+|++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 5799999999999999998853 2233568999999999999999999999653
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
+++++...- ..-..++.+.+.+.. ....|+||||+|.|- ...++.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHH
Confidence 444544321 122234555544432 245799999999882 223455666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++.++.++++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66553 345777777788888888999999 788999999999999999999888766 34457788888876 677
Q ss_pred HHHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAHR 1120 (1138)
Q Consensus 1109 DL~~L~~~Aa~~ 1120 (1138)
++.++++.++..
T Consensus 216 ~al~lLdq~ia~ 227 (509)
T PRK14958 216 DALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHhc
Confidence 888888766543
No 106
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=5e-13 Score=155.08 Aligned_cols=179 Identities=23% Similarity=0.371 Sum_probs=130.4
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-cccc-c
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 979 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG-~ 979 (1138)
.++|++++++.+..++.....+...........++.++||+||||+|||++|++||+.++.+|+.++++.+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3679999999998887643222111111111122478999999999999999999999999999999998874 6888 4
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001150 980 GEKYVKAVFSLAS------------------------------------------------------------------- 992 (1138)
Q Consensus 980 ~E~~I~~lF~~A~------------------------------------------------------------------- 992 (1138)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666677766661
Q ss_pred ---c--------------------------------------------------------------------cCCeEEEE
Q 001150 993 ---K--------------------------------------------------------------------IAPSVIFV 1001 (1138)
Q Consensus 993 ---k--------------------------------------------------------------------~~PsIIfI 1001 (1138)
. ...+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13569999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc------cCCCCEEEEEec----CCCCCCcHHHHhcCCceEEecCC
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~------~~~~~VLVIaTT----N~p~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
||||.++.+..+.+..-.-.-+.+.||..+.|-.. -+..++++|++. ..|.+|-|+|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986643221111223467778888777322 234789999875 35778899999999999999999
Q ss_pred CHHHHHHHH
Q 001150 1072 DAPNRAKIL 1080 (1138)
Q Consensus 1072 d~eeR~eIL 1080 (1138)
+.++..+||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999999888
No 107
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-12 Score=155.69 Aligned_cols=213 Identities=21% Similarity=0.366 Sum_probs=144.0
Q ss_pred ccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc--------
Q 001150 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 972 (1138)
Q Consensus 901 dDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL-------- 972 (1138)
+|-.|++++|+++.+++.-- +.......+-+.|+||||+|||++|+.||..+|..|++++...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 35579999999999988631 11111222357899999999999999999999999999986543
Q ss_pred -ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchH-HHHHHHHH-----HHHHHhcCCCccCCCCEEEE
Q 001150 973 -TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH-EAMRKMKN-----EFMVNWDGLRTKDTERILVL 1045 (1138)
Q Consensus 973 -~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~-~al~~il~-----~LL~~Ldgl~~~~~~~VLVI 1045 (1138)
..-|+|...+.+-+......-..| +++|||||.+. +...+++ .++-.++. .|+...-..+. +-.+|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEE
Confidence 224888888888887777766554 78899999996 2222222 23332221 12222222222 23689999
Q ss_pred EecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh-----CCCCCc-cc--HHHHHHHcCCCc--------HHH
Q 001150 1046 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-----EDLSPD-VD--FDAIANMTDGYS--------GSD 1109 (1138)
Q Consensus 1046 aTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k-----~~l~~d-vd--l~~LA~~teGyS--------gaD 1109 (1138)
+|+|..+.|++.++.|+ .+|.+.-+..++..+|.+.+|-. .++.++ ++ -..+-.+.+.|. -..
T Consensus 559 cTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~ 637 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQ 637 (906)
T ss_pred EeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999 89999999999999999988743 334321 11 122222222222 245
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001150 1110 LKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1110 L~~L~~~Aa~~ai~eii 1126 (1138)
|..+|+.+|..-++..-
T Consensus 638 iekI~Rk~Al~vv~~~~ 654 (906)
T KOG2004|consen 638 IEKICRKVALKVVEGEN 654 (906)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66667777766665553
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=5.6e-13 Score=169.44 Aligned_cols=164 Identities=21% Similarity=0.348 Sum_probs=125.9
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id 968 (1138)
.+++++|.++..+.+.+.+.. +..+++||+||||+|||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 466788998877766665542 122579999999999999999999988 78899998
Q ss_pred ccccc--cccccchHHHHHHHHHHHhc-cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEE
Q 001150 969 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1138)
Q Consensus 969 ~seL~--s~~iG~~E~~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVI 1045 (1138)
+..+. .++.|+.+..++.+|..+.+ ..+.|||||||+.|.+.....+...+.+ .|...+ .+..+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~----~lkp~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN----MLKPAL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH----Hhcchh------hcCCCeEE
Confidence 88875 45778899999999988654 4689999999999987654333333222 222111 24678999
Q ss_pred EecCCCC-----CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC
Q 001150 1046 AATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE 1087 (1138)
Q Consensus 1046 aTTN~p~-----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~ 1087 (1138)
|+|+..+ .+|+++.|||+ .|.+..|+.+++..|++.+....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9998765 58999999995 68899999999999999887653
No 109
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.5e-12 Score=156.41 Aligned_cols=215 Identities=22% Similarity=0.332 Sum_probs=146.6
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc---------
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI--------- 972 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL--------- 972 (1138)
|=.|++++|+++.+++.-+... ..... .-++|+||||+|||+|++.||+.++..|++++..-+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~------~~~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT------KKLKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh------ccCCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 4469999999999988643222 11111 257899999999999999999999999999997543
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHH-----HHHHHhcCCCccCCCCEEEEEe
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~-----~LL~~Ldgl~~~~~~~VLVIaT 1047 (1138)
..-|+|..++.+-+-...|....| |++|||||.|... .......++-.++. .|....-..+. +-..|+||+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 234889999988888888887665 7889999999533 22222234333331 22222212211 2268999999
Q ss_pred cCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHH-----hhCCCCC-c--ccHHHHHHHcCCCcH----HHHHHHHH
Q 001150 1048 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL-----AKEDLSP-D--VDFDAIANMTDGYSG----SDLKNLCV 1115 (1138)
Q Consensus 1048 TN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll-----~k~~l~~-d--vdl~~LA~~teGySg----aDL~~L~~ 1115 (1138)
+|..+.++..++.|+ .+|.+.-.+.++..+|.+.++ +..++.. + +.-+.|-.+...|+. +.|+.-+.
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ 551 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIA 551 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHH
Confidence 999999999999999 899999999999999998876 3344442 1 222334444444443 44444444
Q ss_pred HHHHHHHHHHHHh
Q 001150 1116 TAAHRPIKEILEK 1128 (1138)
Q Consensus 1116 ~Aa~~ai~eiie~ 1128 (1138)
..+..+++++++.
T Consensus 552 ki~RK~~~~i~~~ 564 (782)
T COG0466 552 KICRKAAKKILLK 564 (782)
T ss_pred HHHHHHHHHHHhc
Confidence 4455555565553
No 110
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=9e-13 Score=167.45 Aligned_cols=196 Identities=22% Similarity=0.349 Sum_probs=144.2
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id 968 (1138)
.++.++|.++..+.+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 466788999999988887752 233589999999999999999999987 47899999
Q ss_pred ccccc--cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEE
Q 001150 969 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1138)
Q Consensus 969 ~seL~--s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIa 1046 (1138)
+..+. .+|.|+.+..++.+|..+....+.|||||||+.|++.....+...+. +.|...+ .+..+.+||
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a----~lLkp~l------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA----NILKPAL------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH----HHhHHHH------hCCCcEEEE
Confidence 98875 46788999999999999988889999999999998765433322222 2222112 135688888
Q ss_pred ecCCC-----CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHcCCCcH-----HHHH
Q 001150 1047 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYSG-----SDLK 1111 (1138)
Q Consensus 1047 TTN~p-----~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k----~~l~-~dvdl~~LA~~teGySg-----aDL~ 1111 (1138)
+|+.. ...++++.+|| ..|.+..|+.++...|++.+... .++. ++..+..++.++.+|.+ .-..
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH
Confidence 88865 35789999999 56899999999999998876532 2332 44457778888887654 2333
Q ss_pred HHHHHHHH
Q 001150 1112 NLCVTAAH 1119 (1138)
Q Consensus 1112 ~L~~~Aa~ 1119 (1138)
.|+.+|+.
T Consensus 392 dlld~a~a 399 (821)
T CHL00095 392 DLLDEAGS 399 (821)
T ss_pred HHHHHHHH
Confidence 45555443
No 111
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.45 E-value=1.4e-12 Score=166.21 Aligned_cols=196 Identities=21% Similarity=0.348 Sum_probs=142.0
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id 968 (1138)
.++.++|.++..+.+.+.+.. +..+++||+||||+|||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 466788988877777666542 223578999999999999999999986 67888888
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEE
Q 001150 969 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1138)
Q Consensus 969 ~seL~--s~~iG~~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVI 1045 (1138)
+..+. ..+.|+.+..+..+|..+.+. .+.|||||||+.|++.....+...+ .+.|...+ ....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDA----GNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHH----HHHhchhh------hcCceEEE
Confidence 88775 467788899999999988664 5899999999999864433222222 22222111 23578899
Q ss_pred EecCCC-----CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-----CcccHHHHHHHcCCCcH-----HHH
Q 001150 1046 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTDGYSG-----SDL 1110 (1138)
Q Consensus 1046 aTTN~p-----~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-----~dvdl~~LA~~teGySg-----aDL 1110 (1138)
|+|+.. ..+|+++.||| ..|.++.|+.+++..|++.+....... .+..+..++.++.+|-. .-.
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 998865 46899999999 568999999999999999887664332 34456777777776643 344
Q ss_pred HHHHHHHHH
Q 001150 1111 KNLCVTAAH 1119 (1138)
Q Consensus 1111 ~~L~~~Aa~ 1119 (1138)
..|+.+|+.
T Consensus 386 idlld~a~a 394 (852)
T TIGR03346 386 IDLIDEAAA 394 (852)
T ss_pred HHHHHHHHH
Confidence 455555543
No 112
>PLN03025 replication factor C subunit; Provisional
Probab=99.45 E-value=2.3e-12 Score=147.06 Aligned_cols=182 Identities=21% Similarity=0.222 Sum_probs=125.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CceEEEeccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 971 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-----~~fi~Id~se 971 (1138)
..+|+|+.|.+++.+.|+.++.. . ...++||+||||+|||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 35799999999999999887652 1 123799999999999999999999982 2356666554
Q ss_pred cccccccchHHHHHHHHHH-Hh------ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEE
Q 001150 972 ITSKWFGEGEKYVKAVFSL-AS------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~-A~------k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLV 1044 (1138)
..+ -..++..... +. ...+.||+|||+|.|. ...+. .|+..++.. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~-------aL~~~lE~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQ-------ALRRTMEIY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHH-------HHHHHHhcc----cCCceE
Confidence 322 1123322221 11 1246799999999883 22222 233333322 133456
Q ss_pred EEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001150 1045 LAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1138)
Q Consensus 1045 IaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~ 1116 (1138)
|.+||....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..+..|+..+.| ..+.+.+.++.
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~ 203 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQA 203 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 678888888999999998 689999999999999999999888765 44557888887776 33445555553
No 113
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=1.4e-12 Score=152.67 Aligned_cols=226 Identities=20% Similarity=0.280 Sum_probs=151.1
Q ss_pred ccchHHHHHHHHHHHhcccCchhhh-hc---CCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-ccc
Q 001150 903 IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWF 977 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f-~~---~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~i 977 (1138)
++|+++.++.+...+.....+.... .. ..+.....++||+||||+|||++|+++|..++.+|+.+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 5799999999887774322221110 00 011122358999999999999999999999999999999888753 577
Q ss_pred cch-HHHHHHHHHHH----hccCCeEEEEcCCcccccCCCCcchHH-H-HHHHHHHHHHHhcCCCc---------cCCCC
Q 001150 978 GEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHE-A-MRKMKNEFMVNWDGLRT---------KDTER 1041 (1138)
Q Consensus 978 G~~-E~~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~~-a-l~~il~~LL~~Ldgl~~---------~~~~~ 1041 (1138)
|.. +..+..++..+ .+..++||||||||.+..++.++.... + ...+.+.||+.|++... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 44445544432 334678999999999976443322111 1 12466777777765431 12346
Q ss_pred EEEEEecCCC---------------------------C-----------------------CCcHHHHhcCCceEEecCC
Q 001150 1042 ILVLAATNRP---------------------------F-----------------------DLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1042 VLVIaTTN~p---------------------------~-----------------------~Ld~aLlrRFd~~I~v~lP 1071 (1138)
.++|+|+|-. + .+.|+|+.|++.++.|...
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 7888887751 0 1447888899999999999
Q ss_pred CHHHHHHHHHHH----Hhh-------CCCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1072 DAPNRAKILQVI----LAK-------EDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1072 d~eeR~eIL~~l----l~k-------~~l~---~dvdl~~LA~~--teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+.++..+|+..- ++. .++. .+.-++.|++. ...+..+.|+.+++......+-++...
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~ 391 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL 391 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC
Confidence 999999998762 221 1332 22336677765 336778999999999888888777653
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.9e-12 Score=153.84 Aligned_cols=187 Identities=21% Similarity=0.282 Sum_probs=138.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|+|++|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 45899999999999999887652 2334689999999999999999999999652
Q ss_pred ---------------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHH
Q 001150 964 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024 (1138)
Q Consensus 964 ---------------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il 1024 (1138)
++.++..+ ......++.+++.+... ...|+||||+|.+. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 12222111 12234566777666433 35799999999772 2234
Q ss_pred HHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcC
Q 001150 1025 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTD 1103 (1138)
Q Consensus 1025 ~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~te 1103 (1138)
+.|+..++.. ...+++|.+|+.++.+.+.+++|+ .++.|..++.++...+++.+++++++..+ ..+..|+..++
T Consensus 146 naLLk~LEep----p~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEEP----PPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5555555542 356777777888888999999999 78999999999999999999998886533 44788888888
Q ss_pred CCcHHHHHHHHHHHHHH
Q 001150 1104 GYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1104 GySgaDL~~L~~~Aa~~ 1120 (1138)
| +.+++.++++.++..
T Consensus 221 G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 221 G-SARDAVSILDQAASM 236 (507)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 667777777776543
No 115
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.2e-12 Score=157.47 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=137.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|+|++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 5799999999999999998863 2334679999999999999999999998653
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
++.++... ......++.++..+.. ....||||||+|.|- ...++.|+.
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLK 141 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLK 141 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHH
Confidence 12222111 1122346666655432 245799999999772 223455666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.|+.. ...+.+|.+|+.+..+.+.+++|| ..+.|..++.++...+++.++.++++. .+..+..|++.+.| +.+
T Consensus 142 tLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 66553 356777888888999999999999 778899999999999999999988876 33447888888876 677
Q ss_pred HHHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAHR 1120 (1138)
Q Consensus 1109 DL~~L~~~Aa~~ 1120 (1138)
++.++++.++..
T Consensus 216 dAlnLLDqaia~ 227 (709)
T PRK08691 216 DALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHh
Confidence 888888776553
No 116
>PRK04195 replication factor C large subunit; Provisional
Probab=99.44 E-value=3e-12 Score=153.91 Aligned_cols=183 Identities=26% Similarity=0.367 Sum_probs=129.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~ 976 (1138)
..++++++|.+.+++.|..++.... + .++.+++||+||||+|||++|+++|++++++++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 3579999999999999999886322 1 2345789999999999999999999999999999998764321
Q ss_pred ccchHHHHHHHHHHHhc------cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 977 FGEGEKYVKAVFSLASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 977 iG~~E~~I~~lF~~A~k------~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
..+..+...+.. ..+.||+|||+|.+.+... ....+.|+..++. .+..+|+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHHHHHHHHHc------CCCCEEEeccC
Confidence 223333332222 2578999999998853211 1122333333432 22345667888
Q ss_pred CCCCcH-HHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHH
Q 001150 1051 PFDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDL 1110 (1138)
Q Consensus 1051 p~~Ld~-aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL 1110 (1138)
+..+.. .+++|+ ..|.|+.|+.+++..+++.++...++. ++..+..|+..+.|.-...|
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 888887 666666 789999999999999999999887765 34457888888776444333
No 117
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.6e-12 Score=153.34 Aligned_cols=186 Identities=21% Similarity=0.246 Sum_probs=139.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~--------------- 962 (1138)
.+|+|++|++.+.+.|+..+.. .+.++++||+||+|+|||++|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 5899999999999999887752 233468999999999999999999997643
Q ss_pred ---------ceEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 963 ---------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
.++++++++- ..-..++.+.+.+... .+.|++|||+|.|- ...++.|+.
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK 138 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLK 138 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHH
Confidence 3455555431 1223466666665433 45799999999872 234556666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++.++.++++. ++..+..|++.+.| +.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 345777777888888999999999 789999999999999999999988776 44557788888876 667
Q ss_pred HHHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAHR 1120 (1138)
Q Consensus 1109 DL~~L~~~Aa~~ 1120 (1138)
++.++++.++..
T Consensus 213 ~alslLdqli~y 224 (491)
T PRK14964 213 NALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHh
Confidence 788888776653
No 118
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.43 E-value=3.4e-12 Score=150.65 Aligned_cols=180 Identities=25% Similarity=0.424 Sum_probs=127.4
Q ss_pred cccccccchHHHHHH---HHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 898 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~---L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+++|++|.+++... |...+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 468899999998665 7776642 112489999999999999999999999999999987542
Q ss_pred ccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec--
Q 001150 975 KWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1048 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT-- 1048 (1138)
....++.++..+. .....||||||||.+. ....+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhc------CcEEEEEeCCC
Confidence 1233455555553 2256899999999872 1122334444432 345666554
Q ss_pred CCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC--CC-C-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--DL-S-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~--~l-~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
|....+++++++|| .++.|..++.++...+++..+... ++ . .+..++.|++.+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33468899999999 789999999999999999987652 22 2 23346778888866 5566777777763
No 119
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=3.3e-12 Score=149.43 Aligned_cols=191 Identities=16% Similarity=0.236 Sum_probs=127.4
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceE-------------
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 965 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi------------- 965 (1138)
.|++|+|++.+++.|++.+......+..+ + .+.++.+||+||+|+|||++|+++|..+.+.-.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 48899999999999999997543322111 1 123467999999999999999999998855310
Q ss_pred --EEecccccc---ccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc
Q 001150 966 --NISMSSITS---KWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1036 (1138)
Q Consensus 966 --~Id~seL~s---~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~ 1036 (1138)
.-+.+++.- .-..-.-..++.+++.+... ...|+||||+|.|- ....+.|+..|+..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcC--
Confidence 000111100 00001123467777777653 34699999999882 12235566666553
Q ss_pred cCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHH
Q 001150 1037 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1037 ~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~ 1114 (1138)
..++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. ..++. ......++..+.|..+..+..+.
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 234555555666899999999999 7999999999988777763 22333 34567889999998886665543
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.8e-12 Score=154.70 Aligned_cols=184 Identities=20% Similarity=0.259 Sum_probs=134.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|+|++|++.+.+.|+..+.. .+-++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 5799999999999999998863 1223568999999999999999999998652
Q ss_pred ---------------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHH
Q 001150 964 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024 (1138)
Q Consensus 964 ---------------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il 1024 (1138)
++.++..+ ...-..++.+.+.+... ...|++|||+|.|- ...+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~ 141 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAF 141 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHH
Confidence 22332221 11123455665554332 35699999999882 2235
Q ss_pred HHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcC
Q 001150 1025 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTD 1103 (1138)
Q Consensus 1025 ~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~te 1103 (1138)
|.|+..++.. ...+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++.. +..+..|+..+.
T Consensus 142 NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5666666553 356777777788888888999999 8899999999999999999998888763 344788888888
Q ss_pred CCcHHHHHHHHHHHH
Q 001150 1104 GYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1104 GySgaDL~~L~~~Aa 1118 (1138)
| +.+++.+++..+.
T Consensus 217 G-slR~al~lLdq~i 230 (618)
T PRK14951 217 G-SMRDALSLTDQAI 230 (618)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6667777776554
No 121
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.41 E-value=6.4e-12 Score=140.44 Aligned_cols=175 Identities=27% Similarity=0.467 Sum_probs=123.3
Q ss_pred cccccccchHHHHHH---HHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc---eEEEeccc
Q 001150 898 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 971 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~---L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~---fi~Id~se 971 (1138)
.+++|++|++++..+ |+.++. + ..+.+++||||||||||+||+.||....-+ |+.++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie----------q----~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE----------Q----NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH----------c----CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 467888888776533 333333 1 223689999999999999999999998655 77776543
Q ss_pred cccccccchHHHHHHHHHHHhcc-----CCeEEEEcCCcccccCCCCcchHHHHHHHHH-HHHHHhcCCCccCCCCEEEE
Q 001150 972 ITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKN-EFMVNWDGLRTKDTERILVL 1045 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~~~~~~al~~il~-~LL~~Ldgl~~~~~~~VLVI 1045 (1138)
....-++.+|+.+++. ...|||||||+++ ++..+ .|| +..+...|++|
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-------------NksQQD~fL------P~VE~G~I~lI 254 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-------------NKSQQDTFL------PHVENGDITLI 254 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-------------hhhhhhccc------ceeccCceEEE
Confidence 3345688888888654 4689999999977 22222 232 22244678888
Q ss_pred Eec--CCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC--------CCC------CcccHHHHHHHcCCCcHHH
Q 001150 1046 AAT--NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--------DLS------PDVDFDAIANMTDGYSGSD 1109 (1138)
Q Consensus 1046 aTT--N~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~--------~l~------~dvdl~~LA~~teGySgaD 1109 (1138)
++| |..+.|..++++|| .++.+.....+....|+.+-+.-. ++. .+--++.|+..++|-....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 776 45578999999999 788888888999998888855421 111 1223788999999988877
Q ss_pred HHHH
Q 001150 1110 LKNL 1113 (1138)
Q Consensus 1110 L~~L 1113 (1138)
|..|
T Consensus 334 LN~L 337 (554)
T KOG2028|consen 334 LNAL 337 (554)
T ss_pred HHHH
Confidence 7554
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=7.1e-12 Score=151.41 Aligned_cols=184 Identities=21% Similarity=0.273 Sum_probs=131.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~--------------- 962 (1138)
.+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 5799999999999999988752 123356899999999999999999998864
Q ss_pred ---------ceEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 963 ---------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
.++.++...- .| -..++.+...+.. ....|+||||+|.|- ....+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHH
Confidence 2333332211 11 1233444444432 245799999999872 234456666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.|+.. ...+.+|++|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 245666766777888888899999 899999999999999999999887765 34446778888876 566
Q ss_pred HHHHHHHHHH
Q 001150 1109 DLKNLCVTAA 1118 (1138)
Q Consensus 1109 DL~~L~~~Aa 1118 (1138)
++.++++.++
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 6777776554
No 123
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.41 E-value=8.1e-12 Score=135.94 Aligned_cols=190 Identities=22% Similarity=0.331 Sum_probs=141.0
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~ 973 (1138)
.+.++++.|++..++.|.+.... |.+ ..|.+++||+|++|||||++++++.+++ |..+|.+.-.++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 57899999999999999887753 333 3577899999999999999999999988 7888888766653
Q ss_pred cccccchHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
. +..++...+.. .+-|||+|++- + ... ..-...|...|+|.....+.+|+|.||+|+.+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs--F----e~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS--F----EEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC--C----CCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 55666665543 45799999874 2 111 12235566778887777789999999999843
Q ss_pred CCc---------------H--------HHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHH----HHHHcCC
Q 001150 1053 DLD---------------E--------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDA----IANMTDG 1104 (1138)
Q Consensus 1053 ~Ld---------------~--------aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~----LA~~teG 1104 (1138)
.+. + .+..||+.++.|..|+.++-.+|++.++...++.-+ .++.. .|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 221 1 344599999999999999999999999998887644 23332 3334457
Q ss_pred CcHHHHHHHHHH
Q 001150 1105 YSGSDLKNLCVT 1116 (1138)
Q Consensus 1105 ySgaDL~~L~~~ 1116 (1138)
.||+-.++.+..
T Consensus 233 RSGRtA~QF~~~ 244 (249)
T PF05673_consen 233 RSGRTARQFIDD 244 (249)
T ss_pred CCHHHHHHHHHH
Confidence 899877777654
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.3e-12 Score=153.77 Aligned_cols=185 Identities=21% Similarity=0.270 Sum_probs=135.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|+|++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999988863 2333568999999999999999999999652
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
++.++... ...-..++.+...+... ...|+||||+|.|- ....|.|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK 141 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLK 141 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHH
Confidence 22222211 11223456666655432 35699999999882 223456666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~teGySga 1108 (1138)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.+..++.++++.. +..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 356777777788888888899999 8899999999999999999998877653 3446778888876 566
Q ss_pred HHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAH 1119 (1138)
Q Consensus 1109 DL~~L~~~Aa~ 1119 (1138)
++.++++.|..
T Consensus 216 ~al~lldqai~ 226 (527)
T PRK14969 216 DALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHH
Confidence 77777765543
No 125
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=8.2e-12 Score=150.33 Aligned_cols=186 Identities=20% Similarity=0.278 Sum_probs=133.9
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|+|++|++.+++.|+.++.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 35799999999999999998863 1233557999999999999999999998531
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33344321 1112334554443332 246799999999762 233455555
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++.+.++. .+..+..|+..+.| ..+
T Consensus 139 ~LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR 212 (504)
T PRK14963 139 TLEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMR 212 (504)
T ss_pred HHHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55542 346777778888899999999999 689999999999999999999988876 34457888888887 445
Q ss_pred HHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAH 1119 (1138)
Q Consensus 1109 DL~~L~~~Aa~ 1119 (1138)
++.++++.+..
T Consensus 213 ~aln~Lekl~~ 223 (504)
T PRK14963 213 DAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHh
Confidence 66666666543
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=6e-12 Score=158.42 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=130.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|++|+|++.+++.|+..+.. .+..+.+||+||+|+|||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 35899999999999999998862 2233568999999999999999999999642
Q ss_pred -------------eEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 001150 964 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1138)
Q Consensus 964 -------------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~ 1030 (1138)
|+.++..... .+......+..++.........|+||||+|.|- ....|.||..
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~NaLLK~ 143 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNALLKI 143 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHHHHHH
Confidence 2333322110 011111112222222233467899999999882 2345566666
Q ss_pred hcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCcHHH
Q 001150 1031 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSD 1109 (1138)
Q Consensus 1031 Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~teGySgaD 1109 (1138)
|+.. ...++||++|+.++.|-+.|++|+ .++.|..++.++..++|+.++.++++.. +..+..|+....| +.++
T Consensus 144 LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~ 217 (824)
T PRK07764 144 VEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRD 217 (824)
T ss_pred HhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 6654 356778888888888999999999 7899999999999999999998887753 3335667777766 4455
Q ss_pred HHHHHHH
Q 001150 1110 LKNLCVT 1116 (1138)
Q Consensus 1110 L~~L~~~ 1116 (1138)
+.++++.
T Consensus 218 Al~eLEK 224 (824)
T PRK07764 218 SLSVLDQ 224 (824)
T ss_pred HHHHHHH
Confidence 5555544
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.2e-11 Score=150.63 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=132.0
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|+|++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 35799999999999999998863 2233458999999999999999999998642
Q ss_pred -------------eEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHH
Q 001150 964 -------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1026 (1138)
Q Consensus 964 -------------fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~ 1026 (1138)
++.++.+... .-..++++.+.+. .....|+||||+|.|- ...++.
T Consensus 76 C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 2233322110 1223344433332 2345799999999882 224556
Q ss_pred HHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCC
Q 001150 1027 FMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGY 1105 (1138)
Q Consensus 1027 LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGy 1105 (1138)
|+..|+.. ...+++|.+|+.+..|.+.+++|+ .++.|..++.++..++++.++.++++. ++..+..++..+.|
T Consensus 138 LLK~LEEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 66666653 356888888888899999999998 789999999999999999999988765 33345667776665
Q ss_pred cHHHHHHHHHHHH
Q 001150 1106 SGSDLKNLCVTAA 1118 (1138)
Q Consensus 1106 SgaDL~~L~~~Aa 1118 (1138)
+.+++.++++.++
T Consensus 212 dlR~aln~Ldql~ 224 (584)
T PRK14952 212 SPRDTLSVLDQLL 224 (584)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666666544
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1e-11 Score=151.53 Aligned_cols=185 Identities=24% Similarity=0.325 Sum_probs=136.5
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 962 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-------------- 962 (1138)
..+|++++|++.+.+.|+..+.. .+..+.+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 35799999999999999998863 223456999999999999999999999853
Q ss_pred ----------ceEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 963 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 963 ----------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
+++.++... +..-..++.+.+.+... ...|+||||+|.|. ...++.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 344444321 12234566666665532 45799999999882 22345666
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~teGySg 1107 (1138)
..++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++.++.+.++.- +..+..|+..+.| +.
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666553 346777777788899999999999 6789999999999999999998887653 3447778888877 66
Q ss_pred HHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAA 1118 (1138)
Q Consensus 1108 aDL~~L~~~Aa 1118 (1138)
+++.++++.+.
T Consensus 215 R~al~~Ldq~~ 225 (559)
T PRK05563 215 RDALSILDQAI 225 (559)
T ss_pred HHHHHHHHHHH
Confidence 66667666553
No 129
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.1e-11 Score=150.88 Aligned_cols=182 Identities=20% Similarity=0.249 Sum_probs=129.1
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|+||+|++.+++.|...+.. .+-...+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 35799999999999999998862 1223589999999999999999999999653
Q ss_pred -----------eEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 964 -----------fi~Id~seL~s~~iG~~E~~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
++.++...- ..-..++.+.+.+ ......||||||+|.|- ...++.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333433210 0112233332222 23346799999999882 22345666
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..++.. ...+++|++|+.+..+.+.+++|+ .++.|..++.++..++++.++.+.++. .+..+..|+..+.|..+
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 666542 246788888888888889999999 678999999999999999998887764 44457888888887444
Q ss_pred HHHHHHHH
Q 001150 1108 SDLKNLCV 1115 (1138)
Q Consensus 1108 aDL~~L~~ 1115 (1138)
++.++++
T Consensus 216 -~Al~lLe 222 (624)
T PRK14959 216 -DSMSLLG 222 (624)
T ss_pred -HHHHHHH
Confidence 4444444
No 130
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.38 E-value=8.4e-12 Score=157.04 Aligned_cols=208 Identities=18% Similarity=0.283 Sum_probs=142.0
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc--------
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 973 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~-------- 973 (1138)
+..|++++|+.+.+++...... . ..+...++|+||||+|||++++.+|..++.+|+++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4789999999998877642211 1 11224699999999999999999999999999999876532
Q ss_pred -cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-----------ccCCCC
Q 001150 974 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----------TKDTER 1041 (1138)
Q Consensus 974 -s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-----------~~~~~~ 1041 (1138)
..|.|...+.+.+.+..+.... .||||||||.+...... . ....|+..++.-. ..+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g-~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG-D-------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC-C-------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 2356666666666666655444 48999999998533111 1 1233444443210 113378
Q ss_pred EEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh-----CCCC---Cccc---HHHHHH-HcCCCcHHH
Q 001150 1042 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-----EDLS---PDVD---FDAIAN-MTDGYSGSD 1109 (1138)
Q Consensus 1042 VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k-----~~l~---~dvd---l~~LA~-~teGySgaD 1109 (1138)
+++|+|+|.. .|+++|++|| .+|.+..++.++..+|++.++.. .++. -.++ +..|++ .+..+..+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred eEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 9999999987 5999999999 68999999999999999988841 1221 1122 444443 233445588
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001150 1110 LKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1110 L~~L~~~Aa~~ai~eiie~ 1128 (1138)
|+.+++..+..++.+.+..
T Consensus 544 LeR~I~~i~r~~l~~~~~~ 562 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLD 562 (784)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888777777766543
No 131
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.5e-11 Score=148.91 Aligned_cols=184 Identities=21% Similarity=0.288 Sum_probs=131.8
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 962 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-------------- 962 (1138)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 35799999999999999987752 223367999999999999999999999853
Q ss_pred ----------ceEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 963 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 963 ----------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
.++.++.... ..-..++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHH
Confidence 2233332210 1123355555555433 34699999999872 12335566
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..++.. +..+++|++|+.+..|.+.+++|+ .++.|..++.++...+++..+.+.++. ++..+..++.++.| +.
T Consensus 141 KtLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 666553 345777778888899999999999 689999999999999999998887754 34457788888887 45
Q ss_pred HHHHHHHHHH
Q 001150 1108 SDLKNLCVTA 1117 (1138)
Q Consensus 1108 aDL~~L~~~A 1117 (1138)
+++.++++.+
T Consensus 215 R~AlnlLekL 224 (605)
T PRK05896 215 RDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHH
Confidence 5565666653
No 132
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.37 E-value=5.7e-12 Score=150.31 Aligned_cols=169 Identities=20% Similarity=0.353 Sum_probs=113.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r 1011 (1138)
++++||||+|+|||+|++++++++ +..++.+++.++...+..........-|....+ .+.+|+||||+.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999998 566888888877654433322111223333333 57899999999885432
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC---CcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhh
Q 001150 1012 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1012 ~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k 1086 (1138)
. ...+|+..++.+... ...+||++...|.. +++.+++||. .++.+..|+.++|..|++..+..
T Consensus 228 ------~----~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ------R----TQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ------H----HHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 112222222222221 23455555555544 6789999995 47889999999999999999987
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1087 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1087 ~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
.++. ++..++.||..+.| +.++|..++.....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 6654 44457888888876 55667766665443
No 133
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.36 E-value=2.6e-11 Score=138.11 Aligned_cols=190 Identities=21% Similarity=0.246 Sum_probs=125.0
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CceEEEeccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 971 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-----~~fi~Id~se 971 (1138)
..+|+++.|.+.+++.|..++.. . + ..++||+||||||||++|+++|+++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~---~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P---N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C---C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 35689999999999999887752 1 1 13699999999999999999999983 3567788766
Q ss_pred cccccc-------------cc-------hHHHHHHHHHHHhc-----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHH
Q 001150 972 ITSKWF-------------GE-------GEKYVKAVFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1026 (1138)
Q Consensus 972 L~s~~i-------------G~-------~E~~I~~lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~ 1026 (1138)
+...+. +. ....++.+...... ..+.+|||||+|.+. . ...+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~-------~~~~~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----E-------DAQQA 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----H-------HHHHH
Confidence 532210 00 01122333222222 235699999999772 1 11223
Q ss_pred HHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCC
Q 001150 1027 FMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGY 1105 (1138)
Q Consensus 1027 LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGy 1105 (1138)
|...++... ....+|.+++.+..+.+.+.+|+ ..+.+..|+.++..++++.++.+.++. ++..+..|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 333333322 22345556666667778888998 678999999999999999999887765 44557778877754
Q ss_pred cHHHHHHHHHHHH
Q 001150 1106 SGSDLKNLCVTAA 1118 (1138)
Q Consensus 1106 SgaDL~~L~~~Aa 1118 (1138)
+.+++.+.++.++
T Consensus 219 dlr~l~~~l~~~~ 231 (337)
T PRK12402 219 DLRKAILTLQTAA 231 (337)
T ss_pred CHHHHHHHHHHHH
Confidence 4445555554433
No 134
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=3.4e-11 Score=138.36 Aligned_cols=186 Identities=24% Similarity=0.342 Sum_probs=133.4
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46799999999999999987752 2233579999999999999999999998432
Q ss_pred -----------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 964 -----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
++.++... ......++.++..+... ...||+|||+|.+- ....+.|+
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 23333221 11223466677666543 34699999999772 12345566
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..++.. ...+++|.+|+.++.+.+.+++|+ ..+.|..|+.++..++++.++.+.++. ++..+..|+..+.| +.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 666553 245777778888888889999999 688999999999999999999887765 33446777887776 55
Q ss_pred HHHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAAH 1119 (1138)
Q Consensus 1108 aDL~~L~~~Aa~ 1119 (1138)
+.+.+.++.++.
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 566666665443
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.35 E-value=9.5e-12 Score=146.38 Aligned_cols=169 Identities=22% Similarity=0.360 Sum_probs=111.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r 1011 (1138)
+.++||||+|+|||+|++++++++ +..++.+++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 577888988776544332211101112222222 36799999999885432
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC---CCcHHHHhcCCc--eEEecCCCHHHHHHHHHHHHhh
Q 001150 1012 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1012 ~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd~--~I~v~lPd~eeR~eIL~~ll~k 1086 (1138)
...+ +|+..++..... ...+||++...|. .+++.+++||.. .+.++.|+.++|..|++..+..
T Consensus 216 ---~~~~-------~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQE-------EFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHH-------HHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1112 222222222111 2345555555554 456889999964 7899999999999999999988
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1087 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1087 ~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
.++. ++..++.||....+ +.++|..++.....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 7665 45557888888876 56677776655443
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.35 E-value=1.2e-11 Score=136.84 Aligned_cols=180 Identities=22% Similarity=0.267 Sum_probs=126.3
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC------ceEEEecc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMS 970 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~------~fi~Id~s 970 (1138)
..+|+++.|++.+.+.|+..+.. +-..++|||||||||||+.|+++|.++.. .+...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999998862 11248999999999999999999999955 23444555
Q ss_pred ccccccccc-hHHHHHHHHHHH-----hccC-CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEE
Q 001150 971 SITSKWFGE-GEKYVKAVFSLA-----SKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1043 (1138)
Q Consensus 971 eL~s~~iG~-~E~~I~~lF~~A-----~k~~-PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VL 1043 (1138)
+..+..++. .-+...++.... +-.+ +.||+|||.|.|. .. ....|...|+.. ...+.
T Consensus 98 derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sd-------aq~aLrr~mE~~----s~~tr 161 (346)
T KOG0989|consen 98 DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SD-------AQAALRRTMEDF----SRTTR 161 (346)
T ss_pred ccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh-----HH-------HHHHHHHHHhcc----ccceE
Confidence 544433221 111111111111 1112 3799999999883 22 233344444442 35688
Q ss_pred EEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCcH
Q 001150 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~teGySg 1107 (1138)
+|..||..+.|...+.+|+ ..+.|.....+.....|+.+..++++.-+ ..++.|+..++|--.
T Consensus 162 FiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred EEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Confidence 8889999999999999999 67889888888999999999999988743 447888888877443
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=3.4e-11 Score=136.62 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=108.1
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~ 976 (1138)
..+|+++.|.+.+++.|+..+.. .+.++.+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 35899999999999999988752 122345677999999999999999999999999998876 21
Q ss_pred ccchHHHHHHHHHHHh-ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc
Q 001150 977 FGEGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1138)
Q Consensus 977 iG~~E~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld 1055 (1138)
.......+........ ...+.||||||+|.+.. ..... .|...++.. ...+.+|+|||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~---~L~~~le~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQR---HLRSFMEAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHH---HHHHHHHhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 12578999999997721 11112 222223332 24567888999999999
Q ss_pred HHHHhcCCceEEecCCCHHHHHHHHHHHH
Q 001150 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVIL 1084 (1138)
Q Consensus 1056 ~aLlrRFd~~I~v~lPd~eeR~eIL~~ll 1084 (1138)
+++++|| ..+.++.|+.+++..+++.++
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 9999999 688999999999987776543
No 138
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.2e-11 Score=148.67 Aligned_cols=191 Identities=21% Similarity=0.305 Sum_probs=134.8
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEE---ec----
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 969 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~I---d~---- 969 (1138)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 35899999999999999998863 22335789999999999999999999986531100 00
Q ss_pred ------cccc--cccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc
Q 001150 970 ------SSIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1037 (1138)
Q Consensus 970 ------seL~--s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~ 1037 (1138)
.++. ..........++.+.+.+... ...|++|||+|.|- ....+.|+..|+..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP--- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP--- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC---
Confidence 0000 000001233466776666543 45799999999872 12455666666653
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCcHHHHHHHHHH
Q 001150 1038 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSDLKNLCVT 1116 (1138)
Q Consensus 1038 ~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~teGySgaDL~~L~~~ 1116 (1138)
+..+++|.+|+.++.|.+.+++|+ .++.|..++.++..++++..+.+.++.. +..+..||..+.| +.+++..+++.
T Consensus 146 -P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLek 222 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQ 222 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 356777888888899999999999 6899999999999999999988877653 3347778888887 44566666555
Q ss_pred HH
Q 001150 1117 AA 1118 (1138)
Q Consensus 1117 Aa 1118 (1138)
++
T Consensus 223 l~ 224 (725)
T PRK07133 223 VS 224 (725)
T ss_pred HH
Confidence 43
No 139
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.9e-11 Score=149.77 Aligned_cols=183 Identities=20% Similarity=0.263 Sum_probs=133.2
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|+|++|++++++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5799999999999999998852 2334568999999999999999999998542
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
++.++...- ..-..++.+...+... ...|+||||+|.|- ....+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHH
Confidence 333333221 1123455655555332 34699999999872 223455666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.|+.. ...+++|.+|+.++.|.+.+++|+ .++.|..++.++....+..++.+.++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 356788888888899999999999 789999999999999999999888765 34557788888887 445
Q ss_pred HHHHHHHHH
Q 001150 1109 DLKNLCVTA 1117 (1138)
Q Consensus 1109 DL~~L~~~A 1117 (1138)
++.++++.+
T Consensus 216 ~al~~Ldql 224 (576)
T PRK14965 216 DSLSTLDQV 224 (576)
T ss_pred HHHHHHHHH
Confidence 555555544
No 140
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.34 E-value=3.2e-12 Score=112.84 Aligned_cols=67 Identities=30% Similarity=0.519 Sum_probs=59.8
Q ss_pred EEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEEEe
Q 001150 147 FTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVFG 216 (1138)
Q Consensus 147 ~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~f~ 216 (1138)
|+|||+..||+.|.+..||..||.|..... ..+||+|+ |.|||||||.++.++..+.|++||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999987654 35899998 68999999999999999999999999884
No 141
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.34 E-value=6e-11 Score=127.73 Aligned_cols=187 Identities=20% Similarity=0.255 Sum_probs=119.5
Q ss_pred ccccccc--chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc
Q 001150 898 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1138)
Q Consensus 898 vsfdDI~--Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL 972 (1138)
.+|+++. +.+...+.|++++.. .....++|+||+|||||++|+++++.+ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4566664 355566777766531 223579999999999999999999887 578888988876
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.... ..++.... ...+|||||+|.+.... .....+..+++.+ .. ....+|+.++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~----~~-----~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRV----RE-----AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHH----HH-----cCCeEEEECCCChH
Confidence 5321 22232222 34699999999873210 0122222222221 11 12234444333443
Q ss_pred CC--c-HHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1053 DL--D-EAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1053 ~L--d-~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
.+ . +.+.+||. ..+.++.|+.+++..+++.++.+.++. ++.-++.|+.... .+.+++.++++.+...+
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRAS 209 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 33 2 78888874 678899999999999999988766554 3444777888654 47889999988766544
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.7e-11 Score=142.33 Aligned_cols=184 Identities=20% Similarity=0.265 Sum_probs=129.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|+|++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 6899999999999999988852 2333679999999999999999999998442
Q ss_pred -----------eEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 964 -----------fi~Id~seL~s~~iG~~E~~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
++.++.... .| -..++.+.+.+ ....+.||||||+|.+. ....+.|+
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LL 142 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLL 142 (451)
T ss_pred HHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHH
Confidence 333332211 00 12233322222 23457899999999872 22345666
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..++.. ...+++|++|+.+..|.+.+++|+ ..+.|..++.++..++++..+.+.++. ++..+..|+..+.| +.
T Consensus 143 k~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dl 216 (451)
T PRK06305 143 KTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SL 216 (451)
T ss_pred HHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 246677777788889999999999 689999999999999999998887764 34457788888876 44
Q ss_pred HHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAA 1118 (1138)
Q Consensus 1108 aDL~~L~~~Aa 1118 (1138)
+.+.++++..+
T Consensus 217 r~a~~~Lekl~ 227 (451)
T PRK06305 217 RDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.5e-11 Score=143.54 Aligned_cols=186 Identities=22% Similarity=0.304 Sum_probs=130.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|++++|++.+.+.|+..+.. .+..+.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 35799999999999999998853 2233568999999999999999999998641
Q ss_pred -----------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 964 -----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
++.++.+. ...-..++.+.+.+... .+.|++|||+|.|. ...++.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 12222111 01122345555444432 45799999999772 22345566
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~teGySg 1107 (1138)
..++.. +..+++|.+|+.++.+.+++.+|+ .++.|..++.++...+++.++...++.. +..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666553 234556666677788888999999 5899999999999999999999887653 3446778888776 45
Q ss_pred HHHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAAH 1119 (1138)
Q Consensus 1108 aDL~~L~~~Aa~ 1119 (1138)
+++.++++.++.
T Consensus 215 r~al~~Ldkl~~ 226 (486)
T PRK14953 215 RDAASLLDQAST 226 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=5e-11 Score=145.25 Aligned_cols=184 Identities=21% Similarity=0.222 Sum_probs=132.3
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|+|++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 35799999999999999998862 2233569999999999999999999998642
Q ss_pred -----------eEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 964 -----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
++.++... ...-..++++.+.+. .....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222211 011223444443332 2356799999999882 23455666
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..++.. +..+++|++|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. .+..+..|+..+.| +.
T Consensus 141 K~LEep----p~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEEP----PPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred HhhccC----CCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 356777777887888999999999 578999999999999999998887765 34457778888877 55
Q ss_pred HHHHHHHHHH
Q 001150 1108 SDLKNLCVTA 1117 (1138)
Q Consensus 1108 aDL~~L~~~A 1117 (1138)
+++.++++.+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 6676766544
No 145
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=3.3e-11 Score=150.17 Aligned_cols=181 Identities=20% Similarity=0.346 Sum_probs=124.3
Q ss_pred cccccccchHHHHH---HHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 898 VTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk~---~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+|+|++|.+.+.. .|++.+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 57899999998874 45555531 122479999999999999999999999999988886531
Q ss_pred ccccchHHHHHHHHHHHh-----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC
Q 001150 975 KWFGEGEKYVKAVFSLAS-----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~-----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN 1049 (1138)
+ ...++.++..+. .....||||||||.|- .. ..+.|+..++. ..+++|++|.
T Consensus 89 ---~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~-------qQdaLL~~lE~------g~IiLI~aTT 145 (725)
T PRK13341 89 ---G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KA-------QQDALLPWVEN------GTITLIGATT 145 (725)
T ss_pred ---h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HH-------HHHHHHHHhcC------ceEEEEEecC
Confidence 1 112233333321 1245799999999872 11 12233333322 3566666553
Q ss_pred --CCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh-------CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1050 --RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1050 --~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k-------~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
....+++++++|+ .++.|+.++.+++..+++.++.. .++. ++..++.|+....| ..+.+.++++.|+.
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3357889999997 67999999999999999998872 2232 33447888888866 56778888887664
No 146
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=7.8e-11 Score=136.79 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=131.5
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCce----------EE
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------IN 966 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~f----------i~ 966 (1138)
..+|++++|++.+.+.|...+.. .+.++.+|||||||+|||++|+++|+.+..+. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 35799999999999999988852 12336899999999999999999999985421 11
Q ss_pred EeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCE
Q 001150 967 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 1042 (1138)
Q Consensus 967 Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~V 1042 (1138)
+.... ........++.+++.+... .+.||+|||+|.+. ...++.|+..++.. ....
T Consensus 80 ~~l~~----~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~----~~~~ 139 (367)
T PRK14970 80 FELDA----ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEP----PAHA 139 (367)
T ss_pred EEecc----ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCC----CCce
Confidence 11110 1111234566677665432 35799999999773 12244555555442 2345
Q ss_pred EEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1043 LVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1043 LVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
++|.+++.+..+.+++.+|+ .++.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++..+
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66667777888999999998 678999999999999999999888764 44557788887765 5556666666554
No 147
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=1.1e-10 Score=134.75 Aligned_cols=202 Identities=18% Similarity=0.228 Sum_probs=129.1
Q ss_pred ccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CceEEEeccc
Q 001150 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 971 (1138)
Q Consensus 901 dDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---------~~fi~Id~se 971 (1138)
+++.|.++..+.|...+...+. + ..+..++|+||||||||++++++++.+. +.++.+++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4678899888888887753211 1 1225799999999999999999998762 6788888755
Q ss_pred ccc----------ccc--c--------chHHHHHHHHHHHh-ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 001150 972 ITS----------KWF--G--------EGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1138)
Q Consensus 972 L~s----------~~i--G--------~~E~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~ 1030 (1138)
..+ .+. + ........++.... ...+.||+|||+|.+.+.. ..++..|+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 321 110 1 01223344555443 2356899999999996221 1233344333
Q ss_pred hcCCCccCCCCEEEEEecCCCC---CCcHHHHhcCC-ceEEecCCCHHHHHHHHHHHHhhC---CCCCcccHHHHH---H
Q 001150 1031 WDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIA---N 1100 (1138)
Q Consensus 1031 Ldgl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd-~~I~v~lPd~eeR~eIL~~ll~k~---~l~~dvdl~~LA---~ 1100 (1138)
++. ....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+... ....+..+..++ .
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236789999998875 57888888985 679999999999999999988631 112222233444 3
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1101 MTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1101 ~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
.+.|.. +.+.++|..|+..+..
T Consensus 235 ~~~Gd~-R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGDA-RKAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCCH-HHHHHHHHHHHHHHHH
Confidence 445654 4556678888776654
No 148
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=7.8e-11 Score=141.96 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=134.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 962 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-------------- 962 (1138)
..+|++++|++.+++.|+..+.. .+-++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 35899999999999999998852 123356799999999999999999999832
Q ss_pred ----------ceEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 963 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 963 ----------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
.++.++...- ..-..++.+...+.. ....|++|||+|.|- ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1233322110 012345555444322 234699999999882 23345556
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySg 1107 (1138)
..+... +..+.+|.+|+.+..|.+.+++|+ .+++|..++.++....++.++.++++. .+..+..|+..+.| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 666553 245667777777899999999998 789999999999999999999888765 34557788888877 66
Q ss_pred HHHHHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1108 aDL~~L~~~Aa~~a 1121 (1138)
+++.++++.|+..+
T Consensus 213 R~alnlLdqai~~~ 226 (535)
T PRK08451 213 RDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHhc
Confidence 77888887766543
No 149
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.30 E-value=1.6e-10 Score=125.32 Aligned_cols=182 Identities=20% Similarity=0.227 Sum_probs=116.7
Q ss_pred Cccccccc--chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 897 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 897 ~vsfdDI~--Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
..+|+++. +.+.+...++.+... ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 45677755 335555556554431 1123579999999999999999999986 77888888766
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
+... + .......+|+|||+|.+- ......+..+++.+ .. ....+++++++..+
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~-----~~~~~~L~~~~~~~-------~~-~~~~~vl~~~~~~~ 133 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLD-----DAQQIALFNLFNRV-------RA-HGQGALLVAGPAAP 133 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcC-----chHHHHHHHHHHHH-------HH-cCCcEEEEeCCCCH
Confidence 4321 1 112246799999999762 11222222222222 11 11223444444333
Q ss_pred --CCCcHHHHhcC--CceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1052 --FDLDEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1052 --~~Ld~aLlrRF--d~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
..+.+.+.+|| ...+.++.|+.+++..+++.+....++. ++.-++.|+....| +.+++.++++....
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~ 205 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDR 205 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 24568888888 4688999999999999999888776655 33457788886665 77788888776443
No 150
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.29 E-value=2e-10 Score=125.80 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=116.5
Q ss_pred Cccccccc--chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 897 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 897 ~vsfdDI~--Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
..+|+++. ....+...+...... .....++|+||+|+|||+|++++++++ +..+..+....
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 35677765 334455555554421 112479999999999999999999887 34455555443
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
... ....+...... ..+|+||||+.+.+.. .....+..+++.++ +. +...+++++++.|
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---~~~~~lf~l~n~~~---e~-----g~~~li~ts~~~p 142 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---LWEMAIFDLYNRIL---ES-----GRTRLLITGDRPP 142 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---HHHHHHHHHHHHHH---Hc-----CCCeEEEeCCCCh
Confidence 211 11122222222 3689999999884321 11223333333332 11 1223555555555
Q ss_pred CC---CcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1052 FD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1052 ~~---Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
.. +.+.+++|+. .++.+..|+.+++.++++......++. ++.-++.|++..+| +.+.+.++++...
T Consensus 143 ~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 143 RQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 54 5799999995 678899999999999999877766655 44557889998887 5667777777643
No 151
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.8e-11 Score=146.02 Aligned_cols=192 Identities=23% Similarity=0.291 Sum_probs=143.5
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCce-------EEE-ec
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI-SM 969 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~f-------i~I-d~ 969 (1138)
.+|+|+.|++.+...|...+.. .+-.+..||.||.|+|||++||.+|+.+++.= ..+ .|
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 5799999999999999998874 23336799999999999999999999996542 000 00
Q ss_pred ccccc-ccc---------cchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC
Q 001150 970 SSITS-KWF---------GEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1138)
Q Consensus 970 seL~s-~~i---------G~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~ 1035 (1138)
-.+.. .++ ...-..++.+.+.+.- ..+.|.+|||++.|- ...+|.||..+..
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE-- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE-- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc--
Confidence 11100 000 1122345666655543 356799999999772 4566777766655
Q ss_pred ccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCcHHHHHHHH
Q 001150 1036 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1036 ~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~teGySgaDL~~L~ 1114 (1138)
++.+|.+|.+|..+..++..+++|+ .++.|...+.++....+..++.++++..+ ..+..+|+..+| +.+|...|+
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 4578999999999999999999999 78999999999999999999999988744 447778888887 667888887
Q ss_pred HHHHHH
Q 001150 1115 VTAAHR 1120 (1138)
Q Consensus 1115 ~~Aa~~ 1120 (1138)
..|...
T Consensus 222 Dq~i~~ 227 (515)
T COG2812 222 DQAIAF 227 (515)
T ss_pred HHHHHc
Confidence 777654
No 152
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1e-10 Score=143.28 Aligned_cols=190 Identities=21% Similarity=0.182 Sum_probs=133.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEe---------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS--------- 968 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id--------- 968 (1138)
.+|+|++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 5799999999999999998752 233468999999999999999999999965432111
Q ss_pred ----c--------cccccc--cccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 001150 969 ----M--------SSITSK--WFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1138)
Q Consensus 969 ----~--------seL~s~--~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~ 1030 (1138)
| .+++.. -....-..++.+.+.+... ...||||||+|.|- ....+.|+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKt 155 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKT 155 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHH
Confidence 0 011000 0001123466666666443 35799999999882 1234556655
Q ss_pred hcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCcHHH
Q 001150 1031 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSD 1109 (1138)
Q Consensus 1031 Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~teGySgaD 1109 (1138)
|+.. ...+.+|.+|+.++.+.+.+++|+ .++.|..++.++...+++..+.++++.-+ ..+..|+..+.| +.++
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 5553 245677777777778888999999 78999999999999999999988876533 456777888876 5566
Q ss_pred HHHHHHHHH
Q 001150 1110 LKNLCVTAA 1118 (1138)
Q Consensus 1110 L~~L~~~Aa 1118 (1138)
+.++++.++
T Consensus 230 al~~Ldkli 238 (598)
T PRK09111 230 GLSLLDQAI 238 (598)
T ss_pred HHHHHHHHH
Confidence 777666553
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=9.8e-11 Score=144.16 Aligned_cols=183 Identities=21% Similarity=0.262 Sum_probs=132.0
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|++++|++.+++.|...+.. .+-..++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 36799999999999999998863 1122579999999999999999999999653
Q ss_pred -------------eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHH
Q 001150 964 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1026 (1138)
Q Consensus 964 -------------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~ 1026 (1138)
++.++.. ....-..++.+...+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 2222211 112234567777666533 35799999999882 234456
Q ss_pred HHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCC
Q 001150 1027 FMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGY 1105 (1138)
Q Consensus 1027 LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGy 1105 (1138)
|+..++.. ...+++|++|+.+..+.+.+++|+ ..+.|..++.++....+..++.+.++. .+..+..|+..+.|.
T Consensus 141 LLK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEEP----PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhcC----CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 66666643 355777777888888999999999 788999999999888888888876654 234477888888874
Q ss_pred cHHHHHHHHHH
Q 001150 1106 SGSDLKNLCVT 1116 (1138)
Q Consensus 1106 SgaDL~~L~~~ 1116 (1138)
- +++.++++.
T Consensus 216 l-r~A~~lLek 225 (620)
T PRK14948 216 L-RDAESLLDQ 225 (620)
T ss_pred H-HHHHHHHHH
Confidence 4 455555543
No 154
>PRK06893 DNA replication initiation factor; Validated
Probab=99.28 E-value=5.4e-11 Score=129.78 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=103.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
..++||||||+|||+|++++|+++ +.....+.+.... .....++.... ...+|+||||+.+.+...+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~ 109 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEEW 109 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCChHH
Confidence 368999999999999999999987 4455555543211 11112333222 4579999999988543211
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc---HHHHhcC--CceEEecCCCHHHHHHHHHHHHhhCC
Q 001150 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---EAVIRRL--PRRLMVNLPDAPNRAKILQVILAKED 1088 (1138)
Q Consensus 1014 ~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld---~aLlrRF--d~~I~v~lPd~eeR~eIL~~ll~k~~ 1088 (1138)
...+..+++.+ .. .+..++|++++..|..++ +.+.+|+ +.++.++.|+.++|.+|++..+...+
T Consensus 110 ---~~~l~~l~n~~-------~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 110 ---ELAIFDLFNRI-------KE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ---HHHHHHHHHHH-------HH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11222222222 11 123455565666666554 7899976 46888999999999999999888766
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1089 l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
+. ++.-+..|++...| +.+.|..+++...
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 65 44457888888886 5556777666543
No 155
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=8e-11 Score=138.39 Aligned_cols=184 Identities=18% Similarity=0.209 Sum_probs=127.3
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|++++|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 5799999999999999887762 2233569999999999999999999999662
Q ss_pred ------------------eEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHH
Q 001150 964 ------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMR 1021 (1138)
Q Consensus 964 ------------------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~ 1021 (1138)
|+.++.... ..-..++.+.+.+.. ....||||||+|.+- .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------I 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------H
Confidence 122221110 112344554444422 234699999999882 1
Q ss_pred HHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHH
Q 001150 1022 KMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIAN 1100 (1138)
Q Consensus 1022 ~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~ 1100 (1138)
...+.|+..++.. ...+++|.+|+.+..+.+.+.+|+ .++.|..++.++..++++..+...++. .+..+..|+.
T Consensus 142 ~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1234455555543 234566666677788888999998 689999999999999999998877654 4455788888
Q ss_pred HcCCCcHHHHHHHHHHHH
Q 001150 1101 MTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1101 ~teGySgaDL~~L~~~Aa 1118 (1138)
.+.| +.+.+.+.++.+.
T Consensus 217 ~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8877 4455666666543
No 156
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2.2e-10 Score=140.65 Aligned_cols=184 Identities=19% Similarity=0.233 Sum_probs=128.1
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------------- 963 (1138)
..+|++++|++.+++.|+..+.. .+-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 35799999999999999987752 1223569999999999999999999999762
Q ss_pred -------------------eEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHH
Q 001150 964 -------------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAM 1020 (1138)
Q Consensus 964 -------------------fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al 1020 (1138)
|+.++.... ..-..++.+.+.+. .....|++|||+|.|-
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------
Confidence 111211100 11233445444442 2245799999999882
Q ss_pred HHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHH
Q 001150 1021 RKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIA 1099 (1138)
Q Consensus 1021 ~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA 1099 (1138)
....+.|+..++.. ...+++|.+|+.+..|-+.+++|+ .++.|..++.++....++.++.+.++. ++..++.|+
T Consensus 141 ~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 141 TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12245566666553 234566666677788889999999 789999999999999999988887754 445578888
Q ss_pred HHcCCCcHHHHHHHHHHH
Q 001150 1100 NMTDGYSGSDLKNLCVTA 1117 (1138)
Q Consensus 1100 ~~teGySgaDL~~L~~~A 1117 (1138)
..+.| +.+++.+.++..
T Consensus 216 ~~s~G-dlr~al~eLeKL 232 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQV 232 (620)
T ss_pred HHhCC-CHHHHHHHHHHH
Confidence 88887 444455544433
No 157
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.24 E-value=4e-10 Score=127.29 Aligned_cols=184 Identities=23% Similarity=0.289 Sum_probs=124.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CceEEEecccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-----~~fi~Id~seL 972 (1138)
.+|+|+.|.+.+.+.|..++.. + . ..++||+||||+|||++++++++++. .+++.++.++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~---~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------K---N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------C---C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5799999999999999988752 1 1 13689999999999999999999972 34555544332
Q ss_pred ccccccchHHHHHH-HHHHHhc-----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEE
Q 001150 973 TSKWFGEGEKYVKA-VFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~-lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIa 1046 (1138)
.. ...+.. +...+.. ..+.+|+|||+|.+.. ...+.|+..++... ....+|.
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~~~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------DAQQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------HHHHHHHHHHhcCC----CCCeEEE
Confidence 11 111222 2222221 2356999999998831 11223444444332 2345666
Q ss_pred ecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
++|.+..+.+.+.+|+ .++.|..++.++...+++.++.+.++. .+..+..|+..+.|.. +.+.+.++.++.
T Consensus 138 ~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~-r~~~~~l~~~~~ 209 (319)
T PRK00440 138 SCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDM-RKAINALQAAAA 209 (319)
T ss_pred EeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 7777788888899998 578999999999999999999887764 4456788888887744 445555555443
No 158
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=4.6e-11 Score=142.05 Aligned_cols=167 Identities=17% Similarity=0.303 Sum_probs=109.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchH-HHHHHHHHHHhccCCeEEEEcCCcccccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E-~~I~~lF~~A~k~~PsIIfIDEID~L~~~ 1010 (1138)
++++||||+|+|||+|++++|+++ +..++++++.++...+..... ..+. -|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999987 467888888776554332211 1122 233334446889999999988543
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC---CcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHh
Q 001150 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1085 (1138)
Q Consensus 1011 r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~ 1085 (1138)
.. .+..+..+++.+. . ....+||++...|.. +.+.+++||. .++.+..|+.+.|..|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~-------~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELH-------D--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHH-------H--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 11 1112222233322 1 123455555566654 4567888984 4678999999999999999988
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001150 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1138)
Q Consensus 1086 k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~A 1117 (1138)
..++. ++..+..||....| +.++|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 76554 44447888888776 556666666543
No 159
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=4.4e-10 Score=131.26 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=130.5
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccc
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSIT 973 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~ 973 (1138)
..+.+.+-++..+.|...+...+. + .. +..++|+||||+|||++++.+++++ ++.++.+++....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~-------~--~~-~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR-------G--SR-PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC-------C--CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 345677888888888777753211 1 12 2569999999999999999999887 5788899886432
Q ss_pred c----------cccc--------chHHHHHHHHHHHhc-cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001150 974 S----------KWFG--------EGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1034 (1138)
Q Consensus 974 s----------~~iG--------~~E~~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl 1034 (1138)
+ ...+ .....+..++....+ ..+.||+|||+|.+.... . ..++..|+..+...
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~ 169 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEY 169 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhcc
Confidence 1 1111 112233334443332 356899999999886211 1 12344454444443
Q ss_pred CccCCCCEEEEEecCCC---CCCcHHHHhcCC-ceEEecCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHcCCCc-
Q 001150 1035 RTKDTERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMTDGYS- 1106 (1138)
Q Consensus 1035 ~~~~~~~VLVIaTTN~p---~~Ld~aLlrRFd-~~I~v~lPd~eeR~eIL~~ll~k~---~l~~dvdl~~LA~~teGyS- 1106 (1138)
. ..++.+|+++|.. +.+++.+.+||. ..+.|+.++.++..+|++..+... ....+..++.+++.+.+.+
T Consensus 170 ~---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 170 P---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred C---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 2 2378888888865 357788888874 578999999999999999987642 1223444677777774322
Q ss_pred -HHHHHHHHHHHHHHHHH
Q 001150 1107 -GSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1107 -gaDL~~L~~~Aa~~ai~ 1123 (1138)
.+.+.++|..|+..+..
T Consensus 247 d~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 247 DARVAIDLLRRAGLIAER 264 (394)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 24455677776665543
No 160
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.2e-10 Score=139.41 Aligned_cols=184 Identities=21% Similarity=0.274 Sum_probs=127.7
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCce------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 964 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~f------------ 964 (1138)
..+|++++|++.+++.|+..+.. .+..+.+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 35899999999999999888762 12235689999999999999999999985422
Q ss_pred -------------EEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHH
Q 001150 965 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1138)
Q Consensus 965 -------------i~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~L 1027 (1138)
+.++... ...-..++.+.+.+.. ....||||||+|.|- ...++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222111 0112234444433332 245799999999872 1234556
Q ss_pred HHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCc
Q 001150 1028 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1106 (1138)
Q Consensus 1028 L~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGyS 1106 (1138)
+..++... ..++||.+++..+.+.+.+++|+ .++.|..++..+...+++.++.+.++. .+..+..|+..+.| +
T Consensus 141 Lk~LEepp----~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEPP----PHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcCC----CCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 66665532 35666667777788888999998 678999999999999999998887764 33447788888876 5
Q ss_pred HHHHHHHHHHH
Q 001150 1107 GSDLKNLCVTA 1117 (1138)
Q Consensus 1107 gaDL~~L~~~A 1117 (1138)
.+++.++++..
T Consensus 215 lr~al~~LekL 225 (585)
T PRK14950 215 MRDAENLLQQL 225 (585)
T ss_pred HHHHHHHHHHH
Confidence 56666665543
No 161
>PRK08727 hypothetical protein; Validated
Probab=99.21 E-value=1.1e-09 Score=119.88 Aligned_cols=158 Identities=23% Similarity=0.290 Sum_probs=102.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
..++|+||+|+|||+|+.++++++ +..++.+++.++.. .+..++.... ...+|+||||+.+.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 459999999999999999998876 66666776544322 2233443332 457999999998853321
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC-CCCCC---cHHHHhcC--CceEEecCCCHHHHHHHHHHHHhhC
Q 001150 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN-RPFDL---DEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKE 1087 (1138)
Q Consensus 1014 ~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN-~p~~L---d~aLlrRF--d~~I~v~lPd~eeR~eIL~~ll~k~ 1087 (1138)
....+-.+++.+. . ...-+|.|+| .|..+ .+.+++|| ..++.++.|+.+++.+|++......
T Consensus 111 --~~~~lf~l~n~~~----~------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 --DEVALFDFHNRAR----A------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred --HHHHHHHHHHHHH----H------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 1122222222221 1 1233444554 55544 68999997 5678899999999999999987766
Q ss_pred CCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1088 DLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1088 ~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
++. ++..+..|+..+.| ..+.+.++++...
T Consensus 179 ~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred CCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 655 44457888888876 3344545555443
No 162
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=5.9e-10 Score=137.34 Aligned_cols=184 Identities=20% Similarity=0.278 Sum_probs=133.1
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~--------------- 962 (1138)
.+|++++|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 6899999999999999988862 223356999999999999999999998853
Q ss_pred ----------ceEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 963 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 963 ----------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
+++.+++... .....++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHH
Confidence 3333433211 1123455555555433 35699999999882 12345566
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCcH
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~teGySg 1107 (1138)
..|+.. ...+++|.+|+.+..|-+.+++|+ .++.|..++.++...+++.++.++++..+ ..+..|+..+.| +.
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 245667777777788999999999 78999999999999999999988887643 447888888876 55
Q ss_pred HHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAA 1118 (1138)
Q Consensus 1108 aDL~~L~~~Aa 1118 (1138)
+++.++++..+
T Consensus 217 r~al~~Lekl~ 227 (614)
T PRK14971 217 RDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHHH
Confidence 56666665543
No 163
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.21 E-value=3.8e-10 Score=122.47 Aligned_cols=168 Identities=20% Similarity=0.358 Sum_probs=105.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchHH-HHHHHHHHHhccCCeEEEEcCCcccccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E~-~I~~lF~~A~k~~PsIIfIDEID~L~~~ 1010 (1138)
..++||||+|+|||+|.+|+++++ +..++++++.++...+...... .+.. |....+ ...+|+||+|+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc
Confidence 469999999999999999999886 6778899887765543322211 1222 322223 5689999999988422
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC---CCcHHHHhcCCc--eEEecCCCHHHHHHHHHHHHh
Q 001150 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 1085 (1138)
Q Consensus 1011 r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd~--~I~v~lPd~eeR~eIL~~ll~ 1085 (1138)
...++.+-.+++.+. . ..+.+||++...|. .+++.+.+||.. ++.+..|+.+.|.+|++..+.
T Consensus 113 ---~~~q~~lf~l~n~~~-------~--~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 ---QRTQEELFHLFNRLI-------E--SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp ---HHHHHHHHHHHHHHH-------H--TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHH-------h--hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 111223333333332 1 23455555555554 456889999854 778899999999999999999
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1086 k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
..++. ++.-++.|+....+ +.++|..++..-..
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 88876 33446777777764 66778777766443
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=1.7e-10 Score=140.00 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=112.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r 1011 (1138)
+.++|||++|+|||+|+.+|++++ +..++++++.++...+...........|...++ ...||+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999987 578889998887665543322222223443333 46899999999885432
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC-C---CCCcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHh
Q 001150 1012 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-P---FDLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1085 (1138)
Q Consensus 1012 ~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~-p---~~Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~ 1085 (1138)
. ..+.+-.+++.+. . ..+-+|| |+|. + ..+++.+++||. .++.+..|+.+.|..||+..+.
T Consensus 394 ~---tqeeLF~l~N~l~-------e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S---TQEEFFHTFNTLH-------N--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H---HHHHHHHHHHHHH-------h--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1222333444432 1 1223444 5554 3 357889999994 5567889999999999999998
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001150 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1138)
Q Consensus 1086 k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~A 1117 (1138)
..++. ++.-++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 87766 34447888887775 556677666543
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.8e-10 Score=137.12 Aligned_cols=167 Identities=16% Similarity=0.262 Sum_probs=110.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
++++||||+|+|||+|++++++++ +..++.+++..+...+.......-...|....+ ...||+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 579999999999999999999987 688888887766443322211111123444433 56799999999875332
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC---CCcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCC
Q 001150 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 1088 (1138)
Q Consensus 1014 ~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~ 1088 (1138)
...+.+..+++.+.. ..+.+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...+
T Consensus 219 -~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 112233333443321 12345554444453 56789999995 6788889999999999999998877
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001150 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1138)
Q Consensus 1089 l~-~dvdl~~LA~~teGySgaDL~~L~~~A 1117 (1138)
+. ++.-++.|+....+ +.++|.+++...
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 65 34446668887775 445666655554
No 166
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.18 E-value=2e-10 Score=127.91 Aligned_cols=133 Identities=22% Similarity=0.295 Sum_probs=90.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc------cccccccchHHH-H--------------------HHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-V--------------------KAVFS 989 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~se------L~s~~iG~~E~~-I--------------------~~lF~ 989 (1138)
.++||+||||||||++|+++|..+|.+|+.+++.. +++.+.+..... . +.++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998753 333332221111 0 11222
Q ss_pred HHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------c-----cCCCCEEEEEecCCC-----C
Q 001150 990 LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------T-----KDTERILVLAATNRP-----F 1052 (1138)
Q Consensus 990 ~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~-----~~~~~VLVIaTTN~p-----~ 1052 (1138)
|.+ ...+|+||||+++ .+ .+.+.|+..++... . ....++.||+|+|.. .
T Consensus 102 -A~~-~g~~lllDEi~r~-----~~-------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 -AVR-EGFTLVYDEFTRS-----KP-------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred -HHH-cCCEEEEcchhhC-----CH-------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 222 3479999999976 22 22333333332211 0 012467899999975 3
Q ss_pred CCcHHHHhcCCceEEecCCCHHHHHHHHHHHH
Q 001150 1053 DLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1084 (1138)
Q Consensus 1053 ~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll 1084 (1138)
.+++++++|| ..+.++.|+.++..+|++...
T Consensus 168 ~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 6789999999 789999999999999998865
No 167
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.18 E-value=3.5e-10 Score=138.95 Aligned_cols=197 Identities=18% Similarity=0.214 Sum_probs=126.3
Q ss_pred ccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEecc
Q 001150 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 970 (1138)
Q Consensus 901 dDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id~s 970 (1138)
+.|.+.++..+.|..++...+. + ..|...++|+|+||||||++++.++.++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4678888888888888764332 1 1232345799999999999999998776 2667899985
Q ss_pred ccccc----------ccc-------chHHHHHHHHHHHhc--cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHh
Q 001150 971 SITSK----------WFG-------EGEKYVKAVFSLASK--IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031 (1138)
Q Consensus 971 eL~s~----------~iG-------~~E~~I~~lF~~A~k--~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~L 1031 (1138)
.+... +.+ .....+..+|..... ....||+|||||.|... .+ .++-.|+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~Q----DVLYnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQ----KVLFTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HH----HHHHHHHHHh
Confidence 43111 111 122345666665522 24579999999999632 11 2222222211
Q ss_pred cCCCccCCCCEEEEEecCC---CCCCcHHHHhcCCc-eEEecCCCHHHHHHHHHHHHhhC-CCCCcccHHHHHHHcCCCc
Q 001150 1032 DGLRTKDTERILVLAATNR---PFDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAKE-DLSPDVDFDAIANMTDGYS 1106 (1138)
Q Consensus 1032 dgl~~~~~~~VLVIaTTN~---p~~Ld~aLlrRFd~-~I~v~lPd~eeR~eIL~~ll~k~-~l~~dvdl~~LA~~teGyS 1106 (1138)
. ....+++|||++|. ++.|++.+.+||.. .+.|++++.+++.+||+..+... ++-.+..++.+|+.+...+
T Consensus 897 -~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S 972 (1164)
T PTZ00112 897 -T---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS 972 (1164)
T ss_pred -h---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC
Confidence 1 12467999999986 56777888898864 48889999999999999988753 2334444677777444222
Q ss_pred --HHHHHHHHHHHHH
Q 001150 1107 --GSDLKNLCVTAAH 1119 (1138)
Q Consensus 1107 --gaDL~~L~~~Aa~ 1119 (1138)
.+....+|..|+.
T Consensus 973 GDARKALDILRrAgE 987 (1164)
T PTZ00112 973 GDIRKALQICRKAFE 987 (1164)
T ss_pred CHHHHHHHHHHHHHh
Confidence 2333355565553
No 168
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.16 E-value=1.2e-10 Score=109.53 Aligned_cols=96 Identities=22% Similarity=0.371 Sum_probs=80.2
Q ss_pred hhhcccCC--CCcceeeeC-CeEEEcCCCCc-ceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCCC
Q 001150 128 CRLLSQSG--QNSNVPICA-SIFTVGSSRQC-NFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNT 203 (1138)
Q Consensus 128 grL~s~~~--~~~~~~i~~-~~~tvGr~~~c-d~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~~ 203 (1138)
+.|.++.. ..+.+.|.. ..|+|||+..| |+.|.+..+|..||.|.....+ ...++++.|.|||||||+++.++.
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~~vn~~~~~~~~ 79 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGTFVNGQRVSPGE 79 (102)
T ss_pred eEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCeEECCEECCCCC
Confidence 44555544 568889999 99999999999 9999999999999999976532 346888888899999999999999
Q ss_pred eeEccCCCEEEEeecCCeeEEEE
Q 001150 204 SCELRSGDEVVFGSLGNHAYIFQ 226 (1138)
Q Consensus 204 ~~~L~~gDeI~f~~~~~~ayif~ 226 (1138)
.+.|.+||.|.|+. +.+.|.|+
T Consensus 80 ~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 80 PVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred cEECCCCCEEEECC-eEEEEEEe
Confidence 99999999999987 34455554
No 169
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.16 E-value=4e-10 Score=109.92 Aligned_cols=121 Identities=41% Similarity=0.650 Sum_probs=80.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHH---HHHHHHHHhccCCeEEEEcCCcccccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~---I~~lF~~A~k~~PsIIfIDEID~L~~~ 1010 (1138)
.+++|+||||+|||+++++++..+ +.+++.+++.............. ....+..+....+.+|+|||++.+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-- 97 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-- 97 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh--
Confidence 579999999999999999999999 89999999877644332221111 1222344455578999999999761
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCCc--cCCCCEEEEEecCCCC--CCcHHHHhcCCceEEec
Q 001150 1011 RENPGEHEAMRKMKNEFMVNWDGLRT--KDTERILVLAATNRPF--DLDEAVIRRLPRRLMVN 1069 (1138)
Q Consensus 1011 r~~~~~~~al~~il~~LL~~Ldgl~~--~~~~~VLVIaTTN~p~--~Ld~aLlrRFd~~I~v~ 1069 (1138)
. ... ..++..+..... .....+.+|++++... .+++.+.+||+.++.++
T Consensus 98 ---~---~~~----~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ---R---GAQ----NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---H---HHH----HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 1 111 122222222211 1135688889988776 78889999998777664
No 170
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.14 E-value=1.9e-10 Score=130.73 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=96.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc--cccchH----------HHHHHHHHHHhccCCeEEEEcCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVIFVDEV 1004 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~--~iG~~E----------~~I~~lF~~A~k~~PsIIfIDEI 1004 (1138)
++|||.||||||||++|+++|..++.+++++++...+.. ++|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 479999999999999999999999999999988654333 444321 111223344444 4688999999
Q ss_pred cccccCCCCcchHHHHHHHHHH--HHHHhcCCCc-cCCCCEEEEEecCCCC------------CCcHHHHhcCCceEEec
Q 001150 1005 DSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRT-KDTERILVLAATNRPF------------DLDEAVIRRLPRRLMVN 1069 (1138)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~~--LL~~Ldgl~~-~~~~~VLVIaTTN~p~------------~Ld~aLlrRFd~~I~v~ 1069 (1138)
|.. .+.....++.++.. .+...+.... .....+.||||+|... .+++++++||-.++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 966 33333333333331 1111111111 1224789999999743 56899999997778899
Q ss_pred CCCHHHHHHHHHHHHh
Q 001150 1070 LPDAPNRAKILQVILA 1085 (1138)
Q Consensus 1070 lPd~eeR~eIL~~ll~ 1085 (1138)
.|+.++-.+|+.....
T Consensus 219 Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 219 YLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999987643
No 171
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=6.1e-10 Score=132.84 Aligned_cols=170 Identities=16% Similarity=0.251 Sum_probs=112.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchHH---HHHHHHHHHhccCCeEEEEcCCcccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E~---~I~~lF~~A~k~~PsIIfIDEID~L~ 1008 (1138)
++++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |....+ ...+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~~-~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEIC-QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHhc-cCCEEEEecccccc
Confidence 469999999999999999999966 4778888887776554332211 1211 222222 46799999999874
Q ss_pred cCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC-CCC---CCcHHHHhcCC--ceEEecCCCHHHHHHHHHH
Q 001150 1009 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN-RPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQV 1082 (1138)
Q Consensus 1009 ~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN-~p~---~Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ 1082 (1138)
++. ...+.+..+++.+. . ..+.+ |.|++ .|. .+++.+++||. .++.+..|+.++|.+|++.
T Consensus 220 ~k~---~~~e~lf~l~N~~~-------~--~~k~i-Iltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFI-------E--NDKQL-FFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCH---HHHHHHHHHHHHHH-------H--cCCcE-EEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 321 11233333333332 1 12234 44444 443 45789999994 5677889999999999999
Q ss_pred HHhhCCC---CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001150 1083 ILAKEDL---SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1083 ll~k~~l---~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai 1122 (1138)
.+...++ -++.-+..|+..+.| +.+.|..+|..+...+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 9987654 244457888888887 66788888887765443
No 172
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.13 E-value=2.1e-10 Score=120.06 Aligned_cols=115 Identities=27% Similarity=0.363 Sum_probs=77.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC----ceEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEcCCc
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVD 1005 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~----~fi~Id~seL~s~~iG~~E~~I~~lF~~A----~k~~PsIIfIDEID 1005 (1138)
+|...+||.||+|+|||.+|+++|..+.. +++.++|+++... +..+..+..++..+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 46678999999999999999999999996 9999999998651 11112222222111 11122499999999
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-------CCCCEEEEEecCCC
Q 001150 1006 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP 1051 (1138)
Q Consensus 1006 ~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p 1051 (1138)
..... ........-..+.+.||+.|++.... +-.++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 98654 22333344457788888888665443 23679999999863
No 173
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.13 E-value=2.7e-09 Score=131.76 Aligned_cols=200 Identities=20% Similarity=0.284 Sum_probs=118.8
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEE
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 966 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~ 966 (1138)
..+|++++|.+...+.+...+.. .. +.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 35788999999888877665532 11 2479999999999999999998766 357899
Q ss_pred Eeccccc-------cccccchHHH----HHHHHHH----------HhccCCeEEEEcCCcccccCCCCcchHHHHHHHHH
Q 001150 967 ISMSSIT-------SKWFGEGEKY----VKAVFSL----------ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN 1025 (1138)
Q Consensus 967 Id~seL~-------s~~iG~~E~~----I~~lF~~----------A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~ 1025 (1138)
+++..+. ..+++..... ....+.. ......++|||||++.| +...+..+..+++
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9987652 1122211100 0000100 11223579999999987 2222222222222
Q ss_pred HHHHHh-cC----------------CCccCCCCEEEEE-ecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC
Q 001150 1026 EFMVNW-DG----------------LRTKDTERILVLA-ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE 1087 (1138)
Q Consensus 1026 ~LL~~L-dg----------------l~~~~~~~VLVIa-TTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~ 1087 (1138)
.-...+ .+ +.......+++|+ ||+.+..+++++++||. .+.++.++.+++..|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 110000 00 0001123455555 55678899999999994 67889999999999999999876
Q ss_pred CCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1088 DLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1088 ~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
++. .+.-++.|+..+. .++...+++..+.
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~ 399 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVY 399 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHH
Confidence 543 2333455555543 3444445444443
No 174
>PRK05642 DNA replication initiation factor; Validated
Probab=99.13 E-value=8.7e-10 Score=120.82 Aligned_cols=160 Identities=21% Similarity=0.255 Sum_probs=106.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
+.++|+||+|+|||+|++++++++ +..++++++.++... ...+.+.... ..+|+||||+.+.+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 579999999999999999999876 677888887776542 1122222222 36899999997743321
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC---CCcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCC
Q 001150 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 1088 (1138)
Q Consensus 1014 ~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~ 1088 (1138)
..+.+-.+++.+ . +..+.+||+++..|. .+.+.+++||. .++.+..|+.+++.++++..+...+
T Consensus 115 --~~~~Lf~l~n~~-------~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 --WEEALFHLFNRL-------R--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --HHHHHHHHHHHH-------H--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 122233333332 1 124556666665553 33688999994 5677789999999999997666655
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1089 l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
+. ++.-++.|++...+ +.+.|..+++.-..
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~ 214 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERLDQ 214 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 54 44457888888876 66677777665543
No 175
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.12 E-value=3e-09 Score=114.58 Aligned_cols=192 Identities=21% Similarity=0.298 Sum_probs=139.8
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~ 973 (1138)
.+.+.+|.|.+.+++.|.+.... |.+ ..|.+++||+|..||||++|++|+.++. +..+|+|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 47899999999999998876643 333 3577899999999999999999999988 6778888877654
Q ss_pred cccccchHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
. +-.+++..+.. ..-|||+|++- + . .+... ...|-..++|.....+.+|+|.||+|+..
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e-~gd~~----yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS-F-----E-EGDDA----YKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC-C-----C-CCchH----HHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 3 34555555544 35699999884 1 1 11122 23455567887777789999999999865
Q ss_pred CCcH----------------------HHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc---ccHHHH--HHHcCCC
Q 001150 1053 DLDE----------------------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD---VDFDAI--ANMTDGY 1105 (1138)
Q Consensus 1053 ~Ld~----------------------aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d---vdl~~L--A~~teGy 1105 (1138)
.|.+ .+-.||+..+.|..++.++..+|++.++++.++..+ .+.+++ |..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4431 233499999999999999999999999999887742 222333 3334477
Q ss_pred cHHHHHHHHHHHH
Q 001150 1106 SGSDLKNLCVTAA 1118 (1138)
Q Consensus 1106 SgaDL~~L~~~Aa 1118 (1138)
||+-..+.++..+
T Consensus 266 SGR~A~QF~~~~~ 278 (287)
T COG2607 266 SGRVAWQFIRDLA 278 (287)
T ss_pred ccHhHHHHHHHHH
Confidence 8887777766544
No 176
>PHA02244 ATPase-like protein
Probab=99.12 E-value=9.2e-10 Score=126.60 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=81.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc---cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF---GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i---G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
.+|||+||||||||+||+++|..++.+|+.++...-..... .........-|..|.+ ...+||||||+.+-
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~----- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASI----- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCC-----
Confidence 36999999999999999999999999999987421111111 1111111112223322 46899999999762
Q ss_pred cchHHHHHHHHHH-HHHHhcCCCccCCCCEEEEEecCCC-----------CCCcHHHHhcCCceEEecCCCHHH
Q 001150 1014 PGEHEAMRKMKNE-FMVNWDGLRTKDTERILVLAATNRP-----------FDLDEAVIRRLPRRLMVNLPDAPN 1075 (1138)
Q Consensus 1014 ~~~~~al~~il~~-LL~~Ldgl~~~~~~~VLVIaTTN~p-----------~~Ld~aLlrRFd~~I~v~lPd~ee 1075 (1138)
+.....+..++.. ++..+.+ ......++.+|+|+|.+ ..+++++++|| ..|.++.|+..+
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~-~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADE-RVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred HHHHHHHHHHhccCeEEecCc-EEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHH
Confidence 2222222222211 1111111 11223678999999973 57899999999 689999998433
No 177
>PRK06620 hypothetical protein; Validated
Probab=99.12 E-value=1.3e-09 Score=117.97 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=97.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1016 (1138)
+.++||||||+|||+|++++++..+..++. .... ....+ + ...+|+||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccch--------
Confidence 579999999999999999999988753322 0000 00111 1 33799999999651
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC--CcHHHHhcCCc--eEEecCCCHHHHHHHHHHHHhhCCCC-C
Q 001150 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD--LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILAKEDLS-P 1091 (1138)
Q Consensus 1017 ~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~--Ld~aLlrRFd~--~I~v~lPd~eeR~eIL~~ll~k~~l~-~ 1091 (1138)
...+-.++|.+. +..+.+||+++..|.. + +++++|+.. ++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 123334444432 1245667776655543 5 889999943 68899999999999999998876654 4
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHH
Q 001150 1092 DVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1138)
Q Consensus 1092 dvdl~~LA~~teGySgaDL~~L~~~A 1117 (1138)
+.-++.|+....| +.+.+.++++..
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 4557888888876 556777777664
No 178
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=3.7e-09 Score=122.41 Aligned_cols=189 Identities=17% Similarity=0.133 Sum_probs=122.6
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-------eEEE---
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI--- 967 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------fi~I--- 967 (1138)
..+++++|++.+.+.|...+.. .+-++.+||+||+|+|||++|+++|+.+.+. ....
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4688999999999999998863 2233579999999999999999999998541 1100
Q ss_pred -ec-----------cccc--cccccc------h---HHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHH
Q 001150 968 -SM-----------SSIT--SKWFGE------G---EKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAM 1020 (1138)
Q Consensus 968 -d~-----------seL~--s~~iG~------~---E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al 1020 (1138)
.+ +++. ..-... . -..++.+..... .....||+|||+|.|-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 01 1110 000000 0 122333332222 2356799999999882
Q ss_pred HHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHH
Q 001150 1021 RKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIAN 1100 (1138)
Q Consensus 1021 ~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~ 1100 (1138)
....+.|+..++.. ..+.++|..|+.++.+.+.+++|+ ..+.|+.|+.++..++++......+ ..+..+..++.
T Consensus 155 ~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 22345566666553 245566666788888899999999 7999999999999999987543322 12333677788
Q ss_pred HcCCCcHHHHHHHHHHHH
Q 001150 1101 MTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1101 ~teGySgaDL~~L~~~Aa 1118 (1138)
.+.|..+ ...+++....
T Consensus 229 ~s~G~pr-~Al~ll~~~~ 245 (351)
T PRK09112 229 RSKGSVR-KALLLLNYGG 245 (351)
T ss_pred HcCCCHH-HHHHHHhcCc
Confidence 8877444 4445554433
No 179
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.2e-09 Score=119.20 Aligned_cols=189 Identities=23% Similarity=0.365 Sum_probs=121.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-ccccchHHH-HHHHHHHH----hccCCeEEEEcCCcccccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEGEKY-VKAVFSLA----SKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG~~E~~-I~~lF~~A----~k~~PsIIfIDEID~L~~~ 1010 (1138)
.+|||.||+|+|||.||+.||+.++.||...|+.++.. .|+|+.-.+ +.++...| .+...+||||||||.+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 47999999999999999999999999999999998854 688887444 44555444 3345689999999999876
Q ss_pred CCCcchHH--HHHHHHHHHHHHhcCCCcc-----------------CCCCEEEEEecCC---------------------
Q 001150 1011 RENPGEHE--AMRKMKNEFMVNWDGLRTK-----------------DTERILVLAATNR--------------------- 1050 (1138)
Q Consensus 1011 r~~~~~~~--al~~il~~LL~~Ldgl~~~-----------------~~~~VLVIaTTN~--------------------- 1050 (1138)
.+++...+ .-.-+.+.||..+.|-... +..++++|+...-
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~ 257 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAE 257 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccccc
Confidence 65543222 1234666777777663211 2245666543210
Q ss_pred -----------------------CCCCcHHHHhcCCceEEecCCCHHHHHHHHHH-----------HHhhCCCC---Ccc
Q 001150 1051 -----------------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV-----------ILAKEDLS---PDV 1093 (1138)
Q Consensus 1051 -----------------------p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~-----------ll~k~~l~---~dv 1093 (1138)
.+-|-|+|+-|++.+..+...+.+...+||.. ++.-.++. .+.
T Consensus 258 ~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~ 337 (408)
T COG1219 258 VKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEE 337 (408)
T ss_pred ccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHH
Confidence 11334788889988888899999988887732 22222332 222
Q ss_pred cHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1094 DFDAIANMT--DGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1094 dl~~LA~~t--eGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
.+..+|+.+ .+-..+-|+.+++....-.+-++
T Consensus 338 AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfel 371 (408)
T COG1219 338 ALKAIAKKAIERKTGARGLRSIIEELLLDVMFEL 371 (408)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhC
Confidence 355555433 23334566666666555544444
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.08 E-value=1.2e-09 Score=116.75 Aligned_cols=182 Identities=23% Similarity=0.321 Sum_probs=127.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-C----CceEEEecccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSSI 972 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-g----~~fi~Id~seL 972 (1138)
..+.||+|.++..+.|.-.... + +- .+++|.||||+|||+-+.++|+++ | --+.++++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~----------g--nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE----------G--NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc----------C--CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 5688999999999998876642 2 22 489999999999999999999998 3 23566776653
Q ss_pred ccccccchHHHHHHHHHHHhc-cC---CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec
Q 001150 973 TSKWFGEGEKYVKAVFSLASK-IA---PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1048 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k-~~---PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT 1048 (1138)
.+ +..-...+ +.|..-+- .+ ..||++||.|.+ ..+.+.++++++... .....+..++
T Consensus 90 RG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiy-----------S~ttRFalaC 150 (333)
T KOG0991|consen 90 RG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIY-----------SNTTRFALAC 150 (333)
T ss_pred cc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHH-----------cccchhhhhh
Confidence 22 11111112 23332222 23 359999999998 456778888877654 1334667789
Q ss_pred CCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHH
Q 001150 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNL 1113 (1138)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L 1113 (1138)
|..+.+-+.+.+|+ .++.+...+..+...-+..+.+.+++. .+..++.+...++|-....|.+|
T Consensus 151 N~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred cchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 99999999999999 677788777777777666666666665 44457777777777766666665
No 181
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=7.3e-09 Score=118.10 Aligned_cols=172 Identities=17% Similarity=0.292 Sum_probs=116.3
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------eEEEecc
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 970 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~--------fi~Id~s 970 (1138)
+|+++.|++.+++.|...+.. .+-++.+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999888752 2233578999999999999999999987332 2233221
Q ss_pred ccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEE
Q 001150 971 SITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1138)
Q Consensus 971 eL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIa 1046 (1138)
.+..+ .-..++.+.+.+.. ....|++||++|.|- ....|.|+..++.. +..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEep----p~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEP----PKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCC----CCCeEEEE
Confidence 11111 11235555443332 345799999999872 22345666666653 34566666
Q ss_pred ecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 001150 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySg 1107 (1138)
+|+.++.+-+.+++|+ .++.|..|+.++...+++..+. ++ .+..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--DI-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--CC-CHHHHHHHHHHcCCCHH
Confidence 7788899999999999 6899999999988877765543 22 23345667777766444
No 182
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=5.6e-09 Score=121.54 Aligned_cols=184 Identities=19% Similarity=0.161 Sum_probs=120.5
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceE-----------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------- 965 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi----------- 965 (1138)
..++++|+|++.+++.|.+.+.. .+-++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35789999999999999988863 233467999999999999999999998832110
Q ss_pred EE---------------ecccccccc---ccc--------hHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcc
Q 001150 966 NI---------------SMSSITSKW---FGE--------GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPG 1015 (1138)
Q Consensus 966 ~I---------------d~seL~s~~---iG~--------~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~ 1015 (1138)
.+ +.+++.--. .+. .-..++.+...+. ...+.||+|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00 001111000 010 1123444444333 2357899999999771
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccH
Q 001150 1016 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDF 1095 (1138)
Q Consensus 1016 ~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl 1095 (1138)
....|.|+..++.. ....++|.+|+.++.+.+.+++|+ ..+.|..|+.++..+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 23445566666543 245677788999999999999999 78999999999998888765321 122223
Q ss_pred HHHHHHcCCCcHHHHHHHH
Q 001150 1096 DAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1096 ~~LA~~teGySgaDL~~L~ 1114 (1138)
..++..+.|-.+. ..+++
T Consensus 222 ~~l~~~s~Gsp~~-Al~ll 239 (365)
T PRK07471 222 AALAALAEGSVGR-ALRLA 239 (365)
T ss_pred HHHHHHcCCCHHH-HHHHh
Confidence 5677777774443 33343
No 183
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.3e-10 Score=123.09 Aligned_cols=228 Identities=21% Similarity=0.257 Sum_probs=160.1
Q ss_pred cccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 001150 382 GILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1138)
Q Consensus 382 ~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1138)
.++|+.+.+=-||+-=|= -+.|+-|++-|..-|+-.++ +-..+|-+-+|=|||.|||| .+++.|.||||+++-.+
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 456666666668885443 67899999988888887666 44678999999999999999 89999999999998776
Q ss_pred EEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 001150 462 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 541 (1138)
Q Consensus 462 ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1138)
..+=|.
T Consensus 205 -----~~~~y~--------------------------------------------------------------------- 210 (423)
T KOG0744|consen 205 -----TNDRYY--------------------------------------------------------------------- 210 (423)
T ss_pred -----ecCccc---------------------------------------------------------------------
Confidence 211111
Q ss_pred ccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccc
Q 001150 542 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 621 (1138)
Q Consensus 542 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 621 (1138)
+|- ..|.|. |.
T Consensus 211 -----------~~~--------------------------------liEins-------------------------hs- 221 (423)
T KOG0744|consen 211 -----------KGQ--------------------------------LIEINS-------------------------HS- 221 (423)
T ss_pred -----------cce--------------------------------EEEEeh-------------------------hH-
Confidence 000 123333 22
Q ss_pred ccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCe--EEEEcchhhhhc------------CCcchhhHHHHHHhcC
Q 001150 622 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPF--ILFMKDAEKSIA------------GNSDSYSTFKSRLEKL 687 (1138)
Q Consensus 622 f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~--ILfiddi~~~l~------------~~~~~~~~lk~~L~~l 687 (1138)
-+|||-.| .-.++..+|+-+.++.+.... .+.|||+|.+.. ...+..|.|...|+++
T Consensus 222 -------LFSKWFsE--SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl 292 (423)
T KOG0744|consen 222 -------LFSKWFSE--SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL 292 (423)
T ss_pred -------HHHHHHhh--hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh
Confidence 24888888 777888888888777665443 457999998763 3445667777777766
Q ss_pred C--CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCH
Q 001150 688 P--DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQD 765 (1138)
Q Consensus 688 ~--g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~ 765 (1138)
. .||+|++.-|..++ +|.|+--|-+-+++|+.|..
T Consensus 293 K~~~NvliL~TSNl~~s-------------------------------------------iD~AfVDRADi~~yVG~Pt~ 329 (423)
T KOG0744|consen 293 KRYPNVLILATSNLTDS-------------------------------------------IDVAFVDRADIVFYVGPPTA 329 (423)
T ss_pred ccCCCEEEEeccchHHH-------------------------------------------HHHHhhhHhhheeecCCccH
Confidence 4 69999999998875 34445555778999999999
Q ss_pred HHHHHHHHHhhhhhhhhh---------------hhcCCcchhhHhhhcCCCCcccccch
Q 001150 766 EALLASWKHQLDRDSETL---------------KMKGNLNHLRTVLGRSGLECEGLETL 809 (1138)
Q Consensus 766 E~rl~ILk~~L~~~~e~l---------------~~~~Nv~~l~~vL~t~glsgaDL~~L 809 (1138)
+++++|||.-+++++..- ..+++.......+.+.|++|+-|+.+
T Consensus 330 ~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkL 388 (423)
T KOG0744|consen 330 EAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKL 388 (423)
T ss_pred HHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhh
Confidence 999999998776655441 12222223333444678888777665
No 184
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.9e-09 Score=122.01 Aligned_cols=189 Identities=21% Similarity=0.392 Sum_probs=121.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-ccccch-HHHHHHHHHHH----hccCCeEEEEcCCcccccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG~~-E~~I~~lF~~A----~k~~PsIIfIDEID~L~~~ 1010 (1138)
.+|||.||+|+|||.||+.||+.++.||.-.||..|.. .|+|+. |..+.+++..| .+.+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999999854 688876 45566777666 3446799999999999733
Q ss_pred CCCcchH-H-HHHHHHHHHHHHhcCCCcc-----------------CCCCEEEEEecCC---------------------
Q 001150 1011 RENPGEH-E-AMRKMKNEFMVNWDGLRTK-----------------DTERILVLAATNR--------------------- 1050 (1138)
Q Consensus 1011 r~~~~~~-~-al~~il~~LL~~Ldgl~~~-----------------~~~~VLVIaTTN~--------------------- 1050 (1138)
....... . .-.-+.+.||.+++|-..+ +..+||+|+...-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 2211110 0 1123445555555442111 2245677664211
Q ss_pred -----------------------------------CCCCcHHHHhcCCceEEecCCCHHHHHHHHHH-----------HH
Q 001150 1051 -----------------------------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV-----------IL 1084 (1138)
Q Consensus 1051 -----------------------------------p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~-----------ll 1084 (1138)
..-|-|+|.-||+..+.|+..+.++..+||.. ++
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf 466 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLF 466 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHh
Confidence 01223788889999999999999988887732 22
Q ss_pred hhCCCC---CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1085 AKEDLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1085 ~k~~l~---~dvdl~~LA~~t--eGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
...++. .+..++.+|+++ .+--.+-|+.+++.+.+.+.-++
T Consensus 467 ~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 467 GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred ccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 212221 233356666543 24344667777777776665443
No 185
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3e-09 Score=118.83 Aligned_cols=137 Identities=21% Similarity=0.367 Sum_probs=88.2
Q ss_pred CCeEEEEcCCcccccCCCCcchHHHHH-HHHHHHHHHhcCCCcc------CCCCEEEEEec----CCCCCCcHHHHhcCC
Q 001150 995 APSVIFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRTK------DTERILVLAAT----NRPFDLDEAVIRRLP 1063 (1138)
Q Consensus 995 ~PsIIfIDEID~L~~~r~~~~~~~al~-~il~~LL~~Ldgl~~~------~~~~VLVIaTT----N~p~~Ld~aLlrRFd 1063 (1138)
+.+||||||||.++.+....+. ..++ -+...||-++.|-... ...++++||+. ..|.+|-|++.-||+
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 3469999999999866542221 2222 3445566666654322 24679999986 468999999999999
Q ss_pred ceEEecCCCHHHHHHHHH-----------HHHhhCCCC---CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhh
Q 001150 1064 RRLMVNLPDAPNRAKILQ-----------VILAKEDLS---PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1138)
Q Consensus 1064 ~~I~v~lPd~eeR~eIL~-----------~ll~k~~l~---~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~e 1129 (1138)
.++++...+.++..+||. .+++.+++. .+..++.||..+-..+ .+..|+--+-.+.-+.++++.-
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN-~~~ENIGARRLhTvlErlLedi 407 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVN-EKTENIGARRLHTVLERLLEDI 407 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhc-ccccchhHHHHHHHHHHHHHHh
Confidence 999999999999988773 233344443 3334566666554322 2455555555555666666665
Q ss_pred hhcc
Q 001150 1130 KKSC 1133 (1138)
Q Consensus 1130 k~~~ 1133 (1138)
.++.
T Consensus 408 SFeA 411 (444)
T COG1220 408 SFEA 411 (444)
T ss_pred CccC
Confidence 5543
No 186
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.01 E-value=7.1e-10 Score=127.28 Aligned_cols=162 Identities=19% Similarity=0.304 Sum_probs=100.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-------CCc--eEEE
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINI 967 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-------g~~--fi~I 967 (1138)
...|.++.|++++++.|.-.+.. ....++||+|+||+|||++|+++|..+ +++ +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35689999999999987754431 112589999999999999999999998 332 2111
Q ss_pred ecc---------cc---------------ccccccch--HHHH---HHHHHH--HhccCCeEEEEcCCcccccCCCCcch
Q 001150 968 SMS---------SI---------------TSKWFGEG--EKYV---KAVFSL--ASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1138)
Q Consensus 968 d~s---------eL---------------~s~~iG~~--E~~I---~~lF~~--A~k~~PsIIfIDEID~L~~~r~~~~~ 1016 (1138)
.+. .+ ....+|.. +..+ ...|.. ..+...++||||||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 100 00 00112210 0000 000110 011123699999999772
Q ss_pred HHHHHHHHHHHHHHh---------cCCCccCCCCEEEEEecCCCC-CCcHHHHhcCCceEEecCCCH-HHHHHHHHHHH
Q 001150 1017 HEAMRKMKNEFMVNW---------DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVIL 1084 (1138)
Q Consensus 1017 ~~al~~il~~LL~~L---------dgl~~~~~~~VLVIaTTN~p~-~Ld~aLlrRFd~~I~v~lPd~-eeR~eIL~~ll 1084 (1138)
..+...|+..| +|.......++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 22333333333 233233456899999999754 689999999999999988766 89899998753
No 187
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.99 E-value=1.6e-09 Score=124.74 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=103.5
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CceEEEec
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 969 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-------~~fi~Id~ 969 (1138)
...|.+|+|+++++..|.-.+.. ....++||.|++|||||++|++++..+. .||. .+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 35699999999999998877653 2236899999999999999999988772 2332 000
Q ss_pred -------cccccc---------------c----ccchHHH------HHHHHHHHh---------ccCCeEEEEcCCcccc
Q 001150 970 -------SSITSK---------------W----FGEGEKY------VKAVFSLAS---------KIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 970 -------seL~s~---------------~----iG~~E~~------I~~lF~~A~---------k~~PsIIfIDEID~L~ 1008 (1138)
..+.+. + .+.++.. +...|.... +...++||||||+.+-
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 000000 0 0111111 111121111 2234799999999882
Q ss_pred cCCCCcchHHHHHHHHHHHHHHh--cCCCccCCCCEEEEEecCCCC-CCcHHHHhcCCceEEecCCC-HHHHHHHHHHHH
Q 001150 1009 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPD-APNRAKILQVIL 1084 (1138)
Q Consensus 1009 ~~r~~~~~~~al~~il~~LL~~L--dgl~~~~~~~VLVIaTTN~p~-~Ld~aLlrRFd~~I~v~lPd-~eeR~eIL~~ll 1084 (1138)
+..+..+...+.+-...+ +|.......++++|+|.|..+ .+.++++.||...+.+..|. .+.+.+|++...
T Consensus 158 -----~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 158 -----DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred -----HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 211222111111100111 233333346899999988655 79999999999999999997 599999998753
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.99 E-value=3.3e-10 Score=113.27 Aligned_cols=112 Identities=24% Similarity=0.380 Sum_probs=70.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc------ccccccc--hHHHHHHHHHHHhccCCeEEEEcCCccccc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGE--GEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL------~s~~iG~--~E~~I~~lF~~A~k~~PsIIfIDEID~L~~ 1009 (1138)
+|||+||||+|||+||+.+|+.++.+++.+.+... .+.+.-. ........+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999887652 2222110 00000000011111 5689999999955
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCcc---------CCC------CEEEEEecCCCC----CCcHHHHhcC
Q 001150 1010 RRENPGEHEAMRKMKNEFMVNWDGLRTK---------DTE------RILVLAATNRPF----DLDEAVIRRL 1062 (1138)
Q Consensus 1010 ~r~~~~~~~al~~il~~LL~~Ldgl~~~---------~~~------~VLVIaTTN~p~----~Ld~aLlrRF 1062 (1138)
...++..|+..++.-... ... .+.+|||+|... .+++++++||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 134444555544432211 011 389999999988 9999999998
No 189
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.7e-09 Score=130.74 Aligned_cols=196 Identities=21% Similarity=0.340 Sum_probs=139.5
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id 968 (1138)
.++-++|-++-++.+.+.+.. . ..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R----------R----~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR----------R----TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc----------c----CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 355678888888777776652 1 12456899999999999999999876 56788899
Q ss_pred cccccc--ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch-HHHHHHHHHHHHHHhcCCCccCCCCEEEE
Q 001150 969 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1138)
Q Consensus 969 ~seL~s--~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~~al~~il~~LL~~Ldgl~~~~~~~VLVI 1045 (1138)
+..+.. +|-|+.|..++.+..++.+..+.|||||||+.+.|.....+. ..+.+-+.-.| ....+-+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEE
Confidence 988844 688999999999999999999999999999999977554332 33433333333 13557778
Q ss_pred EecCC-----CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcCCC-----cHHHH
Q 001150 1046 AATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGY-----SGSDL 1110 (1138)
Q Consensus 1046 aTTN~-----p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~----~l~-~dvdl~~LA~~teGy-----SgaDL 1110 (1138)
|+|.. ...-|+++-||| ..|.+..|+.++-..|++-+-.+. ++. .|..+...+.+++.| -+.--
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKA 382 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKA 382 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchH
Confidence 87753 346789999999 789999999999999998876553 222 333355555554433 33333
Q ss_pred HHHHHHHHH
Q 001150 1111 KNLCVTAAH 1119 (1138)
Q Consensus 1111 ~~L~~~Aa~ 1119 (1138)
..|+.+|+.
T Consensus 383 IDLiDeA~a 391 (786)
T COG0542 383 IDLLDEAGA 391 (786)
T ss_pred HHHHHHHHH
Confidence 445555443
No 190
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.98 E-value=1.8e-09 Score=123.93 Aligned_cols=139 Identities=27% Similarity=0.433 Sum_probs=92.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc--ccccchHHHH------------HHHHHHHhccCCeEEEEc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEKYV------------KAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s--~~iG~~E~~I------------~~lF~~A~k~~PsIIfID 1002 (1138)
.++||.||||+|||+||+++|..++.+|+++.+..-+. ..+|...-.. +-+|.... +|+|+|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 47999999999999999999999999999999864321 1222211110 11121111 499999
Q ss_pred CCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-ccCCCCEEEEEecC-----CCCCCcHHHHhcCCceEEecCC-CHHH
Q 001150 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDTERILVLAATN-----RPFDLDEAVIRRLPRRLMVNLP-DAPN 1075 (1138)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-~~~~~~VLVIaTTN-----~p~~Ld~aLlrRFd~~I~v~lP-d~ee 1075 (1138)
||++. .+..+.++..++++.-..+.+.. ..-..++++|+|+| ....+++++++||...+.++.| ..++
T Consensus 120 EInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e 194 (329)
T COG0714 120 EINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEE 194 (329)
T ss_pred ccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHH
Confidence 99855 33333444444444333344444 44557899999999 4568899999999989999999 5555
Q ss_pred HHHHHHHHH
Q 001150 1076 RAKILQVIL 1084 (1138)
Q Consensus 1076 R~eIL~~ll 1084 (1138)
...++....
T Consensus 195 ~~~i~~~~~ 203 (329)
T COG0714 195 ERIILARVG 203 (329)
T ss_pred HHHHHHhCc
Confidence 555544443
No 191
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.97 E-value=1.2e-08 Score=107.65 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=98.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCc------------------------eEEEeccccccccccchHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 990 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg~~------------------------fi~Id~seL~s~~iG~~E~~I~~lF~~ 990 (1138)
.+..+||+||+|+|||++|+++|+.+... +..+.... .. ..-..++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 34679999999999999999999998432 22221110 00 112345555655
Q ss_pred Hhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceE
Q 001150 991 ASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRL 1066 (1138)
Q Consensus 991 A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I 1066 (1138)
+.. ....||||||+|.|- ....+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 544 245799999999882 22345566666553 235667777777789999999999 689
Q ss_pred EecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCC
Q 001150 1067 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGY 1105 (1138)
Q Consensus 1067 ~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGy 1105 (1138)
.|..|+.++..++++.. ++. +..+..++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCCC
Confidence 99999999988888775 343 34467777777664
No 192
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.96 E-value=1.2e-08 Score=119.07 Aligned_cols=170 Identities=19% Similarity=0.314 Sum_probs=116.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccC
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~ 1010 (1138)
.+.++||||.|.|||+|++|++++. +..++.+....++..++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3569999999999999999999988 34577777766655544443333334566656 5579999999998655
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC---CCcHHHHhcCCc--eEEecCCCHHHHHHHHHHHHh
Q 001150 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 1085 (1138)
Q Consensus 1011 r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd~--~I~v~lPd~eeR~eIL~~ll~ 1085 (1138)
... ++..-.++|.+. . ..+-+|+.+-..|. .+.+.+++||.. ++.+..|+.+.|..|++....
T Consensus 191 ~~~---qeefFh~FN~l~-------~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ERT---QEEFFHTFNALL-------E--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hhH---HHHHHHHHHHHH-------h--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 322 333344444442 1 23445555545565 455899999965 466789999999999999888
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1086 k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
..++. ++.-+..||..... +.++|..++......
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 87776 44447778877764 566777766554443
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.96 E-value=5.4e-09 Score=100.66 Aligned_cols=127 Identities=33% Similarity=0.463 Sum_probs=82.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc---eEEEeccccccc--------------cccchHHHHHHHHHHHhccCCeEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVI 999 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~---fi~Id~seL~s~--------------~iG~~E~~I~~lF~~A~k~~PsII 999 (1138)
..++|+||||+|||++++++|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999664 888887654322 112344566788899988888999
Q ss_pred EEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC-CCCCcHHHHhcCCceEEecCC
Q 001150 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-PFDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~-p~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
||||++.+.... ................ ........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999885321 1111000000000000 011356788888886 445555666688888877554
No 194
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.96 E-value=1e-08 Score=123.52 Aligned_cols=159 Identities=24% Similarity=0.343 Sum_probs=100.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHH--------hccCCeEEEEcCCcccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA--------SKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A--------~k~~PsIIfIDEID~L~ 1008 (1138)
+-+||+||||-|||+||+.||+.+|+.+++|++++-.+ ...++.....| ....|.+|+|||||--
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa- 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA- 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-
Confidence 44789999999999999999999999999999988422 22233222222 2257999999999922
Q ss_pred cCCCCcchHHHHHHHHHHHHHH---hcCCCccCC----------CCEEEEEecCCCCCCcHHHH--hcCCceEEecCCCH
Q 001150 1009 GRRENPGEHEAMRKMKNEFMVN---WDGLRTKDT----------ERILVLAATNRPFDLDEAVI--RRLPRRLMVNLPDA 1073 (1138)
Q Consensus 1009 ~~r~~~~~~~al~~il~~LL~~---Ldgl~~~~~----------~~VLVIaTTN~p~~Ld~aLl--rRFd~~I~v~lPd~ 1073 (1138)
...+.+.++..+... .-|-..... -.--||+.||.... |+++ +-|..++.|..|..
T Consensus 400 -------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 400 -------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred -------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCCh
Confidence 122222222222110 111110000 01236777887654 5544 47889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCcHHHHH
Q 001150 1074 PNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLK 1111 (1138)
Q Consensus 1074 eeR~eIL~~ll~k~~l~~d-vdl~~LA~~teGySgaDL~ 1111 (1138)
....+-|+.++..+++..+ ..+..|++++++-..+.|.
T Consensus 471 s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCIN 509 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMRADSKALNALCELTQNDIRSCIN 509 (877)
T ss_pred hHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999887633 3356666666654444333
No 195
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.95 E-value=3.6e-09 Score=103.41 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcccCC-CeEEEEcchhhhhcCC--------cchhhHHHHHHhcCCC---cEEEEeecccCCCcccc
Q 001150 641 LLINTLFEVVFSESRSC-PFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLPD---KVIVIGSHTHTDNRKEK 706 (1138)
Q Consensus 641 ~~i~~L~ev~~~~~~~~-p~ILfiddi~~~l~~~--------~~~~~~lk~~L~~l~g---~VvvIGstt~~d~~d~k 706 (1138)
..+..+|+.+.. .. |+||||||+|.+.... ....+.|...|+.... +++|||++|..+.+++.
T Consensus 44 ~~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~ 118 (132)
T PF00004_consen 44 QKIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPA 118 (132)
T ss_dssp HHHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHH
T ss_pred cccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHh
Confidence 356666776666 55 9999999999988755 4445556666655544 69999999987654444
No 196
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1e-08 Score=117.06 Aligned_cols=180 Identities=12% Similarity=0.198 Sum_probs=121.1
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc----------eEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~----------fi~Id 968 (1138)
.|++++|++.+++.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 478999999999999998863 2223689999999999999999999998322 11122
Q ss_pred cccccccc-----ccc--------------------hHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHH
Q 001150 969 MSSITSKW-----FGE--------------------GEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEA 1019 (1138)
Q Consensus 969 ~seL~s~~-----iG~--------------------~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~a 1019 (1138)
.+++.--. .|. .-..++.+...+.. ....|++||++|.|-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 22221000 010 01134555444443 246799999999882
Q ss_pred HHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHH
Q 001150 1020 MRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIA 1099 (1138)
Q Consensus 1020 l~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA 1099 (1138)
....|.|+..|+..+ +.++|.+|+.++.|-+.+++|+ ..+.|..++.++..+++......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEPp-----~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEPG-----NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCCC-----CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 233455666665532 3466777889999999999999 88999999999999988876432221 22357888
Q ss_pred HHcCCCcHHHHH
Q 001150 1100 NMTDGYSGSDLK 1111 (1138)
Q Consensus 1100 ~~teGySgaDL~ 1111 (1138)
..+.|-.+..+.
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 888885554443
No 197
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=3.3e-09 Score=125.44 Aligned_cols=202 Identities=23% Similarity=0.302 Sum_probs=125.3
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc-
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL- 972 (1138)
..+|++|+|-......+.+.+.. + .+....|||.|.+||||..+|++|-+.. +.|||.++|+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-------~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-------I-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-------h-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999998888777776642 1 2223579999999999999999999888 789999999765
Q ss_pred ----ccccccchHHH--------HHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCC
Q 001150 973 ----TSKWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 1040 (1138)
Q Consensus 973 ----~s~~iG~~E~~--------I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~ 1040 (1138)
.+.++|...+. -..+|+.|.. +.||||||..| +..-+.-+-+++++--..--|....-..
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 33344432221 1235565554 79999999987 3233333334444321111111122235
Q ss_pred CEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHhh----CCCC-Cccc---HHHHHHH
Q 001150 1041 RILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS-PDVD---FDAIANM 1101 (1138)
Q Consensus 1041 ~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~k----~~l~-~dvd---l~~LA~~ 1101 (1138)
.|.||||||+. ..+.+.+--|+ .++.+..|...+|.+ +...++.+ .+.. ..+. +..|.+.
T Consensus 381 DVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 381 DVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 79999999973 23333444477 678888888877764 33444433 2211 2233 3333333
Q ss_pred cCCCcHHHHHHHHHHHHH
Q 001150 1102 TDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1102 teGySgaDL~~L~~~Aa~ 1119 (1138)
.---+-++|+|+++.|+.
T Consensus 460 ~WPGNVRELeNviER~v~ 477 (560)
T COG3829 460 DWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCchHHHHHHHHHHHHh
Confidence 222255899999998885
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=98.93 E-value=1.1e-08 Score=128.77 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=119.9
Q ss_pred CCCCceEEEEC--CCCCCHHHHHHHHHHHh-----CCceEEEeccccccccccchHHHHHHHHHHHhcc------CCeEE
Q 001150 933 TKPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKI------APSVI 999 (1138)
Q Consensus 933 ~rP~~gILL~G--PPGTGKT~LArALA~el-----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~------~PsII 999 (1138)
.-|.-+-+..| |++.|||++|.+||+++ +.+++.+++++..+ -..++++...+... ...||
T Consensus 561 ~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 561 HVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred ccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 34545567788 99999999999999998 56899999988432 12455555443322 23699
Q ss_pred EEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHH
Q 001150 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKI 1079 (1138)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eI 1079 (1138)
||||+|.|- . ...+.|+..|+.. ...+.+|++||.+..+.+++++|| ..+.|..|+.++....
T Consensus 635 IIDEaD~Lt-----~-------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 635 FLDEADALT-----Q-------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred EEECcccCC-----H-------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHH
Confidence 999999882 2 2334455555442 357889999999999999999999 8899999999999999
Q ss_pred HHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1080 LQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1080 L~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
++.++.++++. ++..+..|+..++|-.+..| ++++.++
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~ 736 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAA 736 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 99998887765 45568899999998555444 5555544
No 199
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2.4e-08 Score=114.74 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=103.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCc------------------------eEEEeccccccccccchHHHHHHHHH
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 989 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~------------------------fi~Id~seL~s~~iG~~E~~I~~lF~ 989 (1138)
+.++.+||+||+|+||+++|+++|+.+.+. ++.+.... .+.. -.-..++++..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCC--CCHHHHHHHHH
Confidence 334679999999999999999999998542 22221110 0000 11234555555
Q ss_pred HHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCce
Q 001150 990 LASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1065 (1138)
Q Consensus 990 ~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~ 1065 (1138)
.+.. ....|++||++|.|- ....|.|+..++.- +.++++|.+|+.++.|.+.+++|+ ..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc-~~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRC-QQ 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhc-ee
Confidence 5543 346799999999882 23445666666553 357888999999999999999999 67
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHH
Q 001150 1066 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1066 I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySga 1108 (1138)
+.|..|+.++..+.+..... ...+.+...++.++.|-.+.
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLR 199 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHH
Confidence 99999999988888765431 12334456677777775543
No 200
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.90 E-value=1.4e-08 Score=119.71 Aligned_cols=122 Identities=23% Similarity=0.295 Sum_probs=77.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--ce-----EEEecc----cccccc----ccc--hHHHHHHHHHHHhcc--CCe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA--NF-----INISMS----SITSKW----FGE--GEKYVKAVFSLASKI--APS 997 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~--~f-----i~Id~s----eL~s~~----iG~--~E~~I~~lF~~A~k~--~Ps 997 (1138)
++++|+||||||||++|+++|..+.. .+ +.+... +++..+ .|. ..+.+.++...|... .|.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 47999999999999999999998842 22 222211 122111 110 012234455566553 479
Q ss_pred EEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCC------------------CccCCCCEEEEEecCCCC----CCc
Q 001150 998 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL------------------RTKDTERILVLAATNRPF----DLD 1055 (1138)
Q Consensus 998 IIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl------------------~~~~~~~VLVIaTTN~p~----~Ld 1055 (1138)
|||||||++-- ..+++.++++.++.- .-.-+.++.||||+|..+ .+|
T Consensus 275 vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 275 VFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred EEEEehhhccC-----------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 99999999541 234445555544421 012247899999999887 899
Q ss_pred HHHHhcCCceEEecC
Q 001150 1056 EAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1056 ~aLlrRFd~~I~v~l 1070 (1138)
.|++||| ..|.+.+
T Consensus 344 ~AlrRRF-~fi~i~p 357 (459)
T PRK11331 344 YALRRRF-SFIDIEP 357 (459)
T ss_pred HHHHhhh-heEEecC
Confidence 9999999 5566654
No 201
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.89 E-value=2.6e-09 Score=125.21 Aligned_cols=82 Identities=21% Similarity=0.401 Sum_probs=71.7
Q ss_pred cceeeeCCeEEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEeCCCceEEc--CeeccCCCeeEccCCCEE
Q 001150 138 SNVPICASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVN--GKNLKKNTSCELRSGDEV 213 (1138)
Q Consensus 138 ~~~~i~~~~~tvGr~~~cd~~l~~~~--~s~~hcki~~~~~~~~~~~~led~s~nGt~VN--g~~~gk~~~~~L~~gDeI 213 (1138)
..+.+....++|||+..||++|.+.. ||..||+|.... + ..||+|+|+|||||| |..|+++..+.|+.||+|
T Consensus 17 ~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~--g--~~~l~DlStNGT~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 17 AQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYRD--G--AYLLTDLSTNGVFLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred eEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEEC--C--EEEEEECCCCCeEECCCCCCCCCCCceEcCCCCEE
Confidence 46777788999999999999999998 999999999752 2 479999999999999 999999999999999999
Q ss_pred EEeecCCeeE
Q 001150 214 VFGSLGNHAY 223 (1138)
Q Consensus 214 ~f~~~~~~ay 223 (1138)
.|+...-+++
T Consensus 93 ~iG~~~lrv~ 102 (396)
T TIGR03354 93 RLGDYEIRVS 102 (396)
T ss_pred EECCEEEEEE
Confidence 9977544433
No 202
>PRK09087 hypothetical protein; Validated
Probab=98.89 E-value=3.1e-08 Score=108.21 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=96.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1016 (1138)
+.++|+||+|+|||+|+++++...+..++.. ..+.. .++..... .+|+|||++.+. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998876553333 22111 11111111 589999999762 11
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC---CCcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCCCC-
Q 001150 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS- 1090 (1138)
Q Consensus 1017 ~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~l~- 1090 (1138)
...+-.+++.+. +..+.+||+++..|. ...+.+++||. .++.+..|+.++|.++++..+...++.
T Consensus 103 ~~~lf~l~n~~~---------~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVR---------QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHH---------hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 233444444442 123456666655543 23678999985 678899999999999999999887665
Q ss_pred CcccHHHHHHHcCCCcHHHHHHHHHH
Q 001150 1091 PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1138)
Q Consensus 1091 ~dvdl~~LA~~teGySgaDL~~L~~~ 1116 (1138)
++..++.|++...| +.+.+..++..
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~ 198 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDR 198 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence 44557888888875 34445444333
No 203
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.8e-08 Score=112.53 Aligned_cols=200 Identities=20% Similarity=0.295 Sum_probs=127.7
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----ceEEEeccccccc-
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSK- 975 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-----~fi~Id~seL~s~- 975 (1138)
.+.+.+...+.|...+...+. + ..| .+++++|+||||||.+++.++.++.- .+++++|..+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 367778888888777653222 1 234 46999999999999999999999833 3899998654221
Q ss_pred --------------cccch-HHHHHHHHHHHhc-cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCC
Q 001150 976 --------------WFGEG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1039 (1138)
Q Consensus 976 --------------~iG~~-E~~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~ 1039 (1138)
..|.+ ......+++...+ ....||+|||+|.|..+.. .++-.|+.... ...
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~----~~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPG----ENK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcc----ccc
Confidence 11111 1222333333333 3567999999999975432 23333322222 225
Q ss_pred CCEEEEEecCCC---CCCcHHHHhcCC-ceEEecCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHH---cCCCcHHH
Q 001150 1040 ERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANM---TDGYSGSD 1109 (1138)
Q Consensus 1040 ~~VLVIaTTN~p---~~Ld~aLlrRFd-~~I~v~lPd~eeR~eIL~~ll~k~---~l~~dvdl~~LA~~---teGySgaD 1109 (1138)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|...|++...... +.-.+.-++.+|.. ..| ..+-
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 678999999975 578889998773 458899999999999999987642 11222234444433 334 3444
Q ss_pred HHHHHHHHHHHHHHHH
Q 001150 1110 LKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1110 L~~L~~~Aa~~ai~ei 1125 (1138)
...+|+.|+..|-++-
T Consensus 234 aidilr~A~eiAe~~~ 249 (366)
T COG1474 234 AIDILRRAGEIAEREG 249 (366)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 5567788877766443
No 204
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.88 E-value=9.3e-09 Score=116.28 Aligned_cols=146 Identities=20% Similarity=0.299 Sum_probs=97.5
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--------------------
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 961 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-------------------- 961 (1138)
++.+.+.....+...+... + +-++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------G---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------C---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 4455666666666665421 1 1113599999999999999999999996
Q ss_pred ----CceEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcC
Q 001150 962 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1033 (1138)
Q Consensus 962 ----~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldg 1033 (1138)
..|+.++.++..... -....++.+-+..... ...||+|||+|.|- ....+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 467777776643321 1233444444444333 46799999999883 2334445444443
Q ss_pred CCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHH
Q 001150 1034 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1138)
Q Consensus 1034 l~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~e 1078 (1138)
...+..+|.+||.+..+-+.+++|+ ..+.|..|+...+..
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHH
Confidence 2467888999999999999999999 778887755444433
No 205
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.87 E-value=3.2e-08 Score=114.00 Aligned_cols=155 Identities=18% Similarity=0.328 Sum_probs=98.0
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-------CCceE-------
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------- 965 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-------g~~fi------- 965 (1138)
|..|+|+++++..|.-.+..+ ...++||.|++|+|||+|+++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 678999999998876555421 13579999999999999999999887 33222
Q ss_pred ------EE------------------eccc--cccccccchH--HHH--------HHHHHHHhccCCeEEEEcCCccccc
Q 001150 966 ------NI------------------SMSS--ITSKWFGEGE--KYV--------KAVFSLASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 966 ------~I------------------d~se--L~s~~iG~~E--~~I--------~~lF~~A~k~~PsIIfIDEID~L~~ 1009 (1138)
+. +++. .....+|... ..+ ..++. +....+||||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhCC-
Confidence 00 0000 0011222210 000 00111 1234799999999872
Q ss_pred CCCCcchHHHHHHHHHHHHHHh---------cCCCccCCCCEEEEEecCCCC-CCcHHHHhcCCceEEecCCCH-HHHHH
Q 001150 1010 RRENPGEHEAMRKMKNEFMVNW---------DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAK 1078 (1138)
Q Consensus 1010 ~r~~~~~~~al~~il~~LL~~L---------dgl~~~~~~~VLVIaTTN~p~-~Ld~aLlrRFd~~I~v~lPd~-eeR~e 1078 (1138)
..+...|+..| +|.......++++|+|.|..+ .+.++++.||...+.++.|.. ++|.+
T Consensus 145 -----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 145 -----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred -----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 12223333333 222222346799999998654 799999999999999988865 88888
Q ss_pred HHHHH
Q 001150 1079 ILQVI 1083 (1138)
Q Consensus 1079 IL~~l 1083 (1138)
|++..
T Consensus 214 IL~~~ 218 (337)
T TIGR02030 214 IVERR 218 (337)
T ss_pred HHHhh
Confidence 88774
No 206
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.87 E-value=7.1e-08 Score=108.85 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
|+-++..++.|+ .+|...+.+.++.++|++.....+++. .+..++.|+..-.--+-+.-.+|+.-|...|-+
T Consensus 342 PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~ 414 (450)
T COG1224 342 PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKR 414 (450)
T ss_pred CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHH
Confidence 778899999999 788888899999999999999887766 344477777776655656666666655544433
No 207
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.85 E-value=2e-08 Score=115.46 Aligned_cols=169 Identities=17% Similarity=0.251 Sum_probs=101.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc-----cccchHHH-------HHHHHHHHhccCCeEEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~-----~iG~~E~~-------I~~lF~~A~k~~PsIIfI 1001 (1138)
..|||+|++||||+++|++|.... +.||+.++|..+... .+|..... ....|..| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 469999999999999999998776 579999999875322 11211000 01123333 3589999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEE
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1067 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1067 (1138)
|||+.|- ..+...|+..++... .....++.+|++|+.. ..+.+.+..|| ..+.
T Consensus 100 dei~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl-~~~~ 166 (329)
T TIGR02974 100 DELATAS------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRL-AFDV 166 (329)
T ss_pred CChHhCC------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHh-cchh
Confidence 9999882 222333333332211 1113567899998753 35667788888 3566
Q ss_pred ecCCCHHHHHH----HHHHHHhh----CCCC--CcccH---HHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1068 VNLPDAPNRAK----ILQVILAK----EDLS--PDVDF---DAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1068 v~lPd~eeR~e----IL~~ll~k----~~l~--~dvdl---~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
+.+|...+|.+ +++.++.. .+.. ..+.. ..|....---+.++|+++++.|+..+
T Consensus 167 i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 167 ITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 77777776654 44444433 2222 23343 34443332335688888888887654
No 208
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.84 E-value=9.7e-09 Score=119.56 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=119.9
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEecccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL 972 (1138)
...+.+++|.....+.+.+.+.. + ..-..+|||+|++||||+.+|++|.... +.|||.++|..+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34577888887777777776653 1 1112469999999999999999997443 679999999887
Q ss_pred ccc-----cccch-------HHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH-hcCCCccCC
Q 001150 973 TSK-----WFGEG-------EKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN-WDGLRTKDT 1039 (1138)
Q Consensus 973 ~s~-----~iG~~-------E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~-Ldgl~~~~~ 1039 (1138)
... .+|.. ...-..+|+.|.. ++||+|||..| ....+..+-+++++--.. +.+ .....
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~-~~~~~ 212 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGG-SQPRP 212 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCC-CCCcC
Confidence 332 22211 1122345555554 89999999988 333333333333321111 111 22234
Q ss_pred CCEEEEEecCCC--CCCcH--HHHhcCCceEEecCCCHHHHHH--------HHHHHHhhCCCCCcccH----HHHHHH-c
Q 001150 1040 ERILVLAATNRP--FDLDE--AVIRRLPRRLMVNLPDAPNRAK--------ILQVILAKEDLSPDVDF----DAIANM-T 1102 (1138)
Q Consensus 1040 ~~VLVIaTTN~p--~~Ld~--aLlrRFd~~I~v~lPd~eeR~e--------IL~~ll~k~~l~~dvdl----~~LA~~-t 1102 (1138)
..|.+|++|+.. +.+-. .+.+|. ..+.+.+|...+|.. +++.+..+.+.....+. ..|-.. .
T Consensus 213 ~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~ 291 (403)
T COG1221 213 VDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDW 291 (403)
T ss_pred CCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 678888888752 33333 455533 345667777777643 33344444444422222 222222 2
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 001150 1103 DGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1103 eGySgaDL~~L~~~Aa~~ai 1122 (1138)
.| +.++|+|+++.++..+.
T Consensus 292 pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 292 PG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred CC-cHHHHHHHHHHHHHHhc
Confidence 23 56799999999988774
No 209
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.84 E-value=1.4e-08 Score=120.09 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=130.0
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc---
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI--- 972 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL--- 972 (1138)
...+++|.....+.+.+.+.. . ......|||+|++||||-.+|++|.... +.||+.++|..+
T Consensus 139 ~~~~liG~S~am~~l~~~i~k-------v-----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK-------V-----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456788888888888887752 1 1122469999999999999999999887 679999999775
Q ss_pred --ccccccchHH----HH---HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEE
Q 001150 973 --TSKWFGEGEK----YV---KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1043 (1138)
Q Consensus 973 --~s~~iG~~E~----~I---~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VL 1043 (1138)
-+..+|...+ .. ...|+.|.. +.||||||..| ....+.-+-+++++--..--|....-+-.|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 2223442221 11 124555544 89999999987 2222222222222211001111112235689
Q ss_pred EEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHh----hCCCC-CcccHHHHHHHcCC-C-
Q 001150 1044 VLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA----KEDLS-PDVDFDAIANMTDG-Y- 1105 (1138)
Q Consensus 1044 VIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~----k~~l~-~dvdl~~LA~~teG-y- 1105 (1138)
||++||.. ..+.+.+.-|+ .++.+..|...+|.+ ++++++. ..+.. ..+.-+.++.+..- +
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999973 34556677788 789999999888875 4444443 33332 45566666665542 2
Q ss_pred -cHHHHHHHHHHHHHHHHHHHH
Q 001150 1106 -SGSDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1106 -SgaDL~~L~~~Aa~~ai~eii 1126 (1138)
+.++|+|+++.++..+-.+.+
T Consensus 358 GNVREL~N~ver~~il~~~~~i 379 (464)
T COG2204 358 GNVRELENVVERAVILSEGPEI 379 (464)
T ss_pred hHHHHHHHHHHHHHhcCCcccc
Confidence 447888888888776544433
No 210
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=9.5e-08 Score=109.96 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=102.6
Q ss_pred ccccccc-hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 899 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 899 sfdDI~G-le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.|+.|.| ++.+.+.|+..+.. .+.++.+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88888988887752 2334678999999999999999999998432
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
+..+... +..+ .-..++.+.+.+. .....|++|||+|.+- ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 1111110 1101 1123444444433 2245799999999772 234456666
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQ 1081 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~ 1081 (1138)
.++.. +..+++|.+|+.+..|-+++++|+ .++.|..|+.++..++++
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 66653 356777788888899999999999 889999999988766665
No 211
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.82 E-value=1e-08 Score=127.30 Aligned_cols=156 Identities=21% Similarity=0.342 Sum_probs=103.4
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-------------------
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------- 960 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el------------------- 960 (1138)
|.+|+|++.++..|.-.+..+ ...+|||.|++|||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 678999999998876655421 12579999999999999999999988
Q ss_pred ----------------CCceEEEeccccccccccch--HHHHH--------HHHHHHhccCCeEEEEcCCcccccCCCCc
Q 001150 961 ----------------GANFINISMSSITSKWFGEG--EKYVK--------AVFSLASKIAPSVIFVDEVDSMLGRRENP 1014 (1138)
Q Consensus 961 ----------------g~~fi~Id~seL~s~~iG~~--E~~I~--------~lF~~A~k~~PsIIfIDEID~L~~~r~~~ 1014 (1138)
..+|+.+.+......++|.. +..+. .++. ....+|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~---~A~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLA---EAHRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCccee---ecCCCeEEeChhhhCC------
Confidence 25666665554433444432 11110 0111 1133699999999872
Q ss_pred chHHHHHHHHHHHHHHhcC---------CCccCCCCEEEEEecCCC-CCCcHHHHhcCCceEEecCC-CHHHHHHHHHHH
Q 001150 1015 GEHEAMRKMKNEFMVNWDG---------LRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVI 1083 (1138)
Q Consensus 1015 ~~~~al~~il~~LL~~Ldg---------l~~~~~~~VLVIaTTN~p-~~Ld~aLlrRFd~~I~v~lP-d~eeR~eIL~~l 1083 (1138)
..+.+.|+..|+. .......++++|+|+|.. ..+.++++.||+..+.++.+ +.+++.++++..
T Consensus 140 ------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 140 ------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 2333444444432 222233679999999854 46889999999988888766 467778887764
Q ss_pred H
Q 001150 1084 L 1084 (1138)
Q Consensus 1084 l 1084 (1138)
+
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
No 212
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.82 E-value=2e-09 Score=115.24 Aligned_cols=45 Identities=42% Similarity=0.599 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el 960 (1138)
|.||.|++.+|..|.-.... ..++||+||||||||++|+++...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999877753 1589999999999999999999776
No 213
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.81 E-value=2.7e-08 Score=120.84 Aligned_cols=195 Identities=18% Similarity=0.282 Sum_probs=118.2
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHH-----------hCCceEE
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 966 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~e-----------lg~~fi~ 966 (1138)
.+|++++|.....+.+.+.+.. +. .....|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 4578899998888888877752 11 11246999999999999999999887 3689999
Q ss_pred Eecccccc-----ccccchHHH--------HHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcC
Q 001150 967 ISMSSITS-----KWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1033 (1138)
Q Consensus 967 Id~seL~s-----~~iG~~E~~--------I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldg 1033 (1138)
++|..+.. ..+|..++. -..+|+.|. .+.||||||+.|- ..+...|+..++.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp------------~~~Q~kLl~~L~e 348 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP------------LPLQTRLLRVLEE 348 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC------------HHHHHHHHhhhhc
Confidence 99987632 223322111 112455443 4799999999882 2222333333322
Q ss_pred CC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHhh----CCCCC
Q 001150 1034 LR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLSP 1091 (1138)
Q Consensus 1034 l~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~k----~~l~~ 1091 (1138)
.. ..-...+.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+ .+..-
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 11 1112356889888764 12445566677 567788888777754 55556554 22221
Q ss_pred ccc-H-------HHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1092 DVD-F-------DAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1092 dvd-l-------~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
..+ + ..|....---+.++|+++++.++..
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111 1 1222222223568999999988764
No 214
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.80 E-value=4.9e-08 Score=111.74 Aligned_cols=105 Identities=22% Similarity=0.323 Sum_probs=59.3
Q ss_pred CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC------------CCCCcHHHHhcC
Q 001150 995 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------PFDLDEAVIRRL 1062 (1138)
Q Consensus 995 ~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~------------p~~Ld~aLlrRF 1062 (1138)
-|+||||||++.| +-.-..++++. ++. +-.+++|+ +||+ |+-++..|+.|+
T Consensus 278 vpGVLFIDEvHmL-----DiEcFsfLnra-------lEs----~~sPiiIl-ATNRg~~~irGt~~~sphGiP~DlLDRl 340 (398)
T PF06068_consen 278 VPGVLFIDEVHML-----DIECFSFLNRA-------LES----ELSPIIIL-ATNRGITKIRGTDIISPHGIPLDLLDRL 340 (398)
T ss_dssp EE-EEEEESGGGS-----BHHHHHHHHHH-------HTS----TT--EEEE-EES-SEEE-BTTS-EEETT--HHHHTTE
T ss_pred ecceEEecchhhc-----cHHHHHHHHHH-------hcC----CCCcEEEE-ecCceeeeccCccCcCCCCCCcchHhhc
Confidence 3778888888876 11111222221 221 23455555 5553 678889999999
Q ss_pred CceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001150 1063 PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1138)
Q Consensus 1063 d~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~A 1117 (1138)
.+|...+++.++..+|++..++.+++. .+..++.|+......+-+...+|+..|
T Consensus 341 -lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 341 -LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp -EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred -EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 889999999999999999999998876 333466666666555555555555544
No 215
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=2.4e-08 Score=116.91 Aligned_cols=202 Identities=19% Similarity=0.269 Sum_probs=124.7
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc-
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL- 972 (1138)
...+.+|+|.......+.+.|... .+....|||.|.+||||-.+|++|-+.. +-||+.++|+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 567788999998888888877531 1222479999999999999999999888 789999999765
Q ss_pred ----ccccccchHH----HH---HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc--CC
Q 001150 973 ----TSKWFGEGEK----YV---KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK--DT 1039 (1138)
Q Consensus 973 ----~s~~iG~~E~----~I---~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~--~~ 1039 (1138)
.+..+|.-.+ .+ ..-|+.|.. +.||+|||..| ....+..+-+++++- .+..+..+ -.
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----PL~lQaKLLRvLQeg--EieRvG~~r~ik 356 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----PLALQAKLLRVLQEG--EIERVGGDRTIK 356 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----CHHHHHHHHHHHhhc--ceeecCCCceeE
Confidence 2333332211 11 123444444 79999999987 333333344444432 22222211 12
Q ss_pred CCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHH----hhCCC-CCcccHHHHHHHcC
Q 001150 1040 ERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVIL----AKEDL-SPDVDFDAIANMTD 1103 (1138)
Q Consensus 1040 ~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll----~k~~l-~~dvdl~~LA~~te 1103 (1138)
-.|.|||+||+- ..+...+.-|+ .++.+.+|...+|.+ +.+.++ .+.+. ...+..+.+..+..
T Consensus 357 VDVRiIAATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 357 VDVRVIAATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEEeccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 468999999972 12223333366 566777888777753 333333 33443 22233344443333
Q ss_pred ---CCcHHHHHHHHHHHHHHH
Q 001150 1104 ---GYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1104 ---GySgaDL~~L~~~Aa~~a 1121 (1138)
--+-++|+++++.|+..+
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 225589999999999877
No 216
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.79 E-value=2.3e-08 Score=122.08 Aligned_cols=197 Identities=18% Similarity=0.229 Sum_probs=119.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~ 973 (1138)
..++++++|.....+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3578899999888888777765311 122469999999999999999999886 6799999998763
Q ss_pred cc-----cccchHHHH-------HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc-----
Q 001150 974 SK-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT----- 1036 (1138)
Q Consensus 974 s~-----~iG~~E~~I-------~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~----- 1036 (1138)
.. .+|...+.. ...|..+ ..++||||||+.|- ..+...|+..++....
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS------------PAFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC------------HHHHHHHHHHHhcCcEEECCC
Confidence 22 112111000 0012222 35899999999882 2223334444432211
Q ss_pred --cCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHH----HHHHHHHHhhC----CCCCccc---HH
Q 001150 1037 --KDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAKE----DLSPDVD---FD 1096 (1138)
Q Consensus 1037 --~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR----~eIL~~ll~k~----~l~~dvd---l~ 1096 (1138)
.....+.+|+||+.. ..+.+.+..|+ ..+.+.+|...+| ..+++.++.+. +....++ +.
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 111357888888753 35667777788 3455666655544 45666665532 2212233 44
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1097 AIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1097 ~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
.|....---+.++|+++++.|+..+
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 4444433336688999999888654
No 217
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.79 E-value=4.1e-08 Score=119.21 Aligned_cols=197 Identities=17% Similarity=0.235 Sum_probs=121.2
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 975 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~ 975 (1138)
.+.+++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 3567888888887777777531 1112469999999999999999999886 579999999876321
Q ss_pred -----cccchHHH----H---HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------c
Q 001150 976 -----WFGEGEKY----V---KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------T 1036 (1138)
Q Consensus 976 -----~iG~~E~~----I---~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~ 1036 (1138)
++|..... . ...|+.| ..++|||||||.|- ..+...|+..++... .
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP------------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC------------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 22211110 0 1124433 35899999999882 222333333333211 1
Q ss_pred cCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHhh----CCC-CCccc---HHH
Q 001150 1037 KDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDL-SPDVD---FDA 1097 (1138)
Q Consensus 1037 ~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~k----~~l-~~dvd---l~~ 1097 (1138)
.....+.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+ .+. ...+. +..
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 112467899998763 35667777788 457788888777754 44444433 221 12333 344
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1098 IANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1098 LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
|....--.+.++|+++++.|+..+..
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 44433334668999999998876543
No 218
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.78 E-value=2.5e-09 Score=106.31 Aligned_cols=113 Identities=31% Similarity=0.446 Sum_probs=63.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecc-cc-ccccccch----HH-----HHHHHHHHHhccCCeEEEEcCCcc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SI-TSKWFGEG----EK-----YVKAVFSLASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~s-eL-~s~~iG~~----E~-----~I~~lF~~A~k~~PsIIfIDEID~ 1006 (1138)
++||.|+||+|||++|+++|+.++..|.+|.+. ++ -++..|.. +. .-..+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999998763 22 11111110 00 001122 25999999985
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC-----CCcHHHHhcC
Q 001150 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF-----DLDEAVIRRL 1062 (1138)
Q Consensus 1007 L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~-----~Ld~aLlrRF 1062 (1138)
. .+..+.++-.++.+--..+++....-..+++||||-|..+ .|++++++||
T Consensus 74 a-----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 A-----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred C-----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 5 3334445444444444445555555567899999999865 8889999999
No 219
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.78 E-value=3.5e-08 Score=119.82 Aligned_cols=195 Identities=21% Similarity=0.315 Sum_probs=116.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s 974 (1138)
.+|++++|.....+.+.+.+.. +.. ...+|||+|++||||+++|++|.+.. +.||+.++|..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A~-----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YAR-----SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688899998888888777752 111 12469999999999999999998775 68999999987632
Q ss_pred -----ccccchHHH--------HHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC------
Q 001150 975 -----KWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------ 1035 (1138)
Q Consensus 975 -----~~iG~~E~~--------I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~------ 1035 (1138)
..+|..++. -..+|+.|. .+.||||||+.| +. .+...|+..+....
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~-------~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PL-------PLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CH-------HHHHHHHHHHhcCcEEecCC
Confidence 222321111 122444443 489999999988 22 22223333332211
Q ss_pred -ccCCCCEEEEEecCCCC-------CCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHhhC----CCC-CcccHHH-
Q 001150 1036 -TKDTERILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLS-PDVDFDA- 1097 (1138)
Q Consensus 1036 -~~~~~~VLVIaTTN~p~-------~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~k~----~l~-~dvdl~~- 1097 (1138)
......+.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ +++.++.+. ++. .+..+..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 11123468888887642 3444555577 456777777777654 555555542 221 1111222
Q ss_pred ------HHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1098 ------IANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1098 ------LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
|....---+-++|+++++.++..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 33332233568899998888764
No 220
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.78 E-value=1.9e-07 Score=105.00 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEEecccc----
Q 001150 906 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI---- 972 (1138)
Q Consensus 906 le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---------g~~fi~Id~seL---- 972 (1138)
-..+.+.|.+++..|- ..+. .++||+|++|.|||++++.++... .+|++.+.++.-
T Consensus 42 A~~~L~~L~~Ll~~P~----------~~Rm-p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 42 AKEALDRLEELLEYPK----------RHRM-PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred HHHHHHHHHHHHhCCc----------ccCC-CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3445555555555432 1232 579999999999999999999766 367888887431
Q ss_pred ----------cccc--ccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCC
Q 001150 973 ----------TSKW--FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 1040 (1138)
Q Consensus 973 ----------~s~~--iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~ 1040 (1138)
...+ -......-.++....+.....+|+||||+.++.... ...+.+++. ++.+...-.-
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~----LK~L~NeL~i 181 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-----RKQREFLNA----LKFLGNELQI 181 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-----HHHHHHHHH----HHHHhhccCC
Confidence 0000 011122334456677788899999999999864321 122333333 3333333345
Q ss_pred CEEEEEecCCC--CCCcHHHHhcCCceEEecCC-CHHHHHHHHHHHHhhCCCC------CcccHHHHHHHcCCCcHHHHH
Q 001150 1041 RILVLAATNRP--FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVILAKEDLS------PDVDFDAIANMTDGYSGSDLK 1111 (1138)
Q Consensus 1041 ~VLVIaTTN~p--~~Ld~aLlrRFd~~I~v~lP-d~eeR~eIL~~ll~k~~l~------~dvdl~~LA~~teGySgaDL~ 1111 (1138)
+++.+||-... -.-|+.+.+|| ..+.++.. .-++...++..+-....+. ...-...|-.+++|..| +|.
T Consensus 182 piV~vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~ 259 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELS 259 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHH
Confidence 67777775443 34568899999 45555543 3345566776665554433 22224667778889777 799
Q ss_pred HHHHHHHHHHHHHHH
Q 001150 1112 NLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1112 ~L~~~Aa~~ai~eii 1126 (1138)
.|+..||..||+.--
T Consensus 260 ~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 260 RLLNAAAIAAIRSGE 274 (302)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998543
No 221
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.77 E-value=5.5e-08 Score=111.79 Aligned_cols=193 Identities=20% Similarity=0.199 Sum_probs=115.7
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc--
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 974 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s-- 974 (1138)
+++++|.....+.+.+.+.... +-...|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 5567777777777776665311 112469999999999999999998766 57999999987631
Q ss_pred ---ccccchHHH-------HHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc-------c
Q 001150 975 ---KWFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------K 1037 (1138)
Q Consensus 975 ---~~iG~~E~~-------I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~-------~ 1037 (1138)
.++|..... ....|..| ..++|||||||.|- ..+...|+..++.... .
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~------------~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC------------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 122211100 01123333 35899999999882 2233334444432211 1
Q ss_pred CCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHhh----CCCC--CcccHHHHH-
Q 001150 1038 DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS--PDVDFDAIA- 1099 (1138)
Q Consensus 1038 ~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~k----~~l~--~dvdl~~LA- 1099 (1138)
...++.||+||+.. ..+.+.+..|| ..+.+.+|...+|.+ +++.++.. .+.. ..++-+.+.
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 12357888888763 45667888898 346677777766653 45555433 2221 233434443
Q ss_pred --HHcCCCcHHHHHHHHHHHHHH
Q 001150 1100 --NMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1100 --~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
...---+.++|+++++.|+..
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHh
Confidence 333333568888888888764
No 222
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.76 E-value=2.5e-07 Score=101.62 Aligned_cols=182 Identities=19% Similarity=0.307 Sum_probs=129.1
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-C--CceEEEecccc--
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSSI-- 972 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-g--~~fi~Id~seL-- 972 (1138)
.+++.+.+.++....|+.+... .-..++|+|||+|+||-+.+.++.+++ | ..=.++...++
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 3566777888888877776541 112589999999999999999999998 3 22222221111
Q ss_pred -----------ccc--------cccchHH-HHHHHHHHHhcc---------CCeEEEEcCCcccccCCCCcchHHHHHHH
Q 001150 973 -----------TSK--------WFGEGEK-YVKAVFSLASKI---------APSVIFVDEVDSMLGRRENPGEHEAMRKM 1023 (1138)
Q Consensus 973 -----------~s~--------~iG~~E~-~I~~lF~~A~k~---------~PsIIfIDEID~L~~~r~~~~~~~al~~i 1023 (1138)
.+. -.|.-.. .+..+..+..+. ...|++|-|+|.| ....+.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 111 1122222 345555555443 3469999999998 34566777777
Q ss_pred HHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc
Q 001150 1024 KNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT 1102 (1138)
Q Consensus 1024 l~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~t 1102 (1138)
+.... ..+.+|..+|....+-+.+++|+ ..|.++.|+.++...++...+.++++. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 76652 56778888999999999999999 789999999999999999999999887 444467888888
Q ss_pred CCCcHHHH
Q 001150 1103 DGYSGSDL 1110 (1138)
Q Consensus 1103 eGySgaDL 1110 (1138)
+|.-.+.|
T Consensus 219 ~~nLRrAl 226 (351)
T KOG2035|consen 219 NRNLRRAL 226 (351)
T ss_pred cccHHHHH
Confidence 87655544
No 223
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.75 E-value=1.3e-07 Score=118.84 Aligned_cols=196 Identities=19% Similarity=0.295 Sum_probs=120.6
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s 974 (1138)
..|.+++|.....+.+.+.+.... .....|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 457788998888888777665311 112469999999999999999998876 67999999987532
Q ss_pred -----ccccchHH-------HHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------
Q 001150 975 -----KWFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------- 1035 (1138)
Q Consensus 975 -----~~iG~~E~-------~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~------- 1035 (1138)
.++|.... .....|+.+ ..++||||||+.+- ..+...|+..++...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~------------~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP------------LELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC------------HHHHHHHHHHHHhCCEEeCCCC
Confidence 22232110 011234433 34899999999872 222333333332211
Q ss_pred ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHhh----CCCC-Cccc---HH
Q 001150 1036 TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS-PDVD---FD 1096 (1138)
Q Consensus 1036 ~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~k----~~l~-~dvd---l~ 1096 (1138)
.....++.+|++|+.. ..+...+..|+ ..+.+.+|...+|.+ +++.++.+ .+.. ..+. +.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 1112467899998763 24555666677 567788888888765 44555443 2221 1123 34
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1097 AIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1097 ~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
.|....--.+.++|+++++.|+..+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 4444333346689999999888654
No 224
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.73 E-value=6.4e-08 Score=117.81 Aligned_cols=196 Identities=23% Similarity=0.312 Sum_probs=117.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~ 973 (1138)
..+|++++|.....+.+.+.+... .. -...|||+|++||||+++|+++.... +.||+.++|..+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------AM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------hC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 457889999887776666655421 11 11359999999999999999987665 5799999998763
Q ss_pred cc-----cccchHH-------HHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC--c---
Q 001150 974 SK-----WFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--T--- 1036 (1138)
Q Consensus 974 s~-----~iG~~E~-------~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~--~--- 1036 (1138)
.. .+|...+ ....+|+.|. .+.||||||+.|- . .+...|+..+.... .
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----~-------~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----P-------RMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----H-------HHHHHHHHHHhcCCcccCCC
Confidence 21 2221110 0112344443 4899999999882 1 22223333332211 0
Q ss_pred --cCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHh----hCCCC-CcccHHHH
Q 001150 1037 --KDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA----KEDLS-PDVDFDAI 1098 (1138)
Q Consensus 1037 --~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~----k~~l~-~dvdl~~L 1098 (1138)
.....+.||+||+.. ..+.+.+..|+ .++.+.+|...+|.+ +++.++. +.+.. ..+..+.+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 112357888888763 24667788888 457788888777763 3334433 33321 23444444
Q ss_pred HHHcC---CCcHHHHHHHHHHHHHH
Q 001150 1099 ANMTD---GYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1099 A~~te---GySgaDL~~L~~~Aa~~ 1120 (1138)
..+.. --+.++|++++..|+..
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 44333 22557888888888764
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=4.1e-07 Score=104.35 Aligned_cols=168 Identities=11% Similarity=0.104 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEE----------------Eec
Q 001150 906 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----------------ISM 969 (1138)
Q Consensus 906 le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~----------------Id~ 969 (1138)
+....+.|...+.. .+-++.+||+||+|+||+++|+++|+.+-+.-.. -+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 44555666665542 2334689999999999999999999998431100 001
Q ss_pred cccccc--ccc--chHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCC
Q 001150 970 SSITSK--WFG--EGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1041 (1138)
Q Consensus 970 seL~s~--~iG--~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~ 1041 (1138)
+++.-- ..| -.-..++.+...+. .....|++||++|.|- ....|.||..++. ++.+
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE----Pp~~ 137 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE----PRPN 137 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----CCCC
Confidence 111100 001 11234555544443 3345799999999882 2344566666655 3467
Q ss_pred EEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 001150 1042 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 1107 (1138)
Q Consensus 1042 VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySg 1107 (1138)
+++|.+|+.++.|-+.+++|+ ..+.|..|+.++..+.+..... ........++.++.|-.+
T Consensus 138 ~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 138 TYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred eEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 899999999999999999999 7899999999988877765431 122234555566666444
No 226
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.2e-08 Score=109.00 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcC--CcchhhHHHHHHhcC-------CCcEEEEeecccCCCccccCCCCCc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--NSDSYSTFKSRLEKL-------PDKVIVIGSHTHTDNRKEKSHPGGL 712 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~--~~~~~~~lk~~L~~l-------~g~VvvIGstt~~d~~d~k~~~~~~ 712 (1138)
.|..||+-+++ ...-++|||||.|-+++. ...+.....+.|..+ +-.||+.=+||++.+
T Consensus 430 kiH~lFDWakk--S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd---------- 497 (630)
T KOG0742|consen 430 KIHKLFDWAKK--SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---------- 497 (630)
T ss_pred HHHHHHHHHhh--cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc----------
Confidence 47778887776 256799999999999983 334444555555333 457888888898863
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 713 ~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
.|.+++-||+..|+|+||.+|+|.++|+..+++
T Consensus 498 ---------------------------------lDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 498 ---------------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred ---------------------------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 588999999999999999999999999977765
No 227
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.70 E-value=1.9e-07 Score=116.46 Aligned_cols=195 Identities=16% Similarity=0.223 Sum_probs=117.8
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc-
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 973 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~- 973 (1138)
.+|++++|.....+.+.+.+.... +....|||+|++||||+++|++|.+.. +.||+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 467888888777777666654211 112359999999999999999999876 5799999998762
Q ss_pred ----cccccchHH----HHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-------C
Q 001150 974 ----SKWFGEGEK----YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------D 1038 (1138)
Q Consensus 974 ----s~~iG~~E~----~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-------~ 1038 (1138)
+.++|.... .....|+.| ..++||||||+.|- ..+...|+..++..... .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~------------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS------------PELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC------------HHHHHHHHHHHhcCcEEeCCCCceE
Confidence 223332100 000123322 45899999999882 22233333333322111 1
Q ss_pred CCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHHHH----HHHHHHhhC----CCCCccc---HHHHHH
Q 001150 1039 TERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLSPDVD---FDAIAN 1100 (1138)
Q Consensus 1039 ~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR~e----IL~~ll~k~----~l~~dvd---l~~LA~ 1100 (1138)
...+.||+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+. +....+. +..|..
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 1257889988863 34555666677 567888888877753 445554432 2112233 344444
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 001150 1101 MTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1101 ~teGySgaDL~~L~~~Aa~~ 1120 (1138)
..-.-+.++|+++++.|+..
T Consensus 534 y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCCChHHHHHHHHHHHHHh
Confidence 33233668888988887764
No 228
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.68 E-value=8.5e-07 Score=98.14 Aligned_cols=173 Identities=15% Similarity=0.208 Sum_probs=102.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CceEE--Eeccc-----c---ccccccch------HHHHHHH----HHHHhccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG-ANFIN--ISMSS-----I---TSKWFGEG------EKYVKAV----FSLASKIA 995 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg-~~fi~--Id~se-----L---~s~~iG~~------E~~I~~l----F~~A~k~~ 995 (1138)
..++|+||+|+|||++++.++..+. ..++. +.... + +....|.. ......+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999985 23222 11111 1 00111111 1111222 22233556
Q ss_pred CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC--CCCC----cHHHHhcCCceEEec
Q 001150 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR--PFDL----DEAVIRRLPRRLMVN 1069 (1138)
Q Consensus 996 PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~--p~~L----d~aLlrRFd~~I~v~ 1069 (1138)
+.||+|||++.+- ..... .+..+. + ........+.|+.+... .+.+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~--------~~~~~-~l~~l~---~-~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PELLE-ELRMLS---N-FQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHHHH-HHHHHh---C-cccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999762 11111 111221 1 11111223333444322 1121 134667888889999
Q ss_pred CCCHHHHHHHHHHHHhhCCC-----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1070 LPDAPNRAKILQVILAKEDL-----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1070 lPd~eeR~eIL~~ll~k~~l-----~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
..+.++..+++...+...+. -.+..++.|++.+.|+.. .|..+|..|...+..
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFL 248 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHH
Confidence 99999999999998875432 234568889999999765 599999998877654
No 229
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.66 E-value=2.1e-07 Score=112.45 Aligned_cols=146 Identities=25% Similarity=0.310 Sum_probs=88.4
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC----------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 961 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---------------- 961 (1138)
..|.|+.|...+++.+.-.+. ...+++|.||||+|||++|++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478899999888776654432 125799999999999999999987541
Q ss_pred ------------CceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 962 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 962 ------------~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
.||....++......+|.....-...+..| ..++||||||+.+- ..+++.|+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~------------~~~~~~L~~ 317 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK------------RSVLDALRE 317 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC------------HHHHHHHHH
Confidence 122222221111111121100111123333 34899999999762 233334444
Q ss_pred HhcCCC---------ccCCCCEEEEEecCCC-----C------------------CCcHHHHhcCCceEEecCCCHH
Q 001150 1030 NWDGLR---------TKDTERILVLAATNRP-----F------------------DLDEAVIRRLPRRLMVNLPDAP 1074 (1138)
Q Consensus 1030 ~Ldgl~---------~~~~~~VLVIaTTN~p-----~------------------~Ld~aLlrRFd~~I~v~lPd~e 1074 (1138)
.|+... .....++.+|+++|.. . .+...+++|||..+.++.++.+
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 443221 1123578999999852 1 4778999999999998877654
No 230
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=7.7e-07 Score=102.72 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=101.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCce----------------EEEeccccccccc-c----chHHHHHHHHHHH-
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANF----------------INISMSSITSKWF-G----EGEKYVKAVFSLA- 991 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~f----------------i~Id~seL~s~~i-G----~~E~~I~~lF~~A- 991 (1138)
+-+..+||+||+|+||+++|.++|..+-+.- ..-+.+++.--.. + -.-..++.+...+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 3447899999999999999999999983310 0001122211000 0 0122344444443
Q ss_pred ---hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEe
Q 001150 992 ---SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV 1068 (1138)
Q Consensus 992 ---~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v 1068 (1138)
......|++||++|.|- ....|.||..++. ++.++++|.+|+.++.|-+.+++|+ ..+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RLHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-ccccC
Confidence 33456799999999882 2344566666655 3567899999999999999999999 57899
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHH
Q 001150 1069 NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1110 (1138)
Q Consensus 1069 ~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL 1110 (1138)
+.|+.++..+.+... .++. ..+...++.++.|-.+..+
T Consensus 165 ~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 999988877766532 2332 2335566777777555433
No 231
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.65 E-value=5.4e-08 Score=118.18 Aligned_cols=175 Identities=22% Similarity=0.256 Sum_probs=99.9
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc-eEEE---eccccccccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINI---SMSSITSKWF 977 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-fi~I---d~seL~s~~i 977 (1138)
+|.|++.++..|.-.+..-... ....+...+...+|||+|+||+|||++|+++++.+... |+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~--~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK--NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc--ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5778999888776665432110 01111112223479999999999999999999987533 3221 2212211111
Q ss_pred cch---HHHH-HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHh--cCCCccCCCCEEEEEecCCC
Q 001150 978 GEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 978 G~~---E~~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~L--dgl~~~~~~~VLVIaTTN~p 1051 (1138)
... +..+ ...+. ....++++|||++.+- ...+..+..++++-...+ .|....-+.++.||||+|..
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~-----~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKMD-----DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhCC-----HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 110 0000 00111 1234799999999872 112222222111100001 22222334678999999975
Q ss_pred C-------------CCcHHHHhcCCceEEe-cCCCHHHHHHHHHHHHhh
Q 001150 1052 F-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1052 ~-------------~Ld~aLlrRFd~~I~v-~lPd~eeR~eIL~~ll~k 1086 (1138)
+ .|++++++|||.++.+ +.|+.+...+|+++++..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 2 6899999999887664 789999999999887643
No 232
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.65 E-value=2.4e-07 Score=107.48 Aligned_cols=169 Identities=22% Similarity=0.308 Sum_probs=104.1
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-CceEEEec-------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------- 969 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-~~fi~Id~------- 969 (1138)
..|.-+.|++..+..|.-... .....++||.|+.|+|||+++|+||..|. ...+. .|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 346678899888877654332 22346899999999999999999999882 22111 11
Q ss_pred -c------------------------ccccccccchHH-HH-----HHHHH---------HHhccCCeEEEEcCCccccc
Q 001150 970 -S------------------------SITSKWFGEGEK-YV-----KAVFS---------LASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 970 -s------------------------eL~s~~iG~~E~-~I-----~~lF~---------~A~k~~PsIIfIDEID~L~~ 1009 (1138)
+ .++..-.|.++. .+ .++.+ ...+...+||||||+..|-
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~- 157 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD- 157 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc-
Confidence 0 011111122222 11 11111 0011133799999998772
Q ss_pred CCCCcchHHHHHHHHHH--HHHHhcCCCccCCCCEEEEEecCCC-CCCcHHHHhcCCceEEecCC-CHHHHHHHHHHHHh
Q 001150 1010 RRENPGEHEAMRKMKNE--FMVNWDGLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVILA 1085 (1138)
Q Consensus 1010 ~r~~~~~~~al~~il~~--LL~~Ldgl~~~~~~~VLVIaTTN~p-~~Ld~aLlrRFd~~I~v~lP-d~eeR~eIL~~ll~ 1085 (1138)
..-...+-.++.+ -....+|.......++++|||+|.. ..|.+.|+.||...+.+..| +.++|.+|++..+.
T Consensus 158 ----d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 158 ----DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ----HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 1111111111111 1123455555556789999999975 58999999999999998765 78899999988776
Q ss_pred h
Q 001150 1086 K 1086 (1138)
Q Consensus 1086 k 1086 (1138)
.
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 5
No 233
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=7.9e-07 Score=101.84 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCce-------------EEEecccc
Q 001150 906 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------INISMSSI 972 (1138)
Q Consensus 906 le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~f-------------i~Id~seL 972 (1138)
+....+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- ..-+.+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 45556666665542 23336799999999999999999998883310 00011121
Q ss_pred ccc-----ccc------chHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc
Q 001150 973 TSK-----WFG------EGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1037 (1138)
Q Consensus 973 ~s~-----~iG------~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~ 1037 (1138)
.-- ..| -.-..|+++...+... ...|++||++|.|- ....|.||..++.-
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP--- 140 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEP--- 140 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCC---
Confidence 100 001 0123455555555443 34699999999882 23345566555553
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHH
Q 001150 1038 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLK 1111 (1138)
Q Consensus 1038 ~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~ 1111 (1138)
..++++|.+|+.++.|-+.+++|+ ..+.|..|+.++..+.+.. .++. ..+...++.++.|-.+..+.
T Consensus 141 -p~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~~-~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 141 -SPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGVS-ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred -CCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCCC-hHHHHHHHHHcCCCHHHHHH
Confidence 456788888999999999999999 7889999999877766653 2332 23355677777776554443
No 234
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.64 E-value=3.6e-07 Score=112.96 Aligned_cols=51 Identities=33% Similarity=0.480 Sum_probs=42.7
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~ 963 (1138)
..-++++.|+++.++.++..+.. + .+++|+||||||||++|+++|+.++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~--------------~--~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ--------------K--RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc--------------C--CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35678899999999988887752 1 379999999999999999999999544
No 235
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=6.2e-07 Score=110.68 Aligned_cols=192 Identities=14% Similarity=0.174 Sum_probs=112.1
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEE-eccc---c
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMSS---I 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~I-d~se---L 972 (1138)
..+++|+.++++..+.|+.++..... ...+...++|+||||+|||++++.+|++++..+++. +... .
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~---------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL---------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc---------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 35799999999999988888753211 022334599999999999999999999998776552 2110 0
Q ss_pred c---------cccc---cchHHHHHHHHHHHh----------ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 001150 973 T---------SKWF---GEGEKYVKAVFSLAS----------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1138)
Q Consensus 973 ~---------s~~i---G~~E~~I~~lF~~A~----------k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~ 1030 (1138)
. ...+ ...-..+..++..+. .....|||||||+.++.. ...+...++..+ .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----~~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----DTRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----hHHHHHHHHHHH--h
Confidence 0 0000 111223344444443 124679999999987522 112333332200 1
Q ss_pred hcCCCccCCCCEEEEEecCCCC--------------CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCC----
Q 001150 1031 WDGLRTKDTERILVLAATNRPF--------------DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS---- 1090 (1138)
Q Consensus 1031 Ldgl~~~~~~~VLVIaTTN~p~--------------~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~---- 1090 (1138)
.+ ...-++++| +|..+. .|.+++++ |. .+|.|+..+.....+.|+.++..+...
T Consensus 224 ~e----~~~~pLI~I-~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 224 VS----IGRCPLVFI-ITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hc----CCCceEEEE-ecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 11 111233333 332221 13478886 45 578999999999999999988765321
Q ss_pred ----CcccHHHHHHHcCCCcHHHH
Q 001150 1091 ----PDVDFDAIANMTDGYSGSDL 1110 (1138)
Q Consensus 1091 ----~dvdl~~LA~~teGySgaDL 1110 (1138)
....+..|+....|--...|
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAI 321 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAI 321 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHH
Confidence 12346677776666444433
No 236
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.62 E-value=2.8e-07 Score=95.72 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc---------------------
Q 001150 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 963 (1138)
Q Consensus 905 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~--------------------- 963 (1138)
|++.+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 567778888887753 2334679999999999999999999988221
Q ss_pred --eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc
Q 001150 964 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1037 (1138)
Q Consensus 964 --fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~ 1037 (1138)
++.+...... .. -.-..++.+...+... ...|++|||+|.|- ....|.|+..|+..
T Consensus 68 ~d~~~~~~~~~~-~~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKK-KS--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSS-SS--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEeccccc-ch--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 2222221110 00 1224455555555433 46799999999882 34455666666553
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhcCCceEEecCC
Q 001150 1038 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1038 ~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
+.++++|.+|+.++.|-+.+++|+ ..+.|...
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 467999999999999999999999 67777643
No 237
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.60 E-value=3.5e-07 Score=112.77 Aligned_cols=137 Identities=19% Similarity=0.323 Sum_probs=90.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CceEEEeccccccccccchH--HHHH-H--HHH--HHhccCCeEEEEcCCcc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-A--VFS--LASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~seL~s~~iG~~E--~~I~-~--lF~--~A~k~~PsIIfIDEID~ 1006 (1138)
..+|||.|+||||||++|++++..+. .+|+++.........+|... ..+. . .|. ...+...+|||||||+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 46899999999999999999999885 46888875433333444321 0000 0 000 00112336999999998
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhc---------CCCccCCCCEEEEEecCCCC---CCcHHHHhcCCceEEec-CCCH
Q 001150 1007 MLGRRENPGEHEAMRKMKNEFMVNWD---------GLRTKDTERILVLAATNRPF---DLDEAVIRRLPRRLMVN-LPDA 1073 (1138)
Q Consensus 1007 L~~~r~~~~~~~al~~il~~LL~~Ld---------gl~~~~~~~VLVIaTTN~p~---~Ld~aLlrRFd~~I~v~-lPd~ 1073 (1138)
+- ..+.+.|+..|+ +.......++.||+|+|..+ .|.++++.||..++.+. .|+.
T Consensus 96 l~------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~ 163 (589)
T TIGR02031 96 LD------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQ 163 (589)
T ss_pred CC------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCH
Confidence 72 223333444443 22222335789999999765 79999999999887764 5678
Q ss_pred HHHHHHHHHHH
Q 001150 1074 PNRAKILQVIL 1084 (1138)
Q Consensus 1074 eeR~eIL~~ll 1084 (1138)
++|.+|++..+
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 88999998865
No 238
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=2e-06 Score=98.56 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc---------------------
Q 001150 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 963 (1138)
Q Consensus 905 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~--------------------- 963 (1138)
-+....+.|...+.. .+-+..+||+||.|+||+.+|+++|+.+-+.
T Consensus 7 Wl~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~H 73 (319)
T PRK06090 7 WLVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNH 73 (319)
T ss_pred cHHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCC
Confidence 345666666666542 2344689999999999999999999988321
Q ss_pred --eEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc
Q 001150 964 --FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1037 (1138)
Q Consensus 964 --fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~ 1037 (1138)
|+.+.... .++.+ .-..++.+...+.. ....|++||++|.|- ....|.||..++.
T Consensus 74 PD~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 134 (319)
T PRK06090 74 PDLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE---- 134 (319)
T ss_pred CCEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----
Confidence 22221110 01111 12234555444433 345799999999882 2344566666655
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHH
Q 001150 1038 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1038 ~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySga 1108 (1138)
++.++++|.+|+.++.|-+.+++|+ ..+.|+.|+.++..+.+.. .++. ....++..+.|-.+.
T Consensus 135 Pp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~----~~~~---~~~~~l~l~~G~p~~ 197 (319)
T PRK06090 135 PAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG----QGIT---VPAYALKLNMGSPLK 197 (319)
T ss_pred CCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH----cCCc---hHHHHHHHcCCCHHH
Confidence 3467899999999999999999999 7899999998887776653 2322 234556666664443
No 239
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=8.6e-07 Score=102.40 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=99.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCceEE-----------------Eecccccccc--------------------
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-----------------ISMSSITSKW-------------------- 976 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~fi~-----------------Id~seL~s~~-------------------- 976 (1138)
+-++.+||+||+|+||+++|+++|+.+.+.--. -+.+++.--.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 344789999999999999999999998542200 0001110000
Q ss_pred --cc---------chHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCC
Q 001150 977 --FG---------EGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1041 (1138)
Q Consensus 977 --iG---------~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~ 1041 (1138)
.| -.-..++.+...+.. ....|++||++|.|- ....|.||..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 00 011234555444432 245699999999882 3344666666664 3567
Q ss_pred EEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHH
Q 001150 1042 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109 (1138)
Q Consensus 1042 VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaD 1109 (1138)
+++|.+|+.++.|.+.+++|+ ..+.|+.|+.++..+.+... ++.. ...++..+.|-.+..
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~----~~~~---~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ----GVAD---ADALLAEAGGAPLAA 222 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc----CCCh---HHHHHHHcCCCHHHH
Confidence 899999999999999999999 78999999999888887653 2221 234555666644433
No 240
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.58 E-value=1.7e-07 Score=111.49 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=84.9
Q ss_pred ccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--ceEEEeccc-cccccccc
Q 001150 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSS-ITSKWFGE 979 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~--~fi~Id~se-L~s~~iG~ 979 (1138)
+.|.+++.+.+...+.. ..++||+||||||||++|++|+..++. +|..+.+.- .....+|.
T Consensus 22 i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 45666666665554431 147999999999999999999998742 444433321 11223332
Q ss_pred hH-HHH--HHHHHHHhcc---CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhc-------CCCccCCCCEEEEE
Q 001150 980 GE-KYV--KAVFSLASKI---APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRTKDTERILVLA 1046 (1138)
Q Consensus 980 ~E-~~I--~~lF~~A~k~---~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ld-------gl~~~~~~~VLVIa 1046 (1138)
.. ... ..-|...... ...|||+|||.++ + ..+.+.|+..|. +-...-+.++++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----s-------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----G-------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----C-------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 10 000 1122211111 2249999999855 2 333444444442 21122223455555
Q ss_pred ecCCCC---CCcHHHHhcCCceEEecCCC-HHHHHHHHHHH
Q 001150 1047 ATNRPF---DLDEAVIRRLPRRLMVNLPD-APNRAKILQVI 1083 (1138)
Q Consensus 1047 TTN~p~---~Ld~aLlrRFd~~I~v~lPd-~eeR~eIL~~l 1083 (1138)
| |... ...+++..||-..+.++.|+ .++..+++...
T Consensus 154 T-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 154 S-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred C-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 5 6422 34468999997788888886 45657777653
No 241
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.57 E-value=9.2e-08 Score=100.00 Aligned_cols=111 Identities=21% Similarity=0.411 Sum_probs=67.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc-----cccchHH-------HHHHHHHHHhccCCeEEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~-----~iG~~E~-------~I~~lF~~A~k~~PsIIfI 1001 (1138)
.+|||+|++||||+.+|++|.+.. +.||+.++|+.+... ++|.... ....+|+.|.. ++|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEee
Confidence 579999999999999999999876 579999999876322 2332111 11245666655 89999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcC
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRL 1062 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRF 1062 (1138)
|||+.|- ..+...|+..|+... .....++.||+||+.. ..+.+.+..|+
T Consensus 100 d~I~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 100 DEIEDLP------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp ETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHH
T ss_pred cchhhhH------------HHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHh
Confidence 9999882 223333444443211 1112478999999863 24555555555
No 242
>PRK08116 hypothetical protein; Validated
Probab=98.54 E-value=3.7e-07 Score=102.31 Aligned_cols=128 Identities=18% Similarity=0.276 Sum_probs=73.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccc----hHHHHHHHHHHHhccCCeEEEEcCCccccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE----GEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~----~E~~I~~lF~~A~k~~PsIIfIDEID~L~~ 1009 (1138)
.+++|+|++|+|||+||.++|+++ +.+++.++..+++..+... .......++.... ...+|+|||+...-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-
Confidence 579999999999999999999997 7888889888765543211 1111222333222 34699999996321
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC-CC----CcHHHHhcC---CceEEecCCCHHHHHHHHH
Q 001150 1010 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-FD----LDEAVIRRL---PRRLMVNLPDAPNRAKILQ 1081 (1138)
Q Consensus 1010 ~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p-~~----Ld~aLlrRF---d~~I~v~lPd~eeR~eIL~ 1081 (1138)
..... ...|...++.... ....+|.|||.+ .. ++..+.+|+ ...|.+.-++. |.++.+
T Consensus 192 --~t~~~-------~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 192 --DTEWA-------REKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred --CCHHH-------HHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHH
Confidence 11111 1222223332211 123466677754 33 456777774 23455555553 444443
No 243
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.53 E-value=1.2e-07 Score=79.18 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=44.6
Q ss_pred EEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEeC-CCceEEcCeec
Q 001150 147 FTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIG-SKGLQVNGKNL 199 (1138)
Q Consensus 147 ~tvGr~~-~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s-~nGt~VNg~~~ 199 (1138)
++|||.. .||+.|.++.+|..||+|.....+ .++|+|++ +|||||||++|
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~---~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGG---RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCCC---eEEEEECCCCCCeeECCEEC
Confidence 5899999 999999999999999999875433 57999999 89999999875
No 244
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.51 E-value=5.8e-07 Score=106.97 Aligned_cols=169 Identities=18% Similarity=0.267 Sum_probs=102.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccc-----ccchHHH----H---HHHHHHHhccCCeEEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY----V---KAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~-----iG~~E~~----I---~~lF~~A~k~~PsIIfI 1001 (1138)
..++|+|++||||+++|+++.... +.+|+.++|..+...+ +|..... . ...|. ....++|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEE
Confidence 469999999999999999998876 5799999998763221 1111000 0 00111 234589999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEE
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1067 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1067 (1138)
|||+.|- ..+...|+..+.... ......+.+|+||+.. ..+.+.+..|+ ..+.
T Consensus 240 ~~i~~l~------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~ 306 (445)
T TIGR02915 240 DEIGDLP------------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEIS 306 (445)
T ss_pred echhhCC------------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccce
Confidence 9999882 222233333332211 1112367888888764 45667777788 5677
Q ss_pred ecCCCHHHHHH----HHHHHHhhC----CCC-Cccc---HHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1068 VNLPDAPNRAK----ILQVILAKE----DLS-PDVD---FDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1068 v~lPd~eeR~e----IL~~ll~k~----~l~-~dvd---l~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
+.+|...+|.+ +++.++.+. +.. ..+. +..|....--.+.++|+++++.|+..+
T Consensus 307 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 307 ITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred ecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 88888887765 444444432 211 2233 344444433346689999999888654
No 245
>PRK12377 putative replication protein; Provisional
Probab=98.50 E-value=9.5e-07 Score=97.90 Aligned_cols=111 Identities=20% Similarity=0.295 Sum_probs=67.4
Q ss_pred HHHHhcCcCCCCCCCcccccccc----hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHH
Q 001150 883 EKRLLADVIPPSDIGVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 883 e~~ll~~ii~~~~~~vsfdDI~G----le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~ 958 (1138)
+..+....+++.....+|+++.. ...+......++.. |.. ...+++|+||||||||+||.|||+
T Consensus 56 ~~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 56 EKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred HHHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHH
Confidence 34344445666666778888753 22233333333321 111 125899999999999999999999
Q ss_pred Hh---CCceEEEeccccccccccchH--HHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 959 EA---GANFINISMSSITSKWFGEGE--KYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 959 el---g~~fi~Id~seL~s~~iG~~E--~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+ +..++.++..++......... .....++... ....+|+||||...
T Consensus 124 ~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 124 RLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 98 677888888776553221100 0111233322 35689999999754
No 246
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.49 E-value=9.4e-07 Score=98.37 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=59.4
Q ss_pred CCeEEEEcchhhhhcCC-----cchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCC
Q 001150 657 CPFILFMKDAEKSIAGN-----SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPD 731 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~-----~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~ 731 (1138)
.+.||||||+|.+..+. .+..+.|...++..++++++|++.+..+. ++
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~-~~-------------------------- 157 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM-DY-------------------------- 157 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh-HH--------------------------
Confidence 35699999999976422 23445555666777788888877654331 00
Q ss_pred ccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 732 SFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 732 ~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
| ..++.+|..||+..|.++.++.+++.+||+..+..
T Consensus 158 -~----------~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 158 -F----------LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred -H----------HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 1 12567899999989999999999999999976643
No 247
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.47 E-value=4.6e-07 Score=114.10 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=105.0
Q ss_pred HHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhh---cC----CCCCCCceEEEECCCCCCHHHHH
Q 001150 881 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 881 e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~---~~----~~~rP~~gILL~GPPGTGKT~LA 953 (1138)
++...+...+.| .|.|++.+|+.+.-.+..-........ ++ ...+...+|||+|+||||||.+|
T Consensus 439 ~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLA 509 (915)
T PTZ00111 439 MIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLL 509 (915)
T ss_pred HHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHH
Confidence 344445555555 578999999887655543221100000 00 11233357999999999999999
Q ss_pred HHHHHHhC-------CceEEEeccccccccccc--hHHHH-HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHH
Q 001150 954 KAVATEAG-------ANFINISMSSITSKWFGE--GEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM 1023 (1138)
Q Consensus 954 rALA~elg-------~~fi~Id~seL~s~~iG~--~E~~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~i 1023 (1138)
+++++... .++..+.+..... ..+. .+..+ ...+.. ...++++||||+.+- .. .+..
T Consensus 510 r~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms-----~~----~Q~a 576 (915)
T PTZ00111 510 HYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCH-----NE----SRLS 576 (915)
T ss_pred HHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCC-----HH----HHHH
Confidence 99998652 3444444333211 0000 00000 001112 234799999999882 11 1222
Q ss_pred HHHHHHH----h--cCCCccCCCCEEEEEecCCC-------------CCCcHHHHhcCCceEE-ecCCCHHHHHHHHHHH
Q 001150 1024 KNEFMVN----W--DGLRTKDTERILVLAATNRP-------------FDLDEAVIRRLPRRLM-VNLPDAPNRAKILQVI 1083 (1138)
Q Consensus 1024 l~~LL~~----L--dgl~~~~~~~VLVIaTTN~p-------------~~Ld~aLlrRFd~~I~-v~lPd~eeR~eIL~~l 1083 (1138)
+.++|.. + .|+...-+.++.||||+|.. -.|++.+++|||.++. ++.|+.+.-..|.+++
T Consensus 577 LlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 577 LYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred HHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHH
Confidence 2222211 1 13333345789999999974 2677999999988765 4778888777777776
Q ss_pred Hh
Q 001150 1084 LA 1085 (1138)
Q Consensus 1084 l~ 1085 (1138)
+.
T Consensus 657 ~~ 658 (915)
T PTZ00111 657 AK 658 (915)
T ss_pred HH
Confidence 64
No 248
>CHL00181 cbbX CbbX; Provisional
Probab=98.45 E-value=1.5e-06 Score=98.29 Aligned_cols=84 Identities=21% Similarity=0.179 Sum_probs=61.2
Q ss_pred CCeEEEEcchhhhhcC------CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCC
Q 001150 657 CPFILFMKDAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 730 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~------~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~ 730 (1138)
.+-||||||++.+... ..+..+.|...|+...++++||++++..+ . +.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-~----------------------~~--- 175 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-M----------------------DK--- 175 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-H----------------------HH---
Confidence 3469999999986532 23444555555666678899999976432 0 10
Q ss_pred CccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 731 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 731 ~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
| ...+.+|.+||+..|.|+.++.+++.+||+..+.+
T Consensus 176 --~----------~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 176 --F----------YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred --H----------HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 0 11467899999999999999999999999988766
No 249
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=5.6e-06 Score=96.78 Aligned_cols=189 Identities=22% Similarity=0.250 Sum_probs=124.6
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEecccccc--
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS-- 974 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s-- 974 (1138)
.+.|-+..+..+++++..++.. +..+++.+.|.||+|||.+...+...+ ....++++|.++..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5678888888888888876542 223689999999999999888776665 23457788765411
Q ss_pred ----cc--------ccchHH-HHHHHHHH-Hhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCC
Q 001150 975 ----KW--------FGEGEK-YVKAVFSL-ASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1039 (1138)
Q Consensus 975 ----~~--------iG~~E~-~I~~lF~~-A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~ 1039 (1138)
+. .+.... .....|.. .... .+-||++||+|.|+.++. .+ +..+..++.-.+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~v----Ly~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TV----LYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ce----eeeehhcccCCc
Confidence 11 111111 11222222 2222 367999999999973321 12 222223333346
Q ss_pred CCEEEEEecCCCCCCcHHHHh---c---CCceEEecCCCHHHHHHHHHHHHhhCCCCCcc--cHHHHHHHcCCCcHHHHH
Q 001150 1040 ERILVLAATNRPFDLDEAVIR---R---LPRRLMVNLPDAPNRAKILQVILAKEDLSPDV--DFDAIANMTDGYSGSDLK 1111 (1138)
Q Consensus 1040 ~~VLVIaTTN~p~~Ld~aLlr---R---Fd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dv--dl~~LA~~teGySgaDL~ 1111 (1138)
.++++||.+|..+.-|..+.+ | -+..+.|++++.++..+||+..+......... .++.+|+...|.+| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999998765544433 2 25679999999999999999999887655333 47788888888887 676
Q ss_pred HHH
Q 001150 1112 NLC 1114 (1138)
Q Consensus 1112 ~L~ 1114 (1138)
.++
T Consensus 367 kaL 369 (529)
T KOG2227|consen 367 KAL 369 (529)
T ss_pred HHH
Confidence 654
No 250
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.43 E-value=2.4e-06 Score=103.65 Aligned_cols=176 Identities=21% Similarity=0.265 Sum_probs=117.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh----------CCceEEEecccccc----------ccccchHH------HHHHHHH-H
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS----------KWFGEGEK------YVKAVFS-L 990 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el----------g~~fi~Id~seL~s----------~~iG~~E~------~I~~lF~-~ 990 (1138)
.+.+.|-||||||.++..+-.+| .|.|+.|++-.+.+ .+.|+... .+..-|. .
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68999999999999999998866 58889998755432 12222111 1122222 1
Q ss_pred HhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHH----HhcCC-ce
Q 001150 991 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAV----IRRLP-RR 1065 (1138)
Q Consensus 991 A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aL----lrRFd-~~ 1065 (1138)
..+..++||+|||+|.|+.+. +..|+.+-..+...+.+++||+.+|..+....-+ -+|++ .+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 133467899999999997543 3345555566666788999999998865443333 33654 46
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHH
Q 001150 1066 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG--SDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1066 I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySg--aDL~~L~~~Aa~~ai~eii 1126 (1138)
+.|...+.++..+|+...+.........-++-+|+.....+| +-...+|++|+..+-.+..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV 633 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc
Confidence 889999999999999999887643333334555554443443 3344678888877766654
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.43 E-value=3.1e-06 Score=93.67 Aligned_cols=111 Identities=21% Similarity=0.301 Sum_probs=68.3
Q ss_pred HHHHhcCcCCCCCCCcccccccchH-H---HHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHH
Q 001150 883 EKRLLADVIPPSDIGVTFDDIGALE-N---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 883 e~~ll~~ii~~~~~~vsfdDI~Gle-~---vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~ 958 (1138)
++.+....+++.....+|+++.... . +...+.+++.. +. ....+++|+|+||||||+||.+||+
T Consensus 54 ~~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 54 QRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred HHHHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHH
Confidence 3333444456555667888875332 2 23333333321 11 1124899999999999999999999
Q ss_pred Hh---CCceEEEeccccccccccc---hHHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 959 EA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 959 el---g~~fi~Id~seL~s~~iG~---~E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
++ +..++.++..++....... .......++.... ...+|+|||++..
T Consensus 122 ~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 122 ELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 98 7888888888776533221 1112223444333 4689999999865
No 252
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.40 E-value=5.2e-06 Score=96.00 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=47.0
Q ss_pred cc-cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------ceEEEec
Q 001150 900 FD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 969 (1138)
Q Consensus 900 fd-DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-------~fi~Id~ 969 (1138)
|+ ++.|+++.+..|.+.+.... .+ ...+.+.++|+||||+|||+||++||+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a-------~g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA-------QG-LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH-------hc-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 45 79999999998888775322 11 1222356899999999999999999999955 7777755
No 253
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.40 E-value=2e-06 Score=103.15 Aligned_cols=169 Identities=21% Similarity=0.307 Sum_probs=102.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc-----cccchHHHH-------HHHHHHHhccCCeEEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKYV-------KAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~-----~iG~~E~~I-------~~lF~~A~k~~PsIIfI 1001 (1138)
..+||+|++||||+++|+++.... +.+|+.++|..+... .+|...+.. ...|. ....+.|||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l 238 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE---QADGGTLFL 238 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEE
Confidence 469999999999999999999887 579999999876322 112111000 00122 223579999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc-------cCCCCEEEEEecCCC-------CCCcHHHHhcCCceEE
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1067 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~-------~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1067 (1138)
||||.|- ..+...|+..++.... .....+.+|+||+.. ..+.+.+..|| ..+.
T Consensus 239 ~~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~ 305 (469)
T PRK10923 239 DEIGDMP------------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL-NVIR 305 (469)
T ss_pred eccccCC------------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHh-ccee
Confidence 9999882 1222334443332211 112357888888753 35667888888 4567
Q ss_pred ecCCCHHHHHH----HHHHHHhhC----CCC----CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1068 VNLPDAPNRAK----ILQVILAKE----DLS----PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1068 v~lPd~eeR~e----IL~~ll~k~----~l~----~dvdl~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
+.+|...+|.+ +++.++... +.. .+..+..|....--.+.++|+++++.|+..+
T Consensus 306 i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 77777666653 555555432 211 1222444444443446689999998887643
No 254
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.39 E-value=1.1e-06 Score=98.53 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=107.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc------eEEEecc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 970 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~------fi~Id~s 970 (1138)
...++|+++.+++...+.++... . .- .++|+|||||+|||....+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~----------~--~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM----------P--GL--PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC----------C--CC--CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 45678888888888888777432 1 12 389999999999999999999998543 1223333
Q ss_pred ccccccccchHHHHHHHHHHHhc-------cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEE
Q 001150 971 SITSKWFGEGEKYVKAVFSLASK-------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1043 (1138)
Q Consensus 971 eL~s~~iG~~E~~I~~lF~~A~k-------~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VL 1043 (1138)
+-.+ ++- ...--+.|..++. ..+..|++||.|.+. ...+.++++++..+ ..++.
T Consensus 103 d~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~-----------t~n~r 163 (360)
T KOG0990|consen 103 DDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKY-----------TANTR 163 (360)
T ss_pred CccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHh-----------ccceE
Confidence 2111 111 1222345555543 267899999999883 34455555544443 35566
Q ss_pred EEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCC
Q 001150 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1089 (1138)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l 1089 (1138)
++..+|.+..+.+++++|| ..+.|...+..+....+.+++.....
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchh
Confidence 6677899999999999999 66788877877777777777765443
No 255
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.38 E-value=8.5e-06 Score=99.00 Aligned_cols=200 Identities=19% Similarity=0.281 Sum_probs=117.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc----
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 973 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~---- 973 (1138)
.+.+|+..+.+-.+.++.++...+. . ..+.+-+||+||+|||||++++.||+++++.+++...+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 5677888777777777777653211 1 12234688999999999999999999999998876433220
Q ss_pred ---cccccc---hHHHHH--HHH-----HHHhc-----------cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 974 ---SKWFGE---GEKYVK--AVF-----SLASK-----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 974 ---s~~iG~---~E~~I~--~lF-----~~A~k-----------~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
..+.+. ...++. ..| ..++. ..+.||+|+|+-.++... ....+.++..++.
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYLR 161 (519)
T ss_pred cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHHH
Confidence 011111 010111 112 11111 246799999998664221 1333444444432
Q ss_pred HhcCCCccCCC-CEEEEEe-c------CCC--------CCCcHHHHhcC-CceEEecCCCHHHHHHHHHHHHhhC-----
Q 001150 1030 NWDGLRTKDTE-RILVLAA-T------NRP--------FDLDEAVIRRL-PRRLMVNLPDAPNRAKILQVILAKE----- 1087 (1138)
Q Consensus 1030 ~Ldgl~~~~~~-~VLVIaT-T------N~p--------~~Ld~aLlrRF-d~~I~v~lPd~eeR~eIL~~ll~k~----- 1087 (1138)
.. .. ++++|.| + |.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 162 ---~~----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~ 234 (519)
T PF03215_consen 162 ---SS----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSS 234 (519)
T ss_pred ---cC----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhc
Confidence 21 23 7888877 1 111 14567777732 2678899888888888888888765
Q ss_pred CC--CCc-cc-HHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001150 1088 DL--SPD-VD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1088 ~l--~~d-vd-l~~LA~~teGySgaDL~~L~~~Aa~~ai 1122 (1138)
+. .++ .. ++.|+..+.| ||+.++..-.+.+.
T Consensus 235 ~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 235 GKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred CCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 11 122 22 6677766654 77776665555555
No 256
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.38 E-value=1.1e-06 Score=92.59 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=66.3
Q ss_pred ceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCC-CceEEcCeeccCCCeeEccCCCEEEEee
Q 001150 139 NVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGS 217 (1138)
Q Consensus 139 ~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~-nGt~VNg~~~gk~~~~~L~~gDeI~f~~ 217 (1138)
...+....+|+||+..+|+.|.+..+|..||.|.+..+. .||+|+++ |||||||.++.. .+.|+.||.|.|+.
T Consensus 83 ~~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 83 VIVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred ccccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcceEECCeEccC--cEEcCCCCEEEECc
Confidence 334444689999999999999999999999999987655 58899986 999999999998 89999999999987
Q ss_pred cCC
Q 001150 218 LGN 220 (1138)
Q Consensus 218 ~~~ 220 (1138)
...
T Consensus 157 ~~~ 159 (191)
T COG1716 157 TLA 159 (191)
T ss_pred cce
Confidence 764
No 257
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.38 E-value=7.8e-07 Score=110.46 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=74.1
Q ss_pred CCcceeeeC---CeEEEcCCCCcce-----eecCCCCccceEEEEEEecCCceEEEEEEeCC-CceEEcCee-----ccC
Q 001150 136 QNSNVPICA---SIFTVGSSRQCNF-----PLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKN-----LKK 201 (1138)
Q Consensus 136 ~~~~~~i~~---~~~tvGr~~~cd~-----~l~~~~~s~~hcki~~~~~~~~~~~~led~s~-nGt~VNg~~-----~gk 201 (1138)
..+.|.|++ --|+|||..+||+ .|.++.||+.|.+|.+... ..||||+.| |||||||+. +..
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~----~~~~~Dl~S~nGT~v~~~~~~r~~~~p 620 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG----AFFLMDLRSEHGTYVTDNEGRRYRATP 620 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC----EEEEEECCCCCccEEeCCCCceEecCC
Confidence 346688844 5599999999997 9999999999999997732 379999988 999999988 556
Q ss_pred CCeeEccCCCEEEEeecCCeeEEEEee
Q 001150 202 NTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1138)
Q Consensus 202 ~~~~~L~~gDeI~f~~~~~~ayif~~~ 228 (1138)
|..+.|++||+|-|+..++-+|--+.+
T Consensus 621 ~~~~~l~~~d~I~~g~~~~~~fr~~~~ 647 (668)
T PLN02927 621 NFPARFRSSDIIEFGSDKKAAFRVKVI 647 (668)
T ss_pred CCceEeCCCCEEEeCCCcceeEEEEee
Confidence 789999999999999988755654443
No 258
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.36 E-value=1.8e-06 Score=92.07 Aligned_cols=164 Identities=18% Similarity=0.291 Sum_probs=87.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC---ceEEEec-ccc---------------------ccc-------------ccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SSI---------------------TSK-------------WFG 978 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~---~fi~Id~-seL---------------------~s~-------------~iG 978 (1138)
..++|+||.|+|||+|++.+...+.- ..+.++. ... ... ...
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 57999999999999999999998822 1222211 000 000 001
Q ss_pred chHHHHHHHHHHHhccC-CeEEEEcCCcccc-cCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC----
Q 001150 979 EGEKYVKAVFSLASKIA-PSVIFVDEVDSML-GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---- 1052 (1138)
Q Consensus 979 ~~E~~I~~lF~~A~k~~-PsIIfIDEID~L~-~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---- 1052 (1138)
.....+..++....+.. ..||+|||++.+. ..... ..++..|...++..... .++.+|.++....
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED-------KDFLKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEE 171 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT-------HHHHHHHHHHHHH------TTEEEEEEESSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch-------HHHHHHHHHHHhhcccc--CCceEEEECCchHHHHH
Confidence 12334566666665543 4899999999996 22211 22333344444442222 3444444433311
Q ss_pred --CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC-CC-CCcccHHHHHHHcCCCcHHHHH
Q 001150 1053 --DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-DL-SPDVDFDAIANMTDGYSGSDLK 1111 (1138)
Q Consensus 1053 --~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~-~l-~~dvdl~~LA~~teGySgaDL~ 1111 (1138)
.-...+..|+.. +.++..+.++..++++..+.+. ++ ..+.+++.+...+.|+.+ .|.
T Consensus 172 ~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~-~l~ 232 (234)
T PF01637_consen 172 FLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR-YLQ 232 (234)
T ss_dssp TT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH-HHH
T ss_pred hhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH-HHh
Confidence 112235557755 9999999999999999987765 11 256778899999988554 443
No 259
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.5e-07 Score=107.38 Aligned_cols=144 Identities=24% Similarity=0.285 Sum_probs=89.5
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------Cc----
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------AN---- 963 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---------~~---- 963 (1138)
...|.|+.|++..|+.|.-.... .+++||+||||||||+||+.+...+- ..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG----------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s 238 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG----------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHS 238 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc----------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhh
Confidence 45799999999999999877653 15899999999999999998865541 11
Q ss_pred ----------eE----------EEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHH
Q 001150 964 ----------FI----------NISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM 1023 (1138)
Q Consensus 964 ----------fi----------~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~i 1023 (1138)
++ ..++..+++.+ + .+.-.-.. ....+||||||+-.+ -+.+
T Consensus 239 ~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG-~---~p~PGeIs---LAH~GVLFLDElpef------------~~~i 299 (490)
T COG0606 239 LAGDLHEGCPLKIHRPFRAPHHSASLAALVGGG-G---VPRPGEIS---LAHNGVLFLDELPEF------------KRSI 299 (490)
T ss_pred hcccccccCccceeCCccCCCccchHHHHhCCC-C---CCCCCcee---eecCCEEEeeccchh------------hHHH
Confidence 00 11111111111 0 00000011 112479999999644 3567
Q ss_pred HHHHHHHhcCCCc---------cCCCCEEEEEecCCC-----------------------CCCcHHHHhcCCceEEecCC
Q 001150 1024 KNEFMVNWDGLRT---------KDTERILVLAATNRP-----------------------FDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1024 l~~LL~~Ldgl~~---------~~~~~VLVIaTTN~p-----------------------~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
++.|.+-|+.... .-..++.+|+++|.. ..|...|++|+|..+.++.+
T Consensus 300 Le~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~ 379 (490)
T COG0606 300 LEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRL 379 (490)
T ss_pred HHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCC
Confidence 7777665544321 112567888888861 24456788899999998876
Q ss_pred CHHH
Q 001150 1072 DAPN 1075 (1138)
Q Consensus 1072 d~ee 1075 (1138)
+..+
T Consensus 380 ~~~e 383 (490)
T COG0606 380 SAGE 383 (490)
T ss_pred CHHH
Confidence 6433
No 260
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.6e-06 Score=97.07 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=66.4
Q ss_pred hcccCCccccccccccccccc-hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 001150 381 AGILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1138)
Q Consensus 381 ~~vv~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1138)
..+-.|.+|.--.|+ |-+. |..|.+|-=|+|-|-|.=.+.....+.-=.-.-|||-||.| .+++.||+.||+.+.
T Consensus 47 ~~lPtP~eik~~Ld~--YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~Ln 122 (408)
T COG1219 47 SELPTPKEIKAHLDE--YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKILN 122 (408)
T ss_pred ccCCChHHHHHHhhh--heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHhC
Confidence 356778888887887 5555 99999999999999776433222222333334699999999 899999999999999
Q ss_pred CeEEEeecccc
Q 001150 460 AKLLIFDSHSL 470 (1138)
Q Consensus 460 a~ll~~d~~~~ 470 (1138)
++|-+-|.+.|
T Consensus 123 VPFaiADATtL 133 (408)
T COG1219 123 VPFAIADATTL 133 (408)
T ss_pred CCeeeccccch
Confidence 99999998555
No 261
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.30 E-value=8.1e-06 Score=97.44 Aligned_cols=169 Identities=21% Similarity=0.304 Sum_probs=101.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc-----cccchHHH-------HHHHHHHHhccCCeEEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~-----~iG~~E~~-------I~~lF~~A~k~~PsIIfI 1001 (1138)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|..... ....|. ....++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEE
Confidence 469999999999999999998876 579999999876322 11211000 001122 223579999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEE
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1067 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1067 (1138)
||||.|- ..+...|+..++... .....++.+|+||+.. ..+.+.+..|+ ..+.
T Consensus 244 d~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~ 310 (457)
T PRK11361 244 DEIGEMP------------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIH 310 (457)
T ss_pred echhhCC------------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccce
Confidence 9999882 122333333333211 1112457899999864 35666777777 4577
Q ss_pred ecCCCHHHHHH----HHHHHHhhC----CCC-CcccH---HHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1068 VNLPDAPNRAK----ILQVILAKE----DLS-PDVDF---DAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1068 v~lPd~eeR~e----IL~~ll~k~----~l~-~dvdl---~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
+..|...+|.+ +++.++.+. +.. ..++. +.|....--.+.++|+++++.|+..+
T Consensus 311 i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 311 LILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred ecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 88888777754 444444332 111 12333 33433332346688999998887643
No 262
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=4.5e-06 Score=96.06 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=87.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC-------------------------ceEEEecccccccccc-----chHHH
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSITSKWFG-----EGEKY 983 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~-------------------------~fi~Id~seL~s~~iG-----~~E~~ 983 (1138)
+-+..+||+||+|+|||++|+++|+.+.+ .|+.+....-. .-.| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 34467999999999999999999999843 12333221100 0001 11234
Q ss_pred HHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHH
Q 001150 984 VKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI 1059 (1138)
Q Consensus 984 I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLl 1059 (1138)
++.+.+.+... ...|++||+++.|- ....+.++..++... ..+.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHH
Confidence 56666666543 45699999999882 223344555555432 23567778888899999999
Q ss_pred hcCCceEEecCCCHHHHHHHHHH
Q 001150 1060 RRLPRRLMVNLPDAPNRAKILQV 1082 (1138)
Q Consensus 1060 rRFd~~I~v~lPd~eeR~eIL~~ 1082 (1138)
+|+ ..+.|..|+.++..+.+..
T Consensus 162 SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 SRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHh-hhhcCCCCCHHHHHHHHHh
Confidence 999 7889999999887777653
No 263
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.25 E-value=1.9e-05 Score=87.39 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcC
Q 001150 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTD 1103 (1138)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~te 1103 (1138)
|+-+++.++.|+ .+|..-+.+.++.++|++...+.+++.- +..+..|+.+..
T Consensus 348 PhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 348 PHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred CCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 678889999999 7788888889999999999988887763 333555555433
No 264
>PRK15115 response regulator GlrR; Provisional
Probab=98.25 E-value=5.5e-06 Score=98.70 Aligned_cols=165 Identities=17% Similarity=0.272 Sum_probs=100.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHHHHHHHHH---------------HhccCCeE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSL---------------ASKIAPSV 998 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~I~~lF~~---------------A~k~~PsI 998 (1138)
..++|+|++|+||+++|+++.... +.+|+.++|..+...+. -..+|.. ......++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 369999999999999999998886 58999999987632211 1112211 11223579
Q ss_pred EEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcCCc
Q 001150 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPR 1064 (1138)
Q Consensus 999 IfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~ 1064 (1138)
|||||||.|- ......|+..++... .....++.+|+||+.. ..+.+.+..|+ .
T Consensus 232 l~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~ 298 (444)
T PRK15115 232 LFLDEIGDMP------------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-N 298 (444)
T ss_pred EEEEccccCC------------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-c
Confidence 9999999882 122223333332211 1112367888888753 24445556666 4
Q ss_pred eEEecCCCHHHHHH----HHHHHHhhC----CCC----CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1065 RLMVNLPDAPNRAK----ILQVILAKE----DLS----PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1065 ~I~v~lPd~eeR~e----IL~~ll~k~----~l~----~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
.+.+.+|...+|.+ +++.++... +.. .+.-+..|....-.-+.++|+++++.|+..
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 67788888888854 445555432 111 222345555544344678899988888764
No 265
>PRK08181 transposase; Validated
Probab=98.23 E-value=4.6e-06 Score=93.58 Aligned_cols=70 Identities=23% Similarity=0.388 Sum_probs=50.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccc-hHHHHHHHHHHHhccCCeEEEEcCCcccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~-~E~~I~~lF~~A~k~~PsIIfIDEID~L~ 1008 (1138)
.+++|+||||||||+||.++++++ |..++.+++.+++..+... ......+++.... .+.+|+|||++.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 579999999999999999999876 7888888888776543211 1112233443332 46899999998763
No 266
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.20 E-value=5.1e-06 Score=98.40 Aligned_cols=84 Identities=27% Similarity=0.460 Sum_probs=65.3
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHHhhccCCccccccc-ccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCC
Q 001150 383 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 460 (1138)
Q Consensus 383 vv~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~-~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a 460 (1138)
+.+|++|.-.++. |.+. |+.|..|..|+|-|.+.-...... .+.....+.|||.||+| .++++|||+||+.+++
T Consensus 59 ~~~p~~i~~~L~~--~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 59 LPTPKEIKAHLDQ--YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARILDV 134 (412)
T ss_pred CCCHHHHHHHHhh--HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHhCC
Confidence 6778888877777 3444 889999999999887775332111 13444567899999999 9999999999999999
Q ss_pred eEEEeecccc
Q 001150 461 KLLIFDSHSL 470 (1138)
Q Consensus 461 ~ll~~d~~~~ 470 (1138)
+|..+|.+.+
T Consensus 135 pf~~id~~~l 144 (412)
T PRK05342 135 PFAIADATTL 144 (412)
T ss_pred Cceecchhhc
Confidence 9999997544
No 267
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.20 E-value=2.3e-05 Score=87.15 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=75.2
Q ss_pred CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC------------CCCCcHHHHhcC
Q 001150 995 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------PFDLDEAVIRRL 1062 (1138)
Q Consensus 995 ~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~------------p~~Ld~aLlrRF 1062 (1138)
-|+||||||++.| .-.-..++++.+.. +-.++++++ ||+ |.-++-.|+.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 4678888888765 11112233332221 235566555 443 678888999998
Q ss_pred CceEEecCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1063 PRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1063 d~~I~v~lPd~eeR~eIL~~ll~k~~l~~d-vdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
.+|...+.+.++..+||+..+.++.+.-+ ..++.|......-+-+.-.+|+..|.+.+.++-
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK 413 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 77888888999999999999988876633 335556666555566667778888877777653
No 268
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.19 E-value=3.4e-06 Score=101.92 Aligned_cols=145 Identities=26% Similarity=0.320 Sum_probs=85.5
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--eEEEecccccc--
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-- 974 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~--fi~Id~seL~s-- 974 (1138)
.|.++.|...+++.+.-.+ .....++|+||||+|||+|++.++..+.-. =..+....+.+
T Consensus 189 d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 5677777776665542211 122579999999999999999998766210 01111111100
Q ss_pred ------------------------ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 001150 975 ------------------------KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1138)
Q Consensus 975 ------------------------~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~ 1030 (1138)
..+|.....-...+..|.. .+||||||+.+ . ..++..|+..
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~-------~~~~~~L~~~ 317 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----E-------RRTLDALREP 317 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----C-------HHHHHHHHHH
Confidence 0111111111123444444 89999999876 1 2333444443
Q ss_pred hcCCC---------ccCCCCEEEEEecCCCC---------------------CCcHHHHhcCCceEEecCCCHH
Q 001150 1031 WDGLR---------TKDTERILVLAATNRPF---------------------DLDEAVIRRLPRRLMVNLPDAP 1074 (1138)
Q Consensus 1031 Ldgl~---------~~~~~~VLVIaTTN~p~---------------------~Ld~aLlrRFd~~I~v~lPd~e 1074 (1138)
|+... .....++.+|+|+|... .|...+++|||..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 42221 11246799999999742 4778999999999999988644
No 269
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.19 E-value=1.5e-05 Score=98.82 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=41.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg 961 (1138)
...|+++.|++++++.|...+.. + .++||+||||+|||++|++++..+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~--------------~--~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ--------------R--RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh--------------C--CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 46789999999999988876652 1 3799999999999999999998874
No 270
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.18 E-value=3.2e-05 Score=98.71 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 402 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
+..|..+.+...++..... ...+.+||+|||| +++++|||+||+.++.++.-++.
T Consensus 326 ~~~k~~i~~~~~~~~~~~~---------~~~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGK---------MKGPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred HHHHHHHHHHHHHHHhhcC---------CCCceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 4556666654444432221 1234699999999 99999999999999999988875
No 271
>PF13173 AAA_14: AAA domain
Probab=98.17 E-value=7.5e-06 Score=81.39 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=69.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP 1014 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~ 1014 (1138)
+-++|+||+|+|||++++.+++.+. -.++.+++.+.........+ +.+.+.........+||||||+.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 3589999999999999999999886 77888887765332111111 2233332222267899999999771
Q ss_pred chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC----CcHHHHhcCCceEEecCCCHHH
Q 001150 1015 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD----LDEAVIRRLPRRLMVNLPDAPN 1075 (1138)
Q Consensus 1015 ~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~----Ld~aLlrRFd~~I~v~lPd~ee 1075 (1138)
.....+..+ ++.. .++-+|.|+..... +.+.+..|+ ..+.+.+.+..|
T Consensus 75 ----~~~~~lk~l---~d~~-----~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ----DWEDALKFL---VDNG-----PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ----cHHHHHHHH---HHhc-----cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 112222222 2221 23445555544333 334444566 466777777655
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.14 E-value=7.2e-06 Score=94.52 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=48.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccc---hHHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~---~E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+++|+||+|+|||+||.+||+++ |..++.++..+++...... ........+.... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 579999999999999999999998 7888889888875543111 0001111122222 4579999999755
No 273
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.14 E-value=9.6e-06 Score=91.71 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=60.4
Q ss_pred CCeEEEEcchhhhhcC------CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCC
Q 001150 657 CPFILFMKDAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 730 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~------~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~ 730 (1138)
.+-||||||++.+... ..+..+.|-..|+...++++||++++... +|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-----------------------~~~--- 174 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-----------------------MDS--- 174 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH---
Confidence 3469999999986432 12333444555566678999999987542 010
Q ss_pred CccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 731 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 731 ~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
| ...+.+|.+||+..|.++.++.+++..||+..+.+
T Consensus 175 --~----------~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 175 --F----------FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred --H----------HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1 12578899999999999999999999999987755
No 274
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.14 E-value=5.2e-06 Score=83.60 Aligned_cols=105 Identities=22% Similarity=0.432 Sum_probs=64.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
..|||+|++||||+++|++|....+ .+|+.+++..+. ..+++.+ ..++|||+|||.|-
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~----- 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS----- 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC-----
Confidence 3599999999999999999998874 466766666532 3344444 66899999999882
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCC
Q 001150 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1014 ~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
......|+..+.... ..++.+|+++..+ ..+++.+..||. .+.+.+|
T Consensus 83 -------~~~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lP 136 (138)
T PF14532_consen 83 -------PEAQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLP 136 (138)
T ss_dssp -------HHHHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE-
T ss_pred -------HHHHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCC
Confidence 122223333333221 2455666666542 246677777884 3344444
No 275
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.12 E-value=1.2e-05 Score=96.29 Aligned_cols=172 Identities=22% Similarity=0.319 Sum_probs=99.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccc-----ccchHHH----HHHHHHHHhccCCeEEEEcCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY----VKAVFSLASKIAPSVIFVDEV 1004 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~-----iG~~E~~----I~~lF~~A~k~~PsIIfIDEI 1004 (1138)
..+++.|.+||||+++|+++.... +.+|+.++|..+...+ +|..... .............++||||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 469999999999999999998876 5799999998763321 1211000 000000111224689999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHhcCCC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecC
Q 001150 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~l 1070 (1138)
+.|- ..+...|+..++... ......+.||+||+.. ..+.+.+..|+ ..+.+.+
T Consensus 238 ~~l~------------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~l 304 (463)
T TIGR01818 238 GDMP------------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRL-NVIRIHL 304 (463)
T ss_pred hhCC------------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHh-CcceecC
Confidence 9882 122233333333211 0112356788888753 35667777887 3456666
Q ss_pred CCHHHH----HHHHHHHHhhC----CCC-CcccHHHHHHHcC---CCcHHHHHHHHHHHHHHH
Q 001150 1071 PDAPNR----AKILQVILAKE----DLS-PDVDFDAIANMTD---GYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1071 Pd~eeR----~eIL~~ll~k~----~l~-~dvdl~~LA~~te---GySgaDL~~L~~~Aa~~a 1121 (1138)
|...+| ..+++.++... +.. ..++.+.+..+.. --+.++|+++++.|+..+
T Consensus 305 PpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 305 PPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 665444 44555555432 211 1233344443333 224589999999988754
No 276
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.11 E-value=9.6e-06 Score=92.68 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=49.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccch-HHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~-E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.++++|+||+|+|||+||.|+|+++ |..+..+.+++++..+.... .......+.... ...||+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 3689999999999999999999998 78888888887654432111 111223333333 4579999999743
No 277
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.08 E-value=1.4e-05 Score=78.51 Aligned_cols=98 Identities=15% Similarity=0.311 Sum_probs=60.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh--------CCceEEEecccccc--------------cccc--chHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--------------KWFG--EGEKYVKAVFSLAS 992 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el--------g~~fi~Id~seL~s--------------~~iG--~~E~~I~~lF~~A~ 992 (1138)
..++++||+|+|||++++.++..+ ..+++.++++.... .... ........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999988 67888887754310 0001 12233344555555
Q ss_pred ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC
Q 001150 993 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1138)
Q Consensus 993 k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN 1049 (1138)
+....+|+|||+|.|. ...+++.+...++ ..+-+++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-----------~~~~l~~l~~l~~----~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-----------SDEFLEFLRSLLN----ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-----------THHHHHHHHHHTC----SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-----------CHHHHHHHHHHHh----CCCCeEEEEEChh
Confidence 5555699999999873 1444555544444 2234566666553
No 278
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.08 E-value=3.8e-06 Score=96.86 Aligned_cols=74 Identities=28% Similarity=0.554 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCCCe-eEccCCCEEEEeecCC
Q 001150 144 ASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTS-CELRSGDEVVFGSLGN 220 (1138)
Q Consensus 144 ~~~~tvGr~~~cd~~l~~~~--~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~~~-~~L~~gDeI~f~~~~~ 220 (1138)
....+|||+..||-.|.|+. ||+-||+|..- +|. .||.|+|+|||+|||..+-.|.. +-|..||+|.++
T Consensus 25 ~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd~i~iG---- 96 (430)
T COG3456 25 RGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGLLVNGSDLPLGEGSARLQQGDEILIG---- 96 (430)
T ss_pred cCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCceeecccccCCCCCccccccCCEEeec----
Confidence 45789999999999999876 89999999854 333 69999998889999999999877 999999999873
Q ss_pred eeEEEE
Q 001150 221 HAYIFQ 226 (1138)
Q Consensus 221 ~ayif~ 226 (1138)
-|||.
T Consensus 97 -~y~i~ 101 (430)
T COG3456 97 -RYIIR 101 (430)
T ss_pred -cEEEE
Confidence 36776
No 279
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.06 E-value=1.5e-05 Score=94.62 Aligned_cols=172 Identities=16% Similarity=0.239 Sum_probs=99.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccc-----ccchHHHH----HHHHHHHhccCCeEEEEcCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV----KAVFSLASKIAPSVIFVDEV 1004 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~-----iG~~E~~I----~~lF~~A~k~~PsIIfIDEI 1004 (1138)
..++++|.+|+||+++|+++.... +.+|+.++|..+...+ +|...... ............++||||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei 242 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEecc
Confidence 569999999999999999998776 5799999998763221 11110000 00000012234689999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHhcCCCc-------cCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecC
Q 001150 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~-------~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~l 1070 (1138)
+.|- ......|+..++.... .....+.+|+||+.. ..+.+.+..|+ ..+.+.+
T Consensus 243 ~~l~------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ 309 (441)
T PRK10365 243 GDIS------------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEV 309 (441)
T ss_pred ccCC------------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecC
Confidence 9883 1222333333332211 111356788877653 24556666677 4577888
Q ss_pred CCHHHHHH----HHHHHHhhC----CCC-Cccc---HHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1071 PDAPNRAK----ILQVILAKE----DLS-PDVD---FDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1071 Pd~eeR~e----IL~~ll~k~----~l~-~dvd---l~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
|...+|.+ +++.++.+. +.. ..+. +..|....-.-+.++|+++++.|+..+
T Consensus 310 ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 310 PSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred CChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 88777654 555555431 111 1123 344444332335688888888877643
No 280
>PRK06526 transposase; Provisional
Probab=98.03 E-value=7.9e-06 Score=91.04 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=47.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccc-hHHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~-~E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+++|+||||||||+||.+|+.++ |..++.+.+.+++...... ....+...+... ..+.+|+|||++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 579999999999999999999887 7777777776654432111 111222222222 34689999999976
No 281
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.02 E-value=8.3e-06 Score=86.14 Aligned_cols=69 Identities=28% Similarity=0.477 Sum_probs=47.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccch-HHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~-E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+++|+||+|+|||+||.++++++ |..+..++.++++....... .......+.... ...+|+|||+...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 689999999999999999999887 88899999888755433221 111223333333 3579999999743
No 282
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.00 E-value=6.1e-05 Score=85.58 Aligned_cols=166 Identities=24% Similarity=0.365 Sum_probs=106.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc-----ccccccchH--HHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI-----TSKWFGEGE--KYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL-----~s~~iG~~E--~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+||.|.+||||-.+|++.-... ..||+.++|+.+ .+..+|..+ +--..+|+.|.. +.+|+|||..+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc
Confidence 49999999999999999887666 789999999766 233444433 223457887776 78999999877
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcCCCcc-------CCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCH
Q 001150 1008 LGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDA 1073 (1138)
Q Consensus 1008 ~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~ 1073 (1138)
. .++...|+..+.+..-. -...|.||+||..+ ..+.+.+.-|+ .++.+..|..
T Consensus 306 S------------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpL 372 (511)
T COG3283 306 S------------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPL 372 (511)
T ss_pred C------------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCcc
Confidence 2 33444455544333221 11468999999763 34455666688 7888898888
Q ss_pred HHHHH--------HHHHHHhhCCCC-CcccHHHHHHHcC-CC--cHHHHHHHHHHHHH
Q 001150 1074 PNRAK--------ILQVILAKEDLS-PDVDFDAIANMTD-GY--SGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1074 eeR~e--------IL~~ll~k~~l~-~dvdl~~LA~~te-Gy--SgaDL~~L~~~Aa~ 1119 (1138)
.+|.. +++.+..+.++. +..+.+.+-.++. ++ +-++|+|.+-+|+.
T Consensus 373 Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 373 RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 77753 444455555544 4444444444443 22 34667776665554
No 283
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.99 E-value=4.9e-05 Score=89.98 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=61.6
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHHhhccCCccc--cccc-ccccCCCCceeeeCCCCchHHHHHHHHHHHhHh
Q 001150 383 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDH--AKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYF 458 (1138)
Q Consensus 383 vv~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~--~~~~-~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~ 458 (1138)
+..|++|.-.++++ .+. |+.|..|.-|+|-|.+.-.. .... .+..-....|||.||+| .++++|||+||+.+
T Consensus 65 ~~~p~~i~~~L~~~--ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l 140 (413)
T TIGR00382 65 LPTPKEIKAHLDEY--VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARIL 140 (413)
T ss_pred CCCHHHHHHHhcce--ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhc
Confidence 55677777777763 333 89999999999999887433 1111 11233456899999999 99999999999999
Q ss_pred CCeEEEeeccc
Q 001150 459 GAKLLIFDSHS 469 (1138)
Q Consensus 459 ~a~ll~~d~~~ 469 (1138)
++++.++|.+.
T Consensus 141 ~~pf~~~da~~ 151 (413)
T TIGR00382 141 NVPFAIADATT 151 (413)
T ss_pred CCCeEEechhh
Confidence 99998887643
No 284
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.98 E-value=1e-05 Score=90.17 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=50.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHH-H-HHHHHHHHhccCCeEEEEcCCccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-Y-VKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~-~-I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+++|+||||+|||+||.||++++ |..++.+..++++...-..-.. . -.++..... ...+|+||||...
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 689999999999999999999998 8899999999887654322111 1 112222222 4579999999855
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=9.2e-05 Score=83.82 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=78.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCceE--------EEecccccccc-ccc----hHHHHHHHHHHHhcc----CCe
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FGE----GEKYVKAVFSLASKI----APS 997 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg~~fi--------~Id~seL~s~~-iG~----~E~~I~~lF~~A~k~----~Ps 997 (1138)
-++.+||+||.|+||+.+|.++|..+-+.-. .-..+++.--. .+. .-..++.+...+... ...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 3468999999999999999999998844210 01112221000 010 122345555444433 457
Q ss_pred EEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCC
Q 001150 998 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 998 IIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
|++||++|.|- ....|.|+..++. ++.++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 98 v~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred EEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 99999999882 2334556655555 3467899999999999999999999 66777654
No 286
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.95 E-value=2.2e-05 Score=96.69 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=86.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CceEEEeccccccccccch--HHHH--------HHHHHHHhccCCeEEEEcC
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVIFVDE 1003 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~seL~s~~iG~~--E~~I--------~~lF~~A~k~~PsIIfIDE 1003 (1138)
..||||.|++|+||++++++++..+. .||+.+..+.-....+|.. +..+ ..++..| ..+||||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecC
Confidence 36899999999999999999999984 5898877655444555543 1111 1122222 237999999
Q ss_pred CcccccCCCCcchHHHHHHHHHHHHHHh---------cCCCccCCCCEEEEEecCCC---CCCcHHHHhcCCceEEecCC
Q 001150 1004 VDSMLGRRENPGEHEAMRKMKNEFMVNW---------DGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1004 ID~L~~~r~~~~~~~al~~il~~LL~~L---------dgl~~~~~~~VLVIaTTN~p---~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
+..+ . ..++..|+.-| ++.......++++|||-|.. ..|.+.++.||+..+.+..|
T Consensus 102 ~n~~-----~-------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 102 AERL-----E-------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred cccC-----C-------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 9876 2 33444444444 34444455789999985432 45889999999999999887
Q ss_pred CHHH
Q 001150 1072 DAPN 1075 (1138)
Q Consensus 1072 d~ee 1075 (1138)
...+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7554
No 287
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.92 E-value=4.6e-05 Score=92.34 Aligned_cols=189 Identities=19% Similarity=0.214 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHH
Q 001150 879 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 879 ~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~ 958 (1138)
..++...+...+.| .|.+++++|+.|.-.+..-.. ..+...+-.+.--+|||+|.||||||.|.+.+++
T Consensus 416 rpdiy~lLa~SiAP---------sIye~edvKkglLLqLfGGt~--k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~ 484 (804)
T KOG0478|consen 416 RPDIYELLARSIAP---------SIYELEDVKKGLLLQLFGGTR--KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHR 484 (804)
T ss_pred CccHHHHHHHhhch---------hhhcccchhhhHHHHHhcCCc--ccccccccccccceEEEecCCCcCHHHHHHHHHH
Confidence 34455545555554 578999999887766654222 1222222233446799999999999999999999
Q ss_pred HhCCceEEE-ecccccc--ccccchHHHHHHHHHH---HhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHH--HHHH
Q 001150 959 EAGANFINI-SMSSITS--KWFGEGEKYVKAVFSL---ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVN 1030 (1138)
Q Consensus 959 elg~~fi~I-d~seL~s--~~iG~~E~~I~~lF~~---A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~--LL~~ 1030 (1138)
.+..-.+.- ..+.-++ .++.... .-+++.-+ .--...+|-.|||+|.|- ......+-.++++ +-..
T Consensus 485 l~pRg~yTSGkGsSavGLTayVtrd~-dtkqlVLesGALVLSD~GiCCIDEFDKM~-----dStrSvLhEvMEQQTvSIA 558 (804)
T KOG0478|consen 485 LLPRGVYTSGKGSSAVGLTAYVTKDP-DTRQLVLESGALVLSDNGICCIDEFDKMS-----DSTRSVLHEVMEQQTLSIA 558 (804)
T ss_pred hCCcceeecCCccchhcceeeEEecC-ccceeeeecCcEEEcCCceEEchhhhhhh-----HHHHHHHHHHHHHhhhhHh
Confidence 884333221 0010000 0000000 00010000 011235788999999982 2222222222221 2222
Q ss_pred hcCCCccCCCCEEEEEecCCC-------------CCCcHHHHhcCCceEE-ecCCCHHHHHHHHHHHH
Q 001150 1031 WDGLRTKDTERILVLAATNRP-------------FDLDEAVIRRLPRRLM-VNLPDAPNRAKILQVIL 1084 (1138)
Q Consensus 1031 Ldgl~~~~~~~VLVIaTTN~p-------------~~Ld~aLlrRFd~~I~-v~lPd~eeR~eIL~~ll 1084 (1138)
.-|+-..-+.+.-|||++|.. -.|++.+++|||.++. ++.|+...-+.+..++.
T Consensus 559 KAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 559 KAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred hcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 344444456778899999852 1677999999998765 57888775556655554
No 288
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.89 E-value=0.00015 Score=83.54 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=42.4
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 001150 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1138)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1138)
+|++|-.- ++.+..|....-..... ....+.+||+|||| ++++.||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 57776655 77777766555322221 12345799999999 99999999999999876543
No 289
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.0005 Score=78.11 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=90.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCceE----------------EEecccccccc-ccc--hHHHHHHHHHHHhcc
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------------NISMSSITSKW-FGE--GEKYVKAVFSLASKI 994 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~fi----------------~Id~seL~s~~-iG~--~E~~I~~lF~~A~k~ 994 (1138)
+-+..+||+|| .||+.+|+++|..+-+.-. .-+.+++.--. .|. .-..|+.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34468999996 6899999999988732110 00112221100 011 123455555444432
Q ss_pred ----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecC
Q 001150 995 ----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 995 ----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~l 1070 (1138)
...|++||++|.|- ....|.||..++. ++.++++|.+|+.++.|-|.+++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 35799999999882 2334556666655 3456889999999999999999999 7788865
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHH
Q 001150 1071 PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1071 Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~ 1114 (1138)
+.++..+++ ...++..+ ....++. ..| ++.....+.
T Consensus 163 -~~~~~~~~L----~~~g~~~~-~a~~la~-~~~-s~~~A~~l~ 198 (290)
T PRK07276 163 -NEAYLIQLL----EQKGLLKT-QAELLAK-LAQ-STSEAEKLA 198 (290)
T ss_pred -cHHHHHHHH----HHcCCChH-HHHHHHH-HCC-CHHHHHHHh
Confidence 444433333 34454322 2233443 334 454444454
No 290
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.89 E-value=0.00014 Score=80.04 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=77.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1016 (1138)
.+-.++||.|||||+.++++|+.+|.+++.++|++-++ ...+.++|.-+... .+.+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 35678999999999999999999999999999988543 45677888766664 589999999988 2222
Q ss_pred HHHHHHHHHHHHHHhcCCCc---------cCCCCEEEEEecCC----CCCCcHHHHhcCCceEEecCCCHHHHHHHH
Q 001150 1017 HEAMRKMKNEFMVNWDGLRT---------KDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1138)
Q Consensus 1017 ~~al~~il~~LL~~Ldgl~~---------~~~~~VLVIaTTN~----p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL 1080 (1138)
-...-..+..+...+..-.. .-+...-+..|.|. ...|++.++.-| +.+.+..||.....+++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 22222222222222221110 01123345556663 357888888888 78889899876655543
No 291
>PRK09183 transposase/IS protein; Provisional
Probab=97.89 E-value=3.4e-05 Score=86.23 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=48.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccc-hHHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~-~E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+++|+||||+|||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+|+|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 579999999999999999998775 7778777777665332111 111233444443 235689999999865
No 292
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.89 E-value=0.00043 Score=82.69 Aligned_cols=204 Identities=17% Similarity=0.222 Sum_probs=107.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 971 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~se------ 971 (1138)
-+.+++.-+.+-...+++++. ++ ..+.. .-+.+-+||+||+|||||+.++.|++++|..+++...+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~-~~---~~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLK-QV---AEFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHH-HH---HHhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 356677666555555555544 11 11111 112245899999999999999999999999998866321
Q ss_pred -cccccccchHHHH------HHHHHHHhc------------cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhc
Q 001150 972 -ITSKWFGEGEKYV------KAVFSLASK------------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1032 (1138)
Q Consensus 972 -L~s~~iG~~E~~I------~~lF~~A~k------------~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ld 1032 (1138)
+.....+-...+. ......+.+ ..+.+|+|||+-..+... ..+..+.++..+. ...
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~g 226 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SIG 226 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hcC
Confidence 1111111111111 112222211 246699999997665331 2344444444222 111
Q ss_pred CCCccCCCCEEEEEec-CCCCCCcH------HH--HhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-Cc---ccHHHHH
Q 001150 1033 GLRTKDTERILVLAAT-NRPFDLDE------AV--IRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PD---VDFDAIA 1099 (1138)
Q Consensus 1033 gl~~~~~~~VLVIaTT-N~p~~Ld~------aL--lrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~d---vdl~~LA 1099 (1138)
..++++|.|- +.++..++ .+ .-|. ..|.|.+-...-..+.|+.++..+... .. -+...+-
T Consensus 227 ------~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 227 ------RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred ------CCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 2344444442 23232222 11 1155 568888878888888888887664322 11 1123333
Q ss_pred HHcCCCcHHHHHHHHHHHHHHH
Q 001150 1100 NMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1100 ~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
.+..| +++||+.++..-.+.+
T Consensus 300 ~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 300 LICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHh-cCccHHHHHhHhhhhc
Confidence 33443 3348887777665554
No 293
>PRK06921 hypothetical protein; Provisional
Probab=97.88 E-value=3.6e-05 Score=86.38 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=44.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~ 1006 (1138)
.+++|+|++|+|||+||.+||+++ +..++.+...+++....... ......+... ....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 579999999999999999999987 56777777766544321110 1111222222 2468999999953
No 294
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.88 E-value=2.9e-05 Score=87.43 Aligned_cols=139 Identities=21% Similarity=0.343 Sum_probs=78.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-Cc--eEEEeccccccccccchHHHHHHHHHHH----h-------ccCCeEEEEc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVIFVD 1002 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg-~~--fi~Id~seL~s~~iG~~E~~I~~lF~~A----~-------k~~PsIIfID 1002 (1138)
.++||+||+|||||++++.+...+. .. ...+.++.. .....+..+.+.. + ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999999887763 22 233444321 1112222221111 0 1134599999
Q ss_pred CCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc------CCCCEEEEEecCCC---CCCcHHHHhcCCceEEecCCCH
Q 001150 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDA 1073 (1138)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~------~~~~VLVIaTTN~p---~~Ld~aLlrRFd~~I~v~lPd~ 1073 (1138)
|+..-. .+.-+.+.. ..++.+++.. .|.... .-.++.+||+++.. ..+++.|+|.| .++.++.|+.
T Consensus 108 DlN~p~--~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQ--PDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCC--CCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 998432 222222222 2344444332 222221 11468888988753 35788999999 7899999999
Q ss_pred HHHHHHHHHHHhh
Q 001150 1074 PNRAKILQVILAK 1086 (1138)
Q Consensus 1074 eeR~eIL~~ll~k 1086 (1138)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888764
No 295
>PF05729 NACHT: NACHT domain
Probab=97.87 E-value=0.00014 Score=73.68 Aligned_cols=140 Identities=15% Similarity=0.271 Sum_probs=73.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---C-----Cce-EEEeccccccc------------cccchHHHHHH-HHHHHhccC
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---G-----ANF-INISMSSITSK------------WFGEGEKYVKA-VFSLASKIA 995 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g-----~~f-i~Id~seL~s~------------~iG~~E~~I~~-lF~~A~k~~ 995 (1138)
-++|+|+||+|||++++.++..+ + ..+ +.+.+.++... ........+.. +...+.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999999887 1 122 23333322111 00011111121 223334556
Q ss_pred CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCC--ceEEecCCCH
Q 001150 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP--RRLMVNLPDA 1073 (1138)
Q Consensus 996 PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd--~~I~v~lPd~ 1073 (1138)
..+|+||.+|.+...... .........+..++ .... ..++-+|.|++ +..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~---~~~~---~~~~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLL---PQAL---PPGVKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHh---hhcc---CCCCeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 789999999998542211 01112222333332 2211 12233333443 222212 333332 4588888999
Q ss_pred HHHHHHHHHHHhh
Q 001150 1074 PNRAKILQVILAK 1086 (1138)
Q Consensus 1074 eeR~eIL~~ll~k 1086 (1138)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998753
No 296
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.86 E-value=3e-05 Score=95.95 Aligned_cols=175 Identities=26% Similarity=0.295 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEE-Eeccc---cccccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---ITSKWF 977 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~-Id~se---L~s~~i 977 (1138)
.|.|++.+|+.|.-.++.-.. ....++...+.--+|||.|.||+|||.|.+.+++.+...++. -.+++ |.....
T Consensus 287 sIyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 577999999887766654221 111112212233579999999999999999999988554433 11111 111000
Q ss_pred cch---HHHH-HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHh--cCCCccCCCCEEEEEecCCC
Q 001150 978 GEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 978 G~~---E~~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~L--dgl~~~~~~~VLVIaTTN~p 1051 (1138)
... +.++ ..++- ...++|..|||+|.+ +..+..++-..+.+-...+ .|+...-+.+.-|+|++|..
T Consensus 365 rd~~tge~~LeaGALV---lAD~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~ 436 (682)
T COG1241 365 RDKVTGEWVLEAGALV---LADGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPK 436 (682)
T ss_pred EccCCCeEEEeCCEEE---EecCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCC
Confidence 000 0000 00111 124589999999988 3333333333332222222 22333345677789999875
Q ss_pred C-------------CCcHHHHhcCCceEEe-cCCCHHHHHHHHHHHHhh
Q 001150 1052 F-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1052 ~-------------~Ld~aLlrRFd~~I~v-~lPd~eeR~eIL~~ll~k 1086 (1138)
. +|++.|++|||.++.+ ..|+.+.-..+.++++..
T Consensus 437 ~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 437 FGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred CCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 3 6778999999987765 568777666666665544
No 297
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.86 E-value=0.00017 Score=80.76 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=103.4
Q ss_pred ccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEecccccc---
Q 001150 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS--- 974 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s--- 974 (1138)
+.|+.-+++.+...+...+.+ ....+| --+=|||++||||.++++.||+.+ .-+++..-.+..--
T Consensus 84 lfGQHla~~~Vv~alk~~~~n------~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWAN------PNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcC------CCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 456666666666666544432 222333 445699999999999999999987 23333321111100
Q ss_pred ccc-cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC-
Q 001150 975 KWF-GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF- 1052 (1138)
Q Consensus 975 ~~i-G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~- 1052 (1138)
+.+ .-.++.-.++-..+...+.+|.++||+|.|- .-+-.++.-|+.........+..+.++|.-+|.-.
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~ 227 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGS 227 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcCCcch
Confidence 000 0112223455666677788999999999882 22333444444432233323456777777776521
Q ss_pred ----------------------CCcHHHHh-------------------cCCceEEecCCCHHHHHHHHHHHHhhCCCCC
Q 001150 1053 ----------------------DLDEAVIR-------------------RLPRRLMVNLPDAPNRAKILQVILAKEDLSP 1091 (1138)
Q Consensus 1053 ----------------------~Ld~aLlr-------------------RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~ 1091 (1138)
.+.+++.. ++|..|.|-+.+...-..-++..+.+.++..
T Consensus 228 eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~ 307 (344)
T KOG2170|consen 228 EIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAP 307 (344)
T ss_pred HHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhccccc
Confidence 11111111 2344455666666677777777777777665
Q ss_pred ccc-HHHHHHHcC
Q 001150 1092 DVD-FDAIANMTD 1103 (1138)
Q Consensus 1092 dvd-l~~LA~~te 1103 (1138)
+.+ ++.+++.+.
T Consensus 308 d~~~~erva~~l~ 320 (344)
T KOG2170|consen 308 DQDFVERVANSLS 320 (344)
T ss_pred chHHHHHHHHhhc
Confidence 544 455665554
No 298
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.85 E-value=9.3e-05 Score=74.28 Aligned_cols=71 Identities=24% Similarity=0.443 Sum_probs=48.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc----------------------cccc--hHHHHHHHHHHH
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFGE--GEKYVKAVFSLA 991 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~----------------------~iG~--~E~~I~~lF~~A 991 (1138)
++|+||||+|||+++.+++..+ +.+++.++....... +... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 567777665432210 0000 111122345566
Q ss_pred hccCCeEEEEcCCccccc
Q 001150 992 SKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L~~ 1009 (1138)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677899999999998853
No 299
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.81 E-value=8.5e-05 Score=87.32 Aligned_cols=169 Identities=25% Similarity=0.335 Sum_probs=105.3
Q ss_pred cccchHHHHHHHHHHHhcccC-chhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccch
Q 001150 902 DIGALENVKDTLKELVMLPLQ-RPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG 980 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~-~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~ 980 (1138)
+|.|++++|+.|.-++.+-.. .+ .++...+..-+|+|.|.||+.|+.|.+++.+..-..++.---.+ .-+|-+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~---~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSP---GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCC---CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccc
Confidence 688999999998776654322 22 12222333457999999999999999999987744444321110 011111
Q ss_pred HHHHH-----------HHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH--hcCCCccCCCCEEEEEe
Q 001150 981 EKYVK-----------AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 981 E~~I~-----------~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~--Ldgl~~~~~~~VLVIaT 1047 (1138)
....+ ...-+| ..+|-.|||+|.+.. .+..+.-.++.+--.. --|+...-+.+.-|+|+
T Consensus 417 AAVmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e-----~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaA 488 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDE-----SDRTAIHEVMEQQTISIAKAGINTTLNARTSILAA 488 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhh-----hhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhh
Confidence 11110 111122 237889999999942 2333444444332222 34566666778889999
Q ss_pred cCCCC-------------CCcHHHHhcCCceEEe-cCCCHHHHHHHHHHHH
Q 001150 1048 TNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVIL 1084 (1138)
Q Consensus 1048 TN~p~-------------~Ld~aLlrRFd~~I~v-~lPd~eeR~eIL~~ll 1084 (1138)
+|... .|+.++++|||..+.+ +.|+.+.-..+.+++.
T Consensus 489 ANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 489 ANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred cCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhH
Confidence 98632 6788999999976654 7899888888887765
No 300
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00012 Score=84.70 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=61.4
Q ss_pred HHHHHHHHhhccc-CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCch
Q 001150 643 INTLFEVVFSESR-SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1138)
Q Consensus 643 i~~L~ev~~~~~~-~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~ 721 (1138)
|+.++|.+..... -.-.||||||||.+=-.++|+ |.+.++. |.|++|||||-.++
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~--G~iilIGATTENPs------------------- 144 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVEN--GTIILIGATTENPS------------------- 144 (436)
T ss_pred HHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcC--CeEEEEeccCCCCC-------------------
Confidence 4444444432111 346899999999955566665 5677765 99999999997653
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 001150 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 775 (1138)
Q Consensus 722 ~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~ 775 (1138)
+++..+|.-|- +.|++..=+.++-.+.+++-
T Consensus 145 ----------------------F~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 145 ----------------------FELNPALLSRA-RVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred ----------------------eeecHHHhhhh-heeeeecCCHHHHHHHHHHH
Confidence 33678888887 77788777888888888873
No 301
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00078 Score=76.93 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=90.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-------------ceEEEeccccccccccchHHHHHHHHHHHhc-----cCCeE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSV 998 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~-------------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k-----~~PsI 998 (1138)
+.+||+|+.|.||+.+|+++|+.+-+ .++.++.. +..+ .-..++.+.+.+.. ....|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCceE
Confidence 57899999999999999999998722 12223200 1111 11234444444322 25679
Q ss_pred EEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHH
Q 001150 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1138)
Q Consensus 999 IfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~e 1078 (1138)
++||++|.+- ....+.|+..++.. +..+++|.+|+.++.+-+.+++|+ .++.|..++.++..+
T Consensus 94 vII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 94 LIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHH
Confidence 9999999772 22345566666653 356777777778899999999999 789999998888776
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHcCC
Q 001150 1079 ILQVILAKEDLSPDVDFDAIANMTDG 1104 (1138)
Q Consensus 1079 IL~~ll~k~~l~~dvdl~~LA~~teG 1104 (1138)
.+... ++. +.....+|..+.|
T Consensus 157 ~l~~~----~~~-~~~a~~~a~~~~~ 177 (299)
T PRK07132 157 KLLSK----NKE-KEYNWFYAYIFSN 177 (299)
T ss_pred HHHHc----CCC-hhHHHHHHHHcCC
Confidence 66532 322 2234445555554
No 302
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.76 E-value=0.00065 Score=75.84 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=84.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hC--Cce-EEEecccc----------c---ccc------ccchHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATE--AG--ANF-INISMSSI----------T---SKW------FGEGEKYVKAVFSL 990 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~e--lg--~~f-i~Id~seL----------~---s~~------iG~~E~~I~~lF~~ 990 (1138)
..+-|.|+|++|+|||+||.++++. .. +.. +.++...- . ... ....+.....+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3467999999999999999999988 42 322 23333211 0 000 01122233444444
Q ss_pred HhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecC
Q 001150 991 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 991 A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~l 1070 (1138)
.. ..+.+|+||+++.. . .+..+...+... ..+.-||.||........ +... ...+.+..
T Consensus 98 L~-~~~~LlVlDdv~~~----------~----~~~~l~~~~~~~----~~~~kilvTTR~~~v~~~-~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 LK-DKRCLLVLDDVWDE----------E----DLEELREPLPSF----SSGSKILVTTRDRSVAGS-LGGT-DKVIELEP 156 (287)
T ss_dssp HC-CTSEEEEEEEE-SH----------H----HH-------HCH----HSS-EEEEEESCGGGGTT-HHSC-EEEEECSS
T ss_pred hc-cccceeeeeeeccc----------c----cccccccccccc----cccccccccccccccccc-cccc-cccccccc
Confidence 33 35899999999744 1 112222222111 123456667766432211 1111 36788999
Q ss_pred CCHHHHHHHHHHHHhhCC----CCCcccHHHHHHHcCCCcHHHHHHHH
Q 001150 1071 PDAPNRAKILQVILAKED----LSPDVDFDAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1071 Pd~eeR~eIL~~ll~k~~----l~~dvdl~~LA~~teGySgaDL~~L~ 1114 (1138)
.+.++-.++|........ -..+.....|++.+.|+ +-.|..+.
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~a 203 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLIA 203 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999999999875543 11233467888888774 44455543
No 303
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.73 E-value=0.00025 Score=80.38 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=40.7
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 001150 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1138)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1138)
+|++|=.. ++.+..|..+.-.....+ ...+.+||+|||| +++++||+++|++++.++..+
T Consensus 2 ~~~~~iG~--~~~~~~l~~~l~~~~~~~----------~~~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~ 61 (305)
T TIGR00635 2 LLAEFIGQ--EKVKEQLQLFIEAAKMRQ----------EALDHLLLYGPPG--LGKTTLAHIIANEMGVNLKIT 61 (305)
T ss_pred CHHHHcCH--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEe
Confidence 34444333 777777766553322221 2345699999999 999999999999998765544
No 304
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00057 Score=76.23 Aligned_cols=121 Identities=7% Similarity=0.047 Sum_probs=78.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCce--------------EEEecccccccccc---chHHHHHHHHHHHhc---
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANF--------------INISMSSITSKWFG---EGEKYVKAVFSLASK--- 993 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~f--------------i~Id~seL~s~~iG---~~E~~I~~lF~~A~k--- 993 (1138)
.++..+||+||.|+||..+|.++|..+-+.- -.-..+++.--... -.-..++.+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3457899999999999999999998883210 00111222110000 011233443333221
Q ss_pred --cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCC
Q 001150 994 --IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 994 --~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
....|++|+++|.|- ....|.||..++. ++.++++|.+|+.++.+-+.+++|+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 236799999999882 3345666666665 3467899999999999999999999 55666655
No 305
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.69 E-value=0.00021 Score=81.16 Aligned_cols=160 Identities=19% Similarity=0.331 Sum_probs=96.5
Q ss_pred ccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHH-H--HhCCceEEEecccc-------
Q 001150 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA-T--EAGANFINISMSSI------- 972 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA-~--elg~~fi~Id~seL------- 972 (1138)
+.|..+..+.+.+++.... .....+++++.||.|+|||+|..... . +.|-+|+.+.....
T Consensus 26 l~g~~~~~~~l~~~lkqt~----------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTI----------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHHHHHHHHHH----------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4566666666766664311 12234689999999999999655443 3 45666655443211
Q ss_pred --------------ccccccchHHHHHHHHHHHhcc-----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcC
Q 001150 973 --------------TSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1033 (1138)
Q Consensus 973 --------------~s~~iG~~E~~I~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldg 1033 (1138)
..+.+|.....+..+.....+. .+.|.++||||.+++.. .++++..+-+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHH
Confidence 1223344444444444433321 23455578999876431 2345555544
Q ss_pred CCccCCCCEEEEEecCCCCC---CcHHHHhcCCce-EEe-cCCCHHHHHHHHHHHH
Q 001150 1034 LRTKDTERILVLAATNRPFD---LDEAVIRRLPRR-LMV-NLPDAPNRAKILQVIL 1084 (1138)
Q Consensus 1034 l~~~~~~~VLVIaTTN~p~~---Ld~aLlrRFd~~-I~v-~lPd~eeR~eIL~~ll 1084 (1138)
+......++.||+.|.+.+. |...+.+||..+ |.+ +.....+...+++.++
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 44445689999999988764 446788899766 444 4446788888888877
No 306
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.67 E-value=4.1e-06 Score=96.66 Aligned_cols=176 Identities=24% Similarity=0.337 Sum_probs=83.4
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEec----cccccccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM----SSITSKWF 977 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~----seL~s~~i 977 (1138)
.|.|++.+|..+.-.+....... ...+...+..-++||.|.||+|||.|.+.+++.....++.--. ..+.....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceec
Confidence 56788877765533322211110 0001112334579999999999999999887666443332111 11111110
Q ss_pred c---chHHHH-HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHh--cCCCccCCCCEEEEEecCCC
Q 001150 978 G---EGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 978 G---~~E~~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~L--dgl~~~~~~~VLVIaTTN~p 1051 (1138)
. ..+..+ ...+-.|.+ +|++|||+|.+ ......++..++++-...+ .|+...-+.+.-|+|++|..
T Consensus 103 ~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~ 174 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPK 174 (331)
T ss_dssp CCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--T
T ss_pred cccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhh
Confidence 0 111111 123444444 89999999988 2222222222222111111 11222223567899999875
Q ss_pred C-------------CCcHHHHhcCCceEEe-cCCCHHHHHHHHHHHHhhC
Q 001150 1052 F-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 1087 (1138)
Q Consensus 1052 ~-------------~Ld~aLlrRFd~~I~v-~lPd~eeR~eIL~~ll~k~ 1087 (1138)
. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 175 ~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 175 FGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp T--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 4 4667899999987664 6788887888888777654
No 307
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.67 E-value=8e-05 Score=90.46 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=75.2
Q ss_pred eeC-CeEEEcCCCCcceeecCCCCccceEEEEEEe-------cCCceEEEEEEeCC-CceEEcCeeccCCCeeEccCCCE
Q 001150 142 ICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDE 212 (1138)
Q Consensus 142 i~~-~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~-------~~~~~~~~led~s~-nGt~VNg~~~gk~~~~~L~~gDe 212 (1138)
+.+ ..|+|||-..||+.+-.++||..||.|..-. +.++.-.||.|+++ -|||+|..++.+.+-+.++-|+.
T Consensus 173 l~~~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v 252 (793)
T KOG1881|consen 173 LKGAAACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHV 252 (793)
T ss_pred cccceeEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhhhHHHH
Confidence 554 7799999999999999999999999988731 22334579999987 88999999999999999999999
Q ss_pred EEEeecCCeeEEEEeecc
Q 001150 213 VVFGSLGNHAYIFQQLLN 230 (1138)
Q Consensus 213 I~f~~~~~~ayif~~~~~ 230 (1138)
+-|+...+ +||||.--.
T Consensus 253 ~~fggsTr-l~i~Qgp~e 269 (793)
T KOG1881|consen 253 ARFGGSTR-LYIFQGPEE 269 (793)
T ss_pred HHhcCceE-EEEeeCCCc
Confidence 99988877 999996533
No 308
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.63 E-value=0.00012 Score=88.82 Aligned_cols=175 Identities=27% Similarity=0.366 Sum_probs=104.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh--CCceEEEecccc-----ccccccchHHHHHHHHHHHhcc-----CCeEEEEcCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEV 1004 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el--g~~fi~Id~seL-----~s~~iG~~E~~I~~lF~~A~k~-----~PsIIfIDEI 1004 (1138)
-.+|+.|.|||||-.+|+++-... ..||+.++|..+ .+.++|..+......+..-++. .-..+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 369999999999999999998776 689999999765 3344444333322222222221 2369999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHH-hcCCCccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHH
Q 001150 1005 DSMLGRRENPGEHEAMRKMKNEFMVN-WDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR 1076 (1138)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~~LL~~-Ldgl~~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR 1076 (1138)
..| .-..+..+-+++++-... +.+-. ..-.|.||++|++. ..+.+.+--|+ ..+.|.+|...+|
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~--~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R 488 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR--IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRER 488 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc--eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhcc
Confidence 987 222333333444332221 22222 34568899999874 23344444476 5677788877777
Q ss_pred HH---HHHHHHhhCCC-CCcccHHHHHHHc----CCCcHHHHHHHHHHHHHH
Q 001150 1077 AK---ILQVILAKEDL-SPDVDFDAIANMT----DGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1077 ~e---IL~~ll~k~~l-~~dvdl~~LA~~t----eGySgaDL~~L~~~Aa~~ 1120 (1138)
.. .+..++.+..- ...++-+.++.+. .| +.++|.++++.++..
T Consensus 489 ~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l 539 (606)
T COG3284 489 SDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAAL 539 (606)
T ss_pred cccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc
Confidence 54 44555544332 2333434444433 34 557888888877654
No 309
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.0009 Score=69.32 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..|+++|+||+|||+++.-+|..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999887
No 310
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.60 E-value=0.00026 Score=85.52 Aligned_cols=216 Identities=18% Similarity=0.214 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHH
Q 001150 879 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 879 ~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~ 958 (1138)
...+.+.++..+.| .|.|.+.+|.-+.-.+.+-...... .+...+.-.+|+|+|.||+||+.+.++++.
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~~ 400 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVCA 400 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHhc
Confidence 33455556666555 5789999998876666543221110 122223335699999999999999999998
Q ss_pred HhCCceEEEecc----ccccccccchHH--H-H-HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHH-HHHHHHHHH
Q 001150 959 EAGANFINISMS----SITSKWFGEGEK--Y-V-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAM-RKMKNEFMV 1029 (1138)
Q Consensus 959 elg~~fi~Id~s----eL~s~~iG~~E~--~-I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al-~~il~~LL~ 1029 (1138)
-+...++.---+ .|....+...+. + + ....-. ...+|-.|||+|.|- ..++.++ ..+-++-+.
T Consensus 401 fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmL---ADnGICCIDEFDKMd-----~~dqvAihEAMEQQtIS 472 (764)
T KOG0480|consen 401 FSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALML---ADNGICCIDEFDKMD-----VKDQVAIHEAMEQQTIS 472 (764)
T ss_pred cCCcceEecCcccccccceEEEEecCCCCceeeecCcEEE---ccCceEEechhcccC-----hHhHHHHHHHHHhheeh
Confidence 875544432111 111111100000 0 0 001111 134799999999982 2223333 333333222
Q ss_pred Hh-cCCCccCCCCEEEEEecCCCC-------------CCcHHHHhcCCceEE-ecCCCHHHHHHHHHHHHhhCCCCCccc
Q 001150 1030 NW-DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILAKEDLSPDVD 1094 (1138)
Q Consensus 1030 ~L-dgl~~~~~~~VLVIaTTN~p~-------------~Ld~aLlrRFd~~I~-v~lPd~eeR~eIL~~ll~k~~l~~dvd 1094 (1138)
.- -|+.-.-+.+.-|||++|... .+..++++|||..+. ++.|++..-..|-++++..+..-.+
T Consensus 473 IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~-- 550 (764)
T KOG0480|consen 473 IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD-- 550 (764)
T ss_pred heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc--
Confidence 21 223333346778899998732 667899999997755 5889999999999998876442211
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1095 FDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1095 l~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
-......|+..+++..+.-|.
T Consensus 551 ---~~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 551 ---ATERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ---cccccccccHHHHHHHHHHHH
Confidence 111124677777776665554
No 311
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.59 E-value=0.00017 Score=69.82 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhC
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg 961 (1138)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998884
No 312
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.58 E-value=0.00029 Score=90.87 Aligned_cols=135 Identities=27% Similarity=0.349 Sum_probs=88.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc--cccc-----c--hHHH-HHHHHHHHhccCCeEEEEcCCcc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFG-----E--GEKY-VKAVFSLASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s--~~iG-----~--~E~~-I~~lF~~A~k~~PsIIfIDEID~ 1006 (1138)
+++||.|.||+|||+|+.|+|+..|-.+++|+.++-.. ..+| + .+-. ...-|-.|.+ ....|++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 35999999999999999999999999999999876311 1222 2 1111 1223334443 357999999973
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcCC----------CccCCCCEEEEEecCCC------CCCcHHHHhcCCceEEecC
Q 001150 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDTERILVLAATNRP------FDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1007 L~~~r~~~~~~~al~~il~~LL~~Ldgl----------~~~~~~~VLVIaTTN~p------~~Ld~aLlrRFd~~I~v~l 1070 (1138)
- ...++..|-..+|.- .-....+++|.||-|.. ..|+..|+.|| .++.+..
T Consensus 1623 a------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~ 1689 (4600)
T COG5271 1623 A------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDG 1689 (4600)
T ss_pred h------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecc
Confidence 2 233333333333221 11123578888888763 48899999999 7788887
Q ss_pred CCHHHHHHHHHHHHh
Q 001150 1071 PDAPNRAKILQVILA 1085 (1138)
Q Consensus 1071 Pd~eeR~eIL~~ll~ 1085 (1138)
.+.++...|...+..
T Consensus 1690 lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1690 LTTDDITHIANKMYP 1704 (4600)
T ss_pred cccchHHHHHHhhCC
Confidence 777777777666544
No 313
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00084 Score=81.21 Aligned_cols=74 Identities=11% Similarity=0.213 Sum_probs=57.3
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
..-||||||+|.+- .+..+.|...|+..++.+++|++++.+.
T Consensus 117 ~~kVvIIDE~h~Lt---~~a~~~LLk~LE~p~~~vv~Ilattn~~----------------------------------- 158 (472)
T PRK14962 117 KYKVYIIDEVHMLT---KEAFNALLKTLEEPPSHVVFVLATTNLE----------------------------------- 158 (472)
T ss_pred CeEEEEEEChHHhH---HHHHHHHHHHHHhCCCcEEEEEEeCChH-----------------------------------
Confidence 34699999999863 3345667788888889999999988543
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
++.++|..|+ ..+++..++.++...+++....
T Consensus 159 --------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 159 --------KVPPTIISRC-QVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred --------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHHH
Confidence 1567788888 7999999999998888876553
No 314
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.49 E-value=0.00075 Score=79.02 Aligned_cols=102 Identities=21% Similarity=0.375 Sum_probs=57.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC-ceEEEeccccc-------cccccchHHHHHHHHHHHhccCCeEEEEcCC
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSIT-------SKWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1004 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~elg~-~fi~Id~seL~-------s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEI 1004 (1138)
..+++|++|||++|+|||+|.-.....+.. .-.++.-..++ ..+.+.. ..+..+-....+ ...||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 345799999999999999999999888843 11111111111 1111111 112222222222 2359999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
+.- +..+--.+.+++..++ ...+++|+|+|.+
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 833 2233334445555543 2568999999973
No 315
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.47 E-value=0.00018 Score=78.38 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=26.2
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
-+||+|||| +++++||+.+|++++++|-.+.
T Consensus 52 h~lf~GPPG--~GKTTLA~IIA~e~~~~~~~~s 82 (233)
T PF05496_consen 52 HMLFYGPPG--LGKTTLARIIANELGVNFKITS 82 (233)
T ss_dssp EEEEESSTT--SSHHHHHHHHHHHCT--EEEEE
T ss_pred eEEEECCCc--cchhHHHHHHHhccCCCeEecc
Confidence 589999999 9999999999999999986543
No 316
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.46 E-value=0.0028 Score=70.11 Aligned_cols=109 Identities=23% Similarity=0.325 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcccCCCeEEEEcchhhhhcCCcchhhHHHHHHh----cCCCcEEEEeecccCCCccccCCCCCccccccC
Q 001150 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLE----KLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 718 (1138)
Q Consensus 643 i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~----~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~g 718 (1138)
|..|++++.. +....|||+||.. +......|..||+.|+ .-|.||+|....|+-.-+.|.
T Consensus 94 l~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~------------ 157 (249)
T PF05673_consen 94 LPELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES------------ 157 (249)
T ss_pred HHHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh------------
Confidence 5556666664 3679999999976 8888999999999994 458899999998887533333
Q ss_pred CchhhhccccCCCccc--cccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 719 SNQTALLDLAFPDSFG--RLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 719 r~~~~l~d~a~~~~f~--r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
+.+.-+ ...-...+.-+--=.|+-||+..+.+..|+.+.-++|.+..+.
T Consensus 158 ----------~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 158 ----------FSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred ----------hhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 111100 0000112222223468899999999999999999999986653
No 317
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.42 E-value=0.0014 Score=78.16 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
.+..||||||||.+-. ...+.|.+.|+. |.+++||+||....
T Consensus 91 g~~~vL~IDEi~~l~~---~~q~~LL~~le~--~~iilI~att~n~~--------------------------------- 132 (413)
T PRK13342 91 GRRTILFIDEIHRFNK---AQQDALLPHVED--GTITLIGATTENPS--------------------------------- 132 (413)
T ss_pred CCceEEEEechhhhCH---HHHHHHHHHhhc--CcEEEEEeCCCChh---------------------------------
Confidence 4678999999998543 223445566654 89999999885431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
..++.+|..|+ ..+.+..++.++...+++..+..
T Consensus 133 --------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 133 --------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred --------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 12466788888 88999999999999888876543
No 318
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.40 E-value=0.00015 Score=79.30 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=40.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc--c--------cccccchHHHHHHHHHHHh--ccCCeEEEEcCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI--T--------SKWFGEGEKYVKAVFSLAS--KIAPSVIFVDEV 1004 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL--~--------s~~iG~~E~~I~~lF~~A~--k~~PsIIfIDEI 1004 (1138)
..+||||+||+|||++|+.++. ..-++..+.+.- . ..-...+-..+.+.+..+. ...+.+||||+|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 5699999999999999999973 122333333210 0 0000111122223333332 245789999999
Q ss_pred ccccc
Q 001150 1005 DSMLG 1009 (1138)
Q Consensus 1005 D~L~~ 1009 (1138)
+.+..
T Consensus 91 ~~l~~ 95 (220)
T TIGR01618 91 SALQN 95 (220)
T ss_pred HHHHH
Confidence 98753
No 319
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.39 E-value=0.00063 Score=72.88 Aligned_cols=74 Identities=22% Similarity=0.412 Sum_probs=49.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccccc-----------------------chHHHHHHHHH
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG-----------------------EGEKYVKAVFS 989 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG-----------------------~~E~~I~~lF~ 989 (1138)
..-++|+||||+|||+++..+|... +..++.++...+....+. +....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3558999999999999999998655 667888887641000000 00112344444
Q ss_pred HHhccCCeEEEEcCCccccc
Q 001150 990 LASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 990 ~A~k~~PsIIfIDEID~L~~ 1009 (1138)
.+....+.+|+||-|..++.
T Consensus 92 ~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHhhcCccEEEEeCcHHHhH
Confidence 45555789999999998763
No 320
>PHA00729 NTP-binding motif containing protein
Probab=97.38 E-value=0.00054 Score=75.04 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCce
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANF 964 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~f 964 (1138)
..++|+|+||||||+||.+||+.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999986433
No 321
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.37 E-value=0.002 Score=73.54 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=56.7
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
.+-||+|||+|.+ +..+..+.|...|+..++++.+|.+++..+
T Consensus 100 ~~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~----------------------------------- 142 (316)
T PHA02544 100 GGKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIITANNKN----------------------------------- 142 (316)
T ss_pred CCeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEEcCChh-----------------------------------
Confidence 3568999999974 223355667777887778888888776442
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
++.++|..|| ..+.++.|+.+++..+++..+.+
T Consensus 143 --------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 143 --------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred --------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 1567788999 68999999999999988865544
No 322
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.36 E-value=0.00095 Score=80.31 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=55.5
Q ss_pred CeEEEEcchhhhhcC---CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 001150 658 PFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1138)
Q Consensus 658 p~ILfiddi~~~l~~---~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~ 734 (1138)
+-+|+||||+.+.+. ..++++.|....+. |..+||+++..+.. +.
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~------------------------------l~ 259 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKE------------------------------LP 259 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHH------------------------------HH
Confidence 459999999986542 34666666665543 56678877664431 11
Q ss_pred cccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhhh
Q 001150 735 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 735 r~~~~~~~~~~~d~~l~rRF~--~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
.+++.|.-||. ..++|..|+.++|..|++.....
T Consensus 260 ----------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 260 ----------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ----------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 14667888885 47999999999999999976643
No 323
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.0011 Score=69.31 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=46.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc------cccc-----------------------hH-----
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE-----------------------GE----- 981 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~------~iG~-----------------------~E----- 981 (1138)
+||+||||+|||+|+..++.+. |.+++.++..+-... ..|- .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887765 667766664321000 0000 00
Q ss_pred HHHHHHHHHHhccCCeEEEEcCCccccc
Q 001150 982 KYVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 982 ~~I~~lF~~A~k~~PsIIfIDEID~L~~ 1009 (1138)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124455555667899999999998753
No 324
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.33 E-value=0.00064 Score=86.83 Aligned_cols=163 Identities=21% Similarity=0.263 Sum_probs=104.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccc-------hHHHHHHHH-----HHHhccCCeEEEEcCCcc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE-------GEKYVKAVF-----SLASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~-------~E~~I~~lF-----~~A~k~~PsIIfIDEID~ 1006 (1138)
+|++||||+|||+.|.++|.++|+.++.++.++..++.... .-..+...| .........||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 69999999999999999999999999999998765443211 112233333 001111234999999998
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh
Q 001150 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1007 L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k 1086 (1138)
+.+ .. +..+.++...+.. ...-+|+++|........-+.|....++|..|+.+.+...+..++..
T Consensus 440 ~~~-~d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-ED--------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hh--------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 11 2223333333331 23346677887776666555554466999999999999888888876
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1087 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1087 ~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
+.+. .+..++.+...+ ++||++.+..-.+.
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 6544 333466666665 45676665444333
No 325
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.0067 Score=67.19 Aligned_cols=174 Identities=19% Similarity=0.225 Sum_probs=102.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CceEEEecccc-----ccccc----cch--------HHHHHHHHHHHhcc-CC
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI-----TSKWF----GEG--------EKYVKAVFSLASKI-AP 996 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg---~~fi~Id~seL-----~s~~i----G~~--------E~~I~~lF~~A~k~-~P 996 (1138)
-+.++|+-|+|||++.|+++..++ .-.+.++...+ ...++ ..+ +..-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999997777763 22334443322 11111 111 11223344444444 45
Q ss_pred eEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc----HHHHhcCCceEEecCCC
Q 001150 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD----EAVIRRLPRRLMVNLPD 1072 (1138)
Q Consensus 997 sIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld----~aLlrRFd~~I~v~lPd 1072 (1138)
.++++||.+.+. ...-++++.+.+- -.+. . ..-.+++||=..--..+. .++..|++..|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~nl----~~~~-~-~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTNL----EEDS-S-KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHhh----cccc-c-CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 2223333332221 1111 1 112355555332111111 24445887778888889
Q ss_pred HHHHHHHHHHHHhhCCCC----CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1073 APNRAKILQVILAKEDLS----PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1073 ~eeR~eIL~~ll~k~~l~----~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
.++-..+++..++..+.. .+.-+..++..+.| .+.-|.++|..|...+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 998899999999875433 34447778888888 556788888888766654
No 326
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.31 E-value=0.0033 Score=84.06 Aligned_cols=172 Identities=16% Similarity=0.247 Sum_probs=94.2
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCce---EEEeccccc--
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSIT-- 973 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~f---i~Id~seL~-- 973 (1138)
.+++++|++...+.|..++... ....+-+-|+|++|+|||+||+++++.+...| +.++...+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4678899999998888877531 11235688999999999999999998874332 112110000
Q ss_pred cccccc------------hHHHHHH-------------HHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHH
Q 001150 974 SKWFGE------------GEKYVKA-------------VFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1138)
Q Consensus 974 s~~iG~------------~E~~I~~-------------lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL 1028 (1138)
....+. ....+.. .....-+.++.+|+||+++.. ..+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 000000 0000111 111222345679999998732 1122222
Q ss_pred HHhcCCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCccc----HHHHHHHc
Q 001150 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD----FDAIANMT 1102 (1138)
Q Consensus 1029 ~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvd----l~~LA~~t 1102 (1138)
...+.+ ...-.||.||... .+++ ..+.++.+..|+.++..++|..+.-+.... ..+ ..++++.+
T Consensus 316 ~~~~~~----~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF----GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRA 385 (1153)
T ss_pred hhCccC----CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHh
Confidence 222211 1223455567643 3332 356788999999999999998876443322 222 23455566
Q ss_pred CCCc
Q 001150 1103 DGYS 1106 (1138)
Q Consensus 1103 eGyS 1106 (1138)
.|..
T Consensus 386 ~GLP 389 (1153)
T PLN03210 386 GNLP 389 (1153)
T ss_pred CCCc
Confidence 6644
No 327
>PF14516 AAA_35: AAA-like domain
Probab=97.30 E-value=0.0029 Score=73.33 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=92.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchH------------------------------
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE------------------------------ 981 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E------------------------------ 981 (1138)
|..-+.|+||..+|||+|..++++.+ |...+.+++..+........+
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 33568999999999999998887666 788888887654221111111
Q ss_pred -HHHHHHHHHH---hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-----CCCCEEEEEecCCCC
Q 001150 982 -KYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DTERILVLAATNRPF 1052 (1138)
Q Consensus 982 -~~I~~lF~~A---~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-----~~~~VLVIaTTN~p~ 1052 (1138)
..+...|+.. ....|-||+|||||.++.... +...|+..++..... ...++.+|.+.....
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~----------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ----------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc----------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 1122233321 223688999999999974311 112222222222111 123344444332222
Q ss_pred CCcHHH-HhcC--CceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1053 DLDEAV-IRRL--PRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1053 ~Ld~aL-lrRF--d~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
.+.... .+-| ...+.++.-+.++...+++.+-.. .. ...++.|-..+.|+.. =++.+|...+
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgGhP~-Lv~~~~~~l~ 244 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGGHPY-LVQKACYLLV 244 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCCCHH-HHHHHHHHHH
Confidence 121111 1123 345666777888888887776322 22 2338888888888553 4555554443
No 328
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.29 E-value=0.0016 Score=72.98 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
+++.|||.|||| .++++||++||+.+|.+++.+..+
T Consensus 20 ~g~~vLL~G~~G--tGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 20 SGYPVHLRGPAG--TGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred cCCeEEEEcCCC--CCHHHHHHHHHHHhCCCEEEEeCC
Confidence 456899999999 999999999999999999998753
No 329
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.22 E-value=0.0067 Score=70.48 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCCcchhhHHHHH--HhcCC-CcEEEEeecccCCCccccCCCCCccccccC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR--LEKLP-DKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 718 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~~~~~lk~~--L~~l~-g~VvvIGstt~~d~~d~k~~~~~~~l~r~g 718 (1138)
.++.+++.+.. ...++||+|||+|.++....++...|... ....+ .+|.+|+.+|..+..
T Consensus 116 ~~~~l~~~l~~--~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~--------------- 178 (365)
T TIGR02928 116 VFRRLYKELNE--RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFR--------------- 178 (365)
T ss_pred HHHHHHHHHHh--cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchH---------------
Confidence 45666666543 25689999999999875444432222222 12233 689999999876520
Q ss_pred CchhhhccccCCCccccccccCCCchHHHHHHhhhC-CCeEEEeCCCHHHHHHHHHHhhh
Q 001150 719 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 719 r~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF-~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
.+ ++..+..|| +..|.+++++.++...|++..++
T Consensus 179 ---------------~~----------l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 179 ---------------EN----------LDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ---------------hh----------cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 11 344555566 36799999999999999997764
No 330
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.22 E-value=0.0025 Score=75.59 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=53.0
Q ss_pred eEEEEcchhhhhcC---CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 659 FILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 659 ~ILfiddi~~~l~~---~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
-+|+||||+.+.+. +.++++.|....+. +..+||+++..+.. +.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~iiits~~~p~~------------------------------l~- 247 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQIVLTSDRPPKE------------------------------LP- 247 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCCEEEecCCCHHH------------------------------Hh-
Confidence 48999999975542 24466666655543 56677777654431 11
Q ss_pred ccccCCCchHHHHHHhhhCCC--eEEEeCCCHHHHHHHHHHhhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPN--KVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~--~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
.+++.|..||.. .+.|..|+.++|..|++.....
T Consensus 248 ---------~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 248 ---------GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---------hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 135567777854 7999999999999999976544
No 331
>PRK07261 topology modulation protein; Provisional
Probab=97.21 E-value=0.0026 Score=66.70 Aligned_cols=102 Identities=15% Similarity=0.282 Sum_probs=61.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchH
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~ 1017 (1138)
.|+|+|+||+|||+||+.|+..++.+++.++.-.....|.. .+ ..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~-------------------------~~----------~~ 46 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQE-------------------------RD----------DD 46 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccccc-------------------------CC----------HH
Confidence 58999999999999999999999998887654221111100 00 01
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh
Q 001150 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1018 ~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k 1086 (1138)
+.... +..+ +. ... .|| -.|....+-+..+.+++.+|.+..|-......+++..+..
T Consensus 47 ~~~~~-~~~~---~~------~~~-wIi-dg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 47 DMIAD-ISNF---LL------KHD-WII-DGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred HHHHH-HHHH---Hh------CCC-EEE-cCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 11111 1122 11 123 233 3333333434555688889999999888888888887753
No 332
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.18 E-value=0.00034 Score=68.00 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEec
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id~ 969 (1138)
|+|.|+||+|||++|+.||..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876664
No 333
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.15 E-value=0.00062 Score=75.67 Aligned_cols=71 Identities=25% Similarity=0.400 Sum_probs=47.8
Q ss_pred eEEEECCCCCCHHHHHHHHH------HHhCCceEEEeccccccccccc-hHHHHHHHHHHH--------hccCCeEEEEc
Q 001150 938 GILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSKWFGE-GEKYVKAVFSLA--------SKIAPSVIFVD 1002 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA------~elg~~fi~Id~seL~s~~iG~-~E~~I~~lF~~A--------~k~~PsIIfID 1002 (1138)
.+||.||+|.||+.||+.|- +.+..+|++++|..+.+...-+ .-+.++..|.-| +....++||+|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehH
Confidence 59999999999999999885 4457899999999875431100 001122222222 22245799999
Q ss_pred CCcccc
Q 001150 1003 EVDSML 1008 (1138)
Q Consensus 1003 EID~L~ 1008 (1138)
||..|.
T Consensus 290 eigelg 295 (531)
T COG4650 290 EIGELG 295 (531)
T ss_pred hhhhcC
Confidence 999883
No 334
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.00098 Score=72.03 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=78.9
Q ss_pred CCCCcccCCcchh--hcccCCCC--cceeeeC-CeEEEcCCC-CcceeecCCCCccceEEEEE--E--ecCC-----ceE
Q 001150 117 QNPTFETSTPWCR--LLSQSGQN--SNVPICA-SIFTVGSSR-QCNFPLKDQAISAVLCKIKH--V--QSEG-----SAV 181 (1138)
Q Consensus 117 ~~~~~~~~~pWgr--L~s~~~~~--~~~~i~~-~~~tvGr~~-~cd~~l~~~~~s~~hcki~~--~--~~~~-----~~~ 181 (1138)
.+-.++++.||.| ||+-.... |.+-|.. +.|.+||.. --||-++.++-|+-||.|.- + ++.+ .+-
T Consensus 161 y~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvk 240 (293)
T KOG1882|consen 161 YNEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVK 240 (293)
T ss_pred ecCCchhcCchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeee
Confidence 5677888899875 77765443 3444444 889999954 45666677788999998854 2 2222 446
Q ss_pred EEEEEeCC-CceEEcCeeccCCCeeEccCCCEEEEeecCC
Q 001150 182 AMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGSLGN 220 (1138)
Q Consensus 182 ~~led~s~-nGt~VNg~~~gk~~~~~L~~gDeI~f~~~~~ 220 (1138)
.||=|+++ ||||+|.++|..-.-..|..+|.|-|+....
T Consensus 241 pYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~r 280 (293)
T KOG1882|consen 241 PYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFGFSSR 280 (293)
T ss_pred eEEEecCCCCcceecCcccCchheeeeecCceeeeccchH
Confidence 89999977 9999999999999999999999999986543
No 335
>PRK04195 replication factor C large subunit; Provisional
Probab=97.09 E-value=0.0077 Score=73.25 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 001150 401 SENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1138)
Q Consensus 401 se~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1138)
.+..+..|.+.+--+.+. ...+.+||+|||| +++++||+|||++++..++.++.++
T Consensus 19 ~~~~~~~l~~~l~~~~~g-----------~~~~~lLL~GppG--~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 19 NEKAKEQLREWIESWLKG-----------KPKKALLLYGPPG--VGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CHHHHHHHHHHHHHHhcC-----------CCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEcccc
Confidence 377777777765433311 1157899999999 9999999999999998887777644
No 336
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.07 E-value=0.003 Score=74.30 Aligned_cols=98 Identities=22% Similarity=0.409 Sum_probs=62.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc------ccc--------chHHHHHHHHHHHhccCCe
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 997 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~------~iG--------~~E~~I~~lF~~A~k~~Ps 997 (1138)
+..-+||+|+||+|||+|+.++|..+ +.++++++..+-... .+| ..+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33568999999999999999998776 457777776432111 011 1122345667777778899
Q ss_pred EEEEcCCcccccCCC--CcchHHHHHHHHHHHHHHhc
Q 001150 998 VIFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNWD 1032 (1138)
Q Consensus 998 IIfIDEID~L~~~r~--~~~~~~al~~il~~LL~~Ld 1032 (1138)
+|+||+|..+..... .++.....+.++..|....+
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999998864321 12223344555555555443
No 337
>PRK08118 topology modulation protein; Reviewed
Probab=97.07 E-value=0.0013 Score=68.82 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEec
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~ 969 (1138)
..|+++||||+|||+||+.|++.++++++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998874
No 338
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0041 Score=79.32 Aligned_cols=139 Identities=23% Similarity=0.338 Sum_probs=98.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEeccccc--cccccchHHHHHHHHHHHhc-cCCeEEEEcC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDE 1003 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id~seL~--s~~iG~~E~~I~~lF~~A~k-~~PsIIfIDE 1003 (1138)
++-+|.|.||+|||.++.-+|+.. +..++.+++..+. .++.|+.+..++.+..++.. ....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 567999999999999999999887 3456667766543 35667788899999988884 4567899999
Q ss_pred CcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC-----CCCCcHHHHhcCCceEEecCCCHHHHHH
Q 001150 1004 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1138)
Q Consensus 1004 ID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~-----p~~Ld~aLlrRFd~~I~v~lPd~eeR~e 1078 (1138)
++.+.+...+.+ .....+.|.-.+. ...+.+|+||.. ...-+|++-+|| ..+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L~------rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLLA------RGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHHh------cCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhh
Confidence 998876654422 1222222222221 233888988753 235578999999 567789999888777
Q ss_pred HHHHHHhh
Q 001150 1079 ILQVILAK 1086 (1138)
Q Consensus 1079 IL~~ll~k 1086 (1138)
||..+...
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77776655
No 339
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.0059 Score=74.52 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=58.2
Q ss_pred CeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 001150 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 737 (1138)
Q Consensus 658 p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~ 737 (1138)
.-|++|||+|.+ +.+..+.|...|+..+..+++|.+|+..+
T Consensus 129 ~KVvIIDEa~~L---s~~a~naLLk~LEepp~~~vfI~aTte~~------------------------------------ 169 (507)
T PRK06645 129 HKIFIIDEVHML---SKGAFNALLKTLEEPPPHIIFIFATTEVQ------------------------------------ 169 (507)
T ss_pred cEEEEEEChhhc---CHHHHHHHHHHHhhcCCCEEEEEEeCChH------------------------------------
Confidence 458999999975 24566778888888888999998887543
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 738 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 738 ~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
++.+.|..|. +.|++..++.++....++..+.+
T Consensus 170 -------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 170 -------KIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred -------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 2566788888 78999999999999988877654
No 340
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.03 E-value=0.00068 Score=81.63 Aligned_cols=165 Identities=26% Similarity=0.344 Sum_probs=92.7
Q ss_pred HHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 881 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 881 e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el 960 (1138)
.+..++++.+.| .|.|++.+|..+.-.+.+-......- +.. .+.--++||+|.|||||+.+.+.+++..
T Consensus 438 ~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~~~-khk-vRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 438 PIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNPGG-KHK-VRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred cHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCCCC-Cce-eccceeEEEecCCCccHHHHHHHHHhcC
Confidence 345556677666 57899999999887776533221100 001 1222469999999999999999999988
Q ss_pred CCceEEEecc---------c----cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHH
Q 001150 961 GANFINISMS---------S----ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1138)
Q Consensus 961 g~~fi~Id~s---------e----L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~L 1027 (1138)
...++.--.. . +...|.=+. ...-+|.+ +|-+|||+|.+-.... ...|+++. ++-
T Consensus 507 ~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDR-tSIHEAME---QQS 574 (854)
T KOG0477|consen 507 PRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDR-TSIHEAME---QQS 574 (854)
T ss_pred cceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEccC---ceEEeehhhhhccccc-chHHHHHH---hcc
Confidence 6555442211 0 011121111 11223333 7999999999943321 12233322 111
Q ss_pred HHH-hcCCCccCCCCEEEEEecCCC-----------C--CCcHHHHhcCCceEEe
Q 001150 1028 MVN-WDGLRTKDTERILVLAATNRP-----------F--DLDEAVIRRLPRRLMV 1068 (1138)
Q Consensus 1028 L~~-Ldgl~~~~~~~VLVIaTTN~p-----------~--~Ld~aLlrRFd~~I~v 1068 (1138)
+.. -.|+...-..+..||||+|.. + .|.+.+++|||....+
T Consensus 575 ISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 575 ISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred hhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 110 111222223567889999872 1 5667899999865444
No 341
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.03 E-value=0.00092 Score=71.40 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=57.8
Q ss_pred EEEECCCCCCHHHHHHHH-HHHh---CCceEEEeccccccccccc----hHH-------------HHHHHHHHHhccCCe
Q 001150 939 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 997 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArAL-A~el---g~~fi~Id~seL~s~~iG~----~E~-------------~I~~lF~~A~k~~Ps 997 (1138)
.|++|.||+|||+.|... +... |.+++. +...+.-..+.. ... ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4433 666555 433221111100 000 001111111111578
Q ss_pred EEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCC
Q 001150 998 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 998 IIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
||+|||+..+++.+.... ......+ .++...+ ...+-||.+|..+..|+..+++..+..+++..+
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 999999999998765421 1112222 2222222 245678888999999999998877666666533
No 342
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.02 E-value=0.0034 Score=75.60 Aligned_cols=98 Identities=24% Similarity=0.413 Sum_probs=62.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccc------cc--------chHHHHHHHHHHHhccCCe
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPS 997 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~------iG--------~~E~~I~~lF~~A~k~~Ps 997 (1138)
+..-+||+|+||+|||+|+.++|... +.++++++..+-.... .| ..+..+..++..+.+..|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33568999999999999999998776 6788888765422111 11 1122355677777777899
Q ss_pred EEEEcCCcccccCCCC--cchHHHHHHHHHHHHHHhc
Q 001150 998 VIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWD 1032 (1138)
Q Consensus 998 IIfIDEID~L~~~r~~--~~~~~al~~il~~LL~~Ld 1032 (1138)
+|+||+|..+...... ++.....+.++..|....+
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK 195 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999988643211 2223334455555554443
No 343
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.97 E-value=0.00092 Score=78.99 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=62.9
Q ss_pred CCccccccccccccccc-hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEE
Q 001150 385 DGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 463 (1138)
Q Consensus 385 ~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll 463 (1138)
+|++|.-.++.| ++. ++.|.+|.-|+|.|.+...+..-.+. ...+++|||.||+| +++++||||||+.++++++
T Consensus 2 tP~~I~~~Ld~~--IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 2 TPREIVAELDKY--IIGQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFI 76 (441)
T ss_pred CHHHHHHHHhhh--ccCHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEE
Confidence 345555555553 444 89999999999999776554322222 22347899999999 9999999999999999999
Q ss_pred Eeeccccc
Q 001150 464 IFDSHSLL 471 (1138)
Q Consensus 464 ~~d~~~~~ 471 (1138)
-+|++.+.
T Consensus 77 ~vdat~~~ 84 (441)
T TIGR00390 77 KVEATKFT 84 (441)
T ss_pred Eeecceee
Confidence 99998774
No 344
>PRK13949 shikimate kinase; Provisional
Probab=96.95 E-value=0.0057 Score=64.14 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
..|+|.|+||+|||++++.||+.++++|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 345
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.94 E-value=0.0098 Score=76.25 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
..+.|+|.|||| ++++.|+|++|+.++-++.-++
T Consensus 348 ~g~~i~l~GppG--~GKTtl~~~ia~~l~~~~~~i~ 381 (784)
T PRK10787 348 KGPILCLVGPPG--VGKTSLGQSIAKATGRKYVRMA 381 (784)
T ss_pred CCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEE
Confidence 345799999999 9999999999999999988777
No 346
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.012 Score=75.53 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=58.8
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
.-=|+||||+|.+ +.+..|.|.+.|+..+..+++|..++..+.
T Consensus 120 ~~KV~IIDEad~l---t~~a~NaLLK~LEEpP~~~~fIl~tt~~~k---------------------------------- 162 (824)
T PRK07764 120 RYKIFIIDEAHMV---TPQGFNALLKIVEEPPEHLKFIFATTEPDK---------------------------------- 162 (824)
T ss_pred CceEEEEechhhc---CHHHHHHHHHHHhCCCCCeEEEEEeCChhh----------------------------------
Confidence 4458999999985 357788899999999999999998875541
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+.+.|..|. +.|+|..+..+...+.|+..+.+
T Consensus 163 ---------Ll~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 163 ---------VIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred ---------hhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 456677777 89999999888887777765533
No 347
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.93 E-value=0.00078 Score=70.71 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCce
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---GANF 964 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g~~f 964 (1138)
+|+|+|+||+|||+|++.++..+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999888 5553
No 348
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.92 E-value=0.0036 Score=67.99 Aligned_cols=34 Identities=38% Similarity=0.650 Sum_probs=29.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s 970 (1138)
.-++|+|+||+|||++|.++|.+. +.+++.++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 458999999999999999999755 7788888876
No 349
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.91 E-value=0.0022 Score=83.35 Aligned_cols=136 Identities=21% Similarity=0.256 Sum_probs=86.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc------cccccccchHHHH---HHHHHHHhccCCeEEEEcCCcccc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKYV---KAVFSLASKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~se------L~s~~iG~~E~~I---~~lF~~A~k~~PsIIfIDEID~L~ 1008 (1138)
.+||.||+-+|||+++..+|.+.|..|++|+-.+ +++.|+....+.+ ..+.-.|.+. .-.|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccC-
Confidence 5999999999999999999999999999998644 3333333222211 2233334332 357999999732
Q ss_pred cCCCCcchHHHHHHHHHHHHHHhcCC--C-----ccCCCCEEEEEecCCCC------CCcHHHHhcCCceEEecCCCHHH
Q 001150 1009 GRRENPGEHEAMRKMKNEFMVNWDGL--R-----TKDTERILVLAATNRPF------DLDEAVIRRLPRRLMVNLPDAPN 1075 (1138)
Q Consensus 1009 ~~r~~~~~~~al~~il~~LL~~Ldgl--~-----~~~~~~VLVIaTTN~p~------~Ld~aLlrRFd~~I~v~lPd~ee 1075 (1138)
+. ..-+++ |.|+..-+.+ + ..+...+++.||-|.|. .|..+|++|| ..++|..-..++
T Consensus 968 pT----DVLEaL----NRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 PT----DVLEAL----NRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred cH----HHHHHH----HHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 11 122233 3332211111 1 11235688888888764 6778999999 677887767777
Q ss_pred HHHHHHHHH
Q 001150 1076 RAKILQVIL 1084 (1138)
Q Consensus 1076 R~eIL~~ll 1084 (1138)
...|++..+
T Consensus 1039 le~ILh~rc 1047 (4600)
T COG5271 1039 LEEILHGRC 1047 (4600)
T ss_pred HHHHHhccC
Confidence 777776543
No 350
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.90 E-value=0.0063 Score=77.20 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
...||||||||.+-.. .-+.|.+.++ .|.|++||+||....
T Consensus 109 ~~~IL~IDEIh~Ln~~---qQdaLL~~lE--~g~IiLI~aTTenp~---------------------------------- 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA---QQDALLPWVE--NGTITLIGATTENPY---------------------------------- 149 (725)
T ss_pred CceEEEEeChhhCCHH---HHHHHHHHhc--CceEEEEEecCCChH----------------------------------
Confidence 4579999999985332 2234445564 389999999986431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
++++.+|..|. ..|.++.++.++...+|+..+.
T Consensus 150 -------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 150 -------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred -------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 12566676666 6789999999999999997665
No 351
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.89 E-value=0.012 Score=69.84 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=78.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchH
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~ 1017 (1138)
-++|+||.++|||++++.+.....-.++.++..++......- ...-..+..+.......||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 689999999999999988888885556666665553322111 122233333333355799999999772
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC--CCCCcHHHHhcCCceEEecCCCHHHHHH-------------HHHH
Q 001150 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNR--PFDLDEAVIRRLPRRLMVNLPDAPNRAK-------------ILQV 1082 (1138)
Q Consensus 1018 ~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~--p~~Ld~aLlrRFd~~I~v~lPd~eeR~e-------------IL~~ 1082 (1138)
.+...+-...|... ..+++.+++.. ...+.+.+..|. ..+.+.+.+..+... .++.
T Consensus 108 ----~W~~~lk~l~d~~~----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~ 178 (398)
T COG1373 108 ----DWERALKYLYDRGN----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEK 178 (398)
T ss_pred ----hHHHHHHHHHcccc----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHH
Confidence 22222322333321 13444443322 123344555685 677788888888865 5777
Q ss_pred HHhhCCCC
Q 001150 1083 ILAKEDLS 1090 (1138)
Q Consensus 1083 ll~k~~l~ 1090 (1138)
++...++.
T Consensus 179 Yl~~GGfP 186 (398)
T COG1373 179 YLETGGFP 186 (398)
T ss_pred HHHhCCCc
Confidence 77665543
No 352
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.0074 Score=72.65 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=53.7
Q ss_pred CCeEEEEcchhhhhcC---CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 001150 657 CPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 733 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~---~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f 733 (1138)
++-+|+|||++.+.+. +.++++.|....+. |..+||++...+.. +
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~------------------------------l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQK------------------------------L 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHH------------------------------H
Confidence 5669999999987653 34677766655543 56677776543321 1
Q ss_pred ccccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhh
Q 001150 734 GRLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 734 ~r~~~~~~~~~~~d~~l~rRF~--~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
. .+.+.|..||. ..+.|.+|+.|.|..|+++...
T Consensus 242 ~----------~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 242 S----------EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred H----------HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 1 14556776773 4778999999999999987654
No 353
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.84 E-value=0.0012 Score=67.98 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=29.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
+..|+|+|+||+|||++|++||..++++++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999999888654
No 354
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.84 E-value=0.0029 Score=75.04 Aligned_cols=160 Identities=24% Similarity=0.313 Sum_probs=92.8
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEe----ccccccccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 977 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id----~seL~s~~i 977 (1138)
.|.|.+++|+.+.-+++.--+ ..+-.+-..+.--+|||.|.|||.|+.|.+-+-+-..+-++.-- ++.|....+
T Consensus 332 SIfG~~DiKkAiaClLFgGsr--K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR--KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc--ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 467999999999888765322 11112222233356999999999999999998877655444311 111111000
Q ss_pred cch---HHHH-HHHHHHHhccCCeEEEEcCCcccccCCCCcchH-HHHHHHHHH-HHHHhcCCCccCCCCEEEEEecCCC
Q 001150 978 GEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH-EAMRKMKNE-FMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 978 G~~---E~~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~-~al~~il~~-LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
..+ +-++ +...-+| ..+|+.|||+|.+-. .+. ..+..+-++ .-..--|+...-+.+.-|+|++|.+
T Consensus 410 RD~~tReFylEGGAMVLA---DgGVvCIDEFDKMre-----~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLA---DGGVVCIDEFDKMRE-----DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred ecCCcceEEEecceEEEe---cCCEEEeehhhccCc-----hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 000 0000 0011112 347999999999831 111 222333222 2223356666667888899999874
Q ss_pred C-------------CCcHHHHhcCCceEEecCC
Q 001150 1052 F-------------DLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1052 ~-------------~Ld~aLlrRFd~~I~v~lP 1071 (1138)
. ++.+.+++|||.++.+..-
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~ 514 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDE 514 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEecc
Confidence 2 3447999999999888643
No 355
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.82 E-value=0.0041 Score=74.73 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=103.1
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEE---------Eecccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------ISMSSI 972 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~---------Id~seL 972 (1138)
.|.|++.+|+.+.-++.+-.. ..+..+.-.+.--+|||.|.|-+.|+.|.|.+.+.....+-. +.++.-
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 468999999998877654322 122233333334569999999999999999998876332211 111111
Q ss_pred ccccccchHHHHH-HHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHh--cCCCccCCCCEEEEEecC
Q 001150 973 TSKWFGEGEKYVK-AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATN 1049 (1138)
Q Consensus 973 ~s~~iG~~E~~I~-~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~L--dgl~~~~~~~VLVIaTTN 1049 (1138)
...- ..|..+. ...-+|. .+|+.|||+|.| +..+.-+.-.++.+--+.+ -|++..-+.+.-|||++|
T Consensus 380 tD~e--TGERRLEAGAMVLAD---RGVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQE--TGERRLEAGAMVLAD---RGVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccc--cchhhhhcCceEEcc---CceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111 1222221 1222333 389999999998 3444445445544433333 456666678899999999
Q ss_pred CCC-------------CCcHHHHhcCCceEEe-cCCCHHHHHHHHHHHH
Q 001150 1050 RPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVIL 1084 (1138)
Q Consensus 1050 ~p~-------------~Ld~aLlrRFd~~I~v-~lPd~eeR~eIL~~ll 1084 (1138)
..+ .|++.+++|||..+.+ +.-+.+.-..|-.+.+
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 742 5678999999976654 4445444444544444
No 356
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.80 E-value=0.0017 Score=79.21 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=47.5
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCceEEEec
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 969 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-g~~fi~Id~ 969 (1138)
-|+|+.|++++++.+.+.+..... .. ..+..-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl--~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GL--EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hc--CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 477899999999999887732111 11 1222468999999999999999999998 567777654
No 357
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.80 E-value=0.0061 Score=70.29 Aligned_cols=74 Identities=27% Similarity=0.340 Sum_probs=50.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc----------------cccccchHHHHHHHHHHHhccCCe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIAPS 997 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~----------------s~~iG~~E~~I~~lF~~A~k~~Ps 997 (1138)
.-++|+||||+|||+||..++... +.+++.++..... -......+..+..+...++...+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 458899999999999988877655 6777777654311 111122334444444555667899
Q ss_pred EEEEcCCcccccC
Q 001150 998 VIFVDEVDSMLGR 1010 (1138)
Q Consensus 998 IIfIDEID~L~~~ 1010 (1138)
+|+||-|..|.+.
T Consensus 136 lIVIDSv~al~~~ 148 (321)
T TIGR02012 136 IIVVDSVAALVPK 148 (321)
T ss_pred EEEEcchhhhccc
Confidence 9999999988753
No 358
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.80 E-value=0.0047 Score=69.44 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=61.2
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEe-ccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSIT 973 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id-~seL~ 973 (1138)
.++++++-.....+.|++++.. +...++|.||+|+|||++++++...+. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677777777777777666642 223589999999999999999987773 3345443 12221
Q ss_pred cc-----ccc-chHHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 974 SK-----WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 974 s~-----~iG-~~E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 111 111235667777788899999999995
No 359
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.77 E-value=0.036 Score=71.95 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=86.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc--------------ccc-ccc---------------chHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI--------------TSK-WFG---------------EGEKYVKA 986 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL--------------~s~-~iG---------------~~E~~I~~ 986 (1138)
+-++|+||+|.|||+++...+...+ ++..++...- +.. ..+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3589999999999999999888777 6666655311 000 000 00112233
Q ss_pred HHHHHhc-cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCce
Q 001150 987 VFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1065 (1138)
Q Consensus 987 lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~ 1065 (1138)
++..... ..|.+|+|||++.+- . ......+..|+ +..+ ..+.+|.++...-.+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~---~~~~----~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFL---RHQP----ENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHH---HhCC----CCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 578999999999661 1 12222333333 3322 23444345544222321111111233
Q ss_pred EEec----CCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHH
Q 001150 1066 LMVN----LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1066 I~v~----lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~ 1114 (1138)
+.+. ..+.++-.+++...+.. .+ +..++..|.+.|+|..- -|+.+.
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp~-~l~l~~ 226 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWAT-ALQLIA 226 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChHH-HHHHHH
Confidence 4555 56888888888765432 22 34567888899998653 354433
No 360
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.77 E-value=0.01 Score=65.35 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=47.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc----cc-------------------------ccc--ch
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SK-------------------------WFG--EG 980 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~----s~-------------------------~iG--~~ 980 (1138)
+..-++|.|++|+|||++|.+++..+ +...+.++..+-. .. ..+ ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 33569999999999999987665544 5666666543110 00 000 01
Q ss_pred HHHHHHHHHHHhccCCeEEEEcCCcccc
Q 001150 981 EKYVKAVFSLASKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 981 E~~I~~lF~~A~k~~PsIIfIDEID~L~ 1008 (1138)
+..+..+...+....|.+++|||+-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344555666656678999999998765
No 361
>PHA02624 large T antigen; Provisional
Probab=96.77 E-value=0.0011 Score=81.21 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=65.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC-cc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN-PG 1015 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~-~~ 1015 (1138)
+.+||+||||||||+++++|++.++...+.++++.-.+. |.+.-...-.+.+||++-.-.-.... +.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 579999999999999999999999777777876552221 21111112257788887422110000 00
Q ss_pred hHHHHHHHHHHHHHHhcCC-Ccc----CCCCE-----EEEEecCCCCCCcHHHHhcCCceEEecC
Q 001150 1016 EHEAMRKMKNEFMVNWDGL-RTK----DTERI-----LVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1016 ~~~al~~il~~LL~~Ldgl-~~~----~~~~V-----LVIaTTN~p~~Ld~aLlrRFd~~I~v~l 1070 (1138)
+ ..+. =+.-|-..|||- +.. ...++ -+|.|||. ..|+..+.-||..++.|..
T Consensus 500 G-~~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 G-QGMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred c-cccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0 0000 011233344554 110 00111 13446665 5678888889988888854
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.02 Score=66.56 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=44.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc----------cccc----------chHHHHHHHHHHHh
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------KWFG----------EGEKYVKAVFSLAS 992 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s----------~~iG----------~~E~~I~~lF~~A~ 992 (1138)
+.-++|+|++|+|||+++..+|..+ +..+..+++..+.. ...| .+...+......++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 3679999999999999988888776 55555555432210 0001 11122233344444
Q ss_pred ccCCeEEEEcCCccc
Q 001150 993 KIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 993 k~~PsIIfIDEID~L 1007 (1138)
.....+|+||...++
T Consensus 220 ~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 ARGIDVVLIDTAGRM 234 (336)
T ss_pred hCCCCEEEEECCCcc
Confidence 455679999999765
No 363
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.026 Score=67.27 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=57.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCceEEEeccccccc-------c---ccc---hHHHHHHHHHHHhccCCeEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK-------W---FGE---GEKYVKAVFSLASKIAPSVI 999 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL~s~-------~---iG~---~E~~I~~lF~~A~k~~PsII 999 (1138)
.-++|.||+|+|||+++..||..+ |..+..+++..+... | .+- ....+..+...+......+|
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999999754 445555554432110 0 010 11113334444444566889
Q ss_pred EEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-CCCCEEEEEecCCCCCCcHH
Q 001150 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DTERILVLAATNRPFDLDEA 1057 (1138)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-~~~~VLVIaTTN~p~~Ld~a 1057 (1138)
+||=..... .... .+.+|...++..... ....++|+.++...+.+...
T Consensus 304 LIDTaGr~~------rd~~----~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 304 LIDTAGYSH------RNLE----QLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred EEeCCCCCc------cCHH----HHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 999643221 1111 122222222222111 22467777777776666443
No 364
>PHA02774 E1; Provisional
Probab=96.74 E-value=0.018 Score=70.57 Aligned_cols=130 Identities=15% Similarity=0.261 Sum_probs=75.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE-EeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG 1015 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~-Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~ 1015 (1138)
+.++|+||||||||++|.+|++.++..++. ++...- -| +..+. .-.|++|||+-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~--Fw-----------Lqpl~--d~ki~vlDD~t~~-------- 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH--FW-----------LQPLA--DAKIALLDDATHP-------- 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc--cc-----------cchhc--cCCEEEEecCcch--------
Confidence 579999999999999999999999655544 443210 11 11111 1259999999211
Q ss_pred hHHHHHHHHHHHHHHhcCCCcc----CC-----CCEEEEEecCCCCCCcH---HHHhcCCceEEecC-------------
Q 001150 1016 EHEAMRKMKNEFMVNWDGLRTK----DT-----ERILVLAATNRPFDLDE---AVIRRLPRRLMVNL------------- 1070 (1138)
Q Consensus 1016 ~~~al~~il~~LL~~Ldgl~~~----~~-----~~VLVIaTTN~p~~Ld~---aLlrRFd~~I~v~l------------- 1070 (1138)
...-+-..|...++|-+.. .. ..--+|.|||..-.-++ .+.+|+ ..+.|+.
T Consensus 492 ---~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~~P~d~~G~P~f~ 567 (613)
T PHA02774 492 ---CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNPFPLDENGNPVFE 567 (613)
T ss_pred ---HHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCCCCcCCCCCEeee
Confidence 1111112344445554110 00 11235568885433333 455565 4455432
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcc
Q 001150 1071 PDAPNRAKILQVILAKEDLSPDV 1093 (1138)
Q Consensus 1071 Pd~eeR~eIL~~ll~k~~l~~dv 1093 (1138)
.+......+|+++.....+.+..
T Consensus 568 ltd~~WKsFF~rlw~~LdL~d~e 590 (613)
T PHA02774 568 LTDANWKSFFERLWSQLDLSDQE 590 (613)
T ss_pred eCchhHHHHHHHHHHHcCCCCcc
Confidence 25678889999999988887443
No 365
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.73 E-value=0.0033 Score=67.51 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=44.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC----ceEEEecc-cccc---------ccccchHHHHHHHHHHHhccCCeEEEEcC
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVIFVDE 1003 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~----~fi~Id~s-eL~s---------~~iG~~E~~I~~lF~~A~k~~PsIIfIDE 1003 (1138)
-++|.||+|+|||+++++++..+.. .++.+..+ ++.. ..++.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999888742 23332221 1110 01122223345566677777899999999
Q ss_pred Cc
Q 001150 1004 VD 1005 (1138)
Q Consensus 1004 ID 1005 (1138)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 366
>PRK13695 putative NTPase; Provisional
Probab=96.73 E-value=0.0088 Score=62.50 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el 960 (1138)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988775
No 367
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.70 E-value=0.0057 Score=61.32 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=41.2
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEE
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINI 967 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~I 967 (1138)
.+.|+.-+.+.+...+...+.. ....+| --+-|+|++|||||++++.||+.+ +-+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~------~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~ 89 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLAN------PNPRKP-LVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ 89 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcC------CCCCCC-EEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceee
Confidence 4567777777777777654432 222333 456699999999999999999996 4455543
No 368
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.025 Score=66.36 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=56.0
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
..-|++|||+|.+- .+..+.|...|+..++.+.+|.+++..+
T Consensus 119 ~~kviIIDEa~~l~---~~a~naLLk~lEe~~~~~~fIl~t~~~~----------------------------------- 160 (363)
T PRK14961 119 RFKVYLIDEVHMLS---RHSFNALLKTLEEPPQHIKFILATTDVE----------------------------------- 160 (363)
T ss_pred CceEEEEEChhhcC---HHHHHHHHHHHhcCCCCeEEEEEcCChH-----------------------------------
Confidence 34599999999852 3445667777888888888888776443
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
++.+.|..|+ ..+++..|+.++....++..+.+
T Consensus 161 --------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 161 --------KIPKTILSRC-LQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred --------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 1456777788 89999999999988888865543
No 369
>PRK04296 thymidine kinase; Provisional
Probab=96.67 E-value=0.016 Score=61.90 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=41.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCceEEEec--c--c----cccccccch-H----HHHHHHHHHH--hccCCeEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---GANFINISM--S--S----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVI 999 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g~~fi~Id~--s--e----L~s~~iG~~-E----~~I~~lF~~A--~k~~PsII 999 (1138)
-+|++||+|+|||+++..++..+ +..++.+.. . . +.+. .|.. + .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37899999999999998888776 555555532 1 1 1111 1110 0 1123333333 23467899
Q ss_pred EEcCCccc
Q 001150 1000 FVDEVDSM 1007 (1138)
Q Consensus 1000 fIDEID~L 1007 (1138)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 370
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.0097 Score=64.99 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=47.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh--C------CceEEEec-cccccccccchHH-------------HHHHHHHHHhcc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISM-SSITSKWFGEGEK-------------YVKAVFSLASKI 994 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el--g------~~fi~Id~-seL~s~~iG~~E~-------------~I~~lF~~A~k~ 994 (1138)
.+.||.||||+|||+|.+-||..+ | ..+.-+|- +++.+...|-+.. .-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999887 2 22333443 3343333333221 113356677888
Q ss_pred CCeEEEEcCCccc
Q 001150 995 APSVIFVDEVDSM 1007 (1138)
Q Consensus 995 ~PsIIfIDEID~L 1007 (1138)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 371
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.67 E-value=0.008 Score=69.43 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=50.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc----------------ccccccchHHHHHHHHHHHhccCCe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 997 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL----------------~s~~iG~~E~~I~~lF~~A~k~~Ps 997 (1138)
.-++|+||||+|||+||-.++.+. +...+.++...- .-......+..+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 457899999999999999887554 677777776331 1111112333444444455666889
Q ss_pred EEEEcCCcccccC
Q 001150 998 VIFVDEVDSMLGR 1010 (1138)
Q Consensus 998 IIfIDEID~L~~~ 1010 (1138)
+|+||-|-.+.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999988753
No 372
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.67 E-value=0.0034 Score=62.68 Aligned_cols=32 Identities=53% Similarity=0.863 Sum_probs=26.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
|+|.||||+|||++|+.++..++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 789999999999999999999994 44554444
No 373
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.024 Score=72.57 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=35.4
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCC
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 701 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d 701 (1138)
.--|+||||+|.+ +.+..+.|...|+.-++.+++|++||...
T Consensus 119 k~KViIIDEAh~L---T~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 119 RFKVYLIDEVHML---SRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CcEEEEEechHhc---CHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 4469999999995 56777888889999999999999988664
No 374
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.66 E-value=0.014 Score=67.81 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.0
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~se 971 (1138)
.+..-+.....|..++.. .. ..-+..+.|+|..|||||++.+++.+.++.+.+++++-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 344556677777776642 11 122346799999999999999999999999999988754
No 375
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.64 E-value=0.026 Score=66.35 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhh-cCCcchhhHHHHHHhcCCC-cEEEEeecccCCCccccCCCCCccccccCC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSI-AGNSDSYSTFKSRLEKLPD-KVIVIGSHTHTDNRKEKSHPGGLLFTKFGS 719 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l-~~~~~~~~~lk~~L~~l~g-~VvvIGstt~~d~~d~k~~~~~~~l~r~gr 719 (1138)
+++.+.+.+.+ +..++||+|||+|.+. ....+....|...+..+.+ +|.+|+..+..+-
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~----------------- 185 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF----------------- 185 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch-----------------
Confidence 56666666654 3568999999999987 2223333333334444455 7888888775541
Q ss_pred chhhhccccCCCccccccccCCCchHHHHHHhhhC-CCeEEEeCCCHHHHHHHHHHhhh
Q 001150 720 NQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 720 ~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF-~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
.+ + .+..+..+| +..|.+++++.++...||+..+.
T Consensus 186 -----~~--------~----------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 186 -----LY--------I----------LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred -----hh--------h----------cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 00 0 223333344 46788999999999999987663
No 376
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.64 E-value=0.025 Score=68.05 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
++..++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 34679999999999999999999877 56666666543
No 377
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.59 E-value=0.0069 Score=65.01 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=52.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc----cccccchHHHHHHHHHHHh---------ccCCeEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKWFGEGEKYVKAVFSLAS---------KIAPSVIF 1000 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~----s~~iG~~E~~I~~lF~~A~---------k~~PsIIf 1000 (1138)
+-++|.||||||||++++.++..+ +..++.+....-. ....+.....+..++.... .....+||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999987666 6666666543211 0111111112222221111 12347999
Q ss_pred EcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
|||+..+- ...+..++..+.. .+.+++++|-.+..
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~QL 133 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQL 133 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTSH
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcchh
Confidence 99998662 2233344444333 24678888887763
No 378
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.56 E-value=0.015 Score=69.76 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=23.9
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1138)
.+-|+|+|||| +++++|||+||+.+.
T Consensus 194 ~~~iil~GppG--tGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPG--VGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCC--CCHHHHHHHHHHHhc
Confidence 56899999999 999999999999875
No 379
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.55 E-value=0.011 Score=63.92 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=28.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s 970 (1138)
.-++|+|+||+|||+++.++|.+. +.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 458999999999999999999776 5677777653
No 380
>PRK13947 shikimate kinase; Provisional
Probab=96.54 E-value=0.0024 Score=66.06 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
+|+|.|+||+|||++|+.||+.++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 381
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.033 Score=70.19 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=52.5
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
.--|++|||+|.+ +.+..|.|...|+.-+.++++|.++|....
T Consensus 119 r~KVIIIDEah~L---T~~A~NALLKtLEEPP~~v~FILaTtd~~K---------------------------------- 161 (830)
T PRK07003 119 RFKVYMIDEVHML---TNHAFNAMLKTLEEPPPHVKFILATTDPQK---------------------------------- 161 (830)
T ss_pred CceEEEEeChhhC---CHHHHHHHHHHHHhcCCCeEEEEEECChhh----------------------------------
Confidence 3459999999985 335567777789888889988888886643
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
+-..|.-|. ++|.|.....++-.+.|+..+.
T Consensus 162 ---------Ip~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 162 ---------IPVTVLSRC-LQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred ---------ccchhhhhe-EEEecCCcCHHHHHHHHHHHHH
Confidence 233455556 6778887777777777665543
No 382
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.02 Score=71.23 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
.+--|++|||+|.+ +....|.|...|+.-++++++|.+||..+.
T Consensus 123 gr~KViIIDEah~L---s~~AaNALLKTLEEPP~~v~FILaTtep~k--------------------------------- 166 (700)
T PRK12323 123 GRFKVYMIDEVHML---TNHAFNAMLKTLEEPPEHVKFILATTDPQK--------------------------------- 166 (700)
T ss_pred CCceEEEEEChHhc---CHHHHHHHHHhhccCCCCceEEEEeCChHh---------------------------------
Confidence 34569999999985 345677788889888899999999997642
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
+...|.-|. +.|.+..++.++-.+.|+..+.
T Consensus 167 ----------LlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 167 ----------IPVTVLSRC-LQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred ----------hhhHHHHHH-HhcccCCCChHHHHHHHHHHHH
Confidence 445566677 7888888888877777765543
No 383
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.51 E-value=0.0053 Score=69.30 Aligned_cols=69 Identities=26% Similarity=0.341 Sum_probs=43.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC----------ceEEEe-ccccccccccch-------------HHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSKWFGEG-------------EKYVKAVFSLAS 992 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~----------~fi~Id-~seL~s~~iG~~-------------E~~I~~lF~~A~ 992 (1138)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+.+-+ ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222222 112211110100 111234666777
Q ss_pred ccCCeEEEEcCCc
Q 001150 993 KIAPSVIFVDEVD 1005 (1138)
Q Consensus 993 k~~PsIIfIDEID 1005 (1138)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999974
No 384
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.51 E-value=0.0063 Score=63.02 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc---eEEEecccc
Q 001150 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 972 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~---fi~Id~seL 972 (1138)
++|-++..+.|...+.. . ....++.++|+|++|+|||+|+++++..+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~----------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A----------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T----------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H----------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35667777777776631 1 12233689999999999999999998877322 777766554
No 385
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0075 Score=70.68 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=32.5
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccc
Q 001150 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSL 470 (1138)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~ 470 (1138)
-|||-||.| -+++.||+-||+-+.+++-|-|.+.|
T Consensus 228 NvLllGPtG--sGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 228 NVLLLGPTG--SGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred cEEEECCCC--CchhHHHHHHHHHhCCCeEEecccch
Confidence 699999999 79999999999999999999998655
No 386
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.012 Score=72.88 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=52.0
Q ss_pred CeEEEEcchhhhhc---CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 001150 658 PFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1138)
Q Consensus 658 p~ILfiddi~~~l~---~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~ 734 (1138)
.-+|+||||+.+.+ ...++++.|....+. +.-+||.|...+.. +.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~P~e------------------------------L~ 425 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRPPKQ------------------------------LV 425 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCChHh------------------------------hh
Confidence 45899999997655 245677777766643 44455655443321 11
Q ss_pred cccccCCCchHHHHHHhhhC--CCeEEEeCCCHHHHHHHHHHhhh
Q 001150 735 RLHDRGKEIPKATKLLTKLF--PNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 735 r~~~~~~~~~~~d~~l~rRF--~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
.+++.|..|| .-.+.|..|+.|.|..||++...
T Consensus 426 ----------~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 426 ----------TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ----------hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1456677788 44568999999999999997653
No 387
>PRK03839 putative kinase; Provisional
Probab=96.50 E-value=0.0024 Score=67.03 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|+|.|+||+|||++++.||+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987765
No 388
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.48 E-value=0.033 Score=60.14 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=38.2
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 001150 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1138)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1138)
.-|||+|=+--.+++...|...+. ....+-|||+||+| .+++.||+++|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G--~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESG--SGKSHLLQAACAAAE 63 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 467888743334566666665542 12346799999999 999999999999863
No 389
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.48 E-value=0.016 Score=66.91 Aligned_cols=101 Identities=16% Similarity=0.306 Sum_probs=57.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCce-EEEecccc-------ccccccchHHHHHHHHHHHhccCCeEEEEcCC
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSI-------TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1004 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~elg~~f-i~Id~seL-------~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEI 1004 (1138)
..+++|+.|||+-|.|||+|.-..-+.+..+- .++.-..+ +..+.|... .+..+-.... ....||.|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHHHH-hcCCEEEeeee
Confidence 44679999999999999999999888874322 11111111 111223321 1111111111 13369999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
+.- ...+--.+.+++.+|+ ...|.+++|+|.
T Consensus 140 ~Vt-----DI~DAMiL~rL~~~Lf----------~~GV~lvaTSN~ 170 (367)
T COG1485 140 EVT-----DIADAMILGRLLEALF----------ARGVVLVATSNT 170 (367)
T ss_pred eec-----ChHHHHHHHHHHHHHH----------HCCcEEEEeCCC
Confidence 732 2233334456666654 257899999996
No 390
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.018 Score=68.20 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=83.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-------CCceEEEeccccc----------cc------cccchHHHHHHHHHHHhc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSIT----------SK------WFGEGEKYVKAVFSLASK 993 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-------g~~fi~Id~seL~----------s~------~iG~~E~~I~~lF~~A~k 993 (1138)
..++|+||+|+|||+.+..+|..+ +..+..+++..+. .. ........+...+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-- 252 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-- 252 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--
Confidence 579999999999999999888765 2344444433220 11 1111112233333332
Q ss_pred cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCC----ceEEec
Q 001150 994 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP----RRLMVN 1069 (1138)
Q Consensus 994 ~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd----~~I~v~ 1069 (1138)
....+|+||.+.+... .... +.++...++.... +...++|+.+|.....+... ..+|. ..+.|.
T Consensus 253 ~~~DlVLIDTaGr~~~------~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~-~~~~~~~~~~~~I~T 320 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK------DFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEI-FHQFSPFSYKTVIFT 320 (388)
T ss_pred CCCCEEEEcCCCCCcc------CHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHH-HHHhcCCCCCEEEEE
Confidence 3568999999986621 1111 2333333333321 12567888888777777643 34441 345555
Q ss_pred CCCHHHHH-HHHHHHHhh----------CCCCC---cccHHHHHHHcCCCcHHH
Q 001150 1070 LPDAPNRA-KILQVILAK----------EDLSP---DVDFDAIANMTDGYSGSD 1109 (1138)
Q Consensus 1070 lPd~eeR~-eIL~~ll~k----------~~l~~---dvdl~~LA~~teGySgaD 1109 (1138)
..|...+. .++...... ..+.. ..+...+++..-||+-++
T Consensus 321 KlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 321 KLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred eccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 55555443 333333321 11211 234566777777776543
No 391
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.058 Score=65.72 Aligned_cols=75 Identities=9% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
..=|++|||+|.+ +.+..+.|...|+.-+..+++|.++|..+
T Consensus 116 ~~KVvIIDEah~L---s~~A~NaLLK~LEePp~~v~fIlatte~~----------------------------------- 157 (491)
T PRK14964 116 KFKVYIIDEVHML---SNSAFNALLKTLEEPAPHVKFILATTEVK----------------------------------- 157 (491)
T ss_pred CceEEEEeChHhC---CHHHHHHHHHHHhCCCCCeEEEEEeCChH-----------------------------------
Confidence 3459999999974 34567788889999889999999887543
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
++.+.|..|. +.|++..++.++....++....+
T Consensus 158 --------Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 158 --------KIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred --------HHHHHHHHhh-eeeecccccHHHHHHHHHHHHHH
Confidence 2566788888 89999999988888777765543
No 392
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.037 Score=67.75 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
..+-||+|||+|.+ +.+..+.|...|+.-+..+++|.+++....
T Consensus 115 ~~~kVVIIDEad~l---s~~a~naLLk~LEep~~~t~~Il~t~~~~k--------------------------------- 158 (504)
T PRK14963 115 GGRKVYILDEAHMM---SKSAFNALLKTLEEPPEHVIFILATTEPEK--------------------------------- 158 (504)
T ss_pred CCCeEEEEECcccc---CHHHHHHHHHHHHhCCCCEEEEEEcCChhh---------------------------------
Confidence 35669999999974 345566777788877777777777765432
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+...|..|. ..|.+..|+.++....++..+.+
T Consensus 159 ----------l~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 159 ----------MPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred ----------CChHHhcce-EEEEecCCCHHHHHHHHHHHHHH
Confidence 344566667 68999999999888888765543
No 393
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.44 E-value=0.0029 Score=63.94 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
+|+|+|+||+|||++|+.||..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988655
No 394
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.43 E-value=0.042 Score=63.52 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=54.0
Q ss_pred CeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 001150 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 737 (1138)
Q Consensus 658 p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~ 737 (1138)
.-||+|||+|.+- .+..+.|...|+..++.+++|..++..+
T Consensus 118 ~~vviidea~~l~---~~~~~~Ll~~le~~~~~~~lIl~~~~~~------------------------------------ 158 (355)
T TIGR02397 118 YKVYIIDEVHMLS---KSAFNALLKTLEEPPEHVVFILATTEPH------------------------------------ 158 (355)
T ss_pred ceEEEEeChhhcC---HHHHHHHHHHHhCCccceeEEEEeCCHH------------------------------------
Confidence 3499999999852 3456667777887778887777665432
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 738 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 738 ~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
++.+.|.+|+ ..+++..|+.++...+++..+.+
T Consensus 159 -------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 159 -------KIPATILSRC-QRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred -------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 1456788888 78999999998888888765543
No 395
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.42 E-value=0.0061 Score=71.68 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=44.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC---ce---EEEeccc---------------cccccccchHHHHH---HHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA---NF---INISMSS---------------ITSKWFGEGEKYVK---AVFSLAS 992 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~---~f---i~Id~se---------------L~s~~iG~~E~~I~---~lF~~A~ 992 (1138)
...||+||||+|||+|++.|++.... .+ +.+...- +.+.+...++..++ .++..|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999988732 22 2221110 12222233333332 2333333
Q ss_pred c----cCCeEEEEcCCcccc
Q 001150 993 K----IAPSVIFVDEVDSML 1008 (1138)
Q Consensus 993 k----~~PsIIfIDEID~L~ 1008 (1138)
. ....|||||||.+|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 2 256799999999986
No 396
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.41 E-value=0.017 Score=60.79 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=46.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc-ccc----------------chHHHHHHHHHHHhccCCeEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFG----------------EGEKYVKAVFSLASKIAPSVIF 1000 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~-~iG----------------~~E~~I~~lF~~A~k~~PsIIf 1000 (1138)
.+|+.|+||+|||++|..++..++.+++.+........ +.. +....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998878777665432111 000 0001233333221 23467999
Q ss_pred EcCCccccc
Q 001150 1001 VDEVDSMLG 1009 (1138)
Q Consensus 1001 IDEID~L~~ 1009 (1138)
||-+..|..
T Consensus 82 ID~Lt~~~~ 90 (170)
T PRK05800 82 VDCLTTWVT 90 (170)
T ss_pred ehhHHHHHH
Confidence 999998864
No 397
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.41 E-value=0.03 Score=64.17 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=34.5
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 001150 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1138)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1138)
+|++|-. .++.+..|..++- . ...+.+||+||+| .++++||+|+|++..
T Consensus 13 ~~~~~~g--~~~~~~~L~~~~~----~-----------~~~~~lll~Gp~G--tGKT~la~~~~~~l~ 61 (337)
T PRK12402 13 LLEDILG--QDEVVERLSRAVD----S-----------PNLPHLLVQGPPG--SGKTAAVRALARELY 61 (337)
T ss_pred cHHHhcC--CHHHHHHHHHHHh----C-----------CCCceEEEECCCC--CCHHHHHHHHHHHhc
Confidence 4666543 3666666665442 1 1123599999999 999999999999874
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.37 E-value=0.022 Score=61.39 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=41.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceE-------------EEeccccccc---cccchHHHHHHHHHHHhccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFI-------------NISMSSITSK---WFGEGEKYVKAVFSLASKIA 995 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi-------------~Id~seL~s~---~iG~~E~~I~~lF~~A~k~~ 995 (1138)
.-++|.||.|+|||+|.+.|+... |.++- .+...+-... ........+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 468999999999999999998533 44321 1111110000 00111133566666666557
Q ss_pred CeEEEEcCCc
Q 001150 996 PSVIFVDEVD 1005 (1138)
Q Consensus 996 PsIIfIDEID 1005 (1138)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 9999999975
No 399
>PRK10536 hypothetical protein; Provisional
Probab=96.34 E-value=0.02 Score=64.12 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 001150 938 GILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~e 959 (1138)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 400
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.34 E-value=0.021 Score=69.09 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc------cccc--------hHHHHHHHHHHHhccCC
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAP 996 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~------~iG~--------~E~~I~~lF~~A~k~~P 996 (1138)
.+..-+||.|+||+|||+|+..+|..+ +.++++++..+-... -+|. .+..+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 343568999999999999999998766 457777776432111 0111 11234556666677789
Q ss_pred eEEEEcCCccccc
Q 001150 997 SVIFVDEVDSMLG 1009 (1138)
Q Consensus 997 sIIfIDEID~L~~ 1009 (1138)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998753
No 401
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.34 E-value=0.026 Score=62.26 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
.+...+||+||||+|||++|..++.+. |-+.+.++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 344679999999999999998876553 556665553
No 402
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.014 Score=62.90 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el 960 (1138)
=|+|+|+||+|||++|+.||+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 37899999999999999999999
No 403
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.031 Score=69.71 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=53.9
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
..-|++|||+|.+ . .+..+.|...|+..++.+.+|.+++....
T Consensus 118 k~KV~IIDEVh~L-S--~~A~NALLKtLEEPP~~v~FILaTtd~~k---------------------------------- 160 (702)
T PRK14960 118 RFKVYLIDEVHML-S--THSFNALLKTLEEPPEHVKFLFATTDPQK---------------------------------- 160 (702)
T ss_pred CcEEEEEechHhc-C--HHHHHHHHHHHhcCCCCcEEEEEECChHh----------------------------------
Confidence 4469999999974 2 34667788889988898888888864431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+...|..|. ..|.+..++.++-.+.++..+.+
T Consensus 161 ---------Ip~TIlSRC-q~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 161 ---------LPITVISRC-LQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred ---------hhHHHHHhh-heeeccCCCHHHHHHHHHHHHHH
Confidence 233455667 78888888888777777655543
No 404
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.14 Score=56.95 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=89.5
Q ss_pred ceEEEECCCC-CCHHHHHHHHHHHhCCc---------eEEEeccccc---cccccchHHHHHHHHHHHh----ccCCeEE
Q 001150 937 KGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLAS----KIAPSVI 999 (1138)
Q Consensus 937 ~gILL~GPPG-TGKT~LArALA~elg~~---------fi~Id~seL~---s~~iG~~E~~I~~lF~~A~----k~~PsII 999 (1138)
+..||.|..+ +||..++.-++..+-.. ++.+....-. +..+ .-..++++-..+. .....|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 5799999998 99999999888877322 2222211000 0111 1234455544443 3356799
Q ss_pred EEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHH
Q 001150 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKI 1079 (1138)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eI 1079 (1138)
+|+++|.|- ....|.||..++. ++.++++|.+|..+..+.+.+++|+ ..+.+..|....-.++
T Consensus 94 II~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 94 IIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHH
Confidence 999999882 2344566666655 3467888888889999999999999 8899999998777777
Q ss_pred HHHHHhhC
Q 001150 1080 LQVILAKE 1087 (1138)
Q Consensus 1080 L~~ll~k~ 1087 (1138)
....+...
T Consensus 157 ~~~~~~p~ 164 (263)
T PRK06581 157 YSQFIQPI 164 (263)
T ss_pred HHHhcccc
Confidence 77666543
No 405
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.31 E-value=0.026 Score=61.41 Aligned_cols=125 Identities=17% Similarity=0.277 Sum_probs=69.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEecccc-----------------------------cccc----c
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI-----------------------------TSKW----F 977 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL-----------------------------~s~~----i 977 (1138)
+...+|+.||||+|||.|+.+++.+. |-+++.++..+- .... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 33569999999999999999877443 677777665221 0000 1
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC----CCC
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR----PFD 1053 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~----p~~ 1053 (1138)
...+..+..+...+....+.+++||.+..+. ....+ ...+..+..+...+.. ..+.+|.|... ...
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~~~---~~~r~~l~~l~~~l~~------~~~t~llt~~~~~~~~~~ 167 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALL-LYDDP---EELRRFLRALIKFLKS------RGVTTLLTSEMPSGSEDD 167 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSSSG---GGHHHHHHHHHHHHHH------TTEEEEEEEEESSSSSSS
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcCCH---HHHHHHHHHHHHHHHH------CCCEEEEEEccccCcccc
Confidence 1223344556666677788999999999883 22221 2234445555555433 23344444431 122
Q ss_pred CcHHHHh-cCCceEEec
Q 001150 1054 LDEAVIR-RLPRRLMVN 1069 (1138)
Q Consensus 1054 Ld~aLlr-RFd~~I~v~ 1069 (1138)
....+.. -+|.+|.+.
T Consensus 168 ~~~~i~~~l~D~vI~L~ 184 (226)
T PF06745_consen 168 GTFGIEHYLADGVIELR 184 (226)
T ss_dssp SSTSHHHHHSSEEEEEE
T ss_pred cccchhhhcccEEEEEE
Confidence 3334444 456666554
No 406
>PRK00625 shikimate kinase; Provisional
Probab=96.31 E-value=0.0038 Score=65.89 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|+|+|.||+|||++++.+|+.++++|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 407
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.31 E-value=0.0034 Score=74.38 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccccc
Q 001150 402 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 471 (1138)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~ 471 (1138)
+..|..|..|++-|.+...+..-.+ -.-.+..|||.||+| .++++|||+||+.++++++.+|++.|.
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhc
Confidence 8999999999999977665432111 111347899999999 999999999999999999999999885
No 408
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.049 Score=67.60 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
...-|++|||+|.+ +.+..+.|...|+..+..+++|.+++.++.
T Consensus 118 ~~~kViIIDE~~~L---t~~a~naLLKtLEepp~~~ifIlatt~~~k--------------------------------- 161 (559)
T PRK05563 118 AKYKVYIIDEVHML---STGAFNALLKTLEEPPAHVIFILATTEPHK--------------------------------- 161 (559)
T ss_pred CCeEEEEEECcccC---CHHHHHHHHHHhcCCCCCeEEEEEeCChhh---------------------------------
Confidence 34569999999985 345677788889988899999998875532
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
+...|..|. +.|++..|+.++-...++..+.
T Consensus 162 ----------i~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 162 ----------IPATILSRC-QRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred ----------CcHHHHhHh-eEEecCCCCHHHHHHHHHHHHH
Confidence 345567777 7889999988877777765543
No 409
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.055 Score=67.85 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhcc-cCCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCc
Q 001150 642 LINTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSN 720 (1138)
Q Consensus 642 ~i~~L~ev~~~~~-~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~ 720 (1138)
.|+.+.+.+.... ...--|++|||+|.+ +.+..+.|...|+.-++.+++|++++..+.
T Consensus 105 ~IReii~~a~~~p~~~~~KViIIDEad~L---t~~a~naLLK~LEePp~~tvfIL~t~~~~~------------------ 163 (620)
T PRK14948 105 NIRELIERAQFAPVQARWKVYVIDECHML---STAAFNALLKTLEEPPPRVVFVLATTDPQR------------------ 163 (620)
T ss_pred HHHHHHHHHhhChhcCCceEEEEECcccc---CHHHHHHHHHHHhcCCcCeEEEEEeCChhh------------------
Confidence 3455554443211 123359999999985 346778888899988899999998874421
Q ss_pred hhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 001150 721 QTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1138)
Q Consensus 721 ~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~ 774 (1138)
+.+.|..|. +.|++..+..++-...+..
T Consensus 164 -------------------------llpTIrSRc-~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 164 -------------------------VLPTIISRC-QRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred -------------------------hhHHHHhhe-eEEEecCCCHHHHHHHHHH
Confidence 445677777 7888887877665555443
No 410
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.013 Score=68.96 Aligned_cols=108 Identities=21% Similarity=0.319 Sum_probs=58.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----C-CceEEEeccccc----------cccccch------HHHHHHHHHHHhccC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSIT----------SKWFGEG------EKYVKAVFSLASKIA 995 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g-~~fi~Id~seL~----------s~~iG~~------E~~I~~lF~~A~k~~ 995 (1138)
..++|.||+|+|||+++..||..+ | ..+..+....+. .+..|-+ ...+...+. +...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--ELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--HhcC
Confidence 568999999999999999999764 3 234444433321 1111111 111122222 2234
Q ss_pred CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHH
Q 001150 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAV 1058 (1138)
Q Consensus 996 PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aL 1058 (1138)
..+|+||.....- . ...+.+.+..+..... ....++|+.+|+..+.+...+
T Consensus 216 ~DlVLIDTaG~~~------~-----d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 216 KHMVLIDTIGMSQ------R-----DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCEEEEcCCCCCc------c-----cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 5899999986431 0 1112233333333221 125688888888887777543
No 411
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.23 E-value=0.0095 Score=69.42 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=45.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CceEEEecc-ccc---------cccccchHHHHHHHHHHHhccCCeEEEEc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg----~~fi~Id~s-eL~---------s~~iG~~E~~I~~lF~~A~k~~PsIIfID 1002 (1138)
..+||.||+|+|||+++++++..+. ..++.+.-+ ++. ...+|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4689999999999999999998774 234433211 111 11122222234566677778899999999
Q ss_pred CCc
Q 001150 1003 EVD 1005 (1138)
Q Consensus 1003 EID 1005 (1138)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 412
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0039 Score=63.90 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.+||++|-||||||+++.+||..++++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999988764
No 413
>PRK14532 adenylate kinase; Provisional
Probab=96.22 E-value=0.0043 Score=65.46 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.||||+|||++|+.||+.+|++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998766543
No 414
>PRK06217 hypothetical protein; Validated
Probab=96.21 E-value=0.0047 Score=65.19 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|+|.|++|+|||++|++|+..++++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887765
No 415
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.21 E-value=0.015 Score=55.88 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el 960 (1138)
+++++||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888777666
No 416
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.19 Score=59.15 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=65.3
Q ss_pred CeEEEEcCCccccc----CCCCc-chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec--CCC--------------CCC
Q 001150 996 PSVIFVDEVDSMLG----RRENP-GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT--NRP--------------FDL 1054 (1138)
Q Consensus 996 PsIIfIDEID~L~~----~r~~~-~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT--N~p--------------~~L 1054 (1138)
|-++.||++..|+. ++... ......-.+.+.++..+.+-.. ...++.++. ..+ ..+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt---~g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWT---FGSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccc---cceEEEEecccccchhccccccccCCchHhc
Confidence 56888999999997 22211 1111112333444444443222 123333333 111 133
Q ss_pred cHHHHh---cCCceEEecCCCHHHHHHHHHHHHhhC----CCCCcccHHHHHHHcCCCcHHHHHHHHH
Q 001150 1055 DEAVIR---RLPRRLMVNLPDAPNRAKILQVILAKE----DLSPDVDFDAIANMTDGYSGSDLKNLCV 1115 (1138)
Q Consensus 1055 d~aLlr---RFd~~I~v~lPd~eeR~eIL~~ll~k~----~l~~dvdl~~LA~~teGySgaDL~~L~~ 1115 (1138)
++.... -| ..|++...+.+|-..++..+++.. .+..+..+.++--++ +.+++.++.+|.
T Consensus 393 g~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 393 GEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred CccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 333333 45 457888899999999999988763 333455677777777 457788888774
No 417
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.032 Score=66.19 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 400 LSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 400 lse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
+....|.-+++-..-.++.+++. .+.=-+=-|+-||+|||| +++..|+=|+|+|++=..-.|.
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~Y--krvGkawKRGYLLYGPPG--TGKSS~IaAmAn~L~ydIydLe 267 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDFY--KRVGKAWKRGYLLYGPPG--TGKSSFIAAMANYLNYDIYDLE 267 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchHH--HhcCcchhccceeeCCCC--CCHHHHHHHHHhhcCCceEEee
Confidence 35888999999999999999984 443445567899999999 9999999999999875544433
No 418
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.20 E-value=0.012 Score=63.82 Aligned_cols=37 Identities=41% Similarity=0.551 Sum_probs=28.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
-++|+||+|||||.+|-++|+..|.|++..|.-....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 4789999999999999999999999999999766544
No 419
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.19 E-value=0.0044 Score=64.83 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=27.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
|+|+||||+|||++|+.||..+++. .+++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 7899999999999999999999864 45555544
No 420
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.19 E-value=0.22 Score=57.43 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=65.1
Q ss_pred CCeEEEEcCCcccccCCCC-----cchHHHHHHHHHHHHHHhcCCCccCCCCEE-EEEecCC---CC--CCcHHHHhcCC
Q 001150 995 APSVIFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDTERIL-VLAATNR---PF--DLDEAVIRRLP 1063 (1138)
Q Consensus 995 ~PsIIfIDEID~L~~~r~~-----~~~~~al~~il~~LL~~Ldgl~~~~~~~VL-VIaTTN~---p~--~Ld~aLlrRFd 1063 (1138)
.|.++-||++..|+....- ...+...-.+...|+..+.+-..-.+..++ .+++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 4778889999999865211 112223334555566554443332223332 2555432 22 44555544322
Q ss_pred ---------------------ceEEecCCCHHHHHHHHHHHHhhCCCCC----cccHHHHHHHcCCCcHHHHHH
Q 001150 1064 ---------------------RRLMVNLPDAPNRAKILQVILAKEDLSP----DVDFDAIANMTDGYSGSDLKN 1112 (1138)
Q Consensus 1064 ---------------------~~I~v~lPd~eeR~eIL~~ll~k~~l~~----dvdl~~LA~~teGySgaDL~~ 1112 (1138)
..|.++..+.+|-..+++.+....-+.. ..-.+.+...+.| +++++..
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G-Np~el~k 308 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG-NPRELEK 308 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-CHHHhcc
Confidence 2688999999999999999887644432 2223444444444 6666653
No 421
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.19 E-value=0.023 Score=59.85 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=45.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc----------------c-ccchHHHHHHHHHHHhccCCeEEEE
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------W-FGEGEKYVKAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~----------------~-iG~~E~~I~~lF~~A~k~~PsIIfI 1001 (1138)
+|+.|++|+|||++|..++...+.+++++....-... | ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999888778877765432111 0 0011122333332221 4679999
Q ss_pred cCCcccccC
Q 001150 1002 DEVDSMLGR 1010 (1138)
Q Consensus 1002 DEID~L~~~ 1010 (1138)
|-+..|...
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 999988744
No 422
>PLN03025 replication factor C subunit; Provisional
Probab=96.19 E-value=0.03 Score=64.51 Aligned_cols=75 Identities=8% Similarity=0.122 Sum_probs=50.0
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
..-||+|||+|.+-. +.-+.|...++..+....+|-.+|....
T Consensus 99 ~~kviiiDE~d~lt~---~aq~aL~~~lE~~~~~t~~il~~n~~~~---------------------------------- 141 (319)
T PLN03025 99 RHKIVILDEADSMTS---GAQQALRRTMEIYSNTTRFALACNTSSK---------------------------------- 141 (319)
T ss_pred CeEEEEEechhhcCH---HHHHHHHHHHhcccCCceEEEEeCCccc----------------------------------
Confidence 456999999999643 3345566777766555444444443321
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+.++|..|. ..|.+..|++++....++....+
T Consensus 142 ---------i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 142 ---------IIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred ---------cchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH
Confidence 345566677 68999999999888888765543
No 423
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.18 E-value=0.0074 Score=67.49 Aligned_cols=97 Identities=22% Similarity=0.371 Sum_probs=59.4
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEec-ccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~-seL 972 (1138)
..+++++.......+.+.+++.... +....+|+.|++|+|||+++++++..+. ..++.+.- .++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4466777666555555555554211 1125799999999999999999999883 34444432 222
Q ss_pred ccc------ccc-chHHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 973 TSK------WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 973 ~s~------~iG-~~E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
.-. +.. ........++..+.+..|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 111 233456778888889999999999996
No 424
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.15 E-value=0.01 Score=63.93 Aligned_cols=128 Identities=23% Similarity=0.312 Sum_probs=63.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc--------------cc-c----ccc-chHHHHHHHHHHHhc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI--------------TS-K----WFG-EGEKYVKAVFSLASK 993 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL--------------~s-~----~iG-~~E~~I~~lF~~A~k 993 (1138)
+-++|.||+|+|||+.+..||..+ +..+--+++..+ .+ . ... .+...+.+.++....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 568999999999999888777666 444433333221 11 0 001 122334455555555
Q ss_pred cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHH--HHhcC-CceEEecC
Q 001150 994 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA--VIRRL-PRRLMVNL 1070 (1138)
Q Consensus 994 ~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~a--LlrRF-d~~I~v~l 1070 (1138)
....+||||-..+. +.....+..+ ..++..+. ....++|+.++...+.++.. +.+.| -..+.+..
T Consensus 82 ~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~~-----~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 82 KGYDLVLIDTAGRS------PRDEELLEEL-KKLLEALN-----PDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp TTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHHS-----SSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred cCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhcC-----CccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 56689999977533 1222222222 23333331 12345666666666655532 22233 12344555
Q ss_pred CCHHHH
Q 001150 1071 PDAPNR 1076 (1138)
Q Consensus 1071 Pd~eeR 1076 (1138)
.|...+
T Consensus 150 lDet~~ 155 (196)
T PF00448_consen 150 LDETAR 155 (196)
T ss_dssp TTSSST
T ss_pred ecCCCC
Confidence 554433
No 425
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.14 E-value=0.019 Score=70.04 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=61.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEec-ccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~-seL 972 (1138)
..++++++-..+..+.|+.++.. +..-+|++||+|+|||++..++...+. ..++.+.- .++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45778888777777777776642 223479999999999999998887773 34555432 122
Q ss_pred ccc-----cccc-hHHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 973 TSK-----WFGE-GEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 973 ~s~-----~iG~-~E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
.-. .+.. .......+...+-+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 111 1111 11234456667778899999999995
No 426
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.13 E-value=0.039 Score=60.49 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc--------------ccc-------------------cc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------SKW-------------------FG 978 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~--------------s~~-------------------iG 978 (1138)
+...++++|+||+|||+++.+++.+. +.+++.++..+-. ..+ ..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 33568999999999999999997654 6666666643210 000 00
Q ss_pred chHHHHHHHHHHHhccCCeEEEEcCCcccc
Q 001150 979 EGEKYVKAVFSLASKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 979 ~~E~~I~~lF~~A~k~~PsIIfIDEID~L~ 1008 (1138)
..+..+..+...+....+.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012233444445555688999999998664
No 427
>PRK09354 recA recombinase A; Provisional
Probab=96.12 E-value=0.033 Score=65.01 Aligned_cols=73 Identities=26% Similarity=0.319 Sum_probs=49.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc----------------ccccccchHHHHHHHHHHHhccCCe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 997 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL----------------~s~~iG~~E~~I~~lF~~A~k~~Ps 997 (1138)
.-++|+||+|+|||+||-.++... |...+.++...- .-......+..+..+-..++...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 457899999999999999877554 777777776431 1111112233333333445566789
Q ss_pred EEEEcCCccccc
Q 001150 998 VIFVDEVDSMLG 1009 (1138)
Q Consensus 998 IIfIDEID~L~~ 1009 (1138)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999998875
No 428
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.12 E-value=0.011 Score=67.89 Aligned_cols=107 Identities=21% Similarity=0.372 Sum_probs=66.1
Q ss_pred CCCCceeeeeccCCCCcceeeccCCCCCCCC-CC---CCCCCCccc-ccccccccccCCCchhhHHHHHHHHHHHHhhcc
Q 001150 580 GTRGKVALLFEDNPSSKIGVRFDKPIPDGVD-LG---GQCEGGHGF-FCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 654 (1138)
Q Consensus 580 g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~-l~---~~c~~~~~f-f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~ 654 (1138)
|++|-+.-..|-|.-. -.+|=+|||+||| || ..-+..++| |..-.|- ..=+.| ++.+||.+..+.
T Consensus 148 ~q~gllrs~ieq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt--~a~t~d------vR~ife~aq~~~ 217 (554)
T KOG2028|consen 148 GQDGLLRSLIEQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT--NAKTND------VRDIFEQAQNEK 217 (554)
T ss_pred CcchHHHHHHHcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc--ccchHH------HHHHHHHHHHHH
Confidence 3444443344433211 2688999999999 44 333334444 4433332 112233 677777776654
Q ss_pred c--CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCC
Q 001150 655 R--SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 701 (1138)
Q Consensus 655 ~--~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d 701 (1138)
. ....||||||||.+=.-++|. |.++.+. |-|.+|||||-..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~---fLP~VE~--G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDT---FLPHVEN--GDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhc---ccceecc--CceEEEecccCCC
Confidence 4 568999999999965555544 5566655 9999999999654
No 429
>PRK06762 hypothetical protein; Provisional
Probab=96.09 E-value=0.015 Score=60.02 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
.-++|+|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 3588999999999999999999997667777665543
No 430
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.09 E-value=0.0055 Score=61.21 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
|.|.|+||+|||++|+.||..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 431
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0064 Score=64.55 Aligned_cols=33 Identities=39% Similarity=0.743 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
.|+|.||||+||||+|+.||+. +++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 5899999999999999999999 55556665444
No 432
>PRK10436 hypothetical protein; Provisional
Probab=96.06 E-value=0.022 Score=68.94 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=62.3
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEec-ccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~-seL 972 (1138)
..++++++-.....+.+++++. .|..-+|++||+|+|||++..++..+++ .+++.+.- .++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 4578888877777777777664 2324589999999999998888777763 33444332 122
Q ss_pred ccc-----cccc-hHHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 973 TSK-----WFGE-GEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 973 ~s~-----~iG~-~E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
.-. .++. .......+...+-+..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 111 1111 11235667777788899999999995
No 433
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.06 E-value=0.039 Score=59.72 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---C------CceEEEeccc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 971 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g------~~fi~Id~se 971 (1138)
+..-+.|+||||+|||+|+..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33458999999999999999998764 3 5667777643
No 434
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.06 E-value=0.0056 Score=62.05 Aligned_cols=28 Identities=43% Similarity=0.782 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
++|+|+||+|||++|+.++..+++.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 435
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.05 E-value=0.022 Score=67.74 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=37.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.++++.||+|||||+||.+++... | -.+..+.++.... . ..+.. -....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCC
Confidence 579999999999999999988772 4 1122222222110 0 11111 124689999999976
No 436
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.04 E-value=0.05 Score=60.96 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
+..-+|++|+||+|||++|.++|... |-+++.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33558999999999999999987654 556655554
No 437
>PRK08233 hypothetical protein; Provisional
Probab=96.02 E-value=0.055 Score=56.25 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CceEEEec
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg-~~fi~Id~ 969 (1138)
.-|.|.|+||+|||++|+.|+..++ ..++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3478899999999999999999985 44544443
No 438
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.01 E-value=0.018 Score=69.32 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEE---E
Q 001150 891 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---I 967 (1138)
Q Consensus 891 i~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~---I 967 (1138)
.+......++++++......+.+.+++. +|..-+|++||+|+|||+...++..+++.+... +
T Consensus 228 l~~~~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 228 LDKDQVILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred eccccccCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 3333346678888888888888887774 343458899999999999999999999654443 2
Q ss_pred ec-cccccccccch------HHHHHHHHHHHhccCCeEEEEcCCcc
Q 001150 968 SM-SSITSKWFGEG------EKYVKAVFSLASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 968 d~-seL~s~~iG~~------E~~I~~lF~~A~k~~PsIIfIDEID~ 1006 (1138)
.- -++.-.-+... .-.....++..-++.|.||++.||-.
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 21 11111101110 01234566667788999999999963
No 439
>PRK14531 adenylate kinase; Provisional
Probab=96.01 E-value=0.0069 Score=64.00 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|+|+||||+|||++++.||..+|++++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999998876553
No 440
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.01 E-value=0.006 Score=64.19 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=25.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
|+|+|+||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999988766543
No 441
>PRK13948 shikimate kinase; Provisional
Probab=96.01 E-value=0.0075 Score=64.23 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
+++..|+|.|.+|+|||++++.||+.++.+|+..|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45578999999999999999999999999999666
No 442
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.01 E-value=0.059 Score=58.72 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~ 958 (1138)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 443
>PF13479 AAA_24: AAA domain
Probab=95.99 E-value=0.023 Score=61.66 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=38.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCce-EEEecccc-cccc-----c-cchHHHHHHHHHHH--hccCCeEEEEcCCcc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSI-TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~f-i~Id~seL-~s~~-----i-G~~E~~I~~lF~~A--~k~~PsIIfIDEID~ 1006 (1138)
..+||||+||+|||++|..+ +-++ +.++.... +..+ + =..-..+.+++..+ ......+|+||.|+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 47999999999999999888 3222 22322211 0000 0 01122334444332 345678999998887
Q ss_pred cc
Q 001150 1007 ML 1008 (1138)
Q Consensus 1007 L~ 1008 (1138)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 53
No 444
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.052 Score=64.25 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=44.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc-------ccc---------ccchHHHHHHHHHHHhc-cCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------SKW---------FGEGEKYVKAVFSLASK-IAP 996 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~-------s~~---------iG~~E~~I~~lF~~A~k-~~P 996 (1138)
+.|+|.||+|+|||+++..||..+ +..+..+++..+. ..| ....+..+......+.. ...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 679999999999999999999877 4455555543221 000 01223344444444443 246
Q ss_pred eEEEEcCCccc
Q 001150 997 SVIFVDEVDSM 1007 (1138)
Q Consensus 997 sIIfIDEID~L 1007 (1138)
.+||||-..+.
T Consensus 322 DvVLIDTaGRs 332 (436)
T PRK11889 322 DYILIDTAGKN 332 (436)
T ss_pred CEEEEeCcccc
Confidence 89999987654
No 445
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.96 E-value=0.051 Score=63.60 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=24.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~el 960 (1138)
..|++|++|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4567999999999999999998877554
No 446
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.96 E-value=0.06 Score=60.07 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~ 969 (1138)
+..-++|.|+||+|||+++.++|..+ +.+++.+++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 33568999999999999999887664 667766665
No 447
>PRK05973 replicative DNA helicase; Provisional
Probab=95.96 E-value=0.054 Score=60.10 Aligned_cols=36 Identities=39% Similarity=0.543 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
.+..-+||.|+||+|||+++-.+|.+. |.+++.+++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 444568999999999999999887755 766666654
No 448
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.078 Score=66.31 Aligned_cols=72 Identities=10% Similarity=0.175 Sum_probs=53.1
Q ss_pred eEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 001150 659 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 738 (1138)
Q Consensus 659 ~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~ 738 (1138)
-|++|||+|.+ +.+..|.|...|+.-++.+++|.+||....
T Consensus 126 KV~IIDEvh~L---s~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k------------------------------------ 166 (618)
T PRK14951 126 KVFMIDEVHML---TNTAFNAMLKTLEEPPEYLKFVLATTDPQK------------------------------------ 166 (618)
T ss_pred eEEEEEChhhC---CHHHHHHHHHhcccCCCCeEEEEEECCchh------------------------------------
Confidence 49999999984 345577788889888899988888875431
Q ss_pred cCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 739 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 739 ~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
+-..|..|. ..|.+..++.++....++..+.
T Consensus 167 -------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 167 -------VPVTVLSRC-LQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred -------hhHHHHHhc-eeeecCCCCHHHHHHHHHHHHH
Confidence 233466667 7888988888877777765543
No 449
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.94 E-value=0.11 Score=62.35 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=47.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc----------c-----cccc-----chHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------S-----KWFG-----EGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~----------s-----~~iG-----~~E~~I~~lF~~A 991 (1138)
++.-|+|+|++|+|||+++..||..+ |..+.-+++..+. . .++. .+.......+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999877 6677666664321 0 0010 1112233455556
Q ss_pred hccCCeEEEEcCCccc
Q 001150 992 SKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L 1007 (1138)
+.....+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999977644
No 450
>PRK14530 adenylate kinase; Provisional
Probab=95.94 E-value=0.0074 Score=65.38 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.||||+|||++|+.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877643
No 451
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.94 E-value=0.064 Score=58.70 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~ 969 (1138)
.+..-++|.|+||+|||+++..+|... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344568999999999999998887655 778777774
No 452
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.072 Score=66.40 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=51.8
Q ss_pred eEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 001150 659 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 738 (1138)
Q Consensus 659 ~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~ 738 (1138)
=|++|||+|.+- .+..|.|...|+..++.+++|.+||..+.
T Consensus 121 KVvIIdev~~Lt---~~a~naLLk~LEepp~~~~fIl~t~~~~k------------------------------------ 161 (576)
T PRK14965 121 KIFIIDEVHMLS---TNAFNALLKTLEEPPPHVKFIFATTEPHK------------------------------------ 161 (576)
T ss_pred eEEEEEChhhCC---HHHHHHHHHHHHcCCCCeEEEEEeCChhh------------------------------------
Confidence 389999999742 45678899999998999999998876532
Q ss_pred cCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 739 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 739 ~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
+-+.|..|. ..|++..++.++-...+...+
T Consensus 162 -------l~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 162 -------VPITILSRC-QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred -------hhHHHHHhh-hhhhcCCCCHHHHHHHHHHHH
Confidence 445566666 678887777766665555433
No 453
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.91 E-value=0.031 Score=60.91 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEEeccc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 971 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---------g~~fi~Id~se 971 (1138)
+..-+.|+||||+|||+++..+|... +..+++++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33458999999999999999998553 25677777644
No 454
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.90 E-value=0.016 Score=66.30 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=47.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEecc-cc-------ccccccchHHHHHHHHHHHhccCCeEEEEcC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMS-SI-------TSKWFGEGEKYVKAVFSLASKIAPSVIFVDE 1003 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~s-eL-------~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDE 1003 (1138)
.++|+.|++|+|||+++++++..+ +..++.+.-. ++ +.-..+........++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 579999999999999999999886 2334333221 11 1111111222567788888999999999999
Q ss_pred Cc
Q 001150 1004 VD 1005 (1138)
Q Consensus 1004 ID 1005 (1138)
|-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 95
No 455
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.89 E-value=0.0073 Score=63.26 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=30.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
+-|+|.|+||+|||++|++|+..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 358999999999999999999999888776655443
No 456
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.86 E-value=0.031 Score=61.98 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL 972 (1138)
|+|+|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999988 567777765444
No 457
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.0073 Score=63.63 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.+|+|.|++|+|||++.++||+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998876
No 458
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.83 E-value=0.0094 Score=61.83 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=28.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.++|.|++|+|||++++.||..+|++|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999988665
No 459
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.82 E-value=0.019 Score=67.67 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=46.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CceEEEecc-ccc-----------cccccchHHHHHHHHHHHhccCCeEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVI 999 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg-----~~fi~Id~s-eL~-----------s~~iG~~E~~I~~lF~~A~k~~PsII 999 (1138)
..+|++||+|+|||+++++++..+. ..++.+.-+ ++. ...+|............+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999988772 345554422 211 01112222234567777888899999
Q ss_pred EEcCCc
Q 001150 1000 FVDEVD 1005 (1138)
Q Consensus 1000 fIDEID 1005 (1138)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999995
No 460
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.82 E-value=0.0071 Score=62.24 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 461
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.82 E-value=0.35 Score=55.19 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC------CceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg------~~fi~Id~ 969 (1138)
++..|.|+|+=|+|||++.+.+-+.+. ..++++++
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~ 59 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNA 59 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcc
Confidence 446799999999999999999988883 33555554
No 462
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.81 E-value=0.021 Score=63.72 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA 962 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~ 962 (1138)
..++|+||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999998843
No 463
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.80 E-value=0.16 Score=56.50 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=73.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEEecccccccc--------cc------chHHHH----HHHHHHHh---c
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------FG------EGEKYV----KAVFSLAS---K 993 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~seL~s~~--------iG------~~E~~I----~~lF~~A~---k 993 (1138)
-.+++.|++|+|||+++..|...+. +..+.+-++.....+ +. +.+..+ ..+-..+. .
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4799999999999999999988773 333333332221111 00 001111 11111111 1
Q ss_pred ---cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecC
Q 001150 994 ---IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 994 ---~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~l 1070 (1138)
.++.+|+||++..- ..-...+..++. ..+ .-++.+|.++.....+++.++.-.+.++.+.
T Consensus 94 ~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~---~gR---H~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~- 156 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGDK----------KLKSKILRQFFN---NGR---HYNISIIFLSQSYFHLPPNIRSNIDYFIIFN- 156 (241)
T ss_pred cCCCCCeEEEEeCCCCc----------hhhhHHHHHHHh---ccc---ccceEEEEEeeecccCCHHHhhcceEEEEec-
Confidence 23679999997421 111223333332 111 2458888888888999999988777667665
Q ss_pred CCHHHHHHHHHHH
Q 001150 1071 PDAPNRAKILQVI 1083 (1138)
Q Consensus 1071 Pd~eeR~eIL~~l 1083 (1138)
-+..+...|++.+
T Consensus 157 ~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 NSKRDLENIYRNM 169 (241)
T ss_pred CcHHHHHHHHHhc
Confidence 4566665555544
No 464
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.07 Score=62.93 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 906 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 906 le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
.+.+...+.+.+...+.....+. ..+..-++|+||+|+|||+++..||..+ +..+..+++..
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 45566666666654443322221 2334678999999999999999998766 55555555533
No 465
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.032 Score=67.55 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
...-|+||||+|.+ +.++.+.|...|+.-++++++|.+||....
T Consensus 120 g~~KV~IIDEah~L---s~~A~NALLKtLEEPp~~viFILaTte~~k--------------------------------- 163 (484)
T PRK14956 120 GKYKVYIIDEVHML---TDQSFNALLKTLEEPPAHIVFILATTEFHK--------------------------------- 163 (484)
T ss_pred CCCEEEEEechhhc---CHHHHHHHHHHhhcCCCceEEEeecCChhh---------------------------------
Confidence 35679999999985 456777788888888999999999997542
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
+...|..|. +.|.+..+..++-.+.++..+
T Consensus 164 ----------I~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 164 ----------IPETILSRC-QDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred ----------ccHHHHhhh-heeeecCCCHHHHHHHHHHHH
Confidence 455677777 788888888776666666544
No 466
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.77 E-value=0.031 Score=69.38 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=62.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEecc-cc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~s-eL 972 (1138)
..++++++-.....+.+++++.. +..-||++||+|+|||++..++...++ .+++.+.-+ ++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 45678888888878888776642 224589999999999999888887773 334443321 11
Q ss_pred -----cccccc-chHHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 973 -----TSKWFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 973 -----~s~~iG-~~E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
....+. ........+...+-+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 111111 111235667777888899999999995
No 467
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.76 E-value=0.0096 Score=65.67 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
..|+|.||||+|||++|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998776653
No 468
>PRK13764 ATPase; Provisional
Probab=95.74 E-value=0.019 Score=71.32 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=42.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CceEEEe-cccc-----ccccccchHHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg---~~fi~Id-~seL-----~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
.++|++||||+|||+++++++..+. ..+..+. ..++ ...+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3332332 1121 11110 001112233333456789999999995
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.74 E-value=0.18 Score=58.45 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=44.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc-------cc--------c----c-chHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW--------F----G-EGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s-------~~--------i----G-~~E~~I~~lF~~A 991 (1138)
++.-++|.||+|+|||+++..||..+ +..+.-+++..+.. .| + + .+...+...+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999887 55555555432110 00 0 0 1111222333444
Q ss_pred hccCCeEEEEcCCccc
Q 001150 992 SKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L 1007 (1138)
......+|+||=..++
T Consensus 193 ~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 193 KARGIDVLIIDTAGRL 208 (318)
T ss_pred HhCCCCEEEEeCCCCC
Confidence 5566789999977654
No 470
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.13 Score=62.33 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=56.5
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
...-||+|||+|.+- .+..+.|...|+..++.+++|.+++...
T Consensus 120 ~~~kvvIIdead~lt---~~~~n~LLk~lEep~~~~~~Il~t~~~~---------------------------------- 162 (451)
T PRK06305 120 SRYKIYIIDEVHMLT---KEAFNSLLKTLEEPPQHVKFFLATTEIH---------------------------------- 162 (451)
T ss_pred CCCEEEEEecHHhhC---HHHHHHHHHHhhcCCCCceEEEEeCChH----------------------------------
Confidence 456799999999853 3456778888888888998988876432
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
++.+.|..|+ ..|++..++.++-...++..+
T Consensus 163 ---------kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 163 ---------KIPGTILSRC-QKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred ---------hcchHHHHhc-eEEeCCCCCHHHHHHHHHHHH
Confidence 1566788888 789999999988777776544
No 471
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.096 Score=64.31 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=31.7
Q ss_pred CeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccC
Q 001150 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHT 700 (1138)
Q Consensus 658 p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~ 700 (1138)
--|++|||+|.+- .+..+.|...|+..+..+++|.+||..
T Consensus 120 ~kV~iIDE~~~ls---~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 120 FKVYLIDEVHMLS---GHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred cEEEEEEChHhcC---HHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 3589999999842 356677888999989999999998744
No 472
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.69 E-value=0.24 Score=56.19 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s 970 (1138)
++.-++|+||+|+|||+++..+|..+ |..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34678899999999999999998777 5566656554
No 473
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.68 E-value=0.11 Score=55.19 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q 001150 939 ILLFGPPGTGKTMLAKAVA 957 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA 957 (1138)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 474
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.67 E-value=0.093 Score=56.29 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEECCCCCCHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVA 957 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA 957 (1138)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.67 E-value=0.028 Score=59.66 Aligned_cols=69 Identities=32% Similarity=0.503 Sum_probs=45.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEEecc-cccc---ccc----------cchHHHHHHHHHHHhccCCeEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVIF 1000 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~s-eL~s---~~i----------G~~E~~I~~lF~~A~k~~PsIIf 1000 (1138)
..++|.||+|+|||+++++++..+. ...+.+... ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998873 223332211 1100 000 11123456777778888999999
Q ss_pred EcCCc
Q 001150 1001 VDEVD 1005 (1138)
Q Consensus 1001 IDEID 1005 (1138)
+.||-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99994
No 476
>PRK14528 adenylate kinase; Provisional
Probab=95.66 E-value=0.012 Score=62.67 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..++|.||||+|||++|+.||..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3689999999999999999999999877553
No 477
>PRK04328 hypothetical protein; Provisional
Probab=95.63 E-value=0.096 Score=58.35 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=25.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
+...+||+|+||+|||.|+..++.+. |-+.+.++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34568999999999999998876552 555555543
No 478
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.63 E-value=0.12 Score=50.03 Aligned_cols=38 Identities=34% Similarity=0.559 Sum_probs=31.4
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHh---CCeEEEeecccc
Q 001150 431 VNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSL 470 (1138)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~---~a~ll~~d~~~~ 470 (1138)
..+-|++.||+| +++++|++++++++ +.+++.++.+.+
T Consensus 18 ~~~~v~i~G~~G--~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPG--TGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCC--CCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 445799999999 99999999999998 777777765443
No 479
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.61 E-value=0.094 Score=57.02 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
+..-++|.|+||+|||.++..+|... +-+++.++.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34568999999999999999888654 666666665
No 480
>PRK06547 hypothetical protein; Provisional
Probab=95.60 E-value=0.013 Score=61.82 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=28.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
+.-|+|.|++|+|||++|+.|+..++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 457889999999999999999999987776543
No 481
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.60 E-value=0.013 Score=61.18 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
.-++|.||||+|||++|+.|+..+|+.++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 368999999999999999999999866544
No 482
>PRK13946 shikimate kinase; Provisional
Probab=95.60 E-value=0.011 Score=62.59 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=30.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEec
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~ 969 (1138)
..|+|.|.+|+|||++++.||+.+|++|+..+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 469999999999999999999999999987763
No 483
>PRK02496 adk adenylate kinase; Provisional
Probab=95.59 E-value=0.012 Score=61.90 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999998876654
No 484
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.58 E-value=0.098 Score=56.14 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~ 958 (1138)
..++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4699999999999999999983
No 485
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.57 E-value=0.11 Score=54.13 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s 970 (1138)
-+++.|+||+|||+++..+|..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 37899999999999999998876 6667766654
No 486
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.57 E-value=0.048 Score=57.32 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el 960 (1138)
+...++|+||+|+||++|.+++|...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34569999999999999999999765
No 487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.56 E-value=0.069 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.8
Q ss_pred ceEEEECCCCCCHHH-HHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTM-LAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~-LArALA~el 960 (1138)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555554
No 488
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.56 E-value=0.013 Score=61.48 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEec
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~ 969 (1138)
..|+|.|++|+|||++++.||..++++++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887764
No 489
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.52 E-value=0.069 Score=64.53 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=55.1
Q ss_pred CeEEEEcchhhhhc---CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 001150 658 PFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1138)
Q Consensus 658 p~ILfiddi~~~l~---~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~ 734 (1138)
.-+|+||||+.+-+ .+.++++.|....+ .|..+||+++..+.. +
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlts~~~p~~------------------------------l- 249 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVISSTCAPQD------------------------------L- 249 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEecCCCHHH------------------------------H-
Confidence 45899999997543 24456666655553 477788888654421 1
Q ss_pred cccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhhh
Q 001150 735 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 735 r~~~~~~~~~~~d~~l~rRF~--~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
..+++.|..||. ..+.|..|+.+.|..|++.....
T Consensus 250 ---------~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 250 ---------KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ---------hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 115778888995 68888889999999999876543
No 490
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.51 E-value=0.034 Score=57.05 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=28.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL 972 (1138)
++|+|+||+|||++|+.|+..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 667777765444
No 491
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.11 Score=63.95 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=32.9
Q ss_pred CeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCC
Q 001150 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 701 (1138)
Q Consensus 658 p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d 701 (1138)
.-|++|||+|.+ +.+..|.|...|+..++.+++|.+||...
T Consensus 120 ~kVvIIDEad~l---s~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 120 FKVYIIDEVHML---SKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred ceEEEEcCcccC---CHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 459999999974 23567778888999899999999997654
No 492
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.46 E-value=0.027 Score=65.50 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=47.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEEe-cccccc-----------cc--ccchHHHHHHHHHHHhccCCeEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVIF 1000 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~Id-~seL~s-----------~~--iG~~E~~I~~lF~~A~k~~PsIIf 1000 (1138)
.++|++|++|+|||+++++++.... ..++.+. ..++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5799999999999999999998883 3333331 112210 00 111222457788899999999999
Q ss_pred EcCCc
Q 001150 1001 VDEVD 1005 (1138)
Q Consensus 1001 IDEID 1005 (1138)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99995
No 493
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.45 E-value=0.013 Score=63.25 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
|+|.||||+|||++|+.||..+|++++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998766653
No 494
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.43 E-value=0.039 Score=62.43 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=36.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc--c-cc-ccchHHHHHHH----HHHHhccCCeEEEEcCCccc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KW-FGEGEKYVKAV----FSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~--s-~~-iG~~E~~I~~l----F~~A~k~~PsIIfIDEID~L 1007 (1138)
|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .| ....|+.++.. +..+- ....||++|+.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 7899999999999999999886 6777777754442 1 11 12234444432 22222 23479999998766
No 495
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.43 E-value=0.015 Score=63.03 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999998766653
No 496
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.42 E-value=0.045 Score=48.87 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh-CCceEEEe
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA-GANFINIS 968 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el-g~~fi~Id 968 (1138)
+.+.|++|+|||+++++++..+ +..+..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999996 34444444
No 497
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.12 Score=61.51 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=39.6
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 001150 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1138)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1138)
+|+++-+. |+.+..|..+.- .. ..+..+||+||+| ++++++|+++|+.+...
T Consensus 14 ~~~eiiGq--~~~~~~L~~~~~----~~----------~~~ha~lf~Gp~G--~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 14 KFADITAQ--EHITRTIQNSLR----MG----------RVGHGYIFSGLRG--VGKTTAARVFAKAVNCQ 65 (397)
T ss_pred cHhhccCh--HHHHHHHHHHHH----hC----------CcceeEEEECCCC--CCHHHHHHHHHHHhcCC
Confidence 47776554 888888766543 11 1234799999999 99999999999999875
No 498
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.39 E-value=0.024 Score=65.13 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=31.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|...|+|+|.+|+|||++++.||..+|++|+.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 44568999999999999999999999999999554
No 499
>PLN02200 adenylate kinase family protein
Probab=95.38 E-value=0.017 Score=63.81 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
+.-|+|.|+||+|||++|+.||..+|+. .+++.+++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 3568999999999999999999999865 466666543
No 500
>PRK06696 uridine kinase; Validated
Probab=95.37 E-value=0.037 Score=60.44 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=32.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~ 973 (1138)
.-|.|.|++|+|||+||+.|+..+ |.+++.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 468899999999999999999999 6788887777664
Done!