Query 001150
Match_columns 1138
No_of_seqs 647 out of 3213
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.3E-62 8E-67 607.1 29.4 491 389-1129 199-706 (806)
2 1ypw_A Transitional endoplasmi 100.0 6.5E-43 2.2E-47 438.0 11.4 485 390-1128 200-705 (806)
3 4b4t_J 26S protease regulatory 100.0 6E-39 2.1E-43 370.4 25.8 227 895-1124 142-372 (405)
4 4b4t_I 26S protease regulatory 100.0 4.9E-38 1.7E-42 363.9 20.3 227 895-1124 176-406 (437)
5 4b4t_H 26S protease regulatory 100.0 2.4E-37 8.2E-42 361.2 24.6 227 895-1124 203-433 (467)
6 4b4t_M 26S protease regulatory 100.0 2.2E-37 7.5E-42 361.6 22.9 228 894-1124 174-405 (434)
7 4b4t_L 26S protease subunit RP 100.0 3E-37 1E-41 360.7 21.3 227 895-1124 175-405 (437)
8 4b4t_K 26S protease regulatory 100.0 8.1E-37 2.8E-41 356.5 22.9 227 895-1124 166-397 (428)
9 3cf2_A TER ATPase, transitiona 100.0 4.7E-33 1.6E-37 345.4 17.4 229 896-1128 199-429 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.3E-31 1.8E-35 297.5 25.9 229 896-1128 7-237 (322)
11 3eie_A Vacuolar protein sortin 100.0 3.5E-30 1.2E-34 290.0 21.4 230 895-1128 12-242 (322)
12 2qp9_X Vacuolar protein sortin 100.0 9.6E-30 3.3E-34 290.9 22.1 234 891-1128 41-275 (355)
13 2zan_A Vacuolar protein sortin 100.0 1.9E-29 6.5E-34 296.7 20.8 236 889-1128 122-359 (444)
14 3cf0_A Transitional endoplasmi 100.0 1.1E-29 3.8E-34 283.5 17.5 230 896-1128 10-243 (301)
15 2x8a_A Nuclear valosin-contain 100.0 3.9E-29 1.3E-33 276.4 19.8 229 896-1128 5-240 (274)
16 3pxi_A Negative regulator of g 100.0 1.6E-27 5.4E-32 297.3 26.2 406 643-1129 256-732 (758)
17 1r6b_X CLPA protein; AAA+, N-t 100.0 4.3E-27 1.5E-31 293.1 26.4 394 642-1127 266-721 (758)
18 2ce7_A Cell division protein F 99.9 4.9E-27 1.7E-31 277.9 23.2 225 895-1123 10-238 (476)
19 3h4m_A Proteasome-activating n 99.9 8.8E-27 3E-31 255.7 23.6 226 896-1124 12-241 (285)
20 3d8b_A Fidgetin-like protein 1 99.9 5.9E-27 2E-31 267.8 22.0 227 896-1125 79-306 (357)
21 1lv7_A FTSH; alpha/beta domain 99.9 1.1E-26 3.6E-31 252.2 22.0 226 895-1124 6-235 (257)
22 3b9p_A CG5977-PA, isoform A; A 99.9 1.3E-26 4.5E-31 256.1 21.2 236 886-1125 7-244 (297)
23 4b4t_J 26S protease regulatory 99.9 3.1E-27 1E-31 273.0 16.3 233 389-859 143-389 (405)
24 1qvr_A CLPB protein; coiled co 99.9 6.8E-26 2.3E-30 286.1 30.2 419 642-1130 250-828 (854)
25 3vfd_A Spastin; ATPase, microt 99.9 1E-26 3.5E-31 268.3 20.5 228 895-1125 109-337 (389)
26 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2E-26 6.9E-31 248.8 19.0 224 897-1124 2-232 (262)
27 3hu3_A Transitional endoplasmi 99.9 1.7E-26 5.9E-31 274.6 19.6 227 897-1127 200-428 (489)
28 4b4t_I 26S protease regulatory 99.9 8.6E-27 2.9E-31 270.2 15.8 235 387-858 175-422 (437)
29 4b4t_M 26S protease regulatory 99.9 3.8E-26 1.3E-30 266.9 14.4 215 386-815 173-400 (434)
30 1ixz_A ATP-dependent metallopr 99.9 8E-25 2.7E-29 237.0 21.8 227 894-1124 9-239 (254)
31 4b4t_L 26S protease subunit RP 99.9 1.2E-25 4E-30 263.0 15.9 234 388-859 175-422 (437)
32 4b4t_H 26S protease regulatory 99.9 1.6E-25 5.4E-30 261.8 15.1 234 388-859 203-450 (467)
33 2dhr_A FTSH; AAA+ protein, hex 99.9 3.8E-25 1.3E-29 263.2 18.0 224 896-1123 26-253 (499)
34 2r62_A Cell division protease 99.9 1.5E-26 5.3E-31 251.9 0.3 227 893-1122 3-234 (268)
35 1iy2_A ATP-dependent metallopr 99.9 1.7E-23 5.9E-28 230.2 24.1 225 896-1124 35-263 (278)
36 4b4t_K 26S protease regulatory 99.9 1.4E-24 4.6E-29 253.6 15.3 213 387-815 165-392 (428)
37 1ypw_A Transitional endoplasmi 99.9 2.7E-22 9.4E-27 251.6 18.0 227 896-1126 199-427 (806)
38 3t15_A Ribulose bisphosphate c 99.9 9.4E-22 3.2E-26 219.1 16.9 175 933-1113 33-223 (293)
39 1gxc_A CHK2, CDS1, serine/thre 99.8 5.5E-20 1.9E-24 186.1 12.3 112 121-232 24-145 (149)
40 3syl_A Protein CBBX; photosynt 99.8 1E-18 3.4E-23 193.6 16.2 216 902-1128 32-269 (309)
41 2c9o_A RUVB-like 1; hexameric 99.8 2E-20 6.9E-25 220.5 -1.9 202 896-1116 32-262 (456)
42 1lgp_A Cell cycle checkpoint p 99.8 1.2E-18 4E-23 168.9 9.3 105 125-231 2-114 (116)
43 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.3E-17 4.4E-22 188.2 17.7 213 387-816 5-229 (322)
44 2x8a_A Nuclear valosin-contain 99.7 9.2E-18 3.2E-22 185.4 13.6 215 389-815 5-231 (274)
45 1ofh_A ATP-dependent HSL prote 99.7 4.2E-17 1.4E-21 179.7 17.2 221 902-1122 16-274 (310)
46 3eie_A Vacuolar protein sortin 99.7 1.3E-16 4.4E-21 179.5 18.1 214 387-817 11-235 (322)
47 3uk6_A RUVB-like 2; hexameric 99.7 3.9E-16 1.3E-20 177.0 19.3 200 897-1122 40-311 (368)
48 1d2n_A N-ethylmaleimide-sensit 99.7 3.3E-17 1.1E-21 179.2 10.0 178 934-1120 62-248 (272)
49 3pfi_A Holliday junction ATP-d 99.7 8.4E-16 2.9E-20 172.7 21.7 194 898-1121 26-234 (338)
50 3hws_A ATP-dependent CLP prote 99.7 7E-17 2.4E-21 184.3 12.8 226 903-1128 17-329 (363)
51 2qp9_X Vacuolar protein sortin 99.7 1.4E-16 4.7E-21 182.1 14.9 222 377-816 35-267 (355)
52 3cf0_A Transitional endoplasmi 99.7 8.3E-17 2.8E-21 179.5 10.7 214 388-817 9-236 (301)
53 2zan_A Vacuolar protein sortin 99.7 1.9E-16 6.6E-21 186.2 13.5 224 375-816 116-351 (444)
54 3m6a_A ATP-dependent protease 99.7 1.7E-16 6E-21 191.1 13.1 210 900-1127 80-321 (543)
55 3hu3_A Transitional endoplasmi 99.6 1.3E-15 4.6E-20 181.1 18.1 211 390-815 200-420 (489)
56 4fcw_A Chaperone protein CLPB; 99.6 1.6E-15 5.3E-20 167.9 17.0 212 902-1130 18-287 (311)
57 1g41_A Heat shock protein HSLU 99.6 4.9E-15 1.7E-19 173.7 20.9 225 902-1126 16-412 (444)
58 1hqc_A RUVB; extended AAA-ATPa 99.6 3.1E-15 1.1E-19 166.5 15.2 194 898-1120 9-217 (324)
59 2jqj_A DNA damage response pro 99.6 1.1E-15 3.7E-20 154.9 10.3 108 121-231 12-125 (151)
60 2c9o_A RUVB-like 1; hexameric 99.6 2.8E-15 9.6E-20 176.7 15.1 109 996-1122 296-418 (456)
61 1g6g_A Protein kinase RAD53; b 99.6 1.8E-15 6E-20 149.1 11.1 103 125-230 3-122 (127)
62 3i6u_A CDS1, serine/threonine- 99.6 1.6E-15 5.5E-20 176.2 11.1 109 123-231 6-124 (419)
63 2ce7_A Cell division protein F 99.6 1.8E-14 6E-19 170.8 19.4 215 382-813 3-232 (476)
64 2chg_A Replication factor C sm 99.6 7E-14 2.4E-18 144.5 21.2 186 898-1121 14-211 (226)
65 2qz4_A Paraplegin; AAA+, SPG7, 99.6 1.7E-14 5.7E-19 155.5 17.1 73 390-470 2-75 (262)
66 1lv7_A FTSH; alpha/beta domain 99.6 4.1E-14 1.4E-18 153.2 19.7 124 642-813 92-228 (257)
67 3h4m_A Proteasome-activating n 99.6 1.9E-14 6.5E-19 157.6 17.0 210 389-813 12-234 (285)
68 3d8b_A Fidgetin-like protein 1 99.6 2.4E-14 8.1E-19 163.6 18.1 221 377-815 68-300 (357)
69 1jbk_A CLPB protein; beta barr 99.6 3.9E-15 1.3E-19 150.4 9.8 158 898-1080 19-194 (195)
70 1um8_A ATP-dependent CLP prote 99.6 1.1E-14 3.8E-19 166.7 14.7 226 902-1127 22-345 (376)
71 1l8q_A Chromosomal replication 99.6 4.4E-14 1.5E-18 158.3 18.5 196 897-1120 7-214 (324)
72 1njg_A DNA polymerase III subu 99.6 1.6E-13 5.6E-18 143.1 21.5 186 898-1120 20-234 (250)
73 3u61_B DNA polymerase accessor 99.6 3.6E-14 1.2E-18 158.7 17.2 184 898-1118 23-220 (324)
74 2z4s_A Chromosomal replication 99.6 4.2E-14 1.4E-18 166.2 18.1 200 897-1122 101-314 (440)
75 3pvs_A Replication-associated 99.6 3.4E-14 1.2E-18 167.3 17.1 183 898-1121 23-222 (447)
76 3pxg_A Negative regulator of g 99.5 1.8E-14 6E-19 170.6 13.4 182 898-1119 177-383 (468)
77 3b9p_A CG5977-PA, isoform A; A 99.5 1E-13 3.5E-18 152.9 18.2 222 376-815 4-238 (297)
78 2v1u_A Cell division control p 99.5 2.1E-13 7.2E-18 154.1 20.9 203 900-1122 18-257 (387)
79 4h87_A Kanadaptin; FHA domain 99.5 1.6E-14 5.5E-19 143.0 10.0 88 138-226 33-129 (130)
80 3bos_A Putative DNA replicatio 99.5 5.8E-13 2E-17 140.4 22.1 188 898-1122 25-225 (242)
81 3vfd_A Spastin; ATPase, microt 99.5 1.6E-13 5.5E-18 158.2 17.5 221 377-815 99-331 (389)
82 1r6b_X CLPA protein; AAA+, N-t 99.5 6.6E-14 2.3E-18 174.6 15.2 198 899-1120 184-408 (758)
83 2qby_B CDC6 homolog 3, cell di 99.5 3.7E-13 1.3E-17 152.9 19.7 193 901-1121 20-252 (384)
84 1sxj_A Activator 1 95 kDa subu 99.5 1E-13 3.5E-18 165.9 15.8 205 898-1118 36-256 (516)
85 1qvr_A CLPB protein; coiled co 99.5 8.1E-14 2.8E-18 176.2 15.4 199 898-1121 167-392 (854)
86 2pie_A E3 ubiquitin-protein li 99.5 6.6E-14 2.3E-18 139.8 11.5 105 121-229 4-118 (138)
87 3te6_A Regulatory protein SIR3 99.5 5.5E-13 1.9E-17 150.5 19.8 180 935-1130 44-295 (318)
88 1g3g_A Protien kinase SPK1; FH 99.5 1.1E-13 3.8E-18 142.1 11.9 105 124-231 30-151 (164)
89 2chq_A Replication factor C sm 99.5 4.5E-13 1.5E-17 147.8 17.6 189 897-1119 13-209 (319)
90 2r44_A Uncharacterized protein 99.5 1.3E-13 4.5E-18 154.7 13.5 161 900-1086 26-200 (331)
91 2p65_A Hypothetical protein PF 99.5 8.6E-14 2.9E-18 140.7 10.6 149 899-1072 20-187 (187)
92 3pxi_A Negative regulator of g 99.5 1.6E-13 5.4E-18 171.3 15.1 184 898-1121 177-385 (758)
93 2dhr_A FTSH; AAA+ protein, hex 99.5 2.6E-13 8.8E-18 161.7 15.9 123 643-813 112-247 (499)
94 1sxj_D Activator 1 41 kDa subu 99.5 7.7E-13 2.6E-17 148.5 18.5 186 898-1121 34-242 (353)
95 3va4_A Mediator of DNA damage 99.5 1.3E-13 4.4E-18 136.8 10.5 105 119-228 16-126 (132)
96 1g8p_A Magnesium-chelatase 38 99.5 3.5E-13 1.2E-17 151.3 15.1 197 897-1121 20-302 (350)
97 1qu5_A Protein kinase SPK1; FH 99.4 1.3E-13 4.4E-18 143.8 9.8 102 126-227 28-146 (182)
98 1jr3_A DNA polymerase III subu 99.4 1.9E-12 6.5E-17 146.4 20.0 185 898-1119 13-226 (373)
99 1iqp_A RFCS; clamp loader, ext 99.4 2.2E-12 7.5E-17 142.8 19.3 188 898-1119 22-217 (327)
100 1sxj_B Activator 1 37 kDa subu 99.4 2.2E-12 7.5E-17 142.6 18.9 183 898-1118 18-213 (323)
101 2r62_A Cell division protease 99.4 4.4E-14 1.5E-18 153.5 5.1 76 384-467 1-77 (268)
102 2qby_A CDC6 homolog 1, cell di 99.4 3.5E-12 1.2E-16 143.8 19.4 202 899-1122 18-253 (386)
103 1in4_A RUVB, holliday junction 99.4 8.8E-12 3E-16 141.0 22.5 194 898-1121 22-230 (334)
104 1fnn_A CDC6P, cell division co 99.4 8.2E-12 2.8E-16 141.6 21.8 200 900-1122 16-255 (389)
105 1uht_A Expressed protein; FHA 99.4 4.6E-13 1.6E-17 130.0 9.3 91 125-219 10-105 (118)
106 1dmz_A Protein (protein kinase 99.4 4.9E-13 1.7E-17 136.5 9.7 89 138-226 18-121 (158)
107 1sxj_E Activator 1 40 kDa subu 99.4 4.5E-12 1.5E-16 142.9 17.5 188 897-1119 10-242 (354)
108 3els_A PRE-mRNA leakage protei 99.4 1.2E-12 4E-17 133.8 10.8 92 136-227 46-157 (158)
109 2bjv_A PSP operon transcriptio 99.4 1.7E-12 5.8E-17 141.1 12.8 196 898-1121 3-240 (265)
110 2csw_A Ubiquitin ligase protei 99.4 6.6E-13 2.2E-17 133.7 8.7 101 124-228 15-125 (145)
111 3hx1_A SLR1951 protein; P74513 99.4 7.6E-13 2.6E-17 131.1 8.3 88 137-230 22-116 (131)
112 3t15_A Ribulose bisphosphate c 99.4 1.5E-12 5.1E-17 144.9 11.6 117 642-809 83-223 (293)
113 3po8_A RV0020C protein, putati 99.3 2.2E-12 7.4E-17 121.7 9.6 81 136-226 14-95 (100)
114 1ixz_A ATP-dependent metallopr 99.3 4.1E-12 1.4E-16 137.3 13.1 124 642-813 96-232 (254)
115 1r21_A Antigen KI-67; beta san 99.3 1.3E-12 4.5E-17 128.6 6.8 95 125-228 10-108 (128)
116 1ojl_A Transcriptional regulat 99.3 3E-12 1E-16 143.4 10.1 192 902-1121 3-235 (304)
117 2xt9_B Putative signal transdu 99.3 6.7E-12 2.3E-16 121.4 10.9 85 136-230 22-107 (115)
118 2kb3_A Oxoglutarate dehydrogen 99.3 7.8E-12 2.7E-16 125.7 11.2 83 137-229 58-141 (143)
119 2jpe_A Nuclear inhibitor of pr 99.3 1.4E-12 4.6E-17 130.6 4.8 86 138-226 47-135 (140)
120 3elv_A PRE-mRNA leakage protei 99.3 7.8E-12 2.7E-16 131.9 10.8 83 137-219 94-193 (205)
121 1a5t_A Delta prime, HOLB; zinc 99.3 1.5E-10 5.2E-15 130.9 22.1 174 905-1116 6-207 (334)
122 1sxj_C Activator 1 40 kDa subu 99.3 4.5E-11 1.5E-15 135.0 17.7 180 898-1115 22-213 (340)
123 2kfu_A RV1827 PThr 22; FHA dom 99.3 2.2E-11 7.4E-16 124.8 13.3 82 137-228 67-149 (162)
124 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 6.1E-12 2.1E-16 150.0 10.0 191 902-1122 23-267 (500)
125 1iy2_A ATP-dependent metallopr 99.3 3.5E-11 1.2E-15 132.1 14.4 124 642-813 120-256 (278)
126 1mzk_A Kinase associated prote 99.2 1.2E-11 4.3E-16 123.5 9.6 86 139-229 21-120 (139)
127 3oun_A Putative uncharacterize 99.2 2.5E-11 8.4E-16 123.6 10.4 80 136-225 76-156 (157)
128 4ejq_A Kinesin-like protein KI 99.2 4.3E-11 1.5E-15 121.7 12.1 82 142-227 58-143 (154)
129 3gqs_A Adenylate cyclase-like 99.2 3.2E-11 1.1E-15 115.0 10.4 81 138-226 17-100 (106)
130 1wln_A Afadin; beta sandwich, 99.2 4.5E-11 1.6E-15 116.5 9.6 82 138-227 29-113 (120)
131 3n70_A Transport activator; si 99.2 3.8E-11 1.3E-15 119.6 8.6 131 902-1071 2-142 (145)
132 3f9v_A Minichromosome maintena 99.2 8.4E-12 2.9E-16 152.0 4.5 166 902-1086 296-492 (595)
133 2ff4_A Probable regulatory pro 99.2 5.9E-11 2E-15 137.3 10.7 95 124-228 286-381 (388)
134 3fm8_A Kinesin-like protein KI 99.2 1.3E-10 4.6E-15 113.9 11.2 75 145-226 48-122 (124)
135 3co5_A Putative two-component 99.1 1.5E-11 5.2E-16 122.3 4.1 131 902-1071 5-140 (143)
136 2gno_A DNA polymerase III, gam 99.1 1.7E-09 5.9E-14 121.3 19.4 142 905-1084 1-152 (305)
137 1w5s_A Origin recognition comp 99.0 3.7E-09 1.3E-13 120.9 16.7 205 901-1121 22-273 (412)
138 3cmw_A Protein RECA, recombina 99.0 7.5E-10 2.6E-14 146.7 9.9 153 895-1050 1014-1217(1706)
139 2brf_A Bifunctional polynucleo 98.9 2.5E-09 8.7E-14 102.3 10.1 95 127-226 9-105 (110)
140 3k1j_A LON protease, ATP-depen 98.9 2.1E-09 7.2E-14 131.1 10.5 49 897-961 37-85 (604)
141 3kt9_A Aprataxin; FHA domain, 98.9 5.8E-09 2E-13 98.8 10.9 94 127-225 4-98 (102)
142 1yj5_C 5' polynucleotide kinas 98.9 7.7E-09 2.6E-13 102.4 10.2 98 125-227 7-106 (143)
143 3pxg_A Negative regulator of g 98.8 1.1E-08 3.7E-13 121.1 11.6 132 643-833 256-387 (468)
144 1ny5_A Transcriptional regulat 98.8 2.3E-08 7.9E-13 115.5 12.1 169 937-1121 161-370 (387)
145 1ujx_A Polynucleotide kinase 3 98.8 5.3E-09 1.8E-13 101.3 5.5 97 125-226 14-112 (119)
146 1g41_A Heat shock protein HSLU 98.8 2.1E-09 7.3E-14 126.2 3.1 82 385-471 5-87 (444)
147 4akg_A Glutathione S-transfera 98.7 3.2E-08 1.1E-12 136.5 14.2 139 937-1086 1268-1433(2695)
148 4egx_A Kinesin-like protein KI 98.7 9.2E-08 3.1E-12 99.9 12.1 81 143-227 89-173 (184)
149 3syl_A Protein CBBX; photosynt 98.7 5.8E-08 2E-12 107.2 10.7 84 657-778 130-219 (309)
150 3ec2_A DNA replication protein 98.6 7E-08 2.4E-12 98.6 10.0 98 897-1007 6-112 (180)
151 3uv0_A Mutator 2, isoform B; F 98.6 4.1E-08 1.4E-12 91.7 7.3 68 138-213 13-82 (102)
152 2fna_A Conserved hypothetical 98.6 6.5E-07 2.2E-11 99.6 18.5 186 898-1116 10-252 (357)
153 2kjq_A DNAA-related protein; s 98.6 2.4E-07 8.3E-12 93.1 11.9 105 937-1070 37-147 (149)
154 3dzd_A Transcriptional regulat 98.5 1.8E-07 6.3E-12 107.4 10.2 168 937-1120 153-360 (368)
155 2qen_A Walker-type ATPase; unk 98.5 3.8E-06 1.3E-10 93.3 20.1 189 898-1115 9-247 (350)
156 2w58_A DNAI, primosome compone 98.5 2.1E-07 7.1E-12 96.6 9.0 69 937-1007 55-127 (202)
157 1ofh_A ATP-dependent HSL prote 98.5 3E-07 1E-11 100.9 10.7 82 386-471 6-87 (310)
158 3huf_A DNA repair and telomere 98.5 3.2E-07 1.1E-11 102.0 10.0 87 138-226 14-112 (325)
159 3cmw_A Protein RECA, recombina 98.5 4.1E-07 1.4E-11 120.9 12.4 76 937-1012 1432-1526(1706)
160 3kw6_A 26S protease regulatory 98.4 2.2E-07 7.5E-12 83.4 6.4 56 1069-1124 1-56 (78)
161 1jbk_A CLPB protein; beta barr 98.4 8.3E-07 2.9E-11 89.1 10.7 88 642-772 102-194 (195)
162 1um8_A ATP-dependent CLP prote 98.4 4.7E-07 1.6E-11 103.5 9.1 67 402-470 27-108 (376)
163 2krk_A 26S protease regulatory 98.4 2.3E-07 7.9E-12 85.3 5.3 58 1068-1125 8-65 (86)
164 2vhj_A Ntpase P4, P4; non- hyd 98.3 2.7E-07 9.3E-12 104.1 5.7 111 937-1056 124-240 (331)
165 3hws_A ATP-dependent CLP prote 98.3 1E-06 3.4E-11 100.4 9.6 68 402-471 21-88 (363)
166 4akg_A Glutathione S-transfera 98.3 2.8E-06 9.5E-11 117.6 15.4 132 937-1081 646-790 (2695)
167 3m6a_A ATP-dependent protease 98.3 1.7E-06 5.9E-11 104.3 11.9 35 431-467 107-141 (543)
168 3f8t_A Predicted ATPase involv 98.3 1.3E-06 4.3E-11 102.9 10.3 152 903-1074 215-384 (506)
169 1d2n_A N-ethylmaleimide-sensit 98.3 1.7E-06 5.9E-11 94.2 10.5 36 430-467 62-97 (272)
170 2r2a_A Uncharacterized protein 98.2 1.5E-06 5.3E-11 91.7 7.5 127 937-1073 6-155 (199)
171 3pfi_A Holliday junction ATP-d 98.2 1.3E-05 4.4E-10 89.7 15.3 62 392-467 27-88 (338)
172 3vlf_B 26S protease regulatory 98.2 1.6E-06 5.6E-11 79.8 6.2 54 1072-1125 2-55 (88)
173 2qgz_A Helicase loader, putati 98.1 1.5E-06 5E-11 97.5 6.0 70 936-1007 152-226 (308)
174 1sxj_A Activator 1 95 kDa subu 98.1 1.9E-05 6.5E-10 94.5 15.4 77 392-472 37-115 (516)
175 3u61_B DNA polymerase accessor 98.1 1.5E-05 5.1E-10 88.8 13.5 76 657-778 105-180 (324)
176 2p65_A Hypothetical protein PF 98.1 1E-05 3.5E-10 81.2 10.2 80 642-764 102-187 (187)
177 4a0e_A YSCD, type III secretio 98.1 6.3E-06 2.2E-10 80.3 8.1 76 136-218 15-91 (123)
178 1tue_A Replication protein E1; 98.1 5.5E-06 1.9E-10 88.0 8.1 127 937-1089 59-210 (212)
179 3aji_B S6C, proteasome (prosom 98.0 3.6E-06 1.2E-10 76.2 4.1 54 1072-1125 2-55 (83)
180 2chg_A Replication factor C sm 98.0 0.00013 4.4E-09 74.8 16.0 75 656-777 101-175 (226)
181 1u0j_A DNA replication protein 97.9 1.8E-05 6.3E-10 87.1 9.2 126 936-1083 104-250 (267)
182 1hqc_A RUVB; extended AAA-ATPa 97.9 8E-05 2.7E-09 82.4 13.5 35 431-467 37-71 (324)
183 3vkg_A Dynein heavy chain, cyt 97.9 3E-05 1E-09 108.3 11.8 139 937-1086 1305-1471(3245)
184 2v1u_A Cell division control p 97.8 0.0002 6.9E-09 80.5 15.9 95 642-778 117-216 (387)
185 2r44_A Uncharacterized protein 97.8 0.00011 3.9E-09 82.0 13.6 33 433-467 47-79 (331)
186 4fcw_A Chaperone protein CLPB; 97.8 0.00014 4.9E-09 79.9 13.9 107 656-783 118-236 (311)
187 3vkg_A Dynein heavy chain, cyt 97.8 0.00012 4.2E-09 102.3 15.5 131 937-1080 605-749 (3245)
188 3pvs_A Replication-associated 97.8 7.4E-05 2.5E-09 88.0 11.5 76 656-778 105-180 (447)
189 3te6_A Regulatory protein SIR3 97.7 0.0002 6.9E-09 80.8 13.8 95 642-778 118-213 (318)
190 3cmu_A Protein RECA, recombina 97.7 4.6E-05 1.6E-09 102.8 9.9 77 933-1009 1424-1519(2050)
191 2qby_B CDC6 homolog 3, cell di 97.7 0.00046 1.6E-08 77.9 16.0 89 642-777 122-211 (384)
192 2dzn_B 26S protease regulatory 97.7 6.2E-06 2.1E-10 74.7 0.3 52 1074-1125 1-52 (82)
193 3uk6_A RUVB-like 2; hexameric 97.7 0.00012 4.2E-09 82.6 10.5 85 658-778 190-274 (368)
194 1jr3_D DNA polymerase III, del 97.7 0.00046 1.6E-08 77.6 15.1 157 937-1119 19-190 (343)
195 1ye8_A Protein THEP1, hypothet 97.6 0.00036 1.2E-08 72.0 12.2 27 938-964 2-28 (178)
196 1njg_A DNA polymerase III subu 97.5 0.0015 5.3E-08 67.3 15.6 75 656-777 125-199 (250)
197 1wv3_A Similar to DNA segregat 97.5 0.00013 4.5E-09 79.0 7.6 69 139-215 86-159 (238)
198 1l8q_A Chromosomal replication 97.5 0.0002 7E-09 79.8 8.6 38 431-470 36-76 (324)
199 3bos_A Putative DNA replicatio 97.4 0.00089 3E-08 69.9 12.2 26 432-459 52-77 (242)
200 1sxj_B Activator 1 37 kDa subu 97.4 0.001 3.5E-08 73.0 13.1 75 656-777 106-180 (323)
201 1g8p_A Magnesium-chelatase 38 97.4 0.00055 1.9E-08 76.4 10.9 52 390-460 20-71 (350)
202 2qby_A CDC6 homolog 1, cell di 97.4 0.0029 1E-07 70.8 16.8 94 642-777 115-211 (386)
203 2z4s_A Chromosomal replication 97.4 0.00018 6.3E-09 84.4 7.2 79 657-777 194-277 (440)
204 2chq_A Replication factor C sm 97.3 0.0003 1E-08 77.1 7.8 75 656-777 101-175 (319)
205 2r8r_A Sensor protein; KDPD, P 97.3 0.0024 8.2E-08 68.7 14.2 162 937-1123 7-210 (228)
206 2krk_A 26S protease regulatory 97.2 0.00015 5.2E-09 66.4 3.1 74 760-859 8-81 (86)
207 2cvh_A DNA repair and recombin 97.2 0.0021 7.1E-08 66.7 12.1 37 935-971 19-55 (220)
208 3kw6_A 26S protease regulatory 97.2 0.0001 3.5E-09 65.9 1.8 73 761-859 1-73 (78)
209 1iqp_A RFCS; clamp loader, ext 97.2 0.0015 5.1E-08 71.8 11.3 74 656-776 109-182 (327)
210 1jr3_A DNA polymerase III subu 97.1 0.0034 1.1E-07 70.5 13.9 89 643-778 104-193 (373)
211 2bjv_A PSP operon transcriptio 97.1 0.0048 1.6E-07 66.5 14.3 37 432-470 29-68 (265)
212 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0017 5.6E-08 67.7 10.3 33 937-969 24-59 (235)
213 1z6t_A APAF-1, apoptotic prote 97.1 0.0082 2.8E-07 72.1 17.2 174 900-1115 123-329 (591)
214 1sxj_D Activator 1 41 kDa subu 97.1 0.0041 1.4E-07 69.3 13.6 73 657-776 133-205 (353)
215 1xp8_A RECA protein, recombina 97.0 0.002 6.7E-08 74.1 11.0 75 935-1009 73-166 (366)
216 3hr8_A Protein RECA; alpha and 97.0 0.0022 7.5E-08 73.4 10.6 75 935-1009 60-153 (356)
217 1n0w_A DNA repair protein RAD5 96.9 0.0026 8.7E-08 67.1 10.0 74 937-1010 25-134 (243)
218 1fnn_A CDC6P, cell division co 96.9 0.0048 1.6E-07 69.5 12.6 91 642-777 112-207 (389)
219 2zr9_A Protein RECA, recombina 96.9 0.0034 1.2E-07 71.6 11.4 75 935-1009 60-153 (349)
220 1svm_A Large T antigen; AAA+ f 96.9 0.00029 9.9E-09 81.3 2.3 63 935-1009 168-230 (377)
221 1qhx_A CPT, protein (chloramph 96.8 0.0018 6.1E-08 65.2 7.4 34 937-970 4-37 (178)
222 2orw_A Thymidine kinase; TMTK, 96.7 0.0015 5.2E-08 67.6 6.2 113 938-1069 5-137 (184)
223 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 67.6 4.2 32 937-968 6-37 (185)
224 3sfz_A APAF-1, apoptotic pepti 96.7 0.016 5.4E-07 75.0 16.2 175 900-1114 123-328 (1249)
225 1u94_A RECA protein, recombina 96.6 0.0069 2.4E-07 69.3 11.3 75 935-1009 62-155 (356)
226 2iut_A DNA translocase FTSK; n 96.6 0.018 6E-07 69.7 14.9 75 996-1081 344-420 (574)
227 1a5t_A Delta prime, HOLB; zinc 96.6 0.015 5.1E-07 65.4 13.4 87 643-776 93-180 (334)
228 2b8t_A Thymidine kinase; deoxy 96.5 0.0093 3.2E-07 63.9 10.8 70 937-1007 13-101 (223)
229 3upu_A ATP-dependent DNA helic 96.5 0.0061 2.1E-07 71.6 10.2 23 938-960 47-69 (459)
230 3cmu_A Protein RECA, recombina 96.5 0.0041 1.4E-07 84.4 9.3 77 933-1009 729-824 (2050)
231 1v5w_A DMC1, meiotic recombina 96.5 0.0077 2.6E-07 68.3 10.2 75 935-1009 121-233 (343)
232 2z43_A DNA repair and recombin 96.5 0.0044 1.5E-07 69.5 8.2 75 935-1009 106-217 (324)
233 3vaa_A Shikimate kinase, SK; s 96.4 0.0017 5.9E-08 67.2 4.3 33 936-968 25-57 (199)
234 1ojl_A Transcriptional regulat 96.4 0.0025 8.6E-08 71.0 5.7 39 430-470 23-64 (304)
235 3io5_A Recombination and repai 96.4 0.0085 2.9E-07 67.6 9.7 73 938-1010 30-126 (333)
236 2dr3_A UPF0273 protein PH0284; 96.4 0.012 3.9E-07 62.0 10.2 35 935-969 22-59 (247)
237 1sxj_E Activator 1 40 kDa subu 96.4 0.037 1.3E-06 61.8 14.8 76 656-778 133-208 (354)
238 3kb2_A SPBC2 prophage-derived 96.3 0.0023 8E-08 63.6 4.4 31 938-968 3-33 (173)
239 2ehv_A Hypothetical protein PH 96.3 0.0082 2.8E-07 63.4 8.7 34 935-968 29-66 (251)
240 1via_A Shikimate kinase; struc 96.2 0.0024 8.2E-08 64.5 3.6 30 938-967 6-35 (175)
241 2iyv_A Shikimate kinase, SK; t 96.2 0.0026 8.7E-08 64.6 3.8 31 938-968 4-34 (184)
242 2p5t_B PEZT; postsegregational 96.2 0.014 4.7E-07 63.0 9.7 37 936-972 32-68 (253)
243 3iij_A Coilin-interacting nucl 96.2 0.003 1E-07 64.0 4.1 31 937-967 12-42 (180)
244 3aji_B S6C, proteasome (prosom 96.1 0.0027 9.2E-08 57.2 3.2 69 764-858 2-70 (83)
245 1zuh_A Shikimate kinase; alpha 96.1 0.0031 1.1E-07 63.1 4.0 32 937-968 8-39 (168)
246 2ius_A DNA translocase FTSK; n 96.1 0.05 1.7E-06 65.1 14.9 75 997-1082 299-375 (512)
247 2rhm_A Putative kinase; P-loop 96.1 0.0033 1.1E-07 63.9 4.1 31 937-967 6-36 (193)
248 2i3b_A HCR-ntpase, human cance 96.1 0.021 7.3E-07 59.4 10.1 23 938-960 3-25 (189)
249 2a5y_B CED-4; apoptosis; HET: 96.0 0.048 1.6E-06 65.4 14.4 171 905-1113 132-336 (549)
250 4a74_A DNA repair and recombin 96.0 0.011 3.6E-07 61.7 7.6 26 935-960 24-49 (231)
251 3lda_A DNA repair protein RAD5 96.0 0.012 4.3E-07 68.2 8.7 76 935-1010 177-288 (400)
252 1y63_A LMAJ004144AAA protein; 96.0 0.0036 1.2E-07 64.1 3.7 32 937-968 11-43 (184)
253 3lw7_A Adenylate kinase relate 96.0 0.0034 1.2E-07 62.0 3.5 29 938-967 3-31 (179)
254 1aky_A Adenylate kinase; ATP:A 96.0 0.004 1.4E-07 65.4 4.1 32 936-967 4-35 (220)
255 2ze6_A Isopentenyl transferase 96.0 0.0043 1.5E-07 67.3 4.5 33 938-970 3-35 (253)
256 3vlf_B 26S protease regulatory 96.0 0.003 1E-07 57.9 2.7 70 764-859 2-71 (88)
257 2cdn_A Adenylate kinase; phosp 96.0 0.0046 1.6E-07 63.9 4.5 31 937-967 21-51 (201)
258 3f9v_A Minichromosome maintena 96.0 0.019 6.6E-07 69.9 10.7 27 433-461 328-354 (595)
259 1e6c_A Shikimate kinase; phosp 96.0 0.0037 1.3E-07 62.5 3.7 30 938-967 4-33 (173)
260 1vma_A Cell division protein F 96.0 0.058 2E-06 60.4 13.7 72 935-1006 103-197 (306)
261 1tev_A UMP-CMP kinase; ploop, 95.9 0.0042 1.5E-07 62.9 4.0 31 937-967 4-34 (196)
262 3dm5_A SRP54, signal recogniti 95.9 0.042 1.4E-06 64.6 12.8 73 935-1007 99-194 (443)
263 2c95_A Adenylate kinase 1; tra 95.9 0.0043 1.5E-07 63.2 3.9 32 937-968 10-41 (196)
264 3jvv_A Twitching mobility prot 95.9 0.012 4.2E-07 67.2 7.9 69 937-1005 124-206 (356)
265 1in4_A RUVB, holliday junction 95.9 0.056 1.9E-06 60.7 13.2 29 433-463 52-80 (334)
266 1kag_A SKI, shikimate kinase I 95.9 0.0055 1.9E-07 61.3 4.4 30 937-966 5-34 (173)
267 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.014 4.7E-07 63.3 7.9 36 937-972 5-43 (260)
268 3bh0_A DNAB-like replicative h 95.8 0.064 2.2E-06 59.9 13.2 36 934-969 66-104 (315)
269 1gvn_B Zeta; postsegregational 95.8 0.012 4.1E-07 65.1 7.2 37 936-972 33-69 (287)
270 2pt5_A Shikimate kinase, SK; a 95.8 0.0053 1.8E-07 61.1 3.8 31 938-968 2-32 (168)
271 1sxj_C Activator 1 40 kDa subu 95.7 0.033 1.1E-06 62.4 10.5 73 657-776 110-182 (340)
272 3t61_A Gluconokinase; PSI-biol 95.7 0.007 2.4E-07 62.5 4.6 31 937-967 19-49 (202)
273 1pzn_A RAD51, DNA repair and r 95.7 0.023 7.7E-07 64.7 9.2 37 935-971 130-175 (349)
274 3dl0_A Adenylate kinase; phosp 95.7 0.0054 1.8E-07 64.0 3.8 30 938-967 2-31 (216)
275 3fb4_A Adenylate kinase; psych 95.7 0.0057 2E-07 63.7 3.9 30 938-967 2-31 (216)
276 1w5s_A Origin recognition comp 95.7 0.07 2.4E-06 60.5 13.2 94 642-777 125-229 (412)
277 3cm0_A Adenylate kinase; ATP-b 95.7 0.0069 2.3E-07 61.3 4.4 31 937-967 5-35 (186)
278 2bwj_A Adenylate kinase 5; pho 95.6 0.0059 2E-07 62.3 3.6 31 937-967 13-43 (199)
279 1kht_A Adenylate kinase; phosp 95.6 0.0048 1.6E-07 62.4 2.9 25 937-961 4-28 (192)
280 2i1q_A DNA repair and recombin 95.6 0.015 5.1E-07 64.9 7.1 75 935-1009 97-218 (322)
281 3e1s_A Exodeoxyribonuclease V, 95.6 0.0076 2.6E-07 73.1 5.1 98 937-1051 205-318 (574)
282 1nlf_A Regulatory protein REPA 95.6 0.036 1.2E-06 60.4 9.9 24 937-960 31-54 (279)
283 3tlx_A Adenylate kinase 2; str 95.6 0.0073 2.5E-07 64.9 4.3 33 935-967 28-60 (243)
284 1qf9_A UMP/CMP kinase, protein 95.6 0.0064 2.2E-07 61.5 3.6 31 937-967 7-37 (194)
285 1ak2_A Adenylate kinase isoenz 95.6 0.0073 2.5E-07 64.1 4.2 31 937-967 17-47 (233)
286 1zd8_A GTP:AMP phosphotransfer 95.6 0.0059 2E-07 64.4 3.4 31 937-967 8-38 (227)
287 3be4_A Adenylate kinase; malar 95.6 0.0057 1.9E-07 64.3 3.3 31 937-967 6-36 (217)
288 1ukz_A Uridylate kinase; trans 95.6 0.0075 2.6E-07 62.1 4.1 32 937-968 16-47 (203)
289 2vli_A Antibiotic resistance p 95.6 0.0061 2.1E-07 61.5 3.4 29 937-965 6-34 (183)
290 2r6a_A DNAB helicase, replicat 95.5 0.054 1.8E-06 63.6 11.8 36 934-969 201-240 (454)
291 1knq_A Gluconate kinase; ALFA/ 95.5 0.0097 3.3E-07 59.8 4.6 30 937-966 9-38 (175)
292 1ly1_A Polynucleotide kinase; 95.5 0.0066 2.2E-07 60.8 3.3 29 937-965 3-32 (181)
293 1zp6_A Hypothetical protein AT 95.5 0.0069 2.4E-07 61.6 3.5 36 937-972 10-45 (191)
294 2zts_A Putative uncharacterize 95.4 0.055 1.9E-06 56.8 10.3 36 934-969 28-67 (251)
295 2q6t_A DNAB replication FORK h 95.4 0.07 2.4E-06 62.4 12.0 36 934-969 198-237 (444)
296 1cr0_A DNA primase/helicase; R 95.4 0.055 1.9E-06 59.3 10.4 32 937-968 36-71 (296)
297 2pbr_A DTMP kinase, thymidylat 95.3 0.014 4.7E-07 59.2 5.0 31 938-968 2-35 (195)
298 1g5t_A COB(I)alamin adenosyltr 95.3 0.1 3.4E-06 54.9 11.5 117 937-1069 29-178 (196)
299 3kl4_A SRP54, signal recogniti 95.3 0.12 3.9E-06 60.7 13.3 73 935-1007 96-191 (433)
300 3crm_A TRNA delta(2)-isopenten 95.3 0.028 9.6E-07 63.5 7.8 34 937-970 6-39 (323)
301 2eyu_A Twitching motility prot 95.3 0.028 9.6E-07 61.4 7.6 71 935-1005 24-108 (261)
302 3sr0_A Adenylate kinase; phosp 95.3 0.012 4.1E-07 62.1 4.5 29 938-966 2-30 (206)
303 3umf_A Adenylate kinase; rossm 95.2 0.013 4.5E-07 62.5 4.8 34 937-972 30-63 (217)
304 1e4v_A Adenylate kinase; trans 95.2 0.0093 3.2E-07 62.3 3.5 30 938-967 2-31 (214)
305 1nks_A Adenylate kinase; therm 95.2 0.011 3.9E-07 59.6 3.9 34 938-971 3-39 (194)
306 4eun_A Thermoresistant glucoki 95.2 0.015 5.2E-07 60.1 4.9 30 936-965 29-58 (200)
307 1zak_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 62.1 3.9 30 937-966 6-35 (222)
308 2pez_A Bifunctional 3'-phospho 95.2 0.019 6.3E-07 58.1 5.5 35 937-971 6-43 (179)
309 2fz4_A DNA repair protein RAD2 95.1 0.039 1.3E-06 59.0 8.1 33 938-970 110-142 (237)
310 2jaq_A Deoxyguanosine kinase; 95.0 0.015 5E-07 59.4 4.2 29 938-966 2-30 (205)
311 2px0_A Flagellar biosynthesis 95.0 0.11 3.7E-06 57.8 11.3 36 935-970 104-143 (296)
312 2ewv_A Twitching motility prot 94.9 0.033 1.1E-06 64.0 7.2 71 935-1005 135-219 (372)
313 2xb4_A Adenylate kinase; ATP-b 94.9 0.017 5.8E-07 61.0 4.4 30 938-967 2-31 (223)
314 1cke_A CK, MSSA, protein (cyti 94.9 0.018 6.1E-07 60.2 4.5 30 937-966 6-35 (227)
315 2z0h_A DTMP kinase, thymidylat 94.9 0.022 7.4E-07 58.0 5.0 31 939-969 3-36 (197)
316 3uie_A Adenylyl-sulfate kinase 94.8 0.023 7.9E-07 58.7 5.0 36 937-972 26-64 (200)
317 2if2_A Dephospho-COA kinase; a 94.7 0.013 4.6E-07 60.3 3.1 30 938-968 3-32 (204)
318 1p9r_A General secretion pathw 94.7 0.11 3.9E-06 60.5 11.2 94 897-1005 143-246 (418)
319 2v54_A DTMP kinase, thymidylat 94.7 0.02 7E-07 58.6 4.4 33 937-969 5-38 (204)
320 2gxq_A Heat resistant RNA depe 94.7 0.11 3.8E-06 53.1 9.8 23 937-959 39-62 (207)
321 2ga8_A Hypothetical 39.9 kDa p 94.7 0.016 5.4E-07 66.3 3.6 30 937-966 25-54 (359)
322 3ake_A Cytidylate kinase; CMP 94.6 0.022 7.5E-07 58.4 4.4 31 938-968 4-34 (208)
323 3b6e_A Interferon-induced heli 94.6 0.089 3E-06 53.9 8.8 24 937-960 49-72 (216)
324 3bgw_A DNAB-like replicative h 94.5 0.19 6.5E-06 59.0 12.5 36 934-969 195-233 (444)
325 1q57_A DNA primase/helicase; d 94.5 0.13 4.4E-06 61.0 11.1 35 935-969 241-279 (503)
326 4gp7_A Metallophosphoesterase; 94.4 0.066 2.3E-06 54.1 7.4 19 937-955 10-28 (171)
327 2yvu_A Probable adenylyl-sulfa 94.4 0.035 1.2E-06 56.4 5.4 37 936-972 13-52 (186)
328 2plr_A DTMP kinase, probable t 94.4 0.038 1.3E-06 56.7 5.6 31 937-967 5-37 (213)
329 1uf9_A TT1252 protein; P-loop, 94.4 0.02 6.7E-07 58.6 3.4 30 937-967 9-38 (203)
330 2wwf_A Thymidilate kinase, put 94.3 0.015 5.2E-07 60.0 2.3 29 937-965 11-39 (212)
331 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.025 8.4E-07 67.6 4.4 30 747-776 166-196 (500)
332 1vt4_I APAF-1 related killer D 94.3 0.41 1.4E-05 61.8 15.4 43 904-959 131-173 (1221)
333 2bbw_A Adenylate kinase 4, AK4 94.3 0.034 1.1E-06 59.4 4.9 30 937-966 28-57 (246)
334 2grj_A Dephospho-COA kinase; T 94.3 0.024 8.3E-07 59.1 3.7 31 938-968 14-44 (192)
335 3a8t_A Adenylate isopentenyltr 94.2 0.02 7E-07 65.0 3.3 34 937-970 41-74 (339)
336 2dzn_B 26S protease regulatory 94.2 0.0042 1.4E-07 56.0 -2.0 46 766-815 1-46 (82)
337 1jjv_A Dephospho-COA kinase; P 94.2 0.026 8.8E-07 58.3 3.7 28 938-966 4-31 (206)
338 1qde_A EIF4A, translation init 94.1 0.22 7.4E-06 51.7 10.7 60 897-959 13-75 (224)
339 1uj2_A Uridine-cytidine kinase 94.1 0.044 1.5E-06 58.8 5.6 38 937-974 23-68 (252)
340 3r20_A Cytidylate kinase; stru 94.1 0.036 1.2E-06 59.8 4.8 30 937-966 10-39 (233)
341 1nn5_A Similar to deoxythymidy 94.1 0.019 6.4E-07 59.3 2.4 25 937-961 10-34 (215)
342 3foz_A TRNA delta(2)-isopenten 94.0 0.023 7.8E-07 63.9 3.0 36 937-972 11-46 (316)
343 3nwj_A ATSK2; P loop, shikimat 94.0 0.035 1.2E-06 60.3 4.5 32 937-968 49-80 (250)
344 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.048 1.6E-06 61.6 5.6 69 937-1005 172-250 (330)
345 4e22_A Cytidylate kinase; P-lo 93.9 0.046 1.6E-06 59.0 5.1 30 937-966 28-57 (252)
346 1w36_D RECD, exodeoxyribonucle 93.9 0.1 3.6E-06 63.6 8.8 24 937-960 165-188 (608)
347 1vec_A ATP-dependent RNA helic 93.8 0.14 4.9E-06 52.3 8.4 18 937-954 41-58 (206)
348 2gno_A DNA polymerase III, gam 93.6 0.086 2.9E-06 58.9 6.8 124 598-776 20-152 (305)
349 1vht_A Dephospho-COA kinase; s 93.5 0.037 1.3E-06 57.7 3.5 30 937-967 5-34 (218)
350 2yhs_A FTSY, cell division pro 93.5 0.52 1.8E-05 56.1 13.5 25 936-960 293-317 (503)
351 2h92_A Cytidylate kinase; ross 93.5 0.042 1.4E-06 57.1 3.8 32 937-968 4-35 (219)
352 1q3t_A Cytidylate kinase; nucl 93.4 0.062 2.1E-06 57.0 5.1 30 937-966 17-46 (236)
353 3d3q_A TRNA delta(2)-isopenten 93.3 0.044 1.5E-06 62.3 3.8 32 938-969 9-40 (340)
354 2qor_A Guanylate kinase; phosp 93.3 0.049 1.7E-06 56.4 3.8 25 937-961 13-37 (204)
355 1ltq_A Polynucleotide kinase; 93.2 0.035 1.2E-06 60.8 2.8 31 937-967 3-34 (301)
356 1t6n_A Probable ATP-dependent 93.2 0.65 2.2E-05 48.0 12.4 24 937-960 52-75 (220)
357 2pl3_A Probable ATP-dependent 93.2 0.28 9.7E-06 51.4 9.7 56 897-953 24-79 (236)
358 4a1f_A DNAB helicase, replicat 93.2 0.18 6.1E-06 57.3 8.5 36 934-969 44-82 (338)
359 3zvl_A Bifunctional polynucleo 93.1 0.068 2.3E-06 62.1 5.2 30 937-966 259-288 (416)
360 3iuy_A Probable ATP-dependent 93.1 0.26 9E-06 51.4 9.3 58 895-953 16-74 (228)
361 1hv8_A Putative ATP-dependent 93.1 0.21 7.2E-06 55.1 8.9 63 898-960 6-68 (367)
362 2f6r_A COA synthase, bifunctio 93.1 0.049 1.7E-06 59.9 3.6 30 937-967 76-105 (281)
363 2qt1_A Nicotinamide riboside k 93.1 0.037 1.3E-06 57.3 2.5 31 937-967 22-53 (207)
364 3exa_A TRNA delta(2)-isopenten 93.0 0.051 1.8E-06 61.2 3.8 33 938-970 5-37 (322)
365 2oap_1 GSPE-2, type II secreti 92.9 0.078 2.7E-06 63.5 5.4 69 937-1005 261-343 (511)
366 1m7g_A Adenylylsulfate kinase; 92.9 0.076 2.6E-06 55.3 4.7 36 937-972 26-65 (211)
367 3fdi_A Uncharacterized protein 92.9 0.064 2.2E-06 56.1 4.0 29 938-966 8-36 (201)
368 2w58_A DNAI, primosome compone 92.8 0.081 2.8E-06 54.3 4.6 83 375-468 6-91 (202)
369 2bdt_A BH3686; alpha-beta prot 92.7 0.071 2.4E-06 54.2 4.1 31 938-969 4-34 (189)
370 1xx6_A Thymidine kinase; NESG, 92.6 0.41 1.4E-05 49.8 9.8 69 937-1007 9-93 (191)
371 3llm_A ATP-dependent RNA helic 92.6 0.57 2E-05 49.5 11.1 21 937-957 77-97 (235)
372 1rz3_A Hypothetical protein rb 92.5 0.26 8.9E-06 50.9 8.0 35 937-971 23-60 (201)
373 3eph_A TRNA isopentenyltransfe 92.5 0.073 2.5E-06 61.9 4.2 33 937-969 3-35 (409)
374 2axn_A 6-phosphofructo-2-kinas 92.4 0.16 5.5E-06 60.8 7.1 36 937-972 36-74 (520)
375 1zu4_A FTSY; GTPase, signal re 92.4 1.2 4.1E-05 50.0 13.8 35 935-969 104-141 (320)
376 2j37_W Signal recognition part 92.3 0.26 9E-06 58.8 8.9 73 935-1007 100-195 (504)
377 1sky_E F1-ATPase, F1-ATP synth 92.3 0.3 1E-05 57.8 9.1 24 937-960 152-175 (473)
378 2xxa_A Signal recognition part 92.3 0.28 9.5E-06 57.5 8.8 73 934-1006 98-194 (433)
379 2j41_A Guanylate kinase; GMP, 92.2 0.073 2.5E-06 54.4 3.5 24 937-960 7-30 (207)
380 1j8m_F SRP54, signal recogniti 92.2 0.42 1.4E-05 53.1 9.8 72 936-1007 98-192 (297)
381 1kgd_A CASK, peripheral plasma 92.2 0.089 3E-06 53.5 4.0 25 937-961 6-30 (180)
382 3tau_A Guanylate kinase, GMP k 92.1 0.078 2.7E-06 55.3 3.5 25 937-961 9-33 (208)
383 2xau_A PRE-mRNA-splicing facto 92.1 0.55 1.9E-05 58.9 11.7 24 937-960 110-133 (773)
384 2qmh_A HPR kinase/phosphorylas 92.0 0.062 2.1E-06 56.8 2.5 35 937-972 35-69 (205)
385 3asz_A Uridine kinase; cytidin 91.9 0.084 2.9E-06 54.5 3.5 25 937-961 7-31 (211)
386 4b3f_X DNA-binding protein smu 91.9 0.54 1.8E-05 57.6 11.2 48 905-968 190-240 (646)
387 2v3c_C SRP54, signal recogniti 91.8 0.14 4.9E-06 59.9 5.7 35 936-970 99-136 (432)
388 3tr0_A Guanylate kinase, GMP k 91.7 0.11 3.8E-06 53.1 4.1 25 937-961 8-32 (205)
389 1ls1_A Signal recognition part 91.6 0.4 1.4E-05 53.1 8.7 73 935-1007 97-192 (295)
390 3n70_A Transport activator; si 91.6 0.099 3.4E-06 51.3 3.4 40 430-472 22-64 (145)
391 1ex7_A Guanylate kinase; subst 91.6 0.14 4.7E-06 53.3 4.6 25 938-962 3-27 (186)
392 3fe2_A Probable ATP-dependent 91.5 0.51 1.8E-05 49.9 9.2 55 895-953 26-83 (242)
393 3e70_C DPA, signal recognition 91.5 0.37 1.3E-05 54.3 8.5 26 935-960 128-153 (328)
394 1w4r_A Thymidine kinase; type 91.5 0.16 5.3E-06 53.4 4.9 33 937-969 21-56 (195)
395 3ber_A Probable ATP-dependent 91.3 0.71 2.4E-05 49.3 10.1 18 937-954 81-98 (249)
396 2ffh_A Protein (FFH); SRP54, s 91.2 0.77 2.6E-05 53.7 11.0 73 935-1007 97-192 (425)
397 3c8u_A Fructokinase; YP_612366 91.1 0.12 4.2E-06 53.6 3.7 26 936-961 22-47 (208)
398 1lvg_A Guanylate kinase, GMP k 90.9 0.13 4.4E-06 53.3 3.6 25 937-961 5-29 (198)
399 3lxw_A GTPase IMAP family memb 90.9 0.58 2E-05 50.1 8.8 24 936-959 21-44 (247)
400 1x6v_B Bifunctional 3'-phospho 90.9 0.16 5.4E-06 62.3 4.8 35 937-971 53-90 (630)
401 1tf7_A KAIC; homohexamer, hexa 90.8 0.62 2.1E-05 55.6 9.9 71 937-1007 282-383 (525)
402 1c9k_A COBU, adenosylcobinamid 90.8 0.21 7.1E-06 51.8 5.1 32 939-971 2-33 (180)
403 3gmt_A Adenylate kinase; ssgci 90.8 0.17 5.9E-06 54.4 4.5 31 937-967 9-39 (230)
404 3thx_B DNA mismatch repair pro 90.7 0.59 2E-05 59.7 10.0 23 937-959 674-696 (918)
405 2zj8_A DNA helicase, putative 90.7 1 3.5E-05 55.7 12.0 18 937-954 40-57 (720)
406 2va8_A SSO2462, SKI2-type heli 90.6 1.1 3.7E-05 55.3 12.0 57 898-956 8-66 (715)
407 3hdt_A Putative kinase; struct 90.6 0.15 5.1E-06 54.4 3.8 30 937-966 15-44 (223)
408 3a00_A Guanylate kinase, GMP k 90.5 0.15 5.2E-06 52.0 3.7 24 938-961 3-26 (186)
409 1q0u_A Bstdead; DEAD protein, 90.5 0.52 1.8E-05 48.9 7.8 18 937-954 42-59 (219)
410 1r8s_A ADP-ribosylation factor 90.4 1.6 5.5E-05 42.1 10.9 23 938-960 2-24 (164)
411 3ice_A Transcription terminati 90.4 0.6 2.1E-05 54.1 8.8 24 937-960 175-198 (422)
412 1xti_A Probable ATP-dependent 90.4 1.7 5.8E-05 48.4 12.5 58 898-958 8-67 (391)
413 1gtv_A TMK, thymidylate kinase 89.9 0.083 2.9E-06 54.4 1.1 24 938-961 2-25 (214)
414 2oxc_A Probable ATP-dependent 89.9 0.88 3E-05 47.7 9.0 53 898-953 24-78 (230)
415 1tf7_A KAIC; homohexamer, hexa 89.8 1.2 4E-05 53.2 11.1 34 936-969 39-76 (525)
416 3oiy_A Reverse gyrase helicase 89.8 0.49 1.7E-05 53.9 7.5 20 937-956 37-56 (414)
417 2gza_A Type IV secretion syste 89.8 0.34 1.2E-05 55.2 6.2 69 937-1005 176-262 (361)
418 1zd9_A ADP-ribosylation factor 89.7 0.96 3.3E-05 45.4 8.9 24 936-959 22-45 (188)
419 2j9r_A Thymidine kinase; TK1, 89.7 0.67 2.3E-05 49.3 7.9 30 939-968 31-63 (214)
420 3ney_A 55 kDa erythrocyte memb 89.5 0.22 7.4E-06 52.3 4.0 25 937-961 20-44 (197)
421 3thx_A DNA mismatch repair pro 89.5 0.94 3.2E-05 57.9 10.4 22 937-958 663-684 (934)
422 4eaq_A DTMP kinase, thymidylat 89.4 0.33 1.1E-05 51.6 5.4 31 937-967 27-59 (229)
423 1a7j_A Phosphoribulokinase; tr 89.4 0.14 4.7E-06 56.7 2.4 36 938-973 7-45 (290)
424 3dzd_A Transcriptional regulat 89.4 1.4 4.6E-05 50.4 10.7 42 429-472 149-192 (368)
425 3lxx_A GTPase IMAP family memb 89.3 1.4 4.9E-05 46.3 10.2 24 937-960 30-53 (239)
426 1wms_A RAB-9, RAB9, RAS-relate 89.1 1.2 4.2E-05 43.5 8.9 23 937-959 8-30 (177)
427 3tbk_A RIG-I helicase domain; 89.1 1.4 4.9E-05 51.4 11.0 24 937-960 20-43 (555)
428 2jeo_A Uridine-cytidine kinase 89.0 0.23 7.7E-06 53.0 3.7 27 937-963 26-52 (245)
429 3p32_A Probable GTPase RV1496/ 88.9 0.79 2.7E-05 51.9 8.3 32 937-968 80-114 (355)
430 3co5_A Putative two-component 88.8 0.045 1.5E-06 53.7 -1.8 35 431-468 26-60 (143)
431 1z6g_A Guanylate kinase; struc 88.8 0.26 8.7E-06 51.9 3.9 24 937-960 24-47 (218)
432 1znw_A Guanylate kinase, GMP k 88.7 0.28 9.4E-06 50.9 4.0 25 937-961 21-45 (207)
433 1fzq_A ADP-ribosylation factor 88.6 1.1 3.7E-05 44.9 8.3 23 937-959 17-39 (181)
434 1xjc_A MOBB protein homolog; s 88.6 0.44 1.5E-05 48.8 5.4 32 937-968 5-39 (169)
435 3pie_A 5'->3' exoribonuclease 88.5 0.33 1.1E-05 62.4 5.3 64 547-621 1062-1125(1155)
436 1htw_A HI0065; nucleotide-bind 88.5 0.32 1.1E-05 49.0 4.2 24 937-960 34-57 (158)
437 1odf_A YGR205W, hypothetical 3 88.5 0.21 7E-06 55.4 3.0 25 937-961 32-56 (290)
438 3b9q_A Chloroplast SRP recepto 88.4 0.48 1.6E-05 52.7 5.9 26 935-960 99-124 (302)
439 3crm_A TRNA delta(2)-isopenten 88.3 0.29 9.8E-06 55.3 4.0 41 432-474 5-45 (323)
440 3h1t_A Type I site-specific re 88.1 0.76 2.6E-05 55.2 7.9 24 937-960 199-222 (590)
441 1m8p_A Sulfate adenylyltransfe 88.0 0.37 1.2E-05 58.5 5.0 36 937-972 397-436 (573)
442 2fwr_A DNA repair protein RAD2 87.8 0.41 1.4E-05 55.6 5.2 33 938-970 110-142 (472)
443 3trf_A Shikimate kinase, SK; a 87.7 0.27 9.2E-06 49.5 3.1 34 432-467 5-38 (185)
444 1s96_A Guanylate kinase, GMP k 87.6 0.35 1.2E-05 51.3 4.0 25 937-961 17-41 (219)
445 3q72_A GTP-binding protein RAD 87.4 0.81 2.8E-05 44.3 6.3 21 937-957 3-23 (166)
446 3k53_A Ferrous iron transport 87.4 0.69 2.4E-05 50.0 6.3 23 937-959 4-26 (271)
447 2gj8_A MNME, tRNA modification 87.4 0.69 2.4E-05 46.1 5.9 23 937-959 5-27 (172)
448 3eiq_A Eukaryotic initiation f 87.3 0.96 3.3E-05 50.9 7.7 57 895-954 37-95 (414)
449 2v9p_A Replication protein E1; 87.2 0.37 1.3E-05 53.9 4.1 30 935-964 125-154 (305)
450 2og2_A Putative signal recogni 87.2 0.59 2E-05 53.4 5.9 26 935-960 156-181 (359)
451 4edh_A DTMP kinase, thymidylat 87.2 0.49 1.7E-05 49.9 4.9 32 937-968 7-41 (213)
452 3dkp_A Probable ATP-dependent 87.2 1.2 4E-05 46.9 7.8 17 937-953 67-83 (245)
453 3tqf_A HPR(Ser) kinase; transf 87.1 0.42 1.4E-05 49.5 4.1 29 937-966 17-45 (181)
454 1p5z_B DCK, deoxycytidine kina 87.0 0.17 5.9E-06 54.4 1.3 30 936-965 24-54 (263)
455 2ged_A SR-beta, signal recogni 87.0 0.64 2.2E-05 46.6 5.4 25 936-960 48-72 (193)
456 3dz8_A RAS-related protein RAB 87.0 3 0.0001 41.8 10.4 24 937-960 24-47 (191)
457 1m2o_B GTP-binding protein SAR 86.8 0.92 3.2E-05 45.9 6.5 23 937-959 24-46 (190)
458 1wb9_A DNA mismatch repair pro 86.8 2.5 8.6E-05 53.2 11.7 24 936-959 607-630 (800)
459 1wp9_A ATP-dependent RNA helic 86.7 1.8 6.2E-05 48.9 9.6 32 938-969 25-60 (494)
460 3foz_A TRNA delta(2)-isopenten 86.7 0.38 1.3E-05 54.1 3.8 41 432-474 10-50 (316)
461 3ec2_A DNA replication protein 86.7 0.51 1.7E-05 47.4 4.5 34 432-467 38-75 (180)
462 3a8t_A Adenylate isopentenyltr 86.7 0.34 1.2E-05 55.0 3.4 39 434-474 42-80 (339)
463 3lnc_A Guanylate kinase, GMP k 86.5 0.25 8.6E-06 52.0 2.2 24 937-960 28-52 (231)
464 2ocp_A DGK, deoxyguanosine kin 86.5 0.46 1.6E-05 50.4 4.2 27 937-963 3-30 (241)
465 1qhx_A CPT, protein (chloramph 86.3 0.45 1.5E-05 47.4 3.8 33 433-467 4-36 (178)
466 3ihw_A Centg3; RAS, centaurin, 86.3 2 6.7E-05 43.2 8.6 24 937-960 21-44 (184)
467 1bif_A 6-phosphofructo-2-kinas 86.2 0.25 8.6E-06 58.1 2.2 26 937-962 40-65 (469)
468 1z06_A RAS-related protein RAB 85.9 3 0.0001 41.6 9.7 24 936-959 20-43 (189)
469 2fh5_B SR-beta, signal recogni 85.9 2.9 9.8E-05 42.6 9.7 24 937-960 8-31 (214)
470 1rj9_A FTSY, signal recognitio 85.8 0.51 1.7E-05 52.6 4.3 25 936-960 102-126 (304)
471 2qgz_A Helicase loader, putati 85.8 0.52 1.8E-05 52.4 4.4 37 432-470 152-192 (308)
472 2p6r_A Afuhel308 helicase; pro 85.7 1.3 4.5E-05 54.5 8.3 19 937-955 41-59 (702)
473 3kta_A Chromosome segregation 85.7 0.44 1.5E-05 47.9 3.4 24 938-961 28-51 (182)
474 3aez_A Pantothenate kinase; tr 85.6 0.51 1.7E-05 52.8 4.2 27 935-961 89-115 (312)
475 1sq5_A Pantothenate kinase; P- 85.6 0.76 2.6E-05 51.0 5.6 25 937-961 81-105 (308)
476 2iyv_A Shikimate kinase, SK; t 85.6 0.41 1.4E-05 48.1 3.1 32 433-466 3-34 (184)
477 2e87_A Hypothetical protein PH 85.3 4 0.00014 46.0 11.5 25 936-960 167-191 (357)
478 4dkx_A RAS-related protein RAB 85.3 1.7 5.7E-05 45.8 7.8 22 938-959 15-36 (216)
479 2dyk_A GTP-binding protein; GT 85.3 0.52 1.8E-05 45.4 3.6 23 937-959 2-24 (161)
480 2qm8_A GTPase/ATPase; G protei 85.3 1.7 5.8E-05 49.0 8.3 24 937-960 56-79 (337)
481 3tqc_A Pantothenate kinase; bi 85.1 1.1 3.8E-05 50.4 6.6 25 937-961 93-117 (321)
482 1f6b_A SAR1; gtpases, N-termin 85.1 0.89 3.1E-05 46.4 5.4 22 937-958 26-47 (198)
483 1nrj_B SR-beta, signal recogni 85.0 0.59 2E-05 48.0 4.0 24 937-960 13-36 (218)
484 2ze6_A Isopentenyl transferase 85.0 0.52 1.8E-05 50.8 3.8 36 434-471 3-38 (253)
485 1np6_A Molybdopterin-guanine d 84.9 0.53 1.8E-05 48.2 3.6 24 937-960 7-30 (174)
486 2f7s_A C25KG, RAS-related prot 84.9 2.9 0.0001 42.6 9.3 23 937-959 26-48 (217)
487 2gk6_A Regulator of nonsense t 84.8 0.82 2.8E-05 55.8 5.8 23 938-960 197-219 (624)
488 2db3_A ATP-dependent RNA helic 84.7 2.5 8.5E-05 48.8 9.6 52 897-952 55-109 (434)
489 4i1u_A Dephospho-COA kinase; s 84.6 0.52 1.8E-05 50.0 3.5 30 938-968 11-40 (210)
490 2wsm_A Hydrogenase expression/ 84.6 0.73 2.5E-05 47.5 4.5 25 937-961 31-55 (221)
491 1via_A Shikimate kinase; struc 84.5 0.47 1.6E-05 47.4 3.0 32 433-466 5-36 (175)
492 3iij_A Coilin-interacting nucl 84.4 0.52 1.8E-05 47.3 3.2 33 432-466 11-43 (180)
493 3iby_A Ferrous iron transport 84.4 1.2 4.1E-05 48.1 6.3 23 937-959 2-24 (256)
494 2orv_A Thymidine kinase; TP4A 84.4 2.6 8.9E-05 45.4 8.8 67 938-1007 21-102 (234)
495 1upt_A ARL1, ADP-ribosylation 84.3 0.73 2.5E-05 44.8 4.2 24 936-959 7-30 (171)
496 3ly5_A ATP-dependent RNA helic 84.3 1.9 6.4E-05 46.4 7.8 18 937-954 92-109 (262)
497 1z2a_A RAS-related protein RAB 84.1 0.63 2.2E-05 45.0 3.6 24 937-960 6-29 (168)
498 2cdn_A Adenylate kinase; phosp 84.1 0.55 1.9E-05 48.1 3.3 32 433-466 21-52 (201)
499 2f9l_A RAB11B, member RAS onco 84.0 0.59 2E-05 47.5 3.5 23 937-959 6-28 (199)
500 3def_A T7I23.11 protein; chlor 84.0 2.5 8.6E-05 45.3 8.6 24 937-960 37-60 (262)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.3e-62 Score=607.11 Aligned_cols=491 Identities=28% Similarity=0.473 Sum_probs=371.5
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
-+|+|++...+ ++.|..|.+.+..+|+|+++.+.. -...+++|||+|||| +++++||||+|+++|+.|+.++.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~--g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSC--CCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHHHhhc--CCCCCCeEEEECCCC--CCHHHHHHHHHHHhCCeEEEEEhH
Confidence 36899999998 999999999999999999985321 235678999999999 999999999999999999999874
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 001150 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1138)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1138)
.|.+
T Consensus 273 ~l~s---------------------------------------------------------------------------- 276 (806)
T 3cf2_A 273 EIMS---------------------------------------------------------------------------- 276 (806)
T ss_dssp HHHS----------------------------------------------------------------------------
T ss_pred Hhhc----------------------------------------------------------------------------
Confidence 4432
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 001150 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1138)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1138)
T Consensus 277 -------------------------------------------------------------------------------- 276 (806)
T 3cf2_A 277 -------------------------------------------------------------------------------- 276 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcC----CcchhhHHHHHH----hcC--CCcEEEEeecc
Q 001150 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSRL----EKL--PDKVIVIGSHT 698 (1138)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~----~~~~~~~lk~~L----~~l--~g~VvvIGstt 698 (1138)
+|+++ .+..++.+|+.+.. .+|+||||||||.++.. ..+....+...| +.+ +++|+|||+||
T Consensus 277 ---k~~ge--se~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 277 ---KLAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp ---SCTTH--HHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred ---ccchH--HHHHHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 23344 56678999999988 99999999999998752 223333344333 332 46899999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 699 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 699 ~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+++.+|++ |||||| |+++|+|++|+.++|.+||+.++..
T Consensus 349 ~~d~LD~A-------LrR~GR----------------------------------Fd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 349 RPNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp STTTSCTT-------TTSTTS----------------------------------SCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred ChhhcCHH-------HhCCcc----------------------------------cceEEecCCCCHHHHHHHHHHHhcC
Confidence 99999999 999999 8899999999999999999988854
Q ss_pred hhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCC---Ccccccccchhhhhh
Q 001150 779 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD---PDARLVLSCESIQYG 855 (1138)
Q Consensus 779 ~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~---~~~kl~l~~edl~~a 855 (1138)
.....+++....+..++||.|+||..+|.++.+......... +....... ....+.+..++|..+
T Consensus 388 ----~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~--------i~~~~~~~~~e~~~~~~v~~~Df~~A 455 (806)
T 3cf2_A 388 ----MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL--------IDLEDETIDAEVMNSLAVTMDDFRWA 455 (806)
T ss_dssp ----SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHH--------GGGTCCCCSHHHHHHCEECTTHHHHH
T ss_pred ----CCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc--------ccccccccchhhhccceeeHHHHHHH
Confidence 455667888888899999999999999997755322211110 01001111 112344566666554
Q ss_pred HhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCC
Q 001150 856 IGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP 935 (1138)
Q Consensus 856 l~~lq~i~~~~k~~~~s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP 935 (1138)
+...+ |.. . .......+.++|++++|++++++.|++.+.+|+.+++.|.+.+. +|
T Consensus 456 l~~~~---ps~--------------------~-r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~-~~ 510 (806)
T 3cf2_A 456 LSQSN---PSA--------------------L-RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TP 510 (806)
T ss_dssp HSSSS---CCC--------------------C-CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC-CC
T ss_pred HHhCC---Ccc--------------------c-ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCC-CC
Confidence 43111 100 0 01122335689999999999999999999999999999987664 56
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc-
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP- 1014 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~- 1014 (1138)
++++|||||||||||++|+++|++++.+|+.++.++++++|+|++++.++++|..|++.+||||||||||.|++.|...
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~ 590 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-------
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred -chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCC
Q 001150 1015 -GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSP 1091 (1138)
Q Consensus 1015 -~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~ 1091 (1138)
..+...++++++||..|+++... .+|+||||||+|+.||++++| ||+..|+|++|+.++|.+||+.++++..+..
T Consensus 591 ~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~ 668 (806)
T 3cf2_A 591 GDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668 (806)
T ss_dssp -------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC
T ss_pred CCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC
Confidence 34557789999999999998654 679999999999999999999 9999999999999999999999999988889
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhh
Q 001150 1092 DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1138)
Q Consensus 1092 dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~e 1129 (1138)
++|+..||+.|+||||+||.++|++|++.|+++.++..
T Consensus 669 ~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~ 706 (806)
T 3cf2_A 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp C----------------CHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987643
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=6.5e-43 Score=437.98 Aligned_cols=485 Identities=27% Similarity=0.469 Sum_probs=365.3
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 001150 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1138)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1138)
.|+|+++-.+ +..+..|.+.+..+|+|+++.+.. -...+..|||+||+| +++++||||||+..+..++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l--~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSS--CCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHHHhc--CCCCCCeEEEECcCC--CCHHHHHHHHHHHcCCcEEEEEchH
Confidence 5889998887 899999999999999999885321 135567899999999 9999999999999999998888644
Q ss_pred ccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 001150 470 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 549 (1138)
Q Consensus 470 ~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 549 (1138)
+.+.
T Consensus 274 l~~~---------------------------------------------------------------------------- 277 (806)
T 1ypw_A 274 IMSK---------------------------------------------------------------------------- 277 (806)
T ss_dssp HSSS----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 3320
Q ss_pred ccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccccc
Q 001150 550 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 629 (1138)
Q Consensus 550 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 629 (1138)
T Consensus 278 -------------------------------------------------------------------------------- 277 (806)
T 1ypw_A 278 -------------------------------------------------------------------------------- 277 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC----cchhhH----HHHHHhc--CCCcEEEEeeccc
Q 001150 630 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYST----FKSRLEK--LPDKVIVIGSHTH 699 (1138)
Q Consensus 630 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~----~~~~~~----lk~~L~~--l~g~VvvIGstt~ 699 (1138)
|.++ ....+..+|+.+.. ..|.|||||||+.++... .+.... |...|+. ...+|+||+++|+
T Consensus 278 ---~~g~--~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~ 349 (806)
T 1ypw_A 278 ---LAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp ---STTH--HHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSC
T ss_pred ---hhhh--HHHHHHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCC
Confidence 0011 22346777777776 789999999999977532 222222 3333332 2468999999999
Q ss_pred CCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhh
Q 001150 700 TDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 779 (1138)
Q Consensus 700 ~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~ 779 (1138)
++..|++ |+|+|| |.+.+.+.+|+.+.|++||+.++++
T Consensus 350 ~~~ld~a-------l~r~gR----------------------------------f~~~i~i~~p~~~~r~~il~~~~~~- 387 (806)
T 1ypw_A 350 PNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN- 387 (806)
T ss_dssp TTTSCTT-------TTSTTS----------------------------------SCEEECCCCCCHHHHHHHHHHTTTT-
T ss_pred chhcCHH-------Hhcccc----------------------------------cccccccCCCCHHHHHHHHHHHHhc-
Confidence 9877777 677777 8789999999999999999987654
Q ss_pred hhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCC-------Ccccccccchhh
Q 001150 780 SETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-------PDARLVLSCESI 852 (1138)
Q Consensus 780 ~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~-------~~~kl~l~~edl 852 (1138)
+....+......+..+.++.++||..+|.++... ++.+.... .... ....+.+..+++
T Consensus 388 ---~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~-----------a~r~~~~~-i~~~~~~~~~~~~~~~~v~~~d~ 452 (806)
T 1ypw_A 388 ---MKLADDVDLEQVANETHGHVGADLAALCSEAALQ-----------AIRKKMDL-IDLEDETIDAEVMNSLAVTMDDF 452 (806)
T ss_dssp ---SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHH-----------HHHHTTTT-TSCHHHHCCHHHHTTCCCCTTHH
T ss_pred ---CCCcccchhHHHHHhhcCcchHHHHHHHHHHHHH-----------HHhhhccc-cchhhhccchhhhhhhhhhhhhh
Confidence 3444555666667778899999998887754321 11111000 0000 001112222222
Q ss_pred hhhHhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCC
Q 001150 853 QYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL 932 (1138)
Q Consensus 853 ~~al~~lq~i~~~~k~~~~s~k~~v~~~e~e~~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~ 932 (1138)
..++.. ..+ + .........+.++|++++|++++++.|.+.+.+++.+++.+...+.
T Consensus 453 ~~al~~---~~~-------s--------------~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~ 508 (806)
T 1ypw_A 453 RWALSQ---SNP-------S--------------ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM 508 (806)
T ss_dssp HHHHHH---SCC-------C--------------CCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC
T ss_pred hccccc---cCc-------h--------------hhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC
Confidence 221110 000 0 0001112334688999999999999999999999998888776554
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCC
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1012 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~ 1012 (1138)
.+..++||+||||||||+||+++|++++.+|+.++++++.+.|+|+.+..++.+|..++...|+||||||||.++..+.
T Consensus 509 -~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 587 (806)
T 1ypw_A 509 -TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp -CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTT
T ss_pred -CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhcc
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred Cc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCC
Q 001150 1013 NP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1138)
Q Consensus 1013 ~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~ 1088 (1138)
.. .......+++++|+..|++... ..+++||+|||.++.||++++| ||+..|+|+.|+.++|.+||+.++.+..
T Consensus 588 ~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~ 665 (806)
T 1ypw_A 588 GNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp TCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-
T ss_pred CCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC
Confidence 43 3345778999999999998754 3689999999999999999999 9999999999999999999999998888
Q ss_pred CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1089 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1089 l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+..++++..|+..++||+++||.++|+.|+..|+++.++.
T Consensus 666 ~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~ 705 (806)
T 1ypw_A 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp ---CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC---
T ss_pred CCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999987654
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-39 Score=370.36 Aligned_cols=227 Identities=35% Similarity=0.623 Sum_probs=211.5
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+. +|++|+|||||||||||+||+|+|++++.+|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 45799999999999999999999999999999988764 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
+|+|++++.++.+|..|+..+||||||||||.++++|... .......+++++||..||++.. ..+|+||||||+|+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChh
Confidence 9999999999999999999999999999999999877543 3345667889999999999865 46899999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.||++++| ||+..|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.|+++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999999999999999999999889999999999999999999999999999998865
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-38 Score=363.94 Aligned_cols=227 Identities=36% Similarity=0.651 Sum_probs=210.0
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+||+|++++++.|++.+.+|+.+++.|.+.+. +|++|||||||||||||+||+|+|++++.+|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45799999999999999999999999999999988764 45699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
+|+|+.++.++.+|..|+..+|+||||||||.+++.|... .......+++++||..++++.. ..+|+||||||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCChh
Confidence 9999999999999999999999999999999999887543 2234556788899999998754 36899999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.||++++| ||+..|+|++|+.++|.+||+.++.+..+..++|++.||..|+||||+||.++|++|++.|+++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999999999999999999999889999999999999999999999999999998865
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=361.16 Aligned_cols=227 Identities=34% Similarity=0.623 Sum_probs=210.8
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+||+|++++++.|++.+.+|+.+++.|.+.+. +|++|||||||||||||+||+|||++++.+|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 35799999999999999999999999999999988664 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
+|+|++++.++.+|..|+..+|+||||||||.++..|... +.......+++++|..|++... ..+|+||||||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCcc
Confidence 9999999999999999999999999999999999887543 3345667788999999998764 46899999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.||++++| ||+..|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||++||++|++.|+++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999 9999999999999999999999999998889999999999999999999999999999998875
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=361.59 Aligned_cols=228 Identities=34% Similarity=0.613 Sum_probs=211.8
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
..+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+. +|++|||||||||||||+||+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 356789999999999999999999999999999988764 4569999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcc--hHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
++|+|+.++.++.+|..|+..+||||||||||.+++.|.... .......++++||..|+++... .+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCc
Confidence 999999999999999999999999999999999998875533 2345677889999999998654 679999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
+.||++++| ||+..|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.|+++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999 9999999999999999999999999999889999999999999999999999999999999876
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=360.74 Aligned_cols=227 Identities=39% Similarity=0.688 Sum_probs=210.3
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+. +|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45799999999999999999999999999999988774 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
+|+|+++..++.+|..|+..+||||||||||.++++|... ........++++||..|+++... .+++||||||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 9999999999999999999999999999999999887543 23345677889999999998653 6799999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.||++++| ||+..|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|.+|++.|+++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998 6999999999999999999999999998889999999999999999999999999999998865
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-37 Score=356.50 Aligned_cols=227 Identities=37% Similarity=0.637 Sum_probs=210.0
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|+||+|++++++.|++.+.+|+.+++.|.+.+. +|++|+|||||||||||+||+|+|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 35789999999999999999999999999999988765 55699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
+|+|+.+..++.+|..|+..+||||||||||.+++.|... .......+++++||..|+++... .+++||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 9999999999999999999999999999999999887432 23345678899999999998654 6799999999999
Q ss_pred CCcHHHHh--cCCceEEec-CCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVN-LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~-lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.||++++| ||+..|+|+ +|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.|+++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 99999999 999999995 8999999999999999999889999999999999999999999999999999875
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.7e-33 Score=345.41 Aligned_cols=229 Identities=41% Similarity=0.679 Sum_probs=212.8
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+.++|+||+|++++++.|++.+.+|+.+|+.|...+. +|++|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4789999999999999999999999999999987764 566999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld 1055 (1138)
|.|+.+..++.+|..|++++|+||||||||.|++.+.... ....++++++|+..|+++... .+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998875432 345578899999999998654 6799999999999999
Q ss_pred HHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1056 ~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
++++| ||+..|+|+.|+.++|.+||+.++.+..+..++++..||..|+||+|+||.+||.+|++.++++....
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~ 429 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 99999 99999999999999999999999999888899999999999999999999999999999999987654
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=297.45 Aligned_cols=229 Identities=45% Similarity=0.770 Sum_probs=208.1
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCceEEEecccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 974 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-g~~fi~Id~seL~s 974 (1138)
+.++|+||+|++++++.|++.+.+++.+++.|.. ...|++++||+||||||||+||+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4689999999999999999999999999998863 24677899999999999999999999999 99999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L 1054 (1138)
.|.|..+..++.+|..++...|+||||||||.+.+.+... ......+++++|+..++++... ..+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998776543 3456778899999999987542 4789999999999999
Q ss_pred cHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1055 d~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+++++|||+..+.++.|+.++|.+||+.++.+.... .+.++..|+..++||+|+||.+||++|++.++++.+..
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999877654 67889999999999999999999999999999999865
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=3.5e-30 Score=290.00 Aligned_cols=230 Identities=43% Similarity=0.768 Sum_probs=204.8
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+.++|++++|++.+++.|++.+.+++..++.|... ..|++++||+||||||||+||+++|++++.+|+.++++++.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 346889999999999999999999999888887653 456789999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L 1054 (1138)
.+.|..+..++.+|..++...|+||||||||.|.+.+.. ......+++.++++..+++.... ..+++||+|||.++.|
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGS
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhC
Confidence 999999999999999999999999999999999876532 23345677888999999887533 4689999999999999
Q ss_pred cHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1055 d~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
++++++||+..++++.|+.++|.+||+.++.+.... .+.++..|+..++||+++||.++|+.|++.++++..+.
T Consensus 168 d~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 168 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred CHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999887654 67789999999999999999999999999999999865
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=9.6e-30 Score=290.90 Aligned_cols=234 Identities=43% Similarity=0.758 Sum_probs=199.1
Q ss_pred CCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 891 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 891 i~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
+....+.++|++|+|++.+++.|++.+.+++..++.|... ..|++++||+||||||||+||+++|++++.+|+.++++
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 3334557899999999999999999999999999888653 46678999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 971 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 971 eL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
++.+.+.|..+..++.+|..++...|+||||||||.|.+.+.. ......+++.++|+..|+++... ..+++||+|||.
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~ 196 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNI 196 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESC
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCC
Confidence 9999999999999999999999999999999999999866533 23456678889999999887532 467999999999
Q ss_pred CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
++.|++++++||+..++++.|+.++|.+||+.++...... .+.++..|+..++||+|+||.++|..|++.++++....
T Consensus 197 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 197 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887643 67889999999999999999999999999999998754
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.9e-29 Score=296.72 Aligned_cols=236 Identities=44% Similarity=0.753 Sum_probs=200.1
Q ss_pred CcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCceEEE
Q 001150 889 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINI 967 (1138)
Q Consensus 889 ~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-g~~fi~I 967 (1138)
..+....+.++|+||+|++.+++.|.+.+.+++.+++.|... ..|++++||+||||||||+||+++|+++ +.+|+.+
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 334445567899999999999999999999998888887632 4566899999999999999999999999 9999999
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEe
Q 001150 968 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 968 d~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaT 1047 (1138)
+++++.+.|.|..+..++.+|..++...|+||||||||.+++.+... .....++++++|+..++++... ..+++||+|
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~a 277 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD-NDGILVLGA 277 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCcccC-CCCEEEEec
Confidence 99999999999999999999999999999999999999998766443 3445678889999999987532 478999999
Q ss_pred cCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 001150 1048 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1048 TN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eii 1126 (1138)
||.++.|+++++|||+.++.+++|+.++|..||+.++...+.. .+.++..|+..++||+|+||.++|..|++.++++++
T Consensus 278 tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 278 TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp ESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876643 678899999999999999999999999999999998
Q ss_pred Hh
Q 001150 1127 EK 1128 (1138)
Q Consensus 1127 e~ 1128 (1138)
..
T Consensus 358 ~~ 359 (444)
T 2zan_A 358 SA 359 (444)
T ss_dssp HC
T ss_pred hh
Confidence 65
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.1e-29 Score=283.49 Aligned_cols=230 Identities=41% Similarity=0.730 Sum_probs=203.2
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+.++|+|++|++.+++.|++.+..++.+++.|...+. .++.++||+||||||||+||+++|++++.+|+.++++++.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4689999999999999999999999999998876554 455899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
++|..+..++.+|..++...|+||||||||.+...+... .......+++++|+..++++.. ..+++||+|||.++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 999999999999999999999999999999987543211 0111234567788888887653 367999999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+++++++ ||+..++++.|+.++|.+|++.++.+.++..++++..++..++||+|+||+++|+.|++.++++.+..
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999999999999999999998887788999999999999999999999999999999988754
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=276.39 Aligned_cols=229 Identities=40% Similarity=0.672 Sum_probs=190.4
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+.++|+|++|++++++.|++.+.+++.+++.+...+...| .|+||+||||||||+|+++||.+++.+++.+++.++.+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~-~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC-SEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC-CeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 4689999999999999999999999999999987765444 789999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld 1055 (1138)
+.++.+..++.+|..++...|+|+|+||||.++..+... ......+++++++..|++... ...++++++||.|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCC
Confidence 889889999999999988899999999999987654321 122334677888999998754 36799999999999999
Q ss_pred HHHHh--cCCceEEecCCCHHHHHHHHHHHHhh---CCCCCcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAK---EDLSPDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1056 ~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k---~~l~~dvdl~~LA~~t--eGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
++++| ||+..|++++|+.++|.+||+.+++. ..+..++++..||..+ +||+|+||.++|++|++.++++.+..
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 99999999999999999999999864 2345788999999875 59999999999999999999886543
No 16
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.95 E-value=1.6e-27 Score=297.29 Aligned_cols=406 Identities=15% Similarity=0.194 Sum_probs=244.8
Q ss_pred HHHHHHHHhhcccCCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchh
Q 001150 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQT 722 (1138)
Q Consensus 643 i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~ 722 (1138)
+..+|+.+.. .+|.||||| +..+..+.|++.|+ +|.|.|||+||..++.+
T Consensus 256 l~~~~~~~~~---~~~~iLfiD-------~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~------------------ 305 (758)
T 3pxi_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRK------------------ 305 (758)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHH------------------
T ss_pred HHHHHHHHHh---cCCEEEEEc-------CchhHHHHHHHHHh--cCCEEEEeCCChHHHHH------------------
Confidence 5666666666 789999999 66778888888885 68999999999887411
Q ss_pred hhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCC
Q 001150 723 ALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLE 802 (1138)
Q Consensus 723 ~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~gls 802 (1138)
..+++.+|.+|| +.|.|++|+.+++..||+..+.+ +...+++.....++..
T Consensus 306 --------------------~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~----~~~~~~~~i~~~al~~---- 356 (758)
T 3pxi_A 306 --------------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDR----YEAHHRVSITDDAIEA---- 356 (758)
T ss_dssp --------------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTT----SGGGSSCSCCHHHHHH----
T ss_pred --------------------HhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH----HHHhcCCCCCHHHHHH----
Confidence 122477889999 88999999999999999977654 3334444444444331
Q ss_pred cccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCccc-------------ccccchhhhhhHhHHHH---HHHhh
Q 001150 803 CEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDAR-------------LVLSCESIQYGIGIFQA---IQNES 866 (1138)
Q Consensus 803 gaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~k-------------l~l~~edl~~al~~lq~---i~~~~ 866 (1138)
...+...++.+..++.+.++.+-..+....+.....|..-.. ..+...+++.+...... +....
T Consensus 357 ~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 436 (758)
T 3pxi_A 357 AVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQV 436 (758)
T ss_dssp HHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 233444455555566666655544433333332222210000 00011111111111111 00000
Q ss_pred Hh-------hhhcccccCCHHHHHHHHhcCcCCCCCCCc--------------ccccccchHHHHHHHHHHHhcccCchh
Q 001150 867 KS-------LKKSLKDVVTENEFEKRLLADVIPPSDIGV--------------TFDDIGALENVKDTLKELVMLPLQRPE 925 (1138)
Q Consensus 867 k~-------~~~s~k~~v~~~e~e~~ll~~ii~~~~~~v--------------sfdDI~Gle~vk~~L~e~V~~pl~~~e 925 (1138)
.. ........++.+++.. .+..+...+.... -..+++|.+..++.+.+.+......
T Consensus 437 ~~~~~~~~~~~~~~~~~v~~~~i~~-~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~-- 513 (758)
T 3pxi_A 437 EDTKKSWKEKQGQENSEVTVDDIAM-VVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAG-- 513 (758)
T ss_dssp HHHHSGGGHHHHCC---CCTHHHHH-HHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHhhcccCcccCHHHHHH-HHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcc--
Confidence 00 0112233455666655 3444443322111 1245778888888888777532110
Q ss_pred hhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEc
Q 001150 926 LFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 926 ~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfID 1002 (1138)
.....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+... ...++..+++.+++|||||
T Consensus 514 ---~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lD 586 (758)
T 3pxi_A 514 ---LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLD 586 (758)
T ss_dssp ---CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEE
T ss_pred ---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEe
Confidence 11224555679999999999999999999998 7899999999988766554 3344555666778999999
Q ss_pred CCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc-------cCCCCEEEEEecCCCCC------------CcHHHHhcCC
Q 001150 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDTERILVLAATNRPFD------------LDEAVIRRLP 1063 (1138)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~-------~~~~~VLVIaTTN~p~~------------Ld~aLlrRFd 1063 (1138)
|||.+- ..+++.|+..++.... ....+++||+|||.+.. +.++|++||+
T Consensus 587 Ei~~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~ 654 (758)
T 3pxi_A 587 AIEKAH------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRID 654 (758)
T ss_dssp CGGGSC------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS
T ss_pred CccccC------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC
Confidence 999772 3455566666654321 12357899999997544 7899999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHHhh
Q 001150 1064 RRLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1138)
Q Consensus 1064 ~~I~v~lPd~eeR~eIL~~ll~k~-------~l~---~dvdl~~LA~~--teGySgaDL~~L~~~Aa~~ai~eiie~e 1129 (1138)
.+|.|+.|+.+++.+|++.++... +.. .+..++.|+.. ...+..++|+++++.+...++.+.+-..
T Consensus 655 ~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~ 732 (758)
T 3pxi_A 655 EIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRG 732 (758)
T ss_dssp EEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTT
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999887652 222 22235556553 2356778999999999988887766443
No 17
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=4.3e-27 Score=293.12 Aligned_cols=394 Identities=16% Similarity=0.213 Sum_probs=242.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhc------CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 715 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~------~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~ 715 (1138)
.+..+++.+.. .++.||||||+|.+++ +..++.+.|+..|+ .+++.+||++|.+++.+
T Consensus 266 ~l~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~----------- 329 (758)
T 1r6b_X 266 RFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSN----------- 329 (758)
T ss_dssp HHHHHHHHHSS---SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHC-----------
T ss_pred HHHHHHHHHHh---cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhh-----------
Confidence 45556655554 6899999999999875 24455666666664 58999999999775210
Q ss_pred ccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHh
Q 001150 716 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 795 (1138)
Q Consensus 716 r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~v 795 (1138)
.|. .|.+|.+||. .+.|.+|+.++|.+||+..+..+. ..+++.....+
T Consensus 330 ----------------~~~-----------~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~----~~~~v~~~~~a 377 (758)
T 1r6b_X 330 ----------------IFE-----------KDRALARRFQ-KIDITEPSIEETVQIINGLKPKYE----AHHDVRYTAKA 377 (758)
T ss_dssp ----------------CCC-----------CTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHH----HHHTCCCCHHH
T ss_pred ----------------hhh-----------cCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHH----HhcCCCCCHHH
Confidence 011 3567888994 899999999999999997765422 12233222222
Q ss_pred hhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhhhHhHHHHHHHhhHhhhhcccc
Q 001150 796 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKD 875 (1138)
Q Consensus 796 L~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~al~~lq~i~~~~k~~~~s~k~ 875 (1138)
+.. ...+..-++.+..++.+.++.+- .|..+.... +.......++.+++..++..+..+ + ..
T Consensus 378 l~~----~~~~s~~~i~~~~lp~~~i~lld-~a~~~~~~~---~~~~~~~~v~~~di~~~~~~~~~i-p---------~~ 439 (758)
T 1r6b_X 378 VRA----AVELAVKYINDRHLPDKAIDVID-EAGARARLM---PVSKRKKTVNVADIESVVARIARI-P---------EK 439 (758)
T ss_dssp HHH----HHHHHHHHCTTSCTTHHHHHHHH-HHHHHHHHS---SSCCCCCSCCHHHHHHHHHHHSCC-C---------CC
T ss_pred HHH----HHHHhhhhcccccCchHHHHHHH-HHHHHHhcc---cccccCCccCHHHHHHHHHHhcCC-C---------cc
Confidence 211 11222333334444444444332 222222111 111122334444444433321100 0 00
Q ss_pred cCCHHHHHH--HHhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHH
Q 001150 876 VVTENEFEK--RLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 876 ~v~~~e~e~--~ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LA 953 (1138)
.+..++... .+... -..++.|++.+++.+...+..... .-....+|..++||+||||||||++|
T Consensus 440 ~~~~~~~~~l~~l~~~---------l~~~v~g~~~~~~~l~~~i~~~~~-----g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 440 SVSQSDRDTLKNLGDR---------LKMLVFGQDKAIEALTEAIKMARA-----GLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CSSSSHHHHHHHHHHH---------HTTTSCSCHHHHHHHHHHHHHHHT-----TCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred ccchhHHHHHHHHHHH---------HHhhccCHHHHHHHHHHHHHHHhc-----ccCCCCCCceEEEEECCCCCcHHHHH
Confidence 011111110 00000 012466777777777766542110 00122456668999999999999999
Q ss_pred HHHHHHhCCceEEEecccccc-----ccccchHHHH-----HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHH
Q 001150 954 KAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM 1023 (1138)
Q Consensus 954 rALA~elg~~fi~Id~seL~s-----~~iG~~E~~I-----~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~i 1023 (1138)
+++|+.++.+|+.++|+++.. ..+|.+.+++ ..++..+++.+++||||||||.+- ..+
T Consensus 506 ~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~------------~~~ 573 (758)
T 1r6b_X 506 VQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDV 573 (758)
T ss_dssp HHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC------------HHH
T ss_pred HHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC------------HHH
Confidence 999999999999999998743 3445444443 235566667778999999999762 346
Q ss_pred HHHHHHHhcCCCcc-------CCCCEEEEEecCCCC-------------------------CCcHHHHhcCCceEEecCC
Q 001150 1024 KNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------------DLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1024 l~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p~-------------------------~Ld~aLlrRFd~~I~v~lP 1071 (1138)
++.|++.++..... +..+++||+|||... .+.++|++||+.+|.|+.|
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l 653 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL 653 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCC
T ss_pred HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCC
Confidence 66677777643221 125689999999743 6789999999999999999
Q ss_pred CHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1072 DAPNRAKILQVILAKE-------DLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1072 d~eeR~eIL~~ll~k~-------~l~---~dvdl~~LA~~t--eGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
+.+++..|++.++.+. ++. .+..++.|+... ..+..++|+++++.++..++.+.+-
T Consensus 654 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 654 STDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988632 111 233356676644 2566899999999999887666543
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=4.9e-27 Score=277.91 Aligned_cols=225 Identities=40% Similarity=0.636 Sum_probs=195.2
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
...++|+|++|++++++.|++.+.. +..+..|.+.+. ++++++||+||||||||+||+++|.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 5678999999999999999998875 566777766554 34478999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.+.|..+..++.+|..|+...|+||||||||.+...+... +.......+++.|+..++++.. ..+++||+|||.++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999999999999999999999999999999997665421 2223445678888888887654 36799999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
.++++++| ||+..+.|+.|+.++|.+|++.++++..+..++++..++..+.||+|+||.++|+.|+..+.+
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR 238 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999999988888888999999999999999999999999988764
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=8.8e-27 Score=255.71 Aligned_cols=226 Identities=42% Similarity=0.738 Sum_probs=198.8
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+.++|++++|++.+++.|.+.+..++..++.+...+. .++.++||+||||||||++|+++|+.++.+++.+++.++...
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 3578999999999999999999988888888877654 345789999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
+.|..+..+..+|..++...|+||||||||.+.+.+... .........+..++..+++... ..+++||+|||.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDI 168 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGG
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchh
Confidence 999999999999999999999999999999998765432 1223345556667777776543 357999999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
+++++++ ||+.++.++.|+.++|.+|++.++....+..+.++..++..+.||++++|+.+|..|+..|+.+
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999999998888888889999999999999999999999999888764
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.9e-27 Score=267.76 Aligned_cols=227 Identities=47% Similarity=0.832 Sum_probs=196.9
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
..++|++++|++.+++.|++.+..++..++.|... ..++.++||+||||||||+||+++|++++.+|+.++++++...
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 46789999999999999999999888887776543 3566899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld 1055 (1138)
+.|..+..++.+|..++...|+||||||||.|...+.. .......+++++|+..+++.......+++||+|||.++.++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999876532 23445678888999999987655567899999999999999
Q ss_pred HHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1056 ~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+++++||+..+.++.|+.++|.+|++.++...++. .+.++..|+..++||+++||..||..|+..+++++
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876544 46678999999999999999999999999999864
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.1e-26 Score=252.23 Aligned_cols=226 Identities=42% Similarity=0.635 Sum_probs=192.1
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+..+|++++|++.+++.|.+.+.. +..++.+...+. .++.++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 4467899999999999999988764 555665554443 34478999999999999999999999999999999999998
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.+.|..+..++.+|..+....|+||||||||.+...+... ........+++.++..+++... ..+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 8999999999999999999899999999999997655321 1223345677788888887653 46799999999999
Q ss_pred CCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
.+++++++ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||+++||.++|..|+..+..+
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999998 9999999999999999999999998888888888999999999999999999999999988753
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=1.3e-26 Score=256.12 Aligned_cols=236 Identities=50% Similarity=0.839 Sum_probs=197.4
Q ss_pred HhcCcCCCCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceE
Q 001150 886 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1138)
Q Consensus 886 ll~~ii~~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi 965 (1138)
+...++. ..+.++|++++|++.+++.|.+.+..++.+++.|... ..++.++||+||||||||++|+++|++++.+|+
T Consensus 7 ~~~~~~~-~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 7 ILDEIVE-GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp HHTTTBC-CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHhcc-CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 3444443 3457899999999999999999998888877776533 345689999999999999999999999999999
Q ss_pred EEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-CCCCEEE
Q 001150 966 NISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DTERILV 1044 (1138)
Q Consensus 966 ~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-~~~~VLV 1044 (1138)
.++++++.+.+.+..+..++.+|..+....|+||||||||.+...+... .......+.+.|+..+++.... ...+++|
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 9999999999999999999999999999999999999999998765321 1223456677788888776543 2357999
Q ss_pred EEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1045 LAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1045 IaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
|++||.++.+++++++||+..+.++.|+.++|..|++.++.+.+.. .+.++..|+..+.||++++|.++|+.|+..+++
T Consensus 163 i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876643 456789999999999999999999999999988
Q ss_pred HH
Q 001150 1124 EI 1125 (1138)
Q Consensus 1124 ei 1125 (1138)
+.
T Consensus 243 ~~ 244 (297)
T 3b9p_A 243 EL 244 (297)
T ss_dssp TC
T ss_pred HH
Confidence 75
No 23
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-27 Score=272.96 Aligned_cols=233 Identities=15% Similarity=0.242 Sum_probs=187.8
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
-+|||++...+ |+.|..|.+++..+|+||+++ +++ .+.+++|||+|||| +++++||||+|++++++|+.++.
T Consensus 143 p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPG--TGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGL--TKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPG--TGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSS--SSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCC--CCHHHHHHHHHHhhCCCceEEEh
Confidence 36899999999 999999999999999999985 333 45578999999999 99999999999999999999886
Q ss_pred ccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 001150 468 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 547 (1138)
Q Consensus 468 ~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 547 (1138)
+.|.
T Consensus 216 s~l~---------------------------------------------------------------------------- 219 (405)
T 4b4t_J 216 AELV---------------------------------------------------------------------------- 219 (405)
T ss_dssp GGGS----------------------------------------------------------------------------
T ss_pred HHhh----------------------------------------------------------------------------
Confidence 4332
Q ss_pred ccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccc
Q 001150 548 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 627 (1138)
Q Consensus 548 ~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 627 (1138)
T Consensus 220 -------------------------------------------------------------------------------- 219 (405)
T 4b4t_J 220 -------------------------------------------------------------------------------- 219 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--------ch---hhHHHHHHhcC--CCcEEEE
Q 001150 628 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DS---YSTFKSRLEKL--PDKVIVI 694 (1138)
Q Consensus 628 ~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--------~~---~~~lk~~L~~l--~g~VvvI 694 (1138)
++|+|| .+..|+.+|+.+.. ..|+||||||||.++..+. +. .+.|-..|+.+ ..+|+||
T Consensus 220 ---sk~vGe--se~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 220 ---QKYIGE--GSRMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp ---CSSTTH--HHHHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred ---ccccch--HHHHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 346666 77789999999999 9999999999999875221 11 12222233322 4589999
Q ss_pred eecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 001150 695 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1138)
Q Consensus 695 Gstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~ 774 (1138)
||||+++..||| |+|||| |+.+|+|++|+.++|.+||+.
T Consensus 292 aATNrpd~LDpA-------llRpGR----------------------------------fD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 292 MATNRLDILDPA-------LLRPGR----------------------------------IDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp EEESCSSSSCHH-------HHSTTS----------------------------------SCCEEECCCCCHHHHHHHHHH
T ss_pred eccCChhhCCHh-------HcCCCc----------------------------------CceEEEcCCcCHHHHHHHHHH
Confidence 999999999999 889999 889999999999999999998
Q ss_pred hhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhhh
Q 001150 775 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQY 854 (1138)
Q Consensus 775 ~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~~ 854 (1138)
++.+ +....+++....+-.+.||+|+||..+|.++.+.+ +. .....|+.++|+.
T Consensus 331 ~~~~----~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A---------------ir-------~~~~~vt~~Df~~ 384 (405)
T 4b4t_J 331 HSRK----MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA---------------LR-------ERRIHVTQEDFEL 384 (405)
T ss_dssp HHTT----SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH---------------HH-------TTCSBCCHHHHHH
T ss_pred HhcC----CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH---------------HH-------cCCCCcCHHHHHH
Confidence 8755 44556777777888899999999999998765421 11 1345688899998
Q ss_pred hHhHH
Q 001150 855 GIGIF 859 (1138)
Q Consensus 855 al~~l 859 (1138)
|+..+
T Consensus 385 Al~~v 389 (405)
T 4b4t_J 385 AVGKV 389 (405)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 24
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.94 E-value=6.8e-26 Score=286.10 Aligned_cols=419 Identities=16% Similarity=0.238 Sum_probs=244.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhc-----CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r 716 (1138)
.+..+++.+.. ..+|+||||||+|.+.+ +..++.+.|++.|+. +++.+||++|.+++..
T Consensus 250 ~l~~~~~~~~~--~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~------------ 313 (854)
T 1qvr_A 250 RLKAVIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYRE------------ 313 (854)
T ss_dssp HHHHHHHHHHT--TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHH------------
T ss_pred HHHHHHHHHHh--cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhh------------
Confidence 45555555554 14799999999999874 447888899999965 8999999999875311
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhh
Q 001150 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 796 (1138)
Q Consensus 717 ~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL 796 (1138)
...+.+|.+||. .|.|++|+.+++..||+..+.+ +...+++.....++
T Consensus 314 ---------------------------~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~----~~~~~~~~i~~~al 361 (854)
T 1qvr_A 314 ---------------------------IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEK----YEVHHGVRISDSAI 361 (854)
T ss_dssp ---------------------------HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHH----HHHHTTCEECHHHH
T ss_pred ---------------------------hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhh----hhhhcCCCCCHHHH
Confidence 113556778895 6999999999999999877654 22344554444444
Q ss_pred hcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCC--c----------ccccccch----------hh--
Q 001150 797 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--D----------ARLVLSCE----------SI-- 852 (1138)
Q Consensus 797 ~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~--~----------~kl~l~~e----------dl-- 852 (1138)
.. ...+..-++.+..++.+.++.+...+....+.....|.. . ....+..+ .+
T Consensus 362 ~~----~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (854)
T 1qvr_A 362 IA----AATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEA 437 (854)
T ss_dssp HH----HHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHH
T ss_pred HH----HHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 31 133444444555556555554443333333221111100 0 00000000 00
Q ss_pred -----hhhHhHH-----------HHH---HHh----------------------------------hHhhh------hcc
Q 001150 853 -----QYGIGIF-----------QAI---QNE----------------------------------SKSLK------KSL 873 (1138)
Q Consensus 853 -----~~al~~l-----------q~i---~~~----------------------------------~k~~~------~s~ 873 (1138)
...+..+ +.+ ... ..... .-+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (854)
T 1qvr_A 438 EIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFV 517 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccc
Confidence 0000000 000 000 00000 001
Q ss_pred cccCCHHHHHHHHhcCcCCCCCCC--------------cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceE
Q 001150 874 KDVVTENEFEKRLLADVIPPSDIG--------------VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 939 (1138)
Q Consensus 874 k~~v~~~e~e~~ll~~ii~~~~~~--------------vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gI 939 (1138)
...++.+++.. .+..+...+... .-+.+++|.+..++.+...+..... .-....+|..++
T Consensus 518 ~~~v~~~~l~~-~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~-----g~~~~~~p~~~v 591 (854)
T 1qvr_A 518 RLEVTEEDIAE-IVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARA-----GLKDPNRPIGSF 591 (854)
T ss_dssp CSEECHHHHHH-HHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGG-----GCSCSSSCSEEE
T ss_pred cCCcCHHHHHH-HHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhc-----ccCCCCCCceEE
Confidence 23345555554 334443321100 1134678888888888777753110 001224566789
Q ss_pred EEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc-----ccccchHHHH-----HHHHHHHhccCCeEEEEcCCcc
Q 001150 940 LLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 940 LL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s-----~~iG~~E~~I-----~~lF~~A~k~~PsIIfIDEID~ 1006 (1138)
||+||||||||++|++||+.+ +.+|+.++|+++.. ..+|....++ +.++...+..+++||||||||.
T Consensus 592 Ll~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~ 671 (854)
T 1qvr_A 592 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEK 671 (854)
T ss_dssp EEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGG
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccc
Confidence 999999999999999999999 88999999987643 3344333332 3455555666789999999997
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcCCCcc-------CCCCEEEEEecCC--------------------------CCC
Q 001150 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNR--------------------------PFD 1053 (1138)
Q Consensus 1007 L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-------~~~~VLVIaTTN~--------------------------p~~ 1053 (1138)
+- ..+++.|++.++..... +-.+++||+|||. ...
T Consensus 672 l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~ 739 (854)
T 1qvr_A 672 AH------------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQH 739 (854)
T ss_dssp SC------------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cC------------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 62 45677778877754322 1257889999997 235
Q ss_pred CcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1054 Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~-------~l~---~dvdl~~LA~~te--GySgaDL~~L~~~Aa~~a 1121 (1138)
+.++|++||+.++.|.+|+.+++..|++.++... ++. .+..+..|+.... .++.++|+++++.++..+
T Consensus 740 f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp SCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred CCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999888631 111 2334666777655 578899999999999988
Q ss_pred HHHHHHhhh
Q 001150 1122 IKEILEKEK 1130 (1138)
Q Consensus 1122 i~eiie~ek 1130 (1138)
+.+.+-...
T Consensus 820 ~~~~i~~~~ 828 (854)
T 1qvr_A 820 LAQKILAGE 828 (854)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhCc
Confidence 887765543
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=268.26 Aligned_cols=228 Identities=50% Similarity=0.860 Sum_probs=188.1
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
...++|++++|++.+++.|.+.+..++.+++.|... ..+.+++||+||||||||+||++||++++.+|+.+++.++.+
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 346789999999999999999998888777766543 345689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCC
Q 001150 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L 1054 (1138)
.+.|..+..+..+|..++...|+||||||||.|+..+.. ........+++.|+..+++.......+++||+|||.++.|
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 999999999999999999999999999999999766532 2334567788888888888766556789999999999999
Q ss_pred cHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1055 d~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
++++++||+.++.|+.|+.++|.+||+.++...+.. .+.++..|+..++||++++|..||..|+..+++++
T Consensus 266 ~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 266 DEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred CHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999899999999999999999999876554 45678999999999999999999999999998874
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=248.85 Aligned_cols=224 Identities=36% Similarity=0.583 Sum_probs=175.0
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~ 976 (1138)
.++|++++|++.+++.|++++.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 57899999999999999998765 555666655443 3457899999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcc---hHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 977 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 977 iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~---~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
.+..+..+..+|..+....|+||||||||.+...+.... ........++.++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888999999999998999999999999976543211 112234556777777777543 368999999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCccc--HHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD--FDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvd--l~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
+++++++ ||+..++++.|+.++|.+|++.++...++..+.+ ...++..+.||++++|.++|+.|+..++++
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999 9999999999999999999999999877664433 478999999999999999999999888754
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=1.7e-26 Score=274.62 Aligned_cols=227 Identities=42% Similarity=0.690 Sum_probs=205.0
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~ 976 (1138)
.++|++++|++..++.|.+.+..++.+++.|...+. .++.++||+||||||||++|+++|++++.+|+.++++++.+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 357899999999999999999999999998887654 4457999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcH
Q 001150 977 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1056 (1138)
Q Consensus 977 iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~ 1056 (1138)
+|+.+..++.+|..|....|+||||||||.|.+.+... .......+++.|+..|++... ..+++||+|||.++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998776432 235567788889888887643 468999999999999999
Q ss_pred HHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001150 1057 AVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1057 aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eiie 1127 (1138)
++++ ||+..+.++.|+.++|.+||+.++....+..+.++..++..+.||+++||.+||..|++.++++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccc
Confidence 9999 9999999999999999999999999888888889999999999999999999999999999987643
No 28
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.6e-27 Score=270.17 Aligned_cols=235 Identities=16% Similarity=0.209 Sum_probs=188.7
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
+.-+|||+++..+ |+.|..|.+++..+|+|+++++ .--.+.+++|||+|||| +++++||||||++++++|+.++
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~f~--~~Gi~~prGvLLyGPPG--TGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPELYE--EMGIKPPKGVILYGAPG--TGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHHHH--HHTCCCCSEEEEESSTT--TTHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCCCceECCCC--chHHHHHHHHHHHhCCCEEEEE
Confidence 4567999999999 9999999999999999999853 22345679999999999 9999999999999999999988
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 001150 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1138)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1138)
.+.|.
T Consensus 249 ~s~l~--------------------------------------------------------------------------- 253 (437)
T 4b4t_I 249 GSELI--------------------------------------------------------------------------- 253 (437)
T ss_dssp SGGGC---------------------------------------------------------------------------
T ss_pred HHHhh---------------------------------------------------------------------------
Confidence 64333
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1138)
T Consensus 254 -------------------------------------------------------------------------------- 253 (437)
T 4b4t_I 254 -------------------------------------------------------------------------------- 253 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cchhhHHHHHH---hc--CCCcEEE
Q 001150 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRL---EK--LPDKVIV 693 (1138)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~~~~~lk~~L---~~--l~g~Vvv 693 (1138)
++|+++ .+..++.+|+.+.+ ..|+||||||||.++..+ .+....+...| +. ..++|+|
T Consensus 254 ----sk~vGe--sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 254 ----QKYLGD--GPRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp ----CSSSSH--HHHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred ----hccCch--HHHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEE
Confidence 345566 67789999999999 999999999999987622 12222333333 22 2468999
Q ss_pred EeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 001150 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1138)
Q Consensus 694 IGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk 773 (1138)
|||||+++..||| |+|||| |+.+|+|++|+.++|.+||+
T Consensus 325 IaATNrpd~LDpA-------LlRpGR----------------------------------fD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 325 IMATNKIETLDPA-------LIRPGR----------------------------------IDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp EEEESCSTTCCTT-------SSCTTT----------------------------------EEEEECCCCCCHHHHHHHHH
T ss_pred EEeCCChhhcCHH-------HhcCCc----------------------------------eeEEEEcCCcCHHHHHHHHH
Confidence 9999999999999 899999 77899999999999999999
Q ss_pred HhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhh
Q 001150 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQ 853 (1138)
Q Consensus 774 ~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~ 853 (1138)
.++.+ +....+++....+-.+.||+|+||..+|.++.+.+ +. .....|+.++|.
T Consensus 364 ~~l~~----~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~A---------------ir-------~~~~~It~eDf~ 417 (437)
T 4b4t_I 364 IHTSK----MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLA---------------LR-------ERRMQVTAEDFK 417 (437)
T ss_dssp HHHTT----SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHH---------------HH-------TTCSCBCHHHHH
T ss_pred HHhcC----CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHH---------------HH-------cCCCccCHHHHH
Confidence 98855 44556777777888899999999999998765421 11 124458888988
Q ss_pred hhHhH
Q 001150 854 YGIGI 858 (1138)
Q Consensus 854 ~al~~ 858 (1138)
.|+..
T Consensus 418 ~Al~r 422 (437)
T 4b4t_I 418 QAKER 422 (437)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87763
No 29
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.8e-26 Score=266.92 Aligned_cols=215 Identities=15% Similarity=0.239 Sum_probs=176.4
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 001150 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1138)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1138)
-+.-+|||+++..+ ++.|..|.+++..+|+|+++. .+--.+.+++|||+|||| +++++||||+|++++++|+.+
T Consensus 173 ~~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~f--~~~g~~~prGvLLyGPPG--TGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 173 DEKPTETYSDVGGL--DKQIEELVEAIVLPMKRADKF--KDMGIRAPKGALMYGPPG--TGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp ESSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHHH--HHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHHH--HhCCCCCCCeeEEECcCC--CCHHHHHHHHHHHhCCCEEEE
Confidence 35668899999999 999999999999999999985 222345679999999999 999999999999999999999
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 001150 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1138)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1138)
+.+.|.
T Consensus 247 ~~s~l~-------------------------------------------------------------------------- 252 (434)
T 4b4t_M 247 AAPQLV-------------------------------------------------------------------------- 252 (434)
T ss_dssp EGGGGC--------------------------------------------------------------------------
T ss_pred ehhhhh--------------------------------------------------------------------------
Confidence 874433
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 001150 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1138)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1138)
T Consensus 253 -------------------------------------------------------------------------------- 252 (434)
T 4b4t_M 253 -------------------------------------------------------------------------------- 252 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--------chhhH---HHHHHhcC--CCcEE
Q 001150 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYST---FKSRLEKL--PDKVI 692 (1138)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--------~~~~~---lk~~L~~l--~g~Vv 692 (1138)
++|+|+ ....++.+|+.+.. ..|+||||||||.++..+. +.... |...|+.. .++|+
T Consensus 253 -----~~~vGe--se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 253 -----QMYIGE--GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp -----SSCSSH--HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred -----hcccch--HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 235555 66789999999999 8999999999999886321 11122 22233332 35899
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 001150 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1138)
Q Consensus 693 vIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~IL 772 (1138)
|||+||+++..||| |.|||| |+.+|+|++|+.++|.+||
T Consensus 323 VIaaTNrp~~LD~A-------llRpGR----------------------------------fD~~I~i~lPd~~~R~~Il 361 (434)
T 4b4t_M 323 VLAATNRVDVLDPA-------LLRSGR----------------------------------LDRKIEFPLPSEDSRAQIL 361 (434)
T ss_dssp EEEECSSCCCCCTT-------TCSTTS----------------------------------EEEEEECCCCCHHHHHHHH
T ss_pred EEEeCCCchhcCHh-------HhcCCc----------------------------------eeEEEEeCCcCHHHHHHHH
Confidence 99999999999999 899999 8889999999999999999
Q ss_pred HHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 773 k~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
+.++.+ +....+++....+-.+.||+|+||..+|.++.+
T Consensus 362 ~~~~~~----~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 362 QIHSRK----MTTDDDINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp HHHHHH----SCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHhcC----CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 988855 455667777778888999999999999987654
No 30
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=8e-25 Score=237.04 Aligned_cols=227 Identities=38% Similarity=0.600 Sum_probs=189.2
Q ss_pred CCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc
Q 001150 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1138)
Q Consensus 894 ~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~ 973 (1138)
..+.++|++++|++.++..+++++.. +..+..+...+... +.+++|+||||||||+|++++|..++.+++.+++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~-~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARI-PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCC-CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCC-CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34578999999999999999987764 34455565544433 36799999999999999999999999999999998888
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
..+.+.....+..+|..+....|+++||||||.+...+... ........+++.++..+++... ...++++++||.|
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 77788878889999999988889999999999987554321 1223445677888888887643 3568999999999
Q ss_pred CCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
+.+|++++| ||+..+.++.|+.++|.+||+.++....+..++++..+|..+.||+++||+++|+.|+..++++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999998 8999999999999999999999988777778889999999999999999999999999988763
No 31
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-25 Score=263.00 Aligned_cols=234 Identities=16% Similarity=0.240 Sum_probs=186.3
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
.-+|||+++..+ |+.|..|.+++..+|+|++++ +++ ...+++|||+|||| +++++||||||++++++|+.++
T Consensus 175 ~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPG--tGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGGL--TEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPG--TGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 457899999998 999999999999999999985 333 46789999999999 9999999999999999999988
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 001150 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1138)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1138)
.+.|.
T Consensus 248 ~s~l~--------------------------------------------------------------------------- 252 (437)
T 4b4t_L 248 ASGIV--------------------------------------------------------------------------- 252 (437)
T ss_dssp GGGTC---------------------------------------------------------------------------
T ss_pred hhhhc---------------------------------------------------------------------------
Confidence 64333
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1138)
T Consensus 253 -------------------------------------------------------------------------------- 252 (437)
T 4b4t_L 253 -------------------------------------------------------------------------------- 252 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cchh---hHHHHHHhcC--CCcEEE
Q 001150 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSY---STFKSRLEKL--PDKVIV 693 (1138)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~~~---~~lk~~L~~l--~g~Vvv 693 (1138)
++|+++ ....++.+|+.+.. ..|+||||||||.++..+ .+.. +.|...|+.. .++|+|
T Consensus 253 ----sk~~Ge--se~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 253 ----DKYIGE--SARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp ----CSSSSH--HHHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred ----cccchH--HHHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE
Confidence 245555 67789999999999 999999999999987521 1111 2222333322 458999
Q ss_pred EeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 001150 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1138)
Q Consensus 694 IGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk 773 (1138)
|||||+++..||| |+|||| |+.+|+|++|+.++|.+||+
T Consensus 324 I~ATNrp~~LDpA-------llRpGR----------------------------------fD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 324 IMATNRPDTLDPA-------LLRPGR----------------------------------LDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp EEEESSTTSSCTT-------TTSTTS----------------------------------EEEEECCCCCCHHHHHHHHH
T ss_pred EEecCCchhhCHH-------HhCCCc----------------------------------cceeeecCCcCHHHHHHHHH
Confidence 9999999999999 899999 78899999999999999999
Q ss_pred HhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhh
Q 001150 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQ 853 (1138)
Q Consensus 774 ~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~ 853 (1138)
.++.+ +....+++....+-.+.||+|+||..+|.++.+.+ +.. ....|+.++|.
T Consensus 363 ~~~~~----~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~a---------------ir~-------~~~~i~~~d~~ 416 (437)
T 4b4t_L 363 IHTAK----VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA---------------IRD-------DRDHINPDDLM 416 (437)
T ss_dssp HHHHT----SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHH---------------HHT-------TCSSBCHHHHH
T ss_pred HHhcC----CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHH---------------HHc-------CCCCCCHHHHH
Confidence 98855 44456777777888899999999999998764421 111 23357888888
Q ss_pred hhHhHH
Q 001150 854 YGIGIF 859 (1138)
Q Consensus 854 ~al~~l 859 (1138)
.|+..+
T Consensus 417 ~Al~~v 422 (437)
T 4b4t_L 417 KAVRKV 422 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 32
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-25 Score=261.77 Aligned_cols=234 Identities=13% Similarity=0.163 Sum_probs=185.9
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
.=+|||+++..+ |+.|..|.+++..+|+++++. +++ ...+++|||+|||| +++++||||||++++++|+.++
T Consensus 203 ~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPG--TGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 203 KPDVTYSDVGGC--KDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPG--TGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCC--CcHHHHHHHHHhccCCCeEEEE
Confidence 346999999999 999999999999999999985 333 35789999999999 9999999999999999999988
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 001150 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1138)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1138)
.+.|.
T Consensus 276 ~s~L~--------------------------------------------------------------------------- 280 (467)
T 4b4t_H 276 GSELV--------------------------------------------------------------------------- 280 (467)
T ss_dssp GGGGC---------------------------------------------------------------------------
T ss_pred hHHhh---------------------------------------------------------------------------
Confidence 64433
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1138)
T Consensus 281 -------------------------------------------------------------------------------- 280 (467)
T 4b4t_H 281 -------------------------------------------------------------------------------- 280 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc----ch-------hhHHHHHHhc--CCCcEEE
Q 001150 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS----DS-------YSTFKSRLEK--LPDKVIV 693 (1138)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~----~~-------~~~lk~~L~~--l~g~Vvv 693 (1138)
++|+|+ .+..++.+|+.+.. ..|+||||||||.++..+. .. .+.+...|+. ..++|+|
T Consensus 281 ----sk~vGe--sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 281 ----QKYVGE--GARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp ----CCSSSH--HHHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred ----cccCCH--HHHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 235555 67789999999999 9999999999999875221 11 1112222222 2568999
Q ss_pred EeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 001150 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1138)
Q Consensus 694 IGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk 773 (1138)
||+||+++..|+| |+|||| |+++|+|++|+.++|.+||+
T Consensus 352 IaATNrpd~LDpA-------LlRpGR----------------------------------FD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 352 MFATNRPNTLDPA-------LLRPGR----------------------------------IDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp EEECSCTTSBCHH-------HHSTTT----------------------------------CCEEECCCCCCHHHHHHHHH
T ss_pred EeCCCCcccCChh-------hhcccc----------------------------------ccEEEEeCCcCHHHHHHHHH
Confidence 9999999999999 889999 88999999999999999999
Q ss_pred HhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcccccccchhhh
Q 001150 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQ 853 (1138)
Q Consensus 774 ~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~kl~l~~edl~ 853 (1138)
.++.. +....+++....+-.+.||+|+||..+|.++.+.+ + .. ....++.++|.
T Consensus 391 ~~l~~----~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~A-----------i----r~-------~~~~it~~Df~ 444 (467)
T 4b4t_H 391 IHSKS----MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFA-----------I----RA-------RRKVATEKDFL 444 (467)
T ss_dssp HHHTT----SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH-----------H----HH-------TCSSBCHHHHH
T ss_pred HHhcC----CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH-----------H----Hc-------CCCccCHHHHH
Confidence 88854 45556777777788899999999999998765421 1 11 23457888888
Q ss_pred hhHhHH
Q 001150 854 YGIGIF 859 (1138)
Q Consensus 854 ~al~~l 859 (1138)
.|+..+
T Consensus 445 ~Al~kV 450 (467)
T 4b4t_H 445 KAVDKV 450 (467)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777633
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=3.8e-25 Score=263.18 Aligned_cols=224 Identities=38% Similarity=0.606 Sum_probs=193.7
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+.++|+|++|+++++..+++++.. +..+..|...+. +.++++||+||||||||+||++||.+++.+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 578999999999999999998864 455666655544 344789999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
+.+..+..++.+|..++...|+||||||||.+...+... ........+++.++..+++... ...+++|++||.|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 889888889999999988889999999999987655321 1234445678889999988753 367899999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
||++++| ||+..+.|+.|+.++|.+||+.++....+..++++..||..+.||+|+||+++|++|+..+.+
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999998 999999999999999999999998877778889999999999999999999999999987753
No 34
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=1.5e-26 Score=251.87 Aligned_cols=227 Identities=38% Similarity=0.579 Sum_probs=186.3
Q ss_pred CCCCCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 893 ~~~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
...+..+|++++|++.+++.|.+.+.. +..++.|...+. +++.++||+||||||||++|+++|++++.+|+.+++.++
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 345568899999999999999998764 666777665443 344789999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchH---HHHHHHHHHHHHHhcCCCccCCCCEEEEEecC
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH---EAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~---~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN 1049 (1138)
...+.|..+..++.+|..+....|+||||||||.+...+...... .....+++.|+..+++.... ..+++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn 159 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATN 159 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBS
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecC
Confidence 888888888788889999998899999999999997554211100 01112445666677765432 45699999999
Q ss_pred CCCCCcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001150 1050 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1050 ~p~~Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai 1122 (1138)
.++.+++++++ ||+..+.|+.|+.++|.++|+.++....+..+.++..|+..+.||+|+||+++|+.|+..+.
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 234 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTS
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999988777778889999999999999999999999998875
No 35
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=1.7e-23 Score=230.20 Aligned_cols=225 Identities=39% Similarity=0.621 Sum_probs=187.3
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
+.++|++++|++++++.+++++.. +..+..+......-+ .+++|+||||||||+|+++||..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCC-CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCC-CeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 578999999999999999987764 344555555444333 679999999999999999999999999999999888777
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc--chHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCC
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 1053 (1138)
+.+.....+..+|..+....|+++|+||||.+...+... .........++.++..+++... ...++++++||.|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777888999999988889999999999886544321 1123345667788888887643 356899999999999
Q ss_pred CcHHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
+|+++++ ||+..+.|+.|+.++|.+||+.++....+..++++..++..++||+++||+++|+.|+..+.++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999998 9999999999999999999999988777778889999999999999999999999999887753
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-24 Score=253.63 Aligned_cols=213 Identities=13% Similarity=0.192 Sum_probs=173.9
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 001150 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1138)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1138)
+.-+|||++...+ |+.|..|.+++..+|+++++. .++ .+.+++|||+|||| +++++||||+|++++++|+.+
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPG--tGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPG--TGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCCeEEE
Confidence 4457999999999 999999999999999999985 333 35678999999999 999999999999999999998
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 001150 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1138)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1138)
+.+.+.
T Consensus 238 ~~~~l~-------------------------------------------------------------------------- 243 (428)
T 4b4t_K 238 NGSEFV-------------------------------------------------------------------------- 243 (428)
T ss_dssp EGGGTC--------------------------------------------------------------------------
T ss_pred ecchhh--------------------------------------------------------------------------
Confidence 864333
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 001150 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1138)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1138)
T Consensus 244 -------------------------------------------------------------------------------- 243 (428)
T 4b4t_K 244 -------------------------------------------------------------------------------- 243 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC-------cc----hhhHHHHHHhcC--CCcEE
Q 001150 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-------SD----SYSTFKSRLEKL--PDKVI 692 (1138)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~-------~~----~~~~lk~~L~~l--~g~Vv 692 (1138)
++|+|+ ....|+.+|+.+.. ..|+||||||+|.++..+ .. ..+.|...|+.+ ..+|+
T Consensus 244 -----~~~~Ge--~e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 244 -----HKYLGE--GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp -----CSSCSH--HHHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred -----ccccch--hHHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 234555 66789999999998 999999999999988622 11 222333333332 45899
Q ss_pred EEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEe-CCCHHHHHHH
Q 001150 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH-MPQDEALLAS 771 (1138)
Q Consensus 693 vIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~-lPd~E~rl~I 771 (1138)
|||+||+++..||| |+|||| |+.+|+|+ +|+.++|..|
T Consensus 314 vI~aTN~~~~LD~A-------llRpGR----------------------------------fd~~I~~p~lPd~~~R~~I 352 (428)
T 4b4t_K 314 VIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPSLRDRRERRLI 352 (428)
T ss_dssp EEEEESCSSSCCHH-------HHSSSS----------------------------------EEEEEECCSSCCHHHHHHH
T ss_pred EEEecCChhhcChh-------hhcCCc----------------------------------ceEEEEcCCCCCHHHHHHH
Confidence 99999999999999 889999 77899995 9999999999
Q ss_pred HHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 772 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 772 Lk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
|+.++.+ +....+++....+..+.||+|+||..+|.++.+
T Consensus 353 l~~~~~~----~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 353 FGTIASK----MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp HHHHHHS----SCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcC----CCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 9988855 345566777777888999999999999987644
No 37
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=2.7e-22 Score=251.62 Aligned_cols=227 Identities=41% Similarity=0.685 Sum_probs=204.1
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~ 975 (1138)
..++|++|+|++.+++.|++.+..++.+++.|..... .++.++||+||||||||+||++||.+++.+++.+++.++.+.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3689999999999999999999999999999877664 455899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc
Q 001150 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1138)
Q Consensus 976 ~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld 1055 (1138)
+.+..+..++.+|..+....|+||||||||.++..+... ......++...|+..+++.... ..+++|+|||.++.++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcC
Confidence 999999999999999999999999999999998765432 2345567788888889887643 6799999999999999
Q ss_pred HHHHh--cCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 001150 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1056 ~aLlr--RFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~eii 1126 (1138)
+++++ ||+..+.+..|+.++|.+|++.++.+..+..+.++..++..+.||+++++..+|..|+..++++..
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 99998 999999999999999999999999888888888999999999999999999999999998887643
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=9.4e-22 Score=219.06 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=133.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEcCCcccc
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A----~k~~PsIIfIDEID~L~ 1008 (1138)
.+++.++||+||||||||+||++||++++.+|+.++++++.+.+.|..+..++++|..| ++..|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 34558999999999999999999999999999999999999999999999999999999 57789999999999998
Q ss_pred cCCCCcch-HHHHHHHHHHHHHHhcCCC---------ccCCCCEEEEEecCCCCCCcHHHHh--cCCceEEecCCCHHHH
Q 001150 1009 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNR 1076 (1138)
Q Consensus 1009 ~~r~~~~~-~~al~~il~~LL~~Ldgl~---------~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~~I~v~lPd~eeR 1076 (1138)
+.+..... ......+.+.|+..+++.. .....+++||+|||.++.++++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 74432111 1123456677888877443 1134679999999999999999997 8987775 6899999
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHH
Q 001150 1077 AKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNL 1113 (1138)
Q Consensus 1077 ~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L 1113 (1138)
.+|++.++... +++...++..++||++++|..+
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 99999988754 4568999999999999988643
No 39
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.81 E-value=5.5e-20 Score=186.13 Aligned_cols=112 Identities=20% Similarity=0.310 Sum_probs=98.3
Q ss_pred cccCCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCC---------CccceEEEEEEecC-CceEEEEEEeCCC
Q 001150 121 FETSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQA---------ISAVLCKIKHVQSE-GSAVAMVESIGSK 190 (1138)
Q Consensus 121 ~~~~~pWgrL~s~~~~~~~~~i~~~~~tvGr~~~cd~~l~~~~---------~s~~hcki~~~~~~-~~~~~~led~s~n 190 (1138)
..+..+||+|+++...++++.|.+..|+|||+..|||+|.+.. ||..||+|.+...+ +...+||+|+|+|
T Consensus 24 ~~~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StN 103 (149)
T 1gxc_A 24 EPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGN 103 (149)
T ss_dssp -----CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSS
T ss_pred CCCCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCC
Confidence 3455689999999999999999999999999999999999985 99999999987643 3346899999999
Q ss_pred ceEEcCeeccCCCeeEccCCCEEEEeecCCeeEEEEeecchh
Q 001150 191 GLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLNEV 232 (1138)
Q Consensus 191 Gt~VNg~~~gk~~~~~L~~gDeI~f~~~~~~ayif~~~~~~~ 232 (1138)
||||||++|+++..+.|++||+|.|+.+...+|+|+++..++
T Consensus 104 GT~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 104 GTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred CeEECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 999999999999999999999999999998999999987664
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=1e-18 Score=193.63 Aligned_cols=216 Identities=16% Similarity=0.194 Sum_probs=164.2
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcC--CCCCCCceEEEECCCCCCHHHHHHHHHHHh-------CCceEEEecccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKG--QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 972 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~--~~~rP~~gILL~GPPGTGKT~LArALA~el-------g~~fi~Id~seL 972 (1138)
+++|++.+++.|.+.+..... +..+.+. ...++..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999988875432 2222221 113445679999999999999999999998 348999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
.+.++|..+..+..+|..+ .++||||||+|.++..+... .....+++.|+..++.. ..++++|+++|...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~---~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER---DYGQEAIEILLQVMENN----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc---cccHHHHHHHHHHHhcC----CCCEEEEEeCChHH
Confidence 9999999988888888877 45899999999997554321 11234555666666543 35688889987653
Q ss_pred -----CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHH-------cCCCcHHHHHHHHHHHHH
Q 001150 1053 -----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANM-------TDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1053 -----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~-------teGySgaDL~~L~~~Aa~ 1119 (1138)
.+++++++||+.++.|+.|+.+++.+|++.++.+.++. .+..+..++.. ....+++++.++++.|+.
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887654 33345666665 223458999999999999
Q ss_pred HHHHHHHHh
Q 001150 1120 RPIKEILEK 1128 (1138)
Q Consensus 1120 ~ai~eiie~ 1128 (1138)
.+..+++..
T Consensus 261 ~~~~r~~~~ 269 (309)
T 3syl_A 261 RQANRLFTA 269 (309)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 888888763
No 41
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.76 E-value=2e-20 Score=220.54 Aligned_cols=202 Identities=21% Similarity=0.245 Sum_probs=138.8
Q ss_pred CCcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CceEEEeccccc
Q 001150 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSIT 973 (1138)
Q Consensus 896 ~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~seL~ 973 (1138)
+...|++++|++++++.+..++.. +..+ ..|++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~--~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL-------IKSK--KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred hhhchhhccCHHHHHHHHHHHHHH-------HHhC--CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 456789999999999998887753 1111 23557999999999999999999999998 999999999999
Q ss_pred cccccchHHHHHHHHHHH---hccCCeEEEEcCCcccccCCCCcchHH---HHH---------------HHHHHHHHHhc
Q 001150 974 SKWFGEGEKYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHE---AMR---------------KMKNEFMVNWD 1032 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A---~k~~PsIIfIDEID~L~~~r~~~~~~~---al~---------------~il~~LL~~Ld 1032 (1138)
+.+.|+.+. +.++|..| +...|+||||||||.+++.+....... ... ++.+.++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 99999999 788999999999999998765431111 111 11223444444
Q ss_pred CCCccCCCCEEEEEecCCCCCCcHHHHh--cCCc--eEEecCCC--HHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCc
Q 001150 1033 GLRTKDTERILVLAATNRPFDLDEAVIR--RLPR--RLMVNLPD--APNRAKILQVILAKEDLSPDVDFDAIANMTDGYS 1106 (1138)
Q Consensus 1033 gl~~~~~~~VLVIaTTN~p~~Ld~aLlr--RFd~--~I~v~lPd--~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGyS 1106 (1138)
......+..++|++|||.++.++++++| ||+. .+.++.|+ .++|.+|++.+.. .+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 2222234556777999999999999876 9988 66777774 4778777765442 268899999999
Q ss_pred HHHHHHHHHH
Q 001150 1107 GSDLKNLCVT 1116 (1138)
Q Consensus 1107 gaDL~~L~~~ 1116 (1138)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 42
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.75 E-value=1.2e-18 Score=168.90 Aligned_cols=105 Identities=25% Similarity=0.505 Sum_probs=93.1
Q ss_pred CcchhhcccCC--CCcceeeeCCeEEEcCCCCcceeecCC-CCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccC
Q 001150 125 TPWCRLLSQSG--QNSNVPICASIFTVGSSRQCNFPLKDQ-AISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKK 201 (1138)
Q Consensus 125 ~pWgrL~s~~~--~~~~~~i~~~~~tvGr~~~cd~~l~~~-~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk 201 (1138)
+|||+|+++.+ ..+.+.|....++|||+..|||.|.+. .||..||+|.....++. +||+|.|+|||||||++|.+
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~--~~l~D~S~NGt~vng~~l~~ 79 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQ--VTLEDTSTSGTVINKLKVVK 79 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCC--EEEEECSSSCCCCCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCe--EEEEECCcCCcEECCEEcCC
Confidence 69999999975 557899999999999999999999875 89999999998633443 69999888999999999999
Q ss_pred CCeeEccCCCEEEEeecC-----CeeEEEEeecch
Q 001150 202 NTSCELRSGDEVVFGSLG-----NHAYIFQQLLNE 231 (1138)
Q Consensus 202 ~~~~~L~~gDeI~f~~~~-----~~ayif~~~~~~ 231 (1138)
+..+.|++||+|.|+... ..+|+|+++..+
T Consensus 80 ~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 80 KQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114 (116)
T ss_dssp SSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC-
T ss_pred CCcEECCCCCEEEEeccCCCCCceEEEEEEccccc
Confidence 999999999999999976 689999988665
No 43
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=188.23 Aligned_cols=213 Identities=19% Similarity=0.242 Sum_probs=160.3
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHh-CCeEEEe
Q 001150 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF-GAKLLIF 465 (1138)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~-~a~ll~~ 465 (1138)
+.-+|+|+++..+ +..|..|.+++..+++++++.+ .....++.|||+|||| +++++||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~iLL~GppG--tGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPG--TGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGGSC---TTCCCCSEEEEESSSS--SCHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHHHh---CCCCCCceEEEECCCC--ccHHHHHHHHHHHcCCCcEEEE
Confidence 3457899998888 9999999999999999999854 2345668999999999 99999999999999 8887777
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 001150 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1138)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1138)
+.+.+.+
T Consensus 78 ~~~~l~~------------------------------------------------------------------------- 84 (322)
T 1xwi_A 78 SSSDLVS------------------------------------------------------------------------- 84 (322)
T ss_dssp ECCSSCC-------------------------------------------------------------------------
T ss_pred EhHHHHh-------------------------------------------------------------------------
Confidence 6543322
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 001150 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1138)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1138)
T Consensus 85 -------------------------------------------------------------------------------- 84 (322)
T 1xwi_A 85 -------------------------------------------------------------------------------- 84 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC----cchhhHHH----HHHhc---CCCcEEEE
Q 001150 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFK----SRLEK---LPDKVIVI 694 (1138)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~----~~~~~~lk----~~L~~---l~g~VvvI 694 (1138)
+|+++ .+..++.+|+.+.. .+|.||||||||.+...+ .+....++ ..|+. ..++|+||
T Consensus 85 ------~~~g~--~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 85 ------KWLGE--SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp ------SSCCS--CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred ------hhhhH--HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 11222 23468888888887 889999999999987522 22222233 23332 25789999
Q ss_pred eecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 001150 695 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1138)
Q Consensus 695 Gstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~ 774 (1138)
|+||+++. +|.+|.|||+..++|++|+.++|..||+.
T Consensus 154 ~atn~~~~-------------------------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~~ 190 (322)
T 1xwi_A 154 GATNIPWV-------------------------------------------LDSAIRRRFEKRIYIPLPEPHARAAMFKL 190 (322)
T ss_dssp EEESCTTT-------------------------------------------SCHHHHHTCCEEEECCCCCHHHHHHHHHH
T ss_pred EecCCccc-------------------------------------------CCHHHHhhcCeEEEeCCcCHHHHHHHHHH
Confidence 99998863 35668889999999999999999999998
Q ss_pred hhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhcccccc
Q 001150 775 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1138)
Q Consensus 775 ~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~l 816 (1138)
++......+ .+.+....+..+.||+|+||..+|.++.+.
T Consensus 191 ~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 191 HLGTTQNSL---TEADFRELGRKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp HHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHHHHHTH
T ss_pred HHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 875421111 223344456678899999999999987664
No 44
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=185.44 Aligned_cols=215 Identities=16% Similarity=0.233 Sum_probs=150.4
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
-+|+|+++..+ ++.|..|.+++..++++++..+.. +| ...++|||+||+| +++++|+||||...++.++.++..
T Consensus 5 ~~~~~~di~g~--~~~~~~l~~~i~~~~~~~~~l~~~-~l-~~~~GvlL~Gp~G--tGKTtLakala~~~~~~~i~i~g~ 78 (274)
T 2x8a_A 5 PNVTWADIGAL--EDIREELTMAILAPVRNPDQFKAL-GL-VTPAGVLLAGPPG--CGKTLLAKAVANESGLNFISVKGP 78 (274)
T ss_dssp -------CCHH--HHHHHHHHHHHTHHHHSHHHHHHT-TC-CCCSEEEEESSTT--SCHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHc-CC-CCCCeEEEECCCC--CcHHHHHHHHHHHcCCCEEEEEcH
Confidence 36899998887 999999999999999998865322 13 3345699999999 999999999999999887777642
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 001150 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1138)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1138)
.+..
T Consensus 79 ~l~~---------------------------------------------------------------------------- 82 (274)
T 2x8a_A 79 ELLN---------------------------------------------------------------------------- 82 (274)
T ss_dssp TTCS----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 2211
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 001150 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1138)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1138)
T Consensus 83 -------------------------------------------------------------------------------- 82 (274)
T 2x8a_A 83 -------------------------------------------------------------------------------- 82 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cchhhHHHHHHhcC--CCcEEEEeecc
Q 001150 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL--PDKVIVIGSHT 698 (1138)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~~~~~lk~~L~~l--~g~VvvIGstt 698 (1138)
+|+++ .+..|..+|+.+.. ..|.|+|||||+.+...+ .+..+.+-..|+.. ...+++++++|
T Consensus 83 ---~~~~~--~~~~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 83 ---MYVGE--SERAVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp ---STTHH--HHHHHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred ---hhhhH--HHHHHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 12222 34467888888766 789999999999865421 12223333333321 23789999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 699 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 699 ~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+++..||+ |+|||| |+..|+|++|+.++|.+||+.++..
T Consensus 155 ~p~~LD~a-------l~r~gR----------------------------------fd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 155 RPDIIDPA-------ILRPGR----------------------------------LDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp CGGGSCHH-------HHSTTS----------------------------------SCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred ChhhCCHh-------hcCccc----------------------------------CCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 99888888 778888 8899999999999999999987744
Q ss_pred hhhhhhhcCCcchhhHhh--hcCCCCcccccchhccccc
Q 001150 779 DSETLKMKGNLNHLRTVL--GRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 779 ~~e~l~~~~Nv~~l~~vL--~t~glsgaDL~~Lci~a~~ 815 (1138)
.. ......+++....+- .+.||+|+||..+|.++.+
T Consensus 194 ~~-~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 194 GT-KPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp TB-TTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred cc-CCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 11 122333444444443 4569999999999997655
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=4.2e-17 Score=179.71 Aligned_cols=221 Identities=22% Similarity=0.319 Sum_probs=152.0
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-ccccch
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 980 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG~~ 980 (1138)
+++|++.+++.|...+..+..+...........++.++||+||||||||++|+++|+.++.+++.++++.+.. .++|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4678999999998877643221111000000123468999999999999999999999999999999998765 455533
Q ss_pred -HHHHHHHHHHH-----hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc------cCCCCEEEEEe-
Q 001150 981 -EKYVKAVFSLA-----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAA- 1047 (1138)
Q Consensus 981 -E~~I~~lF~~A-----~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~------~~~~~VLVIaT- 1047 (1138)
...+..++..+ ....++||||||||.+...............+.+.|+..+++... ....++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34566666533 112468999999999976543333333334456677777765421 12346888888
Q ss_pred ---cCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHH----H-------HhhCCCC---CcccHHHHHHHcC-------
Q 001150 1048 ---TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV----I-------LAKEDLS---PDVDFDAIANMTD------- 1103 (1138)
Q Consensus 1048 ---TN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~----l-------l~k~~l~---~dvdl~~LA~~te------- 1103 (1138)
++.+..+++++++||+.++.|+.|+.+++.+|++. + +...+.. ++..++.|+..+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 45778999999999998899999999999999983 2 2223321 3344677777662
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 001150 1104 GYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1104 GySgaDL~~L~~~Aa~~ai 1122 (1138)
+.+.+++.++++.+...+.
T Consensus 256 ~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHH
T ss_pred ccCcHHHHHHHHHHHHhhh
Confidence 4577899999998876544
No 46
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.71 E-value=1.3e-16 Score=179.47 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=160.5
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
+.-+++|+++..+ +..|..|.+++..+++++++.+. .....+.|||+|||| +++++||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCCT---TCCCCCEEEEECSSS--SCHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCCeEEEECCCC--CcHHHHHHHHHHHHCCCEEEEc
Confidence 4456889998887 99999999999999999988643 234578999999999 9999999999999999998887
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 001150 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1138)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1138)
.+.+.+
T Consensus 84 ~~~l~~-------------------------------------------------------------------------- 89 (322)
T 3eie_A 84 SSDLVS-------------------------------------------------------------------------- 89 (322)
T ss_dssp HHHHHT--------------------------------------------------------------------------
T ss_pred hHHHhh--------------------------------------------------------------------------
Confidence 643322
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1138)
T Consensus 90 -------------------------------------------------------------------------------- 89 (322)
T 3eie_A 90 -------------------------------------------------------------------------------- 89 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC----cch----hhHHHHHHh---cCCCcEEEEe
Q 001150 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDS----YSTFKSRLE---KLPDKVIVIG 695 (1138)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~----~~~----~~~lk~~L~---~l~g~VvvIG 695 (1138)
+|+++ .+..++.+|+.+.. ..|.||||||||.+...+ .+. .+.+...|+ ...++|+|||
T Consensus 90 -----~~~g~--~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 159 (322)
T 3eie_A 90 -----KWMGE--SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 159 (322)
T ss_dssp -----TTGGG--HHHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEE
T ss_pred -----cccch--HHHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 11122 34568888998888 899999999999987532 222 233333333 2357899999
Q ss_pred ecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 001150 696 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 775 (1138)
Q Consensus 696 stt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~ 775 (1138)
+||+++. +|.+|.+||+..++|++|+.++|.+||+.+
T Consensus 160 atn~~~~-------------------------------------------ld~al~~Rf~~~i~~~~p~~~~r~~il~~~ 196 (322)
T 3eie_A 160 ATNIPWQ-------------------------------------------LDSAIRRRFERRIYIPLPDLAARTTMFEIN 196 (322)
T ss_dssp EESCGGG-------------------------------------------SCHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_pred ecCChhh-------------------------------------------CCHHHHcccCeEEEeCCCCHHHHHHHHHHH
Confidence 9998763 456788899999999999999999999987
Q ss_pred hhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccc
Q 001150 776 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 817 (1138)
Q Consensus 776 L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls 817 (1138)
+.... ..+ .+......+-.+.||+|+||..+|..+.+..
T Consensus 197 ~~~~~--~~~-~~~~l~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 197 VGDTP--CVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp HTTCC--CCC-CHHHHHHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred hccCC--CCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 75411 111 1223344556678999999999998876643
No 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.69 E-value=3.9e-16 Score=177.01 Aligned_cols=200 Identities=19% Similarity=0.220 Sum_probs=143.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--ceEEEecccccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS 974 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~--~fi~Id~seL~s 974 (1138)
..+|++++|.+..++.+..++.. +..+ ..+.+++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 45699999999999887665532 1111 223468999999999999999999999964 888888766443
Q ss_pred ccccc-------------------------------------------------hHHHHHHHHHHHhc---------cCC
Q 001150 975 KWFGE-------------------------------------------------GEKYVKAVFSLASK---------IAP 996 (1138)
Q Consensus 975 ~~iG~-------------------------------------------------~E~~I~~lF~~A~k---------~~P 996 (1138)
.+.+. ....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 12334444443322 126
Q ss_pred eEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec-----------CCCCCCcHHHHhcCCce
Q 001150 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-----------NRPFDLDEAVIRRLPRR 1065 (1138)
Q Consensus 997 sIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT-----------N~p~~Ld~aLlrRFd~~ 1065 (1138)
+||||||||.+. ...++.|+..++.. ..+++++++. |.+..+++++++||. .
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~ 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-I 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-E
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-E
Confidence 899999999883 23445555555443 2346665554 347789999999995 5
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001150 1066 LMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1066 I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai 1122 (1138)
+.|+.|+.+++.+|++..+...++. .+..+..|+..+.+.+++++.++|+.|+..|.
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCR 311 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999876654 44557889999985588999999999888764
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=3.3e-17 Score=179.23 Aligned_cols=178 Identities=22% Similarity=0.280 Sum_probs=131.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccch----HHHHHHHHHHHhccCCeEEEEcCCccccc
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG----EKYVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~----E~~I~~lF~~A~k~~PsIIfIDEID~L~~ 1009 (1138)
.+..++||+||||||||++|+++|+.++.+|+.+++++. +.|.. ...++.+|..+....++||||||||.+++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD 138 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc
Confidence 455789999999999999999999999999999988762 33333 35678899999888899999999999976
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcH-HHHhcCCceEEecCCCHHHHHHHHHHHHhhCC
Q 001150 1010 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1138)
Q Consensus 1010 ~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~-aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~ 1088 (1138)
.+... ......+++.|...+++... ...+++||+|||.++.+++ .+++||...+.++. ..+|.+|.+.+.....
T Consensus 139 ~~~~~--~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~--l~~r~~i~~i~~~~~~ 213 (272)
T 1d2n_A 139 YVPIG--PRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPN--IATGEQLLEALELLGN 213 (272)
T ss_dssp CBTTT--TBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCC--EEEHHHHHHHHHHHTC
T ss_pred cCCCC--hhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcCCC--ccHHHHHHHHHHhcCC
Confidence 54311 11223455556666665432 2467899999999988887 67789987776654 4444555555444433
Q ss_pred CCCcccHHHHHHHcCCC----cHHHHHHHHHHHHHH
Q 001150 1089 LSPDVDFDAIANMTDGY----SGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1089 l~~dvdl~~LA~~teGy----SgaDL~~L~~~Aa~~ 1120 (1138)
+ .+.++..++..+.|| ..+++.++++.|...
T Consensus 214 ~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 214 F-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp S-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred C-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 3 466789999999997 678888888887653
No 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.69 E-value=8.4e-16 Score=172.71 Aligned_cols=194 Identities=20% Similarity=0.225 Sum_probs=144.5
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
.+|++++|.+.+++.+...+..... . ..+..++||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 3799999999999999988864211 1 23446899999999999999999999999999999987653
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc--------------cCCCCEE
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT--------------KDTERIL 1043 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~--------------~~~~~VL 1043 (1138)
....+..++.. ...+++||||||+.+. ..+.+.|+..++.... ....+++
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC------------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 12333344332 3467999999999883 1223333333433210 0112589
Q ss_pred EEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
+|++||....+++++++||+.++.|+.|+.+++.++++.++...++. .+..+..|+..+.| +.+++.++++.+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877654 34457778886666 5678888888876544
No 50
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.69 E-value=7e-17 Score=184.29 Aligned_cols=226 Identities=22% Similarity=0.314 Sum_probs=155.7
Q ss_pred ccchHHHHHHHHHHHhcccCchhhhh-cCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-ccccch
Q 001150 903 IGALENVKDTLKELVMLPLQRPELFC-KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 980 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f~-~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG~~ 980 (1138)
++|++.+++.+...+........... ......+..++||+||||||||++|++||+.++.+|+.++++++.. .|+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 57899999999888853322211110 1222335678999999999999999999999999999999998864 377765
Q ss_pred -HHHHHHHHHHH----hccCCeEEEEcCCcccccCCCCcc--hHHHHHHHHHHHHHHhcCCCc---------c-------
Q 001150 981 -EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRT---------K------- 1037 (1138)
Q Consensus 981 -E~~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~--~~~al~~il~~LL~~Ldgl~~---------~------- 1037 (1138)
...+..+|..+ ....++||||||||.+...+.... .......+.+.|+..|++... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677787766 444679999999999976654322 122223477888888874310 0
Q ss_pred -CCCCEEEEEecCCC----------CC-----------------------------------CcHHHHhcCCceEEecCC
Q 001150 1038 -DTERILVLAATNRP----------FD-----------------------------------LDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1038 -~~~~VLVIaTTN~p----------~~-----------------------------------Ld~aLlrRFd~~I~v~lP 1071 (1138)
...++++|+++|.. .. +.++|++||+.++.|..|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 12344555555431 11 789999999999999999
Q ss_pred CHHHHHHHHHH----HHhh-------CCCC---CcccHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 001150 1072 DAPNRAKILQV----ILAK-------EDLS---PDVDFDAIAN--MTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1138)
Q Consensus 1072 d~eeR~eIL~~----ll~k-------~~l~---~dvdl~~LA~--~teGySgaDL~~L~~~Aa~~ai~eiie~ 1128 (1138)
+.+++.+|+.. ++.. .+.. .+..++.|+. ....+..++|+++++.+...++.++.+.
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM 329 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc
Confidence 99999999886 3321 2222 2333566665 3345667999999999999888776543
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.68 E-value=1.4e-16 Score=182.13 Aligned_cols=222 Identities=16% Similarity=0.203 Sum_probs=156.5
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHh
Q 001150 377 EDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAH 456 (1138)
Q Consensus 377 ~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~ 456 (1138)
+.+. ..+..+.-.++|+++..+ +..|..|.+++..+++++++.+. ....++.|||+||+| +++++||||||+
T Consensus 35 ~~~~-~~~~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppG--tGKT~la~ala~ 106 (355)
T 2qp9_X 35 GALS-SAILSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAVAT 106 (355)
T ss_dssp -------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTT--SCHHHHHHHHHH
T ss_pred HHHh-hhhcccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCC--CcHHHHHHHHHH
Confidence 3344 333445668999998877 99999999999999999988542 345667899999999 999999999999
Q ss_pred HhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 001150 457 YFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMET 536 (1138)
Q Consensus 457 ~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1138)
+++++++.++.+.|.+
T Consensus 107 ~~~~~~~~v~~~~l~~---------------------------------------------------------------- 122 (355)
T 2qp9_X 107 EANSTFFSVSSSDLVS---------------------------------------------------------------- 122 (355)
T ss_dssp HHTCEEEEEEHHHHHS----------------------------------------------------------------
T ss_pred HhCCCEEEeeHHHHhh----------------------------------------------------------------
Confidence 9999999887643332
Q ss_pred cccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCC
Q 001150 537 DTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCE 616 (1138)
Q Consensus 537 ~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~ 616 (1138)
T Consensus 123 -------------------------------------------------------------------------------- 122 (355)
T 2qp9_X 123 -------------------------------------------------------------------------------- 122 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcC----Ccchh----hHHHHHHhcC-
Q 001150 617 GGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSY----STFKSRLEKL- 687 (1138)
Q Consensus 617 ~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~----~~~~~----~~lk~~L~~l- 687 (1138)
+|+++ .+..++.+|+.+.. ..|.||||||||.+... ..+.. +.|...|+.+
T Consensus 123 ---------------~~~g~--~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 123 ---------------KWMGE--SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp ---------------CC-----CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred ---------------hhcch--HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 01111 23357788888877 88999999999997752 22222 3333333322
Q ss_pred --CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCH
Q 001150 688 --PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQD 765 (1138)
Q Consensus 688 --~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~ 765 (1138)
..+|+|||+||+++. ++.+|.+||+..+.|++|+.
T Consensus 183 ~~~~~v~vI~atn~~~~-------------------------------------------ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQ-------------------------------------------LDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp ---CCEEEEEEESCGGG-------------------------------------------SCHHHHHTCCEEEECCCCCH
T ss_pred ccCCCeEEEeecCCccc-------------------------------------------CCHHHHcccCEEEEeCCcCH
Confidence 468999999998763 45667889999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhcccccc
Q 001150 766 EALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1138)
Q Consensus 766 E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~l 816 (1138)
++|..||+.++..... .+ .+.+....+..+.||+|+||..+|..+.+.
T Consensus 220 ~~r~~il~~~l~~~~~--~~-~~~~l~~la~~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 220 AARTTMFEINVGDTPS--VL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp HHHHHHHHHHHTTSCB--CC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC--CC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999987754211 11 223344455677899999999999876653
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.67 E-value=8.3e-17 Score=179.51 Aligned_cols=214 Identities=20% Similarity=0.330 Sum_probs=161.0
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
.-.++|+++..+ +..|..|.+.+-.++++++.. +++ ...++.|||+||+| +++++||||||++.+++++.++
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~~~vLL~Gp~G--tGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCSEEEEECSSS--SSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC---CCCCceEEEECCCC--cCHHHHHHHHHHHhCCCEEEEE
Confidence 346899998777 999999999999999998864 332 24567899999999 9999999999999999998887
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 001150 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1138)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1138)
...+..
T Consensus 82 ~~~l~~-------------------------------------------------------------------------- 87 (301)
T 3cf0_A 82 GPELLT-------------------------------------------------------------------------- 87 (301)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred hHHHHh--------------------------------------------------------------------------
Confidence 543321
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1138)
+|+|
T Consensus 88 -----------~~~g----------------------------------------------------------------- 91 (301)
T 3cf0_A 88 -----------MWFG----------------------------------------------------------------- 91 (301)
T ss_dssp -----------HHHT-----------------------------------------------------------------
T ss_pred -----------hhcC-----------------------------------------------------------------
Confidence 0111
Q ss_pred cccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC-----------cchhhHHHHHHhcC--CCcEEE
Q 001150 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-----------SDSYSTFKSRLEKL--PDKVIV 693 (1138)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~-----------~~~~~~lk~~L~~l--~g~Vvv 693 (1138)
+ .+..+..+|+.+.. ..|.||||||||.+.... ....+.|...|+.+ ..+|+|
T Consensus 92 ---------~--~~~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 92 ---------E--SEANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp ---------T--CTTHHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred ---------c--hHHHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 0 00136677887777 789999999999977411 12234444555433 458999
Q ss_pred EeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 001150 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1138)
Q Consensus 694 IGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk 773 (1138)
||+||+++..|++ |+|+|| |+..++|++|+.++|.+||+
T Consensus 158 i~atn~~~~ld~a-------l~r~gR----------------------------------f~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 158 IGATNRPDIIDPA-------ILRPGR----------------------------------LDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp EEEESCGGGSCGG-------GGSTTS----------------------------------SCEEEECCCCCHHHHHHHHH
T ss_pred EEecCCccccChH-------HhcCCc----------------------------------cceEEecCCcCHHHHHHHHH
Confidence 9999999877777 677777 87899999999999999999
Q ss_pred HhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccc
Q 001150 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 817 (1138)
Q Consensus 774 ~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls 817 (1138)
..+.+. ....+++....+..+.||+|.||..+|..+.+..
T Consensus 197 ~~l~~~----~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 197 ANLRKS----PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236 (301)
T ss_dssp HHHTTS----CBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHccC----CCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 877552 2334566666667789999999999998776644
No 53
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.66 E-value=1.9e-16 Score=186.20 Aligned_cols=224 Identities=18% Similarity=0.273 Sum_probs=157.8
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHH
Q 001150 375 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 454 (1138)
Q Consensus 375 ~~~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakAL 454 (1138)
+.+.+...|+ .+.-.++|+++..+ +..|..|.+++..+++++++.. .....++.|||+|||| +++++|||||
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPG--TGKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTTTS---GGGCCCSEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHhh---ccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 3344444444 45668999998877 9999999999999999998853 2335568999999999 9999999999
Q ss_pred HhHh-CCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 001150 455 AHYF-GAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPK 533 (1138)
Q Consensus 455 A~~~-~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1138)
|+++ +++++.++.+.+.+
T Consensus 188 a~~~~~~~~~~v~~~~l~~------------------------------------------------------------- 206 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVS------------------------------------------------------------- 206 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHHh-------------------------------------------------------------
Confidence 9999 88888777644432
Q ss_pred ccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCC
Q 001150 534 METDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGG 613 (1138)
Q Consensus 534 ~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~ 613 (1138)
+|+|
T Consensus 207 ------------------------~~~g---------------------------------------------------- 210 (444)
T 2zan_A 207 ------------------------KWLG---------------------------------------------------- 210 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------hhcc----------------------------------------------------
Confidence 0111
Q ss_pred CCCCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcC----CcchhhHHHHHHh-c--
Q 001150 614 QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSRLE-K-- 686 (1138)
Q Consensus 614 ~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~----~~~~~~~lk~~L~-~-- 686 (1138)
+ .+..++.+|+.+.. ..|.||||||||.+... ..+....++..|. .
T Consensus 211 ----------------------~--~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 211 ----------------------E--SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp -------------------------CCCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTT
T ss_pred ----------------------h--HHHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHh
Confidence 0 00136677888777 89999999999998652 2233333444332 2
Q ss_pred ----CCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeC
Q 001150 687 ----LPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHM 762 (1138)
Q Consensus 687 ----l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~l 762 (1138)
.+++|+|||+||+++. ++.+|.+||+..+.|++
T Consensus 264 ~~~~~~~~v~vI~atn~~~~-------------------------------------------ld~al~rRf~~~i~i~~ 300 (444)
T 2zan_A 264 GVGVDNDGILVLGATNIPWV-------------------------------------------LDSAIRRRFEKRIYIPL 300 (444)
T ss_dssp CSSCCCSSCEEEEEESCGGG-------------------------------------------SCHHHHTTCCEEEECCC
T ss_pred CcccCCCCEEEEecCCCccc-------------------------------------------cCHHHHhhcceEEEeCC
Confidence 2468999999998863 35668889999999999
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhcccccc
Q 001150 763 PQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1138)
Q Consensus 763 Pd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~l 816 (1138)
|+.++|..||+.++..... .+ .+.+....+..+.||+|+||..+|..+.+.
T Consensus 301 P~~~~r~~il~~~l~~~~~--~l-~~~~l~~la~~t~G~sgadl~~l~~~a~~~ 351 (444)
T 2zan_A 301 PEAHARAAMFRLHLGSTQN--SL-TEADFQELGRKTDGYSGADISIIVRDALMQ 351 (444)
T ss_dssp CCHHHHHHHHHHHHTTSCE--EC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHTH
T ss_pred cCHHHHHHHHHHHHhcCCC--CC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999988754211 11 223444556678899999999999987663
No 54
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=1.7e-16 Score=191.10 Aligned_cols=210 Identities=21% Similarity=0.289 Sum_probs=140.1
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-----
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----- 974 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s----- 974 (1138)
..++.|++++++.+.+.+...... . ..+...+||+||||||||+||++||..++.+++.+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------K--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------S--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------c--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 456899999999988776532211 1 114468999999999999999999999999999998876533
Q ss_pred ----ccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-----------CC
Q 001150 975 ----KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DT 1039 (1138)
Q Consensus 975 ----~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-----------~~ 1039 (1138)
.++|...+.+.+.|..+....| ||||||||.+...+. ....+.|+..|+..... +.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 5667777777888888876665 999999999864321 12345566666543211 11
Q ss_pred CCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHH-----hhCCCC------CcccHHHHHHHcCC-CcH
Q 001150 1040 ERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL-----AKEDLS------PDVDFDAIANMTDG-YSG 1107 (1138)
Q Consensus 1040 ~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll-----~k~~l~------~dvdl~~LA~~teG-ySg 1107 (1138)
.+++||+|||.++.++++|++|| .+|.|+.|+.+++.+|++.++ ...++. .+..+..|+....+ ...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 57899999999999999999999 589999999999999998876 223332 12234555543332 345
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001150 1108 SDLKNLCVTAAHRPIKEILE 1127 (1138)
Q Consensus 1108 aDL~~L~~~Aa~~ai~eiie 1127 (1138)
++|++.+..++..+..+++.
T Consensus 302 R~L~~~i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVA 321 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 67776666666655555554
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.65 E-value=1.3e-15 Score=181.15 Aligned_cols=211 Identities=17% Similarity=0.289 Sum_probs=158.0
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 001150 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1138)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1138)
.++|+++... +..+..|.+.+...++++++.+... ...++.|||+||+| +++++||||||++++++++.++...
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g--~~~~~~vLL~GppG--tGKT~lAraia~~~~~~fv~vn~~~ 273 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHT--CCCCCEEEEECSTT--SSHHHHHHHHHHHCSSEEEEEEHHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCcEEEECcCC--CCHHHHHHHHHHHhCCCEEEEEchH
Confidence 3678887766 8899999999999999988753211 34567899999999 9999999999999999999888643
Q ss_pred ccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 001150 470 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 549 (1138)
Q Consensus 470 ~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 549 (1138)
+...
T Consensus 274 l~~~---------------------------------------------------------------------------- 277 (489)
T 3hu3_A 274 IMSK---------------------------------------------------------------------------- 277 (489)
T ss_dssp HHTS----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 3320
Q ss_pred ccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccccc
Q 001150 550 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 629 (1138)
Q Consensus 550 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 629 (1138)
T Consensus 278 -------------------------------------------------------------------------------- 277 (489)
T 3hu3_A 278 -------------------------------------------------------------------------------- 277 (489)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC----cch----hhHHHHHHhc--CCCcEEEEeeccc
Q 001150 630 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDS----YSTFKSRLEK--LPDKVIVIGSHTH 699 (1138)
Q Consensus 630 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~----~~~----~~~lk~~L~~--l~g~VvvIGstt~ 699 (1138)
|.++ .+..+..+|+.+.. ..|.||||||||.+...+ .+. .+.|...|+. .+.+|+||++||+
T Consensus 278 ---~~g~--~~~~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 278 ---LAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp ---CTTH--HHHHHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred ---hcch--hHHHHHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 0011 22346677887777 789999999999987633 222 2333334442 3578999999999
Q ss_pred CCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhh
Q 001150 700 TDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 779 (1138)
Q Consensus 700 ~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~ 779 (1138)
++..+++ |+|+|| |...++|++|+.++|..||+.++..
T Consensus 350 ~~~Ld~a-------l~r~gR----------------------------------f~~~i~i~~P~~~eR~~IL~~~~~~- 387 (489)
T 3hu3_A 350 PNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN- 387 (489)
T ss_dssp GGGBCGG-------GGSTTS----------------------------------SCEEEECCCCCHHHHHHHHHHHTTT-
T ss_pred ccccCHH-------HhCCCc----------------------------------CceEEEeCCCCHHHHHHHHHHHHhc-
Confidence 9877777 777777 7789999999999999999987754
Q ss_pred hhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 780 SETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 780 ~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
+....++.....+..+.||+++||..+|..+.+
T Consensus 388 ---~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 388 ---MKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (489)
T ss_dssp ---SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred ---CCCcchhhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 334455555666677889999999988875433
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=1.6e-15 Score=167.93 Aligned_cols=212 Identities=17% Similarity=0.248 Sum_probs=147.6
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc----
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---- 974 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s---- 974 (1138)
+++|.+.+++.+...+...... -....+|...+||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT-----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4568888888888777532100 01223455689999999999999999999998 67799999887633
Q ss_pred -ccccchHHHH-----HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc-------CCCC
Q 001150 975 -KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTER 1041 (1138)
Q Consensus 975 -~~iG~~E~~I-----~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~-------~~~~ 1041 (1138)
.++|....++ ..+.......+.+||||||||.+- ..+.+.|+..++..... +-.+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 2222211110 233344445566999999999872 23444555555433211 1247
Q ss_pred EEEEEecCC--------------------------CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC-------C
Q 001150 1042 ILVLAATNR--------------------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------D 1088 (1138)
Q Consensus 1042 VLVIaTTN~--------------------------p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~-------~ 1088 (1138)
+++|+|||. ...++++|++||+.++.+.+|+.+++.+|++.++.+. +
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 889999998 4578899999999999999999999999999987652 1
Q ss_pred CC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHhhh
Q 001150 1089 LS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1138)
Q Consensus 1089 l~---~dvdl~~LA~~te--GySgaDL~~L~~~Aa~~ai~eiie~ek 1130 (1138)
.. .+..++.|+.... .++.++|+++++.++..++.+.+....
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~ 287 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGE 287 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTS
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence 12 2334667777655 568899999999999988887776544
No 57
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.64 E-value=4.9e-15 Score=173.73 Aligned_cols=225 Identities=22% Similarity=0.322 Sum_probs=159.5
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc-ccccc-
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 979 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s-~~iG~- 979 (1138)
+|+|++++++.|...+..+..+...+.......+++++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5789999999999988776655554433332335678999999999999999999999999999999999887 58885
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001150 980 GEKYVKAVFSLAS------------------------------------------------------------------- 992 (1138)
Q Consensus 980 ~E~~I~~lF~~A~------------------------------------------------------------------- 992 (1138)
.+..++.+|..+.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 6777766665541
Q ss_pred -----------------------------------------------------------------------cc-CCeEEE
Q 001150 993 -----------------------------------------------------------------------KI-APSVIF 1000 (1138)
Q Consensus 993 -----------------------------------------------------------------------k~-~PsIIf 1000 (1138)
+. ...|||
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 00 235899
Q ss_pred EcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc------CCCCEEEEEec----CCCCCCcHHHHhcCCceEEecC
Q 001150 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~------~~~~VLVIaTT----N~p~~Ld~aLlrRFd~~I~v~l 1070 (1138)
+||||.+.....+....-....+.+.||..+++.... +..++++|+|. +.+.++.|+|+.||+.++.|+.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 9999999754332222223345777888888874321 45789999997 3455566999999999999999
Q ss_pred CCHHHHHHHHHH-----------HHhhCCCC---CcccHHHHHHH-------cCCCcHHHHHHHHHHHHHHHHHHHH
Q 001150 1071 PDAPNRAKILQV-----------ILAKEDLS---PDVDFDAIANM-------TDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1138)
Q Consensus 1071 Pd~eeR~eIL~~-----------ll~k~~l~---~dvdl~~LA~~-------teGySgaDL~~L~~~Aa~~ai~eii 1126 (1138)
++.++..+|+.. .+...+.. .+..+..|++. |.....+.|+.++..++.....++.
T Consensus 336 lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~ 412 (444)
T 1g41_A 336 LSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS 412 (444)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcc
Confidence 999999999931 22222322 23335666653 4566778888888877776666654
No 58
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.61 E-value=3.1e-15 Score=166.46 Aligned_cols=194 Identities=20% Similarity=0.244 Sum_probs=139.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
.+|++++|.+..++.|...+.... .. ..+..++||+||||||||++|+++++.++.+|+.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~-------~~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK-------AR--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH-------HH--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH-------cc--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 478999999999999888775311 00 123367999999999999999999999999999998876532
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC--------c------cCCCCEE
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--------T------KDTERIL 1043 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~--------~------~~~~~VL 1043 (1138)
...+...|..+ ...+++||||||+.+. ... ...|+..++... . ....+++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----~~~-------~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----RQA-------EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----HHH-------HHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----cch-------HHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 12222233221 1467899999999873 111 122222222211 0 0113588
Q ss_pred EEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
+|++||.+..+++++.+||+.++.++.|+.+++.++++.++...++. .+..+..|+..+.| +++++.++++.+...
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999999999998876654 34457888888877 457888888877543
No 59
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.61 E-value=1.1e-15 Score=154.94 Aligned_cols=108 Identities=24% Similarity=0.381 Sum_probs=90.0
Q ss_pred cccCCcchhhcccCC-CCcceeeeC-CeEEEcCCCCcceeecCCCCccceEEEEEEe--cC--CceEEEEEEeCCCceEE
Q 001150 121 FETSTPWCRLLSQSG-QNSNVPICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ--SE--GSAVAMVESIGSKGLQV 194 (1138)
Q Consensus 121 ~~~~~pWgrL~s~~~-~~~~~~i~~-~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~--~~--~~~~~~led~s~nGt~V 194 (1138)
.....+||+|+...+ ....+.|.. ..|+|||+..|||.|.+..||..||+|.... .+ ....+||+|+|+|||||
T Consensus 12 ~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~V 91 (151)
T 2jqj_A 12 SSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFI 91 (151)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEE
T ss_pred CCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEE
Confidence 345578999998876 457888884 8999999999999999999999999999842 11 23468999999999999
Q ss_pred cCeeccCCCeeEccCCCEEEEeecCCeeEEEEeecch
Q 001150 195 NGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLNE 231 (1138)
Q Consensus 195 Ng~~~gk~~~~~L~~gDeI~f~~~~~~ayif~~~~~~ 231 (1138)
||++|.++ .+.|++||+|.|+.. ..|+|+.....
T Consensus 92 Ng~~i~~~-~~~L~~GD~I~lG~~--~~~~f~~~~~~ 125 (151)
T 2jqj_A 92 NGNRLVKK-DYILKNGDRIVFGKS--CSFLFKYASSS 125 (151)
T ss_dssp TTEECCSS-CEEECSSEEEEETTT--EEEEEEECSSC
T ss_pred CCEEcCCC-ceECCCCCEEEECCC--cEEEEEEcCCC
Confidence 99999999 999999999999872 46788765443
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.61 E-value=2.8e-15 Score=176.73 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=79.6
Q ss_pred CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEe---------cC---CCCCCcHHHHhcCC
Q 001150 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA---------TN---RPFDLDEAVIRRLP 1063 (1138)
Q Consensus 996 PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaT---------TN---~p~~Ld~aLlrRFd 1063 (1138)
|.|+||||+|.|- ....+.|+..+... ..+++|++| ++ .++.|++.+++||.
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 3699999999882 34556666666543 234655566 33 27789999999995
Q ss_pred ceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc-CCCcHHHHHHHHHHHHHHHH
Q 001150 1064 RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT-DGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1064 ~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~t-eGySgaDL~~L~~~Aa~~ai 1122 (1138)
.+.|+.++.++..++++..+...++. ++..+..++..+ .| +.+...++++.|...|.
T Consensus 360 -~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~ 418 (456)
T 2c9o_A 360 -IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAK 418 (456)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHH
T ss_pred -eeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 47999999999999999988766554 344567788887 66 67777788888765553
No 61
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.61 E-value=1.8e-15 Score=149.08 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=90.7
Q ss_pred CcchhhcccCCCCcceeeeCC-------------eEEEcCCCCcceeecCC-CCccceEEEEEEecCCceEEEEEEeCCC
Q 001150 125 TPWCRLLSQSGQNSNVPICAS-------------IFTVGSSRQCNFPLKDQ-AISAVLCKIKHVQSEGSAVAMVESIGSK 190 (1138)
Q Consensus 125 ~pWgrL~s~~~~~~~~~i~~~-------------~~tvGr~~~cd~~l~~~-~~s~~hcki~~~~~~~~~~~~led~s~n 190 (1138)
..||||.++..++|++.|..+ .++|||+..||+.|.+. .||..||+|..... +. +||+|+|+|
T Consensus 3 ~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~-g~--~~l~DlS~N 79 (127)
T 1g6g_A 3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGED-GN--LLLNDISTN 79 (127)
T ss_dssp EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTT-SC--EEEEECCSS
T ss_pred ceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCC-Cc--EEEEECCcC
Confidence 579999999999999999987 99999999999999997 59999999987432 22 799999999
Q ss_pred ceEEcCeeccCCCeeEccCCCEEEEeecC---CeeEEEEeecc
Q 001150 191 GLQVNGKNLKKNTSCELRSGDEVVFGSLG---NHAYIFQQLLN 230 (1138)
Q Consensus 191 Gt~VNg~~~gk~~~~~L~~gDeI~f~~~~---~~ayif~~~~~ 230 (1138)
||||||+++.++..+.|++||+|.|+... ...|+|+.-..
T Consensus 80 GT~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~~~~ 122 (127)
T 1g6g_A 80 GTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFINDK 122 (127)
T ss_dssp CCEETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEECHH
T ss_pred CeEECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEeCch
Confidence 99999999999999999999999999864 35688875433
No 62
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.59 E-value=1.6e-15 Score=176.16 Aligned_cols=109 Identities=20% Similarity=0.357 Sum_probs=99.3
Q ss_pred cCCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCCC---------ccceEEEEEEe-cCCceEEEEEEeCCCce
Q 001150 123 TSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAI---------SAVLCKIKHVQ-SEGSAVAMVESIGSKGL 192 (1138)
Q Consensus 123 ~~~pWgrL~s~~~~~~~~~i~~~~~tvGr~~~cd~~l~~~~~---------s~~hcki~~~~-~~~~~~~~led~s~nGt 192 (1138)
...|||+|++....+++++|..+.|+|||+..||++|+++.+ |..||+|.+.. ..+..++||+|.|+|||
T Consensus 6 ~~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt 85 (419)
T 3i6u_A 6 TPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT 85 (419)
T ss_dssp CCCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE
T ss_pred cCCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc
Confidence 346899999999999999999999999999999999999876 99999998753 44555799999999999
Q ss_pred EEcCeeccCCCeeEccCCCEEEEeecCCeeEEEEeecch
Q 001150 193 QVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLNE 231 (1138)
Q Consensus 193 ~VNg~~~gk~~~~~L~~gDeI~f~~~~~~ayif~~~~~~ 231 (1138)
||||++++++.+..|++||+|.|+.+.++.|+|.++...
T Consensus 86 ~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~ 124 (419)
T 3i6u_A 86 FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVD 124 (419)
T ss_dssp EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSS
T ss_pred eECcccccCCCcccCCCCCEeeeeccccceEEEeccccc
Confidence 999999999999999999999999999999999987544
No 63
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.59 E-value=1.8e-14 Score=170.83 Aligned_cols=215 Identities=16% Similarity=0.218 Sum_probs=153.6
Q ss_pred cccCCc-cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 001150 382 GILDGT-NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1138)
Q Consensus 382 ~vv~~~-~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1138)
.++..+ ...++|+++-.. +..|..|.+.+.. +++++.. .++ ...++.|||+||+| +++++||||+|++.+
T Consensus 3 ~~~~~~~~~~~~f~di~G~--~~~~~~l~e~v~~-l~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~Laraia~~~~ 74 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGA--EEAIEELKEVVEF-LKDPSKFNRIG---ARMPKGILLVGPPG--TGKTLLARAVAGEAN 74 (476)
T ss_dssp --CCCCCSCCCCGGGCCSC--HHHHHHHHHHHHH-HHCTHHHHTTT---CCCCSEEEEECCTT--SSHHHHHHHHHHHHT
T ss_pred ceeccCCCCCCCHHHhCCc--HHHHHHHHHHHHH-hhChHHHhhcC---CCCCCeEEEECCCC--CCHHHHHHHHHHHcC
Confidence 345555 788999998777 8899999887653 6655432 222 23456799999999 999999999999999
Q ss_pred CeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 001150 460 AKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTT 539 (1138)
Q Consensus 460 a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1138)
++++.++.+.|..
T Consensus 75 ~~f~~is~~~~~~------------------------------------------------------------------- 87 (476)
T 2ce7_A 75 VPFFHISGSDFVE------------------------------------------------------------------- 87 (476)
T ss_dssp CCEEEEEGGGTTT-------------------------------------------------------------------
T ss_pred CCeeeCCHHHHHH-------------------------------------------------------------------
Confidence 9988776533321
Q ss_pred ccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCc
Q 001150 540 LTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGH 619 (1138)
Q Consensus 540 ~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~ 619 (1138)
.|
T Consensus 88 ------------------~~------------------------------------------------------------ 89 (476)
T 2ce7_A 88 ------------------LF------------------------------------------------------------ 89 (476)
T ss_dssp ------------------CC------------------------------------------------------------
T ss_pred ------------------HH------------------------------------------------------------
Confidence 00
Q ss_pred ccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc-----------chhhHHHHHHhcC-
Q 001150 620 GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----------DSYSTFKSRLEKL- 687 (1138)
Q Consensus 620 ~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~-----------~~~~~lk~~L~~l- 687 (1138)
++. ....++.+|+.+.. ..|.||||||||.+...+. +..+.|...|+.+
T Consensus 90 --------------~g~--~~~~~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 90 --------------VGV--GAARVRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp --------------TTH--HHHHHHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred --------------hcc--cHHHHHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 000 11236677888877 7899999999999654221 1223333333322
Q ss_pred -CCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHH
Q 001150 688 -PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDE 766 (1138)
Q Consensus 688 -~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E 766 (1138)
+.+|+||++||+++..|++ |+|||| |+..|.|++|+.+
T Consensus 151 ~~~~viVIaaTn~~~~Ld~a-------llR~gR----------------------------------Fd~~i~i~~Pd~~ 189 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPA-------LLRPGR----------------------------------FDKKIVVDPPDML 189 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGG-------GGSTTS----------------------------------SCEEEECCCCCHH
T ss_pred CCCCEEEEEecCChhhhchh-------hcccCc----------------------------------ceeEeecCCCCHH
Confidence 3589999999999877777 778888 8789999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccc
Q 001150 767 ALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 813 (1138)
Q Consensus 767 ~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a 813 (1138)
+|.+||+.++.+ .....+++....+-.+.|+.|+||..+|..+
T Consensus 190 ~R~~Il~~~~~~----~~l~~~v~l~~la~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 190 GRKKILEIHTRN----KPLAEDVNLEIIAKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp HHHHHHHHHHTT----SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCcchhhHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999987754 2334455555566778999999998887654
No 64
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.59 E-value=7e-14 Score=144.53 Aligned_cols=186 Identities=23% Similarity=0.241 Sum_probs=133.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEecccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 972 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL 972 (1138)
..|++++|.+...+.|.+.+.. . . ..++||+||+|+|||++|+++++.+ ...++.+++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~----------~---~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER----------K---N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT----------T---C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCHHHHcCcHHHHHHHHHHHhC----------C---C-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 5688999999999999888753 1 1 1359999999999999999999986 456777776553
Q ss_pred ccccccchHHHHHHHHHH-Hh-----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEE
Q 001150 973 TSKWFGEGEKYVKAVFSL-AS-----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~-A~-----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIa 1046 (1138)
.. ...+...+.. .. ...+.||||||+|.+.. ...+.|+..++.. ..++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~----~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMY----SKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------HHHHHHHHHHHHT----TTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------HHHHHHHHHHHhc----CCCCeEEE
Confidence 22 1122222222 21 24688999999998731 1123333333332 34678889
Q ss_pred ecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
+||.+..+++.+.+||. .+.++.|+.+++.++++.++...+.. .+..+..|+..+.| ..+.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 99999999999999995 89999999999999999988766554 34457788888877 5567777777776543
No 65
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=155.54 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=55.7
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCccc-ccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDH-AKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
+++|+++-.+ ++.|..|.+.+.. +++++. ..++ ...++.|||+||+| +++++||||||++++.+++.++.+
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPG--CGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEechH
Confidence 5789998777 8899999887654 555543 2332 24567899999999 999999999999999998888764
Q ss_pred cc
Q 001150 469 SL 470 (1138)
Q Consensus 469 ~~ 470 (1138)
.+
T Consensus 74 ~~ 75 (262)
T 2qz4_A 74 EF 75 (262)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=4.1e-14 Score=153.22 Aligned_cols=124 Identities=15% Similarity=0.300 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc-----------chhhHHHHHHhcC--CCcEEEEeecccCCCccccCC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----------DSYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKSH 708 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~-----------~~~~~lk~~L~~l--~g~VvvIGstt~~d~~d~k~~ 708 (1138)
.+..+|+.+.. ..|.||||||||.+...+. +..+.+-..|+.. +.+++||++||+++..+++
T Consensus 92 ~~~~~~~~a~~---~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~-- 166 (257)
T 1lv7_A 92 RVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA-- 166 (257)
T ss_dssp HHHHHHHHHHT---TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGG--
T ss_pred HHHHHHHHHHH---cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHH--
Confidence 35667777665 7899999999998765221 1222333333332 4689999999999877777
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCC
Q 001150 709 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 788 (1138)
Q Consensus 709 ~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~N 788 (1138)
++|+|| |+..+.|++|+.++|.+||+.++.+ +....+
T Consensus 167 -----l~r~~r----------------------------------f~~~i~i~~P~~~~r~~il~~~~~~----~~l~~~ 203 (257)
T 1lv7_A 167 -----LLRPGR----------------------------------FDRQVVVGLPDVRGREQILKVHMRR----VPLAPD 203 (257)
T ss_dssp -----GGSTTS----------------------------------SCEEEECCCCCHHHHHHHHHHHHTT----SCBCTT
T ss_pred -----HcCCCc----------------------------------CCeEEEeCCCCHHHHHHHHHHHHhc----CCCCcc
Confidence 566666 8789999999999999999877644 333444
Q ss_pred cchhhHhhhcCCCCcccccchhccc
Q 001150 789 LNHLRTVLGRSGLECEGLETLCIRD 813 (1138)
Q Consensus 789 v~~l~~vL~t~glsgaDL~~Lci~a 813 (1138)
+.....+-.+.||+++||..+|..+
T Consensus 204 ~~~~~la~~~~G~~~~dl~~l~~~a 228 (257)
T 1lv7_A 204 IDAAIIARGTPGFSGADLANLVNEA 228 (257)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5444555667899999998877654
No 67
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=1.9e-14 Score=157.65 Aligned_cols=210 Identities=19% Similarity=0.260 Sum_probs=152.2
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
-.++|+++..+ +..+..|.+.+..++++++..+... ...++.|||+||+| +++++||||||++++.+++.++.+
T Consensus 12 ~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ll~G~~G--tGKT~la~~la~~~~~~~~~v~~~ 85 (285)
T 3h4m_A 12 PNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--IEPPKGILLYGPPG--TGKTLLAKAVATETNATFIRVVGS 85 (285)
T ss_dssp CCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--CCCCSEEEEESSSS--SSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEehH
Confidence 36889998887 9999999999999999887653211 24567899999999 999999999999999998888764
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 001150 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1138)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1138)
.+.+.
T Consensus 86 ~~~~~--------------------------------------------------------------------------- 90 (285)
T 3h4m_A 86 ELVKK--------------------------------------------------------------------------- 90 (285)
T ss_dssp GGCCC---------------------------------------------------------------------------
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 44330
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 001150 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1138)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1138)
T Consensus 91 -------------------------------------------------------------------------------- 90 (285)
T 3h4m_A 91 -------------------------------------------------------------------------------- 90 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cchhhHHHHHHh-----cCCCcEEEEe
Q 001150 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLE-----KLPDKVIVIG 695 (1138)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~~~~~lk~~L~-----~l~g~VvvIG 695 (1138)
|.++ ....+..+|+.+.. ..|.||||||||.+.... .+....|...|. ...++++|||
T Consensus 91 ----~~~~--~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 161 (285)
T 3h4m_A 91 ----FIGE--GASLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 161 (285)
T ss_dssp ----STTH--HHHHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEE
T ss_pred ----ccch--HHHHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 0111 23356777887777 789999999999987522 222333333332 2346899999
Q ss_pred ecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 001150 696 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 775 (1138)
Q Consensus 696 stt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~ 775 (1138)
++|.++..+++ ++|+| ||+..+.|++|+.++|.+||+..
T Consensus 162 ttn~~~~l~~~-------l~~~~----------------------------------Rf~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 162 ATNRPDILDPA-------ILRPG----------------------------------RFDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp ECSCGGGBCHH-------HHSTT----------------------------------SEEEEEECCCCCHHHHHHHHHHH
T ss_pred eCCCchhcCHH-------HcCCC----------------------------------cCCeEEEECCCCHHHHHHHHHHH
Confidence 99988654444 33334 48889999999999999999977
Q ss_pred hhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccc
Q 001150 776 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 813 (1138)
Q Consensus 776 L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a 813 (1138)
+.. .....+.+....+..+.|+.+.||+.+|..+
T Consensus 201 ~~~----~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 201 TRK----MNLAEDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp HTT----SCBCTTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred Hhc----CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 643 3334455556666677889998887776643
No 68
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=163.58 Aligned_cols=221 Identities=18% Similarity=0.272 Sum_probs=158.8
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHh
Q 001150 377 EDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAH 456 (1138)
Q Consensus 377 ~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~ 456 (1138)
+.+.+.+++. .-.++|+++-.. +..+..|.+.+..+++++++.. .+....+.|||+||+| +++++||||||+
T Consensus 68 ~~i~~~i~~~-~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppG--tGKT~la~aia~ 139 (357)
T 3d8b_A 68 ELIMNEIMDH-GPPVNWEDIAGV--EFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPG--TGKTLIGKCIAS 139 (357)
T ss_dssp HHHHHHTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTT--SSHHHHHHHHHH
T ss_pred HHHHhhcccC-CCCCCHHHhCCh--HHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCC--CCHHHHHHHHHH
Confidence 3455555543 347899997655 9999999999998999888743 2446778999999999 999999999999
Q ss_pred HhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 001150 457 YFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMET 536 (1138)
Q Consensus 457 ~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1138)
+++++++.++.+.+.+
T Consensus 140 ~~~~~~~~i~~~~l~~---------------------------------------------------------------- 155 (357)
T 3d8b_A 140 QSGATFFSISASSLTS---------------------------------------------------------------- 155 (357)
T ss_dssp HTTCEEEEEEGGGGCC----------------------------------------------------------------
T ss_pred HcCCeEEEEehHHhhc----------------------------------------------------------------
Confidence 9999988887644432
Q ss_pred cccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCC
Q 001150 537 DTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCE 616 (1138)
Q Consensus 537 ~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~ 616 (1138)
T Consensus 156 -------------------------------------------------------------------------------- 155 (357)
T 3d8b_A 156 -------------------------------------------------------------------------------- 155 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC----cch----hhHHHHHHhc--
Q 001150 617 GGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDS----YSTFKSRLEK-- 686 (1138)
Q Consensus 617 ~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~----~~~----~~~lk~~L~~-- 686 (1138)
+|.++ ....++.+|+.+.. ..|.||||||||.+...+ .+. .+.|...|+.
T Consensus 156 ---------------~~~g~--~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 156 ---------------KWVGE--GEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp ---------------SSTTH--HHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred ---------------cccch--HHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 01111 23457778888877 789999999999987532 122 2233333332
Q ss_pred --CCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCC
Q 001150 687 --LPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQ 764 (1138)
Q Consensus 687 --l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd 764 (1138)
...+|+|||+||+++. ++.+|.+||...+.|++|+
T Consensus 216 ~~~~~~v~vI~atn~~~~-------------------------------------------l~~~l~~Rf~~~i~i~~p~ 252 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQE-------------------------------------------IDEAARRRLVKRLYIPLPE 252 (357)
T ss_dssp --CCCCEEEEEEESCGGG-------------------------------------------BCHHHHTTCCEEEECCCCC
T ss_pred ccCCCCEEEEEecCChhh-------------------------------------------CCHHHHhhCceEEEeCCcC
Confidence 2468999999998753 3566788999899999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 765 DEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 765 ~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
.++|..+|+..+.... +.+. +......+..+.||+++||..+|..+..
T Consensus 253 ~~~r~~il~~~~~~~~--~~l~-~~~l~~la~~t~G~s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 253 ASARKQIVINLMSKEQ--CCLS-EEEIEQIVQQSDAFSGADMTQLCREASL 300 (357)
T ss_dssp HHHHHHHHHHHHHTSC--BCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcC--CCcc-HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999997765421 1111 1123334556789999999999987654
No 69
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.57 E-value=3.9e-15 Score=150.45 Aligned_cols=158 Identities=22% Similarity=0.360 Sum_probs=113.3
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEE
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~I 967 (1138)
..|+++.|.++..+.+.+.+.. ....++||+||||+|||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 3577889999988888877642 123579999999999999999999997 7888999
Q ss_pred eccccc--cccccchHHHHHHHHHHHh-ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEE
Q 001150 968 SMSSIT--SKWFGEGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1138)
Q Consensus 968 d~seL~--s~~iG~~E~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLV 1044 (1138)
++..+. ..+.+.....+..++..+. ...+.||||||+|.+...+....... ...++..+ ++ ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~---~~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPA---LA------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHH---HH------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHh---hc------cCCeEE
Confidence 887765 3444555667777777654 34578999999999864431111111 11222222 21 245778
Q ss_pred EEecCCCC-----CCcHHHHhcCCceEEecCCCHHHHHHHH
Q 001150 1045 LAATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1138)
Q Consensus 1045 IaTTN~p~-----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL 1080 (1138)
|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999996 7999999999998875
No 70
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=1.1e-14 Score=166.72 Aligned_cols=226 Identities=19% Similarity=0.270 Sum_probs=142.5
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhh----------------cCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceE
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~----------------~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi 965 (1138)
.++|++.+++.|...+.....+..... ......+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999887753332222100 0112334568999999999999999999999999999
Q ss_pred EEeccccc-cccccch-HHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchH--HHHHHHHHHHHHHhcCCCc-
Q 001150 966 NISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLRT- 1036 (1138)
Q Consensus 966 ~Id~seL~-s~~iG~~-E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~--~al~~il~~LL~~Ldgl~~- 1036 (1138)
.+++..+. ..+.|.. +..+..++..+. ...++||||||||.+...+...... .....+++.|+..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 445566665432 3367999999999996543221100 0111256667777765310
Q ss_pred ----------------cCCCCEEEEEecCC-----------------------------------------CCCCcHHHH
Q 001150 1037 ----------------KDTERILVLAATNR-----------------------------------------PFDLDEAVI 1059 (1138)
Q Consensus 1037 ----------------~~~~~VLVIaTTN~-----------------------------------------p~~Ld~aLl 1059 (1138)
-...++++|+|+|. ...+.++|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01245677777762 123678999
Q ss_pred hcCCceEEecCCCHHHHHHHHHH----HHh-------hCCCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHH
Q 001150 1060 RRLPRRLMVNLPDAPNRAKILQV----ILA-------KEDLS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1060 rRFd~~I~v~lPd~eeR~eIL~~----ll~-------k~~l~---~dvdl~~LA~~te--GySgaDL~~L~~~Aa~~ai~ 1123 (1138)
+||+.++.|+.++.++..+|+.. ++. ..+.. .+..+..|+.... ....++|+++++.++..++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999998862 221 11211 2333666776643 35678999999999888777
Q ss_pred HHHH
Q 001150 1124 EILE 1127 (1138)
Q Consensus 1124 eiie 1127 (1138)
+...
T Consensus 342 ~~~~ 345 (376)
T 1um8_A 342 DLPK 345 (376)
T ss_dssp TGGG
T ss_pred hccC
Confidence 6553
No 71
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.56 E-value=4.4e-14 Score=158.31 Aligned_cols=196 Identities=19% Similarity=0.238 Sum_probs=133.0
Q ss_pred Cccccccc-c--hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc
Q 001150 897 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1138)
Q Consensus 897 ~vsfdDI~-G--le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s 970 (1138)
..+|++++ | .......+...+..+ .....++||+||||||||+||+++++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45788876 3 444455555555421 1123579999999999999999999999 8999999998
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 971 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 971 eL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
++...+.+.........|..... .+.|||||||+.+.+.+ .....+..+++.+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 87655444333222233333332 47899999999884321 11222222222221 1234677777777
Q ss_pred CC---CCcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1051 PF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1051 p~---~Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
+. .+++.+++||. .++.++. +.+++.+|++..+...++. ++..+..|+..+ | ..+++.++++.++..
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 68999999996 5788888 9999999999999876654 344578899988 5 667888888776655
No 72
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=1.6e-13 Score=143.09 Aligned_cols=186 Identities=23% Similarity=0.270 Sum_probs=134.8
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCce-------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 964 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~f------------- 964 (1138)
..+++++|.+...+.|...+.. .+.+..+||+||+|+|||++|+++++.++...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4578899999999999887752 12224799999999999999999999884322
Q ss_pred -----------EEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 965 -----------INISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 965 -----------i~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
+.++... ......+..++..+. ...+.||||||+|.+. ....+.|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHHHHHHHH
Confidence 2221111 112233455555443 2357899999999872 123344555
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.++.. ..++.+|++|+.+..+.+.+.+|+ ..+.++.++.++..++++.++...+.. .+..+..|++.+.| .++
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55442 356888999999999999999997 789999999999999999999876544 34457889999987 777
Q ss_pred HHHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAHR 1120 (1138)
Q Consensus 1109 DL~~L~~~Aa~~ 1120 (1138)
.+.++++.|+..
T Consensus 223 ~~~~~~~~~~~~ 234 (250)
T 1njg_A 223 DALSLTDQAIAS 234 (250)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 899999887643
No 73
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.56 E-value=3.6e-14 Score=158.68 Aligned_cols=184 Identities=18% Similarity=0.183 Sum_probs=130.4
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
.+|++++|.+++++.|.+.+.. .+.++.+|++||||+|||++|+++|++++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 4789999999999999988862 22335688899999999999999999999999999986632
Q ss_pred cchHHHHHHHHHH-Hhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC
Q 001150 978 GEGEKYVKAVFSL-ASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1138)
Q Consensus 978 G~~E~~I~~lF~~-A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 1052 (1138)
...++..+.. +... .+.||||||+|.+.+ .. ..+.|+..++.. ..++.+|+|||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~-------~~~~L~~~le~~----~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AE-------SQRHLRSFMEAY----SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HH-------HHHHHHHHHHHH----GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HH-------HHHHHHHHHHhC----CCCcEEEEEeCCcc
Confidence 2334443333 2221 578999999998831 11 122333333322 24578888999999
Q ss_pred CCcHHHHhcCCceEEecCCCHHHHHHHHHHHH-------hhCCCC-Cc-ccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1053 DLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL-------AKEDLS-PD-VDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1053 ~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll-------~k~~l~-~d-vdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
.+++++++|| .++.|+.|+.++|.+|++.++ ...++. ++ ..+..|+..+.|... ++.++++.++
T Consensus 148 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R-~a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR-KTIGELDSYS 220 (324)
T ss_dssp GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT-HHHHHHHHHG
T ss_pred ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH-HHHHHHHHHh
Confidence 9999999999 689999999998766655443 334444 23 557888888887554 4555555554
No 74
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=4.2e-14 Score=166.20 Aligned_cols=200 Identities=16% Similarity=0.250 Sum_probs=135.3
Q ss_pred Cccccccc-ch--HHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEe
Q 001150 897 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 968 (1138)
Q Consensus 897 ~vsfdDI~-Gl--e~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id 968 (1138)
..+|++++ |. ......+..++.. . .. .+++||+||||+|||+||+++++.+ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~--~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------P--GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------T--TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------C--CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45788876 43 3334444444332 1 11 3679999999999999999999998 88999999
Q ss_pred ccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec
Q 001150 969 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1048 (1138)
Q Consensus 969 ~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT 1048 (1138)
+..+...+.+.........|.......+.|||||||+.+.+.+ .....+..+++.+. .....+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8887554433322222223444444468999999999885321 11222222222221 12345666665
Q ss_pred CCCCC---CcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001150 1049 NRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1049 N~p~~---Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai 1122 (1138)
+.+.. +++.+++||. .++.++.|+.++|.+|++..+...++. ++..+..|+..+.| +.+++.++++.+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 55554 8899999995 688999999999999999998766544 33447889988876 77899999988877653
No 75
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.55 E-value=3.4e-14 Score=167.35 Aligned_cols=183 Identities=25% Similarity=0.395 Sum_probs=133.5
Q ss_pred cccccccchHHHH---HHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 898 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk---~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+|++++|++.+. ..|...+.. .. ..++||+||||||||++|++||+.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 4789999999998 677776652 11 1589999999999999999999999999999986442
Q ss_pred ccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec--
Q 001150 975 KWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1048 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT-- 1048 (1138)
....++.+|..+.. ..+.||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc------CceEEEecCCC
Confidence 23345556655543 36799999999988321 22334444443 235566555
Q ss_pred CCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC-------CCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001150 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~-------~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ 1120 (1138)
|....+++++++|| .++.|..|+.+++..+++.++... .+. .+..++.|+..+.| ..+++.++++.|+..
T Consensus 144 n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 44568999999999 588899999999999999998762 221 33457888888877 566888888888765
Q ss_pred H
Q 001150 1121 P 1121 (1138)
Q Consensus 1121 a 1121 (1138)
+
T Consensus 222 a 222 (447)
T 3pvs_A 222 A 222 (447)
T ss_dssp S
T ss_pred c
Confidence 5
No 76
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.54 E-value=1.8e-14 Score=170.63 Aligned_cols=182 Identities=21% Similarity=0.313 Sum_probs=130.3
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEE
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~I 967 (1138)
-.+++++|.+...+.+.+.+.. +..+++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3578899999999988887752 123589999999999999999999997 7889999
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEe
Q 001150 968 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 968 d~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaT 1047 (1138)
++. ..+.|..+..++.+|..+....+.||||| +. ....+.|+..+. ...+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~----------~~a~~~L~~~L~------~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA----------IDASNILKPSLA------RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT------SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc----------hhHHHHHHHhhc------CCCEEEEec
Confidence 887 56778888889999999998889999999 10 112233332222 357899999
Q ss_pred cCCCC-----CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHcCCCc-----HHHHHH
Q 001150 1048 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYS-----GSDLKN 1112 (1138)
Q Consensus 1048 TN~p~-----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k----~~l~-~dvdl~~LA~~teGyS-----gaDL~~ 1112 (1138)
||..+ .+++++++||. .|.|+.|+.+++.+|++.++.. .++. .+..+..++..+.+|. +.....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99886 78999999995 6999999999999999988765 3333 3445677777666554 346677
Q ss_pred HHHHHHH
Q 001150 1113 LCVTAAH 1119 (1138)
Q Consensus 1113 L~~~Aa~ 1119 (1138)
++..|+.
T Consensus 377 ll~~a~~ 383 (468)
T 3pxg_A 377 LIDEAGS 383 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 77
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.54 E-value=1e-13 Score=152.87 Aligned_cols=222 Identities=18% Similarity=0.260 Sum_probs=158.5
Q ss_pred HHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHH
Q 001150 376 REDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALA 455 (1138)
Q Consensus 376 ~~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA 455 (1138)
.+.+.+.++. +.-.++|+++-.+ +..+..|.+.+..++.++++.. .+...++.|||+||+| +++++||||||
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~G--tGKT~la~~la 75 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPG--NGKTLLARAVA 75 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSS--SCHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCC--CCHHHHHHHHH
Confidence 3455556654 3467899998776 9999999999999998888743 3456688999999999 99999999999
Q ss_pred hHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 001150 456 HYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKME 535 (1138)
Q Consensus 456 ~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1138)
++++++++.++.+.+.+.
T Consensus 76 ~~~~~~~~~i~~~~l~~~-------------------------------------------------------------- 93 (297)
T 3b9p_A 76 TECSATFLNISAASLTSK-------------------------------------------------------------- 93 (297)
T ss_dssp HHTTCEEEEEESTTTSSS--------------------------------------------------------------
T ss_pred HHhCCCeEEeeHHHHhhc--------------------------------------------------------------
Confidence 999988887765333220
Q ss_pred ccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCC
Q 001150 536 TDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQC 615 (1138)
Q Consensus 536 ~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c 615 (1138)
T Consensus 94 -------------------------------------------------------------------------------- 93 (297)
T 3b9p_A 94 -------------------------------------------------------------------------------- 93 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCCc--------chhhHHHHHHhcC
Q 001150 616 EGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL 687 (1138)
Q Consensus 616 ~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~--------~~~~~lk~~L~~l 687 (1138)
|+++ ....++.+|+.+.. ..|.||||||+|.++.... ...+.|...|+..
T Consensus 94 -----------------~~~~--~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 151 (297)
T 3b9p_A 94 -----------------YVGD--GEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGL 151 (297)
T ss_dssp -----------------SCSC--HHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHC
T ss_pred -----------------ccch--HHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcc
Confidence 0011 22356777887777 8899999999999876321 2222333344444
Q ss_pred C-----CcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeC
Q 001150 688 P-----DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHM 762 (1138)
Q Consensus 688 ~-----g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~l 762 (1138)
+ ++|+|||+||+++. ++.++.+||...+.+++
T Consensus 152 ~~~~~~~~v~vi~~tn~~~~-------------------------------------------l~~~l~~R~~~~i~~~~ 188 (297)
T 3b9p_A 152 PGNPDGDRIVVLAATNRPQE-------------------------------------------LDEAALRRFTKRVYVSL 188 (297)
T ss_dssp C------CEEEEEEESCGGG-------------------------------------------BCHHHHHHCCEEEECCC
T ss_pred cccCCCCcEEEEeecCChhh-------------------------------------------CCHHHHhhCCeEEEeCC
Confidence 3 47999999998753 35667789999999999
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 763 PQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 763 Pd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
|+.++|..||+..+.... ..+. +......+..+.|+.++||..+|..+..
T Consensus 189 p~~~~r~~il~~~~~~~~--~~~~-~~~~~~la~~~~g~~~~~l~~l~~~a~~ 238 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQG--SPLD-TEALRRLAKITDGYSGSDLTALAKDAAL 238 (297)
T ss_dssp CCHHHHHHHHHHHHGGGS--CCSC-HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhcC--CCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999998765421 1111 1122233445689999999998876554
No 78
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=2.1e-13 Score=154.13 Aligned_cols=203 Identities=19% Similarity=0.150 Sum_probs=140.0
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEEecc
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 970 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---------g~~fi~Id~s 970 (1138)
.+++.|.+...+.|...+...+. ...+.+++|+||||+|||++|+++++.+ +.+++.+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 36789999999988887643211 1234689999999999999999999998 8899999986
Q ss_pred ccccc----------------cccc-hHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhc
Q 001150 971 SITSK----------------WFGE-GEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1032 (1138)
Q Consensus 971 eL~s~----------------~iG~-~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ld 1032 (1138)
..... ..+. ....+..++...... .+.||||||+|.+...+ ....++..++..+.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchh
Confidence 53211 1121 223345555555433 47899999999884321 02344445554444
Q ss_pred CCCccCCCCEEEEEecCCC---CCCcHHHHhcCCc-eEEecCCCHHHHHHHHHHHHhh--CCC-CCcccHHHHHHHcC--
Q 001150 1033 GLRTKDTERILVLAATNRP---FDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAK--EDL-SPDVDFDAIANMTD-- 1103 (1138)
Q Consensus 1033 gl~~~~~~~VLVIaTTN~p---~~Ld~aLlrRFd~-~I~v~lPd~eeR~eIL~~ll~k--~~l-~~dvdl~~LA~~te-- 1103 (1138)
.... ..++.+|++||.+ +.+++.+.+||.. .+.|+.|+.+++.+|++..+.. .+. ..+..+..++..+.
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 3311 3578899999887 7889999999976 8899999999999999998875 221 23445778888887
Q ss_pred -CCcHHHHHHHHHHHHHHHH
Q 001150 1104 -GYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1104 -GySgaDL~~L~~~Aa~~ai 1122 (1138)
| ..+.+.++|..|+..+.
T Consensus 239 ~G-~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 239 HG-DARRALDLLRVAGEIAE 257 (387)
T ss_dssp SC-CHHHHHHHHHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHHH
Confidence 6 45677788888876553
No 79
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=142.98 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=72.8
Q ss_pred cceeeeC-CeEEEcCCCCcceeecCCCCccceEEEEEEe-------cCCceEEEEEEe-CCCceEEcCeeccCCCeeEcc
Q 001150 138 SNVPICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELR 208 (1138)
Q Consensus 138 ~~~~i~~-~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~-------~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~ 208 (1138)
..+.|.. +.|+|||+..|||+|.+..||..||.|..-. .......||+|+ |+|||||||++|.+++.+.|+
T Consensus 33 ~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~ 112 (130)
T 4h87_A 33 GTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVH 112 (130)
T ss_dssp EEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECCTTCCEECC
T ss_pred eeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECCCCceeECC
Confidence 3566654 6799999999999999999999999996411 111224799998 779999999999999999999
Q ss_pred CCCEEEEeecCCeeEEEE
Q 001150 209 SGDEVVFGSLGNHAYIFQ 226 (1138)
Q Consensus 209 ~gDeI~f~~~~~~ayif~ 226 (1138)
+||+|.|+.+.+ .|||+
T Consensus 113 ~GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 113 VGHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp TTCEEEETTCSE-EEEEE
T ss_pred CCCEEEECCceE-EEEEc
Confidence 999999998776 79986
No 80
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.53 E-value=5.8e-13 Score=140.39 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=127.8
Q ss_pred cccccccc---hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 898 VTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 898 vsfdDI~G---le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
.+|+++.+ .+.+.+.+..++.. .+..++||+||||+|||++|+++++.+ +.+++.+++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 57778775 34666666665542 123689999999999999999999988 48889999887
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCE-EEEEecCC
Q 001150 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI-LVLAATNR 1050 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~V-LVIaTTN~ 1050 (1138)
+....... +.. ...+.||||||++.+.... .....+..+++.+. . ...+ +|++++..
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~---~~~~~l~~~l~~~~-------~--~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAGHP---LWEEAIFDLYNRVA-------E--QKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH---HHHHHHHHHHHHHH-------H--HCSCEEEEEESSC
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccCCH---HHHHHHHHHHHHHH-------H--cCCCeEEEEcCCC
Confidence 65433111 111 1347899999999884210 01222222222221 1 1233 44444444
Q ss_pred CC---CCcHHHHhcCC--ceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001150 1051 PF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1051 p~---~Ld~aLlrRFd--~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai 1122 (1138)
+. .+.+.+.+||. .++.++.|+.+++.++++.++...++. .+..++.|+..+.| +.+++.++++.++..+.
T Consensus 149 ~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 43 45689999985 789999999999999999999876654 34457788888876 77889999998887764
No 81
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=158.17 Aligned_cols=221 Identities=21% Similarity=0.301 Sum_probs=153.4
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHh
Q 001150 377 EDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAH 456 (1138)
Q Consensus 377 ~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~ 456 (1138)
+.+.+.++.+ .-.++|+++-.. +..+..|.+.+..++.++++.. .+....+.|||+||+| +++++||+|+|+
T Consensus 99 ~~~~~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~la~aia~ 170 (389)
T 3vfd_A 99 NLIMNEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPG--NGKTMLAKAVAA 170 (389)
T ss_dssp TTGGGTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTT--SCHHHHHHHHHH
T ss_pred HHHHhhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCC--CCHHHHHHHHHH
Confidence 3444455543 457899998776 9999999999999998888743 3445678999999999 999999999999
Q ss_pred HhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 001150 457 YFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMET 536 (1138)
Q Consensus 457 ~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1138)
+++++++.++.+.+.+.
T Consensus 171 ~~~~~~~~v~~~~l~~~--------------------------------------------------------------- 187 (389)
T 3vfd_A 171 ESNATFFNISAASLTSK--------------------------------------------------------------- 187 (389)
T ss_dssp HTTCEEEEECSCCC------------------------------------------------------------------
T ss_pred hhcCcEEEeeHHHhhcc---------------------------------------------------------------
Confidence 99999988887554430
Q ss_pred cccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCC
Q 001150 537 DTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCE 616 (1138)
Q Consensus 537 ~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~ 616 (1138)
|+|
T Consensus 188 ----------------------~~g------------------------------------------------------- 190 (389)
T 3vfd_A 188 ----------------------YVG------------------------------------------------------- 190 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------ccc-------------------------------------------------------
Confidence 111
Q ss_pred CCcccccccccccccCCCchhhHHHHHHHHHHHHhhcccCCCeEEEEcchhhhhcCC----cchhhHHHHHH----h---
Q 001150 617 GGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL----E--- 685 (1138)
Q Consensus 617 ~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~----~~~~~~lk~~L----~--- 685 (1138)
+ ....+..+|+.+.. .+|.||||||||.++... .+....++..| +
T Consensus 191 -------------------~--~~~~~~~~~~~a~~---~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 191 -------------------E--GEKLVRALFAVARE---LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHH---SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred -------------------h--HHHHHHHHHHHHHh---cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 0 12357788888887 789999999999986522 22222333333 2
Q ss_pred -cCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCC
Q 001150 686 -KLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQ 764 (1138)
Q Consensus 686 -~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd 764 (1138)
..+.+|+|||++|+.+. ++.+|.+||...+.|++|+
T Consensus 247 ~~~~~~v~vI~atn~~~~-------------------------------------------l~~~l~~R~~~~i~i~~p~ 283 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQE-------------------------------------------LDEAVLRRFIKRVYVSLPN 283 (389)
T ss_dssp -----CEEEEEEESCGGG-------------------------------------------CCHHHHTTCCEEEECCCCC
T ss_pred ccCCCCEEEEEecCCchh-------------------------------------------cCHHHHcCcceEEEcCCcC
Confidence 12568999999998652 3567788998899999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 765 DEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 765 ~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
.++|..||+..+... ...+. +......+..+.|+.+.+|..+|..+..
T Consensus 284 ~~~r~~il~~~~~~~--~~~l~-~~~~~~la~~~~g~~~~~l~~L~~~a~~ 331 (389)
T 3vfd_A 284 EETRLLLLKNLLCKQ--GSPLT-QKELAQLARMTDGYSGSDLTALAKDAAL 331 (389)
T ss_dssp HHHHHHHHHHHHTTS--CCCSC-HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc--CCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999776541 11111 1122233445678999999888775544
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.51 E-value=6.6e-14 Score=174.58 Aligned_cols=198 Identities=20% Similarity=0.305 Sum_probs=144.8
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id 968 (1138)
.|++++|.++..+.+.+.+.. +...++||+||||||||++|+++|..+ +..++.++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 578899999998888877642 233689999999999999999999987 66788888
Q ss_pred ccccc--cccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEE
Q 001150 969 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1138)
Q Consensus 969 ~seL~--s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIa 1046 (1138)
+..+. ..+.|..+..++.+|..+....++||||||++.+++......... .+.+.|...+ ....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~---~~~~~L~~~l------~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV---DAANLIKPLL------SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH---HHHHHHSSCS------SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH---HHHHHHHHHH------hCCCeEEEE
Confidence 87775 457788899999999999988899999999999986654321111 1222222222 135678888
Q ss_pred ecCCC-----CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHcCC-----CcHHHHH
Q 001150 1047 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDG-----YSGSDLK 1111 (1138)
Q Consensus 1047 TTN~p-----~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k----~~l~-~dvdl~~LA~~teG-----ySgaDL~ 1111 (1138)
+|+.+ ..+++++.+||. .+.|+.|+.+++.+|++.++.. .++. .+..+..++..+.| +.+..+.
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 88864 367889999996 7999999999999999988754 2332 33346666666554 4556778
Q ss_pred HHHHHHHHH
Q 001150 1112 NLCVTAAHR 1120 (1138)
Q Consensus 1112 ~L~~~Aa~~ 1120 (1138)
.++.+|+..
T Consensus 400 ~lld~a~~~ 408 (758)
T 1r6b_X 400 DVIDEAGAR 408 (758)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777644
No 83
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=3.7e-13 Score=152.87 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=134.9
Q ss_pred ccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CCceEEEec
Q 001150 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 969 (1138)
Q Consensus 901 dDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----------g~~fi~Id~ 969 (1138)
+++.|.++..+.|...+..... ...+..++|+||||+|||++|+++++.+ +.+++.+++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 6788999999988887753211 1233689999999999999999999998 899999997
Q ss_pred cccc-c----------cc-------ccch-HHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHH-HHHHHH
Q 001150 970 SSIT-S----------KW-------FGEG-EKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM-KNEFMV 1029 (1138)
Q Consensus 970 seL~-s----------~~-------iG~~-E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~i-l~~LL~ 1029 (1138)
.... . .+ .+.. ...+..++..+....+ ||||||+|.+..... ..+ +..|+.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~--------~~~~l~~l~~ 160 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG--------GDIVLYQLLR 160 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT--------SHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC--------CceeHHHHhc
Confidence 6543 1 00 1111 2334555555555444 999999998853211 112 333322
Q ss_pred HhcCCCccCCCCEEEEEecCCC---CCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh--C-CCCCcccHHHHHHHcC
Q 001150 1030 NWDGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--E-DLSPDVDFDAIANMTD 1103 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p---~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k--~-~l~~dvdl~~LA~~te 1103 (1138)
.. .++.+|+|||.+ +.+++.+++||...+.|+.++.+++.+|++..+.. . ....+..++.++..+.
T Consensus 161 ~~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 161 SD--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISA 232 (384)
T ss_dssp SS--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHH
T ss_pred CC--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHH
Confidence 21 568899999887 68899999999889999999999999999998864 1 1123444778888877
Q ss_pred ---CCcHHHHHHHHHHHHHHH
Q 001150 1104 ---GYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1104 ---GySgaDL~~L~~~Aa~~a 1121 (1138)
| ..+.+.++|+.|+..+
T Consensus 233 ~~~G-~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 233 KEHG-DARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTCC-CHHHHHHHHHHHHHHT
T ss_pred hccC-CHHHHHHHHHHHHHHh
Confidence 5 3456667777776543
No 84
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1e-13 Score=165.88 Aligned_cols=205 Identities=20% Similarity=0.218 Sum_probs=132.3
Q ss_pred cccccccchHHHHHHHHHHHhcccCc-hhhhhcCCCC--CCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQR-PELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~-~e~f~~~~~~--rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s 974 (1138)
.+|++++|.+..++.|.+++...... +..|...+.. .+.+++||+||||||||++|+++|++++++++.++++++..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 47999999999999999988642211 1122221111 24478999999999999999999999999999999987654
Q ss_pred ccccchH-------HHHHHHHHHH-----hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCE
Q 001150 975 KWFGEGE-------KYVKAVFSLA-----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 1042 (1138)
Q Consensus 975 ~~iG~~E-------~~I~~lF~~A-----~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~V 1042 (1138)
....... ..+..+|..+ ....+.||||||||.+..... .. ++.|+..++. ...++
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----~~----l~~L~~~l~~----~~~~i 182 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----GG----VGQLAQFCRK----TSTPL 182 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----TH----HHHHHHHHHH----CSSCE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----HH----HHHHHHHHHh----cCCCE
Confidence 3211100 0022233332 234679999999999864321 11 2223333332 13456
Q ss_pred EEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1043 LVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1043 LVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
++|+++.....+.+ +.+|+ ..+.|+.|+.+++.+++..++...++. .+..+..|+..+.|.. +.+.++++.++
T Consensus 183 Ili~~~~~~~~l~~-l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gdi-R~~i~~L~~~~ 256 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDI-RQVINLLSTIS 256 (516)
T ss_dssp EEEESCTTSSTTGG-GTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCH-HHHHHHHTHHH
T ss_pred EEEEcCCCCccchh-hHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence 66665554445543 44444 789999999999999999988776543 3445888999887744 44555554443
No 85
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=8.1e-14 Score=176.22 Aligned_cols=199 Identities=22% Similarity=0.323 Sum_probs=132.2
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEE
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~I 967 (1138)
.+|++++|.++..+.+.+.+.. +..+++||+||||||||++|+++|+.+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 3678889999888888776642 223579999999999999999999998 8899999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEE
Q 001150 968 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1138)
Q Consensus 968 d~seL~--s~~iG~~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLV 1044 (1138)
++..+. ..+.|..+..+..+|..+... .+.|||||||+.+.+.....+...+ .+.|...+. ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~----~~~L~~~l~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDA----GNMLKPALA------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHH----HHHHHHHHh------CCCeEE
Confidence 998886 467788888999999999875 6899999999999755433222222 222333332 245778
Q ss_pred EEecCCCC----CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHc-----CCCcHHHH
Q 001150 1045 LAATNRPF----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMT-----DGYSGSDL 1110 (1138)
Q Consensus 1045 IaTTN~p~----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~----~l~-~dvdl~~LA~~t-----eGySgaDL 1110 (1138)
|++||.++ .+++++.+||+ .+.|+.|+.+++.+|++.++... ++. .+..+..++..+ ++|.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 88888663 57899999997 49999999999999999877642 222 333456666654 35667777
Q ss_pred HHHHHHHHHHH
Q 001150 1111 KNLCVTAAHRP 1121 (1138)
Q Consensus 1111 ~~L~~~Aa~~a 1121 (1138)
..++.+|+...
T Consensus 382 i~lldea~a~~ 392 (854)
T 1qvr_A 382 IDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78877776544
No 86
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.50 E-value=6.6e-14 Score=139.78 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=85.9
Q ss_pred cccCCcchhhcccCCCCcceeee-CCeEEEcCCCCcceeecCCC----CccceEEEEEEecCCceEEEEEEe-CCCceEE
Q 001150 121 FETSTPWCRLLSQSGQNSNVPIC-ASIFTVGSSRQCNFPLKDQA----ISAVLCKIKHVQSEGSAVAMVESI-GSKGLQV 194 (1138)
Q Consensus 121 ~~~~~pWgrL~s~~~~~~~~~i~-~~~~tvGr~~~cd~~l~~~~----~s~~hcki~~~~~~~~~~~~led~-s~nGt~V 194 (1138)
+....+|+ |....+....+.+. +..|+|||+..|||.|.+.. ||..||+|..... + .+||+|+ |+|||||
T Consensus 4 ~~~~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~-g--~~~l~Dl~S~NGT~v 79 (138)
T 2pie_A 4 MAGGRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPE-G--QWTIMDNKSLNGVWL 79 (138)
T ss_dssp GGGCEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTT-S--CEEEEECSCSSCEEE
T ss_pred CCCCccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCC-C--cEEEEECCCCCCeEE
Confidence 33456786 56566666788887 68899999999999999998 9999999987432 2 2799999 8899999
Q ss_pred cCeeccCCCeeEccCCCEEEEeec----CCeeEEEEeec
Q 001150 195 NGKNLKKNTSCELRSGDEVVFGSL----GNHAYIFQQLL 229 (1138)
Q Consensus 195 Ng~~~gk~~~~~L~~gDeI~f~~~----~~~ayif~~~~ 229 (1138)
||++|.++..+.|++||+|.|+.+ ....|.|+...
T Consensus 80 Ng~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~~ 118 (138)
T 2pie_A 80 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTE 118 (138)
T ss_dssp TTEECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEEE
T ss_pred CCEEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEecc
Confidence 999999999999999999999985 22456666553
No 87
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.5e-13 Score=150.46 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=127.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEeccccccc----------c------ccchHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITSK----------W------FGEGEKYVKAVF 988 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id~seL~s~----------~------iG~~E~~I~~lF 988 (1138)
++.++||+||||||||++++++++++ .+.++.++|..+.+. + .+.....+..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 34789999999999999999999998 467889998664321 1 233455677888
Q ss_pred HHH--hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc----HHHHhcC
Q 001150 989 SLA--SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD----EAVIRRL 1062 (1138)
Q Consensus 989 ~~A--~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld----~aLlrRF 1062 (1138)
..+ ....+.||||||||.|. .+. ++..|+... .....+++||+++|..+..+ +.+++||
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~-------~q~----~L~~l~~~~----~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~ 188 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL-------SEK----ILQYFEKWI----SSKNSKLSIICVGGHNVTIREQINIMPSLKA 188 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC-------CTH----HHHHHHHHH----HCSSCCEEEEEECCSSCCCHHHHHTCHHHHT
T ss_pred HHhhhccCCceEEEEecHHHhh-------cch----HHHHHHhcc----cccCCcEEEEEEecCcccchhhcchhhhccC
Confidence 875 34568899999999995 122 333333221 12346899999999987544 3456799
Q ss_pred C-ceEEecCCCHHHHHHHHHHHHhhCCC------------------------------------CCcccHHHHHHH---c
Q 001150 1063 P-RRLMVNLPDAPNRAKILQVILAKEDL------------------------------------SPDVDFDAIANM---T 1102 (1138)
Q Consensus 1063 d-~~I~v~lPd~eeR~eIL~~ll~k~~l------------------------------------~~dvdl~~LA~~---t 1102 (1138)
. .+|.|+.++.++..+|++..+....- -.+..++.+|+. .
T Consensus 189 ~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~ 268 (318)
T 3te6_A 189 HFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANV 268 (318)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhh
Confidence 7 57999999999999999998876321 022336666664 4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhh
Q 001150 1103 DGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1138)
Q Consensus 1103 eGySgaDL~~L~~~Aa~~ai~eiie~ek 1130 (1138)
.|-. +-.-++|+.|+..+-++.+++..
T Consensus 269 ~GD~-R~Al~ilr~A~~~ae~e~~~k~~ 295 (318)
T 3te6_A 269 SGST-EKAFKICEAAVEISKKDFVRKGG 295 (318)
T ss_dssp HCSH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 4544 44557899999999888877643
No 88
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.48 E-value=1.1e-13 Score=142.09 Aligned_cols=105 Identities=22% Similarity=0.353 Sum_probs=87.4
Q ss_pred CCcchhhcccCCCCcceeeeCC-------------eEEEcCCCCcceeecCC-CCccceEEEEEEecCCceEEEEEEeCC
Q 001150 124 STPWCRLLSQSGQNSNVPICAS-------------IFTVGSSRQCNFPLKDQ-AISAVLCKIKHVQSEGSAVAMVESIGS 189 (1138)
Q Consensus 124 ~~pWgrL~s~~~~~~~~~i~~~-------------~~tvGr~~~cd~~l~~~-~~s~~hcki~~~~~~~~~~~~led~s~ 189 (1138)
...|++|.-.....+...+.-+ .|+|||+..|||.|.+. .||..||+|..... +. +||+|+|+
T Consensus 30 ~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~-g~--~~l~DlS~ 106 (164)
T 1g3g_A 30 ENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGED-GN--LLLNDIST 106 (164)
T ss_dssp SSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECST-TC--EEEEECCS
T ss_pred CCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCC-CC--EEEEECCC
Confidence 4568999988777666555544 89999999999999997 59999999997432 32 79999999
Q ss_pred CceEEcCeeccCCCeeEccCCCEEEEeecC---CeeEEEEeecch
Q 001150 190 KGLQVNGKNLKKNTSCELRSGDEVVFGSLG---NHAYIFQQLLNE 231 (1138)
Q Consensus 190 nGt~VNg~~~gk~~~~~L~~gDeI~f~~~~---~~ayif~~~~~~ 231 (1138)
|||||||++|.++..+.|++||+|.|+... ...|+|..-...
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~~~ 151 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFINDKF 151 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEECHHH
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCchh
Confidence 999999999999999999999999999973 457888765444
No 89
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.48 E-value=4.5e-13 Score=147.84 Aligned_cols=189 Identities=22% Similarity=0.233 Sum_probs=133.6
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEeccc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 971 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~se 971 (1138)
..+|++++|.+.+++.|...+.. .+. .++||+||||+|||++|+++|+.+ +.+++.+++++
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 45799999999999988876642 122 349999999999999999999997 45678888876
Q ss_pred cccccccchHHHHHHHHHHH-h-ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC
Q 001150 972 ITSKWFGEGEKYVKAVFSLA-S-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A-~-k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN 1049 (1138)
..+ .......+..+.... . ...+.||||||+|.+. ....+.|+..++.. ...+.+|++||
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~le~~----~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTMEMY----SKSCRFILSCN 140 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------HHHHHTTGGGTSSS----SSSEEEEEEES
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------HHHHHHHHHHHHhc----CCCCeEEEEeC
Confidence 432 111112222222111 1 2357899999999883 12334455555442 35688899999
Q ss_pred CCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1050 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1050 ~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
.+..+.+.+.+|| ..+.|..|+.+++.+++..++.+.++. .+..+..|+..+.| ..+.+.++++.++.
T Consensus 141 ~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 141 YVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA 209 (319)
T ss_dssp CGGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred ChhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999999 589999999999999999999877664 34456778877776 44455566665543
No 90
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.48 E-value=1.3e-13 Score=154.70 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=105.7
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc------cc
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------IT 973 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~se------L~ 973 (1138)
+.++.|.+.+++.+...+.. ..++||+||||||||+||+++|+.++.+++.+++.. +.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 34678888888887776642 147999999999999999999999999999988731 22
Q ss_pred cccccchHHHHHHHHHHHhccC---CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 974 SKWFGEGEKYVKAVFSLASKIA---PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 974 s~~iG~~E~~I~~lF~~A~k~~---PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
+...-.... ..| ..... .+|||||||+.+- ......+...+++....+.+.....+.+++||+|+|.
T Consensus 90 g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~-----~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 90 GTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSP-----AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp EEEEEETTT---TEE--EEEECTTCSSEEEEETGGGSC-----HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred CceeecCCC---Cce--EeccCcccccEEEEEccccCC-----HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 111100000 000 00111 3799999999872 2222222222222111122222223457889999985
Q ss_pred CC-----CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhh
Q 001150 1051 PF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1051 p~-----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k 1086 (1138)
.+ .+++++++||+..+.++.|+.+++.+|++..+..
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 43 3899999999888999999999999999988764
No 91
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.48 E-value=8.6e-14 Score=140.72 Aligned_cols=149 Identities=21% Similarity=0.397 Sum_probs=106.5
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEEe
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~Id 968 (1138)
.|++++|.+...+.+.+.+.. ....++||+||||+|||++|+++++.+ +.+++.++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 577888999888888776642 123579999999999999999999997 78888888
Q ss_pred cccccc--ccccchHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCC-CcchHHHHHHHHHHHHHHhcCCCccCCCCEEE
Q 001150 969 MSSITS--KWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1138)
Q Consensus 969 ~seL~s--~~iG~~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~-~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLV 1044 (1138)
+..+.. .+.+..+..+..++..+... .+.||||||+|.+.+.+. ....... .+.+...++ ..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~----~~~l~~~~~------~~~~~i 155 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDA----GNILKPMLA------RGELRC 155 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCT----HHHHHHHHH------TTCSCE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHH----HHHHHHHHh------cCCeeE
Confidence 877642 24455556677777777665 678999999999964432 1111111 122222222 246788
Q ss_pred EEecCCCC-----CCcHHHHhcCCceEEecCCC
Q 001150 1045 LAATNRPF-----DLDEAVIRRLPRRLMVNLPD 1072 (1138)
Q Consensus 1045 IaTTN~p~-----~Ld~aLlrRFd~~I~v~lPd 1072 (1138)
|+++|.+. .+++++++||. .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 88888764 68999999996 58888885
No 92
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=1.6e-13 Score=171.32 Aligned_cols=184 Identities=21% Similarity=0.299 Sum_probs=131.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCceEEE
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----------g~~fi~I 967 (1138)
-.+++++|.++.++.+.+.+.. +...++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 3578899999999998887752 223579999999999999999999997 7888888
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEe
Q 001150 968 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1138)
Q Consensus 968 d~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaT 1047 (1138)
++ ...+.|+.+..++.+|..+....++||||| . . ....+.|+..+. ...+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~----~----------~~~~~~L~~~l~------~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A----A----------IDASNILKPSLA------RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCTT------SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C----c----------hhHHHHHHHHHh------cCCEEEEeC
Confidence 87 456788889999999999999999999999 1 0 112223322222 357899999
Q ss_pred cCCCC-----CCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcC-----CCcHHHHHH
Q 001150 1048 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTD-----GYSGSDLKN 1112 (1138)
Q Consensus 1048 TN~p~-----~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~----~l~-~dvdl~~LA~~te-----GySgaDL~~ 1112 (1138)
||... .+++++++|| ..|.|+.|+.+++.+||+.++... ++. .+..+..++..+. ++.+.....
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99887 7999999999 679999999999999999877652 222 3334566665543 556677777
Q ss_pred HHHHHHHHH
Q 001150 1113 LCVTAAHRP 1121 (1138)
Q Consensus 1113 L~~~Aa~~a 1121 (1138)
++..|+..+
T Consensus 377 ll~~a~~~~ 385 (758)
T 3pxi_A 377 LIDEAGSKV 385 (758)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 93
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.47 E-value=2.6e-13 Score=161.74 Aligned_cols=123 Identities=15% Similarity=0.245 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcccCCCeEEEEcchhhhhcC--------CcchhhHHHHHHhcC-----CCcEEEEeecccCCCccccCCC
Q 001150 643 INTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEKSHP 709 (1138)
Q Consensus 643 i~~L~ev~~~~~~~~p~ILfiddi~~~l~~--------~~~~~~~lk~~L~~l-----~g~VvvIGstt~~d~~d~k~~~ 709 (1138)
+..+|+.+.. ..|.||||||||.+... +.+....+...|..+ ...++||+++|+++..||+
T Consensus 112 v~~lfq~a~~---~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a--- 185 (499)
T 2dhr_A 112 VRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA--- 185 (499)
T ss_dssp HHHHTTTSSS---SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT---
T ss_pred HHHHHHHHHh---cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc---
Confidence 4445544433 67999999999986542 122223333333222 3468999999999877777
Q ss_pred CCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCc
Q 001150 710 GGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNL 789 (1138)
Q Consensus 710 ~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv 789 (1138)
|+|+|| |+..|.|++|+.++|.+||+.++.. +.+..++
T Consensus 186 ----Llr~gR----------------------------------fdr~i~i~~Pd~~~R~~IL~~~~~~----~~l~~dv 223 (499)
T 2dhr_A 186 ----LLRPGR----------------------------------FDRQIAIDAPDVKGREQILRIHARG----KPLAEDV 223 (499)
T ss_dssp ----TSSTTS----------------------------------SCCEEECCCCCHHHHHHHHHHTTSS----SCCCCSS
T ss_pred ----cccccc----------------------------------cceEEecCCCCHHHHHHHHHHHHhc----CCCChHH
Confidence 777887 8889999999999999999977643 3445566
Q ss_pred chhhHhhhcCCCCcccccchhccc
Q 001150 790 NHLRTVLGRSGLECEGLETLCIRD 813 (1138)
Q Consensus 790 ~~l~~vL~t~glsgaDL~~Lci~a 813 (1138)
+....+..+.|+.|+||+.+|..+
T Consensus 224 ~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 224 DLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp TTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Confidence 666667788899999998887654
No 94
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=7.7e-13 Score=148.51 Aligned_cols=186 Identities=19% Similarity=0.224 Sum_probs=130.6
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CceEEEeccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMSS 971 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg------~~fi~Id~se 971 (1138)
.+|++++|.+++++.|...+.. .++ .++||+||||+|||++|+++|+.++ ..++.+++++
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKS-------------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTC-------------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCHHHhhCCHHHHHHHHHHHhc-------------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 4689999999999988887642 112 3599999999999999999999864 4678888766
Q ss_pred cccccccchHHHHHHHHHHH-h---------------ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC
Q 001150 972 ITSKWFGEGEKYVKAVFSLA-S---------------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1138)
Q Consensus 972 L~s~~iG~~E~~I~~lF~~A-~---------------k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~ 1035 (1138)
..+ ...++..+... . ...+.||||||+|.+. . ...+.|+..++..
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----~-------~~~~~Ll~~le~~- 160 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----A-------DAQSALRRTMETY- 160 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----H-------HHHHHHHHHHHHT-
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----H-------HHHHHHHHHHHhc-
Confidence 421 11122211111 1 1245799999999883 1 1223344444332
Q ss_pred ccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 001150 1036 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 1114 (1138)
Q Consensus 1036 ~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~ 1114 (1138)
.....+|.+||.+..+.+.+++|| ..+.|..|+.++...+++..+...++. ++..+..|+..+.|. .+.+.+++
T Consensus 161 ---~~~~~~il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l 235 (353)
T 1sxj_D 161 ---SGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLL 235 (353)
T ss_dssp ---TTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHH
T ss_pred ---CCCceEEEEeCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHH
Confidence 234667778899999999999999 489999999999999999998776654 445578899999885 45566666
Q ss_pred HHHHHHH
Q 001150 1115 VTAAHRP 1121 (1138)
Q Consensus 1115 ~~Aa~~a 1121 (1138)
+.++..+
T Consensus 236 ~~~~~~~ 242 (353)
T 1sxj_D 236 QSASKGA 242 (353)
T ss_dssp HHTHHHH
T ss_pred HHHHHhc
Confidence 6665543
No 95
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.46 E-value=1.3e-13 Score=136.82 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=85.2
Q ss_pred CCcccCCcchhhcccCCCC---cceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEE
Q 001150 119 PTFETSTPWCRLLSQSGQN---SNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQV 194 (1138)
Q Consensus 119 ~~~~~~~pWgrL~s~~~~~---~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~V 194 (1138)
...+..+|||+|.-..... ..+.|....++|||...|||.|.+..||..||+|.....++. +||+|+ |+|||||
T Consensus 16 ~~~~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT~v 93 (132)
T 3va4_A 16 PRGSHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGTQI 93 (132)
T ss_dssp ----CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCEEE
T ss_pred CccccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCeEE
Confidence 4455668999999775544 778899999999999999999999999999999997644443 589999 7799999
Q ss_pred cCee--ccCCCeeEccCCCEEEEeecCCeeEEEEee
Q 001150 195 NGKN--LKKNTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1138)
Q Consensus 195 Ng~~--~gk~~~~~L~~gDeI~f~~~~~~ayif~~~ 228 (1138)
||++ +.++..+.|+.||+|.|+.. .+.|..+
T Consensus 94 Ng~~i~l~~~~~~~L~~GD~I~lG~~---~l~f~~~ 126 (132)
T 3va4_A 94 VKPPRVLPPGVSHRLRDQELILFADF---PCQYHRL 126 (132)
T ss_dssp TTTTEEECTTCCEECCTTCEEEETTE---EEEEEEC
T ss_pred CCEEcccCCCCEEECCCCCEEEECCE---EEEEEEC
Confidence 9999 68889999999999999644 4556543
No 96
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.46 E-value=3.5e-13 Score=151.32 Aligned_cols=197 Identities=16% Similarity=0.207 Sum_probs=117.9
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------ce-----
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NF----- 964 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-------~f----- 964 (1138)
..+|++++|.+.+++.+...+.. ....++||+||||||||++|+++|+.++. +|
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46799999999987765444331 01246999999999999999999999862 21
Q ss_pred ---------------------EEEeccccccccccchHHHHHHHHHHHh---------ccCCeEEEEcCCcccccCCCCc
Q 001150 965 ---------------------INISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVIFVDEVDSMLGRRENP 1014 (1138)
Q Consensus 965 ---------------------i~Id~seL~s~~iG~~E~~I~~lF~~A~---------k~~PsIIfIDEID~L~~~r~~~ 1014 (1138)
+.+........++|.. .+...+.... ...++|||||||+.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-----~ 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-----D 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----H
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----H
Confidence 1111110001111110 0111222211 1136899999999883 1
Q ss_pred chHHHHHHHHHHHHHHhcCC---------CccCCCCEEEEEecCCCC-CCcHHHHhcCCceEEecCC-CHHHHHHHHHHH
Q 001150 1015 GEHEAMRKMKNEFMVNWDGL---------RTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLP-DAPNRAKILQVI 1083 (1138)
Q Consensus 1015 ~~~~al~~il~~LL~~Ldgl---------~~~~~~~VLVIaTTN~p~-~Ld~aLlrRFd~~I~v~lP-d~eeR~eIL~~l 1083 (1138)
...+.|+..++.. ......++++|+|+|... .+++++++||+..+.++.| +.+++.+|++..
T Consensus 159 -------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 159 -------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp -------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 1222333333221 111124789999999744 8999999999888999998 677777888663
Q ss_pred Hhh-----------------------------CCC-CCcccHHHHHHHcCC---CcHHHHHHHHHHHHHHH
Q 001150 1084 LAK-----------------------------EDL-SPDVDFDAIANMTDG---YSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1084 l~k-----------------------------~~l-~~dvdl~~LA~~teG---ySgaDL~~L~~~Aa~~a 1121 (1138)
+.. ..+ -++..+..|+....+ .+.+.+.++++.|...|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A 302 (350)
T 1g8p_A 232 DTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALA 302 (350)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHH
T ss_pred HhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 210 111 123335556555443 25688888888776655
No 97
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.45 E-value=1.3e-13 Score=143.84 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=80.6
Q ss_pred cchhhcccCCC--CcceeeeCCe--EEEcCCCCcceeecCCCCccceEEEEEEec-CCc----------eEEEEEEeCCC
Q 001150 126 PWCRLLSQSGQ--NSNVPICASI--FTVGSSRQCNFPLKDQAISAVLCKIKHVQS-EGS----------AVAMVESIGSK 190 (1138)
Q Consensus 126 pWgrL~s~~~~--~~~~~i~~~~--~tvGr~~~cd~~l~~~~~s~~hcki~~~~~-~~~----------~~~~led~s~n 190 (1138)
.|..|.+.... ...+.|.... |+|||+..|||+|.+..||..||+|..... .|. ..+||+|+|+|
T Consensus 28 ~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStN 107 (182)
T 1qu5_A 28 RFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTN 107 (182)
T ss_dssp CCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSS
T ss_pred cEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcC
Confidence 44445454332 3567888766 999999999999999999999999998641 111 46899999999
Q ss_pred ceEEcCeeccCCCeeEccCCCEEEEeec--CCeeEEEEe
Q 001150 191 GLQVNGKNLKKNTSCELRSGDEVVFGSL--GNHAYIFQQ 227 (1138)
Q Consensus 191 Gt~VNg~~~gk~~~~~L~~gDeI~f~~~--~~~ayif~~ 227 (1138)
||||||++|.++..+.|++||+|.|... |...+.|..
T Consensus 108 GT~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 108 VSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp CCEETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred CeEECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 9999999999999999999999999443 445556653
No 98
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=1.9e-12 Score=146.39 Aligned_cols=185 Identities=23% Similarity=0.271 Sum_probs=134.7
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc--------------
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~-------------- 963 (1138)
.+|++++|.+.+.+.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4688999999999999888752 1223568999999999999999999998542
Q ss_pred ----------eEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 964 ----------fi~Id~seL~s~~iG~~E~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
++.++... ......++.++..+.. ..+.||||||+|.+. ....+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~Ll~ 141 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (373)
T ss_dssp HHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHHHHHHHH
Confidence 23333221 0112235666666543 246899999999872 123344555
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySga 1108 (1138)
.++.. ...+++|++|+.+..+.+.+++|+ ..+.+..|+.++..++++.++...++. .+..+..|+..+.| +.+
T Consensus 142 ~le~~----~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHSC----CSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 55442 356888888888889999999998 789999999999999999998877655 33447788888877 566
Q ss_pred HHHHHHHHHHH
Q 001150 1109 DLKNLCVTAAH 1119 (1138)
Q Consensus 1109 DL~~L~~~Aa~ 1119 (1138)
++.++++.+..
T Consensus 216 ~~~~~l~~~~~ 226 (373)
T 1jr3_A 216 DALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888877653
No 99
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=2.2e-12 Score=142.84 Aligned_cols=188 Identities=24% Similarity=0.286 Sum_probs=130.3
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CceEEEecccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-----~~fi~Id~seL 972 (1138)
.+|++++|.+.+++.|...+.. + +. .++||+||||+|||++|+++|+.+. ..++.+++++.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 5688999999999999887752 1 12 3599999999999999999999973 34777776653
Q ss_pred ccccccchHHHHHHHHHHH--hccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 973 TSKWFGEGEKYVKAVFSLA--SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A--~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
.+. ......+....... ....+.||||||+|.+. . ...+.|+..++.. ...+.+|+++|.
T Consensus 88 ~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~-------~~~~~L~~~le~~----~~~~~~i~~~~~ 149 (327)
T 1iqp_A 88 RGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----Q-------DAQQALRRTMEMF----SSNVRFILSCNY 149 (327)
T ss_dssp HHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----H-------HHHHHHHHHHHHT----TTTEEEEEEESC
T ss_pred Cch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----H-------HHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 221 11111121111100 11357899999999882 1 1223344444332 246788889999
Q ss_pred CCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
+..+.+.+.+||. .+.|+.++.++..++++.++...++. ++..+..|+..+.| +.+.+.++++.++.
T Consensus 150 ~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 150 SSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp GGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred ccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 9999999999994 89999999999999999998876654 34457788888877 45566666666553
No 100
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=2.2e-12 Score=142.60 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=131.8
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCceEEEecccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 972 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL 972 (1138)
.+|++++|.+...+.|...+.. .+. .++||+||+|+|||++|+++|+.+ +.+++.+++++.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-------------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-------------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-------------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 4688999999999999888752 122 249999999999999999999997 456788877653
Q ss_pred ccccccchHHHHHHHHHHHh-------ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEE
Q 001150 973 TSKWFGEGEKYVKAVFSLAS-------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~-------k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVI 1045 (1138)
.+ ...++.++.... ...+.||||||+|.+.. ...+.|+..++.. ...+.+|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~----~~~~~~i 141 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMELY----SNSTRFA 141 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHHT----TTTEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhcc----CCCceEE
Confidence 21 233444444433 22478999999998831 1123334344332 2467788
Q ss_pred EecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001150 1046 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1138)
Q Consensus 1046 aTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa 1118 (1138)
++||.+..+.+.+.+|+ ..+.|+.|+.+++.++++.++...++. .+..+..|+..+.|..+ .+.++++.++
T Consensus 142 l~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r-~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMR-QAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred EEeCChhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 88899999999999999 589999999999999999988776654 34457888888887544 4555555554
No 101
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.43 E-value=4.4e-14 Score=153.53 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=56.8
Q ss_pred cCCccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeE
Q 001150 384 LDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 462 (1138)
Q Consensus 384 v~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~l 462 (1138)
++.+...++|+++-.+ +..+..|.+.+- .+++++.. +++ ...++.|||+||+| +++++||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPERYANLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHHHHHHS---CCCCSCCCCBCSSC--SSHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHHHHHCC---CCCCceEEEECCCC--CcHHHHHHHHHHHhCCCE
Confidence 4567778999998777 888888888654 36665542 222 23456799999999 999999999999998776
Q ss_pred EEeec
Q 001150 463 LIFDS 467 (1138)
Q Consensus 463 l~~d~ 467 (1138)
+.++.
T Consensus 73 ~~v~~ 77 (268)
T 2r62_A 73 FSMGG 77 (268)
T ss_dssp CCCCS
T ss_pred EEech
Confidence 55544
No 102
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=3.5e-12 Score=143.82 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=136.9
Q ss_pred ccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCceEEEecccc
Q 001150 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSI 972 (1138)
Q Consensus 899 sfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el------g~~fi~Id~seL 972 (1138)
..++++|.+...+.|.+.+...+. ...+..++|+||+|+|||+|++++++.+ +.+++.+++...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 346889999999888876653111 1233579999999999999999999998 889999987542
Q ss_pred cc------c----------cccc-hHHHHHHHHHHHhccC-CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001150 973 TS------K----------WFGE-GEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1034 (1138)
Q Consensus 973 ~s------~----------~iG~-~E~~I~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl 1034 (1138)
.. . ..+. .......++....... |.||||||++.+..... ..++..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhc
Confidence 11 0 0111 2233455555554443 89999999998864321 12344444445443
Q ss_pred CccCCCCEEEEEecCCC---CCCcHHHHhcCCc-eEEecCCCHHHHHHHHHHHHhhCC---CCCcccHHHHHHHcC---C
Q 001150 1035 RTKDTERILVLAATNRP---FDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAKED---LSPDVDFDAIANMTD---G 1104 (1138)
Q Consensus 1035 ~~~~~~~VLVIaTTN~p---~~Ld~aLlrRFd~-~I~v~lPd~eeR~eIL~~ll~k~~---l~~dvdl~~LA~~te---G 1104 (1138)
...++.+|++|+.+ ..+++.+.+||.. .+.++.++.++..++++..+.... ...+..+..++..+. |
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 23578889999876 4678889999864 899999999999999998876421 123344677777776 6
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 001150 1105 YSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1105 ySgaDL~~L~~~Aa~~ai 1122 (1138)
..+.+.++|..|+..+.
T Consensus 237 -~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 237 -DARRALDLLRVSGEIAE 253 (386)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 44566678887776543
No 103
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.42 E-value=8.8e-12 Score=141.01 Aligned_cols=194 Identities=21% Similarity=0.239 Sum_probs=134.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~i 977 (1138)
.+|+++.|.+.+++.+...+..... . ..++.+++|+||||+|||+||+++|+.++.++...++..+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 3688889988888887766642110 0 123467999999999999999999999999887766544321
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------cc-------CCCCEE
Q 001150 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK-------DTERIL 1043 (1138)
Q Consensus 978 G~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~-------~~~~VL 1043 (1138)
...+..++.. .....|+||||++.+.. .. .+.++..+.... .. .-.++.
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~-------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----AV-------EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HH-------HHHHHHHHHTSCCCC---------------CCCE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HH-------HHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1223333322 22468999999998841 11 111222221110 00 013467
Q ss_pred EEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
++++|+.+..|++.+++||...+.++.++.+++.++++......++. ++..+..||..+.| +++.+.++++.+...|
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 78899999999999999998889999999999999999988776654 34457888888888 4567888887765544
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=8.2e-12 Score=141.60 Aligned_cols=200 Identities=15% Similarity=0.089 Sum_probs=137.1
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCc--eEEEECCCCCCHHHHHHHHHHHh----CCceEEEeccccc
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 973 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~--gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL~ 973 (1138)
.+++.|.+...+.|...+..... + .++. .++|+||||+|||+++++++..+ +..++.+++....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 36789999999888887753211 1 1123 79999999999999999999999 6788999875532
Q ss_pred cc---------c-------ccc-hHHHHHHHHHHHhc-cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC
Q 001150 974 SK---------W-------FGE-GEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1138)
Q Consensus 974 s~---------~-------iG~-~E~~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~ 1035 (1138)
.. . .+. .......+...... ..|.||||||++.+ . ...+..|+..+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~-------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A-------PDILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C-------HHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c-------hHHHHHHHHHHHhCC
Confidence 10 0 011 12222333333322 35889999999977 1 233444555554432
Q ss_pred ccCCCCEEEEEecCCC---CCCcHHHHhcCCc-eEEecCCCHHHHHHHHHHHHhh---CCCCCcccHHHHHHHc------
Q 001150 1036 TKDTERILVLAATNRP---FDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAK---EDLSPDVDFDAIANMT------ 1102 (1138)
Q Consensus 1036 ~~~~~~VLVIaTTN~p---~~Ld~aLlrRFd~-~I~v~lPd~eeR~eIL~~ll~k---~~l~~dvdl~~LA~~t------ 1102 (1138)
.....++.+|++||.+ ..+++.+.+||.. .+.|+.++.++..++++..+.. .....+..+..++..+
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1111478889999887 6788999999975 8999999999999999998865 2223445578888888
Q ss_pred ---CCCcHHHHHHHHHHHHHHHH
Q 001150 1103 ---DGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1103 ---eGySgaDL~~L~~~Aa~~ai 1122 (1138)
.| ..+.+.++|..|+..+.
T Consensus 234 ~~~~G-~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 234 DTNRG-DARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHHH
T ss_pred CCCCC-cHHHHHHHHHHHHHHHH
Confidence 45 55678888888876553
No 105
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.40 E-value=4.6e-13 Score=130.01 Aligned_cols=91 Identities=27% Similarity=0.398 Sum_probs=75.0
Q ss_pred CcchhhcccCCC--CcceeeeC-CeEEEcCC-CCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeec
Q 001150 125 TPWCRLLSQSGQ--NSNVPICA-SIFTVGSS-RQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNL 199 (1138)
Q Consensus 125 ~pWgrL~s~~~~--~~~~~i~~-~~~tvGr~-~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~ 199 (1138)
.||.+|.-.... ...+.|.. ..|+|||. ..|||.|.+..||..||+|.... +. +||+|+ |+|||||||+++
T Consensus 10 ~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~--~~--~~l~Dl~S~nGT~vng~~l 85 (118)
T 1uht_A 10 TPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS--GN--WVIQDLGSSNGTLLNSNAL 85 (118)
T ss_dssp SCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS--SS--EEEECCCCSSCCEESSSBC
T ss_pred CCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC--CE--EEEEECCCCCCeEECCEEC
Confidence 456666554322 24666765 68999999 89999999999999999999643 22 799999 789999999999
Q ss_pred cCCCeeEccCCCEEEEeecC
Q 001150 200 KKNTSCELRSGDEVVFGSLG 219 (1138)
Q Consensus 200 gk~~~~~L~~gDeI~f~~~~ 219 (1138)
.++..+.|++||+|.|+...
T Consensus 86 ~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 86 DPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp CTTCEEECCTTEEEEETTTE
T ss_pred CCCCeEEcCCCCEEEECCeE
Confidence 99999999999999997654
No 106
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.40 E-value=4.9e-13 Score=136.52 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=73.8
Q ss_pred cceeeeCCe--EEEcCCCCcceeecCCCCccceEEEEEEec-CCc----------eEEEEEEeCCCceEEcCeeccCCCe
Q 001150 138 SNVPICASI--FTVGSSRQCNFPLKDQAISAVLCKIKHVQS-EGS----------AVAMVESIGSKGLQVNGKNLKKNTS 204 (1138)
Q Consensus 138 ~~~~i~~~~--~tvGr~~~cd~~l~~~~~s~~hcki~~~~~-~~~----------~~~~led~s~nGt~VNg~~~gk~~~ 204 (1138)
..+.|.... |+|||+..||+.|.+..||..||+|..... .+. ..+||+|+|+|||||||++|.++..
T Consensus 18 ~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~ri~~~~~ 97 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNNRMIQGTK 97 (158)
T ss_dssp CCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCCEETTEECCSSEE
T ss_pred eEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCeEECCEEcCCCce
Confidence 567777766 999999999999999999999999998641 121 4689999999999999999999999
Q ss_pred eEccCCCEEEEeec--CCeeEEEE
Q 001150 205 CELRSGDEVVFGSL--GNHAYIFQ 226 (1138)
Q Consensus 205 ~~L~~gDeI~f~~~--~~~ayif~ 226 (1138)
+.|++||+|.|... |...+.|+
T Consensus 98 ~~L~~GD~I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 98 FLLQDGDEIKIIWDKNNKFVIGFK 121 (158)
T ss_dssp EECCSSCCEESCCCTTTTCCCCEE
T ss_pred EEcCCCCEEEEeecCCCCEEEEEE
Confidence 99999999999332 33344454
No 107
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=4.5e-12 Score=142.88 Aligned_cols=188 Identities=14% Similarity=0.186 Sum_probs=126.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------------
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 962 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~-------------- 962 (1138)
..+|++++|.+.+.+.|+..+.. . .+.+ ++||+||+|+|||++++++|+++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ---------P---RDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC---------T---TCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh---------C---CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 35799999999999888776521 1 1222 3999999999999999999997511
Q ss_pred ---------------ceEEEeccccccccccchHHHHHHHHHHHh--------------ccCCeEEEEcCCcccccCCCC
Q 001150 963 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 963 ---------------~fi~Id~seL~s~~iG~~E~~I~~lF~~A~--------------k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
+++.++..... ......++..+..+. ...|.||+|||++.+ .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~ 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----T 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----C
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----C
Confidence 12222221110 000112444444432 225779999999986 1
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-C-
Q 001150 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-P- 1091 (1138)
Q Consensus 1014 ~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~- 1091 (1138)
. . ..+.|+..+... .....+|.+|+.+..+.+.+++|| .++.|+.|+.+++.++++.++.+.++. +
T Consensus 148 ~---~----~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 K---D----AQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp H---H----HHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred H---H----HHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 1 1 223333334332 235778888999999999999999 889999999999999999999877764 3
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1092 DVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1092 dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
+..+..|+..+.| +.+++.++++.++.
T Consensus 216 ~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 216 KDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp SHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 4557888888877 44566666666554
No 108
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.2e-12 Score=133.76 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=78.8
Q ss_pred CCcceeeeC-CeEEEcCCC---------------CcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCee
Q 001150 136 QNSNVPICA-SIFTVGSSR---------------QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKN 198 (1138)
Q Consensus 136 ~~~~~~i~~-~~~tvGr~~---------------~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~ 198 (1138)
....+.|.. +.|+|||.. .|||.|.+..||..||+|.....++....||+|+ |+|||||||++
T Consensus 46 ~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~r 125 (158)
T 3els_A 46 PWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVV 125 (158)
T ss_dssp CSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEE
T ss_pred cceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEE
Confidence 345677775 689999994 5999999999999999999876666667899999 88999999999
Q ss_pred ccCCCeeEccCCCEEEEeecC---CeeEEEEe
Q 001150 199 LKKNTSCELRSGDEVVFGSLG---NHAYIFQQ 227 (1138)
Q Consensus 199 ~gk~~~~~L~~gDeI~f~~~~---~~ayif~~ 227 (1138)
|.++..+.|++||+|.|+.+. ..-|+|.+
T Consensus 126 i~~~~~~~L~~GD~I~~G~s~~~~~~elvF~~ 157 (158)
T 3els_A 126 IPGARYIELRSGDVLTLSEFEEDNDYELIFMN 157 (158)
T ss_dssp CCTTCCEECCTTEEEESSSCGGGCCEEEEEEE
T ss_pred cCCCceEEcCCCCEEEECCCCCCCCEEEEEEe
Confidence 999999999999999999766 35666654
No 109
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.38 E-value=1.7e-12 Score=141.14 Aligned_cols=196 Identities=18% Similarity=0.178 Sum_probs=113.4
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEecccccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 974 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~seL~s 974 (1138)
.+|++++|.....+.+.+.+.... ....++||+||||||||++|+++++.+. .+|+.++++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 468888898888887777665311 1125799999999999999999999884 7899999987632
Q ss_pred c-----cccchHHHH-------HHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------
Q 001150 975 K-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------- 1035 (1138)
Q Consensus 975 ~-----~iG~~E~~I-------~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~------- 1035 (1138)
. .+|...... ...|..+ ..++||||||+.+. . .+...|+..++...
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----~-------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----M-------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----H-------HHHHHHHHHHHHCEECCCCC-
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----H-------HHHHHHHHHHHhCCeecCCCc
Confidence 1 112111100 1122222 35899999999883 1 22233343333211
Q ss_pred ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHH----HHHHHHHHhh----CCCCC--ccc---H
Q 001150 1036 TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAK----EDLSP--DVD---F 1095 (1138)
Q Consensus 1036 ~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR----~eIL~~ll~k----~~l~~--dvd---l 1095 (1138)
.....++.+|+|||.. ..+.+.+.+||.. +.+..|+..+| ..+++.++.. .+... .++ +
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 0112467899999874 2578999999953 55666665544 4444444432 33311 233 3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001150 1096 DAIANMTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1096 ~~LA~~teGySgaDL~~L~~~Aa~~a 1121 (1138)
..|....-..+.++|+++++.++..+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 44444332335678999888877544
No 110
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.37 E-value=6.6e-13 Score=133.69 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=79.7
Q ss_pred CCcchhhcccCCCCcceeee-CCeEEEcCCCCcceeecCCC----CccceEEEEEEecCCceEEEEEEe-CCCceEEcCe
Q 001150 124 STPWCRLLSQSGQNSNVPIC-ASIFTVGSSRQCNFPLKDQA----ISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGK 197 (1138)
Q Consensus 124 ~~pWgrL~s~~~~~~~~~i~-~~~~tvGr~~~cd~~l~~~~----~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~ 197 (1138)
...|+-+ ...+....+.+. +..|+|||...|||.|.+.. ||..||+|.....+ .+||+|+ |+|||||||+
T Consensus 15 ~~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g---~~~l~Dl~S~NGT~vNg~ 90 (145)
T 2csw_A 15 GRSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEG---QWTIMDNKSLNGVWLNRA 90 (145)
T ss_dssp SEEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTTS---CEEEEBSSCSSCEEESSC
T ss_pred CccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCCC---eEEEEECCCCCCeEECCE
Confidence 3567744 444444566674 47899999999999999998 99999999874322 2799997 7899999999
Q ss_pred eccCCCeeEccCCCEEEEeec----CCeeEEEEee
Q 001150 198 NLKKNTSCELRSGDEVVFGSL----GNHAYIFQQL 228 (1138)
Q Consensus 198 ~~gk~~~~~L~~gDeI~f~~~----~~~ayif~~~ 228 (1138)
+|.++..+.|++||+|.|+.+ ....|.|+..
T Consensus 91 ~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~~ 125 (145)
T 2csw_A 91 RLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 125 (145)
T ss_dssp BCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCEE
T ss_pred ECCCCccEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 999999999999999999985 2234555543
No 111
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.36 E-value=7.6e-13 Score=131.12 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=71.7
Q ss_pred CcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEec-CCceEEEEEEe------CCCceEEcCeeccCCCeeEccC
Q 001150 137 NSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQS-EGSAVAMVESI------GSKGLQVNGKNLKKNTSCELRS 209 (1138)
Q Consensus 137 ~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~-~~~~~~~led~------s~nGt~VNg~~~gk~~~~~L~~ 209 (1138)
...+.|....|+|||+..|||+|.+..||..||+|.+... +|....+|+|+ |+|||||||++|.+ +.|+.
T Consensus 22 ~~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vNg~~i~~---~~L~~ 98 (131)
T 3hx1_A 22 RREVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMINGKKVQE---HIIQT 98 (131)
T ss_dssp EEEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETTEEESE---EECCT
T ss_pred cEEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEECCEEeEe---EECCC
Confidence 3578888899999999999999999999999999987632 33334799999 99999999999986 99999
Q ss_pred CCEEEEeecCCeeEEEEeecc
Q 001150 210 GDEVVFGSLGNHAYIFQQLLN 230 (1138)
Q Consensus 210 gDeI~f~~~~~~ayif~~~~~ 230 (1138)
||+|.|+.. .++|.++.+
T Consensus 99 GD~I~iG~~---~~~~~~~~~ 116 (131)
T 3hx1_A 99 GDEIVMGPQ---VSVRYEYRR 116 (131)
T ss_dssp TCEEECSTT---CEEEEEEEC
T ss_pred CCEEEECCE---EEEEEEEec
Confidence 999999765 455555543
No 112
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.36 E-value=1.5e-12 Score=144.90 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhc-ccCCCeEEEEcchhhhhcCCc----------chhhHHHHHHhc-------------CCCcEEEEeec
Q 001150 642 LINTLFEVVFSE-SRSCPFILFMKDAEKSIAGNS----------DSYSTFKSRLEK-------------LPDKVIVIGSH 697 (1138)
Q Consensus 642 ~i~~L~ev~~~~-~~~~p~ILfiddi~~~l~~~~----------~~~~~lk~~L~~-------------l~g~VvvIGst 697 (1138)
.+..+|+.+... .+..|.||||||||++..... ...+.|...|+. -..+|+||++|
T Consensus 83 ~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~tt 162 (293)
T 3t15_A 83 LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTG 162 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEec
Confidence 355566555322 237899999999999776222 233455555541 23579999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 698 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 698 t~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
|+.+..+++ |+|+|| |+..|. +|+.++|.+||+.++.
T Consensus 163 N~~~~ld~a-------l~R~~R----------------------------------~d~~i~--~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 163 NDFSTLYAP-------LIRDGR----------------------------------MEKFYW--APTREDRIGVCTGIFR 199 (293)
T ss_dssp SSCCC--CH-------HHHHHH----------------------------------EEEEEE--CCCHHHHHHHHHHHHG
T ss_pred CCcccCCHH-------HhCCCC----------------------------------CceeEe--CcCHHHHHHHHHHhcc
Confidence 999877777 666666 655554 7999999999996653
Q ss_pred hhhhhhhhcCCcchhhHhhhcCCCCcccccch
Q 001150 778 RDSETLKMKGNLNHLRTVLGRSGLECEGLETL 809 (1138)
Q Consensus 778 ~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~L 809 (1138)
. .++.....+-.+.+|.+++|..+
T Consensus 200 ~--------~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 200 T--------DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp G--------GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred C--------CCCCHHHHHHHhCCCCcccHHHH
Confidence 2 23444444455678999998643
No 113
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.34 E-value=2.2e-12 Score=121.68 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEE
Q 001150 136 QNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1138)
Q Consensus 136 ~~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~ 214 (1138)
....+.|....++|||+..||+.|.+..||..||+|... ++. +||+|+ |+|||||||+++. .+.|++||+|.
T Consensus 14 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~ 86 (100)
T 3po8_A 14 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIR 86 (100)
T ss_dssp SCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCCEETTEECS---EEECCTTCEEE
T ss_pred CCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCEEECCEECc---eEECCCCCEEE
Confidence 356788888899999999999999999999999999964 222 799999 6799999999997 68999999999
Q ss_pred EeecCCeeEEEE
Q 001150 215 FGSLGNHAYIFQ 226 (1138)
Q Consensus 215 f~~~~~~ayif~ 226 (1138)
|+.. .+.|+
T Consensus 87 iG~~---~~~~~ 95 (100)
T 3po8_A 87 LGHS---EIIVR 95 (100)
T ss_dssp ETTE---EEEEE
T ss_pred ECCE---EEEEE
Confidence 9663 44554
No 114
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.34 E-value=4.1e-12 Score=137.26 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCC--------cchhhHHHHHHhcC-----CCcEEEEeecccCCCccccCC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEKSH 708 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~--------~~~~~~lk~~L~~l-----~g~VvvIGstt~~d~~d~k~~ 708 (1138)
.+..+|+.+.. ..|.|+||||||.+.... .+....+...|..+ ...++++++++.++..|++
T Consensus 96 ~i~~~~~~~~~---~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~-- 170 (254)
T 1ixz_A 96 RVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA-- 170 (254)
T ss_dssp HHHHHHHHHTT---SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGG--
T ss_pred HHHHHHHHHHh---cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHH--
Confidence 35666766655 679999999999865421 12222222333222 2358889999988767777
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCC
Q 001150 709 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 788 (1138)
Q Consensus 709 ~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~N 788 (1138)
|+|+|| |+..++|++|+.++|.+||+.++.. +....+
T Consensus 171 -----l~r~~r----------------------------------f~~~i~i~~p~~~~r~~il~~~~~~----~~~~~~ 207 (254)
T 1ixz_A 171 -----LLRPGR----------------------------------FDRQIAIDAPDVKGREQILRIHARG----KPLAED 207 (254)
T ss_dssp -----GGSTTS----------------------------------SCEEEECCSCCHHHHHHHHHHHHTT----SCBCTT
T ss_pred -----HcCCCc----------------------------------CCeEEeeCCcCHHHHHHHHHHHHcC----CCCCcc
Confidence 666666 8889999999999999999876532 344455
Q ss_pred cchhhHhhhcCCCCcccccchhccc
Q 001150 789 LNHLRTVLGRSGLECEGLETLCIRD 813 (1138)
Q Consensus 789 v~~l~~vL~t~glsgaDL~~Lci~a 813 (1138)
++....+..+.|+.|+||+.+|..+
T Consensus 208 ~~~~~la~~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 208 VDLALLAKRTPGFVGADLENLLNEA 232 (254)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5556667778899999998887754
No 115
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.32 E-value=1.3e-12 Score=128.64 Aligned_cols=95 Identities=20% Similarity=0.390 Sum_probs=79.2
Q ss_pred CcchhhcccCC---CCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeecc
Q 001150 125 TPWCRLLSQSG---QNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLK 200 (1138)
Q Consensus 125 ~pWgrL~s~~~---~~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~g 200 (1138)
.+|++|+-... ....+.|....|+|||+..|||+|.+..||..||+|.... + .+||+|+ |+|||||||+++.
T Consensus 10 ~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~--~--~~~l~Dl~S~nGt~vNg~~i~ 85 (128)
T 1r21_A 10 WPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHE--Q--EAILHNFSSTNPTQVNGSVID 85 (128)
T ss_dssp CCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS--S--CEEECCCCSSSCCEETTEECS
T ss_pred CCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEEC--C--EEEEEECCCCCCEEECCEECC
Confidence 66788876542 3467888889999999999999999999999999999753 2 2799999 6799999999998
Q ss_pred CCCeeEccCCCEEEEeecCCeeEEEEee
Q 001150 201 KNTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1138)
Q Consensus 201 k~~~~~L~~gDeI~f~~~~~~ayif~~~ 228 (1138)
+ .+.|++||+|.|+ ...|.|...
T Consensus 86 ~--~~~L~~Gd~i~iG---~~~~~~~~~ 108 (128)
T 1r21_A 86 E--PVRLKHGDVITII---DRSFRYENE 108 (128)
T ss_dssp S--CEECCTTEEEECS---SCEEEEEEC
T ss_pred C--cEEcCCCCEEEEC---CEEEEEEeC
Confidence 4 7999999999996 346777755
No 116
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.31 E-value=3e-12 Score=143.36 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=119.2
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc---
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 975 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~--- 975 (1138)
+++|.....+.+.+.+.... ....+|||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA------------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC------------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh------------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 46677777777766664211 122579999999999999999999976 689999999876321
Q ss_pred --cccchH----H---HHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc-------cCC
Q 001150 976 --WFGEGE----K---YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDT 1039 (1138)
Q Consensus 976 --~iG~~E----~---~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~-------~~~ 1039 (1138)
++|... . .....|..+. .++||||||+.+. ..+...|+..++.... ...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS------------PLMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC------------HHHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC------------HHHHHHHHHHHhcCEeeecCCccccc
Confidence 222110 0 1123455554 4799999999883 1223344444443211 112
Q ss_pred CCEEEEEecCCC-------CCCcHHHHhcCCceEEecCCCHHHH----HHHHHHHHhh----CCCC----CcccHHHHHH
Q 001150 1040 ERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAK----EDLS----PDVDFDAIAN 1100 (1138)
Q Consensus 1040 ~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v~lPd~eeR----~eIL~~ll~k----~~l~----~dvdl~~LA~ 1100 (1138)
..+.||+|||.. ..+++.+..||. .+.+..|+..+| ..+++.++.. .+.. .+..+..|..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 468899999975 356788889995 666666665544 4466655543 2211 2223455555
Q ss_pred HcCCCcHHHHHHHHHHHHHHH
Q 001150 1101 MTDGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1101 ~teGySgaDL~~L~~~Aa~~a 1121 (1138)
..-.-+.++|+++++.|+..+
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 542336688999998887654
No 117
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.31 E-value=6.7e-12 Score=121.37 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEE
Q 001150 136 QNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1138)
Q Consensus 136 ~~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~ 214 (1138)
....+.|....++|||+..|||+|.+..||..||+|... ++ .+||+|+ |+|||||||+++. .+.|++||+|.
T Consensus 22 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~--~~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~ 94 (115)
T 2xt9_B 22 AGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GG--EFQVVDVGSLNGTYVNREPVD---SAVLANGDEVQ 94 (115)
T ss_dssp TTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TT--EEEEEECSCSSCEEETTEECS---EEEECTTCEEE
T ss_pred CCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CC--EEEEEECCCCCCeEECCEEcc---eEECCCCCEEE
Confidence 346778888899999999999999999999999999985 22 3799999 7899999999997 68999999999
Q ss_pred EeecCCeeEEEEeecc
Q 001150 215 FGSLGNHAYIFQQLLN 230 (1138)
Q Consensus 215 f~~~~~~ayif~~~~~ 230 (1138)
|+. ..|.|+.-..
T Consensus 95 iG~---~~l~~~~~~~ 107 (115)
T 2xt9_B 95 IGK---FRLVFLTGPK 107 (115)
T ss_dssp ETT---EEEEEEC---
T ss_pred ECC---EEEEEEeCCC
Confidence 965 4667765443
No 118
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.30 E-value=7.8e-12 Score=125.68 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=70.8
Q ss_pred CcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEEE
Q 001150 137 NSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVF 215 (1138)
Q Consensus 137 ~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~f 215 (1138)
...+.|....++|||+..|||+|.+..||..||+|... ++ .+||+|+ |+|||||||++|. .+.|++||+|.|
T Consensus 58 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~--~~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EG--EFEVVDVGSLNGTYVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp TCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TT--EEEEEESCCSSCCEETTEECS---EEECCTTEEEEE
T ss_pred CeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CC--EEEEEECCCcCCeEECCEEcc---eEECCCCCEEEE
Confidence 35677788899999999999999999999999999984 33 3799999 7899999999998 689999999999
Q ss_pred eecCCeeEEEEeec
Q 001150 216 GSLGNHAYIFQQLL 229 (1138)
Q Consensus 216 ~~~~~~ayif~~~~ 229 (1138)
+. ..|.|+.-+
T Consensus 131 G~---~~l~f~~~~ 141 (143)
T 2kb3_A 131 GK---FRLVFLAGP 141 (143)
T ss_dssp TT---EEEEEEECC
T ss_pred CC---EEEEEEeCC
Confidence 64 466776543
No 119
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.28 E-value=1.4e-12 Score=130.57 Aligned_cols=86 Identities=16% Similarity=0.303 Sum_probs=72.9
Q ss_pred cceeeeCC-eEEEcCCCC-cceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEE
Q 001150 138 SNVPICAS-IFTVGSSRQ-CNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1138)
Q Consensus 138 ~~~~i~~~-~~tvGr~~~-cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~ 214 (1138)
..+.|... .|+|||+.. |||+|.+..||..||+|.....++. +||+|+ |+|||||||++|.++..+.|+.||+|.
T Consensus 47 ~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 47 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKR--VFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCC--EEEECCSCSSCEESSSCEECSSSCCEECTTCCBB
T ss_pred eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCc--EEEEECCCCCCeEECCEECCCCccEECCCCCEEE
Confidence 46777774 599999998 9999999999999999987642233 699998 889999999999999999999999999
Q ss_pred EeecCCeeEEEE
Q 001150 215 FGSLGNHAYIFQ 226 (1138)
Q Consensus 215 f~~~~~~ayif~ 226 (1138)
|+.... .|+|.
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987654 35544
No 120
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.28 E-value=7.8e-12 Score=131.86 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=73.2
Q ss_pred CcceeeeC-CeEEEcCCC---------------CcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeec
Q 001150 137 NSNVPICA-SIFTVGSSR---------------QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNL 199 (1138)
Q Consensus 137 ~~~~~i~~-~~~tvGr~~---------------~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~ 199 (1138)
...+.|.. +.|+|||.. .|||+|.+..||..||.|.....++....||+|+ |+|||||||++|
T Consensus 94 i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~rI 173 (205)
T 3elv_A 94 WKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI 173 (205)
T ss_dssp SEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEEC
T ss_pred ceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEEC
Confidence 45678854 899999984 4999999999999999998766556566899999 889999999999
Q ss_pred cCCCeeEccCCCEEEEeecC
Q 001150 200 KKNTSCELRSGDEVVFGSLG 219 (1138)
Q Consensus 200 gk~~~~~L~~gDeI~f~~~~ 219 (1138)
.++..+.|++||+|.|+.+.
T Consensus 174 ~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 174 PGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp CBTSCEECCTTCEEESSSSG
T ss_pred CCCceeECCCCCEEEECCCC
Confidence 99999999999999999866
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.28 E-value=1.5e-10 Score=130.89 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=120.0
Q ss_pred chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCc---------------------
Q 001150 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 963 (1138)
Q Consensus 905 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~--------------------- 963 (1138)
.+++..+.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72 (334)
T ss_dssp GGHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 456666777666642 2334579999999999999999999998542
Q ss_pred ---eEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc
Q 001150 964 ---FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1036 (1138)
Q Consensus 964 ---fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~ 1036 (1138)
++.++...- + .......++.+++.+... .+.|++|||+|.|- ....+.|+..++..
T Consensus 73 ~~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEep-- 135 (334)
T 1a5t_A 73 HPDYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEEP-- 135 (334)
T ss_dssp CTTEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTSC--
T ss_pred CCCEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcCC--
Confidence 333332200 0 011234567777776543 36899999999882 12345566666542
Q ss_pred cCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 001150 1037 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1138)
Q Consensus 1037 ~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~ 1116 (1138)
..++++|.+|+.++.+.+.+++|+ .++.|+.|+.++..++++... . ..+..+..++..+.|.. +.+.++++.
T Consensus 136 --~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G~~-r~a~~~l~~ 207 (334)
T 1a5t_A 136 --PAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAGSP-GAALALFQG 207 (334)
T ss_dssp --CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTTCH-HHHHHTTSS
T ss_pred --CCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCCCH-HHHHHHhcc
Confidence 356888888999999999999999 689999999999999888764 2 23445678888888744 445555443
No 122
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=4.5e-11 Score=134.98 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=121.8
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CceEEEecccc
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg-----~~fi~Id~seL 972 (1138)
.+|+++.|.+.+.+.|...+.. + +. .++||+||||+|||++|+++|+.+. ..++.++.++.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 4688999999999998887752 1 22 2499999999999999999999973 23566666542
Q ss_pred ccccccchHHHHHHHHHHHh------ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEE
Q 001150 973 TSKWFGEGEKYVKAVFSLAS------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1138)
Q Consensus 973 ~s~~iG~~E~~I~~lF~~A~------k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIa 1046 (1138)
.+ ...++..+.... ...+.|++|||+|.+. ... .+.|+..++.. ...+.+|.
T Consensus 88 ~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~-------~~~L~~~le~~----~~~~~~il 145 (340)
T 1sxj_C 88 RG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----NAA-------QNALRRVIERY----TKNTRFCV 145 (340)
T ss_dssp CS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----HHH-------HHHHHHHHHHT----TTTEEEEE
T ss_pred cc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----HHH-------HHHHHHHHhcC----CCCeEEEE
Confidence 11 122333222221 1236899999999883 111 23334344332 24567778
Q ss_pred ecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001150 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 1115 (1138)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~ 1115 (1138)
+||.+..+.+++++|+ ..+.|..++.++..+++..++...++. .+..+..++..+.|... .+.++++
T Consensus 146 ~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r-~~~~~l~ 213 (340)
T 1sxj_C 146 LANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR-RVLNVLQ 213 (340)
T ss_dssp EESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHH-HHHHHTT
T ss_pred EecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 8899999999999999 588999999999999999988665544 33446677777766333 3334333
No 123
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.28 E-value=2.2e-11 Score=124.82 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=69.9
Q ss_pred CcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEEE
Q 001150 137 NSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVF 215 (1138)
Q Consensus 137 ~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~f 215 (1138)
...+.|....++|||+..|||+|.+..||..||+|.+. ++ .+||+|+ |+|||||||++|. .+.|++||+|.|
T Consensus 67 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~--~~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 67 GSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NN--EFNVVDVGSLNGTYVNREPVD---SAVLANGDEVQI 139 (162)
T ss_dssp SCEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TT--EEEEECCCCSSCEEETTBCCS---EEECCSSCEEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CC--EEEEEECCCCCCeEECCEEcc---eEECCCCCEEEE
Confidence 35677778899999999999999999999999999984 23 3799999 7899999999997 589999999999
Q ss_pred eecCCeeEEEEee
Q 001150 216 GSLGNHAYIFQQL 228 (1138)
Q Consensus 216 ~~~~~~ayif~~~ 228 (1138)
+. ..|.|..-
T Consensus 140 G~---~~l~f~~~ 149 (162)
T 2kfu_A 140 GK---FRLVFLTG 149 (162)
T ss_dssp TT---EEEEEECS
T ss_pred CC---EEEEEEeC
Confidence 65 45666643
No 124
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.27 E-value=6.1e-12 Score=150.00 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=111.6
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CceEEEecc-----cccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-----SITS 974 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~s-----eL~s 974 (1138)
.+.|.+++++.+...+.. ..++||+||||||||+||+++|+.++ .+|..+.+. ++++
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 356888888777665531 14799999999999999999999984 455555543 2222
Q ss_pred ccccchHHHHHHHHHHHhcc---CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhc-------CCCccCCCCEEE
Q 001150 975 KWFGEGEKYVKAVFSLASKI---APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRTKDTERILV 1044 (1138)
Q Consensus 975 ~~iG~~E~~I~~lF~~A~k~---~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ld-------gl~~~~~~~VLV 1044 (1138)
.+.+..... ...|..+.+. .++|||||||+.+ . ..+.+.|+..|+ +.....+.++ +
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----~-------~~~q~~LL~~lee~~v~i~G~~~~~~~~~-i 152 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----G-------PAILNTLLTAINERQFRNGAHVEKIPMRL-L 152 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-----C-------HHHHHHHHHHHHSSEEECSSSEEECCCCE-E
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----c-------HHHHHHHHHHHHHHhccCCCCcCCcchhh-h
Confidence 222111111 1223222221 4679999999866 2 223334444443 2222223444 5
Q ss_pred EEecCCCC---CCcHHHHhcCCceEEecCCCH-HHHHHHHHHHHhhC-----------------------CCC-CcccHH
Q 001150 1045 LAATNRPF---DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVILAKE-----------------------DLS-PDVDFD 1096 (1138)
Q Consensus 1045 IaTTN~p~---~Ld~aLlrRFd~~I~v~lPd~-eeR~eIL~~ll~k~-----------------------~l~-~dvdl~ 1096 (1138)
|+|||... .+.+++++||...+.++.|+. +++.+|++...... .+. ++.-++
T Consensus 153 I~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e 232 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFE 232 (500)
T ss_dssp EEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHH
T ss_pred hhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHH
Confidence 66667532 355799999988899999987 77888887643211 111 111234
Q ss_pred HHHHHc---------CCCcHHHHHHHHHHHHHHHH
Q 001150 1097 AIANMT---------DGYSGSDLKNLCVTAAHRPI 1122 (1138)
Q Consensus 1097 ~LA~~t---------eGySgaDL~~L~~~Aa~~ai 1122 (1138)
.++... .|.+.+.+..++..|...|.
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~ 267 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAF 267 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHh
Confidence 444443 37788888888777655554
No 125
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.25 E-value=3.5e-11 Score=132.08 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcC--------CcchhhHHHHHHhcCCC-----cEEEEeecccCCCccccCC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRLEKLPD-----KVIVIGSHTHTDNRKEKSH 708 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~--------~~~~~~~lk~~L~~l~g-----~VvvIGstt~~d~~d~k~~ 708 (1138)
.+..+|+.+.. ..|.|+|||||+.+... +.+....+...|..++| .++++++++.++..|++
T Consensus 120 ~i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~-- 194 (278)
T 1iy2_A 120 RVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA-- 194 (278)
T ss_dssp HHHHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH--
T ss_pred HHHHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh--
Confidence 35667776665 67999999999986542 12223333344433332 48889999988765555
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCC
Q 001150 709 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 788 (1138)
Q Consensus 709 ~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~N 788 (1138)
|+|+|| |+..++|++|+.++|.+||+.++.. .....+
T Consensus 195 -----l~r~~r----------------------------------f~~~i~i~~p~~~~r~~il~~~~~~----~~~~~~ 231 (278)
T 1iy2_A 195 -----LLRPGR----------------------------------FDRQIAIDAPDVKGREQILRIHARG----KPLAED 231 (278)
T ss_dssp -----HHSTTS----------------------------------SCCEEECCCCCHHHHHHHHHHHHTT----SCBCTT
T ss_pred -----HcCCCc----------------------------------CCeEEEeCCcCHHHHHHHHHHHHcc----CCCCcc
Confidence 445555 8899999999999999999976532 344455
Q ss_pred cchhhHhhhcCCCCcccccchhccc
Q 001150 789 LNHLRTVLGRSGLECEGLETLCIRD 813 (1138)
Q Consensus 789 v~~l~~vL~t~glsgaDL~~Lci~a 813 (1138)
+.....+..+.|+.++||+.+|..+
T Consensus 232 ~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 232 VDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5555667778899999998876643
No 126
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.25 E-value=1.2e-11 Score=123.48 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=71.7
Q ss_pred ceeeeCC-----eEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccC--------CCe
Q 001150 139 NVPICAS-----IFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKK--------NTS 204 (1138)
Q Consensus 139 ~~~i~~~-----~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk--------~~~ 204 (1138)
.+.|... .|+|||+..|||+|.+..||..||+|.....++ .+||+|+ |+|||||||+++.+ +..
T Consensus 21 ~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~--~~~l~DlgS~NGT~vNg~~i~~~~~~~~~~~~~ 98 (139)
T 1mzk_A 21 QHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKF--KWELVDMGSLNGTLVNSHSISHPDLGSRKWGNP 98 (139)
T ss_dssp EEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTT--EEEEEETTCSSCCEETTEESSCCCTTTCCCCCC
T ss_pred EEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCC--EEEEEECCCCCCEEECCEECcCcccccccCCce
Confidence 4555553 799999999999999999999999999875433 4799999 78999999999995 889
Q ss_pred eEccCCCEEEEeecCCeeEEEEeec
Q 001150 205 CELRSGDEVVFGSLGNHAYIFQQLL 229 (1138)
Q Consensus 205 ~~L~~gDeI~f~~~~~~ayif~~~~ 229 (1138)
+.|++||+|.|+.. .++|..+.
T Consensus 99 ~~L~~GD~I~iG~~---~~~~~~~~ 120 (139)
T 1mzk_A 99 VELASDDIITLGTT---TKVYVRIS 120 (139)
T ss_dssp EECCTTEEEECSSS---CEEEEEEE
T ss_pred EECCCCCEEEECCE---EEEEEEcC
Confidence 99999999999654 45665553
No 127
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.22 E-value=2.5e-11 Score=123.59 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=68.6
Q ss_pred CCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEE
Q 001150 136 QNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1138)
Q Consensus 136 ~~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~ 214 (1138)
....+.|....++|||+..|||+|.+..||..||+|.... +. ++|+|+ |+|||||||++|. .+.|+.||+|.
T Consensus 76 ~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~--~~--~~l~DlgStNGT~VNG~~i~---~~~L~~GD~I~ 148 (157)
T 3oun_A 76 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG--QV--ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIR 148 (157)
T ss_dssp TCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS--SC--EEEEECSCSSCCEETTEECS---EEECCTTCEEE
T ss_pred CCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC--CE--EEEEECCCCCCeEECCEECc---eEECCCCCEEE
Confidence 3567888888999999999999999999999999998743 22 799999 7899999999996 69999999999
Q ss_pred EeecCCeeEEE
Q 001150 215 FGSLGNHAYIF 225 (1138)
Q Consensus 215 f~~~~~~ayif 225 (1138)
|+. ..++|
T Consensus 149 lG~---~~l~f 156 (157)
T 3oun_A 149 LGH---SEIIV 156 (157)
T ss_dssp ETT---EEEEE
T ss_pred ECC---EEEEE
Confidence 864 34555
No 128
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.22 E-value=4.3e-11 Score=121.67 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=68.2
Q ss_pred eeCCeEEEcCCC---CcceeecCCCCccceEEEEEEecCCc-eEEEEEEeCCCceEEcCeeccCCCeeEccCCCEEEEee
Q 001150 142 ICASIFTVGSSR---QCNFPLKDQAISAVLCKIKHVQSEGS-AVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGS 217 (1138)
Q Consensus 142 i~~~~~tvGr~~---~cd~~l~~~~~s~~hcki~~~~~~~~-~~~~led~s~nGt~VNg~~~gk~~~~~L~~gDeI~f~~ 217 (1138)
|....++|||.. .|||.|.+..||..||.|.....++. .++++++.|+|||||||++|.+ .+.|++||+|.|+.
T Consensus 58 L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~~--~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 58 IKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTE--PSILRSGNRIIMGK 135 (154)
T ss_dssp CCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECCS--CEECCTTCEEEETT
T ss_pred eCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcCC--ceECCCCCEEEECC
Confidence 445789999976 79999999999999999998765543 3677788899999999999953 78999999999963
Q ss_pred cCCeeEEEEe
Q 001150 218 LGNHAYIFQQ 227 (1138)
Q Consensus 218 ~~~~ayif~~ 227 (1138)
.|.|.|.+
T Consensus 136 --~~~Frf~~ 143 (154)
T 4ejq_A 136 --SHVFRFNH 143 (154)
T ss_dssp --TEEEEEEC
T ss_pred --cEEEEEcC
Confidence 46778764
No 129
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.22 E-value=3.2e-11 Score=114.95 Aligned_cols=81 Identities=21% Similarity=0.401 Sum_probs=67.5
Q ss_pred cceeeeC-CeEEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEE
Q 001150 138 SNVPICA-SIFTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1138)
Q Consensus 138 ~~~~i~~-~~~tvGr~~-~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~ 214 (1138)
..+.|.. ..|+|||+. .|||.|.+..||..||+|.....+ . +||+|+ |+|||||||+++.+ .+.|++||+|.
T Consensus 17 ~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~-~--~~l~Dl~S~nGt~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 17 AEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDN-S--VLIEDLGSKNGVIVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp CEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTS-C--EEEEECSCSSCCEETTEECSS--EEECCTTCCEE
T ss_pred EEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCC-c--EEEEECcCCCCeEECCEECCC--CeECCCCCEEE
Confidence 4566776 469999999 799999999999999999875322 2 799999 77999999999987 68999999999
Q ss_pred EeecCCeeEEEE
Q 001150 215 FGSLGNHAYIFQ 226 (1138)
Q Consensus 215 f~~~~~~ayif~ 226 (1138)
|+.. .|.|.
T Consensus 92 ~G~~---~~~~~ 100 (106)
T 3gqs_A 92 LGTT---LFLLV 100 (106)
T ss_dssp ETTE---EEEEE
T ss_pred ECCE---EEEEE
Confidence 8653 45554
No 130
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.18 E-value=4.5e-11 Score=116.46 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=68.2
Q ss_pred cceeeeCCeEEEcC--CCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCCCeeEccCCCEEE
Q 001150 138 SNVPICASIFTVGS--SRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1138)
Q Consensus 138 ~~~~i~~~~~tvGr--~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~L~~gDeI~ 214 (1138)
..+.|....++||| +..|||+|.+..||..||.|... ++ .++|+|+ |+|||||||++|. ..+.|++||+|.
T Consensus 29 ~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~--~~~l~dl~S~ngt~vNg~~i~--~~~~L~~GD~I~ 102 (120)
T 1wln_A 29 KLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DG--VVTVTPRSMDAETYVDGQRIS--ETTMLQSGMRLQ 102 (120)
T ss_dssp CEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SS--CEEEEESCSSSCEEETSCBCS--SCEEECTTCEEE
T ss_pred EEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CC--EEEEEECCCCCCEEECCEEcC--CCEECCCCCEEE
Confidence 34677778899996 57999999999999999999974 22 2799999 4799999999997 468999999999
Q ss_pred EeecCCeeEEEEe
Q 001150 215 FGSLGNHAYIFQQ 227 (1138)
Q Consensus 215 f~~~~~~ayif~~ 227 (1138)
|+.. +.|.|..
T Consensus 103 iG~~--~~~~f~~ 113 (120)
T 1wln_A 103 FGTS--HVFKFVD 113 (120)
T ss_dssp ETTT--EEEEEEC
T ss_pred ECCc--eEEEEEC
Confidence 9763 5677763
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.17 E-value=3.8e-11 Score=119.55 Aligned_cols=131 Identities=8% Similarity=0.110 Sum_probs=85.5
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 978 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG 978 (1138)
+++|.....+.+.+.+.... ....+|||+||||||||++|+++++.. +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 35566666666666554211 112469999999999999999999987 78999 999876543
Q ss_pred chHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC-------
Q 001150 979 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP------- 1051 (1138)
Q Consensus 979 ~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p------- 1051 (1138)
......|..+. .++|||||||.+- ......|+..+... ..++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~---~g~l~ldei~~l~------------~~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQ---GGTLVLSHPEHLT------------REQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHT---TSCEEEECGGGSC------------HHHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcC---CcEEEEcChHHCC------------HHHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHc
Confidence 23445566664 4899999999882 12223344444222 3457788888864
Q ss_pred CCCcHHHHhcCCceEEecCC
Q 001150 1052 FDLDEAVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1052 ~~Ld~aLlrRFd~~I~v~lP 1071 (1138)
..+.+.+..|+. .+.+..|
T Consensus 124 ~~~~~~L~~rl~-~~~i~lP 142 (145)
T 3n70_A 124 NHIIAELYYCFA-MTQIACL 142 (145)
T ss_dssp SCCCHHHHHHHH-HHEEECC
T ss_pred CCCCHHHHHHhc-CCEEeCC
Confidence 356777777773 3444444
No 132
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=8.4e-12 Score=151.97 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=99.7
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEE----eccccccccc
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 977 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~I----d~seL~s~~i 977 (1138)
.+.|++.+++.+...+.... ...... ...+...++||+||||||||+||+++|+.++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~g~--~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGV--PKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCC--CEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhCCC--cccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 46788888877644333211 000000 1112234799999999999999999999997655442 2223322211
Q ss_pred cchH----HHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcC---------CCccCCCCEEE
Q 001150 978 GEGE----KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG---------LRTKDTERILV 1044 (1138)
Q Consensus 978 G~~E----~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldg---------l~~~~~~~VLV 1044 (1138)
.... ......+..| ..+||||||||.+- ... .+.|+..|+. .....+.++.|
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~-----~~~-------q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR-----DED-------RVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCC-----SHH-------HHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCC-----HhH-------hhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 1100 0001123333 34899999999872 222 2333333332 22223467899
Q ss_pred EEecCCCC-------------CCcHHHHhcCCce-EEecCCCHHHHHHHHHHHHhh
Q 001150 1045 LAATNRPF-------------DLDEAVIRRLPRR-LMVNLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1045 IaTTN~p~-------------~Ld~aLlrRFd~~-I~v~lPd~eeR~eIL~~ll~k 1086 (1138)
|||||... .|++++++|||.. +..+.|+.+ ...|+++++..
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 99999876 8999999999854 445677777 88888887754
No 133
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.16 E-value=5.9e-11 Score=137.28 Aligned_cols=95 Identities=17% Similarity=0.299 Sum_probs=80.7
Q ss_pred CCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeccCC
Q 001150 124 STPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKN 202 (1138)
Q Consensus 124 ~~pWgrL~s~~~~~~~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~-s~nGt~VNg~~~gk~ 202 (1138)
..||..|+..... ..+.|....++|||+..|||+|++..||..||+|... ++. +||+|+ |+|||||||++|.
T Consensus 286 ~~~~~~l~~~~~g-~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vng~~i~-- 358 (388)
T 2ff4_A 286 QQAVAYLHDIASG-RGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGVHVQHERIR-- 358 (388)
T ss_dssp SBCCCEEEETTTC-CEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCCEETTEECS--
T ss_pred CCCeEEEEECCCC-cEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCeEECCEECC--
Confidence 4689999886544 7899999999999999999999999999999999874 222 799998 6899999999995
Q ss_pred CeeEccCCCEEEEeecCCeeEEEEee
Q 001150 203 TSCELRSGDEVVFGSLGNHAYIFQQL 228 (1138)
Q Consensus 203 ~~~~L~~gDeI~f~~~~~~ayif~~~ 228 (1138)
..+.|++||+|.|+. ..|.|...
T Consensus 359 ~~~~L~~gd~i~~G~---~~~~~~~~ 381 (388)
T 2ff4_A 359 SAVTLNDGDHIRICD---HEFTFQIS 381 (388)
T ss_dssp SEEEECTTCEEEETT---EEEEEECS
T ss_pred CceECCCCCEEEECC---EEEEEEeC
Confidence 589999999999965 46667643
No 134
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.15 E-value=1.3e-10 Score=113.94 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=63.6
Q ss_pred CeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCCCeeEccCCCEEEEeecCCeeEE
Q 001150 145 SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYI 224 (1138)
Q Consensus 145 ~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~~~~~L~~gDeI~f~~~~~~ayi 224 (1138)
...+|||..+|||.|.+..||..||.|...+. | .++|+|+++|||||||+.|. ..+.|++||.|.|+.. +.|.
T Consensus 48 ~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~-g--~~~l~dl~~ngt~VNG~~V~--~~~~L~~GD~I~lG~~--~~Fr 120 (124)
T 3fm8_A 48 EHTLIGSANSQDIQLCGMGILPEHCIIDITSE-G--QVMLTPQKNTRTFVNGSSVS--SPIQLHHGDRILWGNN--HFFR 120 (124)
T ss_dssp SEEEEESSTTCSEECCSTTCCSSCEEEEECTT-S--CEEEEECTTCCEEETTEECC--SCEEECTTCEEEETTT--EEEE
T ss_pred CCeEECCCCCCCEEECCCCeecceEEEEECCC-C--eEEEEECCCCCEEECCEEcC--CcEECCCCCEEEECCC--eEEE
Confidence 45799999999999999999999999986422 2 36999999999999999997 4799999999999743 5666
Q ss_pred EE
Q 001150 225 FQ 226 (1138)
Q Consensus 225 f~ 226 (1138)
|.
T Consensus 121 Fn 122 (124)
T 3fm8_A 121 LN 122 (124)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 135
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.14 E-value=1.5e-11 Score=122.29 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=83.9
Q ss_pred cccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchH
Q 001150 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 981 (1138)
Q Consensus 902 DI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E 981 (1138)
+++|.+...+.+.+.+.... ....+|||+||||||||++|+++++... +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 45677777777777665211 1124699999999999999999999888 99999998865433
Q ss_pred HHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC-CC----CcH
Q 001150 982 KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-FD----LDE 1056 (1138)
Q Consensus 982 ~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p-~~----Ld~ 1056 (1138)
...+|..+. .++|||||||.+- .. ....++..++... ..++.+|+|||.+ .. +++
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l~-----~~-------~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQYS-----RN-------IQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTCC-----HH-------HHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHCC-----HH-------HHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccH
Confidence 455666554 4899999999882 11 1222333332211 3457888888754 33 455
Q ss_pred HHHhcCCceEEecCC
Q 001150 1057 AVIRRLPRRLMVNLP 1071 (1138)
Q Consensus 1057 aLlrRFd~~I~v~lP 1071 (1138)
.+..||. .+.+.+|
T Consensus 127 ~L~~rl~-~~~i~lP 140 (143)
T 3co5_A 127 KLAGLFS-ESVVRIP 140 (143)
T ss_dssp HHHHHSS-SEEEEEC
T ss_pred HHHHHhc-CcEEeCC
Confidence 6667873 3344444
No 136
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=1.7e-09 Score=121.32 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCceEEEecccccccccc
Q 001150 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 978 (1138)
Q Consensus 905 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el------g~~fi~Id~seL~s~~iG 978 (1138)
|++++.+.|+..+.. + + .+.+||+||||+|||++|+++|+.+ ...|+.+++.. . .
T Consensus 1 g~~~~~~~L~~~i~~----------~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--N 61 (305)
T ss_dssp ---CHHHHHHHHHHT----------C---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--C
T ss_pred ChHHHHHHHHHHHHC----------C---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--C
Confidence 455666777776652 1 2 3589999999999999999999874 34677776542 0 1
Q ss_pred chHHHHHHHHHHHhccC----CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCC
Q 001150 979 EGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1138)
Q Consensus 979 ~~E~~I~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L 1054 (1138)
..-..++.+++.+...+ ..|+||||+|.|- ....+.|+..++.. +..+++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhC
Confidence 22335777888776543 4799999999882 22345566666543 3567888888889999
Q ss_pred cHHHHhcCCceEEecCCCHHHHHHHHHHHH
Q 001150 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1084 (1138)
Q Consensus 1055 d~aLlrRFd~~I~v~lPd~eeR~eIL~~ll 1084 (1138)
.+++++| ++.|..|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 89999999999999998876
No 137
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.00 E-value=3.7e-09 Score=120.92 Aligned_cols=205 Identities=15% Similarity=0.102 Sum_probs=126.7
Q ss_pred ccccchHHHHHHHHHHH-hcccCchhhhhcCCCCCCCceEEE--ECCCCCCHHHHHHHHHHHh---------CCceEEEe
Q 001150 901 DDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINIS 968 (1138)
Q Consensus 901 dDI~Gle~vk~~L~e~V-~~pl~~~e~f~~~~~~rP~~gILL--~GPPGTGKT~LArALA~el---------g~~fi~Id 968 (1138)
.++.|.+...+.|.+.+ ..... + .......++| +||+|+|||+|++++++.+ ++.++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56788888888887776 42111 1 0012357899 9999999999999999887 56778888
Q ss_pred cccccc------c---cc-------cc-hHHHHHHHHHHHh-ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 001150 969 MSSITS------K---WF-------GE-GEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1138)
Q Consensus 969 ~seL~s------~---~i-------G~-~E~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~ 1030 (1138)
+..... . .. +. .......+..... ...|.||+|||++.+...+. .... ++..++..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~----~l~~l~~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAE----DLYTLLRV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHH----HHHHHHTH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchH----HHHHHHHH
Confidence 643210 0 00 11 1122233333222 23578999999998853210 0112 23333333
Q ss_pred hcCCCccCC--CCEEEEEecCCCC---CCc---HHHHhcCCceEEecCCCHHHHHHHHHHHHhhCC---CCCcccHHHHH
Q 001150 1031 WDGLRTKDT--ERILVLAATNRPF---DLD---EAVIRRLPRRLMVNLPDAPNRAKILQVILAKED---LSPDVDFDAIA 1099 (1138)
Q Consensus 1031 Ldgl~~~~~--~~VLVIaTTN~p~---~Ld---~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~---l~~dvdl~~LA 1099 (1138)
+..... +. .++.+|++++.++ .++ +.+.++|...+.++.++.++..++++..+.... ...+..+..++
T Consensus 168 ~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 168 HEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 332211 12 5788888887654 344 667778877799999999999999988775422 12344577888
Q ss_pred HHcC------CCcHHHHHHHHHHHHHHH
Q 001150 1100 NMTD------GYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1100 ~~te------GySgaDL~~L~~~Aa~~a 1121 (1138)
..+. | .+..+.+++..|+..+
T Consensus 247 ~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 247 DVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 8888 7 4557778887766544
No 138
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.96 E-value=7.5e-10 Score=146.67 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=106.7
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCc----------hhhhhc------CC---------CCCCCce--EEEECCCCC
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQ---------LTKPCKG--ILLFGPPGT 947 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~----------~e~f~~------~~---------~~rP~~g--ILL~GPPGT 947 (1138)
...++|++++|++++++.+.+.+.+++.. ++.|.. .+ ...++++ +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999998843 334433 11 1123344 999999999
Q ss_pred CHHHHHHHHHHHh---CCceEEEeccccc------------cccccc----hHHHHHHHHHHHhccCCeEEEEcCCcccc
Q 001150 948 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVIFVDEVDSML 1008 (1138)
Q Consensus 948 GKT~LArALA~el---g~~fi~Id~seL~------------s~~iG~----~E~~I~~lF~~A~k~~PsIIfIDEID~L~ 1008 (1138)
|||+||+++|.+. |.+.+.|+..+.. ++|+++ .|+.++.+|..|+...|++||+|+|+.|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999887 5666666655432 677777 89999999999999999999999999998
Q ss_pred cCCC-----CcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC
Q 001150 1009 GRRE-----NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1138)
Q Consensus 1009 ~~r~-----~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~ 1050 (1138)
+.+. ...+.....+++++++..++++... .+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eecc
Confidence 7732 1111255667888999888886443 567777 5665
No 139
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.94 E-value=2.5e-09 Score=102.31 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=80.1
Q ss_pred chhhcccCCCCcceeee--CCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCCCe
Q 001150 127 WCRLLSQSGQNSNVPIC--ASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTS 204 (1138)
Q Consensus 127 WgrL~s~~~~~~~~~i~--~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~~~ 204 (1138)
-|.|.|++...|.|.|+ ....+|||+. +..+.|..+|..||+|.-.-.++ .+.+.++|.|+++|||.+++|+..
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p--~t~I~DkrcSR~hv~L~ad~~~~--~v~vk~lG~Np~~vng~~l~k~~~ 84 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGP--LTQVTDRKCSRTQVELVADPETR--TVAVKQLGVNPSTTGTQELKPGLE 84 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBT--TTTBCCTTSCSSCEEEEEETTTT--EEEEEECSSSCCEEC-CBCCTTCE
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccceeeeEEEEEecCCC--EEEEEEcccCCcEECCEEcCCCCE
Confidence 68899999999999997 5899999999 45589999999999998654443 468899999999999999999999
Q ss_pred eEccCCCEEEEeecCCeeEEEE
Q 001150 205 CELRSGDEVVFGSLGNHAYIFQ 226 (1138)
Q Consensus 205 ~~L~~gDeI~f~~~~~~ayif~ 226 (1138)
+.|++||.|.+. ++.|.|-|+
T Consensus 85 ~~L~~GD~leLl-~g~y~~~v~ 105 (110)
T 2brf_A 85 GSLGVGDTLYLV-NGLHPLTLR 105 (110)
T ss_dssp EEEETTCEEEEE-TTEEEEEEE
T ss_pred EEecCCCEEEEc-cCCeEEEEE
Confidence 999999999984 555555544
No 140
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.91 E-value=2.1e-09 Score=131.07 Aligned_cols=49 Identities=31% Similarity=0.429 Sum_probs=41.4
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg 961 (1138)
...|++++|.+.+.+.+...+.. ...+||+||||||||+||++||..+.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35689999999999888777652 13799999999999999999999884
No 141
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.90 E-value=5.8e-09 Score=98.78 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=79.3
Q ss_pred chhhcccCCCCcceeeeCCe-EEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCCCee
Q 001150 127 WCRLLSQSGQNSNVPICASI-FTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTSC 205 (1138)
Q Consensus 127 WgrL~s~~~~~~~~~i~~~~-~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~~~~ 205 (1138)
-|-|.|++...+.|.|+... .+|||+..|.| .|..+|..||.|.-...++ .+.+.++|.|+++|||++++|+..+
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g--~v~vk~lg~Np~~vng~~l~k~~~~ 79 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKG--YVKVKQVGVNPTSIDSVVIGKDQEV 79 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTT--EEEEEECSSSCCEETTEECCBTCEE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCC--EEEEEECcCCCCeECCEEcCCCCeE
Confidence 36788999999999998854 78999998855 7999999999998765454 5789999999999999999999999
Q ss_pred EccCCCEEEEeecCCeeEEE
Q 001150 206 ELRSGDEVVFGSLGNHAYIF 225 (1138)
Q Consensus 206 ~L~~gDeI~f~~~~~~ayif 225 (1138)
.|++||.|.+.. +.|.|-+
T Consensus 80 ~L~~GD~l~Ll~-~~~~~~v 98 (102)
T 3kt9_A 80 KLQPGQVLHMVN-ELYPYIV 98 (102)
T ss_dssp EECTTCCEEEET-TEEEEEE
T ss_pred EeCCCCEEEEcc-CCceEEE
Confidence 999999998854 3334443
No 142
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.85 E-value=7.7e-09 Score=102.43 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=83.4
Q ss_pred CcchhhcccCCCCcceeee--CCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCC
Q 001150 125 TPWCRLLSQSGQNSNVPIC--ASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKN 202 (1138)
Q Consensus 125 ~pWgrL~s~~~~~~~~~i~--~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~ 202 (1138)
.+-|.|.|++...+.|.|+ ....+|||+. ...|.|..+|..||+|.-.-.++ .+.+.++|.|+++|||.+++|+
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgP--et~ItDkRcSR~qv~L~ad~~~g--~V~Vk~lG~NP~~vng~~L~k~ 82 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIADPESR--TVAVKQLGVNPSTVGVHELKPG 82 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBT--TTTBCCSSSCSSCEEEEEETTTT--EEEEEECSSSCCEETTEECCTT
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCC--ccccccccccceeEEEEEecCCC--eEEEEEcccCCcEECCEEecCC
Confidence 5679999999999999997 5899999999 55689999999999998654333 4678999999999999999999
Q ss_pred CeeEccCCCEEEEeecCCeeEEEEe
Q 001150 203 TSCELRSGDEVVFGSLGNHAYIFQQ 227 (1138)
Q Consensus 203 ~~~~L~~gDeI~f~~~~~~ayif~~ 227 (1138)
..+.|++||.|.+. .|.|.|.|.-
T Consensus 83 ~~~~L~~GD~LeLl-~g~y~f~V~f 106 (143)
T 1yj5_C 83 LSGSLSLGDVLYLV-NGLYPLTLRW 106 (143)
T ss_dssp CEEEECTTCEEESS-SSCSEEEEEE
T ss_pred CEEEecCCCEEEEe-cCCceEEEEe
Confidence 99999999999984 5555665553
No 143
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.81 E-value=1.1e-08 Score=121.14 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=82.7
Q ss_pred HHHHHHHHhhcccCCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchh
Q 001150 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQT 722 (1138)
Q Consensus 643 i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~ 722 (1138)
+..+|+.+.. .+|.||||| +..++.+.|++.|+ +|.+.|||+||..++.+
T Consensus 256 ~~~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~------------------ 305 (468)
T 3pxg_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRK------------------ 305 (468)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHH------------------
T ss_pred HHHHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHHHHH------------------
Confidence 4556666665 789999999 67788888888885 58999999999887411
Q ss_pred hhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCC
Q 001150 723 ALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLE 802 (1138)
Q Consensus 723 ~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~gls 802 (1138)
..+++.+|.+|| +.|.|.+|+.+++..||+..+.+ +...+++.....++..
T Consensus 306 --------------------~~~~~~al~~Rf-~~i~v~~p~~e~~~~iL~~~~~~----~~~~~~~~i~~~al~~---- 356 (468)
T 3pxg_A 306 --------------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDR----YEAHHRVSITDDAIEA---- 356 (468)
T ss_dssp --------------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTT----SGGGSSCSCCHHHHHH----
T ss_pred --------------------HhhcCHHHHHhC-ccceeCCCCHHHHHHHHHHHHHH----HHHhcCCCCCHHHHHH----
Confidence 122467889999 67999999999999999977654 2233444444443331
Q ss_pred cccccchhccccccchhhHHHHHHHHHhhhh
Q 001150 803 CEGLETLCIRDQSLTNESAEKIVGWALSHHL 833 (1138)
Q Consensus 803 gaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l 833 (1138)
...+...++.+..++.+.++.+-..+....+
T Consensus 357 l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~ 387 (468)
T 3pxg_A 357 AVKLSDRYISDRFLPDKAIDLIDEAGSKVRL 387 (468)
T ss_dssp HHHHHHHSSCCSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcCCcHHHHHHHHHHHHHHh
Confidence 1233344555566666776666544443333
No 144
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.76 E-value=2.3e-08 Score=115.55 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=103.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc-----ccccchHH-------HHHHHHHHHhccCCeEEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEK-------YVKAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s-----~~iG~~E~-------~I~~lF~~A~k~~PsIIfI 1001 (1138)
..+||+|++||||+++|+++.... +.+|+.++|+.+.. ..+|...+ .....|+.|.. ++|||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfl 237 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADG---GTLFL 237 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCC---cEEEE
Confidence 468999999999999999999887 47999999987532 12221110 11234555544 89999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcC-------CCccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEE
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-------LRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1067 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldg-------l~~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1067 (1138)
|||+.| +.. +...|+..++. ........+.||+|||.. ..+.+.+..|+ ..+.
T Consensus 238 dei~~l-----~~~-------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~ 304 (387)
T 1ny5_A 238 DEIGEL-----SLE-------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL-GVIE 304 (387)
T ss_dssp ESGGGC-----CHH-------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEE
T ss_pred cChhhC-----CHH-------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCe
Confidence 999988 222 22223332221 111112467899999973 46677888888 4566
Q ss_pred ecCCCHHHH----HHHHHHHHhh----CCCC-CcccHHHHHHHc---CCCcHHHHHHHHHHHHHHH
Q 001150 1068 VNLPDAPNR----AKILQVILAK----EDLS-PDVDFDAIANMT---DGYSGSDLKNLCVTAAHRP 1121 (1138)
Q Consensus 1068 v~lPd~eeR----~eIL~~ll~k----~~l~-~dvdl~~LA~~t---eGySgaDL~~L~~~Aa~~a 1121 (1138)
+..|...+| ..+++.++.+ .+.. ..++.+.+..+. --.+.++|+++++.|+..+
T Consensus 305 i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 305 IEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp EECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred ecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 777776555 3445555433 3322 234444444333 2224579999999988754
No 145
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.76 E-value=5.3e-09 Score=101.29 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=82.1
Q ss_pred CcchhhcccCCCCcceeee--CCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCC
Q 001150 125 TPWCRLLSQSGQNSNVPIC--ASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKN 202 (1138)
Q Consensus 125 ~pWgrL~s~~~~~~~~~i~--~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~ 202 (1138)
..-|.|.|++...|.|.|+ ....+|||+. +..+.|..+|..||+|+-.-.++ .+.+.+++.|+++|||.+++|+
T Consensus 14 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp--~t~I~DkrcSR~qv~L~ad~~~~--~v~vk~lG~NP~~vng~~l~k~ 89 (119)
T 1ujx_A 14 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIADPESR--TVAVKQLGVNPSTVGVQELKPG 89 (119)
T ss_dssp CCCEEEECCSSSCCCCCCCTTSCCEEESBBT--TTTBCCTTSCTTSEEEEEETTTT--EEEEEECSSSCCBSSSSBCCTT
T ss_pred cceEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccccceeEEEEEecCCC--EEEEEEcccCCcEECCEEecCC
Confidence 4578999999999999997 5899999999 45689999999999998654333 4688999999999999999999
Q ss_pred CeeEccCCCEEEEeecCCeeEEEE
Q 001150 203 TSCELRSGDEVVFGSLGNHAYIFQ 226 (1138)
Q Consensus 203 ~~~~L~~gDeI~f~~~~~~ayif~ 226 (1138)
..+.|++||.|.+. ++.|.|-|+
T Consensus 90 ~~~~L~~GD~l~Ll-~g~y~~~v~ 112 (119)
T 1ujx_A 90 LSGSLSLGDVLYLV-NGLYPLTLR 112 (119)
T ss_dssp CEEEEETTCCCBCB-TTBSCCEEE
T ss_pred CEEEecCCCEEEEe-cCCeEEEEE
Confidence 99999999999884 455455554
No 146
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.75 E-value=2.1e-09 Score=126.15 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCccccccccccccccc-hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEE
Q 001150 385 DGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 463 (1138)
Q Consensus 385 ~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll 463 (1138)
+|++|.-.|+.+ .+. ++.|..|..+++-|+++..+....+ .....+.|||+|||| +++++||||||+.++++++
T Consensus 5 tP~~i~~~Ld~~--IvGqe~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppG--tGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 5 TPREIVSELDQH--IIGQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp CHHHHHHHHHTT--CCSCHHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCC--CCHHHHHHHHHHHcCCCce
Confidence 444555555542 232 8999999999999988776543221 122457899999999 9999999999999999999
Q ss_pred Eeeccccc
Q 001150 464 IFDSHSLL 471 (1138)
Q Consensus 464 ~~d~~~~~ 471 (1138)
.+|.+.+.
T Consensus 80 ~v~~~~~~ 87 (444)
T 1g41_A 80 KVEATKFT 87 (444)
T ss_dssp EEEGGGGC
T ss_pred eecchhhc
Confidence 99985553
No 147
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.74 E-value=3.2e-08 Score=136.47 Aligned_cols=139 Identities=24% Similarity=0.406 Sum_probs=93.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCCceEEEeccccccccccchHHHHHHHHHHH-h--------------ccCCeEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE-AGANFINISMSSITSKWFGEGEKYVKAVFSLA-S--------------KIAPSVIF 1000 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e-lg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A-~--------------k~~PsIIf 1000 (1138)
+++||+||||||||++|+.++.. .+..++.++++...+ ...+...++.. . ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 58999999999999999555444 478888888766432 22333433332 1 11246999
Q ss_pred EcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCcc------CCCCEEEEEecCCC-----CCCcHHHHhcCCceEEec
Q 001150 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DTERILVLAATNRP-----FDLDEAVIRRLPRRLMVN 1069 (1138)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~------~~~~VLVIaTTN~p-----~~Ld~aLlrRFd~~I~v~ 1069 (1138)
||||+.-...+. +.+. ...++.+++. ..++... .-.++.+|||+|.+ ..|+++|+||| .++.++
T Consensus 1342 iDEinmp~~d~y--g~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDKY--GSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCSS--SCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred eccccccccccc--Cchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 999985322221 1112 2334444442 2222211 11468999999998 48999999999 899999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001150 1070 LPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1070 lPd~eeR~eIL~~ll~k 1086 (1138)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998865
No 148
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.67 E-value=9.2e-08 Score=99.93 Aligned_cols=81 Identities=26% Similarity=0.432 Sum_probs=67.4
Q ss_pred eCCeEEEcCCC---CcceeecCCCCccceEEEEEEecCC-ceEEEEEEeCCCceEEcCeeccCCCeeEccCCCEEEEeec
Q 001150 143 CASIFTVGSSR---QCNFPLKDQAISAVLCKIKHVQSEG-SAVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGSL 218 (1138)
Q Consensus 143 ~~~~~tvGr~~---~cd~~l~~~~~s~~hcki~~~~~~~-~~~~~led~s~nGt~VNg~~~gk~~~~~L~~gDeI~f~~~ 218 (1138)
....-+|||.. .|||.|.+..|+..||.|....+++ ..+++|+..+.+.|||||+.|. ..+.|++||.|.|+
T Consensus 89 ~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~--~~~~L~~GDrI~lG-- 164 (184)
T 4egx_A 89 KDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT--EPSILRSGNRIIMG-- 164 (184)
T ss_dssp CSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETTEECC--SCEECCTTCEEEET--
T ss_pred CCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcCEEcc--ccEEcCCCCEEEEC--
Confidence 34678999964 6999999999999999998765443 3478999998888999999996 47899999999997
Q ss_pred CCeeEEEEe
Q 001150 219 GNHAYIFQQ 227 (1138)
Q Consensus 219 ~~~ayif~~ 227 (1138)
..|.|.|..
T Consensus 165 ~~h~Frfn~ 173 (184)
T 4egx_A 165 KSHVFRFNH 173 (184)
T ss_dssp TTEEEEEEC
T ss_pred CCCEEEECC
Confidence 346788864
No 149
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.66 E-value=5.8e-08 Score=107.17 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCeEEEEcchhhhhcC------CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCC
Q 001150 657 CPFILFMKDAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 730 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~------~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~ 730 (1138)
.+.||||||+|.+... ..+..+.|...|+..+.+++||++++..+. +
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-~-------------------------- 182 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-E-------------------------- 182 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-H--------------------------
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-H--------------------------
Confidence 4679999999997642 455667777778877889999999886531 0
Q ss_pred CccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 731 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 731 ~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
....++.+|.+||+..|.|+.|+.+++..||+..+.+
T Consensus 183 -----------~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 183 -----------NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp -----------HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred -----------HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 0011456788899999999999999999999977754
No 150
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.64 E-value=7e-08 Score=98.62 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=59.4
Q ss_pred Ccccccccc----hHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEe
Q 001150 897 GVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 968 (1138)
Q Consensus 897 ~vsfdDI~G----le~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id 968 (1138)
..+|+++.+ ...+.+.+++++... . ..+..+++|+||+|+|||+|++++++.+ |..++.++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNF----------N-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSC----------C-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhc----------c-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 356777764 344444454444321 1 1123679999999999999999999887 67777888
Q ss_pred ccccccccccchHH-HHHHHHHHHhccCCeEEEEcCCccc
Q 001150 969 MSSITSKWFGEGEK-YVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 969 ~seL~s~~iG~~E~-~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
+.++...+...... ....++... ..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 77664432211000 000122222 25789999999843
No 151
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.64 E-value=4.1e-08 Score=91.70 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=57.7
Q ss_pred cceeeeC-CeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCc-eEEcCeeccCCCeeEccCCCEE
Q 001150 138 SNVPICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKG-LQVNGKNLKKNTSCELRSGDEV 213 (1138)
Q Consensus 138 ~~~~i~~-~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nG-t~VNg~~~gk~~~~~L~~gDeI 213 (1138)
|.+.+.. ..|.|||.++|+++|++++||..|+.|.+..++ .|+ +.|+|| |||||.++ ..+.|..||-|
T Consensus 13 p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~-l~S~nGtVFVNGqrv---~~~~I~~gDtI 82 (102)
T 3uv0_A 13 PAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVR-LAALVGKIFVNDQEE---TVVDIGMENAV 82 (102)
T ss_dssp CCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEE-EEESSSCEEETTEEE---SEEEECGGGCB
T ss_pred ccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEE-EEeccCcEEECCEEe---eeEEccCCccc
Confidence 4454444 679999999999999999999999999998766 344 459999 79999999 58999999984
No 152
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.64 E-value=6.5e-07 Score=99.58 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=114.1
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc----
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 973 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~---- 973 (1138)
.....+.|.+...+.|.+ +.. ..++|+||+|+|||+|++.+++.++..++.+++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 345678888888887777 431 3799999999999999999999997777888765420
Q ss_pred -c---------------------------ccc-----c---c------hHHHHHHHHHHHhcc--CCeEEEEcCCccccc
Q 001150 974 -S---------------------------KWF-----G---E------GEKYVKAVFSLASKI--APSVIFVDEVDSMLG 1009 (1138)
Q Consensus 974 -s---------------------------~~i-----G---~------~E~~I~~lF~~A~k~--~PsIIfIDEID~L~~ 1009 (1138)
+ ... + . ....+..++...... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 000 0 0 011234455444432 389999999998743
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc---------HHHHhcCCceEEecCCCHHHHHHHH
Q 001150 1010 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---------EAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1138)
Q Consensus 1010 ~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld---------~aLlrRFd~~I~v~lPd~eeR~eIL 1080 (1138)
.. ...... .+..+. +.. .++.+|.|++....+. ..+..|+...+.+...+.++..+++
T Consensus 152 ~~-~~~~~~----~l~~~~---~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LR-GVNLLP----ALAYAY---DNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CT-TCCCHH----HHHHHH---HHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cC-chhHHH----HHHHHH---HcC-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 10 111111 222222 111 2466666665432111 1233355568899999999999999
Q ss_pred HHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 001150 1081 QVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1138)
Q Consensus 1081 ~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~ 1116 (1138)
...+...+...+. ...+...+.|+.. -+..++..
T Consensus 219 ~~~~~~~~~~~~~-~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKD-YEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCC-HHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHHcCCCCCc-HHHHHHHhCCCHH-HHHHHHHH
Confidence 9887654444333 3888889988654 46665544
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.59 E-value=2.4e-07 Score=93.08 Aligned_cols=105 Identities=24% Similarity=0.343 Sum_probs=68.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 1013 (1138)
..++|+||+|+|||+|+++++..+ |..++.++..++... +....+.||+|||++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~----- 96 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG----- 96 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC-----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC-----
Confidence 579999999999999999999988 777888888776543 112357899999999762
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecC-CCCCCc--HHHHhcCCceEEecC
Q 001150 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN-RPFDLD--EAVIRRLPRRLMVNL 1070 (1138)
Q Consensus 1014 ~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN-~p~~Ld--~aLlrRFd~~I~v~l 1070 (1138)
......+..+++.+.. . +..++|| |++ .+..+. +.+.+||.....+.+
T Consensus 97 ~~~~~~l~~li~~~~~-------~-g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 97 NEEQALLFSIFNRFRN-------S-GKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp SHHHHHHHHHHHHHHH-------H-TCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred hHHHHHHHHHHHHHHH-------c-CCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 1122333333333321 1 1222444 555 454332 899999976655543
No 154
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.52 E-value=1.8e-07 Score=107.40 Aligned_cols=168 Identities=23% Similarity=0.345 Sum_probs=99.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--ceEEEeccccccc-----cccchHH-------HHHHHHHHHhccCCeEEEEc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~--~fi~Id~seL~s~-----~iG~~E~-------~I~~lF~~A~k~~PsIIfID 1002 (1138)
..+|++|++||||+.+|+++....+. .|+.++|..+-.. .+|...+ .....|+.|.. ++||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCC---CeEEec
Confidence 35999999999999999999988743 3999999875221 1111110 01124555544 799999
Q ss_pred CCcccccCCCCcchHHHHHHHHHHHHHHhcCCC-------ccCCCCEEEEEecCCC-------CCCcHHHHhcCCceEEe
Q 001150 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMV 1068 (1138)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~Ld~aLlrRFd~~I~v 1068 (1138)
||+.| +. .+...|+..++... ......+.+|++||.. ..+.+.+..|+ .++.+
T Consensus 230 ei~~l-----~~-------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl-~~~~i 296 (368)
T 3dzd_A 230 EVGEL-----DQ-------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRL-SVFQI 296 (368)
T ss_dssp TGGGS-----CH-------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TSEEE
T ss_pred ChhhC-----CH-------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHh-CCeEE
Confidence 99988 22 22233333332211 1112357889999863 35667888888 45666
Q ss_pred cCCCHHHH----HHHHHHHHhh----CCCC-CcccHHHHHHHcC---CCcHHHHHHHHHHHHHH
Q 001150 1069 NLPDAPNR----AKILQVILAK----EDLS-PDVDFDAIANMTD---GYSGSDLKNLCVTAAHR 1120 (1138)
Q Consensus 1069 ~lPd~eeR----~eIL~~ll~k----~~l~-~dvdl~~LA~~te---GySgaDL~~L~~~Aa~~ 1120 (1138)
.+|...+| ..+++.++.+ .+.. ..++-+.+..+.. --+.++|+++++.|+..
T Consensus 297 ~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 297 YLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp ECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred eCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 66665554 4555555543 2222 2344444443332 22457888888877653
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.51 E-value=3.8e-06 Score=93.31 Aligned_cols=189 Identities=17% Similarity=0.183 Sum_probs=111.9
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccc----
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 973 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~---- 973 (1138)
.....+.|.+...+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 3446788888888888887641 1 4799999999999999999999986 6666653321
Q ss_pred --------c---cccc-------------------------chHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchH
Q 001150 974 --------S---KWFG-------------------------EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017 (1138)
Q Consensus 974 --------s---~~iG-------------------------~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~ 1017 (1138)
. ...+ .....+..+...+....|.+|+|||++.+..... ...
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~- 148 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGG- 148 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTT-
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cch-
Confidence 0 0000 0111222222223323489999999998742100 001
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCc---------HHHHhcCCceEEecCCCHHHHHHHHHHHHhhCC
Q 001150 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---------EAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1138)
Q Consensus 1018 ~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld---------~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~ 1088 (1138)
......+..+ ++.. .++.+|.|+.....+. ..+..|+...+.+...+.++..+++...+...+
T Consensus 149 ~~~~~~L~~~---~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 149 KELLALFAYA---YDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp HHHHHHHHHH---HHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHH---HHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 1112222222 2221 2466666654321111 123335556789999999999999998876555
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001150 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCV 1115 (1138)
Q Consensus 1089 l~-~dvdl~~LA~~teGySgaDL~~L~~ 1115 (1138)
.. .+..+..+...+.|+.. -+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 43 34456788888988654 4666554
No 156
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.50 E-value=2.1e-07 Score=96.64 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=47.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccccccch-HHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~iG~~-E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.+++|+||+|||||+||+++++.+ +.+++.++++++...+.... ...+..++..... +.+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 689999999999999999999988 77888888877644322110 0111223333332 469999999764
No 157
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.50 E-value=3e-07 Score=100.90 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=57.2
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 001150 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1138)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1138)
++++.-.|+++=+ =.++.+..|..++.-|+++..+..-.. -...++.|||+||+| .++++|||+||+.++.+++.+
T Consensus 6 ~~~l~~~l~~~i~-G~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~G--tGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 6 PREIVSELDQHII-GQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp HHHHHHHHHTTCC-SCHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTT--SSHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEE
Confidence 3444444544211 127788888888877766655432111 123457899999999 999999999999999999999
Q ss_pred eccccc
Q 001150 466 DSHSLL 471 (1138)
Q Consensus 466 d~~~~~ 471 (1138)
+.+.+.
T Consensus 82 ~~~~~~ 87 (310)
T 1ofh_A 82 EATKFT 87 (310)
T ss_dssp EGGGGS
T ss_pred cchhcc
Confidence 886654
No 158
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.47 E-value=3.2e-07 Score=102.03 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred cceeeeCCeEEEcCCCCc---ceeecCCCCccceEEEEEEe-------cCCceEEEEEEe-CCCceEEcCeeccCCCeeE
Q 001150 138 SNVPICASIFTVGSSRQC---NFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESI-GSKGLQVNGKNLKKNTSCE 206 (1138)
Q Consensus 138 ~~~~i~~~~~tvGr~~~c---d~~l~~~~~s~~hcki~~~~-------~~~~~~~~led~-s~nGt~VNg~~~gk~~~~~ 206 (1138)
..+.|....|+|||...+ +|.++++.||..|+.|.... ..+...++|+|+ |+|||||||++|. +.+..
T Consensus 14 kr~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~-~~~~~ 92 (325)
T 3huf_A 14 KSRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVG-QNGDS 92 (325)
T ss_dssp CCEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECC-TTCEE
T ss_pred eEEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECC-Cceee
Confidence 455566667999998763 36889999999999997642 112345899998 7799999999996 55556
Q ss_pred c-cCCCEEEEeecCCeeEEEE
Q 001150 207 L-RSGDEVVFGSLGNHAYIFQ 226 (1138)
Q Consensus 207 L-~~gDeI~f~~~~~~ayif~ 226 (1138)
| ..||+|.|+.... .|...
T Consensus 93 L~~dgd~I~fG~~~~-~fRl~ 112 (325)
T 3huf_A 93 YKEKDLKIQLGKCPF-TINAY 112 (325)
T ss_dssp ECSSEEEEEETTCSS-CEEEE
T ss_pred ecCCCCEEEecCCcc-eEEEE
Confidence 5 5799999987665 44433
No 159
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.46 E-value=4.1e-07 Score=120.93 Aligned_cols=76 Identities=28% Similarity=0.350 Sum_probs=59.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc----------------cccccccchHHHHHHHHHHHhccCCe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 997 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se----------------L~s~~iG~~E~~I~~lF~~A~k~~Ps 997 (1138)
+.+++|||+|+|||+||-+++.+. |-....++... +.-......|..+..+...++..+++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 449999999999999988776544 66666666532 23334556688888888899999999
Q ss_pred EEEEcCCcccccCCC
Q 001150 998 VIFVDEVDSMLGRRE 1012 (1138)
Q Consensus 998 IIfIDEID~L~~~r~ 1012 (1138)
+|+||.+..|.++.+
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987654
No 160
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.44 E-value=2.2e-07 Score=83.37 Aligned_cols=56 Identities=27% Similarity=0.512 Sum_probs=53.3
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001150 1069 NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1138)
Q Consensus 1069 ~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~e 1124 (1138)
++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999988888999999999999999999999999999999876
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.42 E-value=8.3e-07 Score=89.09 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcC-----CcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG-----NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~-----~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r 716 (1138)
.++.+++.+.. ..++.||||||+|.+... ..++.+.|...++. +++.+|++++..+...
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~------------ 165 (195)
T 1jbk_A 102 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQ------------ 165 (195)
T ss_dssp HHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHH------------
T ss_pred HHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHH------------
Confidence 45555554433 267999999999997642 46778888888754 7888899888654100
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 001150 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1138)
Q Consensus 717 ~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~IL 772 (1138)
...++.+|.+||. .+.|.+|+.+++.++|
T Consensus 166 --------------------------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 --------------------------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --------------------------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred --------------------------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 0114678888995 7999999999998775
No 162
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.39 E-value=4.7e-07 Score=103.52 Aligned_cols=67 Identities=31% Similarity=0.431 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhhccCCccccc---------------ccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 402 ENTKNVLIAASYIHLKHKDHAK---------------YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~---------------~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
+..|..|..+++.|++...... -..........|||+||+| +++++|||+||+.++.+++.+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 8899999999988876644210 0012344567899999999 9999999999999999999888
Q ss_pred cccc
Q 001150 467 SHSL 470 (1138)
Q Consensus 467 ~~~~ 470 (1138)
.+.+
T Consensus 105 ~~~~ 108 (376)
T 1um8_A 105 ATSL 108 (376)
T ss_dssp GGGC
T ss_pred chhh
Confidence 7444
No 163
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.39 E-value=2.3e-07 Score=85.26 Aligned_cols=58 Identities=26% Similarity=0.481 Sum_probs=54.3
Q ss_pred ecCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1068 VNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1068 v~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
-.+|+.++|.+||+.++++..+..++|+..||+.|+||||+||.+||++|++.++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999999999888889999999999999999999999999999999874
No 164
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.35 E-value=2.7e-07 Score=104.07 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=66.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc--eEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP 1014 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~--fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~ 1014 (1138)
..+||+||||+|||+||.++|...+.+ |+.+...+.++.+....+..+..+++.+.+.. +||||+|+.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 457999999999999999999876544 55553244333333455666666777666655 99999999985433221
Q ss_pred ch----HHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcH
Q 001150 1015 GE----HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1056 (1138)
Q Consensus 1015 ~~----~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~ 1056 (1138)
.. ...++..+..|...+.. .++.+|+++|. ...++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~------~gvtVIlttnp-~s~de 240 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAAS------RGCVVIASLNP-TSNDD 240 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHH------HTCEEEEECCC-SSCSS
T ss_pred cccchHHHHHHHHHHHHHHHHhh------CCCEEEEEeCC-cccch
Confidence 00 12344444444443332 34677788884 44443
No 165
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.32 E-value=1e-06 Score=100.39 Aligned_cols=68 Identities=29% Similarity=0.429 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccccc
Q 001150 402 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 471 (1138)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~ 471 (1138)
+..+..|..++..|.+...............+.|||+|||| +++++||||||+.++.+++.++.+.+.
T Consensus 21 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 21 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 77888888888777665443333334555678999999999 999999999999999999999886543
No 166
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.31 E-value=2.8e-06 Score=117.59 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=96.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1016 (1138)
.++++.||+|||||++++++|+.+|.+++.++|.+-+. ...+..+|..+.+. .+++++|||+++ ....
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc-----ChHH
Confidence 47899999999999999999999999999999987443 34567778777664 489999999976 3333
Q ss_pred HHHHHHHHHHHHHHh---------cCCCccCCCCEEEEEecC----CCCCCcHHHHhcCCceEEecCCCHHHHHHHHH
Q 001150 1017 HEAMRKMKNEFMVNW---------DGLRTKDTERILVLAATN----RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQ 1081 (1138)
Q Consensus 1017 ~~al~~il~~LL~~L---------dgl~~~~~~~VLVIaTTN----~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~ 1081 (1138)
..++...+..++..+ .|-...-..++.|++|.| ....|++++++|| +.+.+..|+.+...+|+-
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 333332232222222 111112235677888998 4568999999999 789999999988888754
No 167
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.31 E-value=1.7e-06 Score=104.25 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=31.5
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
..+-+||.||+| +++++|||+||+.++.++..++.
T Consensus 107 ~g~~vll~Gp~G--tGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPG--VGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSS--SSHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEe
Confidence 456799999999 99999999999999999887775
No 168
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.31 E-value=1.3e-06 Score=102.91 Aligned_cols=152 Identities=19% Similarity=0.133 Sum_probs=86.8
Q ss_pred ccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHH-HHHhCCceEEEe-cc---ccccccc
Q 001150 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINIS-MS---SITSKWF 977 (1138)
Q Consensus 903 I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArAL-A~elg~~fi~Id-~s---eL~s~~i 977 (1138)
|.|++.+|..|.-.+..--.. .+...++||.|+||+ ||+||+++ ++.+....+... ++ .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 468899888877666542111 111137999999999 99999999 665533222211 11 1111100
Q ss_pred cc-hHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC----
Q 001150 978 GE-GEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---- 1052 (1138)
Q Consensus 978 G~-~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---- 1052 (1138)
+. .-..-...+..|.. .|+|||||+.+ ......++.+.+++--..+.+. .-+.++.||||+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCC
Confidence 00 00000122334433 89999999987 3334445444444433334443 3357899999999864
Q ss_pred -------CCcHHHHhcCCceEE-ecCCCHH
Q 001150 1053 -------DLDEAVIRRLPRRLM-VNLPDAP 1074 (1138)
Q Consensus 1053 -------~Ld~aLlrRFd~~I~-v~lPd~e 1074 (1138)
.|++++++|||..+. ++.|+.+
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred CCCccccCCChHHhhheeeEEEecCCCChh
Confidence 889999999987655 3556543
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.30 E-value=1.7e-06 Score=94.20 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=31.8
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 430 TVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 430 ~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
...+.|||+||+| +++++||+|+|++.+.+++.++.
T Consensus 62 ~~~~~vLl~G~~G--tGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPH--SGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTT--SSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCC--CcHHHHHHHHHHHhCCCEEEEeC
Confidence 3456899999999 99999999999999999888765
No 170
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.21 E-value=1.5e-06 Score=91.65 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=78.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh--------C-CceEEEeccccccccc----------cchHH--HHHHHHHHH--hc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA--------G-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 993 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el--------g-~~fi~Id~seL~s~~i----------G~~E~--~I~~lF~~A--~k 993 (1138)
.-.|++|+||+|||++|.+++... | .+++..++.++....+ ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 357999999999999998875443 4 6666666655532221 11100 112233321 22
Q ss_pred cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCH
Q 001150 994 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDA 1073 (1138)
Q Consensus 994 ~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~ 1073 (1138)
...+||+|||++.+++.+.... +.. .++..+... ....+-||.+|+.+..|+..+++|+...+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~~-----rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KIP-----ENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CCC-----HHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccc--hhH-----HHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 3478999999999976542111 111 133333322 124556677788899999999999998888877543
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.21 E-value=1.3e-05 Score=89.73 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=45.0
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
+|++|-.. +..+..|...+-...+.. ...+.|||+||+| +++++||+++|+.++.+++.++.
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~G--tGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAG--LGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTT--SSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCC--CCHHHHHHHHHHHhCCCeEEecc
Confidence 57776444 777777766654332211 2344699999999 99999999999999988777665
No 172
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.19 E-value=1.6e-06 Score=79.80 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1072 DAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1072 d~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+.++|.+||+.++.+..+..++|+..||..|+||||+||.+||++|++.|+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999998899999999999999999999999999999999874
No 173
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.15 E-value=1.5e-06 Score=97.51 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=46.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCceEEEeccccccccccch-HHHHHHHHHHHhccCCeEEEEcCCccc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL~s~~iG~~-E~~I~~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
..+++|+||||||||+||.++|+++ +.+++.+.+++++..+.... ......++.... ...|||||||+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3689999999999999999999866 47888888877654332211 111112222222 3469999999654
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.9e-05 Score=94.48 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=52.4
Q ss_pred cccccccccchhHHHHHHHHHhhcc-CC-cccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 001150 392 SFENFPYYLSENTKNVLIAASYIHL-KH-KDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1138)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL-~~-~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1138)
+|+++-.. +..+..|....-... .+ ..+.+.+.+-....+.|||+||+| +++++||+|||++++..++-++.+.
T Consensus 37 ~~~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred CHHHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 46665443 666666666543211 11 122233333334568999999999 9999999999999999999998876
Q ss_pred ccC
Q 001150 470 LLG 472 (1138)
Q Consensus 470 ~~g 472 (1138)
+.+
T Consensus 113 ~~~ 115 (516)
T 1sxj_A 113 VRS 115 (516)
T ss_dssp CCC
T ss_pred cch
Confidence 654
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.13 E-value=1.5e-05 Score=88.80 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
.+.||||||+|.+-+ .+..+.|...|+..++++.+|+++|..+.
T Consensus 105 ~~~vliiDEi~~l~~--~~~~~~L~~~le~~~~~~~iI~~~n~~~~---------------------------------- 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL--AESQRHLRSFMEAYSSNCSIIITANNIDG---------------------------------- 148 (324)
T ss_dssp CEEEEEEESCCCGGG--HHHHHHHHHHHHHHGGGCEEEEEESSGGG----------------------------------
T ss_pred CCeEEEEECCcccCc--HHHHHHHHHHHHhCCCCcEEEEEeCCccc----------------------------------
Confidence 567999999998641 33556677777777788999998887642
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
++++|.+|| ..|.|+.|+.+++.+|++..+..
T Consensus 149 ---------l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 149 ---------IIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp ---------SCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ---------cCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH
Confidence 344577789 68999999999999888865544
No 176
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.09 E-value=1e-05 Score=81.22 Aligned_cols=80 Identities=18% Similarity=0.384 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhc------CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCcccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 715 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~------~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~ 715 (1138)
.+..+++.+... .+|.||||||+|.+.. +..++.+.|+..++. +++++|++++..+...
T Consensus 102 ~~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~----------- 166 (187)
T 2p65_A 102 RLKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQ----------- 166 (187)
T ss_dssp HHHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHH-----------
T ss_pred HHHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHH-----------
Confidence 455566555541 4789999999999762 236778888888754 7899999998764100
Q ss_pred ccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCC
Q 001150 716 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQ 764 (1138)
Q Consensus 716 r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd 764 (1138)
...++.+|.+||. .+.|++|+
T Consensus 167 ---------------------------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 167 ---------------------------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp ---------------------------HTTTCHHHHHHEE-EEECCSCC
T ss_pred ---------------------------HHhccHHHHHhcC-cccCCCCC
Confidence 0114778999995 69999885
No 177
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.08 E-value=6.3e-06 Score=80.32 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=65.2
Q ss_pred CCcceeeeCCeEEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeccCCCeeEccCCCEEE
Q 001150 136 QNSNVPICASIFTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1138)
Q Consensus 136 ~~~~~~i~~~~~tvGr~~-~cd~~l~~~~~s~~hcki~~~~~~~~~~~~led~s~nGt~VNg~~~gk~~~~~L~~gDeI~ 214 (1138)
..-.+++....|+||... .|||.|.|..||..||.|.....+ ++|. =+.|||||||+-+.-+. .|..|+.|.
T Consensus 15 ~G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt~vdG~~v~~~~--~L~~g~~l~ 87 (123)
T 4a0e_A 15 RGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPLLQEGLPVPLGT--LLRAGSCLE 87 (123)
T ss_dssp TTCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCCEETTEECCTTC--BCCTTSCEE
T ss_pred CCcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCEEECCEEccccc--ccCCCCEEE
Confidence 557899999999999999 999999999999999999876544 5666 77899999999988765 899999998
Q ss_pred Eeec
Q 001150 215 FGSL 218 (1138)
Q Consensus 215 f~~~ 218 (1138)
++..
T Consensus 88 lG~~ 91 (123)
T 4a0e_A 88 VGFL 91 (123)
T ss_dssp ETTE
T ss_pred EccE
Confidence 7544
No 178
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.07 E-value=5.5e-06 Score=87.95 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=72.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1016 (1138)
+++||+||||||||++|.++|+.+...++.+..+.. ..+ +..+. ...||+|||++.-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l~--~~kIiiLDEad~~--------- 115 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPLT--DTKVAMLDDATTT--------- 115 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGGT--TCSSEEEEEECHH---------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hcccC--CCCEEEEECCCch---------
Confidence 579999999999999999999998655443221100 000 01111 2359999999821
Q ss_pred HHHHHHHHHHHHHHhcCCC----ccCC-----CCEEEEEecCCC---CCCcHHHHhcCCceEEecC-------------C
Q 001150 1017 HEAMRKMKNEFMVNWDGLR----TKDT-----ERILVLAATNRP---FDLDEAVIRRLPRRLMVNL-------------P 1071 (1138)
Q Consensus 1017 ~~al~~il~~LL~~Ldgl~----~~~~-----~~VLVIaTTN~p---~~Ld~aLlrRFd~~I~v~l-------------P 1071 (1138)
..+.+...+...+++-. .+.. ...-+|.|||.. +..-..+.+|+ .++.|+. .
T Consensus 116 --~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~~p~~~~g~p~~~~ 192 (212)
T 1tue_A 116 --CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNAFPFDKNGNPVYEI 192 (212)
T ss_dssp --HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSCCCBCTTSCBSCCC
T ss_pred --hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCCCCCCCCCCeeEEe
Confidence 11222223344445531 0100 123566688863 33336788888 5666652 2
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 001150 1072 DAPNRAKILQVILAKEDL 1089 (1138)
Q Consensus 1072 d~eeR~eIL~~ll~k~~l 1089 (1138)
+.+....+|+.+.....+
T Consensus 193 ~~~~wk~ff~~~~~~l~l 210 (212)
T 1tue_A 193 NDKNWKCFFERTWSRLDL 210 (212)
T ss_dssp CHHHHHHHHHHHTGGGTC
T ss_pred CcchHHHHHHHHHHhcCC
Confidence 456777777777665543
No 179
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.98 E-value=3.6e-06 Score=76.23 Aligned_cols=54 Identities=26% Similarity=0.466 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1072 DAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1072 d~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
+.++|.+||+.++++..+..++|+..||..|+||||+||.++|++|++.++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999888889999999999999999999999999999988753
No 180
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.97 E-value=0.00013 Score=74.78 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
..+.||||||+|.+-. +..+.|...|+....++++|.+++..+.
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~~~~~~~--------------------------------- 144 (226)
T 2chg_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILSCNYVSR--------------------------------- 144 (226)
T ss_dssp CSCEEEEEETGGGSCH---HHHHHHHHHHHHTTTTEEEEEEESCGGG---------------------------------
T ss_pred cCceEEEEeChhhcCH---HHHHHHHHHHHhcCCCCeEEEEeCChhh---------------------------------
Confidence 5789999999998533 3455667777777778888888775431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
++++|.+||. .+.++.|+.++...+++..+.
T Consensus 145 ----------~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 145 ----------IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp ----------SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----------cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHH
Confidence 3556778885 899999999999988886553
No 181
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.93 E-value=1.8e-05 Score=87.07 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=68.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG 1015 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~ 1015 (1138)
.+++||+||||||||++|.+||+.++. +-.++... ... .|. ......|+++||....- .
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~--~~~~k~i~l~Ee~~~~~------d 162 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFN--DCVDKMVIWWEEGKMTA------K 162 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTG--GGSSCSEEEECSCCEET------T
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------ccc--cccccEEEEeccccchh------H
Confidence 468999999999999999999998654 22222211 000 111 11223567777776441 1
Q ss_pred hHHHHHHHHHHHHHHhcCCCc--cCCCCEEEEEecCC-C----------CCCcHHHHhcCCceEEec--------CCCHH
Q 001150 1016 EHEAMRKMKNEFMVNWDGLRT--KDTERILVLAATNR-P----------FDLDEAVIRRLPRRLMVN--------LPDAP 1074 (1138)
Q Consensus 1016 ~~~al~~il~~LL~~Ldgl~~--~~~~~VLVIaTTN~-p----------~~Ld~aLlrRFd~~I~v~--------lPd~e 1074 (1138)
....++.++.--...++.... ..-.+..+|.|||. + +...+.|.+|+ .++.|. ..+.+
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~lt~~ 241 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGKVTKQ 241 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCCCCHH
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCCCCHH
Confidence 122333322100001111100 01134556677775 1 25567899987 677776 57788
Q ss_pred HHHHHHHHH
Q 001150 1075 NRAKILQVI 1083 (1138)
Q Consensus 1075 eR~eIL~~l 1083 (1138)
+...+|+..
T Consensus 242 ~~~~f~~w~ 250 (267)
T 1u0j_A 242 EVKDFFRWA 250 (267)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888844
No 182
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.88 E-value=8e-05 Score=82.42 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=29.8
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
..+.|||+||+| +++++||+++|++++.+++.++.
T Consensus 37 ~~~~vll~G~~G--tGKT~la~~i~~~~~~~~~~~~~ 71 (324)
T 1hqc_A 37 PLEHLLLFGPPG--LGKTTLAHVIAHELGVNLRVTSG 71 (324)
T ss_dssp CCCCCEEECCTT--CCCHHHHHHHHHHHTCCEEEECT
T ss_pred CCCcEEEECCCC--CCHHHHHHHHHHHhCCCEEEEec
Confidence 346899999999 99999999999999877765543
No 183
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.87 E-value=3e-05 Score=108.28 Aligned_cols=139 Identities=21% Similarity=0.368 Sum_probs=89.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCceEEEeccccccccccchHHHHHHHHHHH----hc------------cCCeEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA----SK------------IAPSVI 999 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-g~~fi~Id~seL~s~~iG~~E~~I~~lF~~A----~k------------~~PsII 999 (1138)
+++||+||||||||+++..++..+ +.+++.++++.... ...+...++.. ++ ....||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998776655444 77778888766432 23333333321 10 112599
Q ss_pred EEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCc------cCCCCEEEEEecCCC-----CCCcHHHHhcCCceEEe
Q 001150 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATNRP-----FDLDEAVIRRLPRRLMV 1068 (1138)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~------~~~~~VLVIaTTN~p-----~~Ld~aLlrRFd~~I~v 1068 (1138)
|||||+.- ..+.-+.+. ...++.+++.. .++.. ..-.++.+|||+|.+ ..|++.|+||| .++.+
T Consensus 1379 FiDDiNmp--~~D~yGtQ~-~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINLP--STDKYGTQR-VITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLV 1453 (3245)
T ss_dssp EETTTTCC--CCCTTSCCH-HHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEEC
T ss_pred EecccCCC--Ccccccccc-HHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEe
Confidence 99999842 222112222 22334444432 11111 112568899999987 57999999999 77999
Q ss_pred cCCCHHHHHHHHHHHHhh
Q 001150 1069 NLPDAPNRAKILQVILAK 1086 (1138)
Q Consensus 1069 ~lPd~eeR~eIL~~ll~k 1086 (1138)
+.|+.++...|+..++..
T Consensus 1454 ~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998887654
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.83 E-value=0.0002 Score=80.48 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcC--CcchhhHHHHHHhcC--CCcEEEEeecccCCCccccCCCCCcccccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--NSDSYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKSHPGGLLFTKF 717 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~--~~~~~~~lk~~L~~l--~g~VvvIGstt~~d~~d~k~~~~~~~l~r~ 717 (1138)
+++.+++.+.. ...|+||||||+|.+... ..+....+...+... +.++.+|++++..+..
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~-------------- 180 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFV-------------- 180 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTS--------------
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchH--------------
Confidence 46666766654 245999999999997654 344444444444333 6789999999977410
Q ss_pred CCchhhhccccCCCccccccccCCCchHHHHHHhhhCCC-eEEEeCCCHHHHHHHHHHhhhh
Q 001150 718 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPN-KVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 718 gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~-~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
.+ ++..+.+||.. .+.+++|+.++...+++..+..
T Consensus 181 ----------------~~----------l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 181 ----------------EN----------LEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp ----------------SS----------SCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred ----------------hh----------hCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 01 35567778875 8899999999999999977643
No 185
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.83 E-value=0.00011 Score=81.97 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=30.0
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
+.|||+|||| +++++||||||+.++.++..+..
T Consensus 47 ~~vll~G~pG--tGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPG--LAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCC--HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCeEEEec
Confidence 4899999999 99999999999999998877764
No 186
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.81 E-value=0.00014 Score=79.90 Aligned_cols=107 Identities=9% Similarity=-0.013 Sum_probs=62.4
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCC-----------CcEEEEeecccCCC-ccccCCCCCccccccCCchhh
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLP-----------DKVIVIGSHTHTDN-RKEKSHPGGLLFTKFGSNQTA 723 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~-----------g~VvvIGstt~~d~-~d~k~~~~~~~l~r~gr~~~~ 723 (1138)
....||||||||++ ..+..+.|...|+... .++++|+++|.... +.... +. -..+.. -..
T Consensus 118 ~~~~vl~lDEi~~l---~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~--~~--~~~~~~-l~~ 189 (311)
T 4fcw_A 118 RPYSVILFDAIEKA---HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGL--QK--GWPYER-IRD 189 (311)
T ss_dssp CSSEEEEEETGGGS---CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTT--TS--CCCSST-HHH
T ss_pred CCCeEEEEeChhhc---CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhh--cc--cccHHH-HHH
Confidence 45579999999985 3445556666664432 27779999887311 00000 00 000000 000
Q ss_pred hccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhh
Q 001150 724 LLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETL 783 (1138)
Q Consensus 724 l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~~~e~l 783 (1138)
+++.+ .....+.+|..||+..+.+.+|+.+++..|++..+.+..+.+
T Consensus 190 ~~~~~-------------~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 190 EVFKV-------------LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp HTHHH-------------HHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHH-------------HHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000 011246778899999999999999999999998877655443
No 187
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.78 E-value=0.00012 Score=102.29 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=91.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCcccccCCCCcch
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 1016 (1138)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+.++|.-+.+. .+..++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 35689999999999999999999999999999987432 34567777766653 588999999987 2222
Q ss_pred HHHHHH----HHHHHHHH-----hc-CCCccCCCCEEEEEecCC----CCCCcHHHHhcCCceEEecCCCHHHHHHHH
Q 001150 1017 HEAMRK----MKNEFMVN-----WD-GLRTKDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1138)
Q Consensus 1017 ~~al~~----il~~LL~~-----Ld-gl~~~~~~~VLVIaTTN~----p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL 1080 (1138)
-.+... +...+... +. |-...-...+.|++|.|. ...|++.++.|| +.|.+..|+.+...+|+
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 222111 11111111 11 212222356788889984 469999999999 78999999998887775
No 188
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.78 E-value=7.4e-05 Score=88.05 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=55.0
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
..+.||||||||.+-.... +.|...|+. +.|++||+||....
T Consensus 105 ~~~~iLfIDEI~~l~~~~q---~~LL~~le~--~~v~lI~att~n~~--------------------------------- 146 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQ---DAFLPHIED--GTITFIGATTENPS--------------------------------- 146 (447)
T ss_dssp TCCEEEEEETTTCC---------CCHHHHHT--TSCEEEEEESSCGG---------------------------------
T ss_pred CCCcEEEEeChhhhCHHHH---HHHHHHHhc--CceEEEecCCCCcc---------------------------------
Confidence 5688999999998643322 234556654 88999999985431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
.+++++|..|+ ..+.+..|+.++...+++..+.+
T Consensus 147 --------~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 147 --------FELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp --------GSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHC
T ss_pred --------cccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHH
Confidence 12567888999 68999999999999999877654
No 189
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0002 Score=80.80 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCch
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~ 721 (1138)
.++.+|+-+.. .+..++||||||+|.+. ++.-+|+.+. ....-.++++|||..|..|..+.
T Consensus 118 ~L~~~f~~~~~-~~~~~~ii~lDE~d~l~-~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d~~~~---------------- 178 (318)
T 3te6_A 118 ALNFYITNVPK-AKKRKTLILIQNPENLL-SEKILQYFEK-WISSKNSKLSIICVGGHNVTIRE---------------- 178 (318)
T ss_dssp HHHHHHHHSCG-GGSCEEEEEEECCSSSC-CTHHHHHHHH-HHHCSSCCEEEEEECCSSCCCHH----------------
T ss_pred HHHHHHHHhhh-ccCCceEEEEecHHHhh-cchHHHHHHh-cccccCCcEEEEEEecCcccchh----------------
Confidence 56666665421 24689999999999987 5544454443 22334578999999888763111
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCC-CeEEEeCCCHHHHHHHHHHhhhh
Q 001150 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP-NKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 722 ~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~-~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
.+++++..||. ..|.+++.+.++...|++..+..
T Consensus 179 -----------------------~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 179 -----------------------QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -----------------------HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----------------------hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 13555677785 68999999999999999987754
No 190
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.74 E-value=4.6e-05 Score=102.81 Aligned_cols=77 Identities=26% Similarity=0.290 Sum_probs=59.3
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc----ccc------------ccchHHHHHHHHHHHhc
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKW------------FGEGEKYVKAVFSLASK 993 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~----s~~------------iG~~E~~I~~lF~~A~k 993 (1138)
..+...++|+||||||||+||.++|.+. |..+..++..... ... ....+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 3455789999999999999999998886 5667777765431 111 22446677888888888
Q ss_pred cCCeEEEEcCCccccc
Q 001150 994 IAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 994 ~~PsIIfIDEID~L~~ 1009 (1138)
.+|++||||+|+.+.+
T Consensus 1504 ~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred CCCCEEEEcChhHhcc
Confidence 9999999999998875
No 191
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.69 E-value=0.00046 Score=77.90 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCC-cchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGN-SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSN 720 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~-~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~ 720 (1138)
+++.+++.+.. ..+ ||||||+|.+.... .+. +...|.....++.||++++..+.
T Consensus 122 ~~~~l~~~l~~---~~~-vlilDEi~~l~~~~~~~~---~l~~l~~~~~~~~iI~~t~~~~~------------------ 176 (384)
T 2qby_B 122 YIDKIKNGTRN---IRA-IIYLDEVDTLVKRRGGDI---VLYQLLRSDANISVIMISNDINV------------------ 176 (384)
T ss_dssp HHHHHHHHHSS---SCE-EEEEETTHHHHHSTTSHH---HHHHHHTSSSCEEEEEECSSTTT------------------
T ss_pred HHHHHHHHhcc---CCC-EEEEECHHHhccCCCCce---eHHHHhcCCcceEEEEEECCCch------------------
Confidence 56677776655 455 99999999976542 333 12223222278999999887641
Q ss_pred hhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 721 QTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 721 ~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
..+ ++.++.+||...+.+++|+.++..++++..+.
T Consensus 177 ------------~~~----------l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 177 ------------RDY----------MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp ------------TTT----------SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred ------------Hhh----------hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 011 35667788988999999999999999997664
No 192
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.68 E-value=6.2e-06 Score=74.75 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 001150 1074 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1138)
Q Consensus 1074 eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ei 1125 (1138)
++|.+||+.++++..+..++|+..||..|+||||+||.++|++|++.++++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~ 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4789999999998887788999999999999999999999999999999863
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.66 E-value=0.00012 Score=82.55 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=57.1
Q ss_pred CeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 001150 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 737 (1138)
Q Consensus 658 p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~ 737 (1138)
|.||||||||.+- .+..+.|...|+....++++|++.....- .+. .-.
T Consensus 190 ~~vl~IDEi~~l~---~~~~~~L~~~le~~~~~~~ii~t~~~~~~--------------i~~--------t~~------- 237 (368)
T 3uk6_A 190 PGVLFIDEVHMLD---IESFSFLNRALESDMAPVLIMATNRGITR--------------IRG--------TSY------- 237 (368)
T ss_dssp BCEEEEESGGGSB---HHHHHHHHHHTTCTTCCEEEEEESCSEEE--------------CBT--------SSC-------
T ss_pred CceEEEhhccccC---hHHHHHHHHHhhCcCCCeeeeecccceee--------------eec--------cCC-------
Confidence 7899999999853 45666677777777778888777532100 000 000
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 738 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 738 ~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
.....++.+|.+|| ..+.++.|+.+++..+|+..+..
T Consensus 238 ---~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 238 ---QSPHGIPIDLLDRL-LIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ---EEETTCCHHHHTTE-EEEEECCCCHHHHHHHHHHHHHH
T ss_pred ---CCcccCCHHHHhhc-cEEEecCCCHHHHHHHHHHHHHH
Confidence 00112567899999 56999999999999999976643
No 194
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.65 E-value=0.00046 Score=77.59 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=99.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CC-ceEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEcCCcc-c
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDS-M 1007 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~-~fi~Id~seL~s~~iG~~E~~I~~lF~~A~----k~~PsIIfIDEID~-L 1007 (1138)
+.+||+||+|.||++.++++++.+ ++ ++..+... + +..++.+++.+. .....||+|||++. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 579999999999999999998876 33 22222111 1 123444554443 23568999999997 5
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC-----CCCCcHHHHhcCCceEEecCCCHHHHHHHHHH
Q 001150 1008 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 1082 (1138)
Q Consensus 1008 ~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~-----p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ 1082 (1138)
- . ...+.|+..+...+ ...++|+.+++. ...+-+++.+|+ .++.+..++..+....++.
T Consensus 90 ~-----~-------~~~~aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 90 N-----A-------AINEQLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp C-----T-------THHHHHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHH
T ss_pred C-----h-------HHHHHHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHH
Confidence 2 1 12334455555432 133444444431 234567888888 7899999999999999999
Q ss_pred HHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001150 1083 ILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1138)
Q Consensus 1083 ll~k~~l~-~dvdl~~LA~~teGySgaDL~~L~~~Aa~ 1119 (1138)
.+...++. ++..+..|+..+.| +.+++.+.++..+.
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 99888765 33446677777765 44455555554443
No 195
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.60 E-value=0.00036 Score=72.02 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCce
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANF 964 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~f 964 (1138)
.+.|.||+|+|||+|++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999986544
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.51 E-value=0.0015 Score=67.28 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=56.4
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
.+|.||||||+|.+ ..+..+.|...|+..+.++++|.+++..+.
T Consensus 125 ~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~--------------------------------- 168 (250)
T 1njg_A 125 GRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTDPQK--------------------------------- 168 (250)
T ss_dssp SSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEESCGGG---------------------------------
T ss_pred CCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeCChHh---------------------------------
Confidence 56899999999984 234556677777777788888888876431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
++.++.+|+ ..+.++.|+.++..++++..+.
T Consensus 169 ----------~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 169 ----------LPVTILSRC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp ----------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHH
Confidence 234566666 7899999999999999886653
No 197
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.50 E-value=0.00013 Score=79.04 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=50.4
Q ss_pred ceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecC--CceEEEEEEeC-CCc-eEEcCeeccCCCeeEcc-CCCEE
Q 001150 139 NVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSE--GSAVAMVESIG-SKG-LQVNGKNLKKNTSCELR-SGDEV 213 (1138)
Q Consensus 139 ~~~i~~~~~tvGr~~~cd~~l~~~~~s~~hcki~~~~~~--~~~~~~led~s-~nG-t~VNg~~~gk~~~~~L~-~gDeI 213 (1138)
.+++.+..+||||...|||+|.+. . + -.+.+-..+ +. .+|+|++ +|| |||||+++... +.|+ .||+|
T Consensus 86 ~y~~~~~~itIG~~~~~dI~l~~~-~-~--~~~~~~~~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I 157 (238)
T 1wv3_A 86 AYPSIQDTMTIGPNAYDDMVIQSL-M-N--AIIIKDFQSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHI 157 (238)
T ss_dssp ECCSSCSEEEEESSTTSSEECTTC-S-S--CEEEECGGGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEE
T ss_pred EEecCCceEEEeCCCCCeEEeCCC-e-e--EEEEecccCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEE
Confidence 344555599999999999999988 3 2 233332111 23 4799997 799 59999999543 4799 99999
Q ss_pred EE
Q 001150 214 VF 215 (1138)
Q Consensus 214 ~f 215 (1138)
.|
T Consensus 158 ~i 159 (238)
T 1wv3_A 158 YV 159 (238)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.46 E-value=0.0002 Score=79.77 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHh---CCeEEEeecccc
Q 001150 431 VNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSL 470 (1138)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~---~a~ll~~d~~~~ 470 (1138)
..+.|||+||+| +++++||+|+|+++ +.+++.++...+
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 346799999999 99999999999999 888888876433
No 199
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.40 E-value=0.00089 Score=69.91 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=23.9
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1138)
.+.|||+||+| .++++||++||++++
T Consensus 52 ~~~~ll~G~~G--~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVK--SGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 46899999999 999999999998876
No 200
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=0.001 Score=72.98 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=56.0
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
..+.||+|||+|.+-. +..+.|...|+..++++++|.+++..+.
T Consensus 106 ~~~~viiiDe~~~l~~---~~~~~L~~~le~~~~~~~~il~~~~~~~--------------------------------- 149 (323)
T 1sxj_B 106 GKHKIVILDEADSMTA---GAQQALRRTMELYSNSTRFAFACNQSNK--------------------------------- 149 (323)
T ss_dssp TCCEEEEEESGGGSCH---HHHHTTHHHHHHTTTTEEEEEEESCGGG---------------------------------
T ss_pred CCceEEEEECcccCCH---HHHHHHHHHHhccCCCceEEEEeCChhh---------------------------------
Confidence 3488999999998532 3455667777777788888888765421
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
+.+.|..|+ ..+.+..|+.++...+++..+.
T Consensus 150 ----------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 150 ----------IIEPLQSQC-AILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp ----------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ----------chhHHHhhc-eEEeecCCCHHHHHHHHHHHHH
Confidence 355677778 5999999999999999886653
No 201
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.38 E-value=0.00055 Score=76.40 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=37.9
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCC
Q 001150 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 460 (1138)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a 460 (1138)
..+|++|... ++.+..|..++..+ ..+.|||+||+| +++++||||||+.++-
T Consensus 20 ~~~f~~i~G~--~~~~~~l~~~~~~~---------------~~~~vLl~G~~G--tGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQ--EDMKLALLLTAVDP---------------GIGGVLVFGDRG--TGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSC--HHHHHHHHHHHHCG---------------GGCCEEEECCGG--GCTTHHHHHHHHHSCC
T ss_pred CCCchhccCh--HHHHHHHHHHhhCC---------------CCceEEEECCCC--ccHHHHHHHHHHhCcc
Confidence 3578886544 66776665554421 123499999999 9999999999999874
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.37 E-value=0.0029 Score=70.78 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCC-cchhhHHHHHHhcC-CCcEEEEeecccCCCccccCCCCCccccccCC
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGN-SDSYSTFKSRLEKL-PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGS 719 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~-~~~~~~lk~~L~~l-~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr 719 (1138)
+++.+++.+.. ...|.||+|||++.+.... .+....+...++.+ ..++.+|++++..+.
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~----------------- 175 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF----------------- 175 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG-----------------
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh-----------------
Confidence 46666776665 2349999999999987653 56666666666543 458999998886541
Q ss_pred chhhhccccCCCccccccccCCCchHHHHHHhhhCC-CeEEEeCCCHHHHHHHHHHhhh
Q 001150 720 NQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP-NKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 720 ~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~-~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
.+ + ++..+.+||. ..+.+++++.++..++|+..+.
T Consensus 176 -----~~--------~----------~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 176 -----VD--------L----------LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp -----GG--------G----------CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred -----Hh--------h----------hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 00 0 2334555664 4899999999999999987653
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.37 E-value=0.00018 Score=84.37 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=55.0
Q ss_pred CCeEEEEcchhhhhc---CCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 001150 657 CPFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 733 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~---~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f 733 (1138)
.+.|||||||+.+.. .+.++++.+....+ .|..+||++++.+.. +
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~------------------------------l 241 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQK------------------------------L 241 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESSCGGG------------------------------C
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECCCHHH------------------------------H
Confidence 688999999998664 23445555544442 467888877654421 0
Q ss_pred ccccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhh
Q 001150 734 GRLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 734 ~r~~~~~~~~~~~d~~l~rRF~--~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
.. ++++|..||. ..+.|++|+.++|..||+..+.
T Consensus 242 ~~----------l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 242 SE----------FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp SS----------CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HH----------HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 11 3566777885 6899999999999999997664
No 204
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.32 E-value=0.0003 Score=77.08 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
..+.||+|||+|.+-. +..+.|...|+..+.++++|.+++..+.
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~L~~~le~~~~~~~~i~~~~~~~~--------------------------------- 144 (319)
T 2chq_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILSCNYVSR--------------------------------- 144 (319)
T ss_dssp CCCEEEEEETGGGSCH---HHHHTTGGGTSSSSSSEEEEEEESCGGG---------------------------------
T ss_pred CCceEEEEeCCCcCCH---HHHHHHHHHHHhcCCCCeEEEEeCChhh---------------------------------
Confidence 4588999999998532 3445566666766788899988875431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
+.++|..|+ ..|.+..|+.++...++...+.
T Consensus 145 ----------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 145 ----------IIEPIQSRC-AVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp ----------SCHHHHTTC-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ----------cchHHHhhC-eEEEecCCCHHHHHHHHHHHHH
Confidence 356678888 6999999999999888876553
No 205
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.30 E-value=0.0024 Score=68.70 Aligned_cols=162 Identities=20% Similarity=0.283 Sum_probs=89.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc--------cccccc----------cc--hHHHHHHHHHHHhc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS--------ITSKWF----------GE--GEKYVKAVFSLASK 993 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se--------L~s~~i----------G~--~E~~I~~lF~~A~k 993 (1138)
..|++.|++|+|||+++-.+|..+ |..++.++... +..... +. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 469999999999999999999887 77776655521 111110 00 1123333322
Q ss_pred cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCC------------------CCCCc
Q 001150 994 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------------PFDLD 1055 (1138)
Q Consensus 994 ~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~------------------p~~Ld 1055 (1138)
..|.+|+|||+-..-... . ........+.. + + ...+=+++|+|. .+.++
T Consensus 83 ~~pdlvIVDElG~~~~~~-~-r~~~~~qDV~~-~---l-------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG-S-RHTKRWQDIQE-L---L-------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCTT-C-SSSBHHHHHHH-H---H-------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCccc-c-hhHHHHHHHHH-H---H-------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 368999999987541110 0 00111222211 1 1 133456677762 25667
Q ss_pred HHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCC-CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001150 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL-SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1138)
Q Consensus 1056 ~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l-~~dvdl~~LA~~teGySgaDL~~L~~~Aa~~ai~ 1123 (1138)
+.++.+.+.+..++.|..+ +++. +...++ .++..-..+.+. |+...|..|-+.|..+...
T Consensus 150 d~~~~~a~~v~lvD~~p~~----l~~r-l~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~a~ 210 (228)
T 2r8r_A 150 DWVLQEAFDLVLIDLPPRE----LLER-LRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTAAA 210 (228)
T ss_dssp HHHHHTCSEEEEBCCCHHH----HHHH-HHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred cHHHhhCCeEEEecCCHHH----HHHH-HHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHHHH
Confidence 8888888888888888765 3333 333333 333333444444 5666666665555544433
No 206
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.20 E-value=0.00015 Score=66.44 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=55.7
Q ss_pred EeCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCC
Q 001150 760 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEA 839 (1138)
Q Consensus 760 I~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~ 839 (1138)
-.+|+.++|.+||+.++.+ +....+++....+-.+.||+|+||..+|.++.+.. + ..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~----~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~a-----------l----r~---- 64 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRK----MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYA-----------L----RE---- 64 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTT----SEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHH-----------H----HT----
T ss_pred CCCcCHHHHHHHHHHHHcC----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHH-----------H----HH----
Confidence 3689999999999999865 34456777777788899999999999999765521 1 11
Q ss_pred CCcccccccchhhhhhHhHH
Q 001150 840 DPDARLVLSCESIQYGIGIF 859 (1138)
Q Consensus 840 ~~~~kl~l~~edl~~al~~l 859 (1138)
....|+.++|..++..+
T Consensus 65 ---~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 65 ---RRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp ---TCSEECHHHHHHHHHHH
T ss_pred ---cCCCCCHHHHHHHHHHH
Confidence 13568888888777633
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.19 E-value=0.0021 Score=66.68 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~se 971 (1138)
+..-++|+||+|+|||+|+..+|...+.+++.++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3356899999999999999999986677888887654
No 208
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.19 E-value=0.0001 Score=65.90 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=55.2
Q ss_pred eCCCHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCC
Q 001150 761 HMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD 840 (1138)
Q Consensus 761 ~lPd~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~ 840 (1138)
++|+.++|.+||+.++.+ +....+++....+-.+.||+|+||..+|.++.+. ++..
T Consensus 1 plPd~~~R~~Il~~~l~~----~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~---------------a~~~----- 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK----MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY---------------ALRE----- 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT----SEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHH---------------HHHT-----
T ss_pred CcCCHHHHHHHHHHHhcC----CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHH---------------HHHh-----
Confidence 589999999999998865 4445677788888899999999999999876542 1111
Q ss_pred CcccccccchhhhhhHhHH
Q 001150 841 PDARLVLSCESIQYGIGIF 859 (1138)
Q Consensus 841 ~~~kl~l~~edl~~al~~l 859 (1138)
....|+.++|..++..+
T Consensus 57 --~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 57 --RRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp --TCSEECHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHH
Confidence 23568888888877643
No 209
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.0015 Score=71.79 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=55.5
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
..+.||+|||+|.+- .+..+.|...|+..+.++++|.+++..+.
T Consensus 109 ~~~~vliiDe~~~l~---~~~~~~L~~~le~~~~~~~~i~~~~~~~~--------------------------------- 152 (327)
T 1iqp_A 109 ASFKIIFLDEADALT---QDAQQALRRTMEMFSSNVRFILSCNYSSK--------------------------------- 152 (327)
T ss_dssp CSCEEEEEETGGGSC---HHHHHHHHHHHHHTTTTEEEEEEESCGGG---------------------------------
T ss_pred CCCeEEEEeCCCcCC---HHHHHHHHHHHHhcCCCCeEEEEeCCccc---------------------------------
Confidence 457899999999852 34556677778877788888888775431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
+.++|..|+ ..+.+..|+.++...+++..+
T Consensus 153 ----------l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 153 ----------IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp ----------SCHHHHHTE-EEEECCCCCHHHHHHHHHHHH
T ss_pred ----------cCHHHHhhC-cEEEecCCCHHHHHHHHHHHH
Confidence 345677788 589999999998888887554
No 210
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.13 E-value=0.0034 Score=70.53 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=63.6
Q ss_pred HHHHHHHHhhcc-cCCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCch
Q 001150 643 INTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1138)
Q Consensus 643 i~~L~ev~~~~~-~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~ 721 (1138)
++.+++.+.... ..++.||+|||+|.+ ..+..+.|...|+..++++++|++++..+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~vliiDe~~~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~------------------- 161 (373)
T 1jr3_A 104 TRDLLDNVQYAPARGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTDPQK------------------- 161 (373)
T ss_dssp HHHHHHHTTSCCSSSSSEEEEEECGGGS---CHHHHHHHHHHHHSCCSSEEEEEEESCGGG-------------------
T ss_pred HHHHHHHHhhccccCCeEEEEEECcchh---cHHHHHHHHHHHhcCCCceEEEEEeCChHh-------------------
Confidence 344444444321 245899999999985 235567778888888889999999875431
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 722 ~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+.+.|..|+ ..+.+..|+.++...+++..+.+
T Consensus 162 ------------------------l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 162 ------------------------LPVTILSRC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp ------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------------------------CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 244566677 89999999999999988866543
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.11 E-value=0.0048 Score=66.54 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC---CeEEEeecccc
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFG---AKLLIFDSHSL 470 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~---a~ll~~d~~~~ 470 (1138)
..-|||+||+| .++++||||||++.. .+++.++.+.+
T Consensus 29 ~~~vll~G~~G--tGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERG--TGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTT--SCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCC--CcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 36899999999 999999999999885 67888887665
No 212
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.10 E-value=0.0017 Score=67.67 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
.-++|+||+|+|||+|++.+|..+ +..++.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 468999999999999999999665 556665553
No 213
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.06 E-value=0.0082 Score=72.15 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=97.5
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHH-----hCC--ceEEEecccc
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----AGA--NFINISMSSI 972 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~e-----lg~--~fi~Id~seL 972 (1138)
...++|.+...+.|.+.+... ....+-++|+|++|+|||+||..+++. -.+ .++.++....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 346789999999988887521 012256899999999999999999742 222 2444443221
Q ss_pred -----ccc------ccc-----------chHHHHHHHHHHHh-ccCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 973 -----TSK------WFG-----------EGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 973 -----~s~------~iG-----------~~E~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
... ..+ ..+.....+..... +..+.+|+||+++.. . .+.
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~--------~l~ 252 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W--------VLK 252 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H--------HHH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H--------HHH
Confidence 000 000 01112222222222 236899999999742 1 111
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEec---CCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCc
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVN---LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYS 1106 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~---lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGyS 1106 (1138)
.+ .....||.||........ . + ...+.+. ..+.++-.++|...+.............|++.+.|..
T Consensus 253 ---~l----~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 253 ---AF----DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp ---TT----CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred ---Hh----cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 12 134567777765432111 0 0 2334443 5788898999988775321112345788999998854
Q ss_pred HHHHHHHHH
Q 001150 1107 GSDLKNLCV 1115 (1138)
Q Consensus 1107 gaDL~~L~~ 1115 (1138)
-.|+.+..
T Consensus 322 -Lal~~~a~ 329 (591)
T 1z6t_A 322 -LVVSLIGA 329 (591)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44555443
No 214
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.0041 Score=69.29 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
.+-||||||+|.+-. +..+.|...|+..+.++.+|.+++..+.
T Consensus 133 ~~~vliiDE~~~l~~---~~~~~Ll~~le~~~~~~~~il~~~~~~~---------------------------------- 175 (353)
T 1sxj_D 133 PYKIIILDEADSMTA---DAQSALRRTMETYSGVTRFCLICNYVTR---------------------------------- 175 (353)
T ss_dssp SCEEEEETTGGGSCH---HHHHHHHHHHHHTTTTEEEEEEESCGGG----------------------------------
T ss_pred CceEEEEECCCccCH---HHHHHHHHHHHhcCCCceEEEEeCchhh----------------------------------
Confidence 457999999998543 3345666777777776666666665431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
++++|.+|+ ..+.+..|+.++...+++..+
T Consensus 176 ---------l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 176 ---------IIDPLASQC-SKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp ---------SCHHHHHHS-EEEECCCCCHHHHHHHHHHHH
T ss_pred ---------CcchhhccC-ceEEeCCCCHHHHHHHHHHHH
Confidence 356788888 589999999999999888654
No 215
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.05 E-value=0.002 Score=74.10 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=50.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccc----c------------cchHHHHHHHHHHHhccC
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----F------------GEGEKYVKAVFSLASKIA 995 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~----i------------G~~E~~I~~lF~~A~k~~ 995 (1138)
+..-++|+||||+|||+||..+|..+ +.+++.++...-...+ . ...+..+..+...++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 33568999999999999999998765 6788888765421111 0 112333333334444567
Q ss_pred CeEEEEcCCccccc
Q 001150 996 PSVIFVDEVDSMLG 1009 (1138)
Q Consensus 996 PsIIfIDEID~L~~ 1009 (1138)
+.+||||.+..|..
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 89999999999974
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.98 E-value=0.0022 Score=73.42 Aligned_cols=75 Identities=25% Similarity=0.264 Sum_probs=50.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc----------------cccchHHHHHHHHHHHhccC
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKIA 995 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~----------------~iG~~E~~I~~lF~~A~k~~ 995 (1138)
+..-++|+||||+|||+|+.++|..+ +..++.++....... .....+..+..+...++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 33568999999999999999999875 677777876542110 01112233333333344567
Q ss_pred CeEEEEcCCccccc
Q 001150 996 PSVIFVDEVDSMLG 1009 (1138)
Q Consensus 996 PsIIfIDEID~L~~ 1009 (1138)
+.+|+||.+..+++
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 89999999998874
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.94 E-value=0.0026 Score=67.05 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=48.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH--h-------CCceEEEecccccc--------ccccc----------------hHH-
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE--A-------GANFINISMSSITS--------KWFGE----------------GEK- 982 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e--l-------g~~fi~Id~seL~s--------~~iG~----------------~E~- 982 (1138)
.-++|+||+|+|||+|++.+|.. + +...+.++...... ..++. .+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQ 104 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHH
Confidence 56899999999999999999985 2 45677777654100 00110 111
Q ss_pred --HHHHHHHHHhccCCeEEEEcCCcccccC
Q 001150 983 --YVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 983 --~I~~lF~~A~k~~PsIIfIDEID~L~~~ 1010 (1138)
.+..+...+....|.+|+||++..++..
T Consensus 105 ~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 105 TQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1223444455568999999999988643
No 218
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.91 E-value=0.0048 Score=69.47 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcCCcchhhHHHHHHhcCC----CcEEEEeecccCCCccccCCCCCcccccc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLP----DKVIVIGSHTHTDNRKEKSHPGGLLFTKF 717 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~----g~VvvIGstt~~d~~d~k~~~~~~~l~r~ 717 (1138)
+++.+.+.+.. ..+|.||||||++.+ ..+....|...++..+ .++.||++++..+.
T Consensus 112 ~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~--------------- 171 (389)
T 1fnn_A 112 FLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV--------------- 171 (389)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH---------------
T ss_pred HHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH---------------
Confidence 45556666554 356999999999986 4555556655664433 48888888775531
Q ss_pred CCchhhhccccCCCccccccccCCCchHHHHHHhhhCCC-eEEEeCCCHHHHHHHHHHhhh
Q 001150 718 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPN-KVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 718 gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~-~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
.+ + ++..+.+||.. .+.+++++.++...+++..+.
T Consensus 172 -------~~--------~----------l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 172 -------LN--------N----------LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp -------HH--------T----------SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred -------HH--------H----------hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 00 0 24456667754 799999999999999986654
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.91 E-value=0.0034 Score=71.56 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=50.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc----ccc------------chHHHHHHHHHHHhccC
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 995 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~----~iG------------~~E~~I~~lF~~A~k~~ 995 (1138)
+..-++|+||||+|||+||..+|..+ +..++.++...-... ..| ..+..+..+...++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 33568999999999999999998765 667777776432111 111 12233333334445667
Q ss_pred CeEEEEcCCccccc
Q 001150 996 PSVIFVDEVDSMLG 1009 (1138)
Q Consensus 996 PsIIfIDEID~L~~ 1009 (1138)
|.+|+||++..+..
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 99999999999863
No 220
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.88 E-value=0.00029 Score=81.30 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=42.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCceEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcCCccccc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL~s~~iG~~E~~I~~lF~~A~k~~PsIIfIDEID~L~~ 1009 (1138)
+...++|+||+|+|||+|+++|+..++..++.+..+.- . ....+. .-.+..++++||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHH
Confidence 34679999999999999999999998776655332221 0 001111 222446789999998764
No 221
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.83 E-value=0.0018 Score=65.23 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
.-|+|+|+||+|||++|++||..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4689999999999999999999999998877654
No 222
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.74 E-value=0.0015 Score=67.61 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=58.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc--------ccccccccc-----hHHHHHHHHHHHhccCCeEEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGE-----GEKYVKAVFSLASKIAPSVIFV 1001 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s--------eL~s~~iG~-----~E~~I~~lF~~A~k~~PsIIfI 1001 (1138)
-++++||+|+|||+++..++..+ +..++.+... .+.+. .|. .......++..+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~-~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSH-SGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEec-CCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 47899999999999987777654 5554443211 00000 000 0001122332222 24689999
Q ss_pred cCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEec-C---CCCCCcHHHHhcCCceEEec
Q 001150 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-N---RPFDLDEAVIRRLPRRLMVN 1069 (1138)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTT-N---~p~~Ld~aLlrRFd~~I~v~ 1069 (1138)
||+..+- +. ++..+....+. +..|++.|.+ + .+....+.++.+.+.+..+.
T Consensus 83 DE~Q~~~-----~~-------~~~~l~~l~~~-----~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 83 DEVQFFN-----PS-------LFEVVKDLLDR-----GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp CCGGGSC-----TT-------HHHHHHHHHHT-----TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred ECcccCC-----HH-------HHHHHHHHHHC-----CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 9998761 11 11222222222 2334444443 3 34555677888877666654
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.001 Score=67.59 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=29.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
..|+|+|++|+|||++|++||..++++|+..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999888654
No 224
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.66 E-value=0.016 Score=75.02 Aligned_cols=175 Identities=11% Similarity=0.056 Sum_probs=100.1
Q ss_pred cccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh---C--C--ceEEEecccc
Q 001150 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--A--NFINISMSSI 972 (1138)
Q Consensus 900 fdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el---g--~--~fi~Id~seL 972 (1138)
...++|.+...+.|.+.+... ....+-+.|+|+.|+|||+||+.+++.. . + .++.++.+..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 346789999999998887531 1122468899999999999999998652 1 2 2334443331
Q ss_pred c------------ccc---------ccchHHHHHHHHHHHhc--cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHH
Q 001150 973 T------------SKW---------FGEGEKYVKAVFSLASK--IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1138)
Q Consensus 973 ~------------s~~---------iG~~E~~I~~lF~~A~k--~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~ 1029 (1138)
. ... .......+...+..... .++.+|+||+++.. .
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~----------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------W----------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------H-----------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------H-----------
Confidence 0 000 00111122222222222 23789999999843 0
Q ss_pred HhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecC-CCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHH
Q 001150 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL-PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS 1108 (1138)
Q Consensus 1030 ~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~l-Pd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~teGySga 1108 (1138)
.++.+ .....||.||..+...... ......+.+.. .+.++-.++|........-.......+|++.+.|.. -
T Consensus 250 ~~~~~----~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP-L 322 (1249)
T 3sfz_A 250 VLKAF----DNQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP-L 322 (1249)
T ss_dssp HHTTT----CSSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH-H
T ss_pred HHHhh----cCCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH-H
Confidence 12222 1334677788765433110 11234577775 888888899987764332222344788999998754 3
Q ss_pred HHHHHH
Q 001150 1109 DLKNLC 1114 (1138)
Q Consensus 1109 DL~~L~ 1114 (1138)
.|+.+.
T Consensus 323 al~~~~ 328 (1249)
T 3sfz_A 323 VVSLIG 328 (1249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455443
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.65 E-value=0.0069 Score=69.30 Aligned_cols=75 Identities=28% Similarity=0.343 Sum_probs=49.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc----ccc------------chHHHHHHHHHHHhccC
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 995 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~----~iG------------~~E~~I~~lF~~A~k~~ 995 (1138)
+..-++|+|+||+|||+||..+|..+ +.+++.++...-... ..| ..+.....+-..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 33568999999999999999998765 678888887432110 001 11222222222334567
Q ss_pred CeEEEEcCCccccc
Q 001150 996 PSVIFVDEVDSMLG 1009 (1138)
Q Consensus 996 PsIIfIDEID~L~~ 1009 (1138)
+.+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999998863
No 226
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.61 E-value=0.018 Score=69.69 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=52.6
Q ss_pred CeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC--CCcHHHHhcCCceEEecCCCH
Q 001150 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVNLPDA 1073 (1138)
Q Consensus 996 PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~--~Ld~aLlrRFd~~I~v~lPd~ 1073 (1138)
+-+|+|||+..|+.... ......+..+...-+ ...|-+|.+|.+|. .|+..++.-|...|.+...+.
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~GR------a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQKAR------AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHHHCT------TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHHh------hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCH
Confidence 46899999998863211 122233333333221 24688888898887 899999999999999999998
Q ss_pred HHHHHHHH
Q 001150 1074 PNRAKILQ 1081 (1138)
Q Consensus 1074 eeR~eIL~ 1081 (1138)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877773
No 227
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.58 E-value=0.015 Score=65.37 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=63.9
Q ss_pred HHHHHHHHhhcc-cCCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCch
Q 001150 643 INTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1138)
Q Consensus 643 i~~L~ev~~~~~-~~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~ 721 (1138)
++.|.+.+.... ..+.-|++|||+|.+ +.+..+.|...|+.-+.++++|..++.++.
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l---~~~a~naLLk~lEep~~~~~~Il~t~~~~~------------------- 150 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALL---TDAAANALLKTLEEPPAETWFFLATREPER------------------- 150 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGB---CHHHHHHHHHHHTSCCTTEEEEEEESCGGG-------------------
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhc---CHHHHHHHHHHhcCCCCCeEEEEEeCChHh-------------------
Confidence 556666554322 245789999999985 245667788888888888888888876531
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 722 ~~l~d~a~~~~f~r~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
+.+.|..|. +.+.+..|+.++..++++.+.
T Consensus 151 ------------------------l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 151 ------------------------LLATLRSRC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHC
T ss_pred ------------------------CcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc
Confidence 456677788 789999999999888887543
No 228
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.55 E-value=0.0093 Score=63.94 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=44.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc-------cccccccch-----HHHHHHHHHHHhc----cCCe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAPS 997 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se-------L~s~~iG~~-----E~~I~~lF~~A~k----~~Ps 997 (1138)
.-+|++||+|+|||+++..++..+ +..++.+.... +.+. .|-. -.....++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 457889999999999998888777 55666553221 1111 1110 0112345555554 3588
Q ss_pred EEEEcCCccc
Q 001150 998 VIFVDEVDSM 1007 (1138)
Q Consensus 998 IIfIDEID~L 1007 (1138)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999865
No 229
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.53 E-value=0.0061 Score=71.63 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el 960 (1138)
.+||.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999887
No 230
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.50 E-value=0.0041 Score=84.37 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccccc----cc--------chHHHHHHHHHHHhc----
Q 001150 933 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 993 (1138)
Q Consensus 933 ~rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~~----iG--------~~E~~I~~lF~~A~k---- 993 (1138)
..|..-++|+|+||+|||+||..+|..+ +.+++.++..+....+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 3455679999999999999999999887 5678888886643332 22 122235555555544
Q ss_pred cCCeEEEEcCCccccc
Q 001150 994 IAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 994 ~~PsIIfIDEID~L~~ 1009 (1138)
..|++||||.|..+..
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6899999999999874
No 231
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.48 E-value=0.0077 Score=68.26 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=49.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEEecccccc--------cccc----------------chH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFG----------------EGE 981 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---------g~~fi~Id~seL~s--------~~iG----------------~~E 981 (1138)
+..-++|+||||+|||+||..+|... +..+++++....+. ...| ..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 33458999999999999999999873 45677777654210 0000 011
Q ss_pred ---HHHHHHHHHHhc--cCCeEEEEcCCccccc
Q 001150 982 ---KYVKAVFSLASK--IAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 982 ---~~I~~lF~~A~k--~~PsIIfIDEID~L~~ 1009 (1138)
..+..+...++. ..+.+|+||.+..++.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 112233444555 6789999999998873
No 232
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.48 E-value=0.0044 Score=69.54 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=50.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEEecccccc--------cccc----------------chH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFG----------------EGE 981 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---------g~~fi~Id~seL~s--------~~iG----------------~~E 981 (1138)
+..-++|+||||+|||+||..+|... +..++.++...-+. ...| ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 33568999999999999999999875 45677777654210 0001 011
Q ss_pred ---HHHHHHHHHHhc-cCCeEEEEcCCccccc
Q 001150 982 ---KYVKAVFSLASK-IAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 982 ---~~I~~lF~~A~k-~~PsIIfIDEID~L~~ 1009 (1138)
..+..+...++. ..+.+|+||.+..+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999998863
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.0017 Score=67.25 Aligned_cols=33 Identities=39% Similarity=0.533 Sum_probs=29.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
...|+|.|++|+|||+++++||..++++++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 357999999999999999999999999887654
No 234
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.42 E-value=0.0025 Score=71.01 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhHh---CCeEEEeecccc
Q 001150 430 TVNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSL 470 (1138)
Q Consensus 430 ~~~~~ILL~gp~g~E~yqe~LakALA~~~---~a~ll~~d~~~~ 470 (1138)
.....|||+||+| .++++||+|+++.. +.+++.++...+
T Consensus 23 ~~~~~vLi~Ge~G--tGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSG--TGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTT--SCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCC--chHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 3456899999999 99999999999975 567888877554
No 235
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.40 E-value=0.0085 Score=67.62 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=46.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCceEEEecccccc----ccccc--------hHHHHHHH-H---HH---Hhc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KWFGE--------GEKYVKAV-F---SL---ASK 993 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el-----g~~fi~Id~seL~s----~~iG~--------~E~~I~~l-F---~~---A~k 993 (1138)
.++|+||||+|||+|+-.++... +..++.++...-.. ..+|- .+....++ + +. ++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988776554 56788888654211 11110 01112222 2 22 355
Q ss_pred cCCeEEEEcCCcccccC
Q 001150 994 IAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 994 ~~PsIIfIDEID~L~~~ 1010 (1138)
..|.+|+||-|..|..+
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 68999999999999753
No 236
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.012 Score=62.04 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=26.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
+..-++|+||||+|||+|+..+|... +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 33468999999999999998887654 556666654
No 237
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.037 Score=61.78 Aligned_cols=76 Identities=9% Similarity=0.137 Sum_probs=56.3
Q ss_pred CCCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 001150 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1138)
Q Consensus 656 ~~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r 735 (1138)
.+|-||+|||++. +. .+..+.|...|+..+.++.+|-+++..+.
T Consensus 133 ~~~~vlilDE~~~-L~--~~~~~~L~~~le~~~~~~~~Il~t~~~~~--------------------------------- 176 (354)
T 1sxj_E 133 HRYKCVIINEANS-LT--KDAQAALRRTMEKYSKNIRLIMVCDSMSP--------------------------------- 176 (354)
T ss_dssp -CCEEEEEECTTS-SC--HHHHHHHHHHHHHSTTTEEEEEEESCSCS---------------------------------
T ss_pred CCCeEEEEeCccc-cC--HHHHHHHHHHHHhhcCCCEEEEEeCCHHH---------------------------------
Confidence 3678999999998 43 44556677778777666777777665542
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 001150 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1138)
Q Consensus 736 ~~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~~ 778 (1138)
+.+.|..|+ ..+.+..|+.++...+|+..+.+
T Consensus 177 ----------l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 177 ----------IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ----------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 345577788 89999999999999999876643
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0023 Score=63.59 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
-|+|.|++|+|||++++.|+..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998887654
No 239
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.32 E-value=0.0082 Score=63.36 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHH--HH--hCCceEEEe
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVA--TE--AGANFINIS 968 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA--~e--lg~~fi~Id 968 (1138)
+..-+.|.||+|+|||+|++.++ .. .+...+.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33568999999999999999998 33 244444444
No 240
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.20 E-value=0.0024 Score=64.51 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.|+||+|||++|++||..++++|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887653
No 241
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.20 E-value=0.0026 Score=64.63 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|+|.|+||+|||++|+.||..+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4999999999999999999999999887644
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.18 E-value=0.014 Score=63.04 Aligned_cols=37 Identities=32% Similarity=0.366 Sum_probs=32.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
+..++|.|+||+|||++|+.|+..++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3679999999999999999999999877777777655
No 243
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.17 E-value=0.003 Score=64.03 Aligned_cols=31 Identities=48% Similarity=0.861 Sum_probs=28.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|+|+|+||+|||+++++||..++++++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4699999999999999999999999887654
No 244
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.13 E-value=0.0027 Score=57.21 Aligned_cols=69 Identities=6% Similarity=0.155 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcc
Q 001150 764 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDA 843 (1138)
Q Consensus 764 d~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~ 843 (1138)
+.++|.+||+.++.+ .....+++....+-.+.||+|+||..+|.++.+. ++. ..
T Consensus 2 d~~~R~~Il~~~l~~----~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~---------------a~~-------~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSK----MNLSEEVDLEDYVARPDKISGADINSICQESGML---------------AVR-------EN 55 (83)
T ss_dssp CHHHHHHHHHHHHTT----SCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHG---------------GGT-------SC
T ss_pred CHHHHHHHHHHHhCC----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHH---------------HHH-------hc
Confidence 578999999998865 3344567777778889999999999999876542 222 12
Q ss_pred cccccchhhhhhHhH
Q 001150 844 RLVLSCESIQYGIGI 858 (1138)
Q Consensus 844 kl~l~~edl~~al~~ 858 (1138)
...|+.++|..++..
T Consensus 56 ~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 56 RYIVLAKDFEKAYKT 70 (83)
T ss_dssp CSSBCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHH
Confidence 356888888876653
No 245
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.13 E-value=0.0031 Score=63.09 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
..|+|.|++|+|||++++.||..+|++++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46999999999999999999999999887643
No 246
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.12 E-value=0.05 Score=65.08 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=49.7
Q ss_pred eEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCC--CCcHHHHhcCCceEEecCCCHH
Q 001150 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVNLPDAP 1074 (1138)
Q Consensus 997 sIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~--~Ld~aLlrRFd~~I~v~lPd~e 1074 (1138)
-+|+|||+..++.. .......++..+...-+ ...+-+|.+|.++. .++..++..|..+|.|...+..
T Consensus 299 ivlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 299 IVVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 367 (512)
T ss_dssp EEEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHH
T ss_pred EEEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHH
Confidence 38999999877521 11122233333322221 13567777888775 6889999999999999999988
Q ss_pred HHHHHHHH
Q 001150 1075 NRAKILQV 1082 (1138)
Q Consensus 1075 eR~eIL~~ 1082 (1138)
+...|+..
T Consensus 368 dsr~ilg~ 375 (512)
T 2ius_A 368 DSRTILDQ 375 (512)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 88877753
No 247
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.10 E-value=0.0033 Score=63.89 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=27.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.-|+|.|+||+|||++++.|+..++++++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 5689999999999999999999999887664
No 248
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.06 E-value=0.021 Score=59.37 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el 960 (1138)
.+.|.||+|+|||+|++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 249
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.03 E-value=0.048 Score=65.45 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHH----HhCCce---EEEecccc-----
Q 001150 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAGANF---INISMSSI----- 972 (1138)
Q Consensus 905 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~----elg~~f---i~Id~seL----- 972 (1138)
|.+..++.|.+.+... . ....+.|.|+|+.|+|||+||+++++ .....| +.++.+..
T Consensus 132 GR~~~~~~l~~~L~~~---------~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM---------C--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCHHHHHHHHHHHHHH---------T--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CchHHHHHHHHHHhcc---------c--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 8888888888877421 0 11235688999999999999999997 232222 23333221
Q ss_pred -------cccccc--------c----hHHHHHHHHHHHhcc-CCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhc
Q 001150 973 -------TSKWFG--------E----GEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1032 (1138)
Q Consensus 973 -------~s~~iG--------~----~E~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ld 1032 (1138)
...... . ....+...+...-.. +..+|+||+++.. .. + .+.
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------~~---~--~~~---- 261 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------ET---I--RWA---- 261 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------HH---H--HHH----
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------hh---h--ccc----
Confidence 000000 0 011122223333233 3799999999743 11 1 111
Q ss_pred CCCccCCCCEEEEEecCCCCCCcHHHHhcCCceEEecCCCHHHHHHHHHHHHhhCCCCCc--ccHHHHHHHcCCCcHHHH
Q 001150 1033 GLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD--VDFDAIANMTDGYSGSDL 1110 (1138)
Q Consensus 1033 gl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd~~I~v~lPd~eeR~eIL~~ll~k~~l~~d--vdl~~LA~~teGySgaDL 1110 (1138)
.. ....||.||........ .......+.+...+.++-.++|...........+ .....|++.+.|.. -.|
T Consensus 262 ~~-----~gs~ilvTTR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP-LAl 333 (549)
T 2a5y_B 262 QE-----LRLRCLVTTRDVEISNA--ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP-ATL 333 (549)
T ss_dssp HH-----TTCEEEEEESBGGGGGG--CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH-HHH
T ss_pred cc-----CCCEEEEEcCCHHHHHH--cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh-HHH
Confidence 10 23456677765332110 0011245788888999988888876422211011 12456677777643 344
Q ss_pred HHH
Q 001150 1111 KNL 1113 (1138)
Q Consensus 1111 ~~L 1113 (1138)
+.+
T Consensus 334 ~~~ 336 (549)
T 2a5y_B 334 MMF 336 (549)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.01 E-value=0.011 Score=61.66 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el 960 (1138)
+..-+.|.||+|+|||+|++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33568999999999999999999854
No 251
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.99 E-value=0.012 Score=68.22 Aligned_cols=76 Identities=24% Similarity=0.269 Sum_probs=47.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEEecccccc--------ccccc----------------h-
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFGE----------------G- 980 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---------g~~fi~Id~seL~s--------~~iG~----------------~- 980 (1138)
+..-++|+||||+|||+|+..+|... +...++++...... ..+|- .
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 33568999999999999999887543 23467777644210 00110 0
Q ss_pred --HHHHHHHHHHHhccCCeEEEEcCCcccccC
Q 001150 981 --EKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1138)
Q Consensus 981 --E~~I~~lF~~A~k~~PsIIfIDEID~L~~~ 1010 (1138)
...+..+...+....|.+|+||++-.++..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 112233334445568999999999988743
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.99 E-value=0.0036 Score=64.12 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=27.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e-lg~~fi~Id 968 (1138)
..|+|+|++|+|||++++.||.. +|++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 46999999999999999999999 687776543
No 253
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.99 E-value=0.0034 Score=62.01 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=26.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
-|+|.||||+|||++|+.| ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887764
No 254
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.004 Score=65.35 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
+..|+|.|+||+|||++|+.||..++++++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35799999999999999999999999876654
No 255
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.98 E-value=0.0043 Score=67.28 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=29.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
-++|.||+|+|||+||++||..++.+++..|.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999988877653
No 256
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.97 E-value=0.003 Score=57.92 Aligned_cols=70 Identities=7% Similarity=0.031 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccccchhhHHHHHHHHHhhhhhcCCCCCCcc
Q 001150 764 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDA 843 (1138)
Q Consensus 764 d~E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ls~~~ie~iV~~A~~~~l~~~~~~~~~~ 843 (1138)
+.++|.+||+.++.+ .....+++....+-.|.||+|+||..+|.++.+.+.. + .
T Consensus 2 d~~~R~~Il~~~~~~----~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r-----------~-----------~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS----MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR-----------A-----------R 55 (88)
T ss_dssp CSSHHHHHHHHHHTT----SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHH-----------H-----------S
T ss_pred CHHHHHHHHHHHHCC----CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-----------h-----------c
Confidence 567899999999865 4455677888888899999999999999986552211 1 1
Q ss_pred cccccchhhhhhHhHH
Q 001150 844 RLVLSCESIQYGIGIF 859 (1138)
Q Consensus 844 kl~l~~edl~~al~~l 859 (1138)
...|+.++|..++..+
T Consensus 56 ~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKV 71 (88)
T ss_dssp CSSBCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 2357888888777633
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.97 E-value=0.0046 Score=63.85 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=27.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|+|.|+||+|||++|+.|+..++++++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4689999999999999999999999887654
No 258
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.019 Score=69.88 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=24.4
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1138)
..|||.|||| .++++||||||+.++..
T Consensus 328 ~~vLL~GppG--tGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPG--TAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSC--CTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCc--hHHHHHHHHHHHhCCCc
Confidence 3799999999 99999999999988655
No 259
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.96 E-value=0.0037 Score=62.45 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.|++|+|||++|+.||..++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999887653
No 260
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.96 E-value=0.058 Score=60.38 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc-------cc-------------ccchHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW-------------FGEGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s-------~~-------------iG~~E~~I~~lF~~A 991 (1138)
++.-++|.||+|+|||+++..||..+ +..+..+++..+.. .| .+.+...+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 34668999999999999999999876 55555555432110 00 011222223344555
Q ss_pred hccCCeEEEEcCCcc
Q 001150 992 SKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~ 1006 (1138)
....+.+|+||+.-.
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 566789999998863
No 261
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.93 E-value=0.0042 Score=62.88 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.-|+|.|+||+|||++|+.|+..++++++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4689999999999999999999999876543
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.91 E-value=0.042 Score=64.58 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=51.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc--------------------ccccchHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------------KWFGEGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s--------------------~~iG~~E~~I~~lF~~A 991 (1138)
++.-|+|.|++|+|||+++..||..+ |..+.-+++..+.. .....+...+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999877 66776666543211 01112334456677777
Q ss_pred hccCCeEEEEcCCccc
Q 001150 992 SKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L 1007 (1138)
....+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999988644
No 263
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.90 E-value=0.0043 Score=63.15 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.-|+|.|+||+|||++|+.||..++++++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 46999999999999999999999998766543
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.88 E-value=0.012 Score=67.24 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=45.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCceEEEec-cccc---------cccccchHHHHHHHHHHHhccCCeEEEEc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM-SSIT---------SKWFGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~-seL~---------s~~iG~~E~~I~~lF~~A~k~~PsIIfID 1002 (1138)
.-++|.||+|+|||++.++++..+ +..++.+.- .++. ....+.........+..|-...|.||++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 458999999999999999998876 344444322 1111 01111111234557777778899999999
Q ss_pred CCc
Q 001150 1003 EVD 1005 (1138)
Q Consensus 1003 EID 1005 (1138)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 994
No 265
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.88 E-value=0.056 Score=60.68 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.1
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEE
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLL 463 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll 463 (1138)
..++|+||+| .++++|+|+||+..++++.
T Consensus 52 ~~~ll~Gp~G--~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPG--LGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTT--SSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCEE
Confidence 5799999999 9999999999999987654
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.88 E-value=0.0055 Score=61.32 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..|.|.||+|+|||++++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 358999999999999999999999976554
No 267
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.86 E-value=0.014 Score=63.35 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH---hCCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e---lg~~fi~Id~seL 972 (1138)
.-|+|.|+||+|||++|+.|+.. .|++++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46899999999999999999998 6888886666544
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.80 E-value=0.064 Score=59.94 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
.+..-++|.|+||+|||+||..+|... +.+++.++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 343469999999999999999998765 456766664
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.80 E-value=0.012 Score=65.07 Aligned_cols=37 Identities=38% Similarity=0.502 Sum_probs=30.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
+.-|+|.||||+|||++|++|+..++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3568999999999999999999998656677776444
No 270
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.77 E-value=0.0053 Score=61.13 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|+|.|++|+|||++|+.|+..++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999998877543
No 271
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.033 Score=62.45 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=54.2
Q ss_pred CCeEEEEcchhhhhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 001150 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1138)
Q Consensus 657 ~p~ILfiddi~~~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~ 736 (1138)
++-|++|||+|.+- .+..+.|...|+..+..+.+|.++|..+.
T Consensus 110 ~~~viiiDe~~~l~---~~~~~~L~~~le~~~~~~~~il~~n~~~~---------------------------------- 152 (340)
T 1sxj_C 110 GFKLIILDEADAMT---NAAQNALRRVIERYTKNTRFCVLANYAHK---------------------------------- 152 (340)
T ss_dssp SCEEEEETTGGGSC---HHHHHHHHHHHHHTTTTEEEEEEESCGGG----------------------------------
T ss_pred CceEEEEeCCCCCC---HHHHHHHHHHHhcCCCCeEEEEEecCccc----------------------------------
Confidence 46799999999853 34556677788888888888888775431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 737 ~~~~~~~~~~d~~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
+.++|..|+ ..+.+..++.++..+++...+
T Consensus 153 ---------i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 153 ---------LTPALLSQC-TRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp ---------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHH
T ss_pred ---------cchhHHhhc-eeEeccCCCHHHHHHHHHHHH
Confidence 356677788 588898888888777776544
No 272
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.73 E-value=0.007 Score=62.52 Aligned_cols=31 Identities=32% Similarity=0.586 Sum_probs=27.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.-|+|.|++|+|||++|+.|+..+++.++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4699999999999999999999998776653
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.023 Score=64.70 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---------CCceEEEeccc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 971 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---------g~~fi~Id~se 971 (1138)
+..-+.|+||+|+|||+|++.++... +..+++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33568999999999999999999887 24557777643
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.71 E-value=0.0054 Score=63.95 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.||||+|||++|+.||..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998877665
No 275
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.70 E-value=0.0057 Score=63.67 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=26.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.||||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999999877654
No 276
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.70 E-value=0.07 Score=60.50 Aligned_cols=94 Identities=7% Similarity=0.199 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcchhhhhcC---CcchhhHHHHHHhcCC-----CcEEEEeecccCCCccccCCCCCcc
Q 001150 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKEKSHPGGLL 713 (1138)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~ILfiddi~~~l~~---~~~~~~~lk~~L~~l~-----g~VvvIGstt~~d~~d~k~~~~~~~ 713 (1138)
+++.|.+.+.. ...|+||+|||+|.+... ..+....+...+..++ .+|.||++++..+.
T Consensus 125 ~~~~l~~~l~~--~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~----------- 191 (412)
T 1w5s_A 125 ILKALVDNLYV--ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRA----------- 191 (412)
T ss_dssp HHHHHHHHHHH--HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHH-----------
T ss_pred HHHHHHHHHHh--cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccH-----------
Confidence 45666666653 357999999999987653 3455444444555444 68889988765431
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchHHH---HHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 001150 714 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKAT---KLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1138)
Q Consensus 714 l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d---~~l~rRF~~~I~I~lPd~E~rl~ILk~~L~ 777 (1138)
. . .++ ..+.++|...+.+++++.++..++++..+.
T Consensus 192 -----------~--------~----------~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 192 -----------L--------S----------YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp -----------H--------H----------HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred -----------H--------H----------HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 0 0 133 556666766688888899988888876553
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.69 E-value=0.0069 Score=61.33 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=26.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|+|.|+||+|||++++.||..++++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4589999999999999999999998766543
No 278
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.64 E-value=0.0059 Score=62.33 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.-|+|.|+||+|||++|+.||..++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999766544
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.63 E-value=0.0048 Score=62.38 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-|+|.|+||+|||++++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999886
No 280
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.63 E-value=0.015 Score=64.90 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=48.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---------------C----CceEEEeccccc-cc-------ccc---------
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK-------WFG--------- 978 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---------------g----~~fi~Id~seL~-s~-------~iG--------- 978 (1138)
+..-++|+||||+|||+||..+|... | ..+++++...-+ .. ..|
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 33558999999999999999999763 2 467777765421 00 000
Q ss_pred -------chHH---HHHHHHHHHhc-cCCeEEEEcCCccccc
Q 001150 979 -------EGEK---YVKAVFSLASK-IAPSVIFVDEVDSMLG 1009 (1138)
Q Consensus 979 -------~~E~---~I~~lF~~A~k-~~PsIIfIDEID~L~~ 1009 (1138)
..+. .+..+...++. ..+.+|+||.+..+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 0111 22334444555 5789999999998863
No 281
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.62 E-value=0.0076 Score=73.13 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=55.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc----ccccccchHHHHHHHHHHH---------hccCCeEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSKWFGEGEKYVKAVFSLA---------SKIAPSVIF 1000 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL----~s~~iG~~E~~I~~lF~~A---------~k~~PsIIf 1000 (1138)
..++|.|+||||||+++.+++..+ +..++.+..+.- +....+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998766 666655432211 1111111112233332111 112457999
Q ss_pred EcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCC
Q 001150 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1138)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p 1051 (1138)
|||+..+- ...+..|+..+. ...++++++-.+..
T Consensus 285 IDEasml~------------~~~~~~Ll~~~~-----~~~~lilvGD~~QL 318 (574)
T 3e1s_A 285 VDEVSMMG------------DALMLSLLAAVP-----PGARVLLVGDTDQL 318 (574)
T ss_dssp ECCGGGCC------------HHHHHHHHTTSC-----TTCEEEEEECTTSC
T ss_pred EcCccCCC------------HHHHHHHHHhCc-----CCCEEEEEeccccc
Confidence 99998661 223344443332 24678888877653
No 282
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.58 E-value=0.036 Score=60.39 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
.-++|+||+|+|||+|+..+|..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998654
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.58 E-value=0.0073 Score=64.92 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
++..|+|.||||+|||++|+.|+..++++++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 346799999999999999999999998776654
No 284
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.58 E-value=0.0064 Score=61.45 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.-|+|.|+||+|||++|+.|+..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999999776654
No 285
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.58 E-value=0.0073 Score=64.13 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999877654
No 286
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.57 E-value=0.0059 Score=64.45 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=27.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5699999999999999999999999877654
No 287
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.57 E-value=0.0057 Score=64.26 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=27.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877664
No 288
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.56 E-value=0.0075 Score=62.15 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=27.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.-|+|.|++|+|||++++.|++.++++++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46899999999999999999999988666543
No 289
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.56 E-value=0.0061 Score=61.47 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi 965 (1138)
.-|+|.|+||+|||++|+.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999887
No 290
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.53 E-value=0.054 Score=63.59 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=28.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~ 969 (1138)
.+..-++|.|+||+|||+|+..+|..+ |.+++.++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 344568999999999999999998765 557777664
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.50 E-value=0.0097 Score=59.81 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=26.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..++|.|++|+|||++++.|+..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 468999999999999999999998865554
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.49 E-value=0.0066 Score=60.76 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=23.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHH-HhCCceE
Q 001150 937 KGILLFGPPGTGKTMLAKAVAT-EAGANFI 965 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~-elg~~fi 965 (1138)
.-|+|.|+||+|||++|+.|+. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 3589999999999999999999 4554443
No 293
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.49 E-value=0.0069 Score=61.59 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=30.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
.-++|.||+|+|||++++.|+...+...+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 568999999999999999999988777777776543
No 294
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.41 E-value=0.055 Score=56.80 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=27.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~ 969 (1138)
.+..-++|+|+||+|||++|..+|... +.+++.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 343568999999999999998876542 667766654
No 295
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.37 E-value=0.07 Score=62.41 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~ 969 (1138)
.+..-++|.|+||+|||+||..+|... +.+++.++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344568999999999999999988764 567777765
No 296
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.35 E-value=0.055 Score=59.31 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=25.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g~~fi~Id 968 (1138)
.-++|.||||+|||+|++.+|..+ |.+++.++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999998776 44565554
No 297
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.32 E-value=0.014 Score=59.16 Aligned_cols=31 Identities=29% Similarity=0.158 Sum_probs=28.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g~~fi~Id 968 (1138)
-|.|.|++|+|||++++.|+..+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999998 89888765
No 298
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.28 E-value=0.1 Score=54.94 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=70.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc---------cccccc-----------cc-c-----hHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS---------SITSKW-----------FG-E-----GEKYVKAV 987 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s---------eL~s~~-----------iG-~-----~E~~I~~l 987 (1138)
..|++|+++|.|||++|-++|..+ |..+..+..- .++..+ .- . .+......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998776 7776666221 122222 00 0 12334455
Q ss_pred HHHHhc----cCCeEEEEcCCcccccCCCCcchHHHHHHHHHHHHHHhcCCCccCCCCEEEEEecCCCCCCcHHHHhcCC
Q 001150 988 FSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP 1063 (1138)
Q Consensus 988 F~~A~k----~~PsIIfIDEID~L~~~r~~~~~~~al~~il~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~Ld~aLlrRFd 1063 (1138)
+..+++ ..+.+|+|||+-..+....-+ ..+++..+..- ....-||.|+|.+ +++++..-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~R----p~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNAR----PGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHTS----CTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHhC----cCCCEEEEECCCC---cHHHHHhCc
Confidence 555544 357899999996543222111 11233333332 3567788899874 577887777
Q ss_pred ceEEec
Q 001150 1064 RRLMVN 1069 (1138)
Q Consensus 1064 ~~I~v~ 1069 (1138)
.+-++.
T Consensus 173 ~VTem~ 178 (196)
T 1g5t_A 173 TVSELR 178 (196)
T ss_dssp EEEECC
T ss_pred ceeeec
Confidence 666653
No 299
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.28 E-value=0.12 Score=60.75 Aligned_cols=73 Identities=21% Similarity=0.121 Sum_probs=48.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc----------cccc----------cchHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------SKWF----------GEGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~----------s~~i----------G~~E~~I~~lF~~A 991 (1138)
++.-++|.||+|+|||+++..||..+ |..+..+++..+. .... ..+.......+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34678999999999999999999777 6666666543210 0000 11222334556666
Q ss_pred hccCCeEEEEcCCccc
Q 001150 992 SKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L 1007 (1138)
....+.+|+||...++
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6667899999988654
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.27 E-value=0.028 Score=63.48 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
..|+|.||+|+|||+||+.||..++..++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 3689999999999999999999999888888653
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.26 E-value=0.028 Score=61.39 Aligned_cols=71 Identities=27% Similarity=0.362 Sum_probs=43.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CceEEEecc-ccc---------cccccchHHHHHHHHHHHhccCCeEEE
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVIF 1000 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg----~~fi~Id~s-eL~---------s~~iG~~E~~I~~lF~~A~k~~PsIIf 1000 (1138)
+..-++|.||+|+|||+++++++..+. ..++...-+ ++. ...+|.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 334689999999999999999998762 223222110 010 001111112335555666666899999
Q ss_pred EcCCc
Q 001150 1001 VDEVD 1005 (1138)
Q Consensus 1001 IDEID 1005 (1138)
+||+-
T Consensus 104 lDEp~ 108 (261)
T 2eyu_A 104 VGEMR 108 (261)
T ss_dssp ESCCC
T ss_pred eCCCC
Confidence 99984
No 302
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.25 E-value=0.012 Score=62.12 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=25.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
.|+|.||||+||++.|+.||+.+|++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999876544
No 303
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.25 E-value=0.013 Score=62.50 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
+-|+|.||||+||++.|+.||..++++.+ +..++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdl 63 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDL 63 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHH
Confidence 56889999999999999999999987654 44444
No 304
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.22 E-value=0.0093 Score=62.32 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877665
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.19 E-value=0.011 Score=59.60 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CceEEEeccc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 971 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg---~~fi~Id~se 971 (1138)
-|+|.|+||+|||++|+.|+..++ .++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 589999999999999999999885 4455555433
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.18 E-value=0.015 Score=60.11 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=25.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCceE
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg~~fi 965 (1138)
..-+.|.||+|+|||++++.|+..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 356899999999999999999999976544
No 307
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.18 E-value=0.011 Score=62.06 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..|+|.|+||+|||++++.||..++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 469999999999999999999999976554
No 308
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.18 E-value=0.019 Score=58.12 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=30.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
.-|.|.|++|+|||++++.|+..+ |++++.++...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 468899999999999999999998 99999887543
No 309
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.12 E-value=0.039 Score=59.01 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
.+||+||+|+|||.+|.+++..++..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999887777666543
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.02 E-value=0.015 Score=59.41 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
.|.|.|++|+|||++++.||+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987654
No 311
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.96 E-value=0.11 Score=57.77 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEecc
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 970 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~s 970 (1138)
++..++|.||+|+|||+++..||..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34678999999999999999998765 5566666553
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.92 E-value=0.033 Score=63.97 Aligned_cols=71 Identities=27% Similarity=0.365 Sum_probs=44.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CceEEEecc-cc--------cc-ccccchHHHHHHHHHHHhccCCeEEE
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SI--------TS-KWFGEGEKYVKAVFSLASKIAPSVIF 1000 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg----~~fi~Id~s-eL--------~s-~~iG~~E~~I~~lF~~A~k~~PsIIf 1000 (1138)
+...++|.||+|+|||+++++++..+. ..++.+..+ ++ +. ..+|.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 335689999999999999999998762 344333321 11 00 00111112234556666667899999
Q ss_pred EcCCc
Q 001150 1001 VDEVD 1005 (1138)
Q Consensus 1001 IDEID 1005 (1138)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99994
No 313
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.90 E-value=0.017 Score=61.00 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766544
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.87 E-value=0.018 Score=60.19 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..|.|.||+|+|||++++.|+..++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 368999999999999999999999977654
No 315
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.86 E-value=0.022 Score=57.96 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=26.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
|.|.|++|+|||++++.|+..+ |++++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999999 998886543
No 316
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.79 E-value=0.023 Score=58.74 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=28.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL 972 (1138)
.-+.|.||+|+|||+++++||..+ |...+.++...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 568899999999999999999998 555456665443
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.75 E-value=0.013 Score=60.25 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|.|.|++|+|||++++.||. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887766544
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.74 E-value=0.11 Score=60.52 Aligned_cols=94 Identities=19% Similarity=0.322 Sum_probs=54.2
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CceEEEecc-cc
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 972 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~s-eL 972 (1138)
..++++++-.......|..++. .+..-++|.||+|+|||++.++++..+. ..++.+.-+ ++
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~---------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~ 207 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK---------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF 207 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT---------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS
T ss_pred CCCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchh
Confidence 3456666655555555555421 2224589999999999999999999883 334443321 11
Q ss_pred cc-----ccccch-HHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 973 TS-----KWFGEG-EKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 973 ~s-----~~iG~~-E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
.- ..+... ..........+-+..|.+|++.||.
T Consensus 208 ~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 208 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred ccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 00 001111 1122344455556689999999863
No 319
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.71 E-value=0.02 Score=58.58 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCceEEEec
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-GANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-g~~fi~Id~ 969 (1138)
.-|.|.|++|+|||++++.|+..+ |++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 468999999999999999999998 688777653
No 320
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.67 E-value=0.11 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.2
Q ss_pred ceEEEECCCCCCHHHHHH-HHHHH
Q 001150 937 KGILLFGPPGTGKTMLAK-AVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LAr-ALA~e 959 (1138)
+.+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 469999999999998633 33443
No 321
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.66 E-value=0.016 Score=66.34 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..++|.|++|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999988854
No 322
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.65 E-value=0.022 Score=58.43 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|.|.|++|+|||++++.||..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998877644
No 323
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.57 E-value=0.089 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999887777653
No 324
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.51 E-value=0.19 Score=58.99 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=29.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
.+..-++|.|+||+|||++|..+|... |.+++.+++
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 444569999999999999999998766 667777765
No 325
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.48 E-value=0.13 Score=61.00 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~ 969 (1138)
+..-++|.|+||+|||+||..+|... |.+++.++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 33568999999999999999998776 456777665
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.45 E-value=0.066 Score=54.12 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.0
Q ss_pred ceEEEECCCCCCHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKA 955 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArA 955 (1138)
.-+.|.||+|+|||+|+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4588999999999999994
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.44 E-value=0.035 Score=56.39 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=29.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL 972 (1138)
..-|+|.|++|+|||++++.||..+ +.+++.++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3568999999999999999999987 555666664433
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.44 E-value=0.038 Score=56.69 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=26.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc--eEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGAN--FINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~--fi~I 967 (1138)
.-|+|.|+||+|||++|+.|+..++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 468999999999999999999998763 5443
No 329
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.43 E-value=0.02 Score=58.56 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=26.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..|.|.|++|+|||++++.||.. |++++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 56899999999999999999998 7766653
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.34 E-value=0.015 Score=59.96 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=24.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi 965 (1138)
.-|+|.|++|+|||++++.|+..++.+++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 56999999999999999999998855433
No 331
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.33 E-value=0.025 Score=67.60 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=24.6
Q ss_pred HHHHhhhCCCeEEEeCCCH-HHHHHHHHHhh
Q 001150 747 TKLLTKLFPNKVTIHMPQD-EALLASWKHQL 776 (1138)
Q Consensus 747 d~~l~rRF~~~I~I~lPd~-E~rl~ILk~~L 776 (1138)
.+++..||..++.|+.|++ +++..|++...
T Consensus 166 ~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 166 LEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp THHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 4678888988999999987 77888988654
No 332
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.29 E-value=0.41 Score=61.76 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Q 001150 904 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 904 ~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~e 959 (1138)
+|.+...+.|.+.+... .+.+-+.|+|+.|+|||+||+++++.
T Consensus 131 VGRe~eLeeL~elL~~~-------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 67777788887776520 11246899999999999999999864
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.26 E-value=0.034 Score=59.40 Aligned_cols=30 Identities=27% Similarity=0.641 Sum_probs=26.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..+.|.||+|+|||++++.|+..+|...+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 579999999999999999999999876554
No 334
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.26 E-value=0.024 Score=59.11 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
-|.|+|++|+|||++++.++..+|++++..|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4789999999999999999999898776644
No 335
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.23 E-value=0.02 Score=64.98 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
.-|+|.||+|+|||+|+..||+.++..++..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4689999999999999999999999888887754
No 336
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=94.19 E-value=0.0042 Score=56.04 Aligned_cols=46 Identities=2% Similarity=-0.023 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhcCCcchhhHhhhcCCCCcccccchhccccc
Q 001150 766 EALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1138)
Q Consensus 766 E~rl~ILk~~L~~~~e~l~~~~Nv~~l~~vL~t~glsgaDL~~Lci~a~~ 815 (1138)
++|.+||+.++.+ +....+++....+-.+.||+|+||..+|.++.+
T Consensus 1 ~~R~~Il~~~l~~----~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~ 46 (82)
T 2dzn_B 1 MERRLIFGTIASK----MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 46 (82)
T ss_dssp -----------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC----CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4799999998865 334456677777778899999999999997654
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.19 E-value=0.026 Score=58.30 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
.|.|.|++|+|||++++.||. +|++++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 8877664
No 338
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.15 E-value=0.22 Score=51.73 Aligned_cols=60 Identities=20% Similarity=0.092 Sum_probs=34.7
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchh--hhhcCCCCCCCceEEEECCCCCCHHHH-HHHHHHH
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPE--LFCKGQLTKPCKGILLFGPPGTGKTML-AKAVATE 959 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e--~f~~~~~~rP~~gILL~GPPGTGKT~L-ArALA~e 959 (1138)
..+|+++.-.+.+.+.|.+.-...+...+ .+... . ..+.+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~-~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI--I-EGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHH--H-TTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHH--h-cCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 45788888778888877765321111111 11100 0 114699999999999986 3334443
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.14 E-value=0.044 Score=58.81 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=31.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCce--------EEEecccccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANF--------INISMSSITS 974 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~f--------i~Id~seL~s 974 (1138)
.-|.|.|++|+|||++|+.|+..+++++ +.+++.++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4689999999999999999999999873 3577766643
No 340
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.11 E-value=0.036 Score=59.75 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=26.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..+.|.||+|+|||++++.||..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999977654
No 341
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.08 E-value=0.019 Score=59.27 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-|+|.|++|+|||++++.|+..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999874
No 342
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.01 E-value=0.023 Score=63.92 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=31.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
.-++|.||+|+|||+||..||..++..++..|.-.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 458899999999999999999999988888776544
No 343
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.00 E-value=0.035 Score=60.33 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
..|.|.|++|+|||++++.||..++++|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999998877643
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.94 E-value=0.048 Score=61.55 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=45.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEEecccccc-----c---cccchHHHHHHHHHHHhccCCeEEEEcCCc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS-----K---WFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~seL~s-----~---~iG~~E~~I~~lF~~A~k~~PsIIfIDEID 1005 (1138)
..++|.||+|+|||+|+++|+..+. ...+.++...... . ++.......+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998873 3345554322110 1 110012234556666777889999999986
No 345
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.88 E-value=0.046 Score=58.99 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=26.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..|.|.||+|+|||++++.||..+|+.++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 468899999999999999999999987653
No 346
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.87 E-value=0.1 Score=63.59 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
+-+++.|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 369999999999999888776554
No 347
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.76 E-value=0.14 Score=52.27 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.1
Q ss_pred ceEEEECCCCCCHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAK 954 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LAr 954 (1138)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 479999999999997444
No 348
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.60 E-value=0.086 Score=58.85 Aligned_cols=124 Identities=9% Similarity=0.043 Sum_probs=79.9
Q ss_pred eeeccCCCCCCCC-----CCCCC---CCCcccccccccccccCCCchhhHHHHHHHHHHHHhhccc-CCCeEEEEcchhh
Q 001150 598 GVRFDKPIPDGVD-----LGGQC---EGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESR-SCPFILFMKDAEK 668 (1138)
Q Consensus 598 gV~Fd~~~~~~~~-----l~~~c---~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~-~~p~ILfiddi~~ 668 (1138)
.++|.+|+|+|++ ++..| ...+.-|..-.+. +.+..--.|+.+++.+....- .+.-|++|||+|.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~------~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE------GENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS------SSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC------cCCCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 5899999999998 54443 2222112111110 001112235666666543211 2346999999998
Q ss_pred hhcCCcchhhHHHHHHhcCCCcEEEEeecccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHH
Q 001150 669 SIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATK 748 (1138)
Q Consensus 669 ~l~~~~~~~~~lk~~L~~l~g~VvvIGstt~~d~~d~k~~~~~~~l~r~gr~~~~l~d~a~~~~f~r~~~~~~~~~~~d~ 748 (1138)
+ +.+..+.|...|+.-++++++|.+++.+.. +.+
T Consensus 94 l---t~~a~naLLk~LEep~~~t~fIl~t~~~~k-------------------------------------------l~~ 127 (305)
T 2gno_A 94 M---TQQAANAFLKALEEPPEYAVIVLNTRRWHY-------------------------------------------LLP 127 (305)
T ss_dssp B---CHHHHHHTHHHHHSCCTTEEEEEEESCGGG-------------------------------------------SCH
T ss_pred h---CHHHHHHHHHHHhCCCCCeEEEEEECChHh-------------------------------------------ChH
Confidence 5 345567788899988888888888875431 456
Q ss_pred HHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 001150 749 LLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1138)
Q Consensus 749 ~l~rRF~~~I~I~lPd~E~rl~ILk~~L 776 (1138)
+|..| .|.+..|++++..+.++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 77778 89999999998888887554
No 349
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.54 E-value=0.037 Score=57.74 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=25.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.-|.|.|++|+|||++++.|+. +|++++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 88766654
No 350
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.52 E-value=0.52 Score=56.14 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el 960 (1138)
..-++|.||+|+|||+|++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3568899999999999999999877
No 351
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.48 E-value=0.042 Score=57.15 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=27.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
..|.|.|++|+|||++++.|+..+|++++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 35899999999999999999999998776543
No 352
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.43 E-value=0.062 Score=57.00 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=27.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
..|.|.|++|+|||++++.||..+|++++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 468999999999999999999999987664
No 353
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.28 E-value=0.044 Score=62.31 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=27.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEec
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~ 969 (1138)
-|+|.||+|+|||+||..||..++..++..|.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 58899999999999999999999876666554
No 354
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.25 E-value=0.049 Score=56.44 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-++|.||+|+|||++++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4689999999999999999999884
No 355
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.23 E-value=0.035 Score=60.81 Aligned_cols=31 Identities=39% Similarity=0.503 Sum_probs=25.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-g~~fi~I 967 (1138)
.-|+|.|+||+|||++|+.|+..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 358999999999999999999974 6555543
No 356
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.21 E-value=0.65 Score=47.99 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
+.+++.+|+|+|||..+-..+...
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 469999999999998665554443
No 357
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.18 E-value=0.28 Score=51.43 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=31.3
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHH
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LA 953 (1138)
..+|+++.-.+.+.+.|.+.-...+...+...-.... ..+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHH
Confidence 3468888777777777765322111111100000000 1146999999999999853
No 358
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.16 E-value=0.18 Score=57.29 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
.|..-++|.|+||+|||+||..+|..+ +.++..+++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 343458999999999999999998775 677766664
No 359
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.13 E-value=0.068 Score=62.11 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
.-|+|+|+||+|||++|+.|+..+++.++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 568899999999999999999998765554
No 360
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.13 E-value=0.26 Score=51.38 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=29.5
Q ss_pred CCCccccc-ccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHH
Q 001150 895 DIGVTFDD-IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 895 ~~~vsfdD-I~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LA 953 (1138)
.+..+|.+ +.-...+.+.|.+.-.......+...-.... ..+.+++.+|+|+|||..+
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHH
Confidence 34456777 4445566666655422111111100000000 1146999999999999853
No 361
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.08 E-value=0.21 Score=55.09 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=33.6
Q ss_pred cccccccchHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~el 960 (1138)
.+|+++.-.+.+.+.|.+.-...+...+...-.........+++.+|+|+|||..+-..+...
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 456677666666666665432211111100000000111479999999999999766555443
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.06 E-value=0.049 Score=59.90 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=25.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
.-|.|.|++|+|||++|+.|+ .+|++++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 468999999999999999999 688776554
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.05 E-value=0.037 Score=57.25 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=25.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-g~~fi~I 967 (1138)
.-+.|.|++|+|||++++.|+..+ ++.++..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 458899999999999999999987 5554443
No 364
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.03 E-value=0.051 Score=61.18 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
-|+|.||+|+|||+||..||..++..++..|.-
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 578999999999999999999998777766643
No 365
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.94 E-value=0.078 Score=63.46 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=46.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEEeccc-ccc---cc--------ccchHHHHHHHHHHHhccCCeEEEEc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KW--------FGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~se-L~s---~~--------iG~~E~~I~~lF~~A~k~~PsIIfID 1002 (1138)
..++|.||+|+|||+++++++..+. ...+.+.... +.- .+ ++.....+..+...+-+..|.+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998873 3455554332 210 00 01111234555666677899999999
Q ss_pred CCc
Q 001150 1003 EVD 1005 (1138)
Q Consensus 1003 EID 1005 (1138)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 366
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.93 E-value=0.076 Score=55.27 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=29.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL 972 (1138)
.-|+|.|++|+|||++++.|+..+ |.+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 468899999999999999999876 466777775443
No 367
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.87 E-value=0.064 Score=56.11 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
-|.|.|++|+|||++++.||..+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
No 368
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.79 E-value=0.081 Score=54.26 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=50.9
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHH
Q 001150 375 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 454 (1138)
Q Consensus 375 ~~~~~~~~vv~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakAL 454 (1138)
.+..++..-++.+--..+|++|-+. +.+.+.++. .+.-.+.. +... ..++.|||+||+| .++++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~-~~~~~~~~-----~~~~--~~~~~~~l~G~~G--tGKT~la~~i 74 (202)
T 2w58_A 6 QESLIQSMFMPREILRASLSDVDLN-DDGRIKAIR-FAERFVAE-----YEPG--KKMKGLYLHGSFG--VGKTYLLAAI 74 (202)
T ss_dssp HHHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHH-HHHHHHHH-----CCSS--CCCCEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHH-HHHHHHHH-----hhhc--cCCCeEEEECCCC--CCHHHHHHHH
Confidence 3445566666666667899998654 223332322 22111111 1000 0136899999999 9999999999
Q ss_pred HhHh---CCeEEEeecc
Q 001150 455 AHYF---GAKLLIFDSH 468 (1138)
Q Consensus 455 A~~~---~a~ll~~d~~ 468 (1138)
|+++ +.+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 75 ANELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHTTTCCEEEEEHH
T ss_pred HHHHHHcCCeEEEEEhH
Confidence 9988 6677766653
No 369
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.74 E-value=0.071 Score=54.17 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=24.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEec
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~ 969 (1138)
-++|.||+|+|||++++.|+...+. .+.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcc
Confidence 4789999999999999999986643 234443
No 370
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.63 E-value=0.41 Score=49.83 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=41.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc--------ccccccccch-----HHHHHHHHHHHhccCCeEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVIF 1000 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s--------eL~s~~iG~~-----E~~I~~lF~~A~k~~PsIIf 1000 (1138)
.-.+++||.|+|||+.+-.+|+.+ +..++.+... .+.+. .|.. -.....++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 357899999999999888888776 6666555311 11111 1100 0011245554432 468999
Q ss_pred EcCCccc
Q 001150 1001 VDEVDSM 1007 (1138)
Q Consensus 1001 IDEID~L 1007 (1138)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999865
No 371
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.62 E-value=0.57 Score=49.46 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.0
Q ss_pred ceEEEECCCCCCHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVA 957 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA 957 (1138)
..+++.||+|+|||++...++
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998665554
No 372
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.49 E-value=0.26 Score=50.91 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=28.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
.-+.|.|++|+|||++++.|+..+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 468899999999999999999876 67776665443
No 373
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.48 E-value=0.073 Score=61.85 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEec
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~ 969 (1138)
.-|+|.||+|+|||+||..||..++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458899999999999999999999887776554
No 374
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.38 E-value=0.16 Score=60.82 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg---~~fi~Id~seL 972 (1138)
.-|+|+|.||+|||++|+.||..++ .....++..++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4589999999999999999999984 44445555443
No 375
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.37 E-value=1.2 Score=50.01 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEec
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~ 969 (1138)
++.-++|.|++|+|||+++..||..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44678999999999999999999876 566666554
No 376
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.34 E-value=0.26 Score=58.80 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=45.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccc-------------------cccc-cchHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------------------SKWF-GEGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~-------------------s~~i-G~~E~~I~~lF~~A 991 (1138)
++..|+|+|++|+|||+++..||..+ |..+..+++..+. .... ..+...+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999776 6666666652210 0000 11122223445555
Q ss_pred hccCCeEEEEcCCccc
Q 001150 992 SKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L 1007 (1138)
......++|||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 4456789999977644
No 377
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.28 E-value=0.3 Score=57.81 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 368999999999999999988765
No 378
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.26 E-value=0.28 Score=57.50 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCceEEEeccccccc----------------cc---c-chHHHHHHHHH
Q 001150 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------WF---G-EGEKYVKAVFS 989 (1138)
Q Consensus 934 rP~~gILL~GPPGTGKT~LArALA~el----g~~fi~Id~seL~s~----------------~i---G-~~E~~I~~lF~ 989 (1138)
.++..|+++|++|+|||+++..||..+ |..+.-+++...... +. + .+...+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345779999999999999999998776 677777776532110 00 0 11223355666
Q ss_pred HHhccCCeEEEEcCCcc
Q 001150 990 LASKIAPSVIFVDEVDS 1006 (1138)
Q Consensus 990 ~A~k~~PsIIfIDEID~ 1006 (1138)
.++.....+|+||=.-.
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 66655678999997543
No 379
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.24 E-value=0.073 Score=54.43 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
.-+.|.||+|+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999876
No 380
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.23 E-value=0.42 Score=53.12 Aligned_cols=72 Identities=21% Similarity=0.056 Sum_probs=46.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc-------------------ccc-cchHHHHHHHHHHHh
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------------------KWF-GEGEKYVKAVFSLAS 992 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s-------------------~~i-G~~E~~I~~lF~~A~ 992 (1138)
+.-+++.|++|+|||+++..+|..+ +..+..+++..... ... ..+...+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999999777 66666666542110 000 112223345666665
Q ss_pred ccCCeEEEEcCCccc
Q 001150 993 KIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 993 k~~PsIIfIDEID~L 1007 (1138)
.....+|+||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 556789999976543
No 381
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.21 E-value=0.089 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998763
No 382
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.09 E-value=0.078 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998874
No 383
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.05 E-value=0.55 Score=58.91 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..+++.||+|+|||+++..++...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999777775543
No 384
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.96 E-value=0.062 Score=56.84 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=28.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~Id~seL 972 (1138)
.+++|.||+|+|||+||.+++.... .++..|.-.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 6799999999999999999998876 6666554433
No 385
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.93 E-value=0.084 Score=54.52 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=23.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999999987
No 386
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.90 E-value=0.54 Score=57.55 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhcccCchhhhhcCCCCCCCceEEEECCCCCCHHHHHHHHH-HHh--CCceEEEe
Q 001150 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA-TEA--GANFINIS 968 (1138)
Q Consensus 905 Gle~vk~~L~e~V~~pl~~~e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA-~el--g~~fi~Id 968 (1138)
-.+.+++.+...+.. + .-.||+||||||||+++..+. ..+ +..+..+.
T Consensus 190 LN~~Q~~AV~~al~~--------------~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ--------------K--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp CCHHHHHHHHHHHHC--------------S--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHhcC--------------C--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 456666777665531 1 147999999999998544444 433 55544443
No 387
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.81 E-value=0.14 Score=59.90 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s 970 (1138)
+..|+|+|++|+|||+++..||..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3579999999999999999999877 5666666654
No 388
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.74 E-value=0.11 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999863
No 389
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.64 E-value=0.4 Score=53.14 Aligned_cols=73 Identities=23% Similarity=0.201 Sum_probs=46.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccccc----------------ccc---c-chHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWF---G-EGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s----------------~~i---G-~~E~~I~~lF~~A 991 (1138)
++..+.|.|++|+|||+++..+|..+ +..+..+++..... .+. + .+....+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568889999999999999999876 55665555421100 000 0 1112234556666
Q ss_pred hccCCeEEEEcCCccc
Q 001150 992 SKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L 1007 (1138)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567899999998543
No 390
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.55 E-value=0.099 Score=51.27 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=33.5
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhHh---CCeEEEeecccccC
Q 001150 430 TVNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSLLG 472 (1138)
Q Consensus 430 ~~~~~ILL~gp~g~E~yqe~LakALA~~~---~a~ll~~d~~~~~g 472 (1138)
....-|||+||+| .++++|||||+++. +.+++ ++...+..
T Consensus 22 ~~~~~vll~G~~G--tGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 22 ETDIAVWLYGAPG--TGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp TCCSCEEEESSTT--SSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCCEEEECCCC--CCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 3455799999999 99999999999987 78888 88866544
No 391
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.55 E-value=0.14 Score=53.33 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGA 962 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~ 962 (1138)
.|+|.||+|+|||+|+++|.....-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3899999999999999999988743
No 392
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.55 E-value=0.51 Score=49.85 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchhhhhc---CCCCCCCceEEEECCCCCCHHHHH
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK---GQLTKPCKGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~---~~~~rP~~gILL~GPPGTGKT~LA 953 (1138)
.+..+|.++.-...+.+.|.+.-. ..+..+.. .... ..+.+++.+|+|+|||..+
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNF---TEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTC---CSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHH
Confidence 345677777766777666655321 11111111 0000 1147999999999999853
No 393
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.54 E-value=0.37 Score=54.33 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el 960 (1138)
++.-+.|.||+|+|||++++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999877
No 394
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.50 E-value=0.16 Score=53.45 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.1
Q ss_pred ceEEEECCCCCCHH-HHHHHHHHHh--CCceEEEec
Q 001150 937 KGILLFGPPGTGKT-MLAKAVATEA--GANFINISM 969 (1138)
Q Consensus 937 ~gILL~GPPGTGKT-~LArALA~el--g~~fi~Id~ 969 (1138)
.=.+++||.|+||| .|.+++.+.. +..++.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34789999999999 6888887765 667777663
No 395
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.33 E-value=0.71 Score=49.32 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.2
Q ss_pred ceEEEECCCCCCHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAK 954 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LAr 954 (1138)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 479999999999998543
No 396
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.23 E-value=0.77 Score=53.66 Aligned_cols=73 Identities=22% Similarity=0.162 Sum_probs=45.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccccccc----------------ccc----chHHHHHHHHHHH
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFG----EGEKYVKAVFSLA 991 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL~s~----------------~iG----~~E~~I~~lF~~A 991 (1138)
++..++|.|++|+|||+++..||..+ +..+..+++...... +.. .+.......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 44678899999999999999999887 556666554321100 000 1122235566666
Q ss_pred hccCCeEEEEcCCccc
Q 001150 992 SKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 992 ~k~~PsIIfIDEID~L 1007 (1138)
+.....+|+||=.-.+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5456789999965433
No 397
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.09 E-value=0.12 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~elg 961 (1138)
..-+.|.||+|+|||+|++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35688999999999999999999884
No 398
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.93 E-value=0.13 Score=53.31 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
..+.|.||+|+|||+|++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999998763
No 399
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.88 E-value=0.58 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=20.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~e 959 (1138)
...|+|.|.+|+|||+|+.+|...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998754
No 400
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.86 E-value=0.16 Score=62.26 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEeccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~se 971 (1138)
.-|+|.|.+|+|||++|++|+..+ |.+++.++...
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 458999999999999999999999 99999987543
No 401
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.84 E-value=0.62 Score=55.58 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=46.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEecccc----ccc--ccc----------------------chHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK--WFG----------------------EGEKYVK 985 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id~seL----~s~--~iG----------------------~~E~~I~ 985 (1138)
.-++|.||+|+|||+|+++++... |..++.+...+- ... .+| ......+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ 361 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHH
Confidence 468999999999999999999765 445555543221 000 000 1223445
Q ss_pred HHHHHHhccCCeEEEEcCCccc
Q 001150 986 AVFSLASKIAPSVIFVDEVDSM 1007 (1138)
Q Consensus 986 ~lF~~A~k~~PsIIfIDEID~L 1007 (1138)
.++..+....|.+|+||-+..|
T Consensus 362 ~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 362 IIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHhhCCCEEEEcChHHH
Confidence 5666677788999999966555
No 402
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.83 E-value=0.21 Score=51.81 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCceEEEeccc
Q 001150 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~elg~~fi~Id~se 971 (1138)
+|++|++|+|||++|..+|.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 88888887654
No 403
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.81 E-value=0.17 Score=54.43 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~I 967 (1138)
..+-|.|+||+|||++|+.|+..++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3578999999999999999999999877654
No 404
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.73 E-value=0.59 Score=59.66 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
.-++|.||.|+|||++.+.++..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHH
Confidence 45899999999999999998743
No 405
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.71 E-value=1 Score=55.67 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=16.0
Q ss_pred ceEEEECCCCCCHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAK 954 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LAr 954 (1138)
..+|+.||+|+|||..+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 579999999999999763
No 406
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.58 E-value=1.1 Score=55.31 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=31.4
Q ss_pred cccccccchHHHHHHHHHHHhcccCch--hhhhcCCCCCCCceEEEECCCCCCHHHHHHHH
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV 956 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~--e~f~~~~~~rP~~gILL~GPPGTGKT~LArAL 956 (1138)
.+|++++-.+.+.+.+.+.-...+... +.+.. .... ...+|+.||+|+|||+.+...
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~-~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLE-GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTT-TCCEEEECCTTSCHHHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcC-CCcEEEEcCCCCcHHHHHHHH
Confidence 467777666666665554211111111 11111 0111 357999999999999977433
No 407
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.55 E-value=0.15 Score=54.42 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
.-|.|.|++|||||++|+.||..+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358899999999999999999999999865
No 408
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.53 E-value=0.15 Score=51.98 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg 961 (1138)
-+.|.||+|+|||+|++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998863
No 409
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.48 E-value=0.52 Score=48.86 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.1
Q ss_pred ceEEEECCCCCCHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAK 954 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LAr 954 (1138)
+.+++.+|+|+|||..+.
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998543
No 410
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.44 E-value=1.6 Score=42.09 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el 960 (1138)
.|+|.|++|+|||+|+.++....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 411
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.43 E-value=0.6 Score=54.08 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..++|+||+|+|||+|++.||+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 579999999999999999998865
No 412
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.37 E-value=1.7 Score=48.44 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=30.8
Q ss_pred cccccccchHHHHHHHHHHHhcccCch--hhhhcCCCCCCCceEEEECCCCCCHHHHHHHHHH
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~--e~f~~~~~~rP~~gILL~GPPGTGKT~LArALA~ 958 (1138)
.+|+++.-...+.+.|.+.-...+... +.+... .. ...+++.+|+|+|||..+-..+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~-~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--IL-GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHH--TT-TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hc-CCcEEEECCCCCcHHHHHHHHHH
Confidence 356666666666666665322111111 011000 01 14699999999999986544443
No 413
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.89 E-value=0.083 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg 961 (1138)
-|.|.|++|+|||++++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999984
No 414
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.86 E-value=0.88 Score=47.65 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=29.0
Q ss_pred cccccccchHHHHHHHHHHHhcccCchh--hhhcCCCCCCCceEEEECCCCCCHHHHH
Q 001150 898 VTFDDIGALENVKDTLKELVMLPLQRPE--LFCKGQLTKPCKGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 898 vsfdDI~Gle~vk~~L~e~V~~pl~~~e--~f~~~~~~rP~~gILL~GPPGTGKT~LA 953 (1138)
.+|+++.-...+.+.|.+.-...+...+ .+.. .. ..+.+++.+|+|+|||..+
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~-~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL--GR-CGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH--HH-TTCCEEEECCTTSSHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--Hh-CCCCEEEECCCCCcHHHHH
Confidence 4577776666666666553221111100 1100 00 1146999999999999853
No 415
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.82 E-value=1.2 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=24.3
Q ss_pred CceEEEECCCCCCHHHHHHHH--HHHh--CCceEEEec
Q 001150 936 CKGILLFGPPGTGKTMLAKAV--ATEA--GANFINISM 969 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArAL--A~el--g~~fi~Id~ 969 (1138)
...++|.||+|+|||+|++.+ +... +-.-+.++.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 356899999999999999994 4433 334455544
No 416
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.78 E-value=0.49 Score=53.92 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.9
Q ss_pred ceEEEECCCCCCHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAV 956 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArAL 956 (1138)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 46999999999999944433
No 417
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.76 E-value=0.34 Score=55.17 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=44.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEEecc-cccc----c---ccc-c-------hHHHHHHHHHHHhccCCeE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS----K---WFG-E-------GEKYVKAVFSLASKIAPSV 998 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~Id~s-eL~s----~---~iG-~-------~E~~I~~lF~~A~k~~PsI 998 (1138)
..++|.||+|+|||+|+++|+.... .-.+.++.. ++.. . ++- . ....++..+..+.+..|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998873 334444421 1100 0 111 0 1123456667777778999
Q ss_pred EEEcCCc
Q 001150 999 IFVDEVD 1005 (1138)
Q Consensus 999 IfIDEID 1005 (1138)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999985
No 418
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.72 E-value=0.96 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~e 959 (1138)
...|+|.|++|+|||+|+.++...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 419
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.69 E-value=0.67 Score=49.31 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Q 001150 939 ILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1138)
Q Consensus 939 ILL~GPPGTGKT~LArALA~el---g~~fi~Id 968 (1138)
.+++|+.|+|||+.+-.+|..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888877666 66666654
No 420
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.53 E-value=0.22 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998864
No 421
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.48 E-value=0.94 Score=57.94 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~ 958 (1138)
.-++|.||.|+|||++.+.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999853
No 422
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.42 E-value=0.33 Score=51.64 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=25.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CceEEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINI 967 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg--~~fi~I 967 (1138)
.-|.|.|++|+|||++++.|+..++ ..++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4588999999999999999999986 455543
No 423
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.39 E-value=0.14 Score=56.74 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=26.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CceEEEeccccc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT 973 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg---~~fi~Id~seL~ 973 (1138)
-|.|.||+|+|||++|+.|+..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 588999999999999999999875 556666666554
No 424
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.35 E-value=1.4 Score=50.36 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=34.2
Q ss_pred cCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe--EEEeecccccC
Q 001150 429 TTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK--LLIFDSHSLLG 472 (1138)
Q Consensus 429 ~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~--ll~~d~~~~~g 472 (1138)
......||+.|++| .++|++|+++.++.+-+ |+.+|...+..
T Consensus 149 a~~~~~vli~GesG--tGKe~lAr~ih~~s~r~~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 149 AKSKAPVLITGESG--TGKEIVARLIHRYSGRKGAFVDLNCASIPQ 192 (368)
T ss_dssp HTSCSCEEEECCTT--SSHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred hccchhheEEeCCC--chHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence 34455699999999 79999999999988755 89999876644
No 425
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.29 E-value=1.4 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..|+|.|++|+|||+|+.+|....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 579999999999999999998643
No 426
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.10 E-value=1.2 Score=43.52 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..|+|.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 427
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.05 E-value=1.4 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=18.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..+|+.+|+|+|||..+-..+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 469999999999998766555443
No 428
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.02 E-value=0.23 Score=53.02 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGAN 963 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~ 963 (1138)
.-+-|.||.|+|||+|++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 357899999999999999999988754
No 429
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.89 E-value=0.79 Score=51.87 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id 968 (1138)
..|.|.|+||+|||+|+.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 568999999999999999999876 55554444
No 430
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.85 E-value=0.045 Score=53.73 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 001150 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1138)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1138)
....|||+||+| .++++|||||+++.+ +++.+|.+
T Consensus 26 ~~~~vll~G~~G--tGKt~lA~~i~~~~~-~~~~~~~~ 60 (143)
T 3co5_A 26 RTSPVFLTGEAG--SPFETVARYFHKNGT-PWVSPARV 60 (143)
T ss_dssp CSSCEEEEEETT--CCHHHHHGGGCCTTS-CEECCSST
T ss_pred CCCcEEEECCCC--ccHHHHHHHHHHhCC-CeEEechh
Confidence 445799999999 999999999999988 77777653
No 431
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.76 E-value=0.26 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
.-+.|.||+|+|||+|++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999977
No 432
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.73 E-value=0.28 Score=50.90 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999874
No 433
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.59 E-value=1.1 Score=44.86 Aligned_cols=23 Identities=48% Similarity=0.619 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..|+|.|++|+|||+|..++...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 434
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.55 E-value=0.44 Score=48.79 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id 968 (1138)
.-+.|.|++|+|||+|+..|+..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999876 45554444
No 435
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=88.52 E-value=0.33 Score=62.43 Aligned_cols=64 Identities=25% Similarity=0.467 Sum_probs=52.2
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccc
Q 001150 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 621 (1138)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 621 (1138)
.+-.|.-||||.||..+. .-+.|.||.|+..--.+..--+-|.||.|--.|.||++.|++..|.
T Consensus 1062 ~~Q~F~LGDRVv~VqdsG-----------~VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrcs~~RG~ 1125 (1155)
T 3pie_A 1062 RSQRFHLGDRVMYIQDSG-----------KVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGL 1125 (1155)
T ss_pred cCCcccCCCeEEEecCCC-----------CCccccceEEEEEecCCCceEEEEEeccCccCCCcccccccccccc
Confidence 355589999999998443 2567999999987766655679999999999999999999987443
No 436
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.49 E-value=0.32 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
.-+.|.||.|+|||+|++.|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999999987
No 437
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.47 E-value=0.21 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-|.|.|++|+|||+||+.|+..++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5688999999999999999999885
No 438
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.39 E-value=0.48 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el 960 (1138)
++.-+.|.||.|+|||++++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33568899999999999999999887
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.25 E-value=0.29 Score=55.28 Aligned_cols=41 Identities=34% Similarity=0.472 Sum_probs=36.7
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCC
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 474 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~ 474 (1138)
.+.|+|+||+| .++.+||++||+.+++.++.+|+..+|-++
T Consensus 5 ~~~i~i~GptG--sGKTtla~~La~~l~~~iis~Ds~qvy~~~ 45 (323)
T 3crm_A 5 PPAIFLMGPTA--AGKTDLAMALADALPCELISVDSALIYRGM 45 (323)
T ss_dssp CEEEEEECCTT--SCHHHHHHHHHHHSCEEEEEECTTTTBTTC
T ss_pred CcEEEEECCCC--CCHHHHHHHHHHHcCCcEEeccchhhhcCC
Confidence 35799999999 999999999999999999999998877644
No 440
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=88.10 E-value=0.76 Score=55.25 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
.++|+++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 468999999999999887777664
No 441
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.95 E-value=0.37 Score=58.48 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=30.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CceEEEecccc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSSI 972 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg----~~fi~Id~seL 972 (1138)
.-|+|.|++|+|||++|++|+..++ .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 4689999999999999999999985 78888875443
No 442
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.81 E-value=0.41 Score=55.64 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEecc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id~s 970 (1138)
.+||++|+|+|||..+-+++..++..++.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999888888887777666544
No 443
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.74 E-value=0.27 Score=49.49 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=30.7
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
.+.|+|.||+| .++.+++|+||+.+|+.++-.|.
T Consensus 5 ~~~i~l~G~~G--sGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMG--AGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHhCCCEEEChH
Confidence 46899999999 99999999999999999886665
No 444
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.55 E-value=0.35 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4588999999999999999998864
No 445
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.40 E-value=0.81 Score=44.35 Aligned_cols=21 Identities=43% Similarity=0.801 Sum_probs=19.0
Q ss_pred ceEEEECCCCCCHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVA 957 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA 957 (1138)
-.|+|.|++|+|||+|+.++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 369999999999999999985
No 446
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.39 E-value=0.69 Score=50.00 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..|.|.|++|+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 447
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.35 E-value=0.69 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..++|.|++|+|||+|..+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 448
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=87.33 E-value=0.96 Score=50.89 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCCcccccccchHHHHHHHHHHHhcccCchh--hhhcCCCCCCCceEEEECCCCCCHHHHHH
Q 001150 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPE--LFCKGQLTKPCKGILLFGPPGTGKTMLAK 954 (1138)
Q Consensus 895 ~~~vsfdDI~Gle~vk~~L~e~V~~pl~~~e--~f~~~~~~rP~~gILL~GPPGTGKT~LAr 954 (1138)
....+|+++.-...+.+.|.+.-...+...+ .+... .. .+.+++.+|+|+|||..+-
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~--~~-~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPC--IK-GYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HT-TCCEEECCCSCSSSHHHHH
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHH--hC-CCCEEEECCCCCcccHHHH
Confidence 3345677777777777777653221111110 11000 01 1469999999999998643
No 449
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.24 E-value=0.37 Score=53.90 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCce
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAGANF 964 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg~~f 964 (1138)
+...+.|+||+|+|||+|++.|+..+...+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 335689999999999999999999884333
No 450
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.22 E-value=0.59 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~el 960 (1138)
++.-++|.||.|+|||++++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34568999999999999999999887
No 451
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.21 E-value=0.49 Score=49.94 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el---g~~fi~Id 968 (1138)
.-|.|.|++|+|||++++.|+..+ +++++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 347899999999999999999988 56665543
No 452
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=87.18 E-value=1.2 Score=46.94 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.7
Q ss_pred ceEEEECCCCCCHHHHH
Q 001150 937 KGILLFGPPGTGKTMLA 953 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LA 953 (1138)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999853
No 453
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.13 E-value=0.42 Score=49.53 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=24.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCceEE
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~~fi~ 966 (1138)
.++||.|++|+|||++|.++... |..++.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 68999999999999999999874 655544
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.03 E-value=0.17 Score=54.44 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCceE
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA-GANFI 965 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el-g~~fi 965 (1138)
+.-|.|.|++|+|||++++.|+..+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3568999999999999999999998 54443
No 455
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.02 E-value=0.64 Score=46.57 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el 960 (1138)
...|+|.|++|+|||+|+.++....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998653
No 456
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.96 E-value=3 Score=41.79 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
-.|+|.|++|+|||+|+.++....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998765
No 457
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.83 E-value=0.92 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..|+|.|++|+|||+|..++...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999873
No 458
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=86.76 E-value=2.5 Score=53.23 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~e 959 (1138)
..-++|.||.|+|||++.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346899999999999999999865
No 459
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=86.73 E-value=1.8 Score=48.94 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh----CCceEEEec
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el----g~~fi~Id~ 969 (1138)
++|+.+|+|+|||..+-+++... +..++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999877776554 555555544
No 460
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.72 E-value=0.38 Score=54.06 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=37.3
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCC
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 474 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~ 474 (1138)
++-|+++||+| .++..||++||+.++..++..|+-.+|-++
T Consensus 10 ~~~i~i~Gptg--sGKt~la~~La~~~~~~iis~Ds~qvY~~~ 50 (316)
T 3foz_A 10 PKAIFLMGPTA--SGKTALAIELRKILPVELISVDSALIYKGM 50 (316)
T ss_dssp CEEEEEECCTT--SCHHHHHHHHHHHSCEEEEECCTTTTBTTC
T ss_pred CcEEEEECCCc--cCHHHHHHHHHHhCCCcEEecccccccccc
Confidence 45789999999 899999999999999999999999898744
No 461
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=86.71 E-value=0.51 Score=47.45 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.5
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHh----CCeEEEeec
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYF----GAKLLIFDS 467 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~----~a~ll~~d~ 467 (1138)
...|+|+||+| .++++|+|+||+.. |...+.++.
T Consensus 38 g~~~~l~G~~G--~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPG--VGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSS--SSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 56899999999 99999999999887 555444443
No 462
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.68 E-value=0.34 Score=55.03 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=36.2
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCC
Q 001150 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 474 (1138)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~ 474 (1138)
-|+|.||.| .++..|+++||+.++..++..|+-.+|-++
T Consensus 42 lIvI~GPTg--sGKTtLa~~LA~~l~~eiIs~Ds~qvYr~m 80 (339)
T 3a8t_A 42 LLVLMGATG--TGKSRLSIDLAAHFPLEVINSDKMQVYKGL 80 (339)
T ss_dssp EEEEECSTT--SSHHHHHHHHHTTSCEEEEECCSSTTBSSC
T ss_pred eEEEECCCC--CCHHHHHHHHHHHCCCcEEcccccccccce
Confidence 699999999 999999999999999999999998888754
No 463
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.53 E-value=0.25 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.4
Q ss_pred ceEEEECCCCCCHHHHHHHHH-HHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVA-TEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA-~el 960 (1138)
.-+.|.||+|+|||+|++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458899999999999999999 765
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.46 E-value=0.46 Score=50.36 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCc
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA-GAN 963 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el-g~~ 963 (1138)
.-|.|.|++|+|||++++.|+..+ +..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 458999999999999999999999 443
No 465
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.31 E-value=0.45 Score=47.43 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.0
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1138)
.-|+|+||+| .++.+++|+||+.++..++.+|.
T Consensus 4 ~~i~l~G~~G--sGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSS--AGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTT--SSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCC--CCHHHHHHHHHHhcCCCeEEecc
Confidence 4699999999 89999999999999998887775
No 466
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.29 E-value=2 Score=43.24 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
-.|+|.|++|+|||+|+..+....
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999998887653
No 467
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.20 E-value=0.25 Score=58.13 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAGA 962 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg~ 962 (1138)
..|+|.|.||+|||++++.||..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46999999999999999999998753
No 468
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=85.88 E-value=3 Score=41.56 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~e 959 (1138)
...|+|.|++|+|||+|+.++...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999754
No 469
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.87 E-value=2.9 Score=42.64 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..|+|.|++|+|||+|+.++....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998654
No 470
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.85 E-value=0.51 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el 960 (1138)
+.-+.|.||+|+|||++++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3568899999999999999999887
No 471
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.82 E-value=0.52 Score=52.44 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC----CeEEEeecccc
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFG----AKLLIFDSHSL 470 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~----a~ll~~d~~~~ 470 (1138)
.+.|||+||+| .+++.||+|||+++. .+.+.+....|
T Consensus 152 ~~~lll~G~~G--tGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMG--IGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 57899999999 999999999999665 66776665443
No 472
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=85.71 E-value=1.3 Score=54.50 Aligned_cols=19 Identities=47% Similarity=0.691 Sum_probs=16.4
Q ss_pred ceEEEECCCCCCHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKA 955 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArA 955 (1138)
..+|+.||+|+|||..+..
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 5799999999999997743
No 473
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.69 E-value=0.44 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg 961 (1138)
-.+|+||.|+|||+|++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998875
No 474
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.63 E-value=0.51 Score=52.81 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 935 PCKGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 935 P~~gILL~GPPGTGKT~LArALA~elg 961 (1138)
+..-+.|.||+|+|||+|++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334578999999999999999999873
No 475
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.62 E-value=0.76 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||+|++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 476
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.59 E-value=0.41 Score=48.15 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.8
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
+.|+|.||+| .++.++||+||+.+|++++-.|
T Consensus 3 ~~I~l~G~~G--sGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPG--SGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTT--SSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCC--CCHHHHHHHHHHHcCCCEEeCc
Confidence 5799999999 8999999999999999876555
No 477
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=85.34 E-value=4 Score=45.98 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~el 960 (1138)
...++|.|++|+|||+|..+++...
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999997643
No 478
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=85.33 E-value=1.7 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q 001150 938 GILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~e 959 (1138)
.|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5999999999999999988753
No 479
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.33 E-value=0.52 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..+++.|++|+|||+|+.+++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 480
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.26 E-value=1.7 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
.-+.|.||||+|||+|.++|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999776
No 481
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.12 E-value=1.1 Score=50.42 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
.-+.|.||+|+|||++++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999999875
No 482
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=85.09 E-value=0.89 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVAT 958 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~ 958 (1138)
..|+|.|++|+|||+|+.++..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999864
No 483
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.99 E-value=0.59 Score=48.00 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..|+|.|++|+|||+|+.+++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998765
No 484
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.96 E-value=0.52 Score=50.77 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=32.2
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccccc
Q 001150 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 471 (1138)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~ 471 (1138)
-|+|.||+| .++.+||++||+++++.++..|....|
T Consensus 3 li~I~G~~G--SGKSTla~~La~~~~~~~i~~D~~~~~ 38 (253)
T 2ze6_A 3 LHLIYGPTC--SGKTDMAIQIAQETGWPVVALDRVQCC 38 (253)
T ss_dssp EEEEECCTT--SSHHHHHHHHHHHHCCCEEECCSGGGC
T ss_pred EEEEECCCC--cCHHHHHHHHHhcCCCeEEeccHHhcc
Confidence 489999999 899999999999999999988875544
No 485
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.89 E-value=0.53 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
.-+.|.|++|+|||+|++.|+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999875
No 486
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=84.88 E-value=2.9 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..|+|.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 487
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.77 E-value=0.82 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el 960 (1138)
.+||.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999777666544
No 488
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=84.66 E-value=2.5 Score=48.81 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred CcccccccchHHHHHHHHHHHhcccCchhhhhc---CCCCCCCceEEEECCCCCCHHHH
Q 001150 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCK---GQLTKPCKGILLFGPPGTGKTML 952 (1138)
Q Consensus 897 ~vsfdDI~Gle~vk~~L~e~V~~pl~~~e~f~~---~~~~rP~~gILL~GPPGTGKT~L 952 (1138)
..+|+++.-.+.+.+.|.+.-. ..+..+.. .... ..+.+++.+|+|+|||..
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~---~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGY---KIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTC---CSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHH
Confidence 4568887766777776655321 11111111 0000 115799999999999983
No 489
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=84.62 E-value=0.52 Score=49.95 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=26.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCceEEEe
Q 001150 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~elg~~fi~Id 968 (1138)
.|-|+|..|+|||++++.++. +|++++..|
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999998 898887655
No 490
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.56 E-value=0.73 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~elg 961 (1138)
..++|.|++|+|||+|+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998863
No 491
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.54 E-value=0.47 Score=47.44 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=28.3
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
+.|+|.||+| .++.+|+|+||+.+++.++-.|
T Consensus 5 ~~i~i~G~~G--sGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMG--SGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CCEEEECCTT--SCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEEcCCC--CCHHHHHHHHHHHcCCCEEccc
Confidence 3699999999 9999999999999998876544
No 492
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.40 E-value=0.52 Score=47.27 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=29.3
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
.+.|+|.||+| .++.+++|+||+++++.++-+|
T Consensus 11 ~~~i~i~G~~G--sGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPG--VGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTT--SSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHhCCeEEEHH
Confidence 45799999999 8999999999999998877655
No 493
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.40 E-value=1.2 Score=48.12 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
+.|+|.|.||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999765
No 494
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.39 E-value=2.6 Score=45.38 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=35.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCceEEEecc-------ccccccccch-----HHHHHHHHHHHhccCCeEEEEc
Q 001150 938 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS-------SITSKWFGEG-----EKYVKAVFSLASKIAPSVIFVD 1002 (1138)
Q Consensus 938 gILL~GPPGTGKT~LArALA~el---g~~fi~Id~s-------eL~s~~iG~~-----E~~I~~lF~~A~k~~PsIIfID 1002 (1138)
-.+++|+.|+|||+.+-.++..+ |..++.+... .+.+.. |.. -.....++..+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 46789999999998555555444 5555544421 111110 000 00002244444 346899999
Q ss_pred CCccc
Q 001150 1003 EVDSM 1007 (1138)
Q Consensus 1003 EID~L 1007 (1138)
|+.-+
T Consensus 98 EaQF~ 102 (234)
T 2orv_A 98 EGQFF 102 (234)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99866
No 495
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.35 E-value=0.73 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH
Q 001150 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 936 ~~gILL~GPPGTGKT~LArALA~e 959 (1138)
...|+|.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999764
No 496
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.33 E-value=1.9 Score=46.38 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.1
Q ss_pred ceEEEECCCCCCHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAK 954 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LAr 954 (1138)
+.+|+.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 468999999999998543
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.11 E-value=0.63 Score=45.01 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..|+|.|++|+|||+|+.++....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 498
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.08 E-value=0.55 Score=48.09 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=28.3
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 001150 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1138)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1138)
..|+|.||+| .++.++||.||+++|.+++-.|
T Consensus 21 ~~I~l~G~~G--sGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPG--AGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTT--SSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhCCcEEehh
Confidence 3699999999 8999999999999998866554
No 499
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.00 E-value=0.59 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH
Q 001150 937 KGILLFGPPGTGKTMLAKAVATE 959 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~e 959 (1138)
..++|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 500
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=83.98 E-value=2.5 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Q 001150 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1138)
Q Consensus 937 ~gILL~GPPGTGKT~LArALA~el 960 (1138)
..|+|.|.+|+|||+|+.++...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998643
Done!