Query 001153
Match_columns 1137
No_of_seqs 478 out of 3022
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:15:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0298 DEAD box-containing he 100.0 8.3E-84 1.8E-88 782.4 21.6 946 46-1137 4-972 (1394)
2 KOG0385 Chromatin remodeling c 100.0 2.2E-81 4.9E-86 729.2 27.3 365 498-926 217-616 (971)
3 KOG0387 Transcription-coupled 100.0 1.7E-75 3.8E-80 684.1 23.9 364 498-922 255-671 (923)
4 KOG0384 Chromodomain-helicase 100.0 8.2E-76 1.8E-80 710.0 19.0 471 498-1042 420-951 (1373)
5 KOG0392 SNF2 family DNA-depend 100.0 2.4E-74 5.3E-79 692.8 21.3 377 498-927 1031-1472(1549)
6 KOG0389 SNF2 family DNA-depend 100.0 4E-71 8.7E-76 646.3 16.6 375 498-929 448-908 (941)
7 PLN03142 Probable chromatin-re 100.0 6.5E-69 1.4E-73 674.1 29.1 365 498-926 219-616 (1033)
8 KOG0391 SNF2 family DNA-depend 100.0 1.7E-68 3.7E-73 633.4 18.5 233 498-788 665-904 (1958)
9 KOG1002 Nucleotide excision re 100.0 1.2E-66 2.5E-71 580.7 26.7 392 499-927 232-767 (791)
10 KOG4439 RNA polymerase II tran 100.0 4.6E-66 1E-70 596.6 27.7 399 500-926 385-875 (901)
11 KOG0388 SNF2 family DNA-depend 100.0 3.6E-67 7.7E-72 601.6 15.9 357 498-923 617-1168(1185)
12 KOG0386 Chromatin remodeling c 100.0 1.6E-64 3.4E-69 602.6 17.8 365 498-923 444-852 (1157)
13 KOG0390 DNA repair protein, SN 100.0 5.2E-56 1.1E-60 535.4 26.9 367 498-926 298-724 (776)
14 COG0553 HepA Superfamily II DN 100.0 9.6E-53 2.1E-57 537.4 21.5 373 498-923 390-836 (866)
15 KOG1001 Helicase-like transcri 100.0 6E-52 1.3E-56 503.7 27.2 370 497-924 188-665 (674)
16 KOG1015 Transcription regulato 100.0 2.1E-49 4.5E-54 465.4 22.2 385 497-919 727-1287(1567)
17 PF00176 SNF2_N: SNF2 family N 100.0 3.6E-46 7.8E-51 418.5 18.2 241 499-789 59-299 (299)
18 KOG1016 Predicted DNA helicase 100.0 3.6E-41 7.8E-46 389.7 17.6 393 498-921 312-861 (1387)
19 KOG1000 Chromatin remodeling p 100.0 1.9E-39 4E-44 364.4 20.0 350 499-931 242-627 (689)
20 PRK04914 ATP-dependent helicas 100.0 2.4E-38 5.2E-43 397.6 29.7 342 498-923 199-619 (956)
21 KOG0383 Predicted helicase [Ge 100.0 1.5E-39 3.2E-44 390.2 11.8 314 498-877 345-691 (696)
22 TIGR00603 rad25 DNA repair hel 99.9 4.6E-23 1E-27 252.5 23.0 298 499-926 299-622 (732)
23 PRK13766 Hef nuclease; Provisi 99.8 5E-18 1.1E-22 216.1 22.5 367 499-917 59-487 (773)
24 COG1061 SSL2 DNA or RNA helica 99.5 3.5E-12 7.6E-17 152.3 23.3 298 500-920 82-405 (442)
25 PHA02558 uvsW UvsW helicase; P 99.3 6.1E-11 1.3E-15 144.1 22.6 100 499-638 159-261 (501)
26 PF04851 ResIII: Type III rest 99.3 1.1E-11 2.4E-16 128.8 13.9 124 500-637 52-183 (184)
27 cd00046 DEXDc DEAD-like helica 99.3 1.6E-11 3.5E-16 120.1 11.8 111 498-636 30-144 (144)
28 smart00487 DEXDc DEAD-like hel 99.3 1.6E-11 3.5E-16 127.6 12.4 114 499-639 55-173 (201)
29 PRK11448 hsdR type I restricti 98.9 6.6E-09 1.4E-13 135.5 14.3 117 499-640 464-598 (1123)
30 COG1111 MPH1 ERCC4-like helica 98.9 1.1E-07 2.3E-12 111.0 22.2 127 499-654 59-189 (542)
31 KOG1123 RNA polymerase II tran 98.9 2.1E-09 4.6E-14 123.3 6.1 126 499-652 346-472 (776)
32 cd00268 DEADc DEAD-box helicas 98.7 1.6E-07 3.5E-12 100.1 14.1 111 499-637 70-185 (203)
33 TIGR00348 hsdR type I site-spe 98.6 2.3E-07 4.9E-12 116.6 13.6 110 499-639 294-405 (667)
34 TIGR00643 recG ATP-dependent D 98.6 4.2E-07 9.1E-12 113.7 14.0 113 499-641 285-401 (630)
35 PF00270 DEAD: DEAD/DEAH box h 98.5 5.8E-07 1.3E-11 92.5 11.7 118 499-644 45-169 (169)
36 KOG0354 DEAD-box like helicase 98.5 1.5E-05 3.2E-10 98.3 23.6 126 498-653 106-237 (746)
37 PF13872 AAA_34: P-loop contai 98.4 2.6E-06 5.5E-11 95.6 14.2 142 552-725 136-302 (303)
38 PRK10917 ATP-dependent DNA hel 98.3 2.5E-06 5.4E-11 107.7 12.4 112 499-641 311-424 (681)
39 TIGR00614 recQ_fam ATP-depende 98.3 5.2E-06 1.1E-10 100.6 12.9 129 499-653 52-189 (470)
40 COG4096 HsdR Type I site-speci 98.3 4.3E-06 9.4E-11 102.8 11.8 105 499-638 216-322 (875)
41 PRK01172 ski2-like helicase; P 98.2 1.1E-05 2.4E-10 102.0 15.6 120 499-654 66-192 (674)
42 PRK11192 ATP-dependent RNA hel 98.2 9.8E-06 2.1E-10 97.1 14.2 118 499-643 74-195 (434)
43 PRK10689 transcription-repair 98.2 6.7E-06 1.5E-10 108.2 13.4 112 499-641 650-763 (1147)
44 TIGR00580 mfd transcription-re 98.2 9.4E-06 2E-10 104.8 13.4 110 499-641 501-614 (926)
45 PRK02362 ski2-like helicase; P 98.2 1.9E-05 4.1E-10 100.9 16.0 115 499-646 68-189 (737)
46 PRK10590 ATP-dependent RNA hel 98.1 2.2E-05 4.8E-10 94.8 14.6 111 500-637 77-191 (456)
47 PRK00254 ski2-like helicase; P 98.1 3.3E-05 7.2E-10 98.4 16.4 115 499-646 69-187 (720)
48 TIGR01389 recQ ATP-dependent D 98.1 2.3E-05 5E-10 97.7 13.5 127 499-652 54-188 (591)
49 PRK11776 ATP-dependent RNA hel 98.1 2.7E-05 5.9E-10 94.1 13.7 110 500-637 74-189 (460)
50 PRK11057 ATP-dependent DNA hel 98.1 3E-05 6.4E-10 96.9 13.7 128 499-653 66-201 (607)
51 PTZ00424 helicase 45; Provisio 98.1 3.9E-05 8.5E-10 90.7 14.0 111 499-637 97-212 (401)
52 COG1204 Superfamily II helicas 98.0 3.3E-05 7.2E-10 97.9 13.3 122 499-656 77-205 (766)
53 PLN00206 DEAD-box ATP-dependen 98.0 6.4E-05 1.4E-09 92.3 14.4 112 499-637 197-311 (518)
54 PTZ00110 helicase; Provisional 98.0 6.1E-05 1.3E-09 93.0 13.9 110 500-636 205-318 (545)
55 PRK04837 ATP-dependent RNA hel 97.9 9.7E-05 2.1E-09 88.4 14.4 111 499-637 84-201 (423)
56 PRK01297 ATP-dependent RNA hel 97.9 0.00014 3.1E-09 88.3 14.1 113 499-637 163-281 (475)
57 PRK11634 ATP-dependent RNA hel 97.8 0.00018 3.8E-09 90.2 14.7 111 499-636 75-190 (629)
58 PRK04537 ATP-dependent RNA hel 97.8 0.00017 3.8E-09 89.4 14.4 112 499-637 85-203 (572)
59 PRK09401 reverse gyrase; Revie 97.7 0.00031 6.7E-09 93.2 15.1 88 499-611 124-214 (1176)
60 PRK05580 primosome assembly pr 97.7 0.00025 5.5E-09 89.7 13.4 107 499-638 191-306 (679)
61 COG1200 RecG RecG-like helicas 97.7 0.00013 2.8E-09 89.0 10.2 112 500-642 313-427 (677)
62 TIGR03158 cas3_cyano CRISPR-as 97.7 0.0004 8.6E-09 81.4 14.0 125 500-638 41-193 (357)
63 PRK13767 ATP-dependent helicas 97.7 0.0004 8.6E-09 90.3 15.2 120 499-645 85-224 (876)
64 COG4889 Predicted helicase [Ge 97.7 6.1E-05 1.3E-09 92.1 6.8 42 596-637 302-351 (1518)
65 COG1205 Distinct helicase fami 97.6 0.00035 7.6E-09 89.9 12.1 114 499-635 116-241 (851)
66 TIGR03817 DECH_helic helicase/ 97.6 0.00073 1.6E-08 86.3 14.6 113 499-636 82-204 (742)
67 KOG0298 DEAD box-containing he 97.5 3.2E-05 6.8E-10 98.4 1.6 107 815-921 1214-1338(1394)
68 KOG0331 ATP-dependent RNA heli 97.4 0.0036 7.7E-08 75.5 17.2 96 500-624 167-267 (519)
69 TIGR00595 priA primosomal prot 97.4 0.00063 1.4E-08 83.2 10.5 107 499-638 26-141 (505)
70 PHA02653 RNA helicase NPH-II; 97.3 0.0065 1.4E-07 76.5 18.6 104 499-637 223-332 (675)
71 TIGR01587 cas3_core CRISPR-ass 97.3 0.00096 2.1E-08 77.8 10.0 120 499-637 30-166 (358)
72 PLN03137 ATP-dependent DNA hel 97.3 0.0018 3.8E-08 84.0 12.7 131 499-652 501-642 (1195)
73 PF07652 Flavi_DEAD: Flaviviru 97.2 0.0024 5.2E-08 64.8 10.1 102 498-638 33-138 (148)
74 PRK15483 type III restriction- 97.1 0.0052 1.1E-07 79.0 15.1 132 499-638 90-240 (986)
75 TIGR03714 secA2 accessory Sec 97.0 0.0028 6E-08 79.9 11.1 118 500-648 113-232 (762)
76 KOG0952 DNA/RNA helicase MER3/ 96.9 0.0066 1.4E-07 76.8 12.1 136 500-667 166-311 (1230)
77 COG1197 Mfd Transcription-repa 96.8 0.0066 1.4E-07 78.5 11.5 113 499-642 644-758 (1139)
78 TIGR01054 rgy reverse gyrase. 96.7 0.0046 1E-07 82.4 10.3 86 499-612 122-213 (1171)
79 TIGR02621 cas3_GSU0051 CRISPR- 96.6 0.018 3.8E-07 73.6 13.7 39 599-637 172-216 (844)
80 KOG0350 DEAD-box ATP-dependent 96.5 0.0077 1.7E-07 71.0 8.3 97 497-614 214-311 (620)
81 COG1201 Lhr Lhr-like helicases 96.0 0.042 9.2E-07 70.0 11.8 125 500-654 75-206 (814)
82 PRK14701 reverse gyrase; Provi 95.7 0.032 6.9E-07 76.5 9.9 88 499-611 123-213 (1638)
83 PRK09200 preprotein translocas 95.5 0.048 1E-06 69.6 9.9 102 499-636 120-226 (790)
84 PF13086 AAA_11: AAA domain; P 95.5 0.23 5E-06 53.4 14.0 36 598-638 192-228 (236)
85 PRK09751 putative ATP-dependen 95.4 0.079 1.7E-06 71.8 11.5 119 499-646 38-177 (1490)
86 TIGR00963 secA preprotein tran 95.1 0.067 1.4E-06 67.6 9.1 100 802-902 386-512 (745)
87 COG0610 Type I site-specific r 94.6 0.13 2.9E-06 67.7 10.5 114 500-643 305-420 (962)
88 PF11496 HDA2-3: Class II hist 94.5 0.056 1.2E-06 61.8 5.9 126 707-845 4-140 (297)
89 PRK09694 helicase Cas3; Provis 94.4 0.23 5E-06 64.6 11.8 76 553-645 411-489 (878)
90 TIGR01407 dinG_rel DnaQ family 94.2 0.32 6.9E-06 63.7 12.7 42 550-613 414-455 (850)
91 PRK12898 secA preprotein trans 93.7 0.63 1.4E-05 58.5 13.2 116 499-636 145-269 (656)
92 PRK12899 secA preprotein trans 93.5 0.41 8.9E-06 61.8 11.3 112 500-648 137-252 (970)
93 KOG1513 Nuclear helicase MOP-3 93.2 0.29 6.2E-06 60.8 8.8 150 551-730 367-541 (1300)
94 COG0513 SrmB Superfamily II DN 93.0 0.57 1.2E-05 57.9 11.3 109 501-637 102-216 (513)
95 COG1203 CRISPR-associated heli 92.9 0.51 1.1E-05 60.8 11.1 131 499-638 247-382 (733)
96 KOG0330 ATP-dependent RNA heli 92.8 0.48 1E-05 55.0 9.3 118 500-644 131-252 (476)
97 TIGR01970 DEAH_box_HrpB ATP-de 92.6 0.43 9.3E-06 61.9 9.8 110 499-643 46-163 (819)
98 PF00628 PHD: PHD-finger; Int 91.8 0.057 1.2E-06 44.9 0.4 30 417-450 4-33 (51)
99 PRK11664 ATP-dependent RNA hel 91.6 0.73 1.6E-05 59.9 10.3 110 499-643 49-166 (812)
100 COG1110 Reverse gyrase [DNA re 91.6 0.4 8.6E-06 61.6 7.4 86 499-609 126-214 (1187)
101 KOG0338 ATP-dependent RNA heli 91.1 1.8 3.9E-05 51.9 11.7 121 497-647 251-378 (691)
102 KOG1802 RNA helicase nonsense 90.9 0.53 1.1E-05 57.8 7.3 36 498-537 454-490 (935)
103 PRK13104 secA preprotein trans 90.9 0.72 1.6E-05 59.5 9.0 101 500-636 125-229 (896)
104 KOG0947 Cytoplasmic exosomal R 90.8 0.72 1.6E-05 58.8 8.6 87 511-635 354-443 (1248)
105 COG4098 comFA Superfamily II D 90.7 3.3 7.2E-05 47.8 12.9 41 598-638 202-245 (441)
106 KOG0335 ATP-dependent RNA heli 90.6 0.95 2.1E-05 54.5 9.1 86 499-611 153-239 (482)
107 COG0514 RecQ Superfamily II DN 90.2 0.48 1E-05 58.6 6.4 130 498-654 57-194 (590)
108 PRK10536 hypothetical protein; 89.6 2.1 4.4E-05 48.2 10.1 41 599-641 177-217 (262)
109 COG3587 Restriction endonuclea 87.6 1.6 3.4E-05 55.5 8.2 122 499-635 105-241 (985)
110 PRK13103 secA preprotein trans 87.4 1.5 3.2E-05 56.7 8.1 102 499-636 124-229 (913)
111 PRK11131 ATP-dependent RNA hel 86.7 3.9 8.4E-05 55.3 11.6 61 552-636 163-228 (1294)
112 KOG0343 RNA Helicase [RNA proc 86.3 1.9 4E-05 52.3 7.5 120 500-647 143-266 (758)
113 COG4581 Superfamily II RNA hel 86.0 4.1 8.9E-05 53.6 11.1 64 550-635 203-269 (1041)
114 PRK13107 preprotein translocas 85.9 3.3 7.2E-05 53.6 10.1 113 499-649 124-240 (908)
115 PRK04296 thymidine kinase; Pro 85.9 4.3 9.4E-05 43.4 9.7 36 598-635 78-114 (190)
116 cd00079 HELICc Helicase superf 85.1 0.46 1E-05 46.2 1.7 81 822-902 28-130 (131)
117 KOG0951 RNA helicase BRR2, DEA 84.1 5 0.00011 53.0 10.3 115 499-646 365-492 (1674)
118 smart00249 PHD PHD zinc finger 83.9 0.73 1.6E-05 36.7 2.0 23 428-450 11-33 (47)
119 PRK12904 preprotein translocas 83.8 2.9 6.3E-05 54.0 8.3 111 500-648 124-238 (830)
120 KOG0336 ATP-dependent RNA heli 83.7 4.1 8.8E-05 47.8 8.5 109 498-635 294-406 (629)
121 KOG1132 Helicase of the DEAD s 83.2 4 8.6E-05 52.2 8.8 23 359-381 42-64 (945)
122 PF06733 DEAD_2: DEAD_2; Inte 82.4 1 2.2E-05 47.2 3.0 46 547-613 114-160 (174)
123 PF09848 DUF2075: Uncharacteri 81.1 6.6 0.00014 46.1 9.5 17 596-612 81-97 (352)
124 TIGR01967 DEAH_box_HrpA ATP-de 80.2 6.5 0.00014 53.3 9.8 62 552-636 156-221 (1283)
125 KOG1803 DNA helicase [Replicat 79.8 6.2 0.00014 48.7 8.6 40 594-638 354-393 (649)
126 PRK14873 primosome assembly pr 79.1 6.7 0.00015 50.0 9.1 107 499-637 189-304 (665)
127 PRK12326 preprotein translocas 78.1 7.5 0.00016 49.5 8.9 103 499-637 120-226 (764)
128 TIGR00376 DNA helicase, putati 77.8 19 0.0004 46.0 12.5 41 593-638 356-396 (637)
129 KOG1844 PHD Zn-finger proteins 74.3 1.5 3.2E-05 54.1 1.4 36 412-450 85-120 (508)
130 COG1202 Superfamily II helicas 73.5 9.6 0.00021 46.8 7.7 126 498-649 261-393 (830)
131 KOG0348 ATP-dependent RNA heli 72.7 12 0.00027 45.5 8.3 96 501-623 214-317 (708)
132 smart00489 DEXDc3 DEAD-like he 72.5 2.4 5.3E-05 48.4 2.6 44 548-612 207-250 (289)
133 smart00488 DEXDc2 DEAD-like he 72.5 2.4 5.3E-05 48.4 2.6 44 548-612 207-250 (289)
134 COG0556 UvrB Helicase subunit 71.4 6 0.00013 48.1 5.4 32 499-530 58-90 (663)
135 KOG1973 Chromatin remodeling p 70.1 2 4.4E-05 48.7 1.2 49 411-488 217-268 (274)
136 PRK07003 DNA polymerase III su 69.4 25 0.00055 45.3 10.5 59 597-657 118-179 (830)
137 PF13401 AAA_22: AAA domain; P 69.0 4.8 0.0001 39.4 3.5 35 600-636 89-125 (131)
138 KOG0345 ATP-dependent RNA heli 67.8 24 0.00052 42.6 9.1 110 500-635 81-197 (567)
139 PF02399 Herpes_ori_bp: Origin 67.0 25 0.00055 45.3 9.8 101 499-636 79-190 (824)
140 PRK11747 dinG ATP-dependent DN 66.8 4.2 9.1E-05 52.3 3.2 48 548-614 215-262 (697)
141 PF07517 SecA_DEAD: SecA DEAD- 65.6 56 0.0012 37.1 11.4 87 499-610 119-209 (266)
142 PRK12906 secA preprotein trans 65.4 13 0.00029 48.0 7.1 87 499-610 122-212 (796)
143 TIGR02881 spore_V_K stage V sp 64.4 16 0.00036 40.9 7.0 20 359-378 44-63 (261)
144 KOG0926 DEAH-box RNA helicase 64.2 17 0.00036 46.4 7.3 34 553-609 350-383 (1172)
145 PRK14960 DNA polymerase III su 64.1 37 0.0008 43.3 10.4 60 598-657 118-178 (702)
146 COG1198 PriA Primosomal protei 64.1 52 0.0011 42.5 11.9 106 499-637 246-360 (730)
147 TIGR00604 rad3 DNA repair heli 62.0 5 0.00011 51.7 2.5 64 515-613 172-235 (705)
148 PF07227 DUF1423: Protein of u 61.4 6 0.00013 47.2 2.8 76 413-521 129-207 (446)
149 TIGR03117 cas_csf4 CRISPR-asso 60.7 6.5 0.00014 49.7 3.2 43 550-614 180-222 (636)
150 KOG0339 ATP-dependent RNA heli 59.6 41 0.0009 41.0 9.1 112 495-635 292-410 (731)
151 KOG4284 DEAD box protein [Tran 58.3 42 0.00092 42.0 9.1 120 496-644 91-216 (980)
152 PF02562 PhoH: PhoH-like prote 57.5 10 0.00022 41.4 3.5 44 597-642 118-161 (205)
153 PRK14958 DNA polymerase III su 55.7 66 0.0014 40.0 10.6 48 597-646 118-168 (509)
154 KOG0333 U5 snRNP-like RNA heli 55.6 25 0.00055 42.9 6.6 86 500-612 324-410 (673)
155 PRK12902 secA preprotein trans 55.4 36 0.00079 44.5 8.4 87 499-610 127-217 (939)
156 KOG0948 Nuclear exosomal RNA h 53.2 28 0.00061 44.2 6.7 43 550-614 209-251 (1041)
157 PRK14964 DNA polymerase III su 49.5 87 0.0019 38.7 10.1 39 598-638 116-157 (491)
158 PRK05707 DNA polymerase III su 48.3 1.4E+02 0.003 35.0 11.2 21 361-381 26-46 (328)
159 PRK07246 bifunctional ATP-depe 47.7 13 0.00029 48.6 3.0 43 548-613 409-451 (820)
160 TIGR00269 conserved hypothetic 47.1 36 0.00078 32.9 5.2 62 1063-1126 36-101 (104)
161 PRK08074 bifunctional ATP-depe 46.8 13 0.00028 49.4 2.8 44 548-613 427-470 (928)
162 KOG0347 RNA helicase [RNA proc 46.4 55 0.0012 40.4 7.5 64 500-568 265-329 (731)
163 KOG0340 ATP-dependent RNA heli 45.9 91 0.002 36.7 8.8 121 500-644 77-201 (442)
164 PRK07764 DNA polymerase III su 44.9 1.2E+02 0.0026 40.0 10.9 20 361-380 41-60 (824)
165 KOG4323 Polycomb-like PHD Zn-f 44.2 8.2 0.00018 46.5 0.3 53 415-487 171-223 (464)
166 KOG0342 ATP-dependent RNA heli 44.1 61 0.0013 39.5 7.3 110 500-635 156-270 (543)
167 KOG0353 ATP-dependent DNA heli 43.5 33 0.00072 40.0 4.9 131 498-649 134-273 (695)
168 CHL00122 secA preprotein trans 43.2 56 0.0012 42.7 7.4 87 499-610 118-208 (870)
169 COG5034 TNG2 Chromatin remodel 42.7 11 0.00024 41.8 1.0 49 410-487 218-269 (271)
170 TIGR02880 cbbX_cfxQ probable R 42.2 40 0.00087 38.5 5.5 21 359-379 60-80 (284)
171 KOG0351 ATP-dependent DNA heli 42.1 39 0.00085 44.8 5.9 140 496-657 302-451 (941)
172 KOG1133 Helicase of the DEAD s 41.2 14 0.0003 46.4 1.6 57 525-614 308-364 (821)
173 PF13173 AAA_14: AAA domain 39.7 31 0.00068 34.1 3.6 39 599-638 62-100 (128)
174 PRK14965 DNA polymerase III su 35.9 1.2E+02 0.0027 38.3 8.8 20 361-380 42-61 (576)
175 CHL00181 cbbX CbbX; Provisiona 35.9 61 0.0013 37.1 5.7 20 360-379 62-81 (287)
176 PRK07940 DNA polymerase III su 34.7 78 0.0017 38.0 6.5 22 359-380 38-59 (394)
177 TIGR00596 rad1 DNA repair prot 33.7 2.6E+02 0.0057 36.9 11.4 65 551-638 6-74 (814)
178 PF00271 Helicase_C: Helicase 33.4 43 0.00092 29.7 3.2 17 879-895 61-78 (78)
179 COG1198 PriA Primosomal protei 33.3 68 0.0015 41.5 6.0 74 477-565 473-547 (730)
180 PRK12900 secA preprotein trans 32.9 1.3E+02 0.0028 40.1 8.3 99 511-646 196-294 (1025)
181 PRK06647 DNA polymerase III su 32.4 2E+02 0.0042 36.4 9.7 20 361-380 42-61 (563)
182 PHA00673 acetyltransferase dom 32.3 76 0.0016 33.1 5.1 45 598-642 87-134 (154)
183 COG1643 HrpA HrpA-like helicas 31.8 1.6E+02 0.0034 38.9 8.9 23 359-381 67-89 (845)
184 KOG0949 Predicted helicase, DE 31.7 92 0.002 41.1 6.5 142 476-649 537-682 (1330)
185 PF13177 DNA_pol3_delta2: DNA 31.4 4.5E+02 0.0098 27.2 10.8 21 361-381 23-43 (162)
186 KOG0328 Predicted ATP-dependen 30.3 2.7E+02 0.0058 32.0 9.1 125 499-655 96-225 (400)
187 PLN03025 replication factor C 30.3 71 0.0015 37.0 5.1 58 598-655 99-157 (319)
188 TIGR00595 priA primosomal prot 29.6 1E+02 0.0023 38.2 6.6 52 508-561 269-321 (505)
189 PRK12901 secA preprotein trans 29.3 1.8E+02 0.004 38.9 8.8 101 511-647 227-327 (1112)
190 PF12387 Peptidase_C74: Pestiv 28.8 54 0.0012 34.4 3.2 65 1060-1124 103-182 (200)
191 PRK14971 DNA polymerase III su 28.5 4.3E+02 0.0092 33.8 11.8 59 598-658 121-182 (614)
192 TIGR00631 uvrb excinuclease AB 28.5 93 0.002 39.9 6.1 31 499-531 55-86 (655)
193 COG4066 Uncharacterized protei 28.4 21 0.00044 36.6 0.2 30 1097-1126 125-159 (165)
194 PF13604 AAA_30: AAA domain; P 28.3 71 0.0015 34.3 4.4 38 599-638 94-132 (196)
195 KOG1805 DNA replication helica 27.9 4.6E+02 0.01 35.0 11.7 41 593-638 791-831 (1100)
196 PRK14963 DNA polymerase III su 27.9 3.4E+02 0.0074 33.8 10.6 20 361-380 40-59 (504)
197 COG1702 PhoH Phosphate starvat 27.6 32 0.00068 40.2 1.5 41 598-641 243-284 (348)
198 KOG3259 Peptidyl-prolyl cis-tr 27.3 44 0.00095 34.3 2.3 60 322-384 8-67 (163)
199 PF05876 Terminase_GpA: Phage 25.9 2.2E+02 0.0047 35.9 8.5 56 592-647 128-190 (557)
200 PRK14948 DNA polymerase III su 25.2 3.7E+02 0.0079 34.5 10.4 22 360-381 41-62 (620)
201 KOG0337 ATP-dependent RNA heli 24.8 1E+02 0.0023 37.0 5.0 106 499-636 91-205 (529)
202 COG1875 NYN ribonuclease and A 24.7 60 0.0013 38.4 3.1 40 598-639 351-390 (436)
203 PRK12903 secA preprotein trans 24.3 2.1E+02 0.0045 37.9 7.9 100 802-903 407-535 (925)
204 COG4646 DNA methylase [Transcr 24.2 40 0.00087 40.5 1.6 32 625-656 472-503 (637)
205 KOG0920 ATP-dependent RNA heli 24.0 5.1E+02 0.011 34.6 11.4 51 1064-1114 709-772 (924)
206 PF07496 zf-CW: CW-type Zinc F 23.6 27 0.00057 29.3 -0.0 15 430-444 2-16 (50)
207 PRK07471 DNA polymerase III su 22.4 4.5E+02 0.0098 31.3 9.9 21 361-381 45-65 (365)
208 TIGR01447 recD exodeoxyribonuc 21.4 86 0.0019 39.7 3.8 40 597-638 258-297 (586)
209 PF12340 DUF3638: Protein of u 21.4 1.7E+02 0.0037 32.6 5.6 23 500-522 72-94 (229)
210 KOG0326 ATP-dependent RNA heli 21.2 5.6E+02 0.012 30.0 9.6 108 498-635 153-267 (459)
211 COG1199 DinG Rad3-related DNA 21.2 73 0.0016 40.7 3.2 45 550-614 192-236 (654)
No 1
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=8.3e-84 Score=782.35 Aligned_cols=946 Identities=26% Similarity=0.286 Sum_probs=726.7
Q ss_pred CCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCCCcc
Q 001153 46 VDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLL 120 (1137)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1137)
++.|+.++.+.+...+. +..+..++|++.++....+ +++...-+..++..+ +|+.|++.+||.+++.||||+.
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~~ 81 (1394)
T KOG0298|consen 4 KYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRNN 81 (1394)
T ss_pred ccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhcccC
Confidence 44555555554433322 4788999999999988776 455555555555544 9999999999999999999999
Q ss_pred cCCcchhhHHHHhhccccceeeEEEecccCCCCcccchhhhhhhcceEEEeecCCcCcccCcccceeeeeeccchhhhhh
Q 001153 121 SSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACE 200 (1137)
Q Consensus 121 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~ 200 (1137)
++-+++++++......+ +.....++-+|+++.++.++.++...+-+++++-..+ ........+++.-+...++.|.
T Consensus 82 s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~~ 157 (1394)
T KOG0298|consen 82 SPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSCI 157 (1394)
T ss_pred CccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhhh
Confidence 99999999988777777 7888999999999999999999999998877763222 3344456778888888999999
Q ss_pred hhcccchHHHHHHHHHHhhhcCCcccCcccccccccccchhhhhhccccccccccccCCCCCHHHHHHHcccCCCCCCcc
Q 001153 201 SLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLE 280 (1137)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~i~~~~~~~~~~ 280 (1137)
..+.++.+-|++.|...|.|.++..++....|+...+... .........+-........||-..++..+.+........
T Consensus 158 ~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~~ 236 (1394)
T KOG0298|consen 158 LVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERSL 236 (1394)
T ss_pred HhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccCc
Confidence 9999999999999999999999999988877775433111 001111111112222345567666777666544433333
Q ss_pred CCCCCccCCChHHHHHHHHHHHHcccCCCCC------CchhhcccccCCCCCCccccCccccceeccCCCcccCCCCCCC
Q 001153 281 EDLPDLLPLLRPYQRRAAYWMVQREKGDSAS------SSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTS 354 (1137)
Q Consensus 281 ~~~p~L~~~LrPyQ~~aV~WMl~RE~~~~~~------~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~ 354 (1137)
+.+..+.+++|+||.+++.||.+||..-... ....+..+...++-.++.+.+-+..+ +..
T Consensus 237 D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l--------------~~e 302 (1394)
T KOG0298|consen 237 DLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEEL--------------PKE 302 (1394)
T ss_pred hHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccc--------------hhc
Confidence 3345688999999999999999999854221 01111111111111111111111111 122
Q ss_pred CCcccceeecCCCccHHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHhhhhhhhhhhccccccccccccccccc
Q 001153 355 SYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQC 434 (1137)
Q Consensus 355 ~~~rGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~c~~~~~~~~~~~~~v~C 434 (1137)
+...||.+|||||||||++-+|++..|+.+... ++........|.|+...+...+.+.|++|
T Consensus 303 ~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~~ 364 (1394)
T KOG0298|consen 303 SLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKDE 364 (1394)
T ss_pred cCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhhH
Confidence 345689999999999999999999999877321 23444556778888888888888888888
Q ss_pred cccccccccc-------ccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhhhccCCCCCCCcEEEEeCC
Q 001153 435 DICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPA 507 (1137)
Q Consensus 435 ~~c~~w~h~~-------Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~ 507 (1137)
..|..|.++. |-|+.-... . ..........+.|..|.+.....+.+..+|+||||||.
T Consensus 365 ~~~~~~~~~g~~~~~ade~~~qk~~~--------------~-l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~ 429 (1394)
T KOG0298|consen 365 VLCSGDKKHGKRVQCADEMGWQKTSE--------------K-LILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN 429 (1394)
T ss_pred HhhcCCccCCcceeehhhhhccchHH--------------H-HHHHHhcccccchhhhhHHHhcccceeecCceEEECcH
Confidence 8888887764 222211100 0 01112235556677788888888889999999999999
Q ss_pred chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccC
Q 001153 508 PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRY 587 (1137)
Q Consensus 508 SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~ 587 (1137)
+++.||-.||.+|+++ .++|+.|.|.++.... .+..+.+||||+|||++|+.++.|. ...++.|.+|++++|
T Consensus 430 aIl~QW~~EI~kH~~~-~lKv~~Y~Girk~~~~-----~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr~ 501 (1394)
T KOG0298|consen 430 AILMQWFEEIHKHISS-LLKVLLYFGIRKTFWL-----SPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSRY 501 (1394)
T ss_pred HHHHHHHHHHHHhccc-cceEEEEechhhhccc-----CchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccCC
Confidence 9999999999999985 3799999999877543 4588899999999999999999875 567889999999999
Q ss_pred CCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCCchhhhhhhhc
Q 001153 588 PVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIR 667 (1137)
Q Consensus 588 ~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~ 667 (1137)
+.+++||..+.|||||||||||+.+..|++++|+.+|++.|||++||||||+ ++|||+||.||+..||+...+|.+.+.
T Consensus 502 ~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~ 580 (1394)
T KOG0298|consen 502 MRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVD 580 (1394)
T ss_pred CCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred CCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 001153 668 DPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILK 747 (1137)
Q Consensus 668 ~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~ 747 (1137)
.++... .....+..++...++|+.|.+|..++.+||+.+.+.++.+++.|.++|+..+..|+.+++..+..++.+.+.
T Consensus 581 ~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~ 658 (1394)
T KOG0298|consen 581 KAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLD 658 (1394)
T ss_pred HHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccc
Confidence 877654 455678899999999999999999999999999999999999999999999999999999888887766542
Q ss_pred ccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHH
Q 001153 748 RNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVM 827 (1137)
Q Consensus 748 r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~~~~~e~eea~rkvLi 827 (1137)
. ..+.+.+++.....++.+|++|||+||||+++.+++.+.+.. +++|+|..|+.+...++.+..|....
T Consensus 659 ~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~~ 727 (1394)
T KOG0298|consen 659 N---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLAS 727 (1394)
T ss_pred c---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 1 122234567778899999999999999999999988877555 89999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHhhh-cCCCCcCeeEEecCCcCCcchhhhhhhhhhcCCCCceEE
Q 001153 828 ALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDF-RLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCS 902 (1137)
Q Consensus 828 fsq~~a~L~iLe~~l~~a----~~~y~~~l~~~~~~~~~f-~~D~~~~lh~~~Nl~dwnp~~d~QA~r~~riGQ~~~v~v 902 (1137)
.+++++.+..+.+++..+ ...|+..+....+..++. -.|...+.|-.+++. ++.
T Consensus 728 ~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~--~~~------------------- 786 (1394)
T KOG0298|consen 728 SKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLL--QAS------------------- 786 (1394)
T ss_pred HhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhh--ccc-------------------
Confidence 999999999999988853 445555555443332221 123333333344333 110
Q ss_pred EEcccCCcccccchhHhhhhccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCcCChhhHHHHHHHHHHHHh
Q 001153 903 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYL 982 (1137)
Q Consensus 903 ~rl~~~~tiee~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~l~~~yl 982 (1137)
.+-.-+......++++.-.... .+ ++....|.+ -.+.--|..++++|+
T Consensus 787 -----~~~~sd~~~~~~~~~~~~~~~s-~~--------------~~~~~~d~~------------~~~~~~~q~~~~kl~ 834 (1394)
T KOG0298|consen 787 -----SLAPSDRKLTELEHKKYQAQMS-RL--------------EWKYLEDET------------RVLYSLLQDLNEKLE 834 (1394)
T ss_pred -----cccchhhhHHHHHHHhhhhhhc-cc--------------cchhhchhh------------HHHHHHHHHHHHHHH
Confidence 0000011111122222111111 00 011111111 135667899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhhhcCccchHHHHHHHHHHhhcCccccchhhhcccccCc
Q 001153 983 SGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSI 1062 (1137)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1137)
+++..+...++.+|...+.++.+.++.++.....||++.....+.+.++..+|-. ++.+++.+
T Consensus 835 s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLra-----------------i~~~~~~i 897 (1394)
T KOG0298|consen 835 SVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELRA-----------------IAFRARFI 897 (1394)
T ss_pred HHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHHH-----------------HHhhhhcc
Confidence 9999999999999999999999999999999999999999999999888777762 67789999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCHhHhhhcccCcccccCCCCCccccccchhhHHHHhhccC
Q 001153 1063 SGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQVCYSNLL 1137 (1137)
Q Consensus 1063 ~~l~~~l~~~l~~l~~~r~~~~~~~~~~~~~~~~p~~~dv~~~~~C~~c~~~~~g~~C~~C~~~~~f~~ye~~l~ 1137 (1137)
.+++..|++...+|..++..+..++.+|++.++++...++.+...|..|-....++.|.+|.+|..++.|+++.|
T Consensus 898 ~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~ 972 (1394)
T KOG0298|consen 898 HIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHR 972 (1394)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.2e-81 Score=729.21 Aligned_cols=365 Identities=23% Similarity=0.342 Sum_probs=308.7
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.||+||+||.|++.||.+||.+|+| ++++++|+|.+..+....+ +.-.-..+||+||||++..++.
T Consensus 217 ~GPfLVi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r--~~~~~~~fdV~iTsYEi~i~dk---------- 282 (971)
T KOG0385|consen 217 PGPFLVIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRR--DIMLPGRFDVCITSYEIAIKDK---------- 282 (971)
T ss_pred CCCeEEEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHH--HhhccCCCceEeehHHHHHhhH----------
Confidence 4899999999999999999999998 9999999999876532221 1222248999999999999874
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
+.|.++.|.++|+||||+|||.+|.+++.++.+.+.+|++|||||+||||.|||+||+||.|+.|+
T Consensus 283 --------------~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~ 348 (971)
T KOG0385|consen 283 --------------SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFN 348 (971)
T ss_pred --------------HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHH
Q 001153 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1137)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~ 737 (1137)
+...|..+|......++.+.+.+|+.+++||++||.|.+|... |||+.+.+++|.||+.|+++|..++.+-.....
T Consensus 349 ~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n-- 424 (971)
T KOG0385|consen 349 SAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDALN-- 424 (971)
T ss_pred CHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhhc--
Confidence 9999999998877777778899999999999999999999665 999999999999999999999998654221110
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHH----------HH
Q 001153 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE----------IL 807 (1137)
Q Consensus 738 l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~ee----------lL 807 (1137)
+ . +..+..++++.+|+||++||||+|+.+... +.+.+.++ +|
T Consensus 425 --------------~------~-----~~~~k~kL~NI~mQLRKccnHPYLF~g~eP---g~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 425 --------------G------E-----GKGEKTKLQNIMMQLRKCCNHPYLFDGAEP---GPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred --------------c------c-----ccchhhHHHHHHHHHHHhcCCccccCCCCC---CCCCCcchHHHhcCcceehH
Confidence 0 0 011357899999999999999999887322 23343333 77
Q ss_pred HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHHH-----HHHHHHhhhcCCCC---cCe------eE
Q 001153 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPL---LNI------HL 873 (1137)
Q Consensus 808 ~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l~-----~~~~~~~~f~~D~~---~~l------h~ 873 (1137)
++|+.+++.+| |+||||||++.|||||+++......-|-+..+ .|...++.|+.++. .++ .+
T Consensus 477 DkLL~~Lk~~G----hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 477 DKLLPKLKEQG----HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred HHHHHHHHhCC----CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 88888887777 99999999999999999988877776766554 66677788888773 122 45
Q ss_pred EecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhcccc
Q 001153 874 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1137)
Q Consensus 874 ~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~~~ 926 (1137)
+.||+ ||||++|.||+ |||||||+|+|.||||+|++||||+|++.+-+|.-.+
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld 616 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLD 616 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchh
Confidence 66666 89999999999 9999999999999999999999999999988876554
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.7e-75 Score=684.06 Aligned_cols=364 Identities=21% Similarity=0.300 Sum_probs=296.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCccccccc--------ccchhhhhcCCcEEEEehHHHhhhccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDT--------SIMDISELVGADIVLTTYDVLKEDLSH 569 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~--------~~~~~~~l~~~DVVITTYetL~~d~~~ 569 (1137)
.+|+|||||++|+.||++|+.+|+| .++|.+|||......... ............|+||||+.++..-
T Consensus 255 ~~paLIVCP~Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~-- 330 (923)
T KOG0387|consen 255 TKPALIVCPATIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG-- 330 (923)
T ss_pred cCceEEEccHHHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC--
Confidence 3899999999999999999999998 899999999865311000 0011123345669999999999753
Q ss_pred CCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 001153 570 DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 570 ~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1137)
..+..+.|++|||||||+|||++|+.+.++++|++.+|++||||||||+|.|||+||+
T Consensus 331 ----------------------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfD 388 (923)
T KOG0387|consen 331 ----------------------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFD 388 (923)
T ss_pred ----------------------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhh
Confidence 2588899999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCchhhhhhhhcCCCCCCCc------------chHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCH
Q 001153 650 FLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSP 717 (1137)
Q Consensus 650 FL~p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~ 717 (1137)
|+.|+.+|+...|.+.|..||..|.+ ...-.|+.+++||||||+|+||.. +.||.|.++|++|.||+
T Consensus 389 Fv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~ 467 (923)
T KOG0387|consen 389 FVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTK 467 (923)
T ss_pred hccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccH
Confidence 99999999999999999999998754 233478999999999999999987 67999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc
Q 001153 718 IEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ 797 (1137)
Q Consensus 718 ~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~ 797 (1137)
.|+.+|+++.+. .++ ..+.+ . ...+|..+..||++||||.|.........
T Consensus 468 ~QR~~Y~~fl~s--~~v----~~i~n----g--------------------~~~~l~Gi~iLrkICnHPdll~~~~~~~~ 517 (923)
T KOG0387|consen 468 LQRRLYQRFLNS--SEV----NKILN----G--------------------KRNCLSGIDILRKICNHPDLLDRRDEDEK 517 (923)
T ss_pred HHHHHHHHHhhh--HHH----HHHHc----C--------------------CccceechHHHHhhcCCcccccCcccccc
Confidence 999999998753 111 22111 1 12467788899999999999776421111
Q ss_pred CCC--------CCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhh-hhhHHHHHH-----HHHHHHHhhh
Q 001153 798 QSP--------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ-AVSLYKEAM-----AVVEEHSEDF 863 (1137)
Q Consensus 798 ~~~--------~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~-a~~~y~~~l-----~~~~~~~~~f 863 (1137)
.++ ...-+++..|+..+...| +++|+|+|...||+|||..+.. -...|.+.. ..|+..+++|
T Consensus 518 ~~~D~~g~~k~sGKm~vl~~ll~~W~kqg----~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 518 QGPDYEGDPKRSGKMKVLAKLLKDWKKQG----DRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cCCCcCCChhhcchHHHHHHHHHHHhhCC----CEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 110 112267888888888777 8999999999999999999884 344565544 4888999999
Q ss_pred cCCCCcCe--------eEEecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhh
Q 001153 864 RLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQ 922 (1137)
Q Consensus 864 ~~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~ 922 (1137)
+.|...++ ..+.||+ ||||..|+||. |||||||+|+|.||||+|.|||||+|...|=-|
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 98886444 4456666 89999999999 999999999999999999999999998776443
No 4
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=8.2e-76 Score=710.03 Aligned_cols=471 Identities=20% Similarity=0.274 Sum_probs=352.0
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCccccccccc---c-hhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI---M-DISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~---~-~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
.||+|||+|.|++.+|+.||..|+ .+++++|+|....+.-.+.. . .....-+++++||||+++.++.
T Consensus 420 ~gpflvvvplst~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk------ 490 (1373)
T KOG0384|consen 420 HGPFLVVVPLSTITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK------ 490 (1373)
T ss_pred cCCeEEEeehhhhHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH------
Confidence 589999999999999999999999 79999999986543211100 0 0022347999999999999875
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccC
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1137)
..|..++|..+++||||++||..|+++..+..+...||+++||||+||++.|||+|++||.|
T Consensus 491 ------------------~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 491 ------------------AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ------------------hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhH
Q 001153 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGY 733 (1137)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~ 733 (1137)
+.|.+...|...+ .......+..|+.+|+|+||||.|+||.+ .|||+.|.++.|+||+.|+++|+.++++....
T Consensus 553 ~kf~~~~~f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdvek--slp~k~E~IlrVels~lQk~yYk~ILtkN~~~ 626 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVEK--SLPPKEETILRVELSDLQKQYYKAILTKNFSA 626 (1373)
T ss_pred CCCCcHHHHHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhcc--CCCCCcceEEEeehhHHHHHHHHHHHHhhHHH
Confidence 9999999998877 23556778899999999999999999955 49999999999999999999999998875433
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCC--CCHHH------
Q 001153 734 AREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP--LSMDE------ 805 (1137)
Q Consensus 734 ~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~--~t~ee------ 805 (1137)
+. + | ..+ +...+|+.+|.||+|||||+|+.+......... ...++
T Consensus 627 Lt------------K---G---~~g---------~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 627 LT------------K---G---AKG---------STPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred Hh------------c---c---CCC---------CCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 21 1 1 001 124689999999999999999876543321111 11233
Q ss_pred -------HHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHHH-----HHHHHHhhhcCCC---CcC
Q 001153 806 -------ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDP---LLN 870 (1137)
Q Consensus 806 -------lL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l~-----~~~~~~~~f~~D~---~~~ 870 (1137)
+|++||.+++..| |+||||||++.|||||++++......|++..+ .|+..++.|+... |.+
T Consensus 680 ~sSGKlVLLDKLL~rLk~~G----HrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGG----HRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCC----ceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 3455555555544 99999999999999999999999999988775 5666677776533 444
Q ss_pred e------eEEecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhccccc------
Q 001153 871 I------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE------ 927 (1137)
Q Consensus 871 l------h~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~~~~------ 927 (1137)
| .+++||+ ||||++|+||| |||||||++.|+||||||++|+||.|.+.+|+|+|...
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRM 835 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhh
Confidence 4 6688888 99999999999 99999999999999999999999999999999998761
Q ss_pred ------cCCCCCCCCCCCCCCCccccCCCCCC-CCCCcCCCCCcCChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001153 928 ------ENSDFTDAEDPSGHLSDLSENGFNGD-RKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSY 1000 (1137)
Q Consensus 928 ------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~l~~~~~~l~~~yl~~~~~~~~~~~~~~~~~~ 1000 (1137)
+.++.=.+++|.+...+..++.+... ++ ..-+...++++..+..+.+-..... ... .+|.-+.
T Consensus 836 ~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene------~s~~~e~DIDeIL~rae~~~t~~~~---~~~-a~e~ls~ 905 (1373)
T KOG0384|consen 836 DTKGKTSKSNPFSKEELSAILKFGAYELFKEEENE------ESKFCEMDIDEILERAETRITEESD---FMK-ASELLSQ 905 (1373)
T ss_pred ccccccCCCCCCCHHHHHHHHHhchHHhhhccccc------cccccccCHHHHHhhcccccccccc---cch-hHHHHhh
Confidence 11122267778888888999998873 22 1234445566555555544433332 122 2233333
Q ss_pred HHHHHHhhh----cccccchHHHHHHHhhhcCccchHHHHHHHHHH
Q 001153 1001 MQVCNALDD----REKQYSAWWLEALHHAEGNKDFSAELIRKIEEA 1042 (1137)
Q Consensus 1001 ~~v~~~~~~----~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~ 1042 (1137)
-+|.++..+ .-....-=|-+++..-+..+...++-.+.+++.
T Consensus 906 fkvad~~~dd~~~~~~~~didwd~iipe~~r~~~~eeer~ke~ee~ 951 (1373)
T KOG0384|consen 906 FKVADIKADDPADLEAERDIDWDRIIPEEERERIEEEERLKELEEL 951 (1373)
T ss_pred ccccccccCChhhhhhhccCChhhhCCHHHHhcchhhhhHHHHHhh
Confidence 344333211 000011236677766665554555544444443
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.4e-74 Score=692.83 Aligned_cols=377 Identities=22% Similarity=0.316 Sum_probs=306.1
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..|.|||||++|..+|+.|+.+|+| .++|..|.|....+.. ......+++|+||||+++++|+.
T Consensus 1031 ~~PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~-----lR~q~~~~~iiVtSYDv~RnD~d--------- 1094 (1549)
T KOG0392|consen 1031 RLPSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRE-----LRDQYKNANIIVTSYDVVRNDVD--------- 1094 (1549)
T ss_pred cCCeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHH-----HHhhccccceEEeeHHHHHHHHH---------
Confidence 3589999999999999999999998 7999999998766532 45667788999999999999974
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
.|.++.|.++||||+|-|||..+++++++++|++.||++||||||||++.|||+||+||+|+++|
T Consensus 1095 ---------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLG 1159 (1549)
T KOG0392|consen 1095 ---------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLG 1159 (1549)
T ss_pred ---------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccC
Confidence 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCCC------------CcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHH
Q 001153 658 ISRWWIEVIRDPYENG------------DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1137)
Q Consensus 658 ~~~~F~~~~~~pi~~~------------~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~ 725 (1137)
+.+.|.++|..||... +..+++.||+.+-|||+||+|+||+.+ ||||..+.++|+|||.|+++|+.
T Consensus 1160 tEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~d 1237 (1549)
T KOG0392|consen 1160 TEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRD 1237 (1549)
T ss_pred cHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHH
Confidence 9999999999999652 125788999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccc----ccc----
Q 001153 726 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR----SLQ---- 797 (1137)
Q Consensus 726 l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~----~~~---- 797 (1137)
+.++...... +. ..+. .....+ ...++++.|..||+.|+||.|+-.... .+.
T Consensus 1238 f~~~~k~~~~----~~--------~d~~------~~S~gt--~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~ 1297 (1549)
T KOG0392|consen 1238 FVKKAKQCVS----SQ--------IDGG------EESLGT--DKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLA 1297 (1549)
T ss_pred HHHHhccccc----cc--------cccc------hhccCc--chHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHH
Confidence 8765221111 10 0010 001111 268999999999999999998654311 110
Q ss_pred CCCCC--------HHHHHHHHHHHHHHhh----------hhhcchHHHHHhHHHHHHHHHHhhhhhhh---HHHHHH---
Q 001153 798 QSPLS--------MDEILMVLIGKTKIEG----------EEALRKLVMALNGLAGIALIEKNLSQAVS---LYKEAM--- 853 (1137)
Q Consensus 798 ~~~~t--------~eelL~~Ll~~~~~e~----------eea~rkvLifsq~~a~L~iLe~~l~~a~~---~y~~~l--- 853 (1137)
....+ .-..|..|+..+-..- .-.+|++|||+|+..|||++++++-++.. .|-+..
T Consensus 1298 ~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSV 1377 (1549)
T KOG0392|consen 1298 HFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSV 1377 (1549)
T ss_pred HhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCC
Confidence 00001 1134566665543220 02789999999999999999999877632 133433
Q ss_pred --HHHHHHHhhhcCCCCcCe--------eEEecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCccc
Q 001153 854 --AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIE 912 (1137)
Q Consensus 854 --~~~~~~~~~f~~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tie 912 (1137)
+.|.+++++|+.||-..+ ..+.||+ |||||+|.||+ |||||||+|.|+||||||+||+|
T Consensus 1378 pp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1378 PPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred CcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 388999999999985222 4478888 99999999999 99999999999999999999999
Q ss_pred ccchhHhhhhccccc
Q 001153 913 TCDENARKCQRVSRE 927 (1137)
Q Consensus 913 e~i~~~~k~~~~~~~ 927 (1137)
|+||.+||=|+-.-+
T Consensus 1458 EKVMgLQkFKmnvAn 1472 (1549)
T KOG0392|consen 1458 EKVMGLQKFKMNVAN 1472 (1549)
T ss_pred HHHhhHHHHhhHHHH
Confidence 999999998875443
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-71 Score=646.31 Aligned_cols=375 Identities=21% Similarity=0.262 Sum_probs=294.8
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.||+|||||+|+++||.+||.+||| +|+|..|+|+..++...+..+.. .-..|||++|||..+....+ +
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~-~~~~ydVllTTY~la~~~kd--------D 516 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWCP--SLKVEPYYGSQDERRELRERIKK-NKDDYDVLLTTYNLAASSKD--------D 516 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhc-cCCCccEEEEEeecccCChH--------H
Confidence 4899999999999999999999998 99999999998765433322222 22389999999999875321 1
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
.+.|....|++||.||||++||..|.+++.+..++|.+|++|||||+||+|.||++||.|+.|..|.
T Consensus 517 -------------Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~ 583 (941)
T KOG0389|consen 517 -------------RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFD 583 (941)
T ss_pred -------------HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhh
Confidence 1578889999999999999999999999999999999999999999999999999999999999998
Q ss_pred ch-hhhhhhhcCCCC-CCC-------cchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 001153 658 IS-RWWIEVIRDPYE-NGD-------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 728 (1137)
Q Consensus 658 ~~-~~F~~~~~~pi~-~~~-------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e 728 (1137)
+. ..+...|...-. .++ .+.+.+.+.+++||+|||.|++|+++ ||||..+|.+|+|++.|+.+|+.+.+
T Consensus 584 ~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 584 SSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred ccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHH
Confidence 64 344444432211 121 24567888999999999999999887 99999999999999999999998766
Q ss_pred HHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccc-----c-------
Q 001153 729 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS-----L------- 796 (1137)
Q Consensus 729 ~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~-----~------- 796 (1137)
... ....+. +.+. .... -+.||+||+++|||-|...-... +
T Consensus 662 ~~~-----------~~~~~~------~~ns---------~~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e 714 (941)
T KOG0389|consen 662 LYD-----------VKLNEV------SKNS---------ELKS-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNE 714 (941)
T ss_pred HHh-----------hhcccc------cccc---------cccc-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCc
Confidence 421 000000 1110 0011 45899999999999985422110 0
Q ss_pred ---------------------------------cCCCCC--------HHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 001153 797 ---------------------------------QQSPLS--------MDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835 (1137)
Q Consensus 797 ---------------------------------~~~~~t--------~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L 835 (1137)
.+..+. .-..|..|+.+++.+| ++||+||||+.||
T Consensus 715 ~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G----~RVLiFSQFTqmL 790 (941)
T KOG0389|consen 715 PAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG----DRVLIFSQFTQML 790 (941)
T ss_pred hhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC----CEEEEeeHHHHHH
Confidence 000000 0126677888887777 9999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHH-----HHHHHHhhhcCCCCcCe--------eEEecCC----------cCCcchhhhhh-hh
Q 001153 836 ALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-EL 891 (1137)
Q Consensus 836 ~iLe~~l~~a~~~y~~~l~-----~~~~~~~~f~~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-r~ 891 (1137)
||||..+......|.+..+ .|+..+++|+.|...++ ..+.||+ ++||.+|.||. ||
T Consensus 791 DILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 791 DILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred HHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHH
Confidence 9999999888777777654 78899999999886443 2344444 69999999999 99
Q ss_pred hhcCCCCceEEEEcccCCcccccchhHhhhhccccccC
Q 001153 892 SQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREEN 929 (1137)
Q Consensus 892 ~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~~~~~~ 929 (1137)
||+||+|+|+||||||++||||.|..++|+|...+...
T Consensus 871 HRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~l 908 (941)
T KOG0389|consen 871 HRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADL 908 (941)
T ss_pred HhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999887644
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=6.5e-69 Score=674.07 Aligned_cols=365 Identities=20% Similarity=0.261 Sum_probs=292.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.+|+|||||+|++.||.+||.+|+| .+++++|+|....+..... ......++|||||||+++.++.
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~--~~~~~~~~dVvITSYe~l~~e~---------- 284 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQRE--ELLVAGKFDVCVTSFEMAIKEK---------- 284 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHH--HHhcccCCCcceecHHHHHHHH----------
Confidence 4799999999999999999999997 8999999998654321100 1112357999999999998864
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
..|..+.|++||+||||+|||..|+++++++.|++.+||+|||||++|++.|||+||+||.|+.|+
T Consensus 285 --------------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~ 350 (1033)
T PLN03142 285 --------------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFS 350 (1033)
T ss_pred --------------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCC
Confidence 357888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHH
Q 001153 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1137)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~ 737 (1137)
+...|...|..+...+....+..|+.+++|||+||+|++|... |||+.+.+++|.||+.|+++|+.+.......+
T Consensus 351 s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l--- 425 (1033)
T PLN03142 351 SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVV--- 425 (1033)
T ss_pred CHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH---
Confidence 9999999998765555667788999999999999999999665 99999999999999999999998876432211
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCC-------CCCHHHHHHHH
Q 001153 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS-------PLSMDEILMVL 810 (1137)
Q Consensus 738 l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~-------~~t~eelL~~L 810 (1137)
. . ......+++.+++||++|+||+|+.+........ ....-.+|+.|
T Consensus 426 -~--------~-----------------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 426 -N--------A-----------------GGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred -h--------c-----------------cccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 0 0 0113468999999999999999976443211000 01122456667
Q ss_pred HHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHH-----HHHHHHHHHhhhcCCCC---c-------------
Q 001153 811 IGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE-----AMAVVEEHSEDFRLDPL---L------------- 869 (1137)
Q Consensus 811 l~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~-----~l~~~~~~~~~f~~D~~---~------------- 869 (1137)
+.+++..+ ++||||||++.+|++|++.+......|.. ....+++.++.|+.+.. .
T Consensus 480 L~~Lk~~g----~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 480 LPKLKERD----SRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHhcC----CeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 76665544 89999999999999999988655443322 23477888888976432 1
Q ss_pred ----CeeEEecCCcCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhcccc
Q 001153 870 ----NIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1137)
Q Consensus 870 ----~lh~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~~~ 926 (1137)
...++|++ +|||+++.||+ |||||||+++|.||||+++|||||+|++.+.+|....
T Consensus 556 Lt~Ad~VIiyD~-dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld 616 (1033)
T PLN03142 556 LATADIVILYDS-DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALD 616 (1033)
T ss_pred hhhCCEEEEeCC-CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 11334444 59999999999 9999999999999999999999999999998887643
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-68 Score=633.43 Aligned_cols=233 Identities=25% Similarity=0.428 Sum_probs=200.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.||.|||||.|++-||+-||++||| +++++.|+|..+++...+. ....-..|.|.||||.++..++.
T Consensus 665 WGPHLIVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRq--gW~kPnaFHVCItSYklv~qd~~--------- 731 (1958)
T KOG0391|consen 665 WGPHLIVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQ--GWAKPNAFHVCITSYKLVFQDLT--------- 731 (1958)
T ss_pred CCCceEEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhh--cccCCCeeEEeehhhHHHHhHHH---------
Confidence 4899999999999999999999998 8999999999877543221 22333458899999999999863
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
.|.+..|.++||||||+|||.+|+.++++..+++.+|++|||||+||++.|||+|++||+|..|.
T Consensus 732 ---------------AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~ 796 (1958)
T KOG0391|consen 732 ---------------AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFA 796 (1958)
T ss_pred ---------------HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhh
Confidence 58889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCC---C----CcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 001153 658 ISRWWIEVIRDPYEN---G----DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1137)
Q Consensus 658 ~~~~F~~~~~~pi~~---~----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1137)
+...|+.+|.+|... + +...+.+||++++||+|||+|.||.++ ||.|.|+|++|.||..||.+|+.+..+.
T Consensus 797 shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~ 874 (1958)
T KOG0391|consen 797 SHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQP 874 (1958)
T ss_pred hhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhcc
Confidence 999999999998754 1 235678999999999999999999666 9999999999999999999999874321
Q ss_pred HhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCC
Q 001153 731 VGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQV 788 (1137)
Q Consensus 731 ~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L 788 (1137)
-. +. .+...+.++|++.||+||++||||.|
T Consensus 875 ~T---------Ke-------------------tLkSGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 875 GT---------KE-------------------TLKSGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred ch---------hh-------------------HhhcCchhHHHHHHHHHHHHcCCCCc
Confidence 10 00 01122468899999999999999987
No 9
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-66 Score=580.68 Aligned_cols=392 Identities=28% Similarity=0.371 Sum_probs=300.5
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 499 ~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.|||||||.-.+.||.+||.+|+. |.+++++|||.++.. ...++..||+|+|||.++.+.+..-. .|-+
T Consensus 232 a~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~-------nikel~~YDvVLTty~vvEs~yRk~~---~Gfr 300 (791)
T KOG1002|consen 232 APTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDK-------NIKELMNYDVVLTTYAVVESVYRKQD---YGFR 300 (791)
T ss_pred CCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccC-------CHHHhhcCcEEEEecHHHHHHHHhcc---cccc
Confidence 579999999999999999999997 899999999987653 67889999999999999998764311 0100
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCCc
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1137)
...-..+-+++|+.+.|.||||||||.||+..|.+++++..|.+.+||||||||+||++.|||+|++||+..||..
T Consensus 301 ----rKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsy 376 (791)
T KOG1002|consen 301 ----RKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSY 376 (791)
T ss_pred ----ccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchh
Confidence 0111223458999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred h-------------------------------hhhhhhhcCCCCCC-----CcchHHHHHHHHhhHhhcccccccccCCC
Q 001153 659 S-------------------------------RWWIEVIRDPYENG-----DVGAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1137)
Q Consensus 659 ~-------------------------------~~F~~~~~~pi~~~-----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1137)
+ -+|......||... +..+....+.+++.+|+||||-.-+++|.
T Consensus 377 yfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLg 456 (791)
T KOG1002|consen 377 YFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLG 456 (791)
T ss_pred hhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 3 24555556676652 22455677899999999999999999999
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 001153 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1137)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQi 782 (1137)
|||+...+..=.|+.+|..+|+.++.........++.. | .. -.++++|+..|+||||+
T Consensus 457 LPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyiee-----------G-----vv------lNNYAnIF~LitRmRQ~ 514 (791)
T KOG1002|consen 457 LPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEE-----------G-----VV------LNNYANIFTLITRMRQA 514 (791)
T ss_pred CCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhh-----------h-----hh------hhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999987543332222111 1 11 23478999999999999
Q ss_pred cCCCCCCCcccc----cccC------------------C------------------------------CC---------
Q 001153 783 CCHPQVGSSGLR----SLQQ------------------S------------------------------PL--------- 801 (1137)
Q Consensus 783 C~HP~L~~~~~~----~~~~------------------~------------------------------~~--------- 801 (1137)
..||+|+..... .-++ + ++
T Consensus 515 aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 515 ADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred ccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 999998542110 0000 0 00
Q ss_pred -----------------CHHH-----HHHHHHHHHHHh-hhhhcchHHHHHhHHHHHHHHHHhhhhhhhHH---HHH--H
Q 001153 802 -----------------SMDE-----ILMVLIGKTKIE-GEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KEA--M 853 (1137)
Q Consensus 802 -----------------t~ee-----lL~~Ll~~~~~e-~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y---~~~--l 853 (1137)
.|++ -++.|++++.-- -.+---|-++||||+.|||+|+-.+.+|.... .+. .
T Consensus 595 ek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~ 674 (791)
T KOG1002|consen 595 EKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSP 674 (791)
T ss_pred hhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCCh
Confidence 0110 112333322110 11111367899999999999999999986532 222 3
Q ss_pred HHHHHHHhhhcCCCCcCe--------eEEecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCccccc
Q 001153 854 AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETC 914 (1137)
Q Consensus 854 ~~~~~~~~~f~~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~ 914 (1137)
..+++.++.|..|+...+ .+-.||. ||||+++-||+ |+|||||.+||.|-|++-++||||+
T Consensus 675 ~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~k 754 (791)
T KOG1002|consen 675 AARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEK 754 (791)
T ss_pred HHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHH
Confidence 477788889999886444 4556665 89999999999 9999999999999999999999999
Q ss_pred chhHhhhhccccc
Q 001153 915 DENARKCQRVSRE 927 (1137)
Q Consensus 915 i~~~~k~~~~~~~ 927 (1137)
|.++||+|.---.
T Consensus 755 IieLQeKKa~mih 767 (791)
T KOG1002|consen 755 IIELQEKKANMIH 767 (791)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999765443
No 10
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.6e-66 Score=596.62 Aligned_cols=399 Identities=25% Similarity=0.358 Sum_probs=296.3
Q ss_pred cEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchh
Q 001153 500 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 579 (1137)
Q Consensus 500 ~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~ 579 (1137)
+||||||+||+.||..||++-.....|+|++|||..+. .+.+..+.+||||||||..+.+.-.. ...
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r------~i~~~~L~~YDvViTTY~lva~~~~~--e~~----- 451 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKR------EISAKELRKYDVVITTYNLVANKPDD--ELE----- 451 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccc------cCCHHHHhhcceEEEeeeccccCCch--hhh-----
Confidence 69999999999999999999988889999999998752 34788999999999999999882110 000
Q ss_pred hhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCCch
Q 001153 580 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSIS 659 (1137)
Q Consensus 580 ~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~ 659 (1137)
-..-.++|.++.|.||||||||.|||++|+.+.+++.|.+.+|||||||||||++-|+|+|++||+..||++.
T Consensus 452 -------~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 452 -------EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred -------cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 0112378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCcchHHHHHHHHhhHhhccccccccc---CCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHH
Q 001153 660 RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSD---ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1137)
Q Consensus 660 ~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~---eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~ 736 (1137)
..|++.+..+-. ...+++.-+.+++||||||..... ...||++..+++.++|+..|...|+-+.+........
T Consensus 525 ~~Wke~i~~~s~----~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq 600 (901)
T KOG4439|consen 525 KQWKENIDNMSK----GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ 600 (901)
T ss_pred HHHHHhccCccc----cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 999998865432 345678889999999999998633 2469999999999999999999999877654443333
Q ss_pred HHHHHHHHHhhccCCCCCC----------CCCccCcc--------cchhhHHHHHHHHHHHHHHcCCCCCCCcccccccC
Q 001153 737 VIQRLKDNILKRNVPGHAS----------SDALYNPI--------ITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 798 (1137)
Q Consensus 737 ~l~~~~~~~~~r~~~g~~~----------~~~~~~~~--------~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~ 798 (1137)
++.. -..++-.+.+. ..+....+ ........||..|+||||+||||.+...++.....
T Consensus 601 ~L~~----~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~ 676 (901)
T KOG4439|consen 601 FLLQ----REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF 676 (901)
T ss_pred HHHh----hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh
Confidence 3222 11111111110 11100000 01233566999999999999999775544332110
Q ss_pred ---CCC-C---------------------------------HHH---------HHHHHHHHHHHhhhhhcchHHHHHhHH
Q 001153 799 ---SPL-S---------------------------------MDE---------ILMVLIGKTKIEGEEALRKLVMALNGL 832 (1137)
Q Consensus 799 ---~~~-t---------------------------------~ee---------lL~~Ll~~~~~e~eea~rkvLifsq~~ 832 (1137)
+.+ + .++ -+...+..+...-...-.+++|-||++
T Consensus 677 ~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwt 756 (901)
T KOG4439|consen 677 QMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWT 756 (901)
T ss_pred hhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHH
Confidence 000 0 000 011112222222234457999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHH-----HHHHHHHHhhhcCCCC---------cCeeEEecCC----------cCCcchhhhh
Q 001153 833 AGIALIEKNLSQAVSLYKEA-----MAVVEEHSEDFRLDPL---------LNIHLHHNLT----------EILPMVANCA 888 (1137)
Q Consensus 833 a~L~iLe~~l~~a~~~y~~~-----l~~~~~~~~~f~~D~~---------~~lh~~~Nl~----------dwnp~~d~QA 888 (1137)
.+|++++..+.+....|... .+.+++.++.|+...- ..-.++.||. -|||+-+.||
T Consensus 757 svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQA 836 (901)
T KOG4439|consen 757 SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQA 836 (901)
T ss_pred HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHH
Confidence 99999999998887777543 3477777777764432 1113344444 6999999999
Q ss_pred h-hhhhcCCCCceEEEEcccCCcccccchhHhhhhcccc
Q 001153 889 T-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1137)
Q Consensus 889 ~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~~~ 926 (1137)
. |++|+||+|+|.|||++++||+|++|+.+|..|.-.-
T Consensus 837 cDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA 875 (901)
T KOG4439|consen 837 CDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLA 875 (901)
T ss_pred HHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999976443
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-67 Score=601.59 Aligned_cols=357 Identities=24% Similarity=0.307 Sum_probs=295.1
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch----hhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~----~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
.||+|||+|+|+++||.+||.+|+| .++++.|.|....+...+.... -...+.++||||||.++..+..
T Consensus 617 wGPFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek----- 689 (1185)
T KOG0388|consen 617 WGPFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK----- 689 (1185)
T ss_pred CCceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH-----
Confidence 5899999999999999999999998 9999999999776532211111 2345678999999999998752
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccC
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1137)
.|.++.|.++||||||.||+..|.+++.+..+++++|++||||||||+..|||+||+|++|
T Consensus 690 -------------------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMP 750 (1185)
T KOG0388|consen 690 -------------------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMP 750 (1185)
T ss_pred -------------------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhhcCCCCC-------CCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 001153 654 SPFSISRWWIEVIRDPYEN-------GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1137)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~-------~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1137)
..|.+...|.++|...|+. -+...+.+||.+|+||||||.|++|..+ |-.|+++.++|.||..|+.+|+.+
T Consensus 751 sLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 751 SLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred HhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHHH
Confidence 9999999999999887765 2456789999999999999999999877 999999999999999999999987
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcc-------------c
Q 001153 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG-------------L 793 (1137)
Q Consensus 727 ~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~-------------~ 793 (1137)
...+. ...+...+|+||++||||.|+... +
T Consensus 829 k~~iS-------------------------------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl 871 (1185)
T KOG0388|consen 829 KRSIS-------------------------------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNL 871 (1185)
T ss_pred HHHhh-------------------------------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCH
Confidence 65432 133456889999999999873211 0
Q ss_pred cc------------------------------------------cc----------------CCCC--------------
Q 001153 794 RS------------------------------------------LQ----------------QSPL-------------- 801 (1137)
Q Consensus 794 ~~------------------------------------------~~----------------~~~~-------------- 801 (1137)
.. +. .++.
T Consensus 872 ~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr 951 (1185)
T KOG0388|consen 872 GDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTR 951 (1185)
T ss_pred HHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHH
Confidence 00 00 0000
Q ss_pred -------------------------------------------------------------------CHHH---------
Q 001153 802 -------------------------------------------------------------------SMDE--------- 805 (1137)
Q Consensus 802 -------------------------------------------------------------------t~ee--------- 805 (1137)
.|+.
T Consensus 952 ~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~ 1031 (1185)
T KOG0388|consen 952 NLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLV 1031 (1185)
T ss_pred HhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhcccccee
Confidence 0000
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHhhhcC-CCCcCe------eE
Q 001153 806 ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRL-DPLLNI------HL 873 (1137)
Q Consensus 806 lL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l-----~~~~~~~~~f~~-D~~~~l------h~ 873 (1137)
+|+.|+.+++.+| |+||+|.|++.|+++||+++......|-+.. ..+.+.+.+++. |.|.+| ..
T Consensus 1032 ~LDeLL~kLkaeg----HRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEG----HRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred eHHHHHHHhhcCC----ceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 5688888898888 9999999999999999999988776665443 367778888876 333333 44
Q ss_pred EecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhc
Q 001153 874 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1137)
Q Consensus 874 ~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~ 923 (1137)
+.||+ ||||..|.||+ ||||.||+++|+||||+++||+||++++.+++|.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~ 1168 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKD 1168 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHH
Confidence 56665 89999999999 9999999999999999999999999999999864
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.6e-64 Score=602.60 Aligned_cols=365 Identities=22% Similarity=0.284 Sum_probs=298.2
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.||+|||||.|++.||..||.+|+| ++..++|.|....+.... ......+|+|++|||+.+.++-
T Consensus 444 ~GP~LvivPlstL~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~---~qir~gKFnVLlTtyEyiikdk---------- 508 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLT---KQQRHGKFNVLLTTYEYIIKDK---------- 508 (1157)
T ss_pred CCCeEEeccccccCCchhhcccccc--ceeeeeeeCCHHHHhhHH---HHHhcccceeeeeeHHHhcCCH----------
Confidence 5899999999999999999999998 999999999987654221 2222388999999999998853
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHH-HhccCeEEEEeccCCCCChhhhHhhhhhccCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~-~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1137)
..|.+|.|.++|+||+|++||..++++..+. ...+.+|++|||||+||++.|||+||+||-|..|
T Consensus 509 --------------~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IF 574 (1157)
T KOG0386|consen 509 --------------ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIF 574 (1157)
T ss_pred --------------HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchh
Confidence 5799999999999999999999999999998 6789999999999999999999999999999999
Q ss_pred CchhhhhhhhcCCCCCCCc----------chHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 001153 657 SISRWWIEVIRDPYENGDV----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1137)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~----------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1137)
.+-..|.++|..||...+. -.+.+||.+|+||++||.|++|..+ ||.|++.++.|.||..|+.+|..+
T Consensus 575 nS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m 652 (1157)
T KOG0386|consen 575 NSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQM 652 (1157)
T ss_pred hhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHH
Confidence 9999999999999976331 2467999999999999999999776 999999999999999999999986
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc--CCC----
Q 001153 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ--QSP---- 800 (1137)
Q Consensus 727 ~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~--~~~---- 800 (1137)
...- ....++ .-....+..+++.+|.||++||||+++...-.... ...
T Consensus 653 ~~~g----------------------~l~~d~----~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 653 QNKG----------------------QLLKDT----AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred HhCC----------------------CCCcCc----hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 4320 000000 00122245789999999999999999732211111 111
Q ss_pred --CCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHHH-----HHHHHHhhhcC-CCCcCe-
Q 001153 801 --LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL-DPLLNI- 871 (1137)
Q Consensus 801 --~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l~-----~~~~~~~~f~~-D~~~~l- 871 (1137)
....++|+.++.+++.-+ |+||.|+|++.+++|+|.+|...-..|.+..+ .+.+..+.|+. |...++
T Consensus 707 R~sGKfELLDRiLPKLkatg----HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATG----HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcC----cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 134578899999998877 99999999999999999999988888877654 45556667764 332222
Q ss_pred -------eEEecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhc
Q 001153 872 -------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1137)
Q Consensus 872 -------h~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~ 923 (1137)
..+.||- ||||..|.||+ |||||||+++|.|+|++|.+++||+|+..++-|.
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl 852 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKL 852 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhc
Confidence 2344443 89999999999 9999999999999999999999999999977654
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=5.2e-56 Score=535.38 Aligned_cols=367 Identities=17% Similarity=0.183 Sum_probs=282.2
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccc-ccccc-chhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSL-SDTSI-MDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~-~~~~~-~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
....|||||++|+.+|.+||.+|..+..+..+.++|..+... ..... ......-.+-|.|.||++++....
T Consensus 298 ~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~------- 370 (776)
T KOG0390|consen 298 INKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR------- 370 (776)
T ss_pred ccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH-------
Confidence 467899999999999999999999866788888888766400 00000 001112335689999999997653
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCC
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~ 655 (1137)
.+.....+++|+||||++||..|.+.+++.+|++.+|++|||||+||++.|+|++|+|.+|+.
T Consensus 371 -----------------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~ 433 (776)
T KOG0390|consen 371 -----------------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGF 433 (776)
T ss_pred -----------------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhh
Confidence 467778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhcCCCCCCCc-----------chHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHH
Q 001153 656 FSISRWWIEVIRDPYENGDV-----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 724 (1137)
Q Consensus 656 f~~~~~F~~~~~~pi~~~~~-----------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~ 724 (1137)
+++...|+..+..|+.+++. +.+..|+.+++.|++||+-+...+. ||++.++|+.|.+|+.|+.+|.
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHH
Confidence 99999999999999877432 2367799999999999999777666 9999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCC------ccccc---
Q 001153 725 SQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS------SGLRS--- 795 (1137)
Q Consensus 725 ~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~------~~~~~--- 795 (1137)
.+..... . . .+ ....|..++.|+++|+||.|.. +....
T Consensus 512 ~l~~~~~---~----~--------~~------------------~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~ 558 (776)
T KOG0390|consen 512 KLLDSMK---M----R--------TL------------------KGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNP 558 (776)
T ss_pred HHHHHHH---h----h--------hh------------------hcchhhHHHHHHHHhcCHHhhcccccccccccccCh
Confidence 8765310 0 0 00 1125788999999999999974 10000
Q ss_pred ---ccCC---------C-CCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHH---HH--HHHHHH
Q 001153 796 ---LQQS---------P-LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVE 857 (1137)
Q Consensus 796 ---~~~~---------~-~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y---~~--~l~~~~ 857 (1137)
+... . ...--+|..|+... .++.+.++++-+|.+..|+++++.+.....-+ .+ ....|+
T Consensus 559 ~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~---~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq 635 (776)
T KOG0390|consen 559 ALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI---REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQ 635 (776)
T ss_pred HhhhcccccccccccchhhhHHHHHHHHHHHH---hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHH
Confidence 0000 0 00111333344333 34445688888999999999998776653322 22 345888
Q ss_pred HHHhhhcCCCCc-Ce--------eEEecCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchh
Q 001153 858 EHSEDFRLDPLL-NI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDEN 917 (1137)
Q Consensus 858 ~~~~~f~~D~~~-~l--------h~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~ 917 (1137)
..++.|+..+.. ++ ..+.||. ||||++|.||+ ||||+||+|+|.||||++.|||||+|.+
T Consensus 636 ~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~q 715 (776)
T KOG0390|consen 636 KLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQ 715 (776)
T ss_pred HHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHH
Confidence 999999876554 22 4466666 89999999999 9999999999999999999999999999
Q ss_pred Hhhhhcccc
Q 001153 918 ARKCQRVSR 926 (1137)
Q Consensus 918 ~~k~~~~~~ 926 (1137)
.|-.|+...
T Consensus 716 rq~~K~~lS 724 (776)
T KOG0390|consen 716 RQTHKEGLS 724 (776)
T ss_pred HHHHhhhhh
Confidence 987766543
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=9.6e-53 Score=537.41 Aligned_cols=373 Identities=25% Similarity=0.327 Sum_probs=290.5
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCe-EEEEcCCCcc-cccccccchhhhhc------CCcEEEEehHHHhh---h
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLK-TCIYEGARNS-SLSDTSIMDISELV------GADIVLTTYDVLKE---D 566 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~-V~vy~G~~~~-~~~~~~~~~~~~l~------~~DVVITTYetL~~---d 566 (1137)
.+|+|||||.+++.||.+|+.+|.+ .++ +.+|+|.... .. .......+. .+++++|||+.+++ +
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~ 464 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDK---KREALRDLLKLHLVIIFDVVITTYELLRRFLVD 464 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCc--cccceeeeeCCcccccH---HHHHHHHHhhhcccceeeEEechHHHHHHhhhh
Confidence 4799999999999999999999998 788 9999998752 00 000222222 28999999999998 4
Q ss_pred cccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHh
Q 001153 567 LSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 567 ~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~s 646 (1137)
. ..+..+.|+++|+||||+|||..|..+++++.+++.+||+|||||++|++.|||+
T Consensus 465 ~------------------------~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~s 520 (866)
T COG0553 465 H------------------------GGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWS 520 (866)
T ss_pred H------------------------HHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHH
Confidence 3 3688999999999999999999999999999999999999999999999999999
Q ss_pred hhh-hccCCCCC-chhhhhhhhcCCCCCCCc--------chHHHHHHHHhhHhhcccccc--cccCCCCCCCeEEEEEec
Q 001153 647 LLR-FLKSSPFS-ISRWWIEVIRDPYENGDV--------GAMEFTHKFFKEIMCRSSKVH--VSDELQLPPQEECVSWLT 714 (1137)
Q Consensus 647 LL~-FL~p~~f~-~~~~F~~~~~~pi~~~~~--------~~~~~L~~lL~~~mLRRtK~d--V~~eL~LPpk~e~vv~v~ 714 (1137)
+++ |+.|+.++ +...|...|..|+..... ..+..|+.+++||++||+|.+ +..+ ||++.+.++.|.
T Consensus 521 l~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~ 598 (866)
T COG0553 521 LLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECE 598 (866)
T ss_pred HHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhc
Confidence 999 99999999 558899999988876432 344558899999999999999 6555 999999999999
Q ss_pred CCHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCc
Q 001153 715 FSPIEEHFYQSQHE---TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS 791 (1137)
Q Consensus 715 LS~~Qr~lY~~l~e---~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~ 791 (1137)
+++.|+.+|..... .....+...... . ... ..... ....+++.+++|||+|+||.++..
T Consensus 599 l~~~q~~~y~~~~~~~~~~~~~~~~~~~~-------~-------~~~--~~~~~--~~~~~l~~~~~lr~~~~~p~l~~~ 660 (866)
T COG0553 599 LSEEQRELYEALLEGAEKNQQLLEDLEKA-------D-------SDE--NRIGD--SELNILALLTRLRQICNHPALVDE 660 (866)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-------ccc--ccccc--hhhHHHHHHHHHHHhccCcccccc
Confidence 99999999999877 322222111100 0 000 00000 246799999999999999999776
Q ss_pred ccccccC---------------------CCCCHHHHHHHHH-HHHHHhhhhhcc--hHHHHHhHHHHHHHHHHhhhhhhh
Q 001153 792 GLRSLQQ---------------------SPLSMDEILMVLI-GKTKIEGEEALR--KLVMALNGLAGIALIEKNLSQAVS 847 (1137)
Q Consensus 792 ~~~~~~~---------------------~~~t~eelL~~Ll-~~~~~e~eea~r--kvLifsq~~a~L~iLe~~l~~a~~ 847 (1137)
....... ..+..-..+.+++ ...+.++ + ++++|+|++.++++|+..+.....
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~----~~~kvlifsq~t~~l~il~~~l~~~~~ 736 (866)
T COG0553 661 GLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEG----HYHKVLIFSQFTPVLDLLEDYLKALGI 736 (866)
T ss_pred ccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhc----ccccEEEEeCcHHHHHHHHHHHHhcCC
Confidence 5211110 0002234556666 5666655 6 999999999999999998877752
Q ss_pred H---HHHH--HHHHHHHHhhhcCCCCc--------CeeEEecCC----------cCCcchhhhhh-hhhhcCCCCceEEE
Q 001153 848 L---YKEA--MAVVEEHSEDFRLDPLL--------NIHLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSE 903 (1137)
Q Consensus 848 ~---y~~~--l~~~~~~~~~f~~D~~~--------~lh~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~ 903 (1137)
. +.+. ...+.+.++.|+.++-. ..+++.||. +|||+++.||+ |||||||+++|.||
T Consensus 737 ~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 737 KYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 2 2333 35778888889886321 114444554 79999999999 99999999999999
Q ss_pred EcccCCcccccchhHhhhhc
Q 001153 904 KAFKIHSIETCDENARKCQR 923 (1137)
Q Consensus 904 rl~~~~tiee~i~~~~k~~~ 923 (1137)
|+++++||||+|.+.+..|+
T Consensus 817 r~i~~~tiEe~i~~~~~~K~ 836 (866)
T COG0553 817 RLITRGTIEEKILELQEKKQ 836 (866)
T ss_pred EeecCCcHHHHHHHHHHHHH
Confidence 99999999999999999984
No 15
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6e-52 Score=503.68 Aligned_cols=370 Identities=30% Similarity=0.433 Sum_probs=296.8
Q ss_pred CCCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 497 ~~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+.+|||||.+++.||..|+.+...++.+.+++|+| +.. ....+.+||||||||+++..
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g-r~k--------d~~el~~~dVVltTy~il~~----------- 247 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG-RTK--------DKSELNSYDVVLTTYDILKN----------- 247 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc-ccc--------ccchhcCCceEEeeHHHhhc-----------
Confidence 4589999999999999999998888888999999999 221 56788999999999999985
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1137)
++|..+.|.|||+||||+++|.+++.++++..|++.+||+|||||+||+++|||+++.|+..+||
T Consensus 248 ---------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~ 312 (674)
T KOG1001|consen 248 ---------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPY 312 (674)
T ss_pred ---------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCc
Confidence 25888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhhcCCCCCCC-cchHHHHHHHHhhHhhcccccccc---cCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHh
Q 001153 657 SISRWWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVS---DELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 732 (1137)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~-~~~~~~L~~lL~~~mLRRtK~dV~---~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~ 732 (1137)
....+|...+..|+..+. ......++.+++.+|+||+|..-. ..+.|||++..++++.++..|+.+|..+...+..
T Consensus 313 ~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~ 392 (674)
T KOG1001|consen 313 CDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRN 392 (674)
T ss_pred hhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhh
Confidence 999999999999999887 678889999999999999998543 2357999999999999999999999999877655
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc---------------
Q 001153 733 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ--------------- 797 (1137)
Q Consensus 733 ~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~--------------- 797 (1137)
.....+.. | ....++..++..+++|||+|+||.++........
T Consensus 393 ~~~~~~~~-----------~-----------~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~ 450 (674)
T KOG1001|consen 393 QFSNYANE-----------G-----------TVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD 450 (674)
T ss_pred HHHHHhhh-----------c-----------hhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH
Confidence 44433221 0 0123467899999999999999998442211100
Q ss_pred -----CC------------CCCHHHHH------------------------HHHHHH-----------------------
Q 001153 798 -----QS------------PLSMDEIL------------------------MVLIGK----------------------- 813 (1137)
Q Consensus 798 -----~~------------~~t~eelL------------------------~~Ll~~----------------------- 813 (1137)
.. ...|.... .+++..
T Consensus 451 l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 451 LSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKI 530 (674)
T ss_pred HhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHH
Confidence 00 00000000 011110
Q ss_pred H-HHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHH-----HHHHHHHHHhhhcCCCCcCe--------eEEecCC-
Q 001153 814 T-KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE-----AMAVVEEHSEDFRLDPLLNI--------HLHHNLT- 878 (1137)
Q Consensus 814 ~-~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~-----~l~~~~~~~~~f~~D~~~~l--------h~~~Nl~- 878 (1137)
+ ..++.+. .++++|||++.++++++-.+......|.. .+..+......|..|+.+.+ .+++||.
T Consensus 531 l~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~ 609 (674)
T KOG1001|consen 531 LQAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTA 609 (674)
T ss_pred HhhccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhh
Confidence 0 1123333 49999999999999999887766544333 33466777778888887544 3455554
Q ss_pred ---------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhcc
Q 001153 879 ---------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1137)
Q Consensus 879 ---------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~ 924 (1137)
+|||.++.||+ |||||||+++|+|+|++.++|+||+++.+|+||+-
T Consensus 610 a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 610 ASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred hhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 89999999999 99999999999999999999999999999999864
No 16
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.1e-49 Score=465.39 Aligned_cols=385 Identities=18% Similarity=0.230 Sum_probs=273.1
Q ss_pred CCCcEEEEeCCchhHHHHHHHHhcCCC----CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCC
Q 001153 497 ATGATLIVCPAPILAQWDAEITRHTRP----GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1137)
Q Consensus 497 ~~~~tLIV~P~SLl~QW~~EI~k~~~~----g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1137)
.+++.|||||.+++.||.+||.+|.+. ..+.|+.+...++. ..+...-..+..+-.|.|+.|++++.-.....
T Consensus 727 g~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~--e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~- 803 (1567)
T KOG1015|consen 727 GFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRP--EERSYMLQRWQEDGGVMIIGYDMYRNLAQGRN- 803 (1567)
T ss_pred CCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccCh--HHHHHHHHHHHhcCCEEEEehHHHHHHhcccc-
Confidence 357999999999999999999999972 13444444433321 11112233445566899999999998543211
Q ss_pred CCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhcc
Q 001153 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1137)
Q Consensus 573 ~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1137)
.+.+. . .. .....|..-..++||+||||.|||..|.+++++.++++++||+|||||+||||.|+|.+++|+.
T Consensus 804 --vk~rk-~--ke---~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVK 875 (1567)
T KOG1015|consen 804 --VKSRK-L--KE---IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVK 875 (1567)
T ss_pred --hhhhH-H--HH---HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcc
Confidence 11111 0 00 1113466677899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhhhcCCCCCCCc------------chHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHH
Q 001153 653 SSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1137)
Q Consensus 653 p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr 720 (1137)
|+.+|+...|..+|.+||++|.. ....-|+.+|..++-|+--..+... ||||+++||.|.||+.|.
T Consensus 876 e~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~vrltelQ~ 953 (1567)
T KOG1015|consen 876 ENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAVRLTELQC 953 (1567)
T ss_pred cccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEEeccHHHH
Confidence 99999999999999999999753 2234678899999999888877666 999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCC----------
Q 001153 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS---------- 790 (1137)
Q Consensus 721 ~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~---------- 790 (1137)
.+|+.+++- . ...+ .+..++ +.-...+|+....|++|-+||....
T Consensus 954 ~LYq~yL~h-~----------------~~~G----~d~eg~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR 1008 (1567)
T KOG1015|consen 954 KLYQYYLDH-L----------------TGVG----NDSEGG----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKR 1008 (1567)
T ss_pred HHHHHHHhh-c----------------cccC----Cccccc----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcc
Confidence 999987541 0 0001 111111 1124578999999999999997411
Q ss_pred ---cc----cc------------------------------ccc----------------------CC--------C---
Q 001153 791 ---SG----LR------------------------------SLQ----------------------QS--------P--- 800 (1137)
Q Consensus 791 ---~~----~~------------------------------~~~----------------------~~--------~--- 800 (1137)
.. +. +.. .+ +
T Consensus 1009 ~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~ 1088 (1567)
T KOG1015|consen 1009 YFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVS 1088 (1567)
T ss_pred cccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchH
Confidence 00 00 000 00 0
Q ss_pred CCHH-------------------HHH-------------HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhH
Q 001153 801 LSMD-------------------EIL-------------MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL 848 (1137)
Q Consensus 801 ~t~e-------------------elL-------------~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~ 848 (1137)
+.|. +++ ..||-.+..-|++-+.++|||||.+..|++|+..|..+...
T Consensus 1089 l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~ 1168 (1567)
T KOG1015|consen 1089 LKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSRE 1168 (1567)
T ss_pred HHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhccc
Confidence 0000 000 11223444567788899999999999999999987654222
Q ss_pred ----------------------HHH-----HHHHHHHHHhhhcCCCC--cCe--------eEEecCC----------cCC
Q 001153 849 ----------------------YKE-----AMAVVEEHSEDFRLDPL--LNI--------HLHHNLT----------EIL 881 (1137)
Q Consensus 849 ----------------------y~~-----~l~~~~~~~~~f~~D~~--~~l--------h~~~Nl~----------dwn 881 (1137)
|-+ .-..++..++.|+--.- .+| .+++||. .||
T Consensus 1169 gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWN 1248 (1567)
T KOG1015|consen 1169 GKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWN 1248 (1567)
T ss_pred CccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccC
Confidence 111 12366677777753221 111 1233332 699
Q ss_pred cchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHh
Q 001153 882 PMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENAR 919 (1137)
Q Consensus 882 p~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~ 919 (1137)
|.-|.|++ |+||.||+|||.|||||..||+||+|...|
T Consensus 1249 PSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQ 1287 (1567)
T KOG1015|consen 1249 PSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQ 1287 (1567)
T ss_pred CccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHH
Confidence 99999999 999999999999999999999999998765
No 17
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.6e-46 Score=418.46 Aligned_cols=241 Identities=32% Similarity=0.522 Sum_probs=188.5
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 499 ~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
+++|||||++++.||..||.+|++++.+++++|.|..... .........++++||||+++.....
T Consensus 59 ~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~vvi~ty~~~~~~~~---------- 123 (299)
T PF00176_consen 59 KKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERR-----RLSKNQLPKYDVVITTYETLRKARK---------- 123 (299)
T ss_dssp S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHH-----HTTSSSCCCSSEEEEEHHHHH--TS----------
T ss_pred cceeEeeccchhhhhhhhhccccccccccccccccccccc-----cccccccccceeeeccccccccccc----------
Confidence 4699999999999999999999976689999999987111 1134456789999999999992110
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCCc
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1137)
+.....+..++|++||+||||.+||..|..++++..|.+.++|+|||||++|++.|||+++.||.|+.+++
T Consensus 124 ---------~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~ 194 (299)
T PF00176_consen 124 ---------KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD 194 (299)
T ss_dssp ---------THTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS
T ss_pred ---------cccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeecccccc
Confidence 00113577788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHH
Q 001153 659 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 738 (1137)
Q Consensus 659 ~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l 738 (1137)
...|.+.+..+.........++|+.+++++++||+++++. ..||++.+.++.++||+.|+++|+.+.........
T Consensus 195 ~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~--~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~--- 269 (299)
T PF00176_consen 195 RRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVE--KELPPKIEHVINVELSPEQRELYNELLKEARENLK--- 269 (299)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGC--TTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCT---
T ss_pred chhhhhhhhhhccccccccccccccccchhhhhhhccccc--ccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---
Confidence 9999988765533344567889999999999999999994 45999999999999999999999977654221110
Q ss_pred HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCC
Q 001153 739 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG 789 (1137)
Q Consensus 739 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~ 789 (1137)
.. . .........++..+++|||+||||.|+
T Consensus 270 ---------~~--------~----~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 270 ---------QS--------S----RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp ---------T---------T------TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ---------hh--------c----ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 00 0 112345678999999999999999874
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.6e-41 Score=389.69 Aligned_cols=393 Identities=18% Similarity=0.239 Sum_probs=265.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCC---------CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRP---------GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~---------g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~ 568 (1137)
++++|+|+|-+++.||..||..|.|+ ..+.|+++....+. +..+......+.....|+|+.|++++--.-
T Consensus 312 AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT-~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 312 AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKT-FDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhh-HHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 47999999999999999999999984 35667776655443 222223344555677899999999987543
Q ss_pred cCCCCCccch----h----------hhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEec
Q 001153 569 HDSDRHEGDR----R----------FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITG 634 (1137)
Q Consensus 569 ~~~~~~~~~r----~----------~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTG 634 (1137)
.......... + .-+.+.-|..+.+.|.+-..++||+||+|+|||..+.++.+++.|++++|++|||
T Consensus 391 k~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred hcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEec
Confidence 2110000000 0 0011112333456788889999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHhhhhhccCCCCCchhhhhhhhcCCCCCCCc------------chHHHHHHHHhhHhhcccccccccCCC
Q 001153 635 TPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1137)
Q Consensus 635 TPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1137)
-|+||+|-|.|.+++|++|.++|++..|...|.+||..|.- .....|+.++..|+-||+..-+.. .
T Consensus 471 YPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~--~ 548 (1387)
T KOG1016|consen 471 YPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK--I 548 (1387)
T ss_pred cccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh--h
Confidence 99999999999999999999999999999999999998642 123568899999999999987744 4
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 001153 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1137)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQi 782 (1137)
||.+.|.|+.|.+|..||++|+.+.-..+. ++... .+...+| |....-.-+|
T Consensus 549 LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r-----------~~~~~-------~~~~~NP----------LkAF~vCcKI 600 (1387)
T KOG1016|consen 549 LPEKKEYVILVRKSQIQRQLYRNFMLDAKR-----------EIAAN-------NDAVFNP----------LKAFSVCCKI 600 (1387)
T ss_pred cccccceEEEEeHHHHHHHHHHHHHHHHHH-----------hhccc-------cccccCh----------HHHHHHHHHh
Confidence 999999999999999999999987432111 11101 1111122 2222223334
Q ss_pred cCCCCCCC---------------------ccccc-----------------------cc--CC----------------C
Q 001153 783 CCHPQVGS---------------------SGLRS-----------------------LQ--QS----------------P 800 (1137)
Q Consensus 783 C~HP~L~~---------------------~~~~~-----------------------~~--~~----------------~ 800 (1137)
-|||.+.- .+... .+ +. .
T Consensus 601 WNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~ 680 (1387)
T KOG1016|consen 601 WNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEV 680 (1387)
T ss_pred cCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccc
Confidence 45665310 00000 00 00 0
Q ss_pred CCHHHHHHHHHHHHH-----------------HhhhhhcchHHHHHhHHHHHHHHHHhhhhh------------hhH---
Q 001153 801 LSMDEILMVLIGKTK-----------------IEGEEALRKLVMALNGLAGIALIEKNLSQA------------VSL--- 848 (1137)
Q Consensus 801 ~t~eelL~~Ll~~~~-----------------~e~eea~rkvLifsq~~a~L~iLe~~l~~a------------~~~--- 848 (1137)
.+..+.-.++..+.. .+....+.++|+|||-+..|++|+..+.+. .-.
T Consensus 681 ~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~ 760 (1387)
T KOG1016|consen 681 EKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEK 760 (1387)
T ss_pred cchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhh
Confidence 011112222333221 122234568999999999999999855432 111
Q ss_pred ---HHHHH-----HHHHHHHhhhcCCCCcC-e--------eEEecCC----------cCCcchhhhhh-hhhhcCCCCce
Q 001153 849 ---YKEAM-----AVVEEHSEDFRLDPLLN-I--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPG 900 (1137)
Q Consensus 849 ---y~~~l-----~~~~~~~~~f~~D~~~~-l--------h~~~Nl~----------dwnp~~d~QA~-r~~riGQ~~~v 900 (1137)
|-+.. ..++..+++|+..+-.. + ..+.||. -|||--|.||. |++|-||+|+.
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred ccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 21111 14566666776554321 1 2234443 69999999999 99999999999
Q ss_pred EEEEcccCCcccccchhHhhh
Q 001153 901 CSEKAFKIHSIETCDENARKC 921 (1137)
Q Consensus 901 ~v~rl~~~~tiee~i~~~~k~ 921 (1137)
.||||+.-.++|-+|.+.|=.
T Consensus 841 fvYRlVmD~~lEkkIydRQIs 861 (1387)
T KOG1016|consen 841 FVYRLVMDNSLEKKIYDRQIS 861 (1387)
T ss_pred eEEeehhhhhhHHHHHHHHHh
Confidence 999999999999999877633
No 19
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-39 Score=364.44 Aligned_cols=350 Identities=16% Similarity=0.161 Sum_probs=236.9
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh-cCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.|.|||||+|+...|.+++.+|+|. -..+.+..+.... ..++ ...-|+|+||+.+....
T Consensus 242 wplliVcPAsvrftWa~al~r~lps-~~pi~vv~~~~D~---------~~~~~t~~~v~ivSye~ls~l~---------- 301 (689)
T KOG1000|consen 242 WPLLIVCPASVRFTWAKALNRFLPS-IHPIFVVDKSSDP---------LPDVCTSNTVAIVSYEQLSLLH---------- 301 (689)
T ss_pred CcEEEEecHHHhHHHHHHHHHhccc-ccceEEEecccCC---------ccccccCCeEEEEEHHHHHHHH----------
Confidence 5899999999999999999999983 3445555554332 1222 23459999999998753
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhhccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L--~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~ 655 (1137)
..|..-.|..||+||.|++|+..++..+++..+ .++|.++|||||-..++.|||.++..+++..
T Consensus 302 --------------~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tl 367 (689)
T KOG1000|consen 302 --------------DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTL 367 (689)
T ss_pred --------------HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccc
Confidence 357777799999999999999999999999887 6899999999999999999999999999999
Q ss_pred CCchhhhhhhhcCCCC------CCCcchHHHHHHHHh-hHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 001153 656 FSISRWWIEVIRDPYE------NGDVGAMEFTHKFFK-EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 728 (1137)
Q Consensus 656 f~~~~~F~~~~~~pi~------~~~~~~~~~L~~lL~-~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e 728 (1137)
|.++..|...|++--. ...-.++++|+.+|. .+|+||+|.+|+.+ ||||+.+++++ ....+-..-+++..
T Consensus 368 fp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~~-~~gr~da~~~~lv~ 444 (689)
T KOG1000|consen 368 FPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVYV-SGGRIDARMDDLVK 444 (689)
T ss_pred cccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEEE-cCCccchHHHHHHH
Confidence 9999999888875322 122346677777665 57999999999887 99996666554 33333333333322
Q ss_pred HHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHH
Q 001153 729 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILM 808 (1137)
Q Consensus 729 ~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~ 808 (1137)
...... ..+.. . .+-...++.-++. +.....-+.+
T Consensus 445 ~a~~~t-------~~~~~-------------------e---~~~~~l~l~y~~t----------------giaK~~av~e 479 (689)
T KOG1000|consen 445 AAADYT-------KVNSM-------------------E---RKHESLLLFYSLT----------------GIAKAAAVCE 479 (689)
T ss_pred Hhhhcc-------hhhhh-------------------h---hhhHHHHHHHHHh----------------cccccHHHHH
Confidence 211100 00000 0 0001111111111 0001111112
Q ss_pred HHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHH-----HHHHHHHHhhhcCCCCcCe--------eEEe
Q 001153 809 VLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA-----MAVVEEHSEDFRLDPLLNI--------HLHH 875 (1137)
Q Consensus 809 ~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~-----l~~~~~~~~~f~~D~~~~l--------h~~~ 875 (1137)
-++.+-. -+++..+|+|+|..-..+|+-|+.++.+...-.-+. -..++..+..|+.+.--.+ .++.
T Consensus 480 yi~~~~~-l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGL 558 (689)
T KOG1000|consen 480 YILENYF-LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGL 558 (689)
T ss_pred HHHhCcc-cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccce
Confidence 1211100 034445899999999999999999887653322111 1256677788888775332 1122
Q ss_pred cCC----------cCCcchhhhhh-hhhhcCCCCceEEEEcccCCccccc--chhHhhhhccccccCCC
Q 001153 876 NLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETC--DENARKCQRVSREENSD 931 (1137)
Q Consensus 876 Nl~----------dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~--i~~~~k~~~~~~~~~~~ 931 (1137)
.+. .|||.+-.||. |+|||||+-.|.||=|+.+||++|- -+-.+|=+.+++.+++.
T Consensus 559 t~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s 627 (689)
T KOG1000|consen 559 TLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSS 627 (689)
T ss_pred eeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCc
Confidence 222 69999999999 9999999999999999999999995 34445555566665543
No 20
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.4e-38 Score=397.61 Aligned_cols=342 Identities=14% Similarity=0.157 Sum_probs=228.7
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.+++|||||++|+.||..|+.+++ ++.+.+|.+..-..... .....+..++++|+||++++++...
T Consensus 199 ~~rvLIVvP~sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~~---~~~~pf~~~~~vI~S~~~l~~~~~~-------- 264 (956)
T PRK04914 199 AERVLILVPETLQHQWLVEMLRRF---NLRFSLFDEERYAEAQH---DADNPFETEQLVICSLDFLRRNKQR-------- 264 (956)
T ss_pred CCcEEEEcCHHHHHHHHHHHHHHh---CCCeEEEcCcchhhhcc---cccCccccCcEEEEEHHHhhhCHHH--------
Confidence 469999999999999999998887 57777887654221100 0113345689999999999974210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh---hHHHHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhhcc
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~---~S~~~kal~~L--~a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1137)
...+....|++||+||||++++. .|+.++.+..| ++.++++|||||+||++.|+|++|+||+
T Consensus 265 -------------~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLd 331 (956)
T PRK04914 265 -------------LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLD 331 (956)
T ss_pred -------------HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhC
Confidence 02366779999999999999953 46778888888 5789999999999999999999999999
Q ss_pred CCCCCchhhhhhhhcC--CC-------CCCC---cchHHHH-------------------------------HHH-----
Q 001153 653 SSPFSISRWWIEVIRD--PY-------ENGD---VGAMEFT-------------------------------HKF----- 684 (1137)
Q Consensus 653 p~~f~~~~~F~~~~~~--pi-------~~~~---~~~~~~L-------------------------------~~l----- 684 (1137)
|+.|+++..|.+.... |+ ..+. ....+.| +.+
T Consensus 332 P~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg 411 (956)
T PRK04914 332 PDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHG 411 (956)
T ss_pred CCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcC
Confidence 9999999999754321 11 0111 1111111 111
Q ss_pred HhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCccc
Q 001153 685 FKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1137)
Q Consensus 685 L~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~ 764 (1137)
..++|+|+++++|.. +|++..+.+.+++.+..+..+.... . ...... +
T Consensus 412 ~~rvm~RntR~~v~~---fp~R~~~~~~l~~~~~y~~~~~~~~---~-------~~~~~~-------------------l 459 (956)
T PRK04914 412 TGRVLFRNTRAAVKG---FPKRELHPIPLPLPEQYQTAIKVSL---E-------ARARDM-------------------L 459 (956)
T ss_pred cceEEEeccHHhhcC---CCcCceeEeecCCCHHHHHHHHHhH---H-------HHHHhh-------------------c
Confidence 126899999999853 8999999999999775444332100 0 000000 0
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhh
Q 001153 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ 844 (1137)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~ 844 (1137)
.. ..++.. +... ... . ..-..-+.|..++... ...|+|||+++..+.+.|.+.+..
T Consensus 460 ~p---e~~~~~---~~~~--------~~~--~--~~d~Ki~~L~~~L~~~------~~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 460 YP---EQIYQE---FEDN--------ATW--W--NFDPRVEWLIDFLKSH------RSEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred CH---HHHHHH---Hhhh--------hhc--c--ccCHHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHHHHhh
Confidence 00 011110 0000 000 0 0001123333333321 137999999999999999998843
Q ss_pred h----hhHHHH--HHHHHHHHHhhhcCCC--C---------------cCe--eEEecCCcCCcchhhhhh-hhhhcCCCC
Q 001153 845 A----VSLYKE--AMAVVEEHSEDFRLDP--L---------------LNI--HLHHNLTEILPMVANCAT-ELSQNEQHF 898 (1137)
Q Consensus 845 a----~~~y~~--~l~~~~~~~~~f~~D~--~---------------~~l--h~~~Nl~dwnp~~d~QA~-r~~riGQ~~ 898 (1137)
. ...|.+ ....+++.++.|+.+. . +.. .++|++. |||+...|++ |+|||||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCc
Confidence 2 222333 3446777777887642 2 211 4456665 9999999999 999999999
Q ss_pred ceEEEEcccCCcccccchhHhhhhc
Q 001153 899 PGCSEKAFKIHSIETCDENARKCQR 923 (1137)
Q Consensus 899 ~v~v~rl~~~~tiee~i~~~~k~~~ 923 (1137)
+|.||.++.++|++|.+.+..+++.
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhc
Confidence 9999999999999999999988854
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=390.25 Aligned_cols=314 Identities=20% Similarity=0.335 Sum_probs=248.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-----------------cchhhhhcCCcEEEEeh
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-----------------IMDISELVGADIVLTTY 560 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~-----------------~~~~~~l~~~DVVITTY 560 (1137)
.+|.||++|.+.+.+|..|+..|++ .+.+..|+|..+.+...+. ........++.+.+++|
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~ 422 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSY 422 (696)
T ss_pred CCCceeeccCccccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCch
Confidence 4799999999999999999999998 8999999998764321100 00112345677888888
Q ss_pred HHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCC
Q 001153 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 640 (1137)
Q Consensus 561 etL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~ 640 (1137)
++...+. +.+..+.|..+|+||+|++||..|..++.+...+..+++++||||.||+
T Consensus 423 ~~~~~~~------------------------~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 423 ETIEIDQ------------------------SILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred hhcccCH------------------------HHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhh
Confidence 8877653 5799999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhhccCCCCCchhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHH
Q 001153 641 LDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1137)
Q Consensus 641 l~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr 720 (1137)
+.+|+++|+||.++.|.+..+|.+.|.+- ...+.++.|+.++.|.|+||.|.||.+. +|+|++.++.+.|++.|+
T Consensus 479 ~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~ 553 (696)
T KOG0383|consen 479 LEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQK 553 (696)
T ss_pred hHHhhhcccccCcccccchhhhhhhcchh---hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHH
Confidence 99999999999999999999999887643 3446788899999999999999999876 999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCC-
Q 001153 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS- 799 (1137)
Q Consensus 721 ~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~- 799 (1137)
++|+.++.+...-.+. ......+++.+|.||+.|+||++... ...+...
T Consensus 554 ~~yk~~~t~n~~~l~~-----------------------------~~~~~s~~n~~mel~K~~~hpy~~~~-~e~~~~~~ 603 (696)
T KOG0383|consen 554 KYYKKILTRNWQGLLA-----------------------------GVHQYSLLNIVMELRKQCNHPYLSPL-EEPLEENG 603 (696)
T ss_pred HHHHHHHcCChHHHhh-----------------------------cchhHHHHHHHHHHHHhhcCcccCcc-ccccccch
Confidence 9999876542221110 01135688999999999999999766 2222111
Q ss_pred ---------CCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHHH-----HHHHHHhhhcC
Q 001153 800 ---------PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL 865 (1137)
Q Consensus 800 ---------~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l~-----~~~~~~~~f~~ 865 (1137)
.+.+-.+|..|+.+++.+| |+|++|+|++.||||||+.+..+. .|.+..+ .+++.++.|+.
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~g----hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~ 678 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSG----HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNA 678 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCC
Confidence 1123345666666666655 999999999999999999999888 8887765 66677777773
Q ss_pred -CCCcCeeEEecC
Q 001153 866 -DPLLNIHLHHNL 877 (1137)
Q Consensus 866 -D~~~~lh~~~Nl 877 (1137)
+.-+++.++-|.
T Consensus 679 ~~~~~~cfllstr 691 (696)
T KOG0383|consen 679 PGSNQFCFLLSTR 691 (696)
T ss_pred CCccceEEEeecc
Confidence 444566655544
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=4.6e-23 Score=252.55 Aligned_cols=298 Identities=15% Similarity=0.173 Sum_probs=177.3
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+++|||||.+ ++.||.+||.+|+.-....+..|.|..+.. .....+|+||||+++.+....... .
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~----------~~~~~~VvVtTYq~l~~~~~r~~~----~ 364 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER----------FHGEAGVVVSTYSMVAHTGKRSYE----S 364 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc----------cccCCcEEEEEHHHhhcccccchh----h
Confidence 5799999987 489999999999753356677888864431 123578999999999864321000 0
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhc-cCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL-KSSPF 656 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL-~p~~f 656 (1137)
. .....|....|.+||+||+|++.+ ....+.+..+++.+||+|||||++++ +.+..+.|+ +|..|
T Consensus 365 ~----------~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vy 430 (732)
T TIGR00603 365 E----------KVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY 430 (732)
T ss_pred h----------HHHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeee
Confidence 0 001235556899999999999964 33445677789999999999999875 444445544 33222
Q ss_pred CchhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHH
Q 001153 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1137)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~ 736 (1137)
. ..|.+... .--|.+.....++|+|++.+..-|.....
T Consensus 431 e--~~~~eLi~--------------------------------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------- 468 (732)
T TIGR00603 431 E--ANWMELQK--------------------------------KGFIANVQCAEVWCPMTPEFYREYLRENS-------- 468 (732)
T ss_pred e--cCHHHHHh--------------------------------CCccccceEEEEEecCCHHHHHHHHHhcc--------
Confidence 1 11211111 11155666677999999875444421000
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHH
Q 001153 737 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 816 (1137)
Q Consensus 737 ~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~~~~~ 816 (1137)
. ....+ +..+|. .-+.+..|+..-.
T Consensus 469 -----------------------------~--~k~~l--------~~~np~---------------K~~~~~~Li~~he- 493 (732)
T TIGR00603 469 -----------------------------R--KRMLL--------YVMNPN---------------KFRACQFLIRFHE- 493 (732)
T ss_pred -----------------------------h--hhhHH--------hhhChH---------------HHHHHHHHHHHHh-
Confidence 0 00000 111221 1133444443221
Q ss_pred hhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhcCCCC-cCe---------------eEEecCC--
Q 001153 817 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-LNI---------------HLHHNLT-- 878 (1137)
Q Consensus 817 e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l~~~~~~~~~f~~D~~-~~l---------------h~~~Nl~-- 878 (1137)
...+++|||++.+..+..+...+.............|+...++|+.... ..| .+..++.
T Consensus 494 ---~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 494 ---QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 570 (732)
T ss_pred ---hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC
Confidence 2448999999999999888887764433333344577888888875422 212 2222222
Q ss_pred cCCcchhhhhh-hhhhcCCCC-----ceEEEEcccCCcccccchhHhhhhcccc
Q 001153 879 EILPMVANCAT-ELSQNEQHF-----PGCSEKAFKIHSIETCDENARKCQRVSR 926 (1137)
Q Consensus 879 dwnp~~d~QA~-r~~riGQ~~-----~v~v~rl~~~~tiee~i~~~~k~~~~~~ 926 (1137)
.-++....|.. |+.|.|..+ +...|.|++++|.|+.. -+|||+-.-
T Consensus 571 ~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~--s~~Rq~fl~ 622 (732)
T TIGR00603 571 YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY--STKRQRFLV 622 (732)
T ss_pred CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH--HHHHHHHHH
Confidence 12555555555 555555433 36789999999999875 455555443
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.78 E-value=5e-18 Score=216.08 Aligned_cols=367 Identities=11% Similarity=0.029 Sum_probs=193.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+++|||||. .++.||..++.+++.....++.+++|...... ......+++|+++|++++..++..
T Consensus 59 ~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~------r~~~~~~~~iiv~T~~~l~~~l~~-------- 124 (773)
T PRK13766 59 GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEK------RAELWEKAKVIVATPQVIENDLIA-------- 124 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHH------HHHHHhCCCEEEECHHHHHHHHHc--------
Confidence 689999998 68899999999987533458888888643210 123345789999999999887521
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhhccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1137)
..+..-.|..||+||||++.+..+..+-+-... +..+.++|||||.++ ...+..++.-|...
T Consensus 125 --------------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~ 189 (773)
T PRK13766 125 --------------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIE 189 (773)
T ss_pred --------------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCce
Confidence 112334689999999999987654433222222 345699999999876 56666666665543
Q ss_pred CCCchhhhhhh----hcCCC----CCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 001153 655 PFSISRWWIEV----IRDPY----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1137)
Q Consensus 655 ~f~~~~~F~~~----~~~pi----~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1137)
.......|... +..+- .-.-+..+..++..+..++-++.+...... .+++....+..-.+...++.++..+
T Consensus 190 ~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l 268 (773)
T PRK13766 190 HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG-VIVSISPDVSKKELLGLQKKLQQEI 268 (773)
T ss_pred EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCcCHHHHHHHHHHHHHHh
Confidence 32222112111 11100 001234566788888888887776543211 1223322222223333333333332
Q ss_pred HHHHHh--HHHHHH---HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCc----------
Q 001153 727 HETCVG--YAREVI---QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS---------- 791 (1137)
Q Consensus 727 ~e~~~~--~~~~~l---~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~---------- 791 (1137)
...... .....+ ..+..... .+.......+...+.+|+..+.++.....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 269 ANDDSEGYEAISILAEAMKLRHAVE----------------LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHH----------------HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 110000 000000 00000000 00000011222223333322221110000
Q ss_pred -----ccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhH---HHH----------HH
Q 001153 792 -----GLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKE----------AM 853 (1137)
Q Consensus 792 -----~~~~~~~~~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~---y~~----------~l 853 (1137)
..... ......-+.|..++.....+ ....++|||+++..+.+.|.+.+...... +.+ ..
T Consensus 333 ~~~~~~~~~~-~~~~pK~~~L~~il~~~~~~--~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 333 RKAVRKAKEL-DIEHPKLEKLREIVKEQLGK--NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHhc-ccCChHHHHHHHHHHHHHhc--CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00000 00111224444455443321 24479999999999999999888443211 111 11
Q ss_pred HHHHHHHhhhcCCCC-----------------cCeeEEecCCcCCcchhhhhhhhhhcCCCCceEEEEcccCCcccccch
Q 001153 854 AVVEEHSEDFRLDPL-----------------LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1137)
Q Consensus 854 ~~~~~~~~~f~~D~~-----------------~~lh~~~Nl~dwnp~~d~QA~r~~riGQ~~~v~v~rl~~~~tiee~i~ 916 (1137)
..+.+..++|+.+.. ....++|+. +|++..-.| |++|+|+..++.+|.|++++|.||.+.
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~-~~s~~r~iQ--R~GR~gR~~~~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP-VPSEIRSIQ--RKGRTGRQEEGRVVVLIAKGTRDEAYY 486 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC-CCCHHHHHH--HhcccCcCCCCEEEEEEeCCChHHHHH
Confidence 233445556654432 233556665 488876555 888888888899999999999999754
Q ss_pred h
Q 001153 917 N 917 (1137)
Q Consensus 917 ~ 917 (1137)
.
T Consensus 487 ~ 487 (773)
T PRK13766 487 W 487 (773)
T ss_pred H
Confidence 3
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=3.5e-12 Score=152.34 Aligned_cols=298 Identities=16% Similarity=0.085 Sum_probs=172.9
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.+|||||.. |+.||.+.+.+++..+ -.+..|.|..+.. ...+|+++||+++.+....
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~------------~~~~i~vat~qtl~~~~~l--------- 139 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKEL------------EPAKVTVATVQTLARRQLL--------- 139 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceecc------------CCCcEEEEEhHHHhhhhhh---------
Confidence 499999986 7789999999988521 2455666654421 1157999999999985200
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCe-EEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKH-RWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~-RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
..+..-.|+.||+||+|++.....+ ..+..+.+.+ +++|||||....-..+.-++.++.
T Consensus 140 -------------~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g----- 199 (442)
T COG1061 140 -------------DEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIG----- 199 (442)
T ss_pred -------------hhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcC-----
Confidence 1233337999999999999765433 2334445555 999999998544333333333332
Q ss_pred chhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHH
Q 001153 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1137)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~ 737 (1137)
+........+..++--|.|.....+++.++..+...|...........+.
T Consensus 200 -----------------------------~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~- 249 (442)
T COG1061 200 -----------------------------PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA- 249 (442)
T ss_pred -----------------------------CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh-
Confidence 22222222222222338888999999999999999998754332111000
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHh
Q 001153 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 817 (1137)
Q Consensus 738 l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~~~~~e 817 (1137)
+ .. ....-..+.+..+ .. .....+..++....
T Consensus 250 ----------~--------------------~~--~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~-- 281 (442)
T COG1061 250 ----------R--------------------GT--LRAENEARRIAIA-------------SE-RKIAAVRGLLLKHA-- 281 (442)
T ss_pred ----------h--------------------hh--hhHHHHHHHHhhc-------------cH-HHHHHHHHHHHHhc--
Confidence 0 00 0000001111111 00 00111222222111
Q ss_pred hhhhcchHHHHHhHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHhhhcCCCCcCeeE------EecCC---------
Q 001153 818 GEEALRKLVMALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDFRLDPLLNIHL------HHNLT--------- 878 (1137)
Q Consensus 818 ~eea~rkvLifsq~~a~L~iLe~~l~~a----~~~y~~~l~~~~~~~~~f~~D~~~~lh~------~~Nl~--------- 878 (1137)
...++++|.......+.|...+... ..........+++..+.|+...+..|.. +.+.-
T Consensus 282 ---~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 ---RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred ---CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 2368899999999988888887665 4444445557777788887755433321 11111
Q ss_pred -cCCcchhhhhh-hhhh-cCCCCc--eEEEEcccCCcccccchhHhh
Q 001153 879 -EILPMVANCAT-ELSQ-NEQHFP--GCSEKAFKIHSIETCDENARK 920 (1137)
Q Consensus 879 -dwnp~~d~QA~-r~~r-iGQ~~~--v~v~rl~~~~tiee~i~~~~k 920 (1137)
.=.+..-.|.. |..| ...+.. +..|-++...+.++.+.....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 23345667777 9999 555554 667788888888877644433
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.34 E-value=6.1e-11 Score=144.14 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=69.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeE-EEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V-~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+++||+||. .|+.||.++|.+|...+...+ .++.|.... ...+|+|+|++.+.+...
T Consensus 159 ~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------------~~~~I~VaT~qsl~~~~~-------- 217 (501)
T PHA02558 159 GKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------------TDAPIVVSTWQSAVKQPK-------- 217 (501)
T ss_pred CeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------------CCCCEEEeeHHHHhhchh--------
Confidence 379999998 588999999999763222233 445554321 347899999999865310
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEeccCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQ 638 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGTPiq 638 (1137)
..+ -.|++||+||+|++.... ....+..+ ++.++++|||||..
T Consensus 218 ---------------~~~--~~~~~iIvDEaH~~~~~~--~~~il~~~~~~~~~lGLTATp~~ 261 (501)
T PHA02558 218 ---------------EWF--DQFGMVIVDECHLFTGKS--LTSIITKLDNCKFKFGLTGSLRD 261 (501)
T ss_pred ---------------hhc--cccCEEEEEchhcccchh--HHHHHHhhhccceEEEEeccCCC
Confidence 012 257899999999997532 34455566 57899999999953
No 26
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.34 E-value=1.1e-11 Score=128.78 Aligned_cols=124 Identities=25% Similarity=0.269 Sum_probs=72.8
Q ss_pred cEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcC--CCcc-----cccccccchhhhhcCCcEEEEehHHHhhhcccCC
Q 001153 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEG--ARNS-----SLSDTSIMDISELVGADIVLTTYDVLKEDLSHDS 571 (1137)
Q Consensus 500 ~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G--~~~~-----~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~ 571 (1137)
++|||||. +|+.||.++|..+... ...+....- .... ................++++++|..+........
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 79999998 7889999999887752 122211110 0000 0000011122335578899999999998753211
Q ss_pred CCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCC
Q 001153 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1137)
Q Consensus 572 ~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPi 637 (1137)
..... ......+..-.+++||+||||+..+... ++.+...++.+++.|||||.
T Consensus 131 ~~~~~-----------~~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDES-----------ARRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp ------------------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccccc-----------hhhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 10000 0001234455788999999999876543 55665688999999999995
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.30 E-value=1.6e-11 Score=120.13 Aligned_cols=111 Identities=18% Similarity=0.121 Sum_probs=77.7
Q ss_pred CCcEEEEeCCchh-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~SLl-~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+.+||+||...+ .||.+++.++... .+.+.++++....... ........+|+++||+.+.......
T Consensus 30 ~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~i~i~t~~~~~~~~~~~------ 97 (144)
T cd00046 30 GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQ-----EKLLSGKTDIVVGTPGRLLDELERL------ 97 (144)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHH-----HHHhcCCCCEEEECcHHHHHHHHcC------
Confidence 3689999999755 5667777877643 4777777775443210 1223467899999999998764310
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhHHHH---HHHHHhccCeEEEEeccC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT---EMALRLYAKHRWCITGTP 636 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~---kal~~L~a~~RwlLTGTP 636 (1137)
.+....|++||+||+|.+.+...... ...........+++||||
T Consensus 98 ----------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ----------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ----------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 13345789999999999998765543 333345778899999999
No 28
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.30 E-value=1.6e-11 Score=127.57 Aligned_cols=114 Identities=22% Similarity=0.227 Sum_probs=75.9
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCC-CeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCP-APILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~EI~k~~~~g~-L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+++||++| .++..||..++.++.+... ....++.+..... .........++++++||+.+.......
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~t~~~l~~~~~~~------ 123 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKRE-----QLRKLESGKTDILVTTPGRLLDLLEND------ 123 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHH-----HHHHHhcCCCCEEEeChHHHHHHHHcC------
Confidence 57999999 5678899999999886322 4555666643211 001111122399999999999875321
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccC-hhHHHHH-HHHHh-ccCeEEEEeccCCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-NAAAATE-MALRL-YAKHRWCITGTPIQR 639 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN-~~S~~~k-al~~L-~a~~RwlLTGTPiqN 639 (1137)
.+....|.++|+||+|++.+ ....... .+..+ +..+++++||||..+
T Consensus 124 ----------------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 124 ----------------LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred ----------------CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 13345688999999999996 3333333 33444 578899999999644
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.92 E-value=6.6e-09 Score=135.47 Aligned_cols=117 Identities=14% Similarity=0.060 Sum_probs=66.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeE-EEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V-~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+++|++||.. |+.||.++|..+..+....+ -+|....-. ....-....|+|+||.++.+.+......
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~--------~~~~~~~~~I~iaTiQtl~~~~~~~~~~--- 532 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLE--------DKFPEDETKVHVATVQGMVKRILYSDDP--- 532 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhh--------hhcccCCCCEEEEEHHHHHHhhhccccc---
Confidence 5899999964 88999999998753222111 122111000 1111235789999999998754211000
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh----------------HHHHHHHHHhccCeEEEEeccCCCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA----------------AAATEMALRLYAKHRWCITGTPIQRK 640 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~----------------S~~~kal~~L~a~~RwlLTGTPiqN~ 640 (1137)
. ..+.--.|++||+||||+.-... ...++.+....-..+++|||||..+.
T Consensus 533 ----------~----~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t 598 (1123)
T PRK11448 533 ----------M----DKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT 598 (1123)
T ss_pred ----------c----ccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch
Confidence 0 00122468899999999953100 12233333322247899999998653
No 30
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.91 E-value=1.1e-07 Score=111.04 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=88.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
|..|+++|+ .|+.|=..-+.+.+.-+.-.+..+.|.-.... ....+.+..|++.|-.++.+|+..
T Consensus 59 ~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~------R~~~w~~~kVfvaTPQvveNDl~~-------- 124 (542)
T COG1111 59 GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEE------REELWAKKKVFVATPQVVENDLKA-------- 124 (542)
T ss_pred CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHH------HHHHHhhCCEEEeccHHHHhHHhc--------
Confidence 479999996 79999999999998755678888999754321 345567889999999999999742
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhcc-CeEEEEeccCCCCChhhhHhhhhhccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a-~~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1137)
..+-.-.+..+|+||||+--... ...++....-.. .+.++||+||= ++.+.+...++=|+.+
T Consensus 125 --------------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe 189 (542)
T COG1111 125 --------------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIE 189 (542)
T ss_pred --------------CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcc
Confidence 12334467899999999954333 222332222233 36899999994 4556666666666554
No 31
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.87 E-value=2.1e-09 Score=123.28 Aligned_cols=126 Identities=21% Similarity=0.335 Sum_probs=86.3
Q ss_pred CcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+..||+|-+++ +.||+..|..|..-..-.+..+....+.++ -..++||||||.++..--.. ....
T Consensus 346 K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~----------~~~~gvvvsTYsMva~t~kR----S~ea 411 (776)
T KOG1123|consen 346 KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF----------PSGAGVVVTTYSMVAYTGKR----SHEA 411 (776)
T ss_pred ccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC----------CCCCcEEEEeeehhhhcccc----cHHH
Confidence 57899999875 799999999998655556777777665432 24578999999998753210 0000
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhcc
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1137)
. .+...|....|..+||||.|.+- .....+.+.-+.+..++.||+|-+... |=..=|+||-
T Consensus 412 e----------k~m~~l~~~EWGllllDEVHvvP--A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLI 472 (776)
T KOG1123|consen 412 E----------KIMDFLRGREWGLLLLDEVHVVP--AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLI 472 (776)
T ss_pred H----------HHHHHHhcCeeeeEEeehhccch--HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceee
Confidence 1 12245788899999999999984 223334444568889999999988642 2233346664
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.71 E-value=1.6e-07 Score=100.14 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=75.5
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh-cCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+|||||.. ++.||...+.++.....+++..++|...... ..... ...+|+|+|.+.+...+...
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~l~~~------ 137 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK------QIRKLKRGPHIVVATPGRLLDLLERG------ 137 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEEChHHHHHHHHcC------
Confidence 4799999975 7889999999987656788888888654321 11222 37899999999887754310
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHH-HHHHHhc-cCeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAAT-EMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~-kal~~L~-a~~RwlLTGTPi 637 (1137)
.+.--.+.++|+||+|.+.+.. .... ..+..+. ....+++|+||-
T Consensus 138 ----------------~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 138 ----------------KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ----------------CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 0112246789999999976543 2222 2333444 467899999997
No 33
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.62 E-value=2.3e-07 Score=116.59 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=64.9
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.++|||||.. |..||.++|.++... .. .+..... .......-.+.+|+|||+.++.+.....
T Consensus 294 ~~vl~lvdR~~L~~Q~~~~f~~~~~~-~~-----~~~~s~~----~L~~~l~~~~~~iivtTiQk~~~~~~~~------- 356 (667)
T TIGR00348 294 PKVFFVVDRRELDYQLMKEFQSLQKD-CA-----ERIESIA----ELKRLLEKDDGGIIITTIQKFDKKLKEE------- 356 (667)
T ss_pred CeEEEEECcHHHHHHHHHHHHhhCCC-CC-----cccCCHH----HHHHHHhCCCCCEEEEEhHHhhhhHhhh-------
Confidence 5799999975 889999999998641 11 0110000 0000011124679999999998632110
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHH-HHhccCeEEEEeccCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal-~~L~a~~RwlLTGTPiqN 639 (1137)
...++ .......||+||||+.... ...+.+ ..++...++++||||+..
T Consensus 357 ------~~~~~------~~~~~~lvIvDEaHrs~~~--~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 357 ------EEKFP------VDRKEVVVIFDEAHRSQYG--ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred ------hhccC------CCCCCEEEEEEcCccccch--HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 00000 1112238999999986532 233444 356778999999999864
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.57 E-value=4.2e-07 Score=113.75 Aligned_cols=113 Identities=13% Similarity=0.203 Sum_probs=74.5
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|.. |..||.+++.+++++-++++.+++|........ .........+.+|||.|...+....
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~-~~~~~i~~g~~~IiVgT~~ll~~~~---------- 353 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRK-ELLETIASGQIHLVVGTHALIQEKV---------- 353 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHH-HHHHHHhCCCCCEEEecHHHHhccc----------
Confidence 3689999986 558999999999875468999999875432100 0001112236799999998876432
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhc---cCeEEEEeccCCCCCh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY---AKHRWCITGTPIQRKL 641 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~---a~~RwlLTGTPiqN~l 641 (1137)
.+. ...+||+||+|++.- .+......... ..+.+++|+||++..+
T Consensus 354 ---------------~~~--~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 354 ---------------EFK--RLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred ---------------ccc--ccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 122 346899999999742 22222222333 5679999999987544
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.53 E-value=5.8e-07 Score=92.50 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=78.7
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-hcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+.+||++|. .++.|=.+++.+++....+++..++|....... .... ....+|+|+|++.+...+....
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ilv~T~~~l~~~~~~~~----- 114 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISED-----QREVLSNQADILVTTPEQLLDLISNGK----- 114 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHH-----HHHHHHTTSSEEEEEHHHHHHHHHTTS-----
T ss_pred ceEEEEeeccccccccccccccccccccccccccccccccccc-----ccccccccccccccCcchhhccccccc-----
Confidence 379999997 588899999999987556788888775442100 1122 2469999999999988654200
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccCh-hHH-HHHHHHHh---ccCeEEEEeccCCCCChhhh
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAA-ATEMALRL---YAKHRWCITGTPIQRKLDDL 644 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-~S~-~~kal~~L---~a~~RwlLTGTPiqN~l~DL 644 (1137)
..+ ....+||+||+|.+-.. ... ....+..+ ...+.+++|+||- .++++|
T Consensus 115 ---------------~~~--~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~~ 169 (169)
T PF00270_consen 115 ---------------INI--SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEKL 169 (169)
T ss_dssp ---------------STG--TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHHH
T ss_pred ---------------ccc--ccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhhC
Confidence 012 23678999999998763 222 33333333 3467999999998 665543
No 36
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.48 E-value=1.5e-05 Score=98.30 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=83.9
Q ss_pred CCcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+.+++.+|.. |+.|=..++.....+ -.+....|....+.. ........+|++.|-.++.+++.+..
T Consensus 106 ~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~-----r~~i~~s~~vff~TpQil~ndL~~~~----- 173 (746)
T KOG0354|consen 106 KGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSN-----RGEIVASKRVFFRTPQILENDLKSGL----- 173 (746)
T ss_pred cceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCc-----hhhhhcccceEEeChHhhhhhccccc-----
Confidence 37899999985 777777888888753 556666665433211 23556778999999999999875311
Q ss_pred chhhhhhcccCCCcchhcc-ccceeEEEecccccc-cChh-HHHHHHHHHhc--cCeEEEEeccCCCCChhhhHhhhhhc
Q 001153 577 DRRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMV-ESNA-AAATEMALRLY--AKHRWCITGTPIQRKLDDLYGLLRFL 651 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~-~i~w~rVILDEAH~I-KN~~-S~~~kal~~L~--a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1137)
.. --.|-.+|+||||+- ||.. +...+....++ ....++||+||= ++.+...+.+.=|
T Consensus 174 -----------------~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L 235 (746)
T KOG0354|consen 174 -----------------HDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNL 235 (746)
T ss_pred -----------------ccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhh
Confidence 11 135789999999994 4433 45555555544 335789999998 6666666655544
Q ss_pred cC
Q 001153 652 KS 653 (1137)
Q Consensus 652 ~p 653 (1137)
..
T Consensus 236 ~a 237 (746)
T KOG0354|consen 236 CA 237 (746)
T ss_pred he
Confidence 43
No 37
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.43 E-value=2.6e-06 Score=95.57 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=89.1
Q ss_pred CCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhcccc-ce------eEEEecccccccChhH------HHH
Q 001153 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRI-FW------WRICLDEAQMVESNAA------AAT 618 (1137)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i-~w------~rVILDEAH~IKN~~S------~~~ 618 (1137)
+.+|+.+||.+|......... .. +-|.++ .| .+||+||+|..||..+ ++.
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~------~~-----------sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g 198 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGK------YR-----------SRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTG 198 (303)
T ss_pred CCCccchhHHHHHhHHhccCC------cc-----------chHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHH
Confidence 467999999999987431100 00 112211 22 2788999999999865 566
Q ss_pred HHHHHh----ccCeEEEEeccCCCCChhhhHhhhhhccCC------CCCchhhhhhhhcCCCCCCCcchHHHHHHHHh--
Q 001153 619 EMALRL----YAKHRWCITGTPIQRKLDDLYGLLRFLKSS------PFSISRWWIEVIRDPYENGDVGAMEFTHKFFK-- 686 (1137)
Q Consensus 619 kal~~L----~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~------~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~-- 686 (1137)
.++..| +.-+.+-.|+|.... +..|- + .-+.+ +|.+...|.+.+ +++...+++.+..-|+
T Consensus 199 ~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Y--m~RLGLWG~gtpf~~~~~f~~a~----~~gGv~amE~vA~dlKa~ 270 (303)
T PF13872_consen 199 IAVLELQNRLPNARVVYASATGASE-PRNMA-Y--MSRLGLWGPGTPFPDFDDFLEAM----EKGGVGAMEMVAMDLKAR 270 (303)
T ss_pred HHHHHHHHhCCCCcEEEecccccCC-Cceee-e--eeeccccCCCCCCCCHHHHHHHH----HhcCchHHHHHHHHHHhc
Confidence 666655 334578899999743 33332 1 12222 355555555544 3455666666655444
Q ss_pred hHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHH
Q 001153 687 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1137)
Q Consensus 687 ~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~ 725 (1137)
..+++|.. ..-.-...++.++||+.|.++|+.
T Consensus 271 G~yiaR~L-------Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 271 GMYIARQL-------SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred chheeeec-------ccCCceEEEEEecCCHHHHHHhcC
Confidence 35666643 466667889999999999999984
No 38
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.33 E-value=2.5e-06 Score=107.70 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=73.4
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|.. |..|..+.+.+++++-++++.+++|........ .........+.+|||+|...+...+
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~v---------- 379 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERR-EILEAIASGEADIVIGTHALIQDDV---------- 379 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH-HHHHHHhCCCCCEEEchHHHhcccc----------
Confidence 3689999986 567999999999875468999999975421100 0001112236899999998875432
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEeccCCCCCh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKL 641 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGTPiqN~l 641 (1137)
.+. +...||+||+|++.- .....+... ...+.+++|+||++..+
T Consensus 380 ---------------~~~--~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 380 ---------------EFH--NLGLVIIDEQHRFGV---EQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred ---------------hhc--ccceEEEechhhhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 122 345799999999742 222233333 24678999999987543
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=5.2e-06 Score=100.58 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=79.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|. +|+.||...+... ++++..+.|...... ............++|+++|.+.+......
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~-------- 118 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRL-------- 118 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhH--------
Confidence 468999997 5778999998864 466666666543210 00000111234689999999998653210
Q ss_pred hhhhhhcccCCCcchhc-cccceeEEEecccccccChh---HHHHH----HHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 001153 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNA---AAATE----MALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~IKN~~---S~~~k----al~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1137)
. ..| ......+||+||||.+-... ...+. ....++....+++|+||-.....|+...+.
T Consensus 119 ---~----------~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 119 ---L----------QTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred ---H----------HHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 0 112 23457799999999985432 11122 222345667899999998877777777665
Q ss_pred hccC
Q 001153 650 FLKS 653 (1137)
Q Consensus 650 FL~p 653 (1137)
+-.|
T Consensus 186 l~~~ 189 (470)
T TIGR00614 186 LKNP 189 (470)
T ss_pred CCCC
Confidence 5443
No 40
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.26 E-value=4.3e-06 Score=102.75 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=68.5
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|.++= .+|+.|=..++..|.|.++.. ....+.. ....+.|.|.||.++......-.+
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~-n~i~~~~-------------~~~s~~i~lsTyqt~~~~~~~~~~----- 276 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGTKM-NKIEDKK-------------GDTSSEIYLSTYQTMTGRIEQKED----- 276 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCccce-eeeeccc-------------CCcceeEEEeehHHHHhhhhcccc-----
Confidence 67888887 468899999999999843222 2222211 112689999999999987643110
Q ss_pred hhhhhhcccCCCcchhccccceeEEEeccccc-ccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~-IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
...++..-+|++||+||||+ +-+.. +.+...-...+.+||+||-.
T Consensus 277 ------------~~~~f~~g~FDlIvIDEaHRgi~~~~----~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 277 ------------EYRRFGPGFFDLIVIDEAHRGIYSEW----SSILDYFDAATQGLTATPKE 322 (875)
T ss_pred ------------ccccCCCCceeEEEechhhhhHHhhh----HHHHHHHHHHHHhhccCccc
Confidence 01235556899999999998 33222 23333334456677999977
No 41
>PRK01172 ski2-like helicase; Provisional
Probab=98.24 E-value=1.1e-05 Score=101.99 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=74.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+++|+|. +|..|+.+++.++.. -+.++..+.|.... ....+..+||+|+|++.+..-..+.
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~--------~~~~~~~~dIiv~Tpek~~~l~~~~------- 129 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRS-LGMRVKISIGDYDD--------PPDFIKRYDVVILTSEKADSLIHHD------- 129 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--------ChhhhccCCEEEECHHHHHHHHhCC-------
Confidence 467899997 578899999988653 25778777776432 2233567899999999876543210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHH-HH---Hhc-cCeEEEEeccCCCCChhhhHhhhhhc
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-AL---RLY-AKHRWCITGTPIQRKLDDLYGLLRFL 651 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~ka-l~---~L~-a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1137)
+..+. ...+||+||+|++.+.. ...... +. .+. ....+++|+|+- +..++- .|+
T Consensus 130 -------------~~~l~--~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la---~wl 189 (674)
T PRK01172 130 -------------PYIIN--DVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA---QWL 189 (674)
T ss_pred -------------hhHHh--hcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH---HHh
Confidence 01122 45799999999996432 222222 22 222 345788999973 345543 455
Q ss_pred cCC
Q 001153 652 KSS 654 (1137)
Q Consensus 652 ~p~ 654 (1137)
+..
T Consensus 190 ~~~ 192 (674)
T PRK01172 190 NAS 192 (674)
T ss_pred CCC
Confidence 443
No 42
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.24 E-value=9.8e-06 Score=97.14 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=73.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|.. |..|+.+.+..+.....+++..+.|...... .........+|+|+|.+.|...+..
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-----~~~~l~~~~~IlV~Tp~rl~~~~~~-------- 140 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMN-----HAEVFSENQDIVVATPGRLLQYIKE-------- 140 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 4699999986 7789888888776544688888887643210 0111124579999999988765421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccCCCCChhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDD 643 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTPiqN~l~D 643 (1137)
..+..-...+||+||||++-... ......+..+. ....+++|+|+-...+.+
T Consensus 141 --------------~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 195 (434)
T PRK11192 141 --------------ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQD 195 (434)
T ss_pred --------------CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHH
Confidence 01222345689999999875432 22222223333 345689999986443443
No 43
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.23 E-value=6.7e-06 Score=108.25 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=72.1
Q ss_pred CcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||+||... ..|..+.|.+.+..-.+++.++.|....... ............||||+|++.+...+.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~~~v~--------- 719 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQSDVK--------- 719 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHhCCCC---------
Confidence 46999999975 4799999988665334677777765432110 000001112467999999987764321
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhc-cCeEEEEeccCCCCCh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKL 641 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~-a~~RwlLTGTPiqN~l 641 (1137)
+ -+..+||+||+|++... ....++.++ ....+++|+||+++.+
T Consensus 720 ----------------~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 720 ----------------W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred ----------------H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHH
Confidence 2 24578999999998432 233445554 4578999999998754
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.19 E-value=9.4e-06 Score=104.76 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=72.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh--hcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~--l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
..+||+||.. |..|....|.+++..-.+++.+++|....... ...... ..+.||||+|...+.+.+
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~---~~~~~~l~~g~~dIVIGTp~ll~~~v-------- 569 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQ---NEILKELASGKIDILIGTHKLLQKDV-------- 569 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHH---HHHHHHHHcCCceEEEchHHHhhCCC--------
Confidence 3689999987 55799999999876445777777775332100 001112 235899999997765432
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhc-cCeEEEEeccCCCCCh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKL 641 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~-a~~RwlLTGTPiqN~l 641 (1137)
.+. +..+||+||+|++.- .....++.+. ....+++|+||++..+
T Consensus 570 -----------------~f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl 614 (926)
T TIGR00580 570 -----------------KFK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTL 614 (926)
T ss_pred -----------------Ccc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHH
Confidence 122 235899999999742 2234445553 4578999999987654
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=98.19 E-value=1.9e-05 Score=100.86 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=75.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|+|+|. +|+.|+.+++.++.+ -++++.++.|.... ....+...||+|+|++.+..-..+.
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~--------~~~~l~~~~IiV~Tpek~~~llr~~------- 131 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDS--------RDEWLGDNDIIVATSEKVDSLLRNG------- 131 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCc--------cccccCCCCEEEECHHHHHHHHhcC-------
Confidence 479999997 688999999998753 26889999986543 1233567899999999876543210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHH-HHHh----ccCeEEEEeccCCCCChhhhHh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALRL----YAKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~ka-l~~L----~a~~RwlLTGTPiqN~l~DL~s 646 (1137)
...+. ...+||+||+|++.+.. ...... +.++ .....++||+|+- +..|+..
T Consensus 132 -------------~~~l~--~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~ 189 (737)
T PRK02362 132 -------------APWLD--DITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD 189 (737)
T ss_pred -------------hhhhh--hcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH
Confidence 00122 34799999999997532 222222 2333 2346789999973 4555543
No 46
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.14 E-value=2.2e-05 Score=94.79 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=70.5
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.+|||||.- |..||.+++.++...-.+++....|....... .......+||+|+|.+.|.......
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~-----~~~l~~~~~IiV~TP~rL~~~~~~~-------- 143 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ-----MMKLRGGVDVLVATPGRLLDLEHQN-------- 143 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHH-----HHHHcCCCcEEEEChHHHHHHHHcC--------
Confidence 589999985 77899999998875445677666665332100 1112246899999999987643210
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhcc-CeEEEEeccCC
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a-~~RwlLTGTPi 637 (1137)
.+.--...+||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 144 --------------~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 144 --------------AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred --------------CcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 1112245689999999875433 222333444543 34789999963
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=98.13 E-value=3.3e-05 Score=98.45 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=75.7
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|+|+|. .|+.|+.+++.+|.. -++++..++|.... ....+..+||+|+|++.+..-+.+.
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~--------~~~~~~~~~IiV~Tpe~~~~ll~~~------- 132 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDS--------TDEWLGKYDIIIATAEKFDSLLRHG------- 132 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCC--------chhhhccCCEEEEcHHHHHHHHhCC-------
Confidence 468999997 578899999987643 35888889886543 1223467899999999876543210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhc-cCeEEEEeccCCCCChhhhHh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~-a~~RwlLTGTPiqN~l~DL~s 646 (1137)
. ..+. +..+||+||+|++... .......+..+. ....+++|+|+- +..|+-.
T Consensus 133 -------~------~~l~--~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 133 -------S------SWIK--DVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred -------c------hhhh--cCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 0 0122 3568999999998643 233333444443 456788999973 3566544
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.08 E-value=2.3e-05 Score=97.71 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=81.0
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|. +|+.++...+... ++.+..+++....... ...........++|+++|.+.+.....
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~--------- 119 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYF--------- 119 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHH---------
Confidence 468999997 5788999998875 4667777765332100 000111123568999999998865321
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-------S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1137)
...+......+||+||||.+.... .+.......++....+++|+|+......|+...+.+
T Consensus 120 -------------~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 120 -------------LNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred -------------HHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 012445577899999999985422 122333334455569999999988877777776654
Q ss_pred cc
Q 001153 651 LK 652 (1137)
Q Consensus 651 L~ 652 (1137)
-.
T Consensus 187 ~~ 188 (591)
T TIGR01389 187 AD 188 (591)
T ss_pred CC
Confidence 33
No 49
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.08 E-value=2.7e-05 Score=94.10 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=71.2
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhh-hcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+||+||.- |..||.++++++... ..+++..++|...... .... ....+|+|+|.+.+...+..
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~------~~~~l~~~~~IvV~Tp~rl~~~l~~------- 140 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGP------QIDSLEHGAHIIVGTPGRILDHLRK------- 140 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHH------HHHHhcCCCCEEEEChHHHHHHHHc-------
Confidence 489999985 778999999987531 2578888877543211 1111 24579999999998775431
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
..+.--.+.+||+||||.+-+.. ......+..++ ....+++|+|+-
T Consensus 141 ---------------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 141 ---------------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred ---------------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 01222356789999999865432 33334444454 345789999973
No 50
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.06 E-value=3e-05 Score=96.93 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=78.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|. +|+.||.+.+... ++.+..+++....... ..........+.+++++|.+.+..+..
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~--------- 131 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNF--------- 131 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHH---------
Confidence 468999997 5778899888865 4566666554322100 000011122467899999988765310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh---HHHHHHHH----HhccCeEEEEeccCCCCChhhhHhhhhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~---S~~~kal~----~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1137)
...|......+||+||||.+-... ...++.+. .++....+++|+|+-.....|+...+.+
T Consensus 132 -------------~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l 198 (607)
T PRK11057 132 -------------LEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (607)
T ss_pred -------------HHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCC
Confidence 012344467899999999986432 11222232 3345668999999988777777776654
Q ss_pred ccC
Q 001153 651 LKS 653 (1137)
Q Consensus 651 L~p 653 (1137)
-.|
T Consensus 199 ~~~ 201 (607)
T PRK11057 199 NDP 201 (607)
T ss_pred CCe
Confidence 433
No 51
>PTZ00424 helicase 45; Provisional
Probab=98.05 E-value=3.9e-05 Score=90.74 Aligned_cols=111 Identities=16% Similarity=0.072 Sum_probs=69.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-hcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+|||+|.. |..|+.+.+..+.....+.+....|...... .... ....+|+|+|.+.+...+...
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 164 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD------DINKLKAGVHMVVGTPGRVYDMIDKR------ 164 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH------HHHHHcCCCCEEEECcHHHHHHHHhC------
Confidence 4689999975 7788888888876533455555555432110 1112 234689999999887644210
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhcc-CeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYA-KHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~a-~~RwlLTGTPi 637 (1137)
.+.--.+++||+||+|.+... .......+..+.. ...+++|+|+-
T Consensus 165 ----------------~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 165 ----------------HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred ----------------CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 112234678999999987543 2344555555543 46788999964
No 52
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.02 E-value=3.3e-05 Score=97.86 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=82.7
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
++.+-|||. +|..+=.+|+.+|-. -+++|.+++|.... ....+..+||+||||+.+-.-..+.
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~~~TgD~~~--------~~~~l~~~~ViVtT~EK~Dsl~R~~------- 140 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLEE-LGIRVGISTGDYDL--------DDERLARYDVIVTTPEKLDSLTRKR------- 140 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHHh-cCCEEEEecCCccc--------chhhhccCCEEEEchHHhhHhhhcC-------
Confidence 588999996 688888888884432 37999999998664 4467899999999999987644321
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh-h-----HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhc
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A-----AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 651 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-~-----S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1137)
+.....-+.||+||+|++... . +-.+++...-...+-++||+|= + |..| +-.||
T Consensus 141 ---------------~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl-p-N~~e---vA~wL 200 (766)
T COG1204 141 ---------------PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL-P-NAEE---VADWL 200 (766)
T ss_pred ---------------cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeec-C-CHHH---HHHHh
Confidence 112334579999999999887 3 3333333222234678899992 2 3333 44566
Q ss_pred cCCCC
Q 001153 652 KSSPF 656 (1137)
Q Consensus 652 ~p~~f 656 (1137)
+-.++
T Consensus 201 ~a~~~ 205 (766)
T COG1204 201 NAKLV 205 (766)
T ss_pred CCccc
Confidence 55543
No 53
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.98 E-value=6.4e-05 Score=92.28 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=70.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||+|.. |..|+.+++..+...-.+++..+.|....... ........+|+|+|.+.|..-+...
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q-----~~~l~~~~~IiV~TPgrL~~~l~~~------- 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ-----LYRIQQGVELIVGTPGRLIDLLSKH------- 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH-----HHHhcCCCCEEEECHHHHHHHHHcC-------
Confidence 4689999985 77899999988875334555544443221100 0111235799999999887654210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~a~~RwlLTGTPi 637 (1137)
...|. ...+||+||||++-.. .....+.+..+.....+++|+|.-
T Consensus 265 -------------~~~l~--~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 265 -------------DIELD--NVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred -------------Cccch--heeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 00122 3468999999987543 234445555666778899999963
No 54
>PTZ00110 helicase; Provisional
Probab=97.97 E-value=6.1e-05 Score=92.96 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=69.6
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.+|||||.. |..|+.+++.++.....+++.+..|....... ........+|+|+|.+.|...+...
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q-----~~~l~~~~~IlVaTPgrL~d~l~~~-------- 271 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQ-----IYALRRGVEILIACPGRLIDFLESN-------- 271 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHH-----HHHHHcCCCEEEECHHHHHHHHHcC--------
Confidence 489999985 77899999999886545666655554322100 1112245799999999887654210
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccC
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTP 636 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTP 636 (1137)
.+.--...+||+||||++-... -...+.+..++ ....+++|+|.
T Consensus 272 --------------~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 272 --------------VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred --------------CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0111235689999999876543 23334444453 34568899995
No 55
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.93 E-value=9.7e-05 Score=88.37 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=70.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh-cCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+||+||.. |..||.+++.++...-++++..+.|...... ....+ ...||+|+|.+.+...+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~------~~~~l~~~~~IlV~TP~~l~~~l~~------- 150 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK------QLKVLESGVDILIGTTGRLIDYAKQ------- 150 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 4689999985 7789999988876544688888877543211 11111 3479999999998765421
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhcc---CeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA---KHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a---~~RwlLTGTPi 637 (1137)
..+.--...+||+||||++-+.. ......+..+.. ...+++|+|.-
T Consensus 151 ---------------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 ---------------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred ---------------CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 01222346789999999875432 222333344432 33578899964
No 56
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.85 E-value=0.00014 Score=88.29 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=70.7
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
...|||+|.. |..||.+++..+...-++++..++|....... .........+|+|+|.+.|.......
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~----~~~~~~~~~~Iiv~TP~~Ll~~~~~~------- 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ----LKQLEARFCDILVATPGRLLDFNQRG------- 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH----HHHHhCCCCCEEEECHHHHHHHHHcC-------
Confidence 4689999985 77899999988765446788888876432110 01111235799999999986532110
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc---cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~---a~~RwlLTGTPi 637 (1137)
...|. ...+||+||+|.+.+.. ....+.+..+. ....+++|+|..
T Consensus 232 -------------~~~l~--~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 232 -------------EVHLD--MVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred -------------Ccccc--cCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 00122 34689999999986543 22333334442 245789999953
No 57
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.83 E-value=0.00018 Score=90.19 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=69.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+||+||.. |..||.+++.++... ..+++..++|....... ........+|||+|.+.+...+..
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q-----~~~l~~~~~IVVgTPgrl~d~l~r------- 142 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ-----LRALRQGPQIVVGTPGRLLDHLKR------- 142 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHH-----HHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 3589999985 778999998876531 25777776665432100 011123578999999998765421
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhcc-CeEEEEeccC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 636 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a-~~RwlLTGTP 636 (1137)
..+.--....|||||||.+-+.. ......+..++. ...+++|+|.
T Consensus 143 ---------------~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 143 ---------------GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred ---------------CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccC
Confidence 01112245679999999764432 334445555654 4468889995
No 58
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.82 E-value=0.00017 Score=89.43 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=71.3
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-hcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+|||||.- |..|+.+++.++...-.+++..++|...... .... ....||||+|.+.|...+...
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~------q~~~l~~~~dIiV~TP~rL~~~l~~~------ 152 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK------QRELLQQGVDVIIATPGRLIDYVKQH------ 152 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHHhCCCCEEEECHHHHHHHHHhc------
Confidence 4699999985 7789999999987655678888777543211 1111 235799999999887654210
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc---cCeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~---a~~RwlLTGTPi 637 (1137)
..+..-...+|||||||.+-... ......+..+. ....+++|+|.-
T Consensus 153 ---------------~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 153 ---------------KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred ---------------cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc
Confidence 00111235679999999875422 22333344444 345788999964
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=97.72 E-value=0.00031 Score=93.16 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=56.5
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh--cCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
..+|||+|.. |+.||.+.+.++.....+.+.+..|.......... .....+ ..++|+|+|.+.|...+.
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~-~~~~~l~~~~~~IlV~Tp~rL~~~~~------- 195 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKE-EFLERLKEGDFDILVTTSQFLSKNFD------- 195 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHH-HHHHHHhcCCCCEEEECHHHHHHHHH-------
Confidence 4689999985 77899999999886445555444433211000000 011112 358999999999887542
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEeccccccc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IK 611 (1137)
.+....++.||+||||++-
T Consensus 196 -----------------~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 196 -----------------ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred -----------------hccccccCEEEEEChHHhh
Confidence 1333458899999999854
No 60
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.70 E-value=0.00025 Score=89.65 Aligned_cols=107 Identities=12% Similarity=0.013 Sum_probs=65.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+||++|.. |..||.+.+.+++ +.++.+++|........ ...........+|||.|.+.+..
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~-~~~~~~~~g~~~IVVgTrsal~~------------ 254 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERL-DEWRKAKRGEAKVVIGARSALFL------------ 254 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHH-HHHHHHHcCCCCEEEeccHHhcc------------
Confidence 4699999985 7799999999987 36888888864321000 00011122457899999876532
Q ss_pred hhhhhhcccCCCcchhccccceeEEEeccccccc--ChhHHHH--HH---H-HHhccCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAAAT--EM---A-LRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IK--N~~S~~~--ka---l-~~L~a~~RwlLTGTPiq 638 (1137)
++. +...||+||+|... ......+ +. . ........+++|+||..
T Consensus 255 ---------------p~~--~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~ 306 (679)
T PRK05580 255 ---------------PFK--NLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSL 306 (679)
T ss_pred ---------------ccc--CCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCH
Confidence 222 35799999999753 2221111 11 1 12344567889999963
No 61
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.70 E-value=0.00013 Score=89.02 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=80.1
Q ss_pred cEEEEeCCchh-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~SLl-~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
-+...+|+.++ .|=...+.+|+++-+++|....|.-+..... .....-.....||||=|+..+...+..
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~-~~l~~l~~G~~~ivVGTHALiQd~V~F--------- 382 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARK-EILEQLASGEIDIVVGTHALIQDKVEF--------- 382 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHH-HHHHHHhCCCCCEEEEcchhhhcceee---------
Confidence 35678899877 5999999999998789999999986543211 111222335689999999998876531
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHh-c-cCeEEEEeccCCCCChh
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-Y-AKHRWCITGTPIQRKLD 642 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L-~-a~~RwlLTGTPiqN~l~ 642 (1137)
-+..+||+||=|++.- .+-..++.- . ..|.++||+|||+.++.
T Consensus 383 ------------------~~LgLVIiDEQHRFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 383 ------------------HNLGLVIIDEQHRFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred ------------------cceeEEEEeccccccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 1345899999999863 333444433 3 47999999999999874
No 62
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.69 E-value=0.0004 Score=81.42 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=69.2
Q ss_pred cEEEEeCC-chhHHHHHHHHhcC----CCCCCeEEEEcCCCccc---cc-------cccc-----chhhhhcCCcEEEEe
Q 001153 500 ATLIVCPA-PILAQWDAEITRHT----RPGSLKTCIYEGARNSS---LS-------DTSI-----MDISELVGADIVLTT 559 (1137)
Q Consensus 500 ~tLIV~P~-SLl~QW~~EI~k~~----~~g~L~V~vy~G~~~~~---~~-------~~~~-----~~~~~l~~~DVVITT 559 (1137)
++++|+|. ++..+|.+.+.+++ +.....+..+.|..... .. .... .........+|++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999996 57788888888876 22357788888862211 00 0000 000112467899999
Q ss_pred hHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhH-------HHHHHHHHhc-cCeEEE
Q 001153 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-------AATEMALRLY-AKHRWC 631 (1137)
Q Consensus 560 YetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S-------~~~kal~~L~-a~~Rwl 631 (1137)
++.+..-..... .++........-...+||+||+|.+..... .....+.... ..+.++
T Consensus 121 p~~l~~llr~~~--------------~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 186 (357)
T TIGR03158 121 PDIFVYLTRFAY--------------IDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVF 186 (357)
T ss_pred HHHHHHHHhhhc--------------cCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEE
Confidence 999875321100 000000001122578999999999875331 1122222222 357899
Q ss_pred EeccCCC
Q 001153 632 ITGTPIQ 638 (1137)
Q Consensus 632 LTGTPiq 638 (1137)
+||||-.
T Consensus 187 lSAT~~~ 193 (357)
T TIGR03158 187 LSATPDP 193 (357)
T ss_pred EecCCCH
Confidence 9999854
No 63
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.69 E-value=0.0004 Score=90.32 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=68.8
Q ss_pred CcEEEEeCC-chhHHHHHH-------HHhcC-----CCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhh
Q 001153 499 GATLIVCPA-PILAQWDAE-------ITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKE 565 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~E-------I~k~~-----~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~ 565 (1137)
..+|+|+|. .|..|+.+. +.+++ ..+.+++.+++|....... ........+|+|||.+.+..
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r-----~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEK-----QKMLKKPPHILITTPESLAI 159 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHH-----HHHHhCCCCEEEecHHHHHH
Confidence 368999997 466676653 33332 1126788999997543210 00112357999999999875
Q ss_pred hcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh-----ccCeEEEEeccCCC
Q 001153 566 DLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-----YAKHRWCITGTPIQ 638 (1137)
Q Consensus 566 d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L-----~a~~RwlLTGTPiq 638 (1137)
.+... .....|.. ..+||+||+|.+-+.. ......+.+| ....++++|+|.-
T Consensus 160 ll~~~------------------~~~~~l~~--l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~- 218 (876)
T PRK13767 160 LLNSP------------------KFREKLRT--VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE- 218 (876)
T ss_pred HhcCh------------------hHHHHHhc--CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC-
Confidence 43210 00012332 3579999999987432 2233333333 2356899999963
Q ss_pred CChhhhH
Q 001153 639 RKLDDLY 645 (1137)
Q Consensus 639 N~l~DL~ 645 (1137)
+++++-
T Consensus 219 -~~~~va 224 (876)
T PRK13767 219 -PLEEVA 224 (876)
T ss_pred -CHHHHH
Confidence 344443
No 64
>COG4889 Predicted helicase [General function prediction only]
Probab=97.67 E-value=6.1e-05 Score=92.12 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=27.6
Q ss_pred ccceeEEEecccccccChh-----HHHHHHH---HHhccCeEEEEeccCC
Q 001153 596 RIFWWRICLDEAQMVESNA-----AAATEMA---LRLYAKHRWCITGTPI 637 (1137)
Q Consensus 596 ~i~w~rVILDEAH~IKN~~-----S~~~kal---~~L~a~~RwlLTGTPi 637 (1137)
--.|+.||+||||+--... ...+-.+ ..+++..|+-+|+||=
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred CCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 3469999999999853221 1111111 2467888999999993
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.57 E-value=0.00035 Score=89.89 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=72.1
Q ss_pred CcEEEEeCCchh-HHHHHHHHhcCCC--CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAPIL-AQWDAEITRHTRP--GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~EI~k~~~~--g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
...|+|-|..-+ ..=.+.+.++... +.+++.+|+|....... ..-.-...+|+||||++|-..+-...+
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r-----~~~~~~pp~IllTNpdMLh~~llr~~~--- 187 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEER-----RAIIRNPPDILLTNPDMLHYLLLRNHD--- 187 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHH-----HHHHhCCCCEEEeCHHHHHHHhccCcc---
Confidence 378999998655 4445556665542 25789999998654211 122346689999999999874321100
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHHHhccC--------eEEEEecc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAK--------HRWCITGT 635 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~~L~a~--------~RwlLTGT 635 (1137)
++ ....-++.+||+||+|..+... |..+-.+++|.-. .-++.|+|
T Consensus 188 ----------~~-----~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 188 ----------AW-----LWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred ----------hH-----HHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 00 1112238899999999987654 7777777776422 34777777
No 66
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.56 E-value=0.00073 Score=86.32 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=69.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
...|||+|.- |..|=..++.++.. ..+++.+|+|...... ........+|||||.+++...+-..
T Consensus 82 ~~aL~l~PtraLa~q~~~~l~~l~~-~~i~v~~~~Gdt~~~~------r~~i~~~~~IivtTPd~L~~~~L~~------- 147 (742)
T TIGR03817 82 ATALYLAPTKALAADQLRAVRELTL-RGVRPATYDGDTPTEE------RRWAREHARYVLTNPDMLHRGILPS------- 147 (742)
T ss_pred cEEEEEcChHHHHHHHHHHHHHhcc-CCeEEEEEeCCCCHHH------HHHHhcCCCEEEEChHHHHHhhccc-------
Confidence 3689999975 66777778888763 3688999999754311 1111234789999999987532100
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh-hHHHHHHHHHhc--------cCeEEEEeccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAATEMALRLY--------AKHRWCITGTP 636 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-~S~~~kal~~L~--------a~~RwlLTGTP 636 (1137)
..+ ....|. +-.+||+||||.+... .+.....+..|+ ....+++|+|-
T Consensus 148 ------~~~---~~~~l~--~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi 204 (742)
T TIGR03817 148 ------HAR---WARFLR--RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT 204 (742)
T ss_pred ------hhH---HHHHHh--cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 000 001232 2368999999998652 344444444442 23578999994
No 67
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.52 E-value=3.2e-05 Score=98.35 Aligned_cols=107 Identities=12% Similarity=-0.025 Sum_probs=76.1
Q ss_pred HHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHH--HHHHHHHhhhc-CCCC----cCeeEEecCC---------
Q 001153 815 KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM--AVVEEHSEDFR-LDPL----LNIHLHHNLT--------- 878 (1137)
Q Consensus 815 ~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l--~~~~~~~~~f~-~D~~----~~lh~~~Nl~--------- 878 (1137)
....++.+.++++|||....|+.++..+.--........ ....+-...|. +|-+ +....+.||.
T Consensus 1214 ~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1214 YIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred HHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhheec
Confidence 456677789999999999999999987654433332221 22333333332 2222 1112244443
Q ss_pred -cCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhh
Q 001153 879 -EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKC 921 (1137)
Q Consensus 879 -dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~ 921 (1137)
=.||..+.||+ |+|||||++++.|+|++..+|+||.|+...+-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~ 1338 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITS 1338 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhh
Confidence 68999999999 99999999999999999999999999888765
No 68
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.43 E-value=0.0036 Score=75.49 Aligned_cols=96 Identities=24% Similarity=0.337 Sum_probs=66.1
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCC-eEEEEcCCCcccccccccchhhhhc-CCcEEEEehHHHhhhcccCCCCCcc
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L-~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+||++|.- |..|=..++.++.....+ .+++|-|..... ....+. ..||||+|-+.+.-.+...
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~-------Q~~~l~~gvdiviaTPGRl~d~le~g------ 233 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP-------QLRDLERGVDVVIATPGRLIDLLEEG------ 233 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH-------HHHHHhcCCcEEEeCChHHHHHHHcC------
Confidence 599999997 778999999999885555 456666665432 334444 4899999999988766421
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHh
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL 624 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L 624 (1137)
.+.--...++|||||.++-.. ..+.-+.+..+
T Consensus 234 ----------------~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i 267 (519)
T KOG0331|consen 234 ----------------SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQI 267 (519)
T ss_pred ----------------CccccceeEEEeccHHhhhccccHHHHHHHHHhc
Confidence 122224558999999986433 35556666666
No 69
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.00063 Score=83.19 Aligned_cols=107 Identities=11% Similarity=0.014 Sum_probs=68.0
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+||++|. +|..|+.+.+++.+ ..++.++||.-....... ........+.+|||+|+..+-.
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~-~~~~~~~g~~~IVVGTrsalf~------------ 89 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ-AWRKVKNGEILVVIGTRSALFL------------ 89 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH-HHHHHHcCCCCEEECChHHHcC------------
Confidence 469999997 57899999999887 357888887643211000 0011122467899999887642
Q ss_pred hhhhhhcccCCCcchhccccceeEEEeccccccc--ChhHH------HHHHHHHhccCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAA------ATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IK--N~~S~------~~kal~~L~a~~RwlLTGTPiq 638 (1137)
++. +..+||+||.|... ..... .+...........+++|+||..
T Consensus 90 ---------------p~~--~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 90 ---------------PFK--NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred ---------------ccc--CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 222 35899999999753 22221 1222233456678999999973
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.33 E-value=0.0065 Score=76.51 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=59.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCC---CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRP---GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~---g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+.++|++|.- +..|...++.+...- ...++.+-.|...... ........+++|.|......
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~------~~t~~k~~~Ilv~T~~L~l~--------- 287 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL------INTNPKPYGLVFSTHKLTLN--------- 287 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHH------hhcccCCCCEEEEeCccccc---------
Confidence 5799999975 556888888764321 1345555555432110 01122356898887432111
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhc-c-CeEEEEeccCC
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-A-KHRWCITGTPI 637 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~-a-~~RwlLTGTPi 637 (1137)
.| -....||+||||..-...-.....++.+. . +..+++|+|+-
T Consensus 288 ------------------~L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 288 ------------------KL--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred ------------------cc--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 12 24568999999997544433333333332 2 35799999973
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.27 E-value=0.00096 Score=77.84 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=68.0
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCccc-c---cccc-c--------chhhhhcCCcEEEEehHHHh
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSS-L---SDTS-I--------MDISELVGADIVLTTYDVLK 564 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~-~---~~~~-~--------~~~~~l~~~DVVITTYetL~ 564 (1137)
+..++|+|. +++.|+.+.+..++. . ++..++|..... . .... . .........+|+++|.+.+.
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~ 106 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFG--S-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVL 106 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhC--c-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHH
Confidence 478999996 688999999999874 2 455555542210 0 0000 0 00111235679999999987
Q ss_pred hhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHHHhc--cCeEEEEeccCC
Q 001153 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLY--AKHRWCITGTPI 637 (1137)
Q Consensus 565 ~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~~L~--a~~RwlLTGTPi 637 (1137)
..+.... ....-.+..+.-.+||+||+|.+.... ......+..+. ....+++|+|+-
T Consensus 107 ~~~~~~~----------------~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp 166 (358)
T TIGR01587 107 KSVFGEF----------------GHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLP 166 (358)
T ss_pred HHHhccc----------------chHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCch
Confidence 6542100 000012333344789999999987542 22333333343 345688999964
No 72
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.26 E-value=0.0018 Score=84.01 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=73.0
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch--hhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~--~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+.+|||+|. +|+.+....+... .+++..+.|...... ...... ......++|+++|-+.+...-.
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~e-q~~ilr~l~s~~g~~~ILyvTPERL~~~d~------- 568 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAE-QLEILQELSSEYSKYKLLYVTPEKVAKSDS------- 568 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHH-HHHHHHHHHhcCCCCCEEEEChHHhhcchH-------
Confidence 469999997 5666455555442 466655555432110 000000 0122568999999998864200
Q ss_pred cchhhhhhcccCCCcchhcc-ccceeEEEecccccccChh---HHHHHHH----HHhccCeEEEEeccCCCCChhhhHhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMVESNA---AAATEMA----LRLYAKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~-~i~w~rVILDEAH~IKN~~---S~~~kal----~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
..+.. ..+. .....+||+||||.+-... -..++.+ ..+.....++||+|...+...|+...
T Consensus 569 ----ll~~L-------~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 569 ----LLRHL-------ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred ----HHHHH-------HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHH
Confidence 00000 0011 1235689999999975432 1122222 23456678999999988888888777
Q ss_pred hhhcc
Q 001153 648 LRFLK 652 (1137)
Q Consensus 648 L~FL~ 652 (1137)
|....
T Consensus 638 L~l~~ 642 (1195)
T PLN03137 638 LGLVN 642 (1195)
T ss_pred cCCCC
Confidence 65443
No 73
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.18 E-value=0.0024 Score=64.85 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=55.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.+.+||+.|.-.+. +|+.+... ...+.+-.... ........-|-+++|.++...+.
T Consensus 33 ~~rvLvL~PTRvva---~em~~aL~--~~~~~~~t~~~----------~~~~~g~~~i~vMc~at~~~~~~--------- 88 (148)
T PF07652_consen 33 RLRVLVLAPTRVVA---EEMYEALK--GLPVRFHTNAR----------MRTHFGSSIIDVMCHATYGHFLL--------- 88 (148)
T ss_dssp T--EEEEESSHHHH---HHHHHHTT--TSSEEEESTTS----------S----SSSSEEEEEHHHHHHHHH---------
T ss_pred cCeEEEecccHHHH---HHHHHHHh--cCCcccCceee----------eccccCCCcccccccHHHHHHhc---------
Confidence 36899999998774 35555443 34432221111 11223455688899999887542
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHH-Hh---ccCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RL---YAKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~-~L---~a~~RwlLTGTPiq 638 (1137)
.+....+|+.||+||+|.. .+.|-+..... .+ .....+.+|+||--
T Consensus 89 --------------~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 89 --------------NPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp --------------TSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred --------------CcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 1234468999999999984 44454444332 22 12367899999953
No 74
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.14 E-value=0.0052 Score=78.98 Aligned_cols=132 Identities=13% Similarity=0.085 Sum_probs=69.2
Q ss_pred CcEEEEeCCc-hhHHHHHHHH-----hcCC----CCCCeEEEEcCCCcccccccccc-hhhhh--------cCCcEEEEe
Q 001153 499 GATLIVCPAP-ILAQWDAEIT-----RHTR----PGSLKTCIYEGARNSSLSDTSIM-DISEL--------VGADIVLTT 559 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~-----k~~~----~g~L~V~vy~G~~~~~~~~~~~~-~~~~l--------~~~DVVITT 559 (1137)
..+|||||.. +......=+. .|+. ...++..+|...++.+......+ ....+ ..-.|+|+|
T Consensus 90 ~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~n 169 (986)
T PRK15483 90 FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLIN 169 (986)
T ss_pred cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEe
Confidence 5799999984 4444443322 3332 22477788886542111000000 11111 135699999
Q ss_pred hHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 560 YetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
-+.|.++... ....++... ... ...-..+.. .=-.||+||+|++... .+..+++..|+..+.+--|+|--.
T Consensus 170 iqa~n~~~~~---~~~~D~~l~--~g~-~~p~~~i~~-~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 170 AGMLNSASMT---RDDYDQTLL--GGF-TSPVDALAA-TRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred hHHhcccccc---cchhhhhhc--cCC-CChHHHHHh-CCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCC
Confidence 9999765210 000000000 000 000001111 1236999999999653 356688899999998999999754
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.04 E-value=0.0028 Score=79.94 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=65.7
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCC-CcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~-~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.++||+|.. |..||.+++..++..-++.|.+..+. ....... ........+||+++|.+.|..++-.+.
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~---~~rr~~y~~dIvygTp~~LgfDyLrD~------ 183 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDA---NEKRKIYNSDIVYTTNSALGFDYLIDN------ 183 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCH---HHHHHhCCCCEEEECchhhhhhHHHHH------
Confidence 589999986 66787777755543225666554332 2111100 011222468999999999965431100
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1137)
+...+ ..+..-...++|+||||.+--.. ++.-+++||.|-.. .++|...
T Consensus 184 ---l~~~~------~~~~~r~l~~~IVDEaDsILiDe-----------artpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 184 ---LASNK------EGKFLRPFNYVIVDEVDSVLLDS-----------AQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred ---hhcch------hhcccccCcEEEEecHhhHhhcc-----------CcCCeeeeCCCccc--hHHHHHH
Confidence 00000 01112356789999999873222 44568899977533 3466654
No 76
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.86 E-value=0.0066 Score=76.85 Aligned_cols=136 Identities=14% Similarity=0.197 Sum_probs=83.5
Q ss_pred cEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.++-|+|. +|..--.+-+.+.+.+-+++|.-+.|.... ...+..+.+|+|||-+..----.+. .++
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql--------~~tei~~tqiiVTTPEKwDvvTRk~----~~d- 232 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL--------TKTEIADTQIIVTTPEKWDVVTRKS----VGD- 232 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh--------hHHHHHhcCEEEecccceeeeeeee----ccc-
Confidence 68888995 454433333433333337999999998654 3455889999999987532110000 000
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHH-----HHHHHHH----hccCeEEEEeccCCCCChhhhHhhhh
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA-----ATEMALR----LYAKHRWCITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~-----~~kal~~----L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1137)
+.|.. .-.+||+||.|++...... .++.++. ...-+-++||+| ++| +-.+-+
T Consensus 233 -------------~~l~~-~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSAT-lPN----~eDvA~ 293 (1230)
T KOG0952|consen 233 -------------SALFS-LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSAT-LPN----YEDVAR 293 (1230)
T ss_pred -------------hhhhh-heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeecc-CCC----HHHHHH
Confidence 11111 2358999999999887643 3444432 234566889999 233 445678
Q ss_pred hccCCCCCchhhhhhhhc
Q 001153 650 FLKSSPFSISRWWIEVIR 667 (1137)
Q Consensus 650 FL~p~~f~~~~~F~~~~~ 667 (1137)
||+..++.....|...|.
T Consensus 294 fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 294 FLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HhcCCCccceeeeccccc
Confidence 998887777667766664
No 77
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.78 E-value=0.0066 Score=78.45 Aligned_cols=113 Identities=20% Similarity=0.210 Sum_probs=71.8
Q ss_pred CcEEEEeCCchhH-HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~SLl~-QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+-+-|+||++|+. |=-+-|..-+.+-.++|-+...-.... ........-..++.||||=|+..|.+++..
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~k-E~~~il~~la~G~vDIvIGTHrLL~kdv~F-------- 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAK-EQKEILKGLAEGKVDIVIGTHRLLSKDVKF-------- 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHH-HHHHHHHHHhcCCccEEEechHhhCCCcEE--------
Confidence 4588999999884 555555444432234554444332211 001111222346789999999999987632
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhcc-CeEEEEeccCCCCChh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLD 642 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a-~~RwlLTGTPiqN~l~ 642 (1137)
. +-..||+||=|+..= +.-..++.|++ .+.+-||+|||+..|.
T Consensus 715 -----------------k--dLGLlIIDEEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -----------------K--DLGLLIIDEEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -----------------e--cCCeEEEechhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 1 234899999999864 33456677764 5899999999999773
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.75 E-value=0.0046 Score=82.36 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=55.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCe---EEEEcCCCcccccccccchhhhh--cCCcEEEEehHHHhhhcccCCC
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLK---TCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSD 572 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~---V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~ 572 (1137)
..+|||+|.. |..|+.+++.+++..-+++ +..|+|....... ......+ ..+||||+|...|...+.
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~---~~~~~~l~~~~~dIlV~Tp~rL~~~~~---- 194 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEK---KEFMERIENGDFDILITTTMFLSKNYD---- 194 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHH---HHHHHHHhcCCCCEEEECHHHHHHHHH----
Confidence 4689999985 6789999999987532333 3357775322100 0001112 358999999999876432
Q ss_pred CCccchhhhhhcccCCCcchhccccceeEEEecccccccC
Q 001153 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1137)
Q Consensus 573 ~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN 612 (1137)
.+.. .++.+|+||||++-.
T Consensus 195 --------------------~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 195 --------------------ELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred --------------------HhcC-CCCEEEEeChHhhhh
Confidence 1222 789999999998744
No 79
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.62 E-value=0.018 Score=73.64 Aligned_cols=39 Identities=15% Similarity=-0.060 Sum_probs=23.7
Q ss_pred eeEEEecccccccChhHHHHHHHHHh--cc----CeEEEEeccCC
Q 001153 599 WWRICLDEAQMVESNAAAATEMALRL--YA----KHRWCITGTPI 637 (1137)
Q Consensus 599 w~rVILDEAH~IKN~~S~~~kal~~L--~a----~~RwlLTGTPi 637 (1137)
-.++||||||..........+.+..+ .. ...+++|+|+-
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 45899999994333333333333332 22 36899999984
No 80
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.47 E-value=0.0077 Score=70.98 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 497 ATGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 497 ~~~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.+-..+||+|.- |..|=.++|.+|++..++.|+...|...-................||+|+|-+.|..++....
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k---- 289 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK---- 289 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC----
Confidence 345789999986 567999999999998889999999986543322222233334467999999999998775311
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1137)
.+.--+-.++|+|||.++-+..
T Consensus 290 -----------------~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 290 -----------------SFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred -----------------CcchhhceEEEechHHHHHHHH
Confidence 2223345579999999987643
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=95.95 E-value=0.042 Score=69.97 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=77.6
Q ss_pred cEEEEeCCchhH-HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~SLl~-QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.+|-|.|.--+. -=..-+..|...-++.|.+-||.......+ .......||+|||-++|.--+...
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~-----r~~~~PPdILiTTPEsL~lll~~~-------- 141 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQ-----KMLKNPPHILITTPESLAILLNSP-------- 141 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhh-----hccCCCCcEEEeChhHHHHHhcCH--------
Confidence 578888864332 222222222222268888889875543221 122245899999999998865320
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhHhhhhhcc
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~----a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1137)
.....|..+. .||+||.|.+.+.+ ++++-.+.+|. ---|++||+| +.+..-+.+||.
T Consensus 142 ----------~~r~~l~~vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSAT-----V~~~~~varfL~ 204 (814)
T COG1201 142 ----------KFRELLRDVR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSAT-----VGPPEEVAKFLV 204 (814)
T ss_pred ----------HHHHHhcCCc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhc-----cCCHHHHHHHhc
Confidence 0112355554 69999999988665 66666666653 2569999999 445666677776
Q ss_pred CC
Q 001153 653 SS 654 (1137)
Q Consensus 653 p~ 654 (1137)
..
T Consensus 205 g~ 206 (814)
T COG1201 205 GF 206 (814)
T ss_pred CC
Confidence 65
No 82
>PRK14701 reverse gyrase; Provisional
Probab=95.70 E-value=0.032 Score=76.48 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=56.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCC--CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPG--SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g--~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
..+|||+|.. |+.|..+.+..++..- ..++..++|....... ......-...++||+|+|-+.+...+.
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~-~~~~~~l~~g~~dILV~TPgrL~~~~~------- 194 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEK-EEFLERIENGDFDILVTTAQFLARNFP------- 194 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECCchhHHhHH-------
Confidence 3689999985 7789999999876421 3566778776432100 000001112358999999987765431
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEeccccccc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IK 611 (1137)
.+....+.++|+||||.+-
T Consensus 195 -----------------~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 195 -----------------EMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred -----------------HHhhCCCCEEEEECceecc
Confidence 1122568899999999873
No 83
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.50 E-value=0.048 Score=69.62 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=62.3
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCc-ccccccccchhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~EI~k~~~~g~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
..++||+|+..+. .|...+-++. ++++.+..|... .. ........||++.|...+.-|+-.+.-.
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~l---Gl~v~~i~g~~~~~~-------~r~~~y~~dIvygT~~~l~fDyLrd~~~ 189 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFL---GLTVGLNFSDIDDAS-------EKKAIYEADIIYTTNSELGFDYLRDNLA 189 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCcHH-------HHHHhcCCCEEEECCccccchhHHhccc
Confidence 4689999998663 6888888887 699988877543 11 1223345899999977664332110000
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccC
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTP 636 (1137)
.. +..+..-...++|+|||+.+-=.. ++.-+++||.|
T Consensus 190 ~~---------------~~~~~~r~~~~~IvDEaDsiLiDe-----------a~tpliisg~~ 226 (790)
T PRK09200 190 DS---------------KEDKVQRPLNYAIIDEIDSILLDE-----------AQTPLIISGKP 226 (790)
T ss_pred cc---------------hhhhcccccceEEEeccccceecc-----------CCCceeeeCCC
Confidence 00 011233457899999999874222 33457788755
No 84
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.49 E-value=0.23 Score=53.36 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=22.4
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEeccCCC
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQ 638 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGTPiq 638 (1137)
.|+.||+|||-.+.-.. ++..| .+..+++|-|=|-|
T Consensus 192 ~~d~vIvDEAsq~~e~~-----~l~~l~~~~~~~vlvGD~~Q 228 (236)
T PF13086_consen 192 KFDVVIVDEASQITEPE-----ALIPLSRAPKRIVLVGDPKQ 228 (236)
T ss_dssp --SEEEETTGGGS-HHH-----HHHHHTTTBSEEEEEE-TTS
T ss_pred cCCEEEEeCCCCcchHH-----HHHHHHHhCCEEEEECChhh
Confidence 79999999998875322 23333 34489999998766
No 85
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.35 E-value=0.079 Score=71.76 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=69.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHh-----------cC-CCCCCeEEEEcCCCcccccccccchhhhh-cCCcEEEEehHHHh
Q 001153 499 GATLIVCPAP-ILAQWDAEITR-----------HT-RPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 564 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k-----------~~-~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~ 564 (1137)
..+|+|+|.- |..|=.++++. +. ....++|.+++|...... ....+ ...||+|||.+.|.
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~e------R~rll~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQE------RSKLTRNPPDILITTPESLY 111 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHH------HHHHhcCCCCEEEecHHHHH
Confidence 4699999975 43333333321 10 112588999999754321 11112 35799999999987
Q ss_pred hhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-----cCeEEEEeccCC
Q 001153 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-----AKHRWCITGTPI 637 (1137)
Q Consensus 565 ~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-----a~~RwlLTGTPi 637 (1137)
.-+... . ...|..+ ..||+||+|.+.+.+ +.....+.+|. ...+|++|+|=
T Consensus 112 ~LLtsk------~-------------r~~L~~V--r~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI- 169 (1490)
T PRK09751 112 LMLTSR------A-------------RETLRGV--ETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATV- 169 (1490)
T ss_pred HHHhhh------h-------------hhhhccC--CEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeC-
Confidence 643210 0 0123333 479999999987542 34444444432 34689999995
Q ss_pred CCChhhhHh
Q 001153 638 QRKLDDLYG 646 (1137)
Q Consensus 638 qN~l~DL~s 646 (1137)
++++++-.
T Consensus 170 -~n~eevA~ 177 (1490)
T PRK09751 170 -RSASDVAA 177 (1490)
T ss_pred -CCHHHHHH
Confidence 33566543
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.09 E-value=0.067 Score=67.56 Aligned_cols=100 Identities=9% Similarity=-0.025 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHhhhc--------------
Q 001153 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEAMAVVEEHSEDFR-------------- 864 (1137)
Q Consensus 802 t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~---y~~~l~~~~~~~~~f~-------------- 864 (1137)
+..+-...+++.+. +..+.++.+|||++.....+.|.+.+.+.... +...-..++..+-.|.
T Consensus 386 t~~~k~~ai~~~i~-~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAg 464 (745)
T TIGR00963 386 TEEEKWKAVVDEIK-ERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAG 464 (745)
T ss_pred CHHHHHHHHHHHHH-HHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEecccc
Confidence 44555556655543 23456799999999999999999888765321 1111223333333332
Q ss_pred --CCCCc-------CeeEEecCCcCCcchhhhhh-hhhhcCCCCceEE
Q 001153 865 --LDPLL-------NIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCS 902 (1137)
Q Consensus 865 --~D~~~-------~lh~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v 902 (1137)
+|.-. -+|+...-..=++..++|.. |+-|-|++=....
T Consensus 465 RGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 465 RGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred CCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 22212 33665555557788999999 9999999744333
No 87
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.60 E-value=0.13 Score=67.67 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=65.7
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.+++|+=-. |-.|=.++|..+.. ...... ..... ......-.-..-.|||||-..|.......
T Consensus 305 ~v~fvvDR~dLd~Q~~~~f~~~~~--~~~~~~--~~~s~----~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~-------- 368 (962)
T COG0610 305 KVLFVVDRKDLDDQTSDEFQSFGK--VAFNDP--KAEST----SELKELLEDGKGKIIVTTIQKFNKAVKED-------- 368 (962)
T ss_pred eEEEEechHHHHHHHHHHHHHHHH--hhhhcc--cccCH----HHHHHHHhcCCCcEEEEEecccchhhhcc--------
Confidence 456666554 55799999999864 111111 11100 00001111114579999999988765321
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHH-HHhccCeEEEEeccCCCCChhh
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQRKLDD 643 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal-~~L~a~~RwlLTGTPiqN~l~D 643 (1137)
......-....||+||||+--.+. .++.+ ..++.-.-++.||||+...-.+
T Consensus 369 ------------~~~~~~~~~ivvI~DEaHRSQ~G~--~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 369 ------------ELELLKRKNVVVIIDEAHRSQYGE--LAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ------------cccccCCCcEEEEEechhhccccH--HHHHHHHHhccceEEEeeCCcccccccc
Confidence 012345567899999999865443 22222 3355577899999999865444
No 88
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=94.49 E-value=0.056 Score=61.83 Aligned_cols=126 Identities=12% Similarity=0.047 Sum_probs=65.7
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCC
Q 001153 707 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786 (1137)
Q Consensus 707 ~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP 786 (1137)
.++.+.++|++.|+++|+.+.......+.+.++... .....++.........+-..+.+|+.+|+||
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP 70 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETND-------------SSESIDSLLDESLVQSMELLIENLRLVANHP 70 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTT-------------T--HHHH-------HHHHHHHHHHHHHHH-G
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccC-------------ccccccchhhhhhHHHHHHHHHHHHHhccCc
Confidence 367889999999999999988765544444332100 0000000011122356667788999999999
Q ss_pred CCCCcccccccCCCCCHH----------HHHHHHHHHHHH-hhhhhcchHHHHHhHHHHHHHHHHhhhhh
Q 001153 787 QVGSSGLRSLQQSPLSMD----------EILMVLIGKTKI-EGEEALRKLVMALNGLAGIALIEKNLSQA 845 (1137)
Q Consensus 787 ~L~~~~~~~~~~~~~t~e----------elL~~Ll~~~~~-e~eea~rkvLifsq~~a~L~iLe~~l~~a 845 (1137)
+|.-.-..+.+-..+.+- .+|..|++.+.. .-.+...+++|.++....+++||..+-..
T Consensus 71 ~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk 140 (297)
T PF11496_consen 71 SLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGK 140 (297)
T ss_dssp GGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTS
T ss_pred cccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccC
Confidence 985433221111112221 255666655521 11233368899999999999999976544
No 89
>PRK09694 helicase Cas3; Provisional
Probab=94.43 E-value=0.23 Score=64.58 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=43.3
Q ss_pred CcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHH-HHHHHHhc--cCeE
Q 001153 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA-TEMALRLY--AKHR 629 (1137)
Q Consensus 553 ~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~-~kal~~L~--a~~R 629 (1137)
.+|+|+|.+.+-.-+-... ....| +..+.=..||+||+|.+-...+.. ...+..+. ....
T Consensus 411 api~V~TiDQlL~a~l~~k------h~~lR-----------~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~v 473 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVK------HRFIR-----------GFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSV 473 (878)
T ss_pred CCEEEcCHHHHHHHHHccc------hHHHH-----------HHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcE
Confidence 6899999988775431100 00000 112334589999999985444333 33333332 3568
Q ss_pred EEEeccCCCCChhhhH
Q 001153 630 WCITGTPIQRKLDDLY 645 (1137)
Q Consensus 630 wlLTGTPiqN~l~DL~ 645 (1137)
++||+|+-..-..+|.
T Consensus 474 IllSATLP~~~r~~L~ 489 (878)
T PRK09694 474 ILLSATLPATLKQKLL 489 (878)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 9999998654444443
No 90
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=94.21 E-value=0.32 Score=63.72 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=28.9
Q ss_pred hcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccCh
Q 001153 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1137)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1137)
...+|||||+|..|-.+..... ..|. ....+|+||||++...
T Consensus 414 a~~AdivItNHa~L~~~~~~~~--------------------~ilp--~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNP--------------------ELFP--SFRDLIIDEAHHLPDI 455 (850)
T ss_pred HhcCCEEEecHHHHHHHhhccc--------------------ccCC--CCCEEEEECcchHHHH
Confidence 4678999999999988752100 1122 2368999999999643
No 91
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=93.66 E-value=0.63 Score=58.54 Aligned_cols=116 Identities=17% Similarity=0.060 Sum_probs=64.9
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
..++||+|+--+. +|...+-++. ++++....|..... ........||++.|-..|.-|+-.+.-..
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~l---Glsv~~i~gg~~~~-------~r~~~y~~dIvygT~~e~~FDyLrd~~~~ 214 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEAL---GLTVGCVVEDQSPD-------ERRAAYGADITYCTNKELVFDYLRDRLAL 214 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhc---CCEEEEEeCCCCHH-------HHHHHcCCCEEEECCCchhhhhccccccc
Confidence 4689999997653 6777777776 68887776653211 12233467999999777766543222111
Q ss_pred cc--chhhh---hhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccC
Q 001153 575 EG--DRRFM---RFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1137)
Q Consensus 575 ~~--~r~~~---r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTP 636 (1137)
.+ +.... ++...+. ....+....++++|+||+..+-=. .+..-+++||.|
T Consensus 215 ~~~~~~~~~~~~~l~~~~~-~~~~~v~r~~~~aIvDEvDSiLiD-----------eartpliis~~~ 269 (656)
T PRK12898 215 GQRASDARLALESLHGRSS-RSTQLLLRGLHFAIVDEADSVLID-----------EARTPLIISAPA 269 (656)
T ss_pred cccccchhhhhhhhccccC-chhhhcccccceeEeecccceeec-----------cCCCceEEECCC
Confidence 00 00000 0000000 112234457889999999876321 244557888854
No 92
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.50 E-value=0.41 Score=61.75 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=65.1
Q ss_pred cEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 500 ~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+++||+|+.-+ .+|...+.+++ ++++....|...... .... -..|||+.|-..|.-++-.....
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l---GLsV~~i~GG~~~~e------q~~~-y~~DIVygTPgRLgfDyLrd~~~-- 204 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL---GLTTGVLVSGSPLEK------RKEI-YQCDVVYGTASEFGFDYLRDNSI-- 204 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHHH------HHHH-cCCCEEEECCChhHHHHhhCCCC--
Confidence 47899998644 46888888887 588866665432210 1111 25899999988884443211100
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1137)
......+....+..+|+|||-.+-- -.|+--+++||.+-.. .++|..+
T Consensus 205 ------------~~~~~~~vqr~~~~~IIDEADsmLi-----------DEArTPLIISg~~~~~--~~~Y~~~ 252 (970)
T PRK12899 205 ------------ATRKEEQVGRGFYFAIIDEVDSILI-----------DEARTPLIISGPGEKH--NPVYFEL 252 (970)
T ss_pred ------------CcCHHHhhcccccEEEEechhhhhh-----------hccCCceeeeCCCccc--cHHHHHH
Confidence 0000112345688999999987632 1355567888876433 4444443
No 93
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.21 E-value=0.29 Score=60.81 Aligned_cols=150 Identities=16% Similarity=0.223 Sum_probs=84.5
Q ss_pred cCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccce------eEEEecccccccC-------hhHHH
Q 001153 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW------WRICLDEAQMVES-------NAAAA 617 (1137)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w------~rVILDEAH~IKN-------~~S~~ 617 (1137)
-+-.|+..||..|-.+... .+.+...|+. +-++| .+||+||.|+.|| ..|++
T Consensus 367 ~krGViFaTYtaLIGEs~~-----~~~kyrtR~r----------QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKt 431 (1300)
T KOG1513|consen 367 TKRGVIFATYTALIGESQG-----KGGKYRTRFR----------QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKT 431 (1300)
T ss_pred ccceeEEEeeHhhhhhccc-----cCchHHHHHH----------HHHHHhhhccceeEEehhhhhhcccccccCCCcCcc
Confidence 3567999999999887532 1111111111 11223 3789999999999 33677
Q ss_pred HHHHHHh----ccCeEEEEeccCCCCChhhhHhhhhhccCCCCCc------hhhhhhhhcCCCCCCCcchHHH--HHHHH
Q 001153 618 TEMALRL----YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI------SRWWIEVIRDPYENGDVGAMEF--THKFF 685 (1137)
Q Consensus 618 ~kal~~L----~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~------~~~F~~~~~~pi~~~~~~~~~~--L~~lL 685 (1137)
.+++..| +--+.+--|+|-. .|=-++....+.+.||. +..|...+ ++....+++- +--.+
T Consensus 432 G~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF~eFi~Av----EkRGvGAMEIVAMDMK~ 503 (1300)
T KOG1513|consen 432 GKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEFEEFIHAV----EKRGVGAMEIVAMDMKL 503 (1300)
T ss_pred cHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCccHHHHHHHH----HhcCCceeeeeehhhhh
Confidence 7777665 3444555666643 22233334444555543 33333332 3333333221 11123
Q ss_pred hhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 001153 686 KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1137)
Q Consensus 686 ~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1137)
+...+-| +|..-.....+-.|+||++=++.|+...+-.
T Consensus 504 rGmYiAR-------QLSFkgVsFrieEv~ls~eF~k~Yn~a~~LW 541 (1300)
T KOG1513|consen 504 RGMYIAR-------QLSFKGVSFRIEEVPLSKEFRKVYNRAAELW 541 (1300)
T ss_pred hhhhhhh-------hccccCceEEEEecccCHHHHHHHHHHHHHH
Confidence 3333322 4567777888999999999999999765443
No 94
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.99 E-value=0.57 Score=57.87 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=72.5
Q ss_pred EEEEeCCc-hhHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhc-CCcEEEEehHHHhhhcccCCCCCccc
Q 001153 501 TLIVCPAP-ILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 501 tLIV~P~S-Ll~QW~~EI~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.||++|.- |..|=.+++.++.... .+++..+.|...... ....+. ..||||.|-..+...+...
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~------q~~~l~~~~~ivVaTPGRllD~i~~~------- 168 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK------QIEALKRGVDIVVATPGRLLDLIKRG------- 168 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH------HHHHHhcCCCEEEECccHHHHHHHcC-------
Confidence 99999996 6679999998887643 577766666533211 223333 3999999999988654321
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhcc-CeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a-~~RwlLTGTPi 637 (1137)
.|.--.-..+|+|||-++-+.. ..+...+..++. ...++.|+|--
T Consensus 169 ---------------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~ 216 (513)
T COG0513 169 ---------------KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMP 216 (513)
T ss_pred ---------------CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCC
Confidence 1333345689999999987653 444555555654 55677888853
No 95
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.92 E-value=0.51 Score=60.79 Aligned_cols=131 Identities=15% Similarity=0.017 Sum_probs=65.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
...+.|.|. +++.+=.+.+..++..+......+||.......... .. ..-+.++++++.....-..... ..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~----~~--~~~~~~~~~ds~~~~~~~~~~~--~~ 318 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEP----DQ--DILLTLTTNDSYKKLLLALIVV--TP 318 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhcc----cc--ccceeEEecccccceecccccc--CH
Confidence 467777775 466788888887765222222213554332211100 00 1125566666555433211100 00
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh-hH-HHHHHHHHhc--cCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-AATEMALRLY--AKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-~S-~~~kal~~L~--a~~RwlLTGTPiq 638 (1137)
-........+...+. +..+.-..||+||+|.+-.. .+ ....++..+. ....+++|||+-+
T Consensus 319 ~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 319 IQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHhhhhhccccchHH-HHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 000111111222223 66677789999999998766 32 3333334443 6778999999853
No 96
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.76 E-value=0.48 Score=55.01 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=79.5
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
..||++|.- |-.|-...++.....-++++.+.-|..... ........+.+|+|.|-+.|...+......
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~-----~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf----- 200 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM-----LQANQLSKKPHILVATPGRLWDHLENTKGF----- 200 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH-----HHHHHhhcCCCEEEeCcHHHHHHHHhccCc-----
Confidence 479999987 556888888887655578999888875432 112334467889999999999876421110
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhccCeE-EEEeccCCCCChhhh
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHR-WCITGTPIQRKLDDL 644 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a~~R-wlLTGTPiqN~l~DL 644 (1137)
.|. .-..+|+|||.++-|.+ -..-+.++.++.+++ ++.|+| +..++..|
T Consensus 201 --------------~le--~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsAT-Mt~kv~kL 252 (476)
T KOG0330|consen 201 --------------SLE--QLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSAT-MTKKVRKL 252 (476)
T ss_pred --------------cHH--HhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEee-cchhhHHH
Confidence 122 23468999999998876 566777888877665 555666 44444443
No 97
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=92.58 E-value=0.43 Score=61.89 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=57.7
Q ss_pred CcEEEEeCCchh-HHHHHHHHhcCCC-CCCeEEE-EcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~EI~k~~~~-g~L~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+.++|+.|.-++ .|-.+.+.+.... -+..|-. +.+... ...+..|+++|.+.|.+.+...
T Consensus 46 ~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~------------~s~~t~I~v~T~G~Llr~l~~d----- 108 (819)
T TIGR01970 46 GKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK------------VSRRTRLEVVTEGILTRMIQDD----- 108 (819)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc------------cCCCCcEEEECCcHHHHHHhhC-----
Confidence 368999998754 4555555433321 0122211 111111 1123579999999988765321
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEeccccc-ccChhH--HHHHHH-HHhcc-CeEEEEeccCCCCChhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAA--AATEMA-LRLYA-KHRWCITGTPIQRKLDD 643 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~-IKN~~S--~~~kal-~~L~a-~~RwlLTGTPiqN~l~D 643 (1137)
..| -.+..||+||+|. .-+..- ...+.+ ..++. ...+++|+|.-...+.+
T Consensus 109 ----------------~~L--~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~ 163 (819)
T TIGR01970 109 ----------------PEL--DGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSS 163 (819)
T ss_pred ----------------ccc--ccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHH
Confidence 012 2467999999994 444321 112222 23433 35688999976544433
No 98
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=91.81 E-value=0.057 Score=44.90 Aligned_cols=30 Identities=40% Similarity=1.035 Sum_probs=24.1
Q ss_pred hcccccccccccccccccccccccccccccCcCC
Q 001153 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1137)
Q Consensus 417 ~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~ 450 (1137)
+|+. ....+.+|+|+.|+.|.|..|++...
T Consensus 4 vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 4 VCGQ----SDDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp TTTS----SCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred CCCC----cCCCCCeEEcCCCChhhCcccCCCCh
Confidence 5666 23467899999999999999997654
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=91.62 E-value=0.73 Score=59.88 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=58.3
Q ss_pred CcEEEEeCCchh-HHHHHHHHhcCCC-CCCeEEEE-cCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIY-EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~EI~k~~~~-g~L~V~vy-~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+..||++|.-++ .|-.+.+.+.... -+..|... .|.... -....|++.|.+.|.+.+...
T Consensus 49 ~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------------~~~t~I~v~T~G~Llr~l~~d----- 111 (812)
T PRK11664 49 GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------------GPNTRLEVVTEGILTRMIQRD----- 111 (812)
T ss_pred CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------------CCCCcEEEEChhHHHHHHhhC-----
Confidence 468999998765 4555555443321 02223221 121111 122468999999988755321
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEeccccc-ccChhHH---HHHHHHHhcc-CeEEEEeccCCCCChhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAAA---ATEMALRLYA-KHRWCITGTPIQRKLDD 643 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~-IKN~~S~---~~kal~~L~a-~~RwlLTGTPiqN~l~D 643 (1137)
..--.+..||+||+|. .-+..-. ..+....++. ...+++|+|.-...+.+
T Consensus 112 ------------------~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~ 166 (812)
T PRK11664 112 ------------------PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQ 166 (812)
T ss_pred ------------------CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHH
Confidence 1123567999999996 2222211 1122223433 35689999986544433
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.55 E-value=0.4 Score=61.58 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=59.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCC-CeEEE-EcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGS-LKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~-L~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+..+||+|++ |+.|=.+-|.++....+ +++.+ ||+.-....+ ......-...+|||+|||-..|.+.++
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ek-ee~le~i~~gdfdIlitTs~FL~k~~e------- 197 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEK-EEALERIESGDFDILITTSQFLSKRFE------- 197 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHH-HHHHHHHhcCCccEEEEeHHHHHhhHH-------
Confidence 6789999986 66899999999985333 55544 8987332110 011122334579999999999998763
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEeccccc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM 609 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~ 609 (1137)
.|.+.+|+.|++|-+..
T Consensus 198 -----------------~L~~~kFdfifVDDVDA 214 (1187)
T COG1110 198 -----------------ELSKLKFDFIFVDDVDA 214 (1187)
T ss_pred -----------------HhcccCCCEEEEccHHH
Confidence 46678899999998775
No 101
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.11 E-value=1.8 Score=51.95 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCCcEEEEeCCch----hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCC
Q 001153 497 ATGATLIVCPAPI----LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1137)
Q Consensus 497 ~~~~tLIV~P~SL----l~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1137)
++-++||+||.-= +++-...|..|+ ++.|...-|.-..+. ....--...||||.|.+.|-.++.....
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~-----QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKA-----QEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHH-----HHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 4568999999863 356677788888 688888777533221 1122235689999999999887653221
Q ss_pred CCccchhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHHHhcc--CeEEEEeccCCCCChhhhHhh
Q 001153 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYA--KHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 573 ~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~~L~a--~~RwlLTGTPiqN~l~DL~sL 647 (1137)
+.--.-..+|+|||.++-... .-..+-+..+.+ +-.++.|+| +...+.||-++
T Consensus 323 ---------------------f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSAT-MteeVkdL~sl 378 (691)
T KOG0338|consen 323 ---------------------FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSAT-MTEEVKDLASL 378 (691)
T ss_pred ---------------------ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhh-hHHHHHHHHHh
Confidence 222234579999999864322 222333334433 445888988 45567777765
No 102
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=90.92 E-value=0.53 Score=57.81 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcc
Q 001153 498 TGATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNS 537 (1137)
Q Consensus 498 ~~~tLIV~P~SL-l~QW~~EI~k~~~~g~L~V~vy~G~~~~ 537 (1137)
.+|+||++|+++ ++|-...|.+- +|+|+.....+++
T Consensus 454 ~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 454 AGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred CCceEEEcccchhHHHHHHHHHhc----CceEeeeehhhhh
Confidence 379999999986 68998888874 6898877765443
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=90.90 E-value=0.72 Score=59.54 Aligned_cols=101 Identities=21% Similarity=0.143 Sum_probs=61.3
Q ss_pred cEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 500 ~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.++||+|+--+ .+|...+.+++ ++++.+..|..... .....-..||++.|-..|.-++-.+...
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l---GLtv~~i~gg~~~~-------~r~~~y~~dIvygT~grlgfDyLrd~~~-- 192 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL---GLTVGVIYPDMSHK-------EKQEAYKADIVYGTNNEYGFDYLRDNMA-- 192 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc---CceEEEEeCCCCHH-------HHHHHhCCCEEEECChhhhHHHHhcCCc--
Confidence 58899998754 35888888887 58888777653221 1122235899999998874443211100
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccC
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTP 636 (1137)
+ .......-...++|+|||+.+--. .|+--+++||.+
T Consensus 193 -----------~--~~~~~v~r~l~~~IvDEaDsiLID-----------eArtPLIISg~~ 229 (896)
T PRK13104 193 -----------F--SLTDKVQRELNFAIVDEVDSILID-----------EARTPLIISGAA 229 (896)
T ss_pred -----------c--chHhhhccccceEEeccHhhhhhh-----------ccCCceeeeCCC
Confidence 0 001122346789999999986322 244557788754
No 104
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=90.83 E-value=0.72 Score=58.78 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCc
Q 001153 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1137)
Q Consensus 511 ~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~ 590 (1137)
.|=-++|+..+. +.. +..|.- .-..++..+|+|-+.|++-+....+
T Consensus 354 NQKfRDFk~tF~--Dvg--LlTGDv------------qinPeAsCLIMTTEILRsMLYrgad------------------ 399 (1248)
T KOG0947|consen 354 NQKFRDFKETFG--DVG--LLTGDV------------QINPEASCLIMTTEILRSMLYRGAD------------------ 399 (1248)
T ss_pred cchHHHHHHhcc--ccc--eeecce------------eeCCCcceEeehHHHHHHHHhcccc------------------
Confidence 344566666554 222 566643 2335678999999999997653221
Q ss_pred chhccccceeEEEecccccccChh-HHHHHHHH-Hhc-cCeEEEEecc
Q 001153 591 PTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLY-AKHRWCITGT 635 (1137)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~-~L~-a~~RwlLTGT 635 (1137)
.+..+. .||+||.|+|-+.. .-.+.-+- .|+ -..-++||+|
T Consensus 400 --liRDvE--~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 400 --LIRDVE--FVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred --hhhccc--eEEEeeeeecccccccccceeeeeeccccceEEEEecc
Confidence 244444 59999999997643 22232222 222 2345667777
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=90.75 E-value=3.3 Score=47.75 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=26.4
Q ss_pred ceeEEEecccccccCh-hHHHHHHHHHh--ccCeEEEEeccCCC
Q 001153 598 FWWRICLDEAQMVESN-AAAATEMALRL--YAKHRWCITGTPIQ 638 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~-~S~~~kal~~L--~a~~RwlLTGTPiq 638 (1137)
.||.+|+||....-=. +-.+..+++.- .....+.||+||-.
T Consensus 202 aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 202 AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 5899999999875321 12233344432 34568999999963
No 106
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.62 E-value=0.95 Score=54.49 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=60.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
...||++|+. |+.|=.+|.+|+.-...++..+.+|....+.. ...--..+||+++|-..|..-+..-
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q-----~~~~~~gcdIlvaTpGrL~d~~e~g------- 220 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ-----LRFIKRGCDILVATPGRLKDLIERG------- 220 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh-----hhhhccCccEEEecCchhhhhhhcc-------
Confidence 4689999986 88999999999987667777766665433211 2233467999999999988754310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEeccccccc
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IK 611 (1137)
+ -.|..+. ++|||||.++-
T Consensus 221 --------~-----i~l~~~k--~~vLDEADrMl 239 (482)
T KOG0335|consen 221 --------K-----ISLDNCK--FLVLDEADRML 239 (482)
T ss_pred --------e-----eehhhCc--EEEecchHHhh
Confidence 0 1244444 89999999764
No 107
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=90.19 E-value=0.48 Score=58.63 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.|.||||.|. ||+..=.+.+... ++++...+..-... ..............+++..+-+.+....-
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~-e~~~v~~~l~~g~~klLyisPErl~~~~f-------- 123 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSRE-ERQQVLNQLKSGQLKLLYISPERLMSPRF-------- 123 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHH-HHHHHHHHHhcCceeEEEECchhhcChHH--------
Confidence 5899999996 6776556666653 46666655542211 00111122233458999999999887521
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-------S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1137)
-..|....-.++++||||.|-... .........++-.-+++||+|--+.-..|+-..|.
T Consensus 124 --------------~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 124 --------------LELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred --------------HHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 124567788899999999986542 33333334445557999999988888889888887
Q ss_pred hccCC
Q 001153 650 FLKSS 654 (1137)
Q Consensus 650 FL~p~ 654 (1137)
.=.+.
T Consensus 190 l~~~~ 194 (590)
T COG0514 190 LQDAN 194 (590)
T ss_pred CCCcc
Confidence 66553
No 108
>PRK10536 hypothetical protein; Provisional
Probab=89.56 E-value=2.1 Score=48.17 Aligned_cols=41 Identities=29% Similarity=0.187 Sum_probs=33.3
Q ss_pred eeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCCh
Q 001153 599 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 641 (1137)
Q Consensus 599 w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l 641 (1137)
-..||+||||++.- ......+.++....+++++|-|-|..+
T Consensus 177 ~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 177 NAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 36899999999864 455566778889999999999987654
No 109
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=87.62 E-value=1.6 Score=55.46 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=64.5
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcC-----CCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhc--
Q 001153 499 GATLIVCPAPILA----QWDAEITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDL-- 567 (1137)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~EI~k~~-----~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~-- 567 (1137)
..++||||+.-+. .=-+++..|+ ..-.+..++|....... ....-....|+|.+.+.+.++-
T Consensus 105 ~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~-------~~~~~~~~~vLl~~~~Afnk~~in 177 (985)
T COG3587 105 FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF-------KFKSNNKPCVLLIFVSAFNKEEIN 177 (985)
T ss_pred eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH-------hhccCCCceEEEEehhhhcccccc
Confidence 4789999975442 2233444444 22356677775221110 1122233458888888887762
Q ss_pred -ccCCCCCccchhhhhhcccCCCcchh---ccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEecc
Q 001153 568 -SHDSDRHEGDRRFMRFQKRYPVIPTL---LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 635 (1137)
Q Consensus 568 -~~~~~~~~~~r~~~r~~kr~~~~~s~---L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGT 635 (1137)
...+.. .+.....+.-..+| |...+ -.||+||-|++... .+++.++..|+.-.-+=-.+|
T Consensus 178 an~iN~~------s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 178 ANMINSE------SMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred ccccchh------hhcccCccccccCHHHHHHhcC-CEEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 111100 00000000000011 22222 36999999999865 788999999988776666666
No 110
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=87.35 E-value=1.5 Score=56.73 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=62.8
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+.+-||+|+-.+. +|...+-+++ +++|-...+..... .....-.+||+..|...+.-|+-.+.-..
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~l---Gl~v~~i~~~~~~~-------err~~Y~~dI~YGT~~e~gFDYLrD~~~~ 193 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFL---GLSVGIVTPFQPPE-------EKRAAYAADITYGTNNEFGFDYLRDNMAF 193 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhccc---CCEEEEECCCCCHH-------HHHHHhcCCEEEEcccccccchhhcccee
Confidence 4678899988763 6777777776 68988887653321 12233448999999888744321110000
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccC
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTP 636 (1137)
.........+.++|+||+|.|-=. .|+.-+++||.+
T Consensus 194 ---------------~~~~~vqr~l~~aIVDEvDsiLID-----------EArtPLIISg~~ 229 (913)
T PRK13103 194 ---------------SLDDKFQRELNFAVIDEVDSILID-----------EARTPLIISGQA 229 (913)
T ss_pred ---------------chhhhcccccceeEechhhheecc-----------ccCCceeecCCC
Confidence 001234457889999999987422 234457787753
No 111
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=86.72 E-value=3.9 Score=55.29 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=39.5
Q ss_pred CCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccc-cccChhHHHHHHHHHh----cc
Q 001153 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAATEMALRL----YA 626 (1137)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH-~IKN~~S~~~kal~~L----~a 626 (1137)
...|+++|.+.|..++... ++ --.+..||||||| +.-|..-... .++.+ +.
T Consensus 163 ~t~I~v~TpG~LL~~l~~d----------------------~~-Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpd 218 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQD----------------------RL-LMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPD 218 (1294)
T ss_pred CCCEEEEChHHHHHHHhcC----------------------Cc-cccCcEEEecCccccccccchHHH-HHHHhhhcCCC
Confidence 4679999999999876321 11 2356799999999 4555443222 23332 22
Q ss_pred CeEEEEeccC
Q 001153 627 KHRWCITGTP 636 (1137)
Q Consensus 627 ~~RwlLTGTP 636 (1137)
...+++|+|.
T Consensus 219 lKvILmSATi 228 (1294)
T PRK11131 219 LKVIITSATI 228 (1294)
T ss_pred ceEEEeeCCC
Confidence 4678999997
No 112
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=86.26 E-value=1.9 Score=52.33 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=74.3
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
..|||.|.- |-.|=-.-+.+......+..-..-|..... .....+...+|+|+|-+.|..+++...
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k------~E~eRi~~mNILVCTPGRLLQHmde~~------- 209 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK------FELERISQMNILVCTPGRLLQHMDENP------- 209 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH------HHHHhhhcCCeEEechHHHHHHhhhcC-------
Confidence 579999986 445655555443221244444444443322 244566788999999999998775321
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChh-H-HHHHHHHHhc-cCeEEEEeccCCCCChhhhHhh
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-A-AATEMALRLY-AKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S-~~~kal~~L~-a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
.|..-.-.++|||||.++-... . ..-..+..|+ .+-.++.|+||.. ++.||--|
T Consensus 210 --------------~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~-svkdLaRL 266 (758)
T KOG0343|consen 210 --------------NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTK-SVKDLARL 266 (758)
T ss_pred --------------CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccch-hHHHHHHh
Confidence 1333455689999999975543 2 2333344564 4567999999964 56666443
No 113
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=86.02 E-value=4.1 Score=53.60 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=41.4
Q ss_pred hcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHHH-hc-c
Q 001153 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALR-LY-A 626 (1137)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~~-L~-a 626 (1137)
..++.+++.|-+.|++-+...+ ..+..+ ..||+||.|.|.... .-.++-+-. ++ .
T Consensus 203 N~~A~clvMTTEILRnMlyrg~--------------------~~~~~i--~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 203 NPDAPCLVMTTEILRNMLYRGS--------------------ESLRDI--EWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred CCCCceEEeeHHHHHHHhccCc--------------------cccccc--ceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 3567788888899998764211 123333 469999999998765 334443333 33 3
Q ss_pred CeEEEEecc
Q 001153 627 KHRWCITGT 635 (1137)
Q Consensus 627 ~~RwlLTGT 635 (1137)
..-++||+|
T Consensus 261 v~~v~LSAT 269 (1041)
T COG4581 261 VRFVFLSAT 269 (1041)
T ss_pred CcEEEEeCC
Confidence 477889999
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=85.93 E-value=3.3 Score=53.62 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=67.9
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+.+.||+|+--+ ..|...+-+|. +++|-...|..... .....-.+||+..|-..|.-++-.+.-.
T Consensus 124 ~~VhIvT~ndyLA~RD~e~m~~l~~~l---Glsv~~i~~~~~~~-------~r~~~Y~~dI~YgT~~e~gfDyLrdnm~- 192 (908)
T PRK13107 124 KGVHVITVNDYLARRDAENNRPLFEFL---GLTVGINVAGLGQQ-------EKKAAYNADITYGTNNEFGFDYLRDNMA- 192 (908)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEecCCCCHH-------HHHhcCCCCeEEeCCCcccchhhhccCc-
Confidence 458999998754 47999999997 68887665542210 1122225789999877765443211100
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1137)
..+..+....+..+|+||+..+--.. |+.-+++||.+ ... .++|..+.
T Consensus 193 --------------~~~~~~vqr~~~~aIvDEvDsiLiDE-----------ArtPLIISg~~-~~~-~~~y~~~~ 240 (908)
T PRK13107 193 --------------FSPQERVQRPLHYALIDEVDSILIDE-----------ARTPLIISGAA-EDS-SELYIKIN 240 (908)
T ss_pred --------------cchhhhhccccceeeecchhhhcccc-----------CCCceeecCCC-ccc-hHHHHHHH
Confidence 00112344567899999998764332 44567888854 333 45555433
No 115
>PRK04296 thymidine kinase; Provisional
Probab=85.92 E-value=4.3 Score=43.37 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=22.9
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEecc
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGT 635 (1137)
.++.||+||+|.+.. .+....+..+ +....+++||-
T Consensus 78 ~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 578999999999843 2344444443 34456667654
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=85.14 E-value=0.46 Score=46.18 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=50.0
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhh---hhHHHHH--HHHHHHHHhhhcCCCCcC----------------eeEEecCCcC
Q 001153 822 LRKLVMALNGLAGIALIEKNLSQA---VSLYKEA--MAVVEEHSEDFRLDPLLN----------------IHLHHNLTEI 880 (1137)
Q Consensus 822 ~rkvLifsq~~a~L~iLe~~l~~a---~~~y~~~--l~~~~~~~~~f~~D~~~~----------------lh~~~Nl~dw 880 (1137)
..++|+|++.......+.+.+... ...+.+. ...+....+.|+.+...- -|+.+--.+|
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~ 107 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW 107 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC
Confidence 367888888888877777776542 1112111 123444555555444211 1333333479
Q ss_pred Ccchhhhhh-hhhhcCCCCceEE
Q 001153 881 LPMVANCAT-ELSQNEQHFPGCS 902 (1137)
Q Consensus 881 np~~d~QA~-r~~riGQ~~~v~v 902 (1137)
++....|+. ||+|.||+..|.+
T Consensus 108 ~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 108 SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CHHHheecccccccCCCCceEEe
Confidence 999999999 9999999776654
No 117
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=84.05 E-value=5 Score=52.99 Aligned_cols=115 Identities=11% Similarity=0.202 Sum_probs=69.1
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHH---HhhhcccCCCCC
Q 001153 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDV---LKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYet---L~~d~~~~~~~~ 574 (1137)
....-|+| .+|+..|...|.++..+=+++|.-..|.... ....+....|+++|-+. +.+.
T Consensus 365 fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l--------~~~qieeTqVIV~TPEK~DiITRk-------- 428 (1674)
T KOG0951|consen 365 FKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL--------GKEQIEETQVIVTTPEKWDIITRK-------- 428 (1674)
T ss_pred ceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc--------hhhhhhcceeEEeccchhhhhhcc--------
Confidence 35566777 5899999999999988556666667776543 33455566788887543 3332
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccc---cChh--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhH
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV---ESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLY 645 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~I---KN~~--S~~~kal~~L~----a~~RwlLTGTPiqN~l~DL~ 645 (1137)
.+++.. . --...+|+||.|++ +.+. |-.++..++.. ..+-..||+|- + |.+|.-
T Consensus 429 ~gdraY-------------~--qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATL-P-Ny~DV~ 491 (1674)
T KOG0951|consen 429 SGDRAY-------------E--QLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATL-P-NYEDVA 491 (1674)
T ss_pred cCchhH-------------H--HHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccC-C-chhhhH
Confidence 122211 0 01346899999999 3332 33444444442 34457899994 3 345554
Q ss_pred h
Q 001153 646 G 646 (1137)
Q Consensus 646 s 646 (1137)
+
T Consensus 492 ~ 492 (1674)
T KOG0951|consen 492 S 492 (1674)
T ss_pred H
Confidence 4
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=83.85 E-value=2.9 Score=53.98 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=65.2
Q ss_pred cEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 500 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 500 ~tLIV~P~SLl~----QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.+-||+|+..+. +|...+-+++ ++++.+..|..... .....-..||++.|...|.-++-.+....
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L---Glsv~~i~~~~~~~-------er~~~y~~dI~ygT~~elgfDyLrd~~~~- 192 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL---GLSVGVILSGMSPE-------ERREAYAADITYGTNNEFGFDYLRDNMVF- 192 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc---CCeEEEEcCCCCHH-------HHHHhcCCCeEEECCcchhhhhhhccccc-
Confidence 355999998663 5877787777 68888877753321 11122348999999888865542111100
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1137)
....+..-.+.++|+|||..+-=. .|+.-+++||.+-. ..++|..+
T Consensus 193 --------------~~~~~~~r~~~~aIvDEaDsiLID-----------eArtpLiiSg~~~~--~~~~y~~~ 238 (830)
T PRK12904 193 --------------SLEERVQRGLNYAIVDEVDSILID-----------EARTPLIISGPAED--SSELYKRA 238 (830)
T ss_pred --------------chhhhcccccceEEEechhhheec-----------cCCCceeeECCCCc--ccHHHHHH
Confidence 011234456788999999876322 24445777776532 23455443
No 120
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.70 E-value=4.1 Score=47.80 Aligned_cols=109 Identities=18% Similarity=0.317 Sum_probs=74.9
Q ss_pred CCcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh-cCCcEEEEehHHHhhhcccCCCCCc
Q 001153 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+-.+||..|.. |..|=+-|..+..-.+...+++|.|..+.. ...++ ...+++|.|-..|..-...
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-------qie~lkrgveiiiatPgrlndL~~~------ 360 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-------QIEDLKRGVEIIIATPGRLNDLQMD------ 360 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-------HHHHHhcCceEEeeCCchHhhhhhc------
Confidence 34689999986 556888999888777778889998876542 33333 4689999998887654211
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhccCeEEEEecc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGT 635 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~a~~RwlLTGT 635 (1137)
....--.--++|||||.++-.. .-+..+.+..++.++-.+||..
T Consensus 361 ----------------n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 361 ----------------NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA 406 (629)
T ss_pred ----------------CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence 0111223458999999987554 3677777778887776666643
No 121
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=83.19 E-value=4 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=18.6
Q ss_pred cceeecCCCccHHHHHHHHHHHh
Q 001153 359 GGILADEMGLGKTVELLACIFAH 381 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~ 381 (1137)
.|+|-+-.|.|||+-.|+-.++-
T Consensus 42 ~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 42 NGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred hhhccCCCCCCccHHHHHHHHHH
Confidence 47888899999999988765554
No 122
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.42 E-value=1 Score=47.25 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=29.0
Q ss_pred hhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhc-cccceeEEEecccccccCh
Q 001153 547 ISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESN 613 (1137)
Q Consensus 547 ~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~IKN~ 613 (1137)
......+||||++|..|-..... .... ....-..||+||||+|.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~---------------------~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIR---------------------KSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHH---------------------HHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHH---------------------hhhccccccCcEEEEecccchHHH
Confidence 34456799999999998875310 0011 2234468999999999754
No 123
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=81.14 E-value=6.6 Score=46.11 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.6
Q ss_pred ccceeEEEecccccccC
Q 001153 596 RIFWWRICLDEAQMVES 612 (1137)
Q Consensus 596 ~i~w~rVILDEAH~IKN 612 (1137)
.-.++.||+||||++..
T Consensus 81 ~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRT 97 (352)
T ss_pred CCcCCEEEEehhHhhhh
Confidence 34689999999999986
No 124
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=80.15 E-value=6.5 Score=53.29 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=38.5
Q ss_pred CCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccc-cccChhHHHH--HHHHHh-ccC
Q 001153 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAAT--EMALRL-YAK 627 (1137)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH-~IKN~~S~~~--kal~~L-~a~ 627 (1137)
+..|+++|.+.|.+.+..+ ..| -.++.||+||+| +.-|..-... +.+... +.-
T Consensus 156 ~T~I~~~TdGiLLr~l~~d---------------------~~L--~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQD---------------------RFL--SRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred CceeeeccccHHHHHhhhC---------------------ccc--ccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 4569999999998876321 012 246799999999 4555443221 222212 234
Q ss_pred eEEEEeccC
Q 001153 628 HRWCITGTP 636 (1137)
Q Consensus 628 ~RwlLTGTP 636 (1137)
..+++|+|.
T Consensus 213 KlIlmSATl 221 (1283)
T TIGR01967 213 KIIITSATI 221 (1283)
T ss_pred eEEEEeCCc
Confidence 578999997
No 125
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=79.77 E-value=6.2 Score=48.67 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=25.3
Q ss_pred ccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
+.+..|+.||+|||-..--+ +.+-. +-...+++|.|-|.|
T Consensus 354 ~~~~~fD~vIIDEaaQamE~--~cWip---vlk~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 354 LRKRTFDLVIIDEAAQAMEP--QCWIP---VLKGKKFILAGDPKQ 393 (649)
T ss_pred hcccCCCEEEEehhhhhccc--hhhhH---HhcCCceEEeCCccc
Confidence 44567999999998543222 12222 223349999999987
No 126
>PRK14873 primosome assembly protein PriA; Provisional
Probab=79.07 E-value=6.7 Score=50.01 Aligned_cols=107 Identities=7% Similarity=-0.082 Sum_probs=65.2
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+||++|. ++..|+..-|...++ .-.+.+||..-......... ......+.+|||=|+..+-.
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w-~~~~~G~~~IViGtRSAvFa------------ 253 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW-LAVLRGQARVVVGTRSAVFA------------ 253 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH-HHHhCCCCcEEEEcceeEEe------------
Confidence 579999997 688999999999985 46788898764322110000 11223557799877765433
Q ss_pred hhhhhhcccCCCcchhccccceeEEEeccccc--ccChhHHHH--HHH----HHhccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMA----LRLYAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~--IKN~~S~~~--kal----~~L~a~~RwlLTGTPi 637 (1137)
|+. +...||+||=|- .|...+..+ +-+ ..+..-.-++-|+||-
T Consensus 254 ---------------P~~--~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 254 ---------------PVE--DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred ---------------ccC--CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 232 346899999885 554432221 111 1233445667799994
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=78.13 E-value=7.5 Score=49.48 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=63.4
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+.+-||+|+..+. +|...+-+++ +++|....+..... .....-.+||+-+|-..+.-++-.+.-..
T Consensus 120 ~~VhvvT~NdyLA~RDae~m~~ly~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 189 (764)
T PRK12326 120 RRVHVITVNDYLARRDAEWMGPLYEAL---GLTVGWITEESTPE-------ERRAAYACDVTYASVNEIGFDVLRDQLVT 189 (764)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHhc---CCEEEEECCCCCHH-------HHHHHHcCCCEEcCCcccccccchhhhcc
Confidence 5788999998773 6888888887 68998877653321 22334467887776665554432111000
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCC
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPi 637 (1137)
.+.......++.+|+||+..|-=. .++.-+++||.+-
T Consensus 190 ---------------~~~~~v~R~~~faIVDEvDSiLID-----------eArtPLiISg~~~ 226 (764)
T PRK12326 190 ---------------DVADLVSPNPDVAIIDEADSVLVD-----------EALVPLVLAGSTP 226 (764)
T ss_pred ---------------ChHhhcCCccceeeecchhhheec-----------cccCceeeeCCCc
Confidence 011234456889999999865321 3566788888653
No 128
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=77.83 E-value=19 Score=45.96 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=27.9
Q ss_pred hccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
.|....|+.||+|||-.+..+.+ +-.|....+++|-|=|.|
T Consensus 356 ~l~~~~Fd~vIIDEAsQ~~ep~~-----lipl~~~~~~vLvGD~~Q 396 (637)
T TIGR00376 356 GLKGWEFDVAVIDEASQAMEPSC-----LIPLLKARKLILAGDHKQ 396 (637)
T ss_pred hhccCCCCEEEEECccccchHHH-----HHHHhhCCeEEEecChhh
Confidence 46678999999999966654432 222222348899898877
No 129
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=74.31 E-value=1.5 Score=54.09 Aligned_cols=36 Identities=42% Similarity=0.912 Sum_probs=30.8
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCC
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~ 450 (1137)
....|+|+..... .|..++|+.|..|+|..|+|.-.
T Consensus 85 ~~~~c~c~~~~~~---~g~~i~c~~c~~Wqh~~C~g~~~ 120 (508)
T KOG1844|consen 85 EISRCDCGLEDDM---EGLMIQCDWCGRWQHKICCGSFK 120 (508)
T ss_pred cccccccccccCC---CceeeCCcccCcccCceeeeecC
Confidence 4578999998776 68899999999999999997654
No 130
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=73.52 E-value=9.6 Score=46.78 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+..|.++|.- |-.|=..+|.+-..+=.+++-+--|..+.+.... ........++|||+-||+-+---+..-
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~-pv~~~t~~dADIIVGTYEGiD~lLRtg------ 333 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE-PVVVDTSPDADIIVGTYEGIDYLLRTG------ 333 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC-ccccCCCCCCcEEEeechhHHHHHHcC------
Confidence 47899999986 4457777887766555677877777755432211 123455678999999999764332110
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh----ccCeEEEEeccCCCCChhhhHhhhh
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL----YAKHRWCITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L----~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1137)
+ .|. +-..||+||.|++.... ...--.+.+| +.-..+.||+|= .|+.||-..|.
T Consensus 334 --------~-------~lg--diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~ 393 (830)
T COG1202 334 --------K-------DLG--DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLG 393 (830)
T ss_pred --------C-------ccc--ccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhC
Confidence 0 122 34589999999998632 3333333343 334568899993 56777766543
No 131
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.74 E-value=12 Score=45.49 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=56.4
Q ss_pred EEEEeCCc-hhHHHHHHHHhcCCCCCCeE--EEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKT--CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 501 tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V--~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.|||||.- |..|=.+-+.+...+-..-| ++.-|.++... ...--...+|+|-|-+.|...+.+....
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSE------KARLRKGiNILIgTPGRLvDHLknT~~i---- 283 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSE------KARLRKGINILIGTPGRLVDHLKNTKSI---- 283 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccH------HHHHhcCceEEEcCchHHHHHHhccchh----
Confidence 69999986 77788888888765321111 22334333221 1112245789999999998876542211
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh-----hHHHHHHHHH
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-----AAAATEMALR 623 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-----~S~~~kal~~ 623 (1137)
.+.++ ..||+|||.+|-.- -+++.+++..
T Consensus 284 ---------------~~s~L--RwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 284 ---------------KFSRL--RWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred ---------------eeeee--eEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 13333 35899999997432 2555555533
No 132
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=72.52 E-value=2.4 Score=48.42 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=29.7
Q ss_pred hhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccC
Q 001153 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1137)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN 612 (1137)
.....+||||++|..|-.+... .. .-....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r---------~~------------~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 207 KAIEFANVVVLPYQYLLDPKIR---------QA------------LSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHH---------HH------------hcccccccEEEEeCccChHH
Confidence 4457899999999999865311 00 00012357899999999964
No 133
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=72.52 E-value=2.4 Score=48.42 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=29.7
Q ss_pred hhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccC
Q 001153 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1137)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN 612 (1137)
.....+||||++|..|-.+... .. .-....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r---------~~------------~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 207 KAIEFANVVVLPYQYLLDPKIR---------QA------------LSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHH---------HH------------hcccccccEEEEeCccChHH
Confidence 4457899999999999865311 00 00012357899999999964
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=71.36 E-value=6 Score=48.15 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.7
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEE
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCI 530 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~v 530 (1137)
+||||++|+ +|..|-..||+.|+|......+|
T Consensus 58 rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFV 90 (663)
T COG0556 58 RPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFV 90 (663)
T ss_pred CCeEEEecchhHHHHHHHHHHHhCcCcceEEEe
Confidence 699999997 56679999999999976666555
No 135
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=70.10 E-value=2 Score=48.72 Aligned_cols=49 Identities=37% Similarity=0.848 Sum_probs=37.9
Q ss_pred hhhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 411 RERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 411 ~~~v~c~c~~~~~~~~~~~~~v~C~~--c~-~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
.+...|+|..++ -|..|.||. |. .|-|-.|||.... +.+..+|+.|..
T Consensus 217 ~e~~yC~Cnqvs-----yg~Mi~CDn~~C~~eWFH~~CVGL~~~------------------------PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 217 DEPTYCICNQVS-----YGKMIGCDNPGCPIEWFHFTCVGLKTK------------------------PKGKWYCPRCKA 267 (274)
T ss_pred CCCEEEEecccc-----cccccccCCCCCCcceEEEeccccccC------------------------CCCcccchhhhh
Confidence 345679998443 378999999 99 8999999997643 345689999975
Q ss_pred h
Q 001153 488 L 488 (1137)
Q Consensus 488 ~ 488 (1137)
.
T Consensus 268 ~ 268 (274)
T KOG1973|consen 268 E 268 (274)
T ss_pred h
Confidence 4
No 136
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.37 E-value=25 Score=45.26 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=36.9
Q ss_pred cceeEEEecccccccChhHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 597 IFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 597 i~w~rVILDEAH~IKN~~S~~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
-.|.++||||+|++.+.. ....++.| ....+++|+.|=.+.=+.-|.+-...+...++.
T Consensus 118 gr~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CCceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 358899999999996432 22233444 456788998887665555555554444444443
No 137
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=68.97 E-value=4.8 Score=39.36 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.6
Q ss_pred eEEEecccccccChhHHHHHHHHHh--ccCeEEEEeccC
Q 001153 600 WRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTP 636 (1137)
Q Consensus 600 ~rVILDEAH~IKN~~S~~~kal~~L--~a~~RwlLTGTP 636 (1137)
..||+||+|.+. +......++.+ .....++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25556666666 567799999999
No 138
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.75 E-value=24 Score=42.60 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=66.7
Q ss_pred cEEEEeCCchh-H---HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 500 ATLIVCPAPIL-A---QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 500 ~tLIV~P~SLl-~---QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
..|||.|+-=+ . +=...|..|.+ .++...+-|...... .+..-.-....|+|.|-+.|..-+.+-.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~--~l~~~l~vGG~~v~~----Di~~fkee~~nIlVgTPGRL~di~~~~~---- 150 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP--NLNCELLVGGRSVEE----DIKTFKEEGPNILVGTPGRLLDILQREA---- 150 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh--ccceEEEecCccHHH----HHHHHHHhCCcEEEeCchhHHHHHhchh----
Confidence 57999998533 3 34455666665 788888888754321 0111122346799999888776543210
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhccCeEEE-Eecc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWC-ITGT 635 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a~~Rwl-LTGT 635 (1137)
..+.-..-..+|||||.++-... ......+..|+..+|-. .|+|
T Consensus 151 ----------------~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 151 ----------------EKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSAT 197 (567)
T ss_pred ----------------hhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccch
Confidence 01222345689999999986543 55566677777666654 3555
No 139
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=66.98 E-value=25 Score=45.30 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=54.3
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||.= .+++.+-..-+.+.-- -.+..|....... -....++-+++..+.|.+...
T Consensus 79 ~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~---------i~~~~~~rLivqIdSL~R~~~--------- 137 (824)
T PF02399_consen 79 KSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYI---------IDGRPYDRLIVQIDSLHRLDG--------- 137 (824)
T ss_pred CeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeecccccc---------ccccccCeEEEEehhhhhccc---------
Confidence 35666643 4566666555554321 1334444433211 111357889999998876421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh-hH-------HHHHHHHHh--ccCeEEEEeccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-------AATEMALRL--YAKHRWCITGTP 636 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-~S-------~~~kal~~L--~a~~RwlLTGTP 636 (1137)
..+. +|+.|||||+-.+-+. .| .....+..+ ++++.+++-||=
T Consensus 138 --------------~~l~--~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 138 --------------SLLD--RYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred --------------cccc--ccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 1122 3899999998653222 12 222223332 588889998883
No 140
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=66.84 E-value=4.2 Score=52.26 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=33.6
Q ss_pred hhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh
Q 001153 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1137)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1137)
.....+|||||++..|-.++.. +. ...|.......+|+||||.+....
T Consensus 215 ~~a~~AdivVtNH~LLladl~~------~~-------------~~iLp~~~~~~lViDEAH~L~d~A 262 (697)
T PRK11747 215 REIDEADVVVANHDLVLADLEL------GG-------------GVVLPDPENLLYVLDEGHHLPDVA 262 (697)
T ss_pred HHHhhCCEEEECcHHHHhhhhc------cC-------------CcccCCCCCCEEEEECccchHHHH
Confidence 3457899999999999987631 00 012333457889999999997543
No 141
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=65.63 E-value=56 Score=37.11 Aligned_cols=87 Identities=18% Similarity=0.076 Sum_probs=49.4
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+++=||+.+.-+ .+|...|-+++ ++.|-...+..... .....-..||+-+|-..+.-++-.+.-.
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L---Glsv~~~~~~~~~~-------~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~- 187 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL---GLSVGIITSDMSSE-------ERREAYAADIVYGTNSEFGFDYLRDNLA- 187 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT---T--EEEEETTTEHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTT--
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh---hhccccCccccCHH-------HHHHHHhCcccccccchhhHHHHHHHHh-
Confidence 456677777655 37999999988 68886665543210 1223446789988888777654211100
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccc
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~I 610 (1137)
..+.......++.+|+||+..+
T Consensus 188 --------------~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 188 --------------LSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp --------------SSGGG--SSSSSEEEECTHHHH
T ss_pred --------------hccchhccCCCCEEEEeccceE
Confidence 0011223456789999998764
No 142
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=65.41 E-value=13 Score=47.95 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=53.7
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+.+-||+|+..+. .|...+-++. +++|-...|..... .....-.+||+-+|-..|.-++-.+.-..
T Consensus 122 ~~v~vvT~neyLA~Rd~e~~~~~~~~L---Gl~vg~i~~~~~~~-------~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~ 191 (796)
T PRK12906 122 KGVHVVTVNEYLSSRDATEMGELYRWL---GLTVGLNLNSMSPD-------EKRAAYNCDITYSTNSELGFDYLRDNMVV 191 (796)
T ss_pred CCeEEEeccHHHHHhhHHHHHHHHHhc---CCeEEEeCCCCCHH-------HHHHHhcCCCeecCCccccccchhhcccc
Confidence 4678889988773 6888888877 68888877653221 22344567888777666655432111000
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccc
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~I 610 (1137)
.+..+....++.+|+||+..+
T Consensus 192 ---------------~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 192 ---------------YKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred ---------------chhhhhccCcceeeeccchhe
Confidence 011233456788999998875
No 143
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=64.40 E-value=16 Score=40.87 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=15.9
Q ss_pred cceeecCCCccHHHHHHHHH
Q 001153 359 GGILADEMGLGKTVELLACI 378 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALI 378 (1137)
.-+|.=..|.|||..+-++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 44788899999999876654
No 144
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=64.19 E-value=17 Score=46.37 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=26.5
Q ss_pred CcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEeccccc
Q 001153 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM 609 (1137)
Q Consensus 553 ~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~ 609 (1137)
-.|-.+|-+.|.+++.+ -+.--.+..|||||||.
T Consensus 350 T~IkFMTDGVLLrEi~~-----------------------DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 350 TSIKFMTDGVLLREIEN-----------------------DFLLTKYSVIILDEAHE 383 (1172)
T ss_pred ceeEEecchHHHHHHHH-----------------------hHhhhhceeEEechhhh
Confidence 45888999999998754 24445678999999996
No 145
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.15 E-value=37 Score=43.27 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=31.4
Q ss_pred ceeEEEecccccccChh-HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 598 FWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~-S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
.|..+|+||+|++-... ....+.+..-...-+++++.|=...-+.-+.+-...+...++.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs 178 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCC
Confidence 57799999999995321 1122222222344578887765444433444433333334443
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=64.11 E-value=52 Score=42.49 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=66.0
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+||++|. ++..|-.+.|+..+ +.++.++|..=..+.... .-.....++..|||=|...+-.
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~-~W~~~~~G~~~vVIGtRSAlF~------------ 309 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYR-VWRRARRGEARVVIGTRSALFL------------ 309 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHH-HHHHHhcCCceEEEEechhhcC------------
Confidence 579999996 68899999998888 478888886522211000 0012223567799877776553
Q ss_pred hhhhhhcccCCCcchhccccceeEEEeccccc--ccChhHHHHH--HH----HHhccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAATE--MA----LRLYAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~--IKN~~S~~~k--al----~~L~a~~RwlLTGTPi 637 (1137)
||.. -..||+||=|- .|..+...+. -+ .....--.++-|+||-
T Consensus 310 ---------------Pf~~--LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 310 ---------------PFKN--LGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred ---------------chhh--ccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 3333 34899999995 5555432221 11 1234455788899994
No 147
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.96 E-value=5 Score=51.69 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhc
Q 001153 515 AEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL 594 (1137)
Q Consensus 515 ~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L 594 (1137)
+|+.++.. ...++.|... ...+..+||||.+|..|-.... +. ..-
T Consensus 172 EdL~~~g~--~~~~CPY~~s------------r~~~~~advIi~pYnyl~dp~~---------r~------------~~~ 216 (705)
T TIGR00604 172 EDLVEYGE--LLGLCPYFAT------------RKMLPFANIVLLPYQYLLDPKI---------RS------------AVS 216 (705)
T ss_pred HHHHHhcc--cCCCCccHHH------------HHhhhcCCEEEechHHhcCHHH---------HH------------Hhh
Confidence 45555553 5566777753 3456789999999998864311 00 011
Q ss_pred cccceeEEEecccccccCh
Q 001153 595 TRIFWWRICLDEAQMVESN 613 (1137)
Q Consensus 595 ~~i~w~rVILDEAH~IKN~ 613 (1137)
..+.-..||+||||+|-+.
T Consensus 217 ~~l~~~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 217 IELKDSIVIFDEAHNLDNV 235 (705)
T ss_pred cccccCEEEEECccchHHH
Confidence 2234478999999999654
No 148
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=61.38 E-value=6 Score=47.20 Aligned_cols=76 Identities=24% Similarity=0.531 Sum_probs=46.7
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCC---CCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 001153 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP---RGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1137)
Q Consensus 413 ~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1137)
+..|+|..- +...-.-.||.|+.|+-|.|.+|---.. .|.. ....+...+..|.|..|..
T Consensus 129 C~C~iC~kf-D~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s--------------~~g~~g~~d~~f~C~~C~~-- 191 (446)
T PF07227_consen 129 CMCCICSKF-DDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPS--------------VKGSIGTLDMQFHCRACGK-- 191 (446)
T ss_pred CCccccCCc-ccCCCCeeEEeccCCCceehhhhhcccccccCCcc--------------CCCCCccCceEEEccCCCC--
Confidence 445567553 3333445799999999999999952111 0100 0111122467899999975
Q ss_pred hccCCCCCCCcEEEEeCCchhHHHHHHHHhcC
Q 001153 490 EATDSPVATGATLIVCPAPILAQWDAEITRHT 521 (1137)
Q Consensus 490 ~~~~~~~~~~~tLIV~P~SLl~QW~~EI~k~~ 521 (1137)
++-++..|++-|....
T Consensus 192 ----------------~seLlG~vk~vf~~ca 207 (446)
T PF07227_consen 192 ----------------TSELLGFVKKVFQTCA 207 (446)
T ss_pred ----------------hhhHHHHHHHHHHHHH
Confidence 2457888888777654
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=60.68 E-value=6.5 Score=49.74 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=30.1
Q ss_pred hcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh
Q 001153 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1137)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1137)
...+|||||++..|..+... .. ..|. ..+.||+||||.+....
T Consensus 180 a~~AdivItNHalL~~~~~~----------------~~----~iLP--~~~~lIiDEAH~L~d~A 222 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRD----------------KW----GLLP--QPDILIVDEAHLFEQNI 222 (636)
T ss_pred cccCCEEEECHHHHHHHhhh----------------hc----CCCC--CCCEEEEeCCcchHHHH
Confidence 57789999999999875311 00 1222 36899999999997544
No 150
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.56 E-value=41 Score=40.97 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCCCCcE-EEEeCC-chhHHHHHHHHhcCCCCCCeEEE-EcCCCcccccccccchhhhh-cCCcEEEEehHHHhhhcccC
Q 001153 495 PVATGAT-LIVCPA-PILAQWDAEITRHTRPGSLKTCI-YEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHD 570 (1137)
Q Consensus 495 ~~~~~~t-LIV~P~-SLl~QW~~EI~k~~~~g~L~V~v-y~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~ 570 (1137)
...-+|+ ||+||. .+..|-..|.++|...=+++++. |.|..+.. ....+ ..+.||+.|-+.|...+..
T Consensus 292 ~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e-------Q~k~Lk~g~EivVaTPgRlid~Vkm- 363 (731)
T KOG0339|consen 292 KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE-------QSKELKEGAEIVVATPGRLIDMVKM- 363 (731)
T ss_pred cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH-------HHHhhhcCCeEEEechHHHHHHHHh-
Confidence 3455676 456676 47789999999996544677655 54543321 11122 5678999999988765421
Q ss_pred CCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHH-HHhccCe-EEEEecc
Q 001153 571 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-LRLYAKH-RWCITGT 635 (1137)
Q Consensus 571 ~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal-~~L~a~~-RwlLTGT 635 (1137)
....-.+-.++|+|||.++-... -.+.+.+ ..++.++ .++.++|
T Consensus 364 ---------------------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 364 ---------------------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred ---------------------hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 01111233478999999876543 2222333 3344443 5666655
No 151
>KOG4284 consensus DEAD box protein [Transcription]
Probab=58.27 E-value=42 Score=42.02 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=80.3
Q ss_pred CCCCcEEEEeCCchh-HHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 496 VATGATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 496 ~~~~~tLIV~P~SLl-~QW~~EI~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
...--.+||+|.-=+ -|-.+-|.+.++. .+++..+|-|...... +...+.+..|||-|-+.+..-+..
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~------d~~rlk~~rIvIGtPGRi~qL~el---- 160 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKL------DLIRLKQTRIVIGTPGRIAQLVEL---- 160 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhh------hhhhhhhceEEecCchHHHHHHHh----
Confidence 334567999998754 4777777766641 3688999998765432 556677888999999988875432
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChhH---HHHHHHHHhc-cCeEEEEeccCCCCChhhh
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA---AATEMALRLY-AKHRWCITGTPIQRKLDDL 644 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S---~~~kal~~L~-a~~RwlLTGTPiqN~l~DL 644 (1137)
..+..-+-++.|||||..+-...| .....+..|+ .+-.+++|+|=-+| |+++
T Consensus 161 ------------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn~ 216 (980)
T KOG4284|consen 161 ------------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDNL 216 (980)
T ss_pred ------------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHHH
Confidence 123333556899999999866544 4445556665 45578889995444 4444
No 152
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=57.51 E-value=10 Score=41.39 Aligned_cols=44 Identities=27% Similarity=0.199 Sum_probs=22.4
Q ss_pred cceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChh
Q 001153 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLD 642 (1137)
Q Consensus 597 i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~ 642 (1137)
+....||+||||++.. ...-..+.++....+++++|=|.|....
T Consensus 118 ~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 3457999999998753 2334445567788999999999887543
No 153
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.70 E-value=66 Score=40.00 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=27.6
Q ss_pred cceeEEEecccccccChhHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHh
Q 001153 597 IFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 597 i~w~rVILDEAH~IKN~~S~~~kal~~L---~a~~RwlLTGTPiqN~l~DL~s 646 (1137)
-.|.++|+||+|++-.. .....++.| +..-++++..|-.++-+.-+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~--a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S 168 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH--SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS 168 (509)
T ss_pred CCcEEEEEEChHhcCHH--HHHHHHHHHhccCCCeEEEEEECChHhchHHHHH
Confidence 36889999999999532 222233333 3455677766654444433333
No 154
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=55.63 E-value=25 Score=42.90 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=56.7
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
-.+|.+|.- |..|-..|-.+|..+-+++++..-|...-. .....-...++|||.|-..|-.-+..
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~E-----Eq~fqls~gceiviatPgrLid~Len--------- 389 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFE-----EQGFQLSMGCEIVIATPGRLIDSLEN--------- 389 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchh-----hhhhhhhccceeeecCchHHHHHHHH---------
Confidence 468888986 667999999999876667776666543210 01122334688999998887765431
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccC
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN 612 (1137)
-.|..-+--+||+|||.++-.
T Consensus 390 -------------r~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 390 -------------RYLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred -------------HHHHhccCceEeccchhhhhc
Confidence 123333456899999998643
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=55.43 E-value=36 Score=44.49 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=52.0
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+.+-||.++--+ ..|...+-+|. ++.|-+..+..... .....-.+||+-+|-..|.-|+-.+.-..
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~L---GLtvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDYLRDnm~~ 196 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFL---GLSVGLIQQDMSPE-------ERKKNYACDITYATNSELGFDYLRDNMAT 196 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHh---CCeEEEECCCCChH-------HHHHhcCCCeEEecCCcccccchhhhhcc
Confidence 467777777644 38999999999 68887765432110 22334568898888666654431111000
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccc
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~I 610 (1137)
.........++++|+||+..|
T Consensus 197 ---------------~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 197 ---------------DISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ---------------cccccccCccceEEEecccce
Confidence 011233456778899988875
No 156
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=53.19 E-value=28 Score=44.17 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=31.1
Q ss_pred hcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh
Q 001153 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1137)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1137)
..++..+|+|.+.|++-+...+ ..+..+.| ||+||.|+++...
T Consensus 209 nP~ASCLVMTTEILRsMLYRGS--------------------EvmrEVaW--VIFDEIHYMRDkE 251 (1041)
T KOG0948|consen 209 NPDASCLVMTTEILRSMLYRGS--------------------EVMREVAW--VIFDEIHYMRDKE 251 (1041)
T ss_pred CCCCceeeeHHHHHHHHHhccc--------------------hHhheeee--EEeeeehhccccc
Confidence 3557789999999998764211 24556666 8999999998643
No 157
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.47 E-value=87 Score=38.74 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=23.4
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh---ccCeEEEEeccCCC
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQ 638 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L---~a~~RwlLTGTPiq 638 (1137)
.+..+|+||+|++.... ....++.| +..-+++++.|-+.
T Consensus 116 ~~KVvIIDEah~Ls~~A--~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSA--FNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred CceEEEEeChHhCCHHH--HHHHHHHHhCCCCCeEEEEEeCChH
Confidence 67899999999995421 22223333 34456777665433
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=48.33 E-value=1.4e+02 Score=34.99 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.1
Q ss_pred eeecCCCccHHHHHHHHHHHh
Q 001153 361 ILADEMGLGKTVELLACIFAH 381 (1137)
Q Consensus 361 ILADEMGLGKTvq~LALIl~~ 381 (1137)
++.-..|.|||..+.++....
T Consensus 26 Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 26 LLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred eeECCCCCCHHHHHHHHHHHH
Confidence 567788999999998887654
No 159
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=47.69 E-value=13 Score=48.64 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=30.9
Q ss_pred hhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccCh
Q 001153 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1137)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1137)
.....+|||||++..|..++... ..+ -.++.||+||||.+...
T Consensus 409 ~~a~~AdivItNHall~~~~~~~---------------------~~~--p~~~~lIiDEAH~l~~~ 451 (820)
T PRK07246 409 EKAKTARLLITNHAYFLTRVQDD---------------------KDF--ARNKVLVFDEAQKLMLQ 451 (820)
T ss_pred HHHHhCCEEEEchHHHHHHHhhc---------------------cCC--CCCCEEEEECcchhHHH
Confidence 34577999999999998865210 011 14789999999999744
No 160
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=47.08 E-value=36 Score=32.95 Aligned_cols=62 Identities=21% Similarity=0.408 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcCCCCHhHhhhcccCcccccCCCCCccccccch
Q 001153 1063 SGLTYHIQSSLDQLEAS----RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELD 1126 (1137)
Q Consensus 1063 ~~l~~~l~~~l~~l~~~----r~~~~~~~~~~~~~~~~p~~~dv~~~~~C~~c~~~~~g~~C~~C~~~ 1126 (1137)
...+-.+...|++|++. +.+++.++..+...+... .+. ...+.|..|-....|.+|.+|.+-
T Consensus 36 ~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~-~~~-~~~~~C~~CG~pss~~iC~~C~l~ 101 (104)
T TIGR00269 36 LSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKEL-SEQ-EDLRRCERCGEPTSGRICKACKFL 101 (104)
T ss_pred CCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcc-ccc-ccCCcCCcCcCcCCccccHhhhhh
Confidence 45566777778888764 455666665555433211 011 135689999999999999999874
No 161
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=46.78 E-value=13 Score=49.43 Aligned_cols=44 Identities=32% Similarity=0.395 Sum_probs=31.3
Q ss_pred hhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccCh
Q 001153 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1137)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1137)
.....+|||||++..|..++.... ..|. .+..+|+||||++...
T Consensus 427 ~~a~~AdivItNHalLl~dl~~~~--------------------~ilp--~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 427 NRAKFADLVITNHALLLTDLTSEE--------------------PLLP--SYEHIIIDEAHHFEEA 470 (928)
T ss_pred HHHhcCCEEEECHHHHHHHHhhhc--------------------ccCC--CCCeEEEECCchHHHH
Confidence 445789999999999998762100 0121 3689999999999743
No 162
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=46.39 E-value=55 Score=40.38 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=45.0
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcc
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~ 568 (1137)
-.|||+|.- |..|-.+.|...++...+++..+.|.-.... + ..--....||||.|-+.|..-+.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-Q----qRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-Q----QRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-H----HHHHhcCCCEEEecchHHHHHHH
Confidence 479999986 7789888888887767899988888632110 0 00111257899999999887654
No 163
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=45.87 E-value=91 Score=36.68 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=69.5
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
-.||+.|.. +-.|=.+.|.---.+-.+++.++.|....-. ....-..+-++|++|-+.+.-.+....+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~-----qa~~L~~rPHvVvatPGRlad~l~sn~~------ 145 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM-----QAAILSDRPHVVVATPGRLADHLSSNLG------ 145 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhh-----hhhhcccCCCeEecCccccccccccCCc------
Confidence 468999986 5567766665544444788888887644311 1222234567999999988765432100
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHH-HHhccC-eEEEEeccCCCCChhhh
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-LRLYAK-HRWCITGTPIQRKLDDL 644 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal-~~L~a~-~RwlLTGTPiqN~l~DL 644 (1137)
...-.+.+ -..+|+|||.++-+.. ...-..+ ..++.. -.+++|+| |.+++.++
T Consensus 146 ----------~~~~~~~r--lkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSAT-itd~i~ql 201 (442)
T KOG0340|consen 146 ----------VCSWIFQR--LKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT-ITDTIKQL 201 (442)
T ss_pred ----------cchhhhhc--eeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEee-hhhHHHHh
Confidence 11112333 3468999999987653 1222222 224444 67899998 33444443
No 164
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=44.90 E-value=1.2e+02 Score=40.01 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=16.0
Q ss_pred eeecCCCccHHHHHHHHHHH
Q 001153 361 ILADEMGLGKTVELLACIFA 380 (1137)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1137)
||.-..|+|||..+..|...
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARS 60 (824)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67778999999988777644
No 165
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=44.20 E-value=8.2 Score=46.52 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=34.9
Q ss_pred hhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 415 ~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
.|+|+-..+...+ ..|||+.|..|.|..|.----+.... ......|.|..|..
T Consensus 171 c~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l~------------------~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 171 CSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDELA------------------GDPFYEWFCDVCNR 223 (464)
T ss_pred eeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhhc------------------cCccceEeehhhcc
Confidence 4556555555444 67999999999999997322222111 22456789999975
No 166
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=44.15 E-value=61 Score=39.48 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=64.1
Q ss_pred cEEEEeCCchh-HHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 500 ATLIVCPAPIL-AQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 500 ~tLIV~P~SLl-~QW~~EI~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..|||||.--+ .|=..|.++-..-. +..|.+.-|..+.+.. .........|+|.|-+.|...+.....
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e-----~~kl~k~~niliATPGRLlDHlqNt~~----- 225 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE-----ADKLVKGCNILIATPGRLLDHLQNTSG----- 225 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH-----HHHhhccccEEEeCCchHHhHhhcCCc-----
Confidence 58999999754 57766655433211 5666666665443221 111123578999999999877653211
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEecc
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGT 635 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGT 635 (1137)
+.-..-..+|+|||.+|-... --.-+.+..|+ .+..++.|+|
T Consensus 226 ----------------f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT 270 (543)
T KOG0342|consen 226 ----------------FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSAT 270 (543)
T ss_pred ----------------chhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCC
Confidence 111122789999999975432 22333333443 3456778887
No 167
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=43.47 E-value=33 Score=39.97 Aligned_cols=131 Identities=12% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCc-ccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.|-+|||||. ||++.=.-.++.. ++.....+.... +............-.++.++-+|.+.+.+....
T Consensus 134 dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~------ 203 (695)
T KOG0353|consen 134 DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF------ 203 (695)
T ss_pred CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH------
Confidence 4789999997 5665333333332 222222222211 100000001122334566787888877763210
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChh---HHHHHHHH----HhccCeEEEEeccCCCCChhhhHhhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLL 648 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~---S~~~kal~----~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1137)
..+.. ..+....|.+|.+||.|...... -.-++++- +++...-+.||+|...+-++|.-.+|
T Consensus 204 ----mnkle-------ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 204 ----MNKLE-------KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred ----HHHHH-------HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 01111 23455568899999999754321 12233333 45667789999999999888877665
Q ss_pred h
Q 001153 649 R 649 (1137)
Q Consensus 649 ~ 649 (1137)
.
T Consensus 273 ~ 273 (695)
T KOG0353|consen 273 C 273 (695)
T ss_pred h
Confidence 4
No 168
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=43.18 E-value=56 Score=42.74 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=50.5
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
+.+-||+++--+ ..|...+-+|+ ++.|-+..+..... .....-.+||+-+|-..+.-++-.+.-..
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 187 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFL---GLTVGLIQEGMSSE-------ERKKNYLKDITYVTNSELGFDYLRDNMAL 187 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHc---CCceeeeCCCCChH-------HHHHhcCCCCEecCCccccccchhhccCc
Confidence 567788887654 37999999998 58887665432210 12223446877766555444332111000
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccc
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~I 610 (1137)
.+.......++++|+||+..+
T Consensus 188 ---------------~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 188 ---------------SLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred ---------------ChHHhhccccceeeeecchhh
Confidence 011233456789999999875
No 169
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=42.74 E-value=11 Score=41.77 Aligned_cols=49 Identities=37% Similarity=0.860 Sum_probs=37.8
Q ss_pred hhhhhhhhccccccccccccccccccc--ccc-cccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccch
Q 001153 410 KRERVECICGAVSESRKYKGLWVQCDI--CDA-WQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCD 486 (1137)
Q Consensus 410 ~~~~v~c~c~~~~~~~~~~~~~v~C~~--c~~-w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~ 486 (1137)
.++.+.|.|...+- |..|.||. |.. |-|-.|||...- +.+..+|+.|.
T Consensus 218 e~e~lYCfCqqvSy-----GqMVaCDn~nCkrEWFH~~CVGLk~p------------------------PKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYCFCQQVSY-----GQMVACDNANCKREWFHLECVGLKEP------------------------PKGKWYCPECK 268 (271)
T ss_pred cCceeEEEeccccc-----ccceecCCCCCchhheeccccccCCC------------------------CCCcEeCHHhH
Confidence 34678999998864 78899964 544 999999997643 45778999996
Q ss_pred h
Q 001153 487 E 487 (1137)
Q Consensus 487 ~ 487 (1137)
.
T Consensus 269 ~ 269 (271)
T COG5034 269 K 269 (271)
T ss_pred h
Confidence 4
No 170
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=42.19 E-value=40 Score=38.47 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=16.2
Q ss_pred cceeecCCCccHHHHHHHHHH
Q 001153 359 GGILADEMGLGKTVELLACIF 379 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALIl 379 (1137)
+-+|--+.|.|||..+-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 457778999999998766543
No 171
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=42.14 E-value=39 Score=44.80 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=79.6
Q ss_pred CCCCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCccccc-ccccchhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 496 VATGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 496 ~~~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~-~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
...+-||||.|. ||+.- .+.+..+ ..++....++....... ............+.|+-.|-+.+...-..
T Consensus 302 l~~gitvVISPL~SLm~D---Qv~~L~~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l---- 373 (941)
T KOG0351|consen 302 LLGGVTVVISPLISLMQD---QVTHLSK-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGL---- 373 (941)
T ss_pred ccCCceEEeccHHHHHHH---HHHhhhh-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccch----
Confidence 445789999996 56542 2222222 24555555555432100 00000111123578888899988764210
Q ss_pred CccchhhhhhcccCCCcchhccc-cceeEEEecccccccChh---HHHHHHHHHh----ccCeEEEEeccCCCCChhhhH
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTR-IFWWRICLDEAQMVESNA---AAATEMALRL----YAKHRWCITGTPIQRKLDDLY 645 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~-i~w~rVILDEAH~IKN~~---S~~~kal~~L----~a~~RwlLTGTPiqN~l~DL~ 645 (1137)
...- ..|.. -.-.++|+||||.+.... -.-++.+..| ...--++||+|-..+--+|+.
T Consensus 374 -------~~~~-------~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi 439 (941)
T KOG0351|consen 374 -------LESL-------ADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVI 439 (941)
T ss_pred -------hhHH-------HhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHH
Confidence 0000 00111 114689999999986543 2333444333 455689999999988889999
Q ss_pred hhhhhccCCCCC
Q 001153 646 GLLRFLKSSPFS 657 (1137)
Q Consensus 646 sLL~FL~p~~f~ 657 (1137)
..|..-++..|.
T Consensus 440 ~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 440 RSLGLRNPELFK 451 (941)
T ss_pred HHhCCCCcceec
Confidence 999988887554
No 172
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=41.15 E-value=14 Score=46.44 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEe
Q 001153 525 SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICL 604 (1137)
Q Consensus 525 ~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVIL 604 (1137)
.++.+.|+|++. ....+++|+-.|..|-.+... . +.=..+.=..||+
T Consensus 308 ~~~~CPYY~SR~------------avp~aqlV~LPYQ~LL~~stR---------~------------slgI~LkdsIvIi 354 (821)
T KOG1133|consen 308 ELRGCPYYASRR------------AVPQAQLVTLPYQLLLHESTR---------K------------SLGISLKDSIVII 354 (821)
T ss_pred hcCCCCchhhhh------------ccccccEEeccHHHHHhHHHH---------H------------hcCccccccEEEE
Confidence 677888998654 346689999999999876321 0 1112334468999
Q ss_pred cccccccChh
Q 001153 605 DEAQMVESNA 614 (1137)
Q Consensus 605 DEAH~IKN~~ 614 (1137)
||||++-+.-
T Consensus 355 DEAHNlidti 364 (821)
T KOG1133|consen 355 DEAHNLIDTI 364 (821)
T ss_pred echhHHHHHH
Confidence 9999986643
No 173
>PF13173 AAA_14: AAA domain
Probab=39.74 E-value=31 Score=34.09 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=25.0
Q ss_pred eeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 599 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 599 w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
-.+|++||+|.+.+..... +.+..-....++++||.-..
T Consensus 62 ~~~i~iDEiq~~~~~~~~l-k~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDAL-KFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CcEEEEehhhhhccHHHHH-HHHHHhccCceEEEEccchH
Confidence 4579999999998643222 22222223569999998543
No 174
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.91 E-value=1.2e+02 Score=38.25 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.3
Q ss_pred eeecCCCccHHHHHHHHHHH
Q 001153 361 ILADEMGLGKTVELLACIFA 380 (1137)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1137)
|+.-.-|.|||..+.++.-+
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 66778899999998887754
No 175
>CHL00181 cbbX CbbX; Provisional
Probab=35.87 E-value=61 Score=37.11 Aligned_cols=20 Identities=25% Similarity=0.120 Sum_probs=16.1
Q ss_pred ceeecCCCccHHHHHHHHHH
Q 001153 360 GILADEMGLGKTVELLACIF 379 (1137)
Q Consensus 360 GILADEMGLGKTvq~LALIl 379 (1137)
-+|-=..|.|||..+-++..
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 36778999999998877654
No 176
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=34.66 E-value=78 Score=38.02 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=18.0
Q ss_pred cceeecCCCccHHHHHHHHHHH
Q 001153 359 GGILADEMGLGKTVELLACIFA 380 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1137)
+=|+.-..|.|||..+.++...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4568889999999998887654
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=33.67 E-value=2.6e+02 Score=36.86 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=40.7
Q ss_pred cCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhc----c
Q 001153 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY----A 626 (1137)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~----a 626 (1137)
.+..|++.|-.++..|+-. ++ +.--....||+||||++... +.-+-.++..+ .
T Consensus 6 ~~ggi~~~T~rIl~~DlL~---------------~r-------i~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~ 62 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT---------------GI-------IPPELITGILVLRADRIIES-SQEAFILRLYRQKNKT 62 (814)
T ss_pred hcCCEEEEechhhHhHHhc---------------CC-------CCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCC
Confidence 4567888898998888621 11 11223568999999999643 33333344443 3
Q ss_pred CeEEEEeccCCC
Q 001153 627 KHRWCITGTPIQ 638 (1137)
Q Consensus 627 ~~RwlLTGTPiq 638 (1137)
.+..++|..|-.
T Consensus 63 gfIkafSdsP~~ 74 (814)
T TIGR00596 63 GFIKAFSDNPEA 74 (814)
T ss_pred cceEEecCCCcc
Confidence 456788888854
No 178
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=33.44 E-value=43 Score=29.68 Aligned_cols=17 Identities=6% Similarity=-0.228 Sum_probs=16.1
Q ss_pred cCCcchhhhhh-hhhhcC
Q 001153 879 EILPMVANCAT-ELSQNE 895 (1137)
Q Consensus 879 dwnp~~d~QA~-r~~riG 895 (1137)
.|++....|+. ||+|+|
T Consensus 61 ~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 61 PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp ESSHHHHHHHHTTSSTTT
T ss_pred CCCHHHHHHHhhcCCCCC
Confidence 69999999999 999998
No 179
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=33.34 E-value=68 Score=41.46 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=45.4
Q ss_pred cCccccccchhhhhccCCCCCCCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCccccc-ccccchhhhhcCCcE
Q 001153 477 DGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DTSIMDISELVGADI 555 (1137)
Q Consensus 477 ~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~-~~~~~~~~~l~~~DV 555 (1137)
.-+..||.|- +.+|+.+=.. .+.=++|+.+++| ..+++.+.+....+.. ...........++||
T Consensus 473 ~~p~~Cp~Cg------------s~~L~~~G~G-terieeeL~~~FP--~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dI 537 (730)
T COG1198 473 PIPQSCPECG------------SEHLRAVGPG-TERIEEELKRLFP--GARIIRIDSDTTRRKGALEDLLDQFANGEADI 537 (730)
T ss_pred CCCCCCCCCC------------CCeeEEeccc-HHHHHHHHHHHCC--CCcEEEEccccccchhhHHHHHHHHhCCCCCe
Confidence 3456677774 2345544333 4566888999998 8999999887654321 111223344467899
Q ss_pred EEEehHHHhh
Q 001153 556 VLTTYDVLKE 565 (1137)
Q Consensus 556 VITTYetL~~ 565 (1137)
+|-|--....
T Consensus 538 LiGTQmiaKG 547 (730)
T COG1198 538 LIGTQMIAKG 547 (730)
T ss_pred eecchhhhcC
Confidence 9877554443
No 180
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=32.87 E-value=1.3e+02 Score=40.09 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCc
Q 001153 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1137)
Q Consensus 511 ~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~ 590 (1137)
..|+.-+-+|. +|.|-+....... ......-.+||+-.|-..|.-|+-.++-. ..
T Consensus 196 aewm~p~y~fl---GLtVg~i~~~~~~-------~~Rr~aY~~DItYgTn~EfGFDYLRDnma---------------~~ 250 (1025)
T PRK12900 196 KEWMNPVFEFH---GLSVGVILNTMRP-------EERREQYLCDITYGTNNEFGFDYLRDNMA---------------GT 250 (1025)
T ss_pred HHHHHHHHHHh---CCeeeeeCCCCCH-------HHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 38999999998 6888655332111 01223345788777655555443221110 11
Q ss_pred chhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHh
Q 001153 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~s 646 (1137)
+..+.+..+.+.|+||+..|-=. .|+.-+++|| |+.+...++|.
T Consensus 251 ~~~~vqR~~~faIVDEvDSvLID-----------eARTPLIISg-p~~~~~~~~y~ 294 (1025)
T PRK12900 251 PEEMVQRDFYFAIVDEVDSVLID-----------EARTPLIISG-PVPNADNSKFQ 294 (1025)
T ss_pred hhhhhccCCceEEEechhhhhhc-----------cccCceEEeC-CCCCcchHHHH
Confidence 23455678899999999875311 3566789998 44444344443
No 181
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=32.44 E-value=2e+02 Score=36.38 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.7
Q ss_pred eeecCCCccHHHHHHHHHHH
Q 001153 361 ILADEMGLGKTVELLACIFA 380 (1137)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1137)
|+.-+.|.|||..+.++...
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 67779999999998887754
No 182
>PHA00673 acetyltransferase domain containing protein
Probab=32.34 E-value=76 Score=33.12 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=36.6
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh---ccCeEEEEeccCCCCChh
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLD 642 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L---~a~~RwlLTGTPiqN~l~ 642 (1137)
.-+-|++|+.|+=+.-.++..+.+... ...++|-+|+||-.|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 345789999999888888877777653 567899999999999875
No 183
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=31.81 E-value=1.6e+02 Score=38.88 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.6
Q ss_pred cceeecCCCccHHHHHHHHHHHh
Q 001153 359 GGILADEMGLGKTVELLACIFAH 381 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~ 381 (1137)
=-||+-|.|-|||-|.=-+++..
T Consensus 67 vvii~getGsGKTTqlP~~lle~ 89 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEE 89 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhh
Confidence 34889999999999987766654
No 184
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=31.72 E-value=92 Score=41.06 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=81.2
Q ss_pred ccCccccccchhhh-hccCCCCCCCcEEEEeCC-chhHHHHHHHHhcCCCCCC-eEEEEcCCCcccccccccchhhhhcC
Q 001153 476 RDGEHICQWCDELI-EATDSPVATGATLIVCPA-PILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELVG 552 (1137)
Q Consensus 476 ~~~~~~C~~c~~~~-~~~~~~~~~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L-~V~vy~G~~~~~~~~~~~~~~~~l~~ 552 (1137)
....|+|+.|.+.. +. ...+-++-|+|. +++.|=..++.--+....+ +.....|.-...+ . ...-.
T Consensus 537 aGKTfisfY~iEKVLRe----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEY------s-inp~n 605 (1330)
T KOG0949|consen 537 AGKTFISFYAIEKVLRE----SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEY------S-INPWN 605 (1330)
T ss_pred CCceeccHHHHHHHHhh----cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHh------c-CCchh
Confidence 45567888887522 21 234667778885 6777777776543311111 1111112111100 0 01225
Q ss_pred CcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHHHhccCeEEE
Q 001153 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRWC 631 (1137)
Q Consensus 553 ~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~~L~a~~Rwl 631 (1137)
+.|.||--+-+..-+-..+ +.. ... -+-.+||+||.|.|.|.. +.....+..|-..--++
T Consensus 606 CQVLITvPecleslLlspp-----------~~q------~~c--erIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~ 666 (1330)
T KOG0949|consen 606 CQVLITVPECLESLLLSPP-----------HHQ------KFC--ERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLV 666 (1330)
T ss_pred ceEEEEchHHHHHHhcCch-----------hhh------hhh--hcceEEEechhhhccccccchHHHHHHHhcCCCeeE
Confidence 6799998888877543100 000 001 134589999999999886 66666666677777899
Q ss_pred EeccCCCCChhhhHhhhh
Q 001153 632 ITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 632 LTGTPiqN~l~DL~sLL~ 649 (1137)
|++| ++++..++..++
T Consensus 667 LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 667 LSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred Eecc--cCCHHHHHHHHH
Confidence 9999 566766666555
No 185
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=31.38 E-value=4.5e+02 Score=27.24 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.6
Q ss_pred eeecCCCccHHHHHHHHHHHh
Q 001153 361 ILADEMGLGKTVELLACIFAH 381 (1137)
Q Consensus 361 ILADEMGLGKTvq~LALIl~~ 381 (1137)
|+.-.-|.||+-.+.+++...
T Consensus 23 L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 23 LFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 666778999999999988764
No 186
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=30.34 E-value=2.7e+02 Score=32.02 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=71.7
Q ss_pred CcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhc-CCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
--.||+.|.-= -.|-..-|.....+-++.++..-|...... +...+. ...+|.-|-+.+-.-+..
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge------dikkld~G~hvVsGtPGrv~dmikr------- 162 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE------DIKKLDYGQHVVSGTPGRVLDMIKR------- 162 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccch------hhhhhcccceEeeCCCchHHHHHHh-------
Confidence 35899999864 456666565544323555666666554321 111111 123454444443332210
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhc-cCeEEEEeccCCCCChhhhHhhhhhccC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~-a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1137)
..|.-..-.++|||||..+-|. ..+.+...+.|+ .-..+++|+|- +.|+.-+..+..+
T Consensus 163 ---------------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmt 223 (400)
T KOG0328|consen 163 ---------------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMT 223 (400)
T ss_pred ---------------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcC
Confidence 1244555679999999987554 478888888886 66788889984 3444444444444
Q ss_pred CC
Q 001153 654 SP 655 (1137)
Q Consensus 654 ~~ 655 (1137)
+|
T Consensus 224 dp 225 (400)
T KOG0328|consen 224 DP 225 (400)
T ss_pred Cc
Confidence 43
No 187
>PLN03025 replication factor C subunit; Provisional
Probab=30.25 E-value=71 Score=36.96 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=34.0
Q ss_pred ceeEEEecccccccChhHHH-HHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCC
Q 001153 598 FWWRICLDEAQMVESNAAAA-TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~-~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~ 655 (1137)
.|..||+||+|.+-...... .+.+.......+++++.++...-+..|-+-...+...+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 58899999999985322111 12222224556788988876655555555544444333
No 188
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.57 E-value=1e+02 Score=38.21 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=32.9
Q ss_pred chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccc-cccchhhhhcCCcEEEEehH
Q 001153 508 PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD-TSIMDISELVGADIVLTTYD 561 (1137)
Q Consensus 508 SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~-~~~~~~~~l~~~DVVITTYe 561 (1137)
.=.+...+|+.+.+| ..++..+++....+... ......-.-.++||+|.|--
T Consensus 269 ~Gte~~~e~l~~~fp--~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ 321 (505)
T TIGR00595 269 YGTEQVEEELAKLFP--GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM 321 (505)
T ss_pred ccHHHHHHHHHhhCC--CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc
Confidence 346788899999997 78999999875433210 11112222356889987654
No 189
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=29.27 E-value=1.8e+02 Score=38.95 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCc
Q 001153 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1137)
Q Consensus 511 ~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~ 590 (1137)
..|+..+-+|. +|.|-+.....-. .......-.+||+-+|-..|.-|+-.++-. ..
T Consensus 227 aewmgply~fL---GLsvg~i~~~~~~------~~~rr~aY~~DItYgTn~EfGFDYLRDnm~---------------~~ 282 (1112)
T PRK12901 227 SEWMGPLYEFH---GLSVDCIDKHQPN------SEARRKAYNADITYGTNNEFGFDYLRDNMA---------------HS 282 (1112)
T ss_pred HHHHHHHHHHh---CCceeecCCCCCC------HHHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 38999999998 6888665431100 001223345788777665555443221110 01
Q ss_pred chhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 001153 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
+..+.+..+.+.|+||+..|-=. .|+--+++||. ..+.-.++|..
T Consensus 283 ~~~~vqR~~~fAIVDEvDSILID-----------EARTPLIISGp-~~~~~~~~y~~ 327 (1112)
T PRK12901 283 PEDLVQRKHNYAIVDEVDSVLID-----------DARTPLIISGP-VPKGDDQEFEE 327 (1112)
T ss_pred hHhhhCcCCceeEeechhhhhhc-----------cccCcEEEeCC-CCCccHHHHHH
Confidence 12355667889999999875311 35566899984 44444444443
No 190
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=28.79 E-value=54 Score=34.41 Aligned_cols=65 Identities=18% Similarity=0.415 Sum_probs=38.3
Q ss_pred cCccchH--HHHHHHHHHH---HHHHHHHHHHHHHhhhhcCCCCHhHh------hhcccCccccc----CCCCCcccccc
Q 001153 1060 RSISGLT--YHIQSSLDQL---EASRKTLLDRLLEIDQTMEKPKEEDM------DRMRHCRICYG----VGDGPICVHCE 1124 (1137)
Q Consensus 1060 ~~~~~l~--~~l~~~l~~l---~~~r~~~~~~~~~~~~~~~~p~~~dv------~~~~~C~~c~~----~~~g~~C~~C~ 1124 (1137)
....||+ |+|+..+.+| ++-|+.++.+-.+=.+...-|+---| -...+|..|-- .-.|..|+-|-
T Consensus 103 eE~kGlKKFflLS~R~r~LiiKHKVrNe~v~~Wf~EeEvyGmpKi~~iika~tLsk~~hcilCtvCe~r~w~g~~CPKCG 182 (200)
T PF12387_consen 103 EESKGLKKFFLLSGRVRNLIIKHKVRNETVASWFGEEEVYGMPKIITIIKAATLSKSKHCILCTVCEGREWKGGNCPKCG 182 (200)
T ss_pred hhhcCcceeeeehhHHHHHHHHhHhhhHHHHHHcccccccCcchhhhhhhHHhccCCCceEEEeeeecCccCCCCCCccc
Confidence 4567776 8889888888 56778887776433333333543333 23355666543 22466677773
No 191
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.53 E-value=4.3e+02 Score=33.82 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=31.6
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhhccCCCCCc
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1137)
.+..||+||+|++... .....++.| .....++++.|-...-+.-|-+-...+...++..
T Consensus 121 ~~KVvIIdea~~Ls~~--a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~ 182 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA--AFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQV 182 (614)
T ss_pred CcEEEEEECcccCCHH--HHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCH
Confidence 5789999999999432 222233333 3455677776633333333444444444444443
No 192
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=28.52 E-value=93 Score=39.95 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=24.2
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEE
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIY 531 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy 531 (1137)
+|+|||+|.- +..||.+|++.|+| .-.|..|
T Consensus 55 ~p~Lvi~~n~~~A~ql~~el~~f~p--~~~V~~f 86 (655)
T TIGR00631 55 RPTLVIAHNKTLAAQLYNEFKEFFP--ENAVEYF 86 (655)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhCC--CCeEEEE
Confidence 5899999986 55799999999997 3334444
No 193
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.37 E-value=21 Score=36.61 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=25.7
Q ss_pred CCHhHhhhcccCcccccC-----CCCCccccccch
Q 001153 1097 PKEEDMDRMRHCRICYGV-----GDGPICVHCELD 1126 (1137)
Q Consensus 1097 p~~~dv~~~~~C~~c~~~-----~~g~~C~~C~~~ 1126 (1137)
|---.|++-++|.+|+-. .+|..|-||.+.
T Consensus 125 PGgfkVrkkgnvyYCPVKdkq~n~pgslC~fCva~ 159 (165)
T COG4066 125 PGGFKVRKKGNVYYCPVKDKQLNQPGSLCEFCVAK 159 (165)
T ss_pred CCceEEEeeCCEEeccccccccCCCcchhheeecc
Confidence 567789999999999973 579999999874
No 194
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=28.34 E-value=71 Score=34.28 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=24.3
Q ss_pred eeEEEecccccccChhHHHHHHHHHhcc-CeEEEEeccCCC
Q 001153 599 WWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQ 638 (1137)
Q Consensus 599 w~rVILDEAH~IKN~~S~~~kal~~L~a-~~RwlLTGTPiq 638 (1137)
.++||+|||.++.+. .....+..+.. ..++++.|-|-|
T Consensus 94 ~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 94 KDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp TSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred ccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcch
Confidence 459999999999654 33344444443 679999999876
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=27.95 E-value=4.6e+02 Score=34.99 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.9
Q ss_pred hccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
.+...+||++|+|||-.|--+. .+.-|.-..|++|-|-+.|
T Consensus 791 lf~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 791 LFVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 4667789999999998886553 3445667788888887765
No 196
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.86 E-value=3.4e+02 Score=33.80 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.3
Q ss_pred eeecCCCccHHHHHHHHHHH
Q 001153 361 ILADEMGLGKTVELLACIFA 380 (1137)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1137)
++.-..|.|||..+.++...
T Consensus 40 Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 66778899999998877654
No 197
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=27.56 E-value=32 Score=40.22 Aligned_cols=41 Identities=29% Similarity=0.202 Sum_probs=29.7
Q ss_pred ceeEEEecccccccChhHHHHHH-HHHhccCeEEEEeccCCCCCh
Q 001153 598 FWWRICLDEAQMVESNAAAATEM-ALRLYAKHRWCITGTPIQRKL 641 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~ka-l~~L~a~~RwlLTGTPiqN~l 641 (1137)
+=..|||||||+ .+..+.+| +.+|-...+..+||.+.|=.+
T Consensus 243 ~dAfVIlDEaQN---tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 243 NDAFVILDEAQN---TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCeEEEEecccc---cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 345799999997 33344443 446788899999999988544
No 198
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.27 E-value=44 Score=34.27 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=39.1
Q ss_pred CCCCCCccccCccccceeccCCCcccCCCCCCCCCcccceeecCCCccHHHHHHHHHHHhcCC
Q 001153 322 SPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKP 384 (1137)
Q Consensus 322 ~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~~rGGILADEMGLGKTvq~LALIl~~~~~ 384 (1137)
.|-|....-...+..+|||.+|+.--++++.......|+ -.||-=.-|.|+-|+..|...
T Consensus 8 P~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~~---~~~~~p~~Vr~sHlLVKH~~S 67 (163)
T KOG3259|consen 8 PPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGGK---IGQGEPARVRCSHLLVKHKGS 67 (163)
T ss_pred CchhheeccccCCCcceeccccchhhccCCCcccccccc---ccCCCccceeEEEEEEccccC
Confidence 356877766777889999999998888777655443443 333334555566566555433
No 199
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=25.87 E-value=2.2e+02 Score=35.94 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=38.0
Q ss_pred hhccccceeEEEeccccccc----ChhHHHHHHHHH---hccCeEEEEeccCCCCChhhhHhh
Q 001153 592 TLLTRIFWWRICLDEAQMVE----SNAAAATEMALR---LYAKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 592 s~L~~i~w~rVILDEAH~IK----N~~S~~~kal~~---L~a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
+.|....-.+|++||....- ........+-.+ .....++++..||....-..++.+
T Consensus 128 ~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 128 SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45778888999999999873 222333333333 346689999999998755455444
No 200
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.17 E-value=3.7e+02 Score=34.45 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=17.9
Q ss_pred ceeecCCCccHHHHHHHHHHHh
Q 001153 360 GILADEMGLGKTVELLACIFAH 381 (1137)
Q Consensus 360 GILADEMGLGKTvq~LALIl~~ 381 (1137)
=||.-+.|.|||..+.++....
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 3677899999999998887653
No 201
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.81 E-value=1e+02 Score=36.98 Aligned_cols=106 Identities=21% Similarity=0.156 Sum_probs=66.9
Q ss_pred CcEEEEeCCc-hhHH---HHHHHHhcCCCCCCeEE-EEcCCCcccccccccchhhhh-cCCcEEEEehHHHhhhcccCCC
Q 001153 499 GATLIVCPAP-ILAQ---WDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 572 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~Q---W~~EI~k~~~~g~L~V~-vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~ 572 (1137)
-+.||+.|+. |..| -..++.+++ .++.. .|+|.+... ....+ .+-||||.|-..+..-...
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt---~lr~s~~~ggD~~ee-------qf~~l~~npDii~ATpgr~~h~~ve--- 157 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGT---KLRQSLLVGGDSIEE-------QFILLNENPDIIIATPGRLLHLGVE--- 157 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhcccc---chhhhhhcccchHHH-------HHHHhccCCCEEEecCceeeeeehh---
Confidence 3789999986 4344 556666666 56665 666654431 22223 3689999887766542110
Q ss_pred CCccchhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhcc-CeEEEEeccC
Q 001153 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYA-KHRWCITGTP 636 (1137)
Q Consensus 573 ~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~a-~~RwlLTGTP 636 (1137)
-.|.--.-.+||+|||.+|-.. .-+..+.+.+++. .-.+++|||-
T Consensus 158 -------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 158 -------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred -------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 0122233458999999997543 4677778888864 3588899993
No 202
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=24.74 E-value=60 Score=38.39 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=29.4
Q ss_pred ceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCC
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN 639 (1137)
+=..||+||||++.-. ..--.+.+.-...++++||-|-|-
T Consensus 351 ~~~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 351 PDSFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ccceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 3457999999998643 333445566778899999999774
No 203
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=24.32 E-value=2.1e+02 Score=37.85 Aligned_cols=100 Identities=7% Similarity=-0.088 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHH----HH-HHHhh--------------
Q 001153 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAV----VE-EHSED-------------- 862 (1137)
Q Consensus 802 t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l~~----~~-~~~~~-------------- 862 (1137)
|.++-...++..++ ++.+.++-+||.+.....-..|...|.+..... .++.. .+ +.+.+
T Consensus 407 t~~~K~~Aii~ei~-~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h-~vLNAk~~e~EA~IIa~AG~~GaVTIATNMA 484 (925)
T PRK12903 407 TKHAKWKAVVKEVK-RVHKKGQPILIGTAQVEDSETLHELLLEANIPH-TVLNAKQNAREAEIIAKAGQKGAITIATNMA 484 (925)
T ss_pred cHHHHHHHHHHHHH-HHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCc-eeecccchhhHHHHHHhCCCCCeEEEecccc
Confidence 55565666665554 333567899998888888888887776653221 12211 11 11111
Q ss_pred -hcCCCC--------cCeeEEecCCcCCcchhhhhh-hhhhcCCCCceEEE
Q 001153 863 -FRLDPL--------LNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSE 903 (1137)
Q Consensus 863 -f~~D~~--------~~lh~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~ 903 (1137)
--+|.. --||++-.-..=+.-.|+|.. ||-|.|.+=....|
T Consensus 485 GRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 485 GRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 011111 223554433334556899999 99999997555444
No 204
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=24.19 E-value=40 Score=40.51 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=28.2
Q ss_pred ccCeEEEEeccCCCCChhhhHhhhhhccCCCC
Q 001153 625 YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1137)
Q Consensus 625 ~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1137)
+.++-.+.||||+.|.+.|+|++-++|.++-+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 45677899999999999999999999998753
No 205
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=24.05 E-value=5.1e+02 Score=34.64 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------------CCHhHhhhcccCcccccC
Q 001153 1064 GLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEK-------------PKEEDMDRMRHCRICYGV 1114 (1137)
Q Consensus 1064 ~l~~~l~~~l~~l~~~r~~~~~~~~~~~~~~~~-------------p~~~dv~~~~~C~~c~~~ 1114 (1137)
.=.|+=.+-|..++..|.++...+..+.-.-.. -.+.++-++..|.-++++
T Consensus 709 ~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~ 772 (924)
T KOG0920|consen 709 EENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPN 772 (924)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCc
Confidence 335666788999999999999999877543221 124455566667666653
No 206
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=23.57 E-value=27 Score=29.31 Aligned_cols=15 Identities=47% Similarity=1.247 Sum_probs=9.9
Q ss_pred ccccccccccccccc
Q 001153 430 LWVQCDICDAWQHAD 444 (1137)
Q Consensus 430 ~~v~C~~c~~w~h~~ 444 (1137)
.||||+.|..|....
T Consensus 2 ~WVQCd~C~KWR~lp 16 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP 16 (50)
T ss_dssp EEEE-TTT--EEEE-
T ss_pred eEEECCCCCceeeCC
Confidence 499999999999884
No 207
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=22.38 E-value=4.5e+02 Score=31.25 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.3
Q ss_pred eeecCCCccHHHHHHHHHHHh
Q 001153 361 ILADEMGLGKTVELLACIFAH 381 (1137)
Q Consensus 361 ILADEMGLGKTvq~LALIl~~ 381 (1137)
++.-..|+|||..+.++....
T Consensus 45 Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 45 LIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 566688999999999887664
No 208
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.38 E-value=86 Score=39.67 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=31.8
Q ss_pred cceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 597 i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
..+++||+|||-|+-.. ...+.+..++...|++|.|=|-|
T Consensus 258 l~~dvlIiDEaSMvd~~--l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 258 LPLDVLVVDEASMVDLP--LMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred CcccEEEEcccccCCHH--HHHHHHHhcCCCCEEEEECChhh
Confidence 35899999999999643 45556677888889999998765
No 209
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=21.36 E-value=1.7e+02 Score=32.60 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.0
Q ss_pred cEEEEeCCchhHHHHHHHHhcCC
Q 001153 500 ATLIVCPAPILAQWDAEITRHTR 522 (1137)
Q Consensus 500 ~tLIV~P~SLl~QW~~EI~k~~~ 522 (1137)
=+-+|||.+++.|=.+-+...+.
T Consensus 72 LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 72 LVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHH
Confidence 46689999999998887776653
No 210
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.23 E-value=5.6e+02 Score=30.03 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=63.9
Q ss_pred CCcEEEEeCCc----hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 498 TGATLIVCPAP----ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 498 ~~~tLIV~P~S----Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
.=-.+|++|.- -..|-..|+.+|+ .++|.+-.|....+-. ...-.....++|.|-+.+..-.....
T Consensus 153 ~IQ~~ilVPtrelALQtSqvc~~lskh~---~i~vmvttGGT~lrDD-----I~Rl~~~VH~~vgTPGRIlDL~~KgV-- 222 (459)
T KOG0326|consen 153 VIQAIILVPTRELALQTSQVCKELSKHL---GIKVMVTTGGTSLRDD-----IMRLNQTVHLVVGTPGRILDLAKKGV-- 222 (459)
T ss_pred ceeEEEEeecchhhHHHHHHHHHHhccc---CeEEEEecCCcccccc-----eeeecCceEEEEcCChhHHHHHhccc--
Confidence 34689999964 2468899999998 6999999887654311 01111234577877776654332100
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhccCe-EEEEecc
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKH-RWCITGT 635 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a~~-RwlLTGT 635 (1137)
..|. +-..+|+|||..+-+.. ...-+.+.-|+..+ -++-|+|
T Consensus 223 ------------------a~ls--~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 223 ------------------ADLS--DCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred ------------------ccch--hceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 0111 23578999999987665 23334444454443 4445555
No 211
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=21.21 E-value=73 Score=40.67 Aligned_cols=45 Identities=27% Similarity=0.253 Sum_probs=30.0
Q ss_pred hcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh
Q 001153 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1137)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1137)
...+|++|++|..+..+....... .+ -..-..+|+||||.+-+..
T Consensus 192 ~~~ad~vv~nh~~~~~~~~~~~~~-------------------~~-~p~~~v~v~DEAH~l~d~a 236 (654)
T COG1199 192 AENADLVVTNHALLLADVALEESR-------------------IL-LPENDVVVFDEAHNLPDIA 236 (654)
T ss_pred HhhCCEEEEccHHHHhHHHhhhhh-------------------cc-CCcccEEEEeccccchHHH
Confidence 357899999999998864311000 00 1235689999999997643
Done!