Query 001153
Match_columns 1137
No_of_seqs 478 out of 3022
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:42:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.3E-59 1.1E-63 591.4 22.9 367 498-927 286-702 (800)
2 1z3i_X Similar to RAD54-like; 100.0 2.2E-59 7.5E-64 579.6 15.8 372 498-927 114-546 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 9.9E-56 3.4E-60 530.1 26.2 357 498-924 86-468 (500)
4 3dmq_A RNA polymerase-associat 100.0 6.8E-35 2.3E-39 375.1 20.1 347 499-923 201-629 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 6.9E-28 2.3E-32 282.5 20.7 362 499-922 53-488 (494)
6 2fwr_A DNA repair protein RAD2 99.9 2.1E-25 7.1E-30 265.2 16.2 309 499-922 134-467 (472)
7 1z5z_A Helicase of the SNF2/RA 99.9 3.5E-23 1.2E-27 229.9 8.7 203 689-926 13-241 (271)
8 4a2w_A RIG-I, retinoic acid in 99.8 5.5E-20 1.9E-24 236.4 22.8 123 498-647 296-428 (936)
9 3tbk_A RIG-I helicase domain; 99.8 4.3E-19 1.5E-23 213.3 23.3 120 498-644 52-182 (555)
10 4a2p_A RIG-I, retinoic acid in 99.8 8.9E-19 3.1E-23 211.0 24.9 118 498-642 55-182 (556)
11 4a2q_A RIG-I, retinoic acid in 99.8 4.8E-19 1.6E-23 224.3 23.5 122 498-646 296-427 (797)
12 2oca_A DAR protein, ATP-depend 99.8 1.1E-18 3.8E-23 209.3 20.5 119 499-653 158-278 (510)
13 3hgt_A HDA1 complex subunit 3; 99.8 2.5E-20 8.4E-25 209.1 4.8 194 703-921 20-249 (328)
14 2ykg_A Probable ATP-dependent 99.7 3.2E-17 1.1E-21 204.0 22.1 129 499-654 62-208 (696)
15 3h1t_A Type I site-specific re 99.7 1.3E-16 4.5E-21 195.2 19.1 116 498-648 235-353 (590)
16 1rif_A DAR protein, DNA helica 99.7 6.4E-17 2.2E-21 179.7 13.4 119 499-653 158-278 (282)
17 4gl2_A Interferon-induced heli 99.6 3.8E-15 1.3E-19 185.4 21.0 133 499-653 57-215 (699)
18 2z0m_A 337AA long hypothetical 99.6 1.5E-14 5.3E-19 162.3 14.3 111 499-637 57-171 (337)
19 2fz4_A DNA repair protein RAD2 99.6 2.3E-14 8E-19 155.7 14.9 97 499-640 134-232 (237)
20 1xti_A Probable ATP-dependent 99.5 2.8E-13 9.4E-18 155.7 21.2 114 499-638 77-196 (391)
21 1hv8_A Putative ATP-dependent 99.5 4.2E-14 1.4E-18 160.4 13.1 112 499-638 75-190 (367)
22 1s2m_A Putative ATP-dependent 99.4 2.4E-12 8.3E-17 148.6 21.0 112 499-637 90-205 (400)
23 3pey_A ATP-dependent RNA helic 99.4 2E-11 6.7E-16 139.9 22.2 108 499-637 76-188 (395)
24 2gxq_A Heat resistant RNA depe 99.3 9.8E-12 3.3E-16 130.5 15.7 116 499-644 73-192 (207)
25 1t6n_A Probable ATP-dependent 99.3 1.1E-11 3.8E-16 131.8 15.8 117 499-644 83-207 (220)
26 3b6e_A Interferon-induced heli 99.3 6E-12 2.1E-16 132.5 13.4 116 498-635 82-216 (216)
27 3eiq_A Eukaryotic initiation f 99.3 1.5E-11 5.1E-16 142.3 17.3 113 499-637 109-225 (414)
28 1fuu_A Yeast initiation factor 99.3 8.2E-12 2.8E-16 143.3 14.9 111 499-637 90-204 (394)
29 2oxc_A Probable ATP-dependent 99.3 4.3E-11 1.5E-15 128.6 16.8 110 499-636 93-208 (230)
30 1qde_A EIF4A, translation init 99.3 4.7E-11 1.6E-15 127.1 16.6 111 499-637 83-197 (224)
31 2pl3_A Probable ATP-dependent 99.3 2.9E-11 1E-15 130.0 14.7 112 499-637 98-213 (236)
32 1vec_A ATP-dependent RNA helic 99.2 9.6E-11 3.3E-15 122.9 16.0 112 499-637 72-188 (206)
33 1q0u_A Bstdead; DEAD protein, 99.2 1.1E-10 3.8E-15 124.2 15.5 117 499-643 73-197 (219)
34 2j0s_A ATP-dependent RNA helic 99.2 9.9E-11 3.4E-15 135.7 15.2 112 499-637 106-221 (410)
35 1wrb_A DJVLGB; RNA helicase, D 99.1 2.2E-10 7.7E-15 124.6 13.9 112 499-637 101-220 (253)
36 3bor_A Human initiation factor 99.1 5.8E-10 2E-14 120.4 15.4 113 499-637 99-215 (237)
37 3ber_A Probable ATP-dependent 99.1 2E-10 7E-15 125.3 11.7 113 499-637 112-228 (249)
38 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 3.3E-10 1.1E-14 146.0 14.6 107 499-639 331-441 (1038)
39 2eyq_A TRCF, transcription-rep 99.0 1.1E-09 3.8E-14 143.4 14.9 114 499-643 653-768 (1151)
40 3dkp_A Probable ATP-dependent 99.0 4.6E-09 1.6E-13 113.5 15.2 114 499-636 99-220 (245)
41 3iuy_A Probable ATP-dependent 99.0 6.1E-09 2.1E-13 111.3 15.4 110 499-636 95-208 (228)
42 3fht_A ATP-dependent RNA helic 99.0 7.7E-09 2.6E-13 119.2 17.4 110 499-637 96-211 (412)
43 3oiy_A Reverse gyrase helicase 98.9 4.1E-09 1.4E-13 122.7 13.3 116 499-642 65-209 (414)
44 2db3_A ATP-dependent RNA helic 98.9 7.2E-09 2.5E-13 122.0 13.7 112 499-637 130-247 (434)
45 3fho_A ATP-dependent RNA helic 98.8 5.9E-09 2E-13 125.4 11.1 108 499-637 190-302 (508)
46 1gm5_A RECG; helicase, replica 98.8 3E-09 1E-13 133.8 8.0 113 499-642 418-532 (780)
47 2xgj_A ATP-dependent RNA helic 98.8 1.6E-08 5.6E-13 130.6 15.0 100 499-636 130-233 (1010)
48 2i4i_A ATP-dependent RNA helic 98.8 2.3E-08 8E-13 115.7 14.1 112 499-637 102-221 (417)
49 1oyw_A RECQ helicase, ATP-depe 98.8 1.5E-08 5E-13 122.5 11.0 125 499-650 66-198 (523)
50 3fe2_A Probable ATP-dependent 98.8 2.8E-08 9.6E-13 107.4 11.9 111 499-636 103-217 (242)
51 3ly5_A ATP-dependent RNA helic 98.8 6E-08 2.1E-12 106.5 14.4 113 499-637 127-243 (262)
52 3fmp_B ATP-dependent RNA helic 98.7 1.6E-07 5.6E-12 111.5 16.3 110 499-637 163-278 (479)
53 2p6r_A Afuhel308 helicase; pro 98.7 1E-07 3.5E-12 119.0 14.3 115 499-646 69-190 (702)
54 2zj8_A DNA helicase, putative 98.6 1.8E-07 6.1E-12 117.2 14.0 116 499-647 69-188 (720)
55 2va8_A SSO2462, SKI2-type heli 98.6 3.3E-07 1.1E-11 114.6 15.5 116 499-647 76-194 (715)
56 3l9o_A ATP-dependent RNA helic 98.6 3.2E-07 1.1E-11 119.8 15.7 110 499-648 228-341 (1108)
57 3sqw_A ATP-dependent RNA helic 98.6 1.7E-07 5.9E-12 114.3 11.8 113 499-638 96-225 (579)
58 2v1x_A ATP-dependent DNA helic 98.5 1.7E-07 5.7E-12 114.8 11.0 130 499-649 85-223 (591)
59 4a4z_A Antiviral helicase SKI2 98.5 4E-07 1.4E-11 117.7 14.6 103 499-637 83-189 (997)
60 3i5x_A ATP-dependent RNA helic 98.5 3.9E-07 1.4E-11 110.3 13.7 114 499-637 147-275 (563)
61 3fmo_B ATP-dependent RNA helic 98.4 4.6E-06 1.6E-10 93.4 16.2 109 500-637 164-278 (300)
62 4ddu_A Reverse gyrase; topoiso 98.2 1.3E-05 4.6E-10 104.5 16.3 117 499-643 122-267 (1104)
63 1gku_B Reverse gyrase, TOP-RG; 97.8 7.3E-05 2.5E-09 97.4 12.7 112 499-639 100-228 (1054)
64 3crv_A XPD/RAD3 related DNA he 97.6 0.00019 6.3E-09 87.2 11.4 36 499-534 48-84 (551)
65 2vl7_A XPD; helicase, unknown 97.6 0.00022 7.7E-09 86.3 11.6 31 499-533 52-83 (540)
66 2v6i_A RNA helicase; membrane, 97.4 0.00045 1.6E-08 81.1 10.6 101 499-639 32-137 (431)
67 4f92_B U5 small nuclear ribonu 97.3 0.002 6.9E-08 87.5 17.0 119 498-646 134-262 (1724)
68 3llm_A ATP-dependent RNA helic 97.3 0.00072 2.5E-08 72.5 10.3 105 500-639 111-221 (235)
69 4f92_B U5 small nuclear ribonu 97.1 0.0024 8.1E-08 86.9 14.3 118 499-646 973-1101(1724)
70 3o8b_A HCV NS3 protease/helica 97.1 0.0019 6.4E-08 79.7 11.8 99 500-638 259-362 (666)
71 2jlq_A Serine protease subunit 96.9 0.0022 7.7E-08 75.7 10.1 100 499-638 49-153 (451)
72 3o7a_A PHD finger protein 13 v 96.7 0.00045 1.5E-08 57.0 1.4 34 413-450 4-37 (52)
73 2rsd_A E3 SUMO-protein ligase 96.6 0.00063 2.2E-08 59.3 1.5 54 412-487 9-64 (68)
74 2z83_A Helicase/nucleoside tri 96.5 0.0058 2E-07 72.3 10.0 100 499-638 51-155 (459)
75 3o70_A PHD finger protein 13; 96.5 0.00093 3.2E-08 58.2 2.1 50 411-487 17-66 (68)
76 1wee_A PHD finger family prote 96.5 0.00085 2.9E-08 59.1 1.8 51 412-487 15-65 (72)
77 2whx_A Serine protease/ntpase/ 96.3 0.0096 3.3E-07 73.2 10.8 101 499-639 216-321 (618)
78 1wew_A DNA-binding family prot 96.2 0.001 3.4E-08 59.6 0.7 55 412-487 15-71 (78)
79 1yks_A Genome polyprotein [con 96.1 0.018 6.2E-07 67.7 11.2 41 598-639 99-143 (440)
80 2wv9_A Flavivirin protease NS2 96.1 0.01 3.5E-07 73.6 9.1 42 598-639 332-376 (673)
81 3kqi_A GRC5, PHD finger protei 96.1 0.0014 4.7E-08 58.2 0.8 57 410-490 7-63 (75)
82 2ipc_A Preprotein translocase 96.0 0.041 1.4E-06 69.1 13.8 110 500-647 122-238 (997)
83 2lv9_A Histone-lysine N-methyl 95.9 0.0028 9.6E-08 59.2 2.4 35 411-449 26-60 (98)
84 1we9_A PHD finger family prote 95.7 0.0045 1.5E-07 53.0 2.7 50 414-487 7-57 (64)
85 1wep_A PHF8; structural genomi 95.6 0.003 1E-07 56.6 1.0 53 412-488 11-63 (79)
86 1wem_A Death associated transc 95.3 0.0016 5.4E-08 58.0 -1.8 55 413-488 16-70 (76)
87 4a15_A XPD helicase, ATP-depen 95.1 0.023 8E-07 69.8 7.2 22 359-380 24-45 (620)
88 2xau_A PRE-mRNA-splicing facto 94.8 0.066 2.3E-06 67.5 10.1 104 500-636 142-250 (773)
89 3rc3_A ATP-dependent RNA helic 94.5 0.18 6.2E-06 62.5 12.9 94 501-635 182-280 (677)
90 4b3f_X DNA-binding protein smu 94.5 0.22 7.6E-06 61.3 13.8 40 594-638 362-401 (646)
91 1nkt_A Preprotein translocase 94.5 0.25 8.6E-06 62.2 14.0 88 499-611 153-244 (922)
92 2kgg_A Histone demethylase jar 94.2 0.0077 2.6E-07 49.5 -0.3 23 428-450 15-38 (52)
93 2fsf_A Preprotein translocase 94.1 0.18 6.1E-06 63.3 11.5 87 500-611 117-207 (853)
94 1tf5_A Preprotein translocase 93.9 0.23 7.8E-06 62.4 11.9 86 500-610 126-215 (844)
95 2gk6_A Regulator of nonsense t 93.8 0.57 1.9E-05 57.5 15.3 42 594-639 335-376 (624)
96 2k16_A Transcription initiatio 93.3 0.033 1.1E-06 49.2 2.2 51 413-489 18-69 (75)
97 1x4i_A Inhibitor of growth pro 93.2 0.019 6.6E-07 50.2 0.5 50 412-490 5-57 (70)
98 2xb1_A Pygopus homolog 2, B-ce 92.9 0.013 4.6E-07 55.3 -1.0 56 417-488 5-61 (105)
99 2jmi_A Protein YNG1, ING1 homo 92.8 0.051 1.7E-06 49.8 2.7 52 411-491 24-79 (90)
100 3kv5_D JMJC domain-containing 92.5 0.022 7.4E-07 67.8 -0.1 56 410-489 34-89 (488)
101 2wjy_A Regulator of nonsense t 92.3 1.1 3.9E-05 56.5 15.0 42 594-639 511-552 (800)
102 3kv4_A PHD finger protein 8; e 92.2 0.015 5.3E-07 68.2 -1.9 53 413-489 5-57 (447)
103 2ri7_A Nucleosome-remodeling f 92.2 0.023 7.7E-07 58.4 -0.5 54 412-489 7-60 (174)
104 1weu_A Inhibitor of growth fam 92.1 0.076 2.6E-06 48.8 3.0 47 412-487 35-84 (91)
105 3lqh_A Histone-lysine N-methyl 91.5 0.057 1.9E-06 56.0 1.5 33 417-449 7-39 (183)
106 1wen_A Inhibitor of growth fam 91.4 0.11 3.7E-06 45.6 3.0 47 412-487 15-64 (71)
107 2vpb_A Hpygo1, pygopus homolog 91.3 0.013 4.6E-07 50.4 -2.9 34 417-450 10-44 (65)
108 2xzl_A ATP-dependent helicase 90.7 1.2 4.2E-05 56.2 13.0 37 598-638 517-553 (802)
109 2b8t_A Thymidine kinase; deoxy 90.2 1.4 4.9E-05 46.9 11.1 36 597-635 88-124 (223)
110 2g6q_A Inhibitor of growth pro 89.8 0.11 3.9E-06 44.2 1.7 47 412-487 10-59 (62)
111 3c6w_A P28ING5, inhibitor of g 89.7 0.12 4E-06 43.7 1.6 47 412-487 8-57 (59)
112 3e1s_A Exodeoxyribonuclease V, 89.4 1.3 4.5E-05 53.8 11.3 41 597-639 278-318 (574)
113 2orw_A Thymidine kinase; TMTK, 88.7 1.1 3.6E-05 46.1 8.5 35 598-635 76-111 (184)
114 2vnf_A ING 4, P29ING4, inhibit 88.2 0.17 5.7E-06 42.8 1.6 47 412-487 9-58 (60)
115 2j9r_A Thymidine kinase; TK1, 87.1 2.9 9.8E-05 44.3 10.6 35 598-635 101-136 (214)
116 3pur_A Lysine-specific demethy 86.3 0.21 7.2E-06 59.2 1.5 41 427-488 54-94 (528)
117 3upu_A ATP-dependent DNA helic 79.3 4.7 0.00016 47.2 9.4 40 598-639 128-167 (459)
118 2orv_A Thymidine kinase; TP4A 78.2 7.5 0.00026 41.6 9.6 34 598-635 90-124 (234)
119 1xx6_A Thymidine kinase; NESG, 78.1 8.6 0.00029 39.7 9.9 51 598-651 81-138 (191)
120 3vkw_A Replicase large subunit 77.9 4.9 0.00017 47.1 8.7 40 597-639 233-272 (446)
121 2yjt_D ATP-dependent RNA helic 77.7 0.55 1.9E-05 47.2 0.0 83 823-908 31-136 (170)
122 2p6n_A ATP-dependent RNA helic 70.4 0.93 3.2E-05 46.8 0.2 84 823-909 55-161 (191)
123 1t5i_A C_terminal domain of A 69.6 2.1 7.3E-05 43.0 2.7 83 823-908 32-137 (172)
124 2ku7_A MLL1 PHD3-CYP33 RRM chi 69.3 1.3 4.3E-05 42.7 0.8 19 431-449 2-20 (140)
125 2jgn_A DBX, DDX3, ATP-dependen 69.2 1.9 6.5E-05 44.1 2.2 85 822-909 46-153 (185)
126 2hjv_A ATP-dependent RNA helic 67.3 2.4 8.4E-05 42.1 2.5 84 822-908 35-141 (163)
127 1a5t_A Delta prime, HOLB; zinc 66.1 38 0.0013 37.6 12.3 23 359-381 26-48 (334)
128 3jux_A Protein translocase sub 62.3 26 0.00088 43.7 10.5 103 802-907 455-585 (822)
129 1fuk_A Eukaryotic initiation f 57.1 4.3 0.00015 40.3 2.1 85 823-910 31-138 (165)
130 3syl_A Protein CBBX; photosynt 57.0 8.2 0.00028 42.0 4.6 22 359-380 69-90 (309)
131 3rsn_A SET1/ASH2 histone methy 51.9 5.1 0.00017 41.0 1.6 34 414-450 6-39 (177)
132 3e2i_A Thymidine kinase; Zn-bi 48.7 44 0.0015 35.3 8.3 34 598-634 101-135 (219)
133 1c4o_A DNA nucleotide excision 45.4 42 0.0014 41.3 8.7 32 499-532 54-86 (664)
134 2puy_A PHD finger protein 21A; 38.9 18 0.00061 30.1 2.8 39 429-489 15-53 (60)
135 4bbq_A Lysine-specific demethy 38.1 10 0.00036 35.7 1.3 28 423-450 67-94 (117)
136 3eaq_A Heat resistant RNA depe 33.3 13 0.00043 38.7 1.1 85 822-909 31-138 (212)
137 2d7d_A Uvrabc system protein B 32.8 93 0.0032 38.1 9.0 32 499-532 58-90 (661)
138 2o0j_A Terminase, DNA packagin 31.0 47 0.0016 38.0 5.5 56 593-651 268-326 (385)
139 2e6r_A Jumonji/ARID domain-con 30.4 26 0.0009 31.8 2.6 45 417-487 21-65 (92)
140 2yql_A PHD finger protein 21A; 29.3 27 0.00093 28.5 2.3 20 429-448 19-38 (56)
141 1fuu_A Yeast initiation factor 28.6 12 0.00041 41.7 0.0 84 823-909 260-366 (394)
142 1f62_A Transcription factor WS 27.0 21 0.00071 28.5 1.2 19 429-447 13-31 (51)
143 1w36_D RECD, exodeoxyribonucle 26.3 46 0.0016 40.4 4.6 42 598-641 262-303 (608)
144 1xwh_A Autoimmune regulator; P 25.3 46 0.0016 28.2 3.1 37 429-487 18-54 (66)
145 2rb4_A ATP-dependent RNA helic 24.2 18 0.00061 36.1 0.3 85 823-910 35-148 (175)
146 2j0s_A ATP-dependent RNA helic 24.0 22 0.00075 40.0 1.1 84 823-909 277-383 (410)
147 2r2a_A Uncharacterized protein 23.6 30 0.001 35.8 1.9 39 599-637 88-133 (199)
148 1e0l_A Formin binding protein; 23.4 32 0.0011 25.8 1.5 30 322-352 5-34 (37)
149 1mm2_A MI2-beta; PHD, zinc fin 21.9 62 0.0021 26.9 3.2 37 429-487 19-55 (61)
150 3cpe_A Terminase, DNA packagin 21.7 73 0.0025 38.4 5.1 46 593-639 268-316 (592)
151 3u61_B DNA polymerase accessor 21.1 72 0.0025 34.7 4.5 49 598-646 105-155 (324)
152 2l7p_A Histone-lysine N-methyl 20.7 29 0.001 32.2 1.0 17 427-443 24-40 (100)
153 2l5u_A Chromodomain-helicase-D 20.5 35 0.0012 28.5 1.4 37 429-487 21-57 (61)
154 2chg_A Replication factor C sm 20.2 96 0.0033 30.7 5.0 40 598-637 102-142 (226)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-59 Score=591.37 Aligned_cols=367 Identities=17% Similarity=0.197 Sum_probs=274.1
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-------cchhhhhcCCcEEEEehHHHhhhcccC
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-------IMDISELVGADIVLTTYDVLKEDLSHD 570 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~-------~~~~~~l~~~DVVITTYetL~~d~~~~ 570 (1137)
.+|+|||||.+++.||.+||.+|+| .+++.+|+|....+..... ........++|||||||+++.++.
T Consensus 286 ~~~~LIV~P~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--- 360 (800)
T 3mwy_W 286 NGPHIIVVPLSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--- 360 (800)
T ss_dssp CSCEEEECCTTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH---
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH---
Confidence 4799999999999999999999997 8999999998654311000 001134467899999999998864
Q ss_pred CCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhh
Q 001153 571 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1137)
Q Consensus 571 ~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1137)
..|..+.|++||+||||++||..|+.++++..+++.+||+|||||++|++.|||++++|
T Consensus 361 ---------------------~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~f 419 (800)
T 3mwy_W 361 ---------------------AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNF 419 (800)
T ss_dssp ---------------------HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHH
T ss_pred ---------------------HHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 001153 651 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1137)
Q Consensus 651 L~p~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1137)
|.|+.|+....|..... .......+..|+.+++|+|+||+|.+|... ||++.+.+++|+||+.|+.+|+.+....
T Consensus 420 L~p~~~~~~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~ 494 (800)
T 3mwy_W 420 LMPGRFTIDQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKN 494 (800)
T ss_dssp HCSCCC---------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHC
T ss_pred hCccccCchhhhccccc---chhHHHHHHHHHHHHhHHHhhhhHHhhhhc--cCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999987766532211 112234577899999999999999999765 9999999999999999999999876543
Q ss_pred HhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc----CCCCCH---
Q 001153 731 VGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ----QSPLSM--- 803 (1137)
Q Consensus 731 ~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~----~~~~t~--- 803 (1137)
...... + .......+++.+++|||+|+||.+......... ....+.
T Consensus 495 ~~~l~~---------------------~------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 495 YSALTA---------------------G------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CC-------------------------------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred HHHHhh---------------------c------cccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 221110 0 001123589999999999999998754332211 111111
Q ss_pred ----------HHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHH---HH--HHHHHHHHHhhhcCCCC
Q 001153 804 ----------DEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVEEHSEDFRLDPL 868 (1137)
Q Consensus 804 ----------eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y---~~--~l~~~~~~~~~f~~D~~ 868 (1137)
-.+|..++.++. +.++++|||+|++.++++|+..+......| .+ ....+++.++.|+....
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~----~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLK----KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHhhhcChHHHHHHHHHHHHh----hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 123444554443 345899999999999999999887653332 22 23577888889987332
Q ss_pred c---Ce-----------------eEEecCCcCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhccccc
Q 001153 869 L---NI-----------------HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1137)
Q Consensus 869 ~---~l-----------------h~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~~~~ 927 (1137)
. .| .++++. +|||+.+.||+ |||||||+++|.||||++++|+||+|.+++++|.....
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~ 702 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDS-DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEY 702 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSC-CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC
T ss_pred CceEEEEecccccCCCCccccceEEEecC-CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 1 11 334444 69999999999 99999999999999999999999999999999886544
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-59 Score=579.65 Aligned_cols=372 Identities=15% Similarity=0.199 Sum_probs=279.5
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCccccccc--ccc-hhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDT--SIM-DISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~--~~~-~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
.+++|||||.+++.||.+||.+|++. .+.++.++|......... ... .......++|+||||++++++..
T Consensus 114 ~~~~LiV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~------ 186 (644)
T 1z3i_X 114 IDKVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE------ 186 (644)
T ss_dssp CSCEEEEECHHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT------
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH------
Confidence 46899999999999999999999863 466666665432110000 000 00011258999999999998642
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCC
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1137)
.|....|++||+||||++||..++.++++..+++.+||+|||||+||++.|||++++||+|+
T Consensus 187 ------------------~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~ 248 (644)
T 1z3i_X 187 ------------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSG 248 (644)
T ss_dssp ------------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHH
T ss_pred ------------------HhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCC
Confidence 36677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhcCCCCCCC------------cchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHH
Q 001153 655 PFSISRWWIEVIRDPYENGD------------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHF 722 (1137)
Q Consensus 655 ~f~~~~~F~~~~~~pi~~~~------------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~l 722 (1137)
+|++...|.+.|..|+..+. ...+..|+.+++++|+||+|.++... ||++.+.+++|+||+.|+++
T Consensus 249 ~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~l 326 (644)
T 1z3i_X 249 ILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKEL 326 (644)
T ss_dssp HHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHHH
T ss_pred cCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhh--CCCceEEEEEeCCCHHHHHH
Confidence 99999999999988765421 13467899999999999999999776 99999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccc-------cc
Q 001153 723 YQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGL-------RS 795 (1137)
Q Consensus 723 Y~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~-------~~ 795 (1137)
|+.+.+.... .... ..+ .....++..+++|||+||||.+..... ..
T Consensus 327 Y~~~~~~~~~--------------~~~~-----~~g--------~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~ 379 (644)
T 1z3i_X 327 YKLFLKQAKP--------------VESL-----QTG--------KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDG 379 (644)
T ss_dssp HHHHHHHHCG--------------GGSS-----CTT--------CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTT
T ss_pred HHHHHHHHHH--------------HHHH-----hcC--------ccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhh
Confidence 9987653211 0000 000 012467899999999999998753211 00
Q ss_pred ----ccC---------CCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhH---HHHH--HHHHH
Q 001153 796 ----LQQ---------SPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEA--MAVVE 857 (1137)
Q Consensus 796 ----~~~---------~~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~---y~~~--l~~~~ 857 (1137)
... .......++..++..++.. ..+++|||+|++.++++|+..+...... +.+. ...++
T Consensus 380 ~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~---~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~ 456 (644)
T 1z3i_X 380 ALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTT---TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRA 456 (644)
T ss_dssp GGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHH---CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHH
T ss_pred HHhhccccccccccCcccChHHHHHHHHHHHHhhc---CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHH
Confidence 000 0011224566666655432 3489999999999999999987654322 2222 34677
Q ss_pred HHHhhhcCCCCc---Ce-----------------eEEecCCcCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccch
Q 001153 858 EHSEDFRLDPLL---NI-----------------HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1137)
Q Consensus 858 ~~~~~f~~D~~~---~l-----------------h~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~ 916 (1137)
+.+++|+.+... .+ .+++++ +|||+.+.||+ |+||+||+++|.|||+++++|+||+|.
T Consensus 457 ~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~-~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~ 535 (644)
T 1z3i_X 457 KIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP-DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIL 535 (644)
T ss_dssp HHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC-CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC-CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHH
Confidence 888888876432 11 233344 69999999999 999999999999999999999999999
Q ss_pred hHhhhhccccc
Q 001153 917 NARKCQRVSRE 927 (1137)
Q Consensus 917 ~~~k~~~~~~~ 927 (1137)
+++.+|+-...
T Consensus 536 ~~~~~K~~l~~ 546 (644)
T 1z3i_X 536 QRQAHKKALSS 546 (644)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHHH
Confidence 99988875543
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=9.9e-56 Score=530.06 Aligned_cols=357 Identities=23% Similarity=0.312 Sum_probs=279.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.+++|||||.+++.||.+||.+|++ .+++.+|+|.... .....+|||||||+++.++.
T Consensus 86 ~~~~LIv~P~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~----------~~~~~~~ivi~t~~~l~~~~---------- 143 (500)
T 1z63_A 86 LTPSLVICPLSVLKNWEEELSKFAP--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT---------- 143 (500)
T ss_dssp CSSEEEEECSTTHHHHHHHHHHHCT--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH----------
T ss_pred CCCEEEEccHHHHHHHHHHHHHHCC--CceEEEEecCchh----------ccccCCcEEEeeHHHHhccc----------
Confidence 3689999999999999999999997 7999999987532 23467899999999998753
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
.+....|++||+||||+++|..++.++++..+++.+||+|||||++|++.|||++++||+|++|+
T Consensus 144 ---------------~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~ 208 (500)
T 1z63_A 144 ---------------RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLG 208 (500)
T ss_dssp ---------------HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTC
T ss_pred ---------------hhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCC
Confidence 25667899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHH
Q 001153 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1137)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~ 737 (1137)
+...|.+.|..|+..++....+.|+.+++++++||+|.+......||++.+.+++++|++.|+.+|+.+.+.....
T Consensus 209 ~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~---- 284 (500)
T 1z63_A 209 SYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNN---- 284 (500)
T ss_dssp CHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTT----
T ss_pred CHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHH----
Confidence 9999999999888888878888999999999999999874323459999999999999999999999876542211
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHh
Q 001153 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 817 (1137)
Q Consensus 738 l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~~~~~e 817 (1137)
+. . .........++..+++|||+|+||.+...+..... ....-+.+..++.+...+
T Consensus 285 -------~~---------~------~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~--~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 285 -------ID---------S------VTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVR--RSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp -------TT---------T------CCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCST--TCHHHHHHHHHHHHHHTT
T ss_pred -------HH---------h------hhcccchHHHHHHHHHHHHHhCCHHHhcCccchhh--cchhHHHHHHHHHHHHcc
Confidence 00 0 00123356789999999999999998654322111 111223444455444333
Q ss_pred hhhhcchHHHHHhHHHHHHHHHHhhhhh-h---hHHHHH--HHHHHHHHhhhcCCCCc-------------------Cee
Q 001153 818 GEEALRKLVMALNGLAGIALIEKNLSQA-V---SLYKEA--MAVVEEHSEDFRLDPLL-------------------NIH 872 (1137)
Q Consensus 818 ~eea~rkvLifsq~~a~L~iLe~~l~~a-~---~~y~~~--l~~~~~~~~~f~~D~~~-------------------~lh 872 (1137)
.++++||+|+..++++|...+... . ..+.+. ...+++.++.|+.++.. ...
T Consensus 341 ----~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 341 ----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp ----TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred ----CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 489999999999999999887653 1 112222 24666777777665311 112
Q ss_pred EEecCCcCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhcc
Q 001153 873 LHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1137)
Q Consensus 873 ~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~ 924 (1137)
+++++ +|||+...||. |+||+||+++|.||++++++|+||.+.+++.+|+-
T Consensus 417 i~~d~-~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~ 468 (500)
T 1z63_A 417 IHFDR-WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRS 468 (500)
T ss_dssp EESSC-CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSS
T ss_pred EEeCC-CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 33333 69999999999 99999999999999999999999999999988763
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.8e-35 Score=375.14 Aligned_cols=347 Identities=14% Similarity=0.138 Sum_probs=235.6
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 499 ~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
+++|||||.+|+.||..||.+++ ++++.+|+|...... .......+..++|||+||+++.++...
T Consensus 201 ~rvLIVvP~sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~---~~~~~~~~~~~dIvI~T~~~L~~~~~~--------- 265 (968)
T 3dmq_A 201 ERVLIIVPETLQHQWLVEMLRRF---NLRFALFDDERYAEA---QHDAYNPFDTEQLVICSLDFARRSKQR--------- 265 (968)
T ss_dssp CCEEEECCTTTHHHHHHHHHHHS---CCCCEECCHHHHHHH---HHTTCSSSTTCSEEEECHHHHHTSTTT---------
T ss_pred CeEEEEeCHHHHHHHHHHHHHHh---CCCEEEEccchhhhh---hhhcccccccCCEEEEcHHHHhhCHHH---------
Confidence 58999999999999999998888 588888887643210 000123445789999999999875321
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHH---HHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhhccC
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA---ATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~---~~kal~~L--~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1137)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++|+.|
T Consensus 266 ------------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p 333 (968)
T 3dmq_A 266 ------------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDP 333 (968)
T ss_dssp ------------THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCT
T ss_pred ------------HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCc
Confidence 12356678999999999999987754 48888888 68889999999999999999999999999
Q ss_pred CCCCchhhhhhhhcC---------------CCCC----------------------------CCcchHHHHHHHH-----
Q 001153 654 SPFSISRWWIEVIRD---------------PYEN----------------------------GDVGAMEFTHKFF----- 685 (1137)
Q Consensus 654 ~~f~~~~~F~~~~~~---------------pi~~----------------------------~~~~~~~~L~~lL----- 685 (1137)
+.|++...|...+.. +... ........+..++
T Consensus 334 ~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~ 413 (968)
T 3dmq_A 334 NRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGT 413 (968)
T ss_dssp TTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTT
T ss_pred cccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCc
Confidence 999998777644210 0000 0001122333333
Q ss_pred hhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccc
Q 001153 686 KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIIT 765 (1137)
Q Consensus 686 ~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~ 765 (1137)
..+++|+++..+. .+|++....+.+++++.++..|+..... .+ .....
T Consensus 414 ~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~~~~~~~~~~-----------------~~--------~~~~~---- 461 (968)
T 3dmq_A 414 SRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQTAIKVSGIM-----------------GA--------RKSAE---- 461 (968)
T ss_dssp TTTEECCCTTTCC---CCCCCCCCEEEECCCHHHHHHHHHHHHT-----------------TC--------CSSGG----
T ss_pred chhhhhhhhhhhc---ccChhheEeeecCCCHHHHHHHHHHhhh-----------------hh--------hhhhH----
Confidence 3467788887774 4899999999999999999988742110 00 00000
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCcccccccCC---CCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhh
Q 001153 766 HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS---PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNL 842 (1137)
Q Consensus 766 ~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~---~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l 842 (1137)
.....|.+|......+...... .....+.+..++.. ....+++||++....++.|...+
T Consensus 462 ------------~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~------~~~~k~iVF~~~~~~~~~l~~~L 523 (968)
T 3dmq_A 462 ------------DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS------HRSQKVLVICAKAATALQLEQVL 523 (968)
T ss_dssp ------------GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH------TSSSCCCEECSSTHHHHHHHHHH
T ss_pred ------------HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh------CCCCCEEEEeCcHHHHHHHHHHH
Confidence 0011233454433222211101 11122334444432 23479999999999999999888
Q ss_pred hhh----hhHHHHHH--HHHHHHHhhhcCCC--C---------------cCe--eEEecCCcCCcchhhhhh-hhhhcCC
Q 001153 843 SQA----VSLYKEAM--AVVEEHSEDFRLDP--L---------------LNI--HLHHNLTEILPMVANCAT-ELSQNEQ 896 (1137)
Q Consensus 843 ~~a----~~~y~~~l--~~~~~~~~~f~~D~--~---------------~~l--h~~~Nl~dwnp~~d~QA~-r~~riGQ 896 (1137)
... +..+.+.+ ..++...+.|+.+. . +.+ .+++++ +|||....|+. |++|+||
T Consensus 524 ~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~-p~~~~~~~Q~~GR~~R~Gq 602 (968)
T 3dmq_A 524 REREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL-PFNPDLLEQRIGRLDRIGQ 602 (968)
T ss_dssp HTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC-CSSHHHHHHHHHTTSCSSS
T ss_pred HHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC-CCCHHHHHHHhhccccCCC
Confidence 742 22233322 35666777777664 2 112 333444 59999999999 9999999
Q ss_pred CCceEEEEcccCCcccccchhHhhhhc
Q 001153 897 HFPGCSEKAFKIHSIETCDENARKCQR 923 (1137)
Q Consensus 897 ~~~v~v~rl~~~~tiee~i~~~~k~~~ 923 (1137)
++.|.+|++++++|++|.|.+..++|.
T Consensus 603 ~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 603 AHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp CSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred CceEEEEEecCCChHHHHHHHHHHhCC
Confidence 999999999999999999999986643
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=6.9e-28 Score=282.52 Aligned_cols=362 Identities=11% Similarity=0.034 Sum_probs=207.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+++|||||. +|+.||.+|+.+|+..+..++.+++|...... .......++|+|+||+++...+..
T Consensus 53 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~~~~~~~ivv~T~~~l~~~~~~-------- 118 (494)
T 1wp9_A 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE------RSKAWARAKVIVATPQTIENDLLA-------- 118 (494)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHH------HHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhh------hhhhccCCCEEEecHHHHHHHHhc--------
Confidence 589999998 79999999999998433569999999754321 122345789999999999986532
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHH--HHHHH-HhccCeEEEEeccCCCCChhhhHhhhhhccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA--TEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~--~kal~-~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1137)
..+....|++||+||||++++..+.. .+.+. ..+..++|+|||||. |+..+++.++.++...
T Consensus 119 --------------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 119 --------------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp --------------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred --------------CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChh
Confidence 12345579999999999999753222 22222 235788999999999 7788888888888765
Q ss_pred CCCchh---hhhhhhcCCCCC-----CCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 001153 655 PFSISR---WWIEVIRDPYEN-----GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1137)
Q Consensus 655 ~f~~~~---~F~~~~~~pi~~-----~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1137)
.+.... .+...+..+... ..+.....+...+.+++.++.+...... -+++.. ..++..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~ 257 (494)
T 1wp9_A 184 HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG-LLESSS-----PDIPKKEVLRAGQI 257 (494)
T ss_dssp EEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT-SSSCCC-----TTSCHHHHHHHHHH
T ss_pred eeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc-cccccC-----CCcchhHHHHHHHH
Confidence 432211 111111111100 1123455566667777777766554332 133332 12332222111111
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCc---------------ccchhhHHHHHHHHHHHHHHcCCCCCCCc
Q 001153 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNP---------------IITHAEAAKLLNSLLKLRQACCHPQVGSS 791 (1137)
Q Consensus 727 ~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~---------------~~~~~~~~~iL~~L~rLRQiC~HP~L~~~ 791 (1137)
... .+.... ...... .+.......+...+..|+..|.|+.....
T Consensus 258 ~~~--------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 258 INE--------------EMAKGN-------HDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp HHH--------------HHTTTC-------CSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHH--------------Hhhccc-------cchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence 000 000000 000000 00011122345556666666666322100
Q ss_pred c-------cccc---------cCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhh---hHHHH-
Q 001153 792 G-------LRSL---------QQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAV---SLYKE- 851 (1137)
Q Consensus 792 ~-------~~~~---------~~~~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~---~~y~~- 851 (1137)
. +... .......-+.+..++.+.... ...+++|||+++..+++.|.+.+.... ..+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~ 394 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ 394 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecc
Confidence 0 0000 000111122333344333211 234899999999999999999887641 22222
Q ss_pred -------H--HHHHHHHHhhhcCCCCc-----------------CeeEEecCCcCCcchhhhhh-hhhhcCCCCceEEEE
Q 001153 852 -------A--MAVVEEHSEDFRLDPLL-----------------NIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEK 904 (1137)
Q Consensus 852 -------~--l~~~~~~~~~f~~D~~~-----------------~lh~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~r 904 (1137)
. ...+++..+.|+.+... ...+++++ +|||+...|+. ||+|.|| +.+|+
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~-~~~~~~~~Qr~GR~~R~g~---g~~~~ 470 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP-VPSAIRSIQRRGRTGRHMP---GRVII 470 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC-CHHHHHHHHHHTTSCSCCC---SEEEE
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC-CCCHHHHHHHHhhccCCCC---ceEEE
Confidence 2 23566667777665532 12334444 59999999999 9999998 89999
Q ss_pred cccCCcccccchhHhhhh
Q 001153 905 AFKIHSIETCDENARKCQ 922 (1137)
Q Consensus 905 l~~~~tiee~i~~~~k~~ 922 (1137)
+++++|+||++...+.+|
T Consensus 471 l~~~~t~ee~~~~~~~~k 488 (494)
T 1wp9_A 471 LMAKGTRDEAYYWSSRQK 488 (494)
T ss_dssp EEETTSHHHHHHHHCC--
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 999999999998888654
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=2.1e-25 Score=265.22 Aligned_cols=309 Identities=14% Similarity=0.094 Sum_probs=185.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCe-EEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~-V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+++|||||. +|+.||.+++.+| +++ +.+++|.... ..+|+|+||+.+.....
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~-------- 187 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAE-------- 187 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC--------------CCSEEEEEHHHHHHTHH--------
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC--------------cCCEEEEEcHHHHHHHH--------
Confidence 479999999 8999999999995 477 8899886532 36899999999887532
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1137)
.+ .-.|++||+||||++.+.... +.+..+.+.++++|||||.++.-.+
T Consensus 188 ----------------~~-~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------- 235 (472)
T 2fwr_A 188 ----------------KL-GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------- 235 (472)
T ss_dssp ----------------HH-TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG-------------
T ss_pred ----------------Hh-cCCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEEEecCccCCCCHH-------------
Confidence 11 125899999999999987643 3556678899999999999754211
Q ss_pred CchhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHH
Q 001153 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1137)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~ 736 (1137)
..+..++.+.+.+....++... -+++.....+.+++++.++..|+.+......
T Consensus 236 ----------------------~~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 288 (472)
T 2fwr_A 236 ----------------------EILKEVVGGKVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ---- 288 (472)
T ss_dssp ----------------------GSHHHHTCCEEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----
T ss_pred ----------------------HHHHHHhCCeEeecCHHHHhcC-cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHH----
Confidence 1134455555666655555332 2788888889999999999999876443211
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccCcccc----hhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHH
Q 001153 737 VIQRLKDNILKRNVPGHASSDALYNPIIT----HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIG 812 (1137)
Q Consensus 737 ~l~~~~~~~~~r~~~g~~~~~~~~~~~~~----~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~ 812 (1137)
.....-.......+. ...+. .......+....+.++++++.. ...+.+..++.
T Consensus 289 --------~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~k~~~l~~~l~ 345 (472)
T 2fwr_A 289 --------FLRARGITLRRAEDF-NKIVMASGYDERAYEALRAWEEARRIAFNSK--------------NKIRKLREILE 345 (472)
T ss_dssp --------CSSSCCCTTTCCSSS-TTTTTTTCCSSSSSTTTHHHHHHHHHHHSCS--------------HHHHHHHHHHH
T ss_pred --------HHHhcCccccchhhH-HHHHHHhccCHHHHHHHHHHHHHHHHhhcCh--------------HHHHHHHHHHH
Confidence 111000000000000 00000 0000001111222333332211 01133344443
Q ss_pred HHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhcCCCC-----------------cCeeEEe
Q 001153 813 KTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-----------------LNIHLHH 875 (1137)
Q Consensus 813 ~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~l~~~~~~~~~f~~D~~-----------------~~lh~~~ 875 (1137)
+ ...+++|||++....++.|.+.+.............+++..+.|+.+.. ..+.+.+
T Consensus 346 ~------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~ 419 (472)
T 2fwr_A 346 R------HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIM 419 (472)
T ss_dssp H------TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEE
T ss_pred h------CCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEE
Confidence 2 2348999999999999999988754332222122234444444443222 2234555
Q ss_pred cCCcCCcchhhhhh-hhhhcCCC-CceEEEEcccCCcccccchhHhhhh
Q 001153 876 NLTEILPMVANCAT-ELSQNEQH-FPGCSEKAFKIHSIETCDENARKCQ 922 (1137)
Q Consensus 876 Nl~dwnp~~d~QA~-r~~riGQ~-~~v~v~rl~~~~tiee~i~~~~k~~ 922 (1137)
+.. |+|+...|+. ||+|+||. +.|.+|.+++++|+||.+.+..++|
T Consensus 420 ~~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~ 467 (472)
T 2fwr_A 420 SGS-GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNA 467 (472)
T ss_dssp CCS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----------
T ss_pred CCC-CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHh
Confidence 554 9999999999 99999999 8999999999999999987666543
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.88 E-value=3.5e-23 Score=229.87 Aligned_cols=203 Identities=16% Similarity=0.144 Sum_probs=122.0
Q ss_pred hhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhh
Q 001153 689 MCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAE 768 (1137)
Q Consensus 689 mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~ 768 (1137)
-+||+|++|..+ |||+.+.+++|+||+.|+++|+.+.+.....+ . . .. ....
T Consensus 13 ~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~-----------~-~-------~~-------~~~~ 64 (271)
T 1z5z_A 13 GLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNI-----------D-S-------VT-------GIKR 64 (271)
T ss_dssp -----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT-----------T-T-------CC-------HHHH
T ss_pred cccccHHHHHhh--CCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHH-----------H-h-------cc-------ccch
Confidence 589999999776 99999999999999999999998865432211 0 0 00 0123
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhh-h-
Q 001153 769 AAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA-V- 846 (1137)
Q Consensus 769 ~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a-~- 846 (1137)
...+++.|++|||+||||.+...... .. .....-+.|..++.++...+ +++|||+|+..++++|+..+... .
T Consensus 65 ~~~~l~~l~~Lrq~~~hP~l~~~~~~-~~-~~s~K~~~L~~ll~~~~~~~----~kvlIFs~~~~~~~~l~~~L~~~~g~ 138 (271)
T 1z5z_A 65 KGMILSTLLKLKQIVDHPALLKGGEQ-SV-RRSGKMIRTMEIIEEALDEG----DKIAIFTQFVDMGKIIRNIIEKELNT 138 (271)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHCSCC-CS-TTCHHHHHHHHHHHHHHHTT----CCEEEEESCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCCcc-cc-ccCHHHHHHHHHHHHHHhCC----CeEEEEeccHHHHHHHHHHHHHhcCC
Confidence 45789999999999999998653211 11 11223355666666655444 89999999999999999988653 1
Q ss_pred --hHHHHH--HHHHHHHHhhhcCCCCcC-------------------eeEEecCCcCCcchhhhhh-hhhhcCCCCceEE
Q 001153 847 --SLYKEA--MAVVEEHSEDFRLDPLLN-------------------IHLHHNLTEILPMVANCAT-ELSQNEQHFPGCS 902 (1137)
Q Consensus 847 --~~y~~~--l~~~~~~~~~f~~D~~~~-------------------lh~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v 902 (1137)
..+.+. ...+++.++.|+.++-.. ..++|++ +|||+.+.||. |+||+||+++|.|
T Consensus 139 ~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~-~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 139 EVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp CCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSC-CSCTTTC--------------CCEE
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECC-CCChhHHHHHHHhccccCCCCceEE
Confidence 112222 346777778887663211 1334444 59999999999 9999999999999
Q ss_pred EEcccCCcccccchhHhhhhcccc
Q 001153 903 EKAFKIHSIETCDENARKCQRVSR 926 (1137)
Q Consensus 903 ~rl~~~~tiee~i~~~~k~~~~~~ 926 (1137)
|++++++|+||+|.+++++|.-..
T Consensus 218 ~~li~~~TiEe~i~~~~~~K~~l~ 241 (271)
T 1z5z_A 218 HKLISVGTLEEKIDQLLAFKRSLF 241 (271)
T ss_dssp EEEEETTSHHHHHHHHHHHCHHHH
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998876443
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.83 E-value=5.5e-20 Score=236.38 Aligned_cols=123 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+++|||||.. |+.||.+++.++++..++++.+++|....... .......+||||+||+.|...+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~-----~~~~~~~~~IvI~Tp~~L~~~l~~~------ 364 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C-----CHHHHHHCSEEEECHHHHHHHHHSS------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhH-----HHHhccCCCEEEecHHHHHHHHHcC------
Confidence 36899999975 89999999999987557999999997643211 1122356899999999998865320
Q ss_pred chhhhhhcccCCCcchhc-cccceeEEEecccccccChhHHHHHHHHHhc--------cCeEEEEeccCCCCChhhhHhh
Q 001153 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~IKN~~S~~~kal~~L~--------a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
.+ ..-.|++||+||||++.+..+....+...+. ..++++|||||.+++..++..+
T Consensus 365 ----------------~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~ 428 (936)
T 4a2w_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (936)
T ss_dssp ----------------SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------ccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHH
Confidence 11 2345889999999999987652222212222 2679999999998776555443
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=4.3e-19 Score=213.25 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=85.5
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+++|||||. .|+.||.+++.++++..++++..++|....... .......++|+|+|++.+...+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~------- 119 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS-----VQHIIEDNDIIILTPQILVNNLNN------- 119 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC-----HHHHHHHCSEEEECHHHHHHHHHT-------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh-----HHHHhcCCCEEEECHHHHHHHHhc-------
Confidence 3579999999 799999999999986557899999997643211 112234689999999999886532
Q ss_pred chhhhhhcccCCCcchhc-cccceeEEEecccccccChhHHHHHHHHHh---------ccCeEEEEeccCCCCChhhh
Q 001153 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRL---------YAKHRWCITGTPIQRKLDDL 644 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~IKN~~S~~~kal~~L---------~a~~RwlLTGTPiqN~l~DL 644 (1137)
..+ ..-.|.+||+||||++.+..+....+...+ ....+++|||||.+++..++
T Consensus 120 ---------------~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~ 182 (555)
T 3tbk_A 120 ---------------GAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTA 182 (555)
T ss_dssp ---------------SSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSH
T ss_pred ---------------CcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccH
Confidence 012 234688999999999988764332222222 22479999999999874443
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.81 E-value=8.9e-19 Score=210.98 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=81.4
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+.+|||||. .|+.||.+++.++++..++++..++|....... .......++|+|+|++.+...+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~------- 122 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFED------- 122 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C-----HHHHHHHCSEEEECHHHHHHHHHS-------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchh-----HHHhhCCCCEEEECHHHHHHHHHh-------
Confidence 3579999998 799999999999986547899999987643211 112234689999999999886532
Q ss_pred chhhhhhcccCCCcchhc-cccceeEEEecccccccChhHHHHHHHHHh--------ccCeEEEEeccCCCCChh
Q 001153 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRL--------YAKHRWCITGTPIQRKLD 642 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~IKN~~S~~~kal~~L--------~a~~RwlLTGTPiqN~l~ 642 (1137)
..+ ..-.|++||+||||++.+......-+...+ +..++++|||||.+++..
T Consensus 123 ---------------~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~ 182 (556)
T 4a2p_A 123 ---------------GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAK 182 (556)
T ss_dssp ---------------SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCS
T ss_pred ---------------CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchh
Confidence 012 234688999999999987764222111222 236799999999987643
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.81 E-value=4.8e-19 Score=224.33 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=83.9
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+++|||||. .|+.||.+++.++++..++++..++|....... .......++|||+||+.+...+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Ivv~Tp~~l~~~l~~------- 363 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFED------- 363 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C-----HHHHHHTCSEEEECHHHHHHHHHS-------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhh-----HHHhhCCCCEEEEchHHHHHHHHh-------
Confidence 3689999997 589999999999986547899999997643211 122335789999999999886532
Q ss_pred chhhhhhcccCCCcchhc-cccceeEEEecccccccChhHHHHHHHHHhc--------cCeEEEEeccCCCCChhhhHh
Q 001153 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~IKN~~S~~~kal~~L~--------a~~RwlLTGTPiqN~l~DL~s 646 (1137)
..+ ..-.|.+||+||||++.+..+....+...+. ..++++|||||.+++..++..
T Consensus 364 ---------------~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~ 427 (797)
T 4a2q_A 364 ---------------GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427 (797)
T ss_dssp ---------------SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHH
T ss_pred ---------------ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHH
Confidence 012 2346899999999999987542222112222 257999999999876544443
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.79 E-value=1.1e-18 Score=209.35 Aligned_cols=119 Identities=11% Similarity=0.130 Sum_probs=86.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+++|||||. +|..||.+++.++...+..++..++|...... ......+|+|+||+.+.+...
T Consensus 158 ~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~I~i~T~~~l~~~~~--------- 220 (510)
T 2oca_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD--------KYKNDAPVVVGTWQTVVKQPK--------- 220 (510)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTG--------GGCTTCSEEEEEHHHHTTSCG---------
T ss_pred CeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCcccc--------ccccCCcEEEEeHHHHhhchh---------
Confidence 489999998 68899999999985433578888887644311 133568999999998876411
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEeccCCCCChhhhHhhhhhccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1137)
..--.|.+||+||+|++.+. ...+.+..+ .+.++++||||| .+...+++.+..++++
T Consensus 221 ----------------~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~ 278 (510)
T 2oca_A 221 ----------------EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGE 278 (510)
T ss_dssp ----------------GGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCS
T ss_pred ----------------hhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCC
Confidence 11236899999999999873 233444566 677899999999 6666677777766655
No 13
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.79 E-value=2.5e-20 Score=209.15 Aligned_cols=194 Identities=10% Similarity=-0.049 Sum_probs=120.8
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 001153 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1137)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQi 782 (1137)
-|++.|++++++||+.|+++|+.+.......+.+.+.. . ... +..-..++.+.+++||++
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~-------~--------~~~-----~~~~~~sl~nli~qLRki 79 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFET-------S--------HYK-----EDVILESMKTMCLNGSLV 79 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHT-------T--------TTC-----CHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhc-------C--------CCc-----cchHHHHHHHHHHHHHHH
Confidence 49999999999999999999999876544433332211 0 000 011245788999999999
Q ss_pred cCCCCCCCcccccccCCCC----------CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHHHHH
Q 001153 783 CCHPQVGSSGLRSLQQSPL----------SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA 852 (1137)
Q Consensus 783 C~HP~L~~~~~~~~~~~~~----------t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y~~~ 852 (1137)
||||+|+............ ..-.+|+.|+.+++. ..|++|+|||++.+|++||+.+......|.+.
T Consensus 80 cnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~----~~~kVLIfsq~t~~LDilE~~l~~~~~~y~Rl 155 (328)
T 3hgt_A 80 ATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQE----YETETAIVCRPGRTMDLLEALLLGNKVHIKRY 155 (328)
T ss_dssp HHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTT----SCEEEEEEECSTHHHHHHHHHHTTSSCEEEES
T ss_pred cCChhhhccccCCccccccchhhHHHHcCccHHHHHHHHHHHHh----CCCEEEEEECChhHHHHHHHHHhcCCCceEeC
Confidence 9999997432211110111 112467777777654 44999999999999999999887654444333
Q ss_pred HH---HHHHHHhhhc-------CCC------------CcCeeEEecCCcCCcchh-hhhh-hhhhc--CCCCceEEEEcc
Q 001153 853 MA---VVEEHSEDFR-------LDP------------LLNIHLHHNLTEILPMVA-NCAT-ELSQN--EQHFPGCSEKAF 906 (1137)
Q Consensus 853 l~---~~~~~~~~f~-------~D~------------~~~lh~~~Nl~dwnp~~d-~QA~-r~~ri--GQ~~~v~v~rl~ 906 (1137)
.+ ..+.....+. ... -....+.++- +|||++| .||+ ||||| ||+++|.||||+
T Consensus 156 DG~~~~~~~k~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~Ds-dwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLv 234 (328)
T 3hgt_A 156 DGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDT-TVDTSQKDIQYLLQYKRERKGLERYAPIVRLV 234 (328)
T ss_dssp SSCCC-------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECST-TCCTTSHHHHHHHCCC---------CCEEEEE
T ss_pred CCCchhhhhhcccCCceEEEEECCCCCCcCcccccCCCCCEEEEECC-CCCCCChHHHHHHHHhhhccCCCCcceEEEEe
Confidence 22 1111110000 000 0011222222 7999999 8999 99999 789999999999
Q ss_pred cCCcccccchhHhhh
Q 001153 907 KIHSIETCDENARKC 921 (1137)
Q Consensus 907 ~~~tiee~i~~~~k~ 921 (1137)
+.+||||.+++..|.
T Consensus 235 t~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 235 AINSIDHCRLFFGKK 249 (328)
T ss_dssp ETTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHccCC
Confidence 999999999999886
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.74 E-value=3.2e-17 Score=203.95 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=91.2
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+++|||+|. +|+.||.+++.++++..++++..++|....... .......++|+|+|++.|.+.+..
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Iiv~Tp~~L~~~l~~-------- 128 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDIIILTPQILVNNLKK-------- 128 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSC-----HHHHHHTCSEEEECHHHHHHHHHT--------
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCcccccc-----HHHhccCCCEEEECHHHHHHHHhc--------
Confidence 589999997 899999999999986557899999987543211 112234689999999999887532
Q ss_pred hhhhhhcccCCCcchhc-cccceeEEEecccccccChhHHHHHHHHHh---------ccCeEEEEeccCCCCC-------
Q 001153 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRL---------YAKHRWCITGTPIQRK------- 640 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~IKN~~S~~~kal~~L---------~a~~RwlLTGTPiqN~------- 640 (1137)
..+ ..-.|.+||+||||++++..+....+...+ ...++++|||||..++
T Consensus 129 --------------~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~ 194 (696)
T 2ykg_A 129 --------------GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEA 194 (696)
T ss_dssp --------------TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHH
T ss_pred --------------CcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHH
Confidence 112 234689999999999987764333332222 3478999999999543
Q ss_pred hhhhHhhhhhccCC
Q 001153 641 LDDLYGLLRFLKSS 654 (1137)
Q Consensus 641 l~DL~sLL~FL~p~ 654 (1137)
+.+++.++..++..
T Consensus 195 ~~~i~~~~~~l~~~ 208 (696)
T 2ykg_A 195 LDYICKLCASLDAS 208 (696)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCc
Confidence 45666666655543
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.70 E-value=1.3e-16 Score=195.16 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCcEEEEeC-CchhHHHH-HHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 498 TGATLIVCP-APILAQWD-AEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 498 ~~~tLIV~P-~SLl~QW~-~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.+++||||| .+|+.||. +++..|.. .+..+.+.. ....++|+|+||+.|.......
T Consensus 235 ~~~vlil~P~~~L~~Q~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~I~v~T~~~l~~~~~~~----- 292 (590)
T 3h1t_A 235 KPRILFLADRNVLVDDPKDKTFTPFGD----ARHKIEGGK-------------VVKSREIYFAIYQSIASDERRP----- 292 (590)
T ss_dssp CCCEEEEEC-----------CCTTTCS----SEEECCC---------------CCSSCSEEEEEGGGC------C-----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcch----hhhhhhccC-------------CCCCCcEEEEEhhhhccccccc-----
Confidence 468999999 57889999 88887753 233333221 1245799999999988753210
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1137)
.....+..-.|++||+||||++.+.. +...+.+..+...++++|||||..+...+++.++
T Consensus 293 -------------~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f 353 (590)
T 3h1t_A 293 -------------GLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYF 353 (590)
T ss_dssp -------------CGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHS
T ss_pred -------------cccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHc
Confidence 00012334568999999999998764 3444555667788999999999998877766665
No 16
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.69 E-value=6.4e-17 Score=179.71 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=86.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+++|||||. +|+.||.+++.++.......+..+.|..... .......+|+|+||+.+.+...
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~I~v~T~~~l~~~~~--------- 220 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKD--------DKYKNDAPVVVGTWQTVVKQPK--------- 220 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSST--------TCCCTTCSEEEECHHHHTTSCG---------
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcch--------hhhccCCcEEEEchHHHHhhHH---------
Confidence 479999998 6889999999999754445666655543321 1233568999999999876421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEeccCCCCChhhhHhhhhhccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1137)
...-.|++||+||||++.+. .....+..+ +..++++|||||. |...+++.++.+++|
T Consensus 221 ----------------~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 221 ----------------EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp ----------------GGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred ----------------HHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 11235799999999999854 444455555 6889999999995 556888888887765
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.63 E-value=3.8e-15 Score=185.38 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=84.6
Q ss_pred CcEEEEeCCc-hhHHH-HHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQW-DAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW-~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+++|||||.. |+.|| .+++.++++. .+++..++|....... ........+|+|+|++.|...+......
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~-----~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~--- 127 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKIS-----FPEVVKSCDIIISTAQILENSLLNLENG--- 127 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCC-----HHHHHHSCSEEEEEHHHHHHHTC--------
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhH-----HHhhhcCCCEEEECHHHHHHHHhccccc---
Confidence 6899999975 88999 9999999873 4999999997643211 1223367999999999999865321100
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh---HHHHHHHHH-h-------------ccCeEEEEeccCCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMALR-L-------------YAKHRWCITGTPIQR 639 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~---S~~~kal~~-L-------------~a~~RwlLTGTPiqN 639 (1137)
....+....|.+||+||||++.+.. ......+.. + +....++|||||..+
T Consensus 128 -------------~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 128 -------------EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp ----------------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCC
T ss_pred -------------cccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEeccccccc
Confidence 0012344578999999999985533 111111111 1 446799999999997
Q ss_pred Ch-------hhhHhhhhhccC
Q 001153 640 KL-------DDLYGLLRFLKS 653 (1137)
Q Consensus 640 ~l-------~DL~sLL~FL~p 653 (1137)
+. .++..++..+++
T Consensus 195 ~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 195 GATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp SCCSHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHhhcCC
Confidence 43 344555556665
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.56 E-value=1.5e-14 Score=162.30 Aligned_cols=111 Identities=18% Similarity=0.110 Sum_probs=76.2
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||||. .|..||.+++.++.....+++..++|..... .....+..++|+|+|++.+.+.+..
T Consensus 57 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~v~T~~~l~~~~~~-------- 122 (337)
T 2z0m_A 57 MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYK------AQINRVRNADIVVATPGRLLDLWSK-------- 122 (337)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHH------HHHHHHTTCSEEEECHHHHHHHHHT--------
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchH------HHHhhcCCCCEEEECHHHHHHHHHc--------
Confidence 468999998 6889999999998764567888888764321 1223445689999999999875421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhccC-eEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a~-~RwlLTGTPi 637 (1137)
..+..-.|++||+||||.+.+.. ......+..+... ..+++|+||-
T Consensus 123 --------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~ 171 (337)
T 2z0m_A 123 --------------GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIP 171 (337)
T ss_dssp --------------TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred --------------CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCC
Confidence 01223468899999999986543 3333334444444 4557799994
No 19
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.56 E-value=2.3e-14 Score=155.69 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=73.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCe-EEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~-V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+++|||||. .++.||.+++.++ .++ +..+.|.... ..+|+|+||+.+.....
T Consensus 134 ~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~~--------------~~~i~v~T~~~l~~~~~-------- 187 (237)
T 2fz4_A 134 TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAE-------- 187 (237)
T ss_dssp SCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCBC--------------CCSEEEEEHHHHHHTHH--------
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCCC--------------cCCEEEEeHHHHHhhHH--------
Confidence 479999999 7889999999994 466 8888886532 46899999999887531
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 640 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~ 640 (1137)
...-.|++||+||+|++.+..- .+.+..+++.++++|||||..++
T Consensus 188 -----------------~~~~~~~llIiDEaH~l~~~~~--~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 188 -----------------KLGNRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp -----------------HHTTTCSEEEEECSSCCCTTTH--HHHHHTCCCSEEEEEEESCC---
T ss_pred -----------------HhcccCCEEEEECCccCCChHH--HHHHHhccCCEEEEEecCCCCCC
Confidence 1123589999999999987542 33455678899999999998764
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.52 E-value=2.8e-13 Score=155.69 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=75.6
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.++|||||. .|..||.+++.++.... .+++.++.|....... ........++|+|+|++.+...+...
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~iiv~T~~~l~~~~~~~------ 146 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD----EEVLKKNCPHIVVGTPGRILALARNK------ 146 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHH----HHHHHHSCCSEEEECHHHHHHHHHTT------
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHH----HHHHhcCCCCEEEECHHHHHHHHHcC------
Confidence 579999998 68899999999987532 6889888886542110 01111234799999999998754310
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhH--HHHH-HHHHh-ccCeEEEEeccCCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA--AATE-MALRL-YAKHRWCITGTPIQ 638 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S--~~~k-al~~L-~a~~RwlLTGTPiq 638 (1137)
.+..-.|.+||+||||.+.+... .... .+..+ .....+++||||-.
T Consensus 147 ----------------~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 196 (391)
T 1xti_A 147 ----------------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 196 (391)
T ss_dssp ----------------SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCS
T ss_pred ----------------CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCH
Confidence 12234678999999999876422 2222 22223 25568999999854
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.51 E-value=4.2e-14 Score=160.43 Aligned_cols=112 Identities=19% Similarity=0.122 Sum_probs=78.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .|..||.+++.++.....+++..+.|..... .....+...+|+|+|++.+...+..
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~~~~-------- 140 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY------PQIKALKNANIVVGTPGRILDHINR-------- 140 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHH------HHHHHHHTCSEEEECHHHHHHHHHT--------
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH------HHHhhcCCCCEEEecHHHHHHHHHc--------
Confidence 579999998 5779999999999865567888887765421 1223445789999999999876532
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh-ccCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L-~a~~RwlLTGTPiq 638 (1137)
..+..-.|++||+||||.+.+.. ....+.+..+ .....+++||||..
T Consensus 141 --------------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 190 (367)
T 1hv8_A 141 --------------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR 190 (367)
T ss_dssp --------------TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCH
T ss_pred --------------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCH
Confidence 01223457899999999987654 2233333334 35677999999954
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.44 E-value=2.4e-12 Score=148.60 Aligned_cols=112 Identities=15% Similarity=0.045 Sum_probs=75.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .|..||.+++.++.....+++..+.|....... .......++|+|+|++.+...+...
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~Ivv~T~~~l~~~~~~~------- 157 (400)
T 1s2m_A 90 IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDD-----ILRLNETVHILVGTPGRVLDLASRK------- 157 (400)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHH-----HHHTTSCCSEEEECHHHHHHHHHTT-------
T ss_pred ccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH-----HHHhcCCCCEEEEchHHHHHHHHhC-------
Confidence 479999998 678899999999987556888888876542110 1112356899999999987654210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHH-Hh-ccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RL-YAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~-~L-~a~~RwlLTGTPi 637 (1137)
.+..-.+.+||+||||++.+.. ......+. .+ .....+++|||+-
T Consensus 158 ---------------~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 158 ---------------VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205 (400)
T ss_dssp ---------------CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred ---------------CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence 1222357899999999887653 22222222 22 3557899999973
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.37 E-value=2e-11 Score=139.86 Aligned_cols=108 Identities=10% Similarity=0.030 Sum_probs=73.7
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||||.. |..||.+++.++.....+.+..+.|..... ......+|+|+|++.+...+..
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iiv~T~~~l~~~~~~-------- 138 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK---------NKQINAQVIVGTPGTVLDLMRR-------- 138 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT---------TSCBCCSEEEECHHHHHHHHHT--------
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh---------hccCCCCEEEEcHHHHHHHHHc--------
Confidence 5799999986 789999999998765567777777654322 1234689999999999875421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHH-Hhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMAL-RLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~-~L~-a~~RwlLTGTPi 637 (1137)
..+..-.|++||+||||.+.+.. ......+. .++ ....+++||||-
T Consensus 139 --------------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 139 --------------KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp --------------TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred --------------CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 11223357899999999886522 22222222 232 357899999984
No 24
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.34 E-value=9.8e-12 Score=130.49 Aligned_cols=116 Identities=20% Similarity=0.121 Sum_probs=78.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .+..||.+++.++.+ .+++..++|...... ........++|+|+|++.+...+...
T Consensus 73 ~~~lil~P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~T~~~l~~~~~~~------- 138 (207)
T 2gxq_A 73 PRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGK-----QKEALLRGADAVVATPGRALDYLRQG------- 138 (207)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHH-----HHHHHHHCCSEEEECHHHHHHHHHHT-------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHhh--cceEEEEECCCChHH-----HHHHhhCCCCEEEECHHHHHHHHHcC-------
Confidence 579999998 788999999999986 588888887654311 01122346899999999987754310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhc-cCeEEEEeccCCCCChhhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDL 644 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~-a~~RwlLTGTPiqN~l~DL 644 (1137)
.+..-.+.+||+||||++.+. .......+..++ ....+++|+||- +.+.++
T Consensus 139 ---------------~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 139 ---------------VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp ---------------SSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC-HHHHHH
T ss_pred ---------------CcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC-HHHHHH
Confidence 112235789999999987533 233444444454 456899999984 334443
No 25
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.33 E-value=1.1e-11 Score=131.77 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=76.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhh--cCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
..+|||||. .+..||.+++.++.... .+++.+++|...... ....+ ...+|+|+|++.+...+...
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~~~~~~~~~i~v~T~~~l~~~~~~~---- 152 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK------DEEVLKKNCPHIVVGTPGRILALARNK---- 152 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH------HHHHHHHSCCSEEEECHHHHHHHHHTT----
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHH------HHHHHhcCCCCEEEeCHHHHHHHHHhC----
Confidence 479999998 68899999999987532 688988888643211 11112 34699999999998754310
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEecccccccCh-h--HHHHHHHHHhc-cCeEEEEeccCCCCChhhh
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A--AAATEMALRLY-AKHRWCITGTPIQRKLDDL 644 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-~--S~~~kal~~L~-a~~RwlLTGTPiqN~l~DL 644 (1137)
.+..-.+.+||+||||++-.. . ......+..++ ....+++||||-. .+.++
T Consensus 153 ------------------~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~ 207 (220)
T 1t6n_A 153 ------------------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK-EIRPV 207 (220)
T ss_dssp ------------------SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT-TTHHH
T ss_pred ------------------CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCH-HHHHH
Confidence 122235789999999988542 1 22223333343 4578999999954 34443
No 26
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.33 E-value=6e-12 Score=132.47 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCcEEEEeCC-chhHH-HHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 498 TGATLIVCPA-PILAQ-WDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 498 ~~~tLIV~P~-SLl~Q-W~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.+++|||||. .++.| |.+++.++... .+++..+.|....... .......++|+|+||+.+...+.......
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~~~~~- 154 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKIS-----FPEVVKSCDIIISTAQILENSLLNLENGE- 154 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCC-----HHHHHHHCSEEEEEHHHHHHHHHC------
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchh-----HHhhccCCCEEEECHHHHHHHHhccCccc-
Confidence 3589999998 56688 99999998763 6888888886543211 11223468999999999987653211000
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChhH--HHH-HHHHHh--------------ccCeEEEEecc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA--AAT-EMALRL--------------YAKHRWCITGT 635 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S--~~~-kal~~L--------------~a~~RwlLTGT 635 (1137)
...+..-.|++||+||||++..... ... ..+... ...+.++||||
T Consensus 155 ---------------~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 155 ---------------DAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -----------------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred ---------------ccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 0012234688999999999864321 111 111111 34578999998
No 27
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.32 E-value=1.5e-11 Score=142.31 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=74.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||||.. |..||.+++.++.....+.+..+.|...... ..........+|+|+|++.+...+..
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~iiv~T~~~l~~~l~~-------- 176 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA----EVQKLQMEAPHIIVGTPGRVFDMLNR-------- 176 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH----HHHHHTTTCCSEEEECHHHHHHHHHH--------
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH----HHHHHhcCCCCEEEECHHHHHHHHHc--------
Confidence 5799999984 7899999999987544566666666543211 00111225689999999998876531
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh-ccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L-~a~~RwlLTGTPi 637 (1137)
..+..-.+.+||+||||++.+.. ......+..+ .....+++||||-
T Consensus 177 --------------~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 177 --------------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp --------------TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred --------------CCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 01223347899999999875433 3444444455 3456789999984
No 28
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.32 E-value=8.2e-12 Score=143.33 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=78.6
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+++|||||. .|..||.+++.++.....+++..++|...... ....+...+|+|+|++.+...+..
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~i~v~T~~~l~~~~~~-------- 155 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE------DAEGLRDAQIVVGTPGRVFDNIQR-------- 155 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHH------HHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHH------HHhhcCCCCEEEECHHHHHHHHHh--------
Confidence 589999998 68899999999988755788888888654211 223344789999999998875431
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHh-ccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL-YAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L-~a~~RwlLTGTPi 637 (1137)
..+....|++||+||||.+.+. .....+.+..+ .....+++||||-
T Consensus 156 --------------~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 156 --------------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp --------------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred --------------CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence 0122346889999999997433 23344444445 3456899999984
No 29
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.28 E-value=4.3e-11 Score=128.55 Aligned_cols=110 Identities=20% Similarity=0.151 Sum_probs=77.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+|||||. .|..||.+++.++.... .+++.++.|...... ....+...+|+|+|++.+...+..
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~Iiv~Tp~~l~~~~~~------- 159 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ------DKTRLKKCHIAVGSPGRIKQLIEL------- 159 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHH------HHHHTTSCSEEEECHHHHHHHHHT-------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHH------HHHhccCCCEEEECHHHHHHHHhc-------
Confidence 479999998 68899999999987432 688888888654211 223345789999999999875421
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccCh---hHHHHHHHHHhc-cCeEEEEeccC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRLY-AKHRWCITGTP 636 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~---~S~~~kal~~L~-a~~RwlLTGTP 636 (1137)
..+..-.+++||+||||++-+. .......+..++ ....+++|||+
T Consensus 160 ---------------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 160 ---------------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp ---------------TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred ---------------CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 0122235789999999998443 344444555665 45689999996
No 30
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.28 E-value=4.7e-11 Score=127.11 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=73.7
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .+..||.+++.++.....+++..++|...... ....+..++|+|+|++.+...+...
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~iiv~Tp~~l~~~~~~~------- 149 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE------DAEGLRDAQIVVGTPGRVFDNIQRR------- 149 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------------CTTCSEEEECHHHHHHHHHTT-------
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH------HHhcCCCCCEEEECHHHHHHHHHhC-------
Confidence 579999998 67899999999988655788888888654321 1223445899999999987654310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
.+..-.+.+||+||||++.+.. ......+..++ ....+++|+|+-
T Consensus 150 ---------------~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 150 ---------------RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp ---------------SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred ---------------CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 1122357899999999875432 33444444453 446889999984
No 31
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.27 E-value=2.9e-11 Score=130.04 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=78.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .|..||.+++.++.....+++..++|...... ....+..++|+|+|++.+...+...
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~iiv~Tp~~l~~~l~~~------- 164 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH------EAERINNINILVCTPGRLLQHMDET------- 164 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHH------HHHHHTTCSEEEECHHHHHHHHHHC-------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHH------HHHhCCCCCEEEECHHHHHHHHHhc-------
Confidence 479999998 68899999999998655688888888654321 2234467899999999997654210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
..+..-.+.+||+||||++.+. .......+..++ ....+++|||+-
T Consensus 165 --------------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 165 --------------VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp --------------SSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred --------------CCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 0122335789999999988653 244445555564 455899999974
No 32
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.23 E-value=9.6e-11 Score=122.94 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=75.1
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+|||||. .+..||.+++.++.... .+++..+.|....... .......++|+|+|++.+...+...
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~------ 140 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD-----IMRLDDTVHVVIATPGRILDLIKKG------ 140 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH-----HHHTTSCCSEEEECHHHHHHHHHTT------
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH-----HHhcCCCCCEEEeCHHHHHHHHHcC------
Confidence 479999998 57799999999887532 6788888876542110 1112246899999999997654310
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
.+..-.+.+||+||||++.... ......+..++ ....+++|||+-
T Consensus 141 ----------------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 141 ----------------VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp ----------------CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred ----------------CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 1112357789999999876532 33334444454 567899999984
No 33
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.22 E-value=1.1e-10 Score=124.22 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=76.1
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCC----CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPG----SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g----~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
..+|||||. .+..||.+++.++.... .+++..+.|....... .......++|+|+|++.+...+...
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~Iiv~Tp~~l~~~l~~~--- 144 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA-----LEKLNVQPHIVIGTPGRINDFIREQ--- 144 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT-----TCCCSSCCSEEEECHHHHHHHHHTT---
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH-----HHHcCCCCCEEEeCHHHHHHHHHcC---
Confidence 479999998 68899999999887532 4677777776432110 0011136799999999998754310
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccCCCCChhh
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDD 643 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTPiqN~l~D 643 (1137)
.+..-.+..||+||||.+.+.. ......+..++ ....+++|||| .+.+.+
T Consensus 145 -------------------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 145 -------------------ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp -------------------CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred -------------------CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHH
Confidence 1122356789999999986432 34444555554 45689999997 334443
No 34
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.20 E-value=9.9e-11 Score=135.70 Aligned_cols=112 Identities=16% Similarity=0.052 Sum_probs=76.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.++|||||.. |..||.+++.++.....+++..+.|....... ........+|+|+|++.+...+..
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~ivv~Tp~~l~~~l~~-------- 172 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGED-----IRKLDYGQHVVAGTPGRVFDMIRR-------- 172 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHH-----HHHHHHCCSEEEECHHHHHHHHHT--------
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH-----HHHhhcCCCEEEcCHHHHHHHHHh--------
Confidence 5799999985 88999999999876556778877776432110 111124579999999998865432
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh-ccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L-~a~~RwlLTGTPi 637 (1137)
..+..-.|.+||+||||++.+.. ......+..+ .....+++||||-
T Consensus 173 --------------~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 173 --------------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221 (410)
T ss_dssp --------------TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred --------------CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCC
Confidence 01223457899999999987654 2233333334 3467899999984
No 35
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.14 E-value=2.2e-10 Score=124.56 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=74.6
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .|..||.+++.++.....+++..+.|....... .......++|+|+|++.+...+...
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~Ivv~Tp~~l~~~l~~~------- 168 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ-----IREVQMGCHLLVATPGRLVDFIEKN------- 168 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHH-----HHHHSSCCSEEEECHHHHHHHHHTT-------
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH-----HHHhCCCCCEEEECHHHHHHHHHcC-------
Confidence 579999998 688999999999876556788777776433110 1111246799999999998754310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHh--c---cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL--Y---AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L--~---a~~RwlLTGTPi 637 (1137)
.+.--.+.+||+||||++-+. .......+..+ . ....+++||||-
T Consensus 169 ---------------~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 169 ---------------KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp ---------------SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred ---------------CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 111234678999999987543 23344444432 2 345899999974
No 36
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.11 E-value=5.8e-10 Score=120.43 Aligned_cols=113 Identities=17% Similarity=0.073 Sum_probs=72.1
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .+..||.+++.++.....+++..+.|........ ........+|+|+|++.+...+...
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~~~Ilv~Tp~~l~~~l~~~------- 167 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEM----QKLQAEAPHIVVGTPGRVFDMLNRR------- 167 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-----------------CCCSEEEECHHHHHHHHHTT-------
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHH----HHHhcCCCCEEEECHHHHHHHHHhC-------
Confidence 479999998 6889999999998864457777777654321100 1111123799999999987654210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccC--hhHHHHHHHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN--~~S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
.+..-.+.+||+||||++-. ........+..++ ....+++|||+-
T Consensus 168 ---------------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 168 ---------------YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp ---------------SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred ---------------CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 11123478999999998743 3345555556665 346789999984
No 37
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.11 E-value=2e-10 Score=125.26 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=75.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .|..||.+++.++...-.+++..+.|...... .........+|+|+|++.+...+....
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~I~v~Tp~~l~~~l~~~~------ 180 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMS-----QSLALAKKPHIIIATPGRLIDHLENTK------ 180 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHH-----HHHHHHTCCSEEEECHHHHHHHHHHST------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHH-----HHHHhcCCCCEEEECHHHHHHHHHcCC------
Confidence 469999998 57799999999986543578888877643211 011223568999999999987543100
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
.+..-.+.+||+||||++.+.. ....+.+..++ ....+++|||+-
T Consensus 181 ---------------~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 181 ---------------GFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp ---------------TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred ---------------CcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 1112357899999999876532 33444444554 567899999984
No 38
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.10 E-value=3.3e-10 Score=146.01 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=68.8
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh--cCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.++||||| ..|..||.++|.+|.+. . ++.+..... ....+ ...+|+|||+++|...+....
T Consensus 331 ~rvLvlvpr~eL~~Q~~~~f~~f~~~-~----v~~~~s~~~-------l~~~L~~~~~~IiVtTiqkl~~~l~~~~---- 394 (1038)
T 2w00_A 331 DKVFFVVDRKDLDYQTMKEYQRFSPD-S----VNGSENTAG-------LKRNLDKDDNKIIVTTIQKLNNLMKAES---- 394 (1038)
T ss_dssp CEEEEEECGGGCCHHHHHHHHTTSTT-C----SSSSCCCHH-------HHHHHHCSSCCEEEEEHHHHHHHHHHCC----
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhccc-c----cccccCHHH-------HHHHhcCCCCCEEEEEHHHHHHHHhccc----
Confidence 47999999 46889999999998752 1 112211110 11122 358999999999987542100
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHH-HHHhccCeEEEEeccCCCC
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM-ALRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~ka-l~~L~a~~RwlLTGTPiqN 639 (1137)
.. ..+. .+..||+||||+.... ..++. ...++...++++||||+..
T Consensus 395 ----------~~----~~~~--~~~lvIiDEAHrs~~~--~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 395 ----------DL----PVYN--QQVVFIFDECHRSQFG--EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp ----------CC----GGGG--SCEEEEEESCCTTHHH--HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred ----------ch----hccc--cccEEEEEccchhcch--HHHHHHHHhCCcccEEEEeCCcccc
Confidence 00 0111 5789999999997542 22333 3456778999999999864
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.02 E-value=1.1e-09 Score=143.40 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=77.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||||.. |..||.+++.+++..-.+++..++|....... ......-.....||||+|++.+...+
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~-~~~~~~l~~g~~dIvV~T~~ll~~~~---------- 721 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ-TQILAEVAEGKIDILIGTHKLLQSDV---------- 721 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHH-HHHHHHHHTTCCSEEEECTHHHHSCC----------
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHhCCc----------
Confidence 4799999986 67899999998886445788888875432100 00001111236899999999886542
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhcc-CeEEEEeccCCCCChhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDD 643 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a-~~RwlLTGTPiqN~l~D 643 (1137)
.--.|.+||+||+|++.. .....++.+.. .+.++|||||+++.+..
T Consensus 722 -----------------~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~~~~vl~lSATp~p~~l~~ 768 (1151)
T 2eyq_A 722 -----------------KFKDLGLLIVDEEHRFGV---RHKERIKAMRANVDILTLTATPIPRTLNM 768 (1151)
T ss_dssp -----------------CCSSEEEEEEESGGGSCH---HHHHHHHHHHTTSEEEEEESSCCCHHHHH
T ss_pred -----------------cccccceEEEechHhcCh---HHHHHHHHhcCCCCEEEEcCCCChhhHHH
Confidence 123578999999999753 34455566644 57899999999875543
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.97 E-value=4.6e-09 Score=113.46 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=72.7
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||+|. .|..||.+++.++.....+++..++|....... ........++|+|+|++.+...+.....
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~I~v~Tp~~l~~~l~~~~~----- 169 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK----FGPKSSKKFDILVTTPNRLIYLLKQDPP----- 169 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT----TSTTSCCCCCEEEECHHHHHHHHHSSSC-----
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH----hhhhhcCCCCEEEECHHHHHHHHHhCCC-----
Confidence 469999998 578999999999987556777766654321100 0112235689999999999775532100
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccC-----hhHHHHHHHHHh--ccCeEEEEeccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-----NAAAATEMALRL--YAKHRWCITGTP 636 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN-----~~S~~~kal~~L--~a~~RwlLTGTP 636 (1137)
.+.--.+.+||+||||++-. ........+..+ .....+++|+|+
T Consensus 170 ---------------~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 170 ---------------GIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp ---------------SCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred ---------------CcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 11122467999999999853 222333333333 245789999998
No 41
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.96 E-value=6.1e-09 Score=111.27 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=71.2
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||+|.. |..||.+++.++.. ..+++..+.|....... ........+|+|+|++.+.......
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~iiv~Tp~~l~~~~~~~------- 161 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQ-----IEDISKGVDIIIATPGRLNDLQMNN------- 161 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------C-----HHHHHSCCSEEEECHHHHHHHHHTT-------
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHH-----HHHhcCCCCEEEECHHHHHHHHHcC-------
Confidence 5789999985 77899999999874 36777777765432210 1122345899999999998754210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTP 636 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTP 636 (1137)
.+.--.+.+||+||||++-+.. ....+.+..++ ....+++|+|.
T Consensus 162 ---------------~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 162 ---------------SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp ---------------CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred ---------------CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 1122346799999999875432 33444455554 45678899996
No 42
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.96 E-value=7.7e-09 Score=119.24 Aligned_cols=110 Identities=15% Similarity=0.022 Sum_probs=71.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+.+|||||.. |..||.+++.++... +.+++....|..... .......+|+|+|++.+...+...
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ivv~T~~~l~~~~~~~------ 161 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE--------RGQKISEQIVIGTPGTVLDWCSKL------ 161 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC--------TTCCCCCSEEEECHHHHHHHHTTS------
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh--------hhhcCCCCEEEECchHHHHHHHhc------
Confidence 4799999986 778998888877542 256777666654321 112345789999999998754311
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccC--hhHHHHHHHH-Hhc-cCeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMAL-RLY-AKHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN--~~S~~~kal~-~L~-a~~RwlLTGTPi 637 (1137)
..+..-.+++||+||||++-. ........+. .+. ....+++|+||-
T Consensus 162 ---------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 211 (412)
T 3fht_A 162 ---------------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 211 (412)
T ss_dssp ---------------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred ---------------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence 012224688999999998743 2223333333 333 346889999984
No 43
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.92 E-value=4.1e-09 Score=122.70 Aligned_cols=116 Identities=9% Similarity=0.032 Sum_probs=78.1
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh--cCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+.+|||+|. .|..||.+++.++.+ .++++..++|....... ......+ ..++|+|+|++.+...+.
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~---~~~~~~l~~~~~~Iiv~Tp~~l~~~l~------- 133 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEK---EKFEKSFEEDDYHILVFSTQFVSKNRE------- 133 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHH---HHHHHHHHHTCCSEEEEEHHHHHHCHH-------
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhH---HHHHHHhhcCCCCEEEECHHHHHHHHH-------
Confidence 579999998 688999999999876 57899999987542100 0011122 348999999999976542
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccC-------------hhHH-HHHHHHHh------------ccCeE
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-------------NAAA-ATEMALRL------------YAKHR 629 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN-------------~~S~-~~kal~~L------------~a~~R 629 (1137)
.+..-.+.+||+||||.+.. .... ....+..+ .....
T Consensus 134 -----------------~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 196 (414)
T 3oiy_A 134 -----------------KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGIL 196 (414)
T ss_dssp -----------------HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEE
T ss_pred -----------------HhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceE
Confidence 12223688999999998632 1122 23333334 44578
Q ss_pred EEEeccCCCCChh
Q 001153 630 WCITGTPIQRKLD 642 (1137)
Q Consensus 630 wlLTGTPiqN~l~ 642 (1137)
+++|+||....+.
T Consensus 197 i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 197 VVSSATAKPRGIR 209 (414)
T ss_dssp EESSCCSSCCSST
T ss_pred EEEecCCCcchhH
Confidence 8999998777654
No 44
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.89 E-value=7.2e-09 Score=122.05 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=75.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||. .|..||.+++.++.....+++.+++|....... .......++|+|+|++.|...+...
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-----~~~l~~~~~Ivv~Tp~~l~~~l~~~------- 197 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ-----NECITRGCHVVIATPGRLLDFVDRT------- 197 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHH-----HHHHTTCCSEEEECHHHHHHHHHTT-------
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHH-----HHHhhcCCCEEEEChHHHHHHHHhC-------
Confidence 479999998 588999999999986556777777765432110 1112246899999999998754310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh---ccCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---YAKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L---~a~~RwlLTGTPi 637 (1137)
.+.--.+.+||+||||++.+.. ....+.+..+ .....+++|||+-
T Consensus 198 ---------------~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 198 ---------------FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp ---------------SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred ---------------CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC
Confidence 1222356799999999976643 3333333333 3457899999983
No 45
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.84 E-value=5.9e-09 Score=125.38 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=67.3
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||||.. |+.||.+++.++.....+.+....+.... ......++|+|+|++.+...+..
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Ivv~T~~~l~~~l~~-------- 252 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP---------KGAKIDAQIVIGTPGTVMDLMKR-------- 252 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-------------------CCCCSEEEECHHHHHHHHHT--------
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc---------ccccCCCCEEEECHHHHHHHHHc--------
Confidence 4799999986 88999999999886334444433332211 11223689999999998875421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh---HHHHHHHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~---S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
..+..-.+++||+||+|.+.... .........+. ....+++|+||-
T Consensus 253 --------------~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 253 --------------RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp --------------TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCS
T ss_pred --------------CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCC
Confidence 01222357899999999986422 23333333344 345699999984
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.83 E-value=3e-09 Score=133.75 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=73.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|. .|..||.+++.+++.+-++++..++|........ .....-.....+|||+|++.+...+
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~~---------- 486 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKE-KIKSGLRNGQIDVVIGTHALIQEDV---------- 486 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHH-HHHHHHHSSCCCEEEECTTHHHHCC----------
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHH-HHHHHHhcCCCCEEEECHHHHhhhh----------
Confidence 468999998 4678999999999865568999999875432100 0001111235899999999886532
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHH-hccCeEEEEeccCCCCChh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQRKLD 642 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~-L~a~~RwlLTGTPiqN~l~ 642 (1137)
.--++.+||+||+|++.... . ..+.. ....+.+++||||+.+.+.
T Consensus 487 -----------------~~~~l~lVVIDEaHr~g~~q--r-~~l~~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 487 -----------------HFKNLGLVIIDEQHRFGVKQ--R-EALMNKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp -----------------CCSCCCEEEEESCCCC--------CCCCSSSSCCCEEEEESSCCCHHHH
T ss_pred -----------------hccCCceEEecccchhhHHH--H-HHHHHhCCCCCEEEEeCCCCHHHHH
Confidence 12246799999999974221 1 11111 1346799999999876543
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.6e-08 Score=130.62 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=71.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+||++|. .|..||.+++.+++. ++.+++|.... ....+|+|+|++.|.+.+...
T Consensus 130 ~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~------------~~~~~IvV~Tpe~L~~~L~~~------- 186 (1010)
T 2xgj_A 130 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI------------NPDAGCLVMTTEILRSMLYRG------- 186 (1010)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEE------------CTTCSEEEEEHHHHHHHHHHT-------
T ss_pred CeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCcc------------CCCCCEEEEcHHHHHHHHHcC-------
Confidence 579999997 788999999999874 67778885432 135789999999998754310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-HH-HHHHHHHhc-cCeEEEEeccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AA-ATEMALRLY-AKHRWCITGTP 636 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~-~~kal~~L~-a~~RwlLTGTP 636 (1137)
...--.+.+||+||+|++.+.. .. ....+..++ ....++||+|+
T Consensus 187 ---------------~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi 233 (1010)
T 2xgj_A 187 ---------------SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI 233 (1010)
T ss_dssp ---------------CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred ---------------cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCC
Confidence 1122367899999999997753 33 333444454 46789999994
No 48
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.81 E-value=2.3e-08 Score=115.70 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=74.1
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||+|. .|..||.+++.++.....+++..++|....... ........+|+|+|++.|...+...
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~I~v~Tp~~l~~~l~~~------- 169 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ-----IRDLERGCHLLVATPGRLVDMMERG------- 169 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH-----HHHHTTCCSEEEECHHHHHHHHHTT-------
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH-----HHHhhCCCCEEEEChHHHHHHHHcC-------
Confidence 579999998 688999999999876556888888876432110 1111245899999999998765320
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-HHHHHHHHH---hc---cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALR---LY---AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~~~kal~~---L~---a~~RwlLTGTPi 637 (1137)
.+..-.+.+||+||||++.... ....+.+.. +. ....+++|+||-
T Consensus 170 ---------------~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 170 ---------------KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp ---------------SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred ---------------CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 1222356899999999875433 222222222 11 346799999983
No 49
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.76 E-value=1.5e-08 Score=122.45 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=82.0
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|. +|+.||.+++.++ ++++..++|....... ...........++|+++|++.+.....
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~-~~~~~~~~~~~~~ilv~Tpe~l~~~~~--------- 131 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQ-LEVMTGCRTGQIRLLYIAPERLMLDNF--------- 131 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHH-HHHHHHHHHTCCSEEEECHHHHTSTTH---------
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHhChHH---------
Confidence 578999998 6889999999986 4677777775432100 000011123468999999999964310
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-------S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1137)
...+....+.+||+||||.+.... .........++....+++|+||..+...|+...+.+
T Consensus 132 -------------~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 198 (523)
T 1oyw_A 132 -------------LEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (523)
T ss_dssp -------------HHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred -------------HHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCC
Confidence 012444678899999999986432 112223334456789999999988766777666543
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.76 E-value=2.8e-08 Score=107.39 Aligned_cols=111 Identities=15% Similarity=0.068 Sum_probs=72.4
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||||.. |..||.+++.++.....+++..++|....... .......++|+|+|++.+...+...
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~I~v~Tp~~l~~~l~~~------- 170 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ-----IRDLERGVEICIATPGRLIDFLECG------- 170 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHH-----HHHHHHCCSEEEECHHHHHHHHHHT-------
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH-----HHHhcCCCCEEEECHHHHHHHHHcC-------
Confidence 4689999984 77899999998765446788877776432110 1112235899999999997654210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTP 636 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTP 636 (1137)
.+.--.+.+||+||||++-... ......+..++ ....+++|+|+
T Consensus 171 ---------------~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 171 ---------------KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp ---------------SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred ---------------CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 1112346789999999875432 33333444443 45688899996
No 51
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.75 E-value=6e-08 Score=106.46 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=74.6
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+|||+|. .|..||.+++.++.......+..+.|...... .........+|+|+|.+.+...+....
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~Iiv~Tp~~l~~~~~~~~------ 195 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSA-----EAQKLGNGINIIVATPGRLLDHMQNTP------ 195 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHH-----HHHHHHHCCSEEEECHHHHHHHHHHCT------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHH-----HHHHhcCCCCEEEEcHHHHHHHHHccC------
Confidence 468999998 57889999999988755677777777543211 011112458999999999876542100
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
.+.--.+.+||+||||++-.. .......+..++ ....+++|+||-
T Consensus 196 ---------------~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 196 ---------------GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp ---------------TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred ---------------CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 011124578999999987543 233444445554 456799999985
No 52
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.68 E-value=1.6e-07 Score=111.46 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=67.9
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
..+|||+|.. |..||.+++.++... +.+.+.+..|..... .......+|+|+|++.+...+....
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Ivv~Tp~~l~~~l~~~~----- 229 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE--------RGQKISEQIVIGTPGTVLDWCSKLK----- 229 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC--------TTCCCCCSEEEECHHHHHHHHTTSC-----
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc--------ccccCCCCEEEECchHHHHHHHhcC-----
Confidence 3699999985 678887776664321 256776666654321 1112356899999999977653210
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHH-hc-cCeEEEEeccCC
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALR-LY-AKHRWCITGTPI 637 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~-L~-a~~RwlLTGTPi 637 (1137)
.+.--.+.+||+||||++-.. .......+.. +. ....+++|+||-
T Consensus 230 ----------------~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 230 ----------------FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (479)
T ss_dssp ----------------CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCC
T ss_pred ----------------CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCC
Confidence 122246789999999987542 2222223332 32 356899999984
No 53
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.66 E-value=1e-07 Score=118.98 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=77.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|.- +..||.++++++.+ -++++..+.|..... .......+|+|+|++.+...+....
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~--------~~~~~~~~Iiv~Tpe~l~~~l~~~~------ 133 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESR--------DEHLGDCDIIVTTSEKADSLIRNRA------ 133 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCC--------SSCSTTCSEEEEEHHHHHHHHHTTC------
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcc--------hhhccCCCEEEECHHHHHHHHHcCh------
Confidence 5799999986 88999999976654 368899998865432 1224578999999999977543200
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHh----ccCeEEEEeccCCCCChhhhHh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL----YAKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L----~a~~RwlLTGTPiqN~l~DL~s 646 (1137)
..+ -.+..||+||+|.+... .......+..+ +....+++|+|+- +..++..
T Consensus 134 --------------~~l--~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~ 190 (702)
T 2p6r_A 134 --------------SWI--KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE 190 (702)
T ss_dssp --------------SGG--GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH
T ss_pred --------------hHH--hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH
Confidence 012 24679999999998762 22333333334 3567899999974 3555544
No 54
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.60 E-value=1.8e-07 Score=117.15 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=79.2
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|. .+..||.+++.++.+ -++++..++|..... .......+|+|+|++.+...+...
T Consensus 69 ~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~--------~~~~~~~~Iiv~Tpe~l~~~~~~~------- 132 (720)
T 2zj8_A 69 GKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSK--------DEWLGKYDIIIATAEKFDSLLRHG------- 132 (720)
T ss_dssp SEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCC--------CGGGGGCSEEEECHHHHHHHHHHT-------
T ss_pred CEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcc--------ccccCCCCEEEECHHHHHHHHHcC-------
Confidence 479999997 688999999986653 258899999864331 123457999999999997754210
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh-h-HHHHHHHHHhc-cCeEEEEeccCCCCChhhhHhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A-AAATEMALRLY-AKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~-~-S~~~kal~~L~-a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
...--.+.+||+||+|.+... . ......+..++ ....+++|+|+- +..++-..
T Consensus 133 ---------------~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~~ 188 (720)
T 2zj8_A 133 ---------------SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIG--NPEELAEW 188 (720)
T ss_dssp ---------------CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHHH
T ss_pred ---------------hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHHH
Confidence 011125689999999998752 2 33334444565 567899999974 25555443
No 55
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.57 E-value=3.3e-07 Score=114.55 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=79.7
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|.- +..||.++++++.. -++++..+.|..... ...+...+|+|+|++.+...+...
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~--------~~~~~~~~Iiv~Tpe~l~~~~~~~------- 139 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTD--------DAWLKNYDIIITTYEKLDSLWRHR------- 139 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSC--------CGGGGGCSEEEECHHHHHHHHHHC-------
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCc--------hhhcCCCCEEEEcHHHHHHHHhCC-------
Confidence 5799999986 88999999976543 257888888865431 123457999999999998754320
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccCh--hHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~--~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
+..--.+..||+||+|.+.+. .......+..++..+.+++|+||- +..++...
T Consensus 140 ---------------~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~~ 194 (715)
T 2va8_A 140 ---------------PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATIS--NYKQIAKW 194 (715)
T ss_dssp ---------------CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCT--THHHHHHH
T ss_pred ---------------hhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCC--CHHHHHHH
Confidence 111125689999999998752 233334455667788999999984 24555443
No 56
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.2e-07 Score=119.76 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=74.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+||++|. .|..||.+++.+++. ++.++.|.... ....+|+|+|++.|.+.+...
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~------------~~~~~IlV~Tpe~L~~~L~~~------- 284 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI------------NPDAGCLVMTTEILRSMLYRG------- 284 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC------------CCSCSEEEEEHHHHHHHHHHC-------
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc------------CCCCCEEEeChHHHHHHHHcC-------
Confidence 579999998 577899999999874 56677775432 135899999999998865321
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh-HH-HHHHHHHhc-cCeEEEEeccCCCCChhhhHhhh
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AA-ATEMALRLY-AKHRWCITGTPIQRKLDDLYGLL 648 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-S~-~~kal~~L~-a~~RwlLTGTPiqN~l~DL~sLL 648 (1137)
...--.+.+||+||||++.... .. ....+..++ ....++||+| +.|. .++...+
T Consensus 285 ---------------~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l 341 (1108)
T 3l9o_A 285 ---------------SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSAT-IPNA-MEFAEWI 341 (1108)
T ss_dssp ---------------SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECS-CSSC-HHHHHHH
T ss_pred ---------------ccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCC-CCCH-HHHHHHH
Confidence 1112357899999999997643 22 233344454 4568999999 4454 3444333
No 57
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.55 E-value=1.7e-07 Score=114.26 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=69.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCC----CCCCeEEEEcCCCcccccccccchhhh--hcCCcEEEEehHHHhhhcccCC
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTR----PGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDS 571 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~----~g~L~V~vy~G~~~~~~~~~~~~~~~~--l~~~DVVITTYetL~~d~~~~~ 571 (1137)
..+|||+|. .|..||.+++.++.. ...+.+....|...... .... ....+|+|+|++.|...+...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~------~~~~l~~~~~~IlV~Tp~~l~~~l~~~- 168 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA------AMNKMNKLRPNIVIATPGRLIDVLEKY- 168 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH------HHHHHHHHCCSEEEECHHHHHHHHHHH-
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH------HHHHHhcCCCCEEEECHHHHHHHHHhc-
Confidence 478999998 578899999998641 11355655555432210 1111 235899999999997654210
Q ss_pred CCCccchhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh---c-----cCeEEEEeccCCC
Q 001153 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---Y-----AKHRWCITGTPIQ 638 (1137)
Q Consensus 572 ~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L---~-----a~~RwlLTGTPiq 638 (1137)
....--.+.+||+||||.+-... ......+..+ . ....+++|+|+-.
T Consensus 169 --------------------~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 169 --------------------SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp --------------------HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred --------------------cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 01112246789999999986542 2222222223 2 3468999999753
No 58
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.53 E-value=1.7e-07 Score=114.85 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=79.2
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch-hhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD-ISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~-~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+.+|||+|. +|+.||.+.+.++ ++++..++|............. ......++|+++|++.|.....
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~-------- 152 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-------- 152 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH--------
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH--------
Confidence 579999997 6889999999997 4777777776432100000000 0023578999999998864200
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChh-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-------S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1137)
..... ...+....+.+||+||||.+.... .........++....+++|+||-.....++...+.
T Consensus 153 ---~~~~l------~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 153 ---FMSRL------EKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp ---HHHHH------HHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTT
T ss_pred ---HHHHH------HhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhC
Confidence 00000 011223368899999999976422 12222333455678999999997665566555443
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.52 E-value=4e-07 Score=117.65 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=73.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
+.+|||+|. .|..||.+++.+.++ .+++..++|.... ....+|+|+|.+.|.+.+..
T Consensus 83 ~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~------------~~~~~IlV~Tpe~L~~~l~~-------- 140 (997)
T 4a4z_A 83 TKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI------------NPDANCLIMTTEILRSMLYR-------- 140 (997)
T ss_dssp CEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE------------CTTSSEEEEEHHHHHHHHHH--------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc------------CCCCCEEEECHHHHHHHHHh--------
Confidence 469999996 578899999999885 6889999986432 13479999999999876431
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~-a~~RwlLTGTPi 637 (1137)
..+..-.+.+||+||||++.+.. ....+.+..++ ....++||+||-
T Consensus 141 --------------~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 141 --------------GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp --------------TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT
T ss_pred --------------CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCC
Confidence 01122357899999999986642 23334445554 457799999974
No 60
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.52 E-value=3.9e-07 Score=110.33 Aligned_cols=114 Identities=18% Similarity=0.084 Sum_probs=67.9
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCC----CCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 499 GATLIVCPA-PILAQWDAEITRHTR----PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k~~~----~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
..+|||+|. .|..||.+++.++.. .....+....|...... ..........+|+|+|++.+...+...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--- 219 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA----AMNKMNKLRPNIVIATPGRLIDVLEKY--- 219 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH----HHHHHHHHCCSEEEECHHHHHHHHHHH---
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH----HHHHHhcCCCCEEEECcHHHHHHHHhc---
Confidence 469999997 578899999998532 11345555555432110 001111236899999999997654210
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHh---c-----cCeEEEEeccCC
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---Y-----AKHRWCITGTPI 637 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L---~-----a~~RwlLTGTPi 637 (1137)
....--.+.+||+||||++-... ......+..+ . ....+++|+||-
T Consensus 220 ------------------~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~ 275 (563)
T 3i5x_A 220 ------------------SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLD 275 (563)
T ss_dssp ------------------HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCC
T ss_pred ------------------cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCC
Confidence 00111236789999999976542 2222222222 1 345899999984
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.36 E-value=4.6e-06 Score=93.41 Aligned_cols=109 Identities=15% Similarity=0.040 Sum_probs=69.0
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.+|||||.. |..|+.+++.++... +.+++..+.|..... .......+|+|+|.+.|...+....
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~IlV~TP~~l~~~l~~~~------ 229 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE--------RGQKISEQIVIGTPGTVLDWCSKLK------ 229 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCC--------TTCCCCCSEEEECHHHHHHHHTTTC------
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHh--------hhhcCCCCEEEECHHHHHHHHHhcC------
Confidence 589999985 778998888877642 257777777654321 1113457899999999976553100
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccC--hhHHHHH-HHHHhc-cCeEEEEeccCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATE-MALRLY-AKHRWCITGTPI 637 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN--~~S~~~k-al~~L~-a~~RwlLTGTPi 637 (1137)
.+.--...+||+||||++-. ....... .+..++ ....+++|+|+-
T Consensus 230 ---------------~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 230 ---------------FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp ---------------CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred ---------------CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 11112457899999998753 1122222 223333 346788999984
No 62
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.16 E-value=1.3e-05 Score=104.50 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=77.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh--cCCcEEEEehHHHhhhcccCCCCCc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
+.+|||+|.. |..|+.+++.++. ...+++..++|....... ......+ ...+|+|+|.+.|...+.
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er---~~~~~~l~~g~~~IlV~Tp~rL~~~l~------- 190 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEK---EKFEKSFEEDDYHILVFSTQFVSKNRE------- 190 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHH---HHHHHHHHTSCCSEEEEEHHHHHHSHH-------
T ss_pred CeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHH---HHHHHHHhCCCCCEEEECHHHHHHHHH-------
Confidence 4699999985 7789999999976 346899999987543100 0011222 348999999999976542
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccccChh-------------HH-HHHHHHHhc------------cCeE
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------------AA-ATEMALRLY------------AKHR 629 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~-------------S~-~~kal~~L~------------a~~R 629 (1137)
.+..-.+.+||+||||.+-... .. ....+..++ ....
T Consensus 191 -----------------~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ 253 (1104)
T 4ddu_A 191 -----------------KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGIL 253 (1104)
T ss_dssp -----------------HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEE
T ss_pred -----------------hhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceE
Confidence 1222357899999999864311 11 233333343 4578
Q ss_pred EEEeccCCCCChhh
Q 001153 630 WCITGTPIQRKLDD 643 (1137)
Q Consensus 630 wlLTGTPiqN~l~D 643 (1137)
+++|+||....+.+
T Consensus 254 ll~SAT~~p~~~~~ 267 (1104)
T 4ddu_A 254 VVSSATAKPRGIRP 267 (1104)
T ss_dssp EEECBSSCCCSSTT
T ss_pred EEEcCCCCcHHHHH
Confidence 99999988877654
No 63
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.78 E-value=7.3e-05 Score=97.41 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=75.9
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCC----eEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCC
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSL----KTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L----~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1137)
..+|||+|.. |..|+.+++.+++..-++ ++..++|....... ......+...+|+|+|.+.|...+..
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~---~~~~~~l~~~~IlV~TP~~L~~~l~~---- 172 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREK---ENFMQNLRNFKIVITTTQFLSKHYRE---- 172 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHH---HHHHHSGGGCSEEEEEHHHHHHCSTT----
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhH---HHHHhhccCCCEEEEcHHHHHHHHHH----
Confidence 4799999985 778999999988764356 78888886543210 00122333489999999999875421
Q ss_pred CccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhc------------cCeEEEEeccCCCC
Q 001153 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY------------AKHRWCITGTPIQR 639 (1137)
Q Consensus 574 ~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~------------a~~RwlLTGTPiqN 639 (1137)
|. .+.+||+||||++-+........+..+. ....+++|+|+...
T Consensus 173 --------------------L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 173 --------------------LG--HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp --------------------SC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred --------------------hc--cCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 22 5779999999998774444444444442 23467888887765
No 64
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.59 E-value=0.00019 Score=87.16 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=28.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCC
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA 534 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~ 534 (1137)
.++||++|+. +..||.+|+.+......+++.+..|.
T Consensus 48 ~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr 84 (551)
T 3crv_A 48 PKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGK 84 (551)
T ss_dssp SEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccc
Confidence 4799999985 67899999998865446888887774
No 65
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.56 E-value=0.00022 Score=86.26 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=20.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcC
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEG 533 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G 533 (1137)
+++||++|+. +..||.+|+.+. .+++.+..|
T Consensus 52 ~~~~~~~~t~~l~~q~~~~~~~l----~~~~~~l~g 83 (540)
T 2vl7_A 52 KKVLIFTRTHSQLDSIYKNAKLL----GLKTGFLIG 83 (540)
T ss_dssp CEEEEEESCHHHHHHHHHHHGGG----TCCEEEC--
T ss_pred CcEEEEcCCHHHHHHHHHHHHhc----CCcEEEecC
Confidence 4788888874 667888888774 345555544
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.37 E-value=0.00045 Score=81.15 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=56.7
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|.. |..|+.+.+. .+.+..+.|.-.. .......+.+.+...+...+..
T Consensus 32 ~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~l~~-------- 87 (431)
T 2v6i_A 32 LRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----------ERTGNEIVDFMCHSTFTMKLLQ-------- 87 (431)
T ss_dssp CCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------------CCCSEEEEEHHHHHHHHHH--------
T ss_pred CCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----------cCCCCceEEEEchHHHHHHHhc--------
Confidence 4799999986 5578777664 3455544443111 1111233556677776543211
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhH-HHHHHHHHh---ccCeEEEEeccCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-AATEMALRL---YAKHRWCITGTPIQR 639 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S-~~~kal~~L---~a~~RwlLTGTPiqN 639 (1137)
...--.+.+||+||+|++ +..+ .....+..+ ...+.+++|+||...
T Consensus 88 ---------------~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 88 ---------------GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ---------------TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred ---------------CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 111224679999999998 4332 223333333 257789999999863
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.30 E-value=0.002 Score=87.53 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=75.5
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
.+.+|+|+|. +|..|=.+++.+.+.+-+++|..+.|.... ........||+|||++.+..-..+..
T Consensus 134 ~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~--------~~~~~~~~~IlVtTpEkld~llr~~~----- 200 (1724)
T 4f92_B 134 DFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQL--------CKEEISATQIIVCTPEKWDIITRKGG----- 200 (1724)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSS--------CCTTGGGCSEEEECHHHHHHHTTSST-----
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCC--------CccccCCCCEEEECHHHHHHHHcCCc-----
Confidence 3578999996 677777777766555446899999997543 22345678999999998755432110
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHH-----H---Hhc-cCeEEEEeccCCCCChhhhHh
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-----L---RLY-AKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal-----~---~L~-a~~RwlLTGTPiqN~l~DL~s 646 (1137)
+ ...+.. -..||+||+|++.+........+ + .+. ....++||+|- .|++|+-.
T Consensus 201 ~-------------~~~l~~--v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~ 262 (1724)
T 4f92_B 201 E-------------RTYTQL--VRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT 262 (1724)
T ss_dssp T-------------HHHHTT--EEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH
T ss_pred c-------------chhhcC--cCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH
Confidence 0 012333 45799999999976543332221 1 222 34689999993 34666543
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.30 E-value=0.00072 Score=72.48 Aligned_cols=105 Identities=13% Similarity=0.029 Sum_probs=57.4
Q ss_pred cEEEEeCCch-hHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 500 ATLIVCPAPI-LAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 500 ~tLIV~P~SL-l~QW~~EI~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..++++|... ..|..+.+.+..... ...+. | +.... ........+|+++|.+.+.+.+..
T Consensus 111 ~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g-~-~~~~~--------~~~~~~~~~Ivv~Tpg~l~~~l~~-------- 172 (235)
T 3llm_A 111 NIVVTQPRRISAVSVAERVAFERGEEPGKSCG-Y-SVRFE--------SILPRPHASIMFCTVGVLLRKLEA-------- 172 (235)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTCCTTSSEE-E-EETTE--------EECCCSSSEEEEEEHHHHHHHHHH--------
T ss_pred EEEEeccchHHHHHHHHHHHHHhccccCceEE-E-eechh--------hccCCCCCeEEEECHHHHHHHHHh--------
Confidence 6788899864 457777777665311 11111 1 10000 011114578999999988875421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccc-cChhH--HHHHHHH-HhccCeEEEEeccCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV-ESNAA--AATEMAL-RLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~I-KN~~S--~~~kal~-~L~a~~RwlLTGTPiqN 639 (1137)
.| -+...||+||||.. -+... ...+.+. ..+....+++|+|+-..
T Consensus 173 ---------------~l--~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 173 ---------------GI--RGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp ---------------CC--TTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCH
T ss_pred ---------------hh--cCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHH
Confidence 12 24579999999973 11111 1122222 22445689999997543
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.09 E-value=0.0024 Score=86.86 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=70.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHh-cCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCcc
Q 001153 499 GATLIVCPA-PILAQWDAEITR-HTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1137)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~EI~k-~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1137)
+..|+|+|. +|..|=.+++.+ +.+.-+++|..+.|.... +.....++||+|+|++.+..-......
T Consensus 973 ~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~--------~~~~~~~~~IiV~TPEkld~llr~~~~---- 1040 (1724)
T 4f92_B 973 GRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST--------DLKLLGKGNIIISTPEKWDILSRRWKQ---- 1040 (1724)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHH--------HHHHHHHCSEEEECHHHHHHHHTTTTT----
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCc--------chhhcCCCCEEEECHHHHHHHHhCccc----
Confidence 468999997 566665555543 222226889888886432 334456789999999987554321100
Q ss_pred chhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHH-HHh-------c-cCeEEEEeccCCCCChhhhHh
Q 001153 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRL-------Y-AKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 577 ~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal-~~L-------~-a~~RwlLTGTPiqN~l~DL~s 646 (1137)
...+.. -..||+||+|++..........+ .++ . ....++||+|- . +..|+-.
T Consensus 1041 --------------~~~l~~--v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl-~-N~~dla~ 1101 (1724)
T 4f92_B 1041 --------------RKNVQN--INLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL-S-NAKDVAH 1101 (1724)
T ss_dssp --------------CHHHHS--CSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB-T-THHHHHH
T ss_pred --------------ccccce--eeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC-C-CHHHHHH
Confidence 012333 35899999999987554433322 222 2 23567889883 2 4555543
No 70
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.06 E-value=0.0019 Score=79.70 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=64.2
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.+||++|.- +..|+.+.+.+.+ ..++....|... .....+|++.|++.|....
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~------------~~~~~~IlV~TPGrLl~~~----------- 312 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT------------ITTGAPVTYSTYGKFLADG----------- 312 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE------------ECCCCSEEEEEHHHHHHTT-----------
T ss_pred eEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe------------ccCCCCEEEECcHHHHhCC-----------
Confidence 689999986 5579988887765 344445555422 1245789999999985431
Q ss_pred hhhhhcccCCCcchhccccceeEEEecccccccChhHH-HHHHHHHhccC---eEEEEeccCCC
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA-ATEMALRLYAK---HRWCITGTPIQ 638 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~-~~kal~~L~a~---~RwlLTGTPiq 638 (1137)
.+..-.+..||+||||++....-. ....+..++.. ..+++|+||-.
T Consensus 313 --------------~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 313 --------------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp --------------SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred --------------CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 133346789999999987533322 23333344322 35778999975
No 71
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.89 E-value=0.0022 Score=75.65 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=58.2
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|.. |..|+.+++.. +.+. |...... ........|.++|.+.+...+..
T Consensus 49 ~~~lvl~Ptr~La~Q~~~~l~g------~~v~-~~~~~~~---------~~~~~~~~i~~~t~~~l~~~l~~-------- 104 (451)
T 2jlq_A 49 LRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK---------SDHTGREIVDLMCHATFTTRLLS-------- 104 (451)
T ss_dssp CCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTCS---------CCCCSSCCEEEEEHHHHHHHHHH--------
T ss_pred CcEEEECCCHHHHHHHHHHhcC------ceee-eeecccc---------ccCCCCceEEEEChHHHHHHhhC--------
Confidence 4799999985 56788888742 3332 2221110 01223456888898888765421
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHH-HHHH---hccCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATE-MALR---LYAKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~k-al~~---L~a~~RwlLTGTPiq 638 (1137)
...--.+.+||+||||++ +....... .+.. ......+++|+||..
T Consensus 105 ---------------~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 105 ---------------STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPG 153 (451)
T ss_dssp ---------------CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ---------------cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCc
Confidence 011124689999999988 33332222 1111 124678999999955
No 72
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.69 E-value=0.00045 Score=56.97 Aligned_cols=34 Identities=24% Similarity=0.648 Sum_probs=27.9
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCC
Q 001153 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1137)
Q Consensus 413 ~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~ 450 (1137)
.+.|+|+.... .+.+|+|+.|..|+|..|||...
T Consensus 4 ~~~C~C~~~~~----~~~MI~Cd~C~~W~H~~Cvgi~~ 37 (52)
T 3o7a_A 4 LVTCFCMKPFA----GRPMIECNECHTWIHLSCAKIRK 37 (52)
T ss_dssp CBCSTTCCBCT----TCCEEECTTTCCEEETTTTTCCG
T ss_pred CeEEEeCCcCC----CCCEEEcCCCCccccccccCCCc
Confidence 46799987432 46899999999999999998654
No 73
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.55 E-value=0.00063 Score=59.26 Aligned_cols=54 Identities=26% Similarity=0.651 Sum_probs=38.7
Q ss_pred hhhhhhcccccccccccccccccc--cccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCD--ICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~--~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
+.+.|+|+...+ .|.+|+|+ .|..|+|..|||+..+..... .....|+|+.|..
T Consensus 9 ~~v~C~C~~~~~----~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~------------------~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRCICSSTMV----NDSMIQCEDQRCQVWQHLNCVLIPDKPGESA------------------EVPPVFYCELCRL 64 (68)
T ss_dssp CEECCTTCCCSC----CSCEEECSCTTTCEEEETTTSCCCSSTTSCC------------------CCCSSCCCHHHHH
T ss_pred CCEEeECCCCcC----CCCEEEECCCCCCCeEchhhCCCCccccccc------------------CCCCcEECcCccC
Confidence 467899987543 46799998 599999999999865321111 1235799999964
No 74
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.52 E-value=0.0058 Score=72.29 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=54.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|.- |..|+.+++.. +.+....+.-. ........+.+.+...+.+.+..
T Consensus 51 ~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~----------~~~t~~~~i~~~~~~~l~~~l~~-------- 106 (459)
T 2z83_A 51 LRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQ----------REHQGNEIVDVMCHATLTHRLMS-------- 106 (459)
T ss_dssp CCEEEEECSHHHHHHHHHHTTT------SCEEECC------------------CCCSEEEEEHHHHHHHHHS--------
T ss_pred CcEEEECchHHHHHHHHHHhcC------ceEeEEecccc----------cCCCCCcEEEEEchHHHHHHhhc--------
Confidence 4699999986 67898888862 22222111100 00112234667777776654321
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHH-HHHH---HhccCeEEEEeccCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT-EMAL---RLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~-kal~---~L~a~~RwlLTGTPiq 638 (1137)
...--.+.+||+||||... ..+... ..+. .......+++|+||-.
T Consensus 107 ---------------~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 107 ---------------PNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPG 155 (459)
T ss_dssp ---------------CC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ---------------cccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCc
Confidence 0111256899999999862 222111 1111 2245688999999964
No 75
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.49 E-value=0.00093 Score=58.22 Aligned_cols=50 Identities=22% Similarity=0.595 Sum_probs=38.6
Q ss_pred hhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 411 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 411 ~~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
.+.+.|+|+.... .+.+|||+.|..|+|..|||..... ....|+|+.|..
T Consensus 17 ~~~~~CiC~~~~~----~~~MIqCd~C~~WfH~~Cvgi~~~~-----------------------~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTCFCMKPFA----GRPMIECNECHTWIHLSCAKIRKSN-----------------------VPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCSTTCCCCT----TCCEEECTTTCCEEETTTTTCCTTS-----------------------CCSSCCCHHHHT
T ss_pred CCceEeECCCcCC----CCCEEECCCCCccccccccCcCccc-----------------------CCCcEECCCCCC
Confidence 4567899997543 4579999999999999999865421 136899999964
No 76
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.47 E-value=0.00085 Score=59.08 Aligned_cols=51 Identities=27% Similarity=0.739 Sum_probs=38.5
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
..+.|+|+...+ ....||||+.|..|+|..||+..... .....|+|+.|..
T Consensus 15 ~~~~C~C~~~~~---~g~~mI~Cd~C~~W~H~~Cvg~~~~~----------------------~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDCKCGTKDD---DGERMLACDGCGVWHHTRCIGINNAD----------------------ALPSKFLCFRCIE 65 (72)
T ss_dssp SEECCTTCCCSC---CSSCEEECSSSCEEEETTTTTCCTTS----------------------CCCSCCCCHHHHH
T ss_pred cceEeeCCCccC---CCCcEEECCCCCCccCCeeeccCccc----------------------cCCCcEECCCccC
Confidence 457899987632 22369999999999999999876421 0246899999975
No 77
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.34 E-value=0.0096 Score=73.16 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=58.7
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
..+||++|.. |..|+.+++.. +.+. |.+..-. ........+.++++..+.+.+..
T Consensus 216 ~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~---------~~~tp~~~i~~~t~~~l~~~l~~-------- 271 (618)
T 2whx_A 216 LRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK---------SDHTGREIVDLMCHATFTTRLLS-------- 271 (618)
T ss_dssp CCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS---------CCCCSSSCEEEEEHHHHHHHHHH--------
T ss_pred CeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce---------eccCCCceEEEEChHHHHHHHhc--------
Confidence 4799999986 66788887763 2232 4432210 01122345667788877764321
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhH--HHHHHHHHh--ccCeEEEEeccCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA--AATEMALRL--YAKHRWCITGTPIQR 639 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S--~~~kal~~L--~a~~RwlLTGTPiqN 639 (1137)
...--.+.+||+||||++ +... ........+ .....+++|+||-..
T Consensus 272 ---------------~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 272 ---------------STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp ---------------CSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred ---------------cccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 011234689999999998 3322 222222333 346789999999654
No 78
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.21 E-value=0.001 Score=59.60 Aligned_cols=55 Identities=27% Similarity=0.645 Sum_probs=40.6
Q ss_pred hhhhhhcccccccccccccccccc--cccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCD--ICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~--~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
..+.|+|+...+ .|.+|+|+ .|..|+|..||+....... ........|+|+.|..
T Consensus 15 ~~~~CiC~~~~~----~g~MI~CD~~~C~~W~H~~CVgi~~~~~~-----------------~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRCVCGNSLE----TDSMIQCEDPRCHVWQHVGCVILPDKPMD-----------------GNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCSSCCCCC----CSCEEECSSTTTCCEEEHHHHSCCCTTTC-----------------SCSCSCSSCCCHHHHH
T ss_pred CCEEeECCCcCC----CCCEEEECCccCCccccCEEEcccccccc-----------------ccccCCCCEECCCCCc
Confidence 467899998832 47899999 9999999999997653210 0011356899999975
No 79
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.13 E-value=0.018 Score=67.67 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=27.1
Q ss_pred ceeEEEecccccccChhHHH-HHHHHHh---ccCeEEEEeccCCCC
Q 001153 598 FWWRICLDEAQMVESNAAAA-TEMALRL---YAKHRWCITGTPIQR 639 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~-~kal~~L---~a~~RwlLTGTPiqN 639 (1137)
.+.+||+||+|++ +..... ...+..+ .....+++|+||..+
T Consensus 99 ~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 99 NWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGT 143 (440)
T ss_dssp CCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred CccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCch
Confidence 4679999999999 333211 1222222 356789999999876
No 80
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.07 E-value=0.01 Score=73.59 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=27.2
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh---ccCeEEEEeccCCCC
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQR 639 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L---~a~~RwlLTGTPiqN 639 (1137)
.+.+||+||+|++.-........+..+ .....+++|+||...
T Consensus 332 ~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 332 NYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGT 376 (673)
T ss_dssp CCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred cceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChh
Confidence 468999999999922111222223332 356889999999754
No 81
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.05 E-value=0.0014 Score=58.23 Aligned_cols=57 Identities=23% Similarity=0.559 Sum_probs=41.4
Q ss_pred hhhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 001153 410 KRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1137)
Q Consensus 410 ~~~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1137)
....+.|+|+...+ -.+.+|||+.|..|+|..||+..... +.....|+|+.|....
T Consensus 7 ~~~~~yCiC~~~~~---~~~~MI~Cd~C~~WfH~~Cvg~~~~~---------------------~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 7 ATVPVYCVCRLPYD---VTRFMIECDACKDWFHGSCVGVEEEE---------------------APDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCCCEETTTTEECC---TTSCEEECTTTCCEEEHHHHTCCTTT---------------------GGGBSSCCCHHHHHHH
T ss_pred CCCeeEEECCCcCC---CCCCEEEcCCCCCCEecccccccccc---------------------cCCCCEEECCCCcccC
Confidence 44567899996432 24689999999999999999865431 1123679999998654
Q ss_pred h
Q 001153 490 E 490 (1137)
Q Consensus 490 ~ 490 (1137)
.
T Consensus 63 ~ 63 (75)
T 3kqi_A 63 G 63 (75)
T ss_dssp C
T ss_pred C
Confidence 3
No 82
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.00 E-value=0.041 Score=69.11 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=66.6
Q ss_pred cEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 500 ~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.++||+|+--+ .+|...+-+++ ++++.+..|..... ........||++.|...|.-++-.....
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l---GLsv~~i~Gg~~~~-------~r~~ay~~DIvyGTpgrlgfDyLrd~m~-- 189 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL---GLSVGVIQHASTPA-------ERRKAYLADVTYVTNSELGFDYLRDNMA-- 189 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT---TCCEEECCTTCCHH-------HHHHHHTSSEEEEEHHHHHHHHHHHTSC--
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEEeCCCCHH-------HHHHHcCCCEEEECchhhhhHHHHHhhh--
Confidence 58999999865 36888998887 68888777753311 1122235899999988885332110000
Q ss_pred cchhhhhhcccCCCcchhcccc---ceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRI---FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i---~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1137)
+. +..+..- ...++|+||+|.+--. .+..-+++|| |++.. .++|..
T Consensus 190 -----------~~--~~~l~~r~d~~l~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY~~ 238 (997)
T 2ipc_A 190 -----------IS--PDQLVLRHDHPLHYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDLYYK 238 (997)
T ss_dssp -----------SS--TTTCCSCSSSSSCEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHHHH
T ss_pred -----------cc--hhhcccccCCCcceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHHHH
Confidence 00 0012222 5679999999954211 2334489999 88877 444443
No 83
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=95.93 E-value=0.0028 Score=59.20 Aligned_cols=35 Identities=40% Similarity=1.085 Sum_probs=29.4
Q ss_pred hhhhhhhcccccccccccccccccccccccccccccCcC
Q 001153 411 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYS 449 (1137)
Q Consensus 411 ~~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~ 449 (1137)
.+.+.|+|+...+ .|.+|+|+.|..|+|..|++..
T Consensus 26 ~d~vrCiC~~~~~----~~~mi~Cd~C~~w~H~~C~~~~ 60 (98)
T 2lv9_A 26 TDVTRCICGFTHD----DGYMICCDKCSVWQHIDCMGID 60 (98)
T ss_dssp CCBCCCTTSCCSC----SSCEEEBTTTCBEEETTTTTCC
T ss_pred CCCEEeECCCccC----CCcEEEcCCCCCcCcCcCCCCC
Confidence 4568899998754 4789999999999999999864
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.73 E-value=0.0045 Score=53.03 Aligned_cols=50 Identities=28% Similarity=0.839 Sum_probs=36.8
Q ss_pred hhh-hcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 414 VEC-ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 414 v~c-~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
..| +|+...+. .+.||||+.|..|.|..||+..... +.....|+|+.|..
T Consensus 7 ~~C~~C~~~~~~---~~~mI~Cd~C~~WfH~~Cvgl~~~~---------------------~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAA---DEFWICCDLCEMWFHGKCVKITPAR---------------------AEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCS---SSCEEECSSSCCEEETTTTTCCTTG---------------------GGGCSSCCCHHHHT
T ss_pred CCCCCCCCccCC---CCCEEEccCCCCCCCccccCcChhH---------------------hcCCCcEECCCCcC
Confidence 457 88765421 3689999999999999999875431 11236899999975
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.59 E-value=0.003 Score=56.62 Aligned_cols=53 Identities=25% Similarity=0.659 Sum_probs=39.5
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~ 488 (1137)
+.+.|+|+...+ ..+.||||+.|..|.|..||+..... +.....|+|+.|...
T Consensus 11 ~~~~C~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl~~~~---------------------~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYCLCRQPYN---VNHFMIECGLCQDWFHGSCVGIEEEN---------------------AVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCSTTSCSCC---SSSCEEEBTTTCCEEEHHHHTCCHHH---------------------HTTCSBBCCTTTTTT
T ss_pred CccEEEcCCccC---CCCceEEcCCCCCcEEeeecCccccc---------------------ccCCCeEECCCcccc
Confidence 457899987653 25789999999999999999864310 112468999999764
No 86
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.29 E-value=0.0016 Score=57.96 Aligned_cols=55 Identities=31% Similarity=0.701 Sum_probs=39.2
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 001153 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1137)
Q Consensus 413 ~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~ 488 (1137)
.+.|+|+.... .+.+|+|+.|..|+|..||+...... ..+......|+|+.|...
T Consensus 16 ~~~C~C~~~~~----~~~MI~Cd~C~~WfH~~Cvgl~~~~~-----------------~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYCICRQPHN----NRFMICCDRCEEWFHGDCVGISEARG-----------------RLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCSTTCCCCC----SSCEEECSSSCCEEEHHHHSCCHHHH-----------------HHHHHHTCCCCCHHHHHH
T ss_pred CCEEECCCccC----CCCEEEeCCCCCcEeCeEEccchhhh-----------------hhccCCCCeEECcCCcCc
Confidence 47899997653 46899999999999999998653210 001113578999999753
No 87
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.12 E-value=0.023 Score=69.76 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.4
Q ss_pred cceeecCCCccHHHHHHHHHHH
Q 001153 359 GGILADEMGLGKTVELLACIFA 380 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1137)
-.|+.--.|.|||+..|.-++.
T Consensus 24 ~~~~~apTGtGKT~a~l~p~l~ 45 (620)
T 4a15_A 24 GVALESPTGSGKTIMALKSALQ 45 (620)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3466678899999988765544
No 88
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.77 E-value=0.066 Score=67.48 Aligned_cols=104 Identities=12% Similarity=-0.007 Sum_probs=57.6
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccch
Q 001153 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1137)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1137)
.++|++|.. +..|+.+.+.+... .++....|... +. ........+|+++|.+.+.+.+...
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~---~~v~~~vG~~i-~~------~~~~~~~~~I~v~T~G~l~r~l~~~-------- 203 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMD---VKLGEEVGYSI-RF------ENKTSNKTILKYMTDGMLLREAMED-------- 203 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTT---CCBTTTEEEEE-TT------EEECCTTCSEEEEEHHHHHHHHHHS--------
T ss_pred eEEecCchHHHHHHHHHHHHHHhC---Cchhheeccee-cc------ccccCCCCCEEEECHHHHHHHHhhC--------
Confidence 588999985 45677777766552 22211111100 00 0111246789999999988764210
Q ss_pred hhhhhcccCCCcchhccccceeEEEeccccc-ccChhH--HHHHHHHHh-ccCeEEEEeccC
Q 001153 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAA--AATEMALRL-YAKHRWCITGTP 636 (1137)
Q Consensus 579 ~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~-IKN~~S--~~~kal~~L-~a~~RwlLTGTP 636 (1137)
..--...+||+||+|. .-+... ...+.+... +....+++|+|+
T Consensus 204 ---------------~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 204 ---------------HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250 (773)
T ss_dssp ---------------TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCS
T ss_pred ---------------ccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 1123568999999995 222221 122222222 345688999999
No 89
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=94.53 E-value=0.18 Score=62.50 Aligned_cols=94 Identities=17% Similarity=0.063 Sum_probs=58.6
Q ss_pred EEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchh
Q 001153 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 579 (1137)
Q Consensus 501 tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~ 579 (1137)
.+|++|.- |..|+.+.+.+. ++++..+.|....- ....-...+++++|.+.+..
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~i-------v~TpGr~~~il~~T~e~~~l-------------- 236 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVT-------VQPNGKQASHVSCTVEMCSV-------------- 236 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEEC-------CSTTCCCCSEEEEEGGGCCS--------------
T ss_pred eEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEE-------ecCCCcccceeEecHhHhhh--------------
Confidence 48999986 557999998875 56787888764321 11112246788877754321
Q ss_pred hhhhcccCCCcchhccccceeEEEecccccccChh--HHHHHHHHHhcc--CeEEEEecc
Q 001153 580 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA--KHRWCITGT 635 (1137)
Q Consensus 580 ~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~--S~~~kal~~L~a--~~RwlLTGT 635 (1137)
.-.+.+||+||+|++.+.. ......+..+.+ .+.+++|+|
T Consensus 237 ----------------~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 237 ----------------TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp ----------------SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred ----------------cccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 1246899999999986542 334455666653 234555566
No 90
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.51 E-value=0.22 Score=61.29 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=27.9
Q ss_pred ccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
+....|+.||+|||..+--+. ++..|....+++|-|=|-|
T Consensus 362 ~~~~~Fd~vIIDEAsQ~~e~~-----~lipL~~~~~~ILVGD~~Q 401 (646)
T 4b3f_X 362 LPESYFDVVVIDECAQALEAS-----CWIPLLKARKCILAGDHKQ 401 (646)
T ss_dssp SCTTCCSEEEETTGGGSCHHH-----HTTTGGGSSEEEEEECTTS
T ss_pred hhhccCCEEEEcCccccchHH-----HHhhccccceEEEcCCccc
Confidence 456679999999987654332 2333445568899999877
No 91
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.50 E-value=0.25 Score=62.21 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=54.6
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCC
Q 001153 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1137)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1137)
..++||+|+--+ .+|...+.+++ ++++.+..|..... ........||++.|-+.|.-++-.+.-.
T Consensus 153 ~~v~VvTpTreLA~Qdae~m~~l~~~l---GLsv~~i~gg~~~~-------~r~~~y~~DIvygTpgrlgfDyLrD~m~- 221 (922)
T 1nkt_A 153 NGVHIVTVNDYLAKRDSEWMGRVHRFL---GLQVGVILATMTPD-------ERRVAYNADITYGTNNEFGFDYLRDNMA- 221 (922)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHT---TCCEEECCTTCCHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTTC-
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECchHhhHHHHHhhhh-
Confidence 368999998754 47999999998 68887776643211 1112235799999988874332110000
Q ss_pred ccchhhhhhcccCCCcchhccccceeEEEeccccccc
Q 001153 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1137)
Q Consensus 575 ~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IK 611 (1137)
+ ....+..-...++|||||+.+-
T Consensus 222 ------------~--~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 222 ------------H--SLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp ------------S--SGGGCCCCCCCEEEETTHHHHH
T ss_pred ------------c--cHhhhccCCCCEEEEeChHHHH
Confidence 0 0012333467799999999764
No 92
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=94.16 E-value=0.0077 Score=49.52 Aligned_cols=23 Identities=65% Similarity=1.285 Sum_probs=19.9
Q ss_pred cccccccc-cccccccccccCcCC
Q 001153 428 KGLWVQCD-ICDAWQHADCVGYSP 450 (1137)
Q Consensus 428 ~~~~v~C~-~c~~w~h~~Cv~~~~ 450 (1137)
.+.||+|+ .|..|.|..|||...
T Consensus 15 ~~~mI~Cd~~C~~WfH~~Cvgl~~ 38 (52)
T 2kgg_A 15 KVDWVQCDGGCDEWFHQVCVGVSP 38 (52)
T ss_dssp TCCEEECTTTTCCEEETTTTTCCH
T ss_pred CCcEEEeCCCCCccCcccccCCCc
Confidence 46799999 899999999998643
No 93
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=94.08 E-value=0.18 Score=63.26 Aligned_cols=87 Identities=17% Similarity=0.091 Sum_probs=53.2
Q ss_pred cEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 500 ~tLIV~P~SLl----~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.+|||||+--+ .+|...+.+++ ++++.+..|..... ........||++.|.+.|.-++-.+..
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~l---gl~v~~i~GG~~~~-------~r~~~~~~dIvvgTpgrl~fDyLrd~~--- 183 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFL---GLTVGINLPGMPAP-------AKREAYAADITYGTNNEYGFDYLRDNM--- 183 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHT---TCCEEECCTTCCHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTT---
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhc---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECCchhhHHHHHhhh---
Confidence 58999999754 46888888887 68887777653221 111223579999998887432210000
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEeccccccc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IK 611 (1137)
.+ ....+..-...++||||||++-
T Consensus 184 ----------~~--~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 184 ----------AF--SPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp ----------CS--SGGGCCCCSCCEEEESCHHHHT
T ss_pred ----------hc--cHhHhcccCCcEEEECchHHHH
Confidence 00 0012334456799999999643
No 94
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=93.88 E-value=0.23 Score=62.43 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=52.9
Q ss_pred cEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCc
Q 001153 500 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1137)
Q Consensus 500 ~tLIV~P~SLl~----QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1137)
.+|||+|+-=+. +|...+.++. ++++.+..|..... ........||++.|-+.|.-++-.+.-.
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~l---gl~v~~i~gg~~~~-------~r~~~~~~dIv~gTpgrlgfD~L~D~m~-- 193 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFL---GLTVGLNLNSMSKD-------EKREAYAADITYSTNNELGFDYLRDNMV-- 193 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT---TCCEEECCTTSCHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTTC--
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECchhhhHHHHHHhhh--
Confidence 589999987443 5999999887 68887766653211 1111235799999998884332100000
Q ss_pred cchhhhhhcccCCCcchhccccceeEEEecccccc
Q 001153 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1137)
Q Consensus 576 ~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~I 610 (1137)
+ ....+..-...++|||||+++
T Consensus 194 -----------~--~~~~l~lr~~~~lVlDEaD~m 215 (844)
T 1tf5_A 194 -----------L--YKEQMVQRPLHFAVIDEVDSI 215 (844)
T ss_dssp -----------S--SGGGCCCCCCCEEEEETHHHH
T ss_pred -----------c--chhhhcccCCCEEEECchhhh
Confidence 0 001233345678999999985
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.81 E-value=0.57 Score=57.46 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=28.9
Q ss_pred ccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCC
Q 001153 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN 639 (1137)
+....|+.||+|||...-.+. ..+..+....+++|-|=|-|-
T Consensus 335 l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 335 LAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 445689999999997665443 123333445789999999873
No 96
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.29 E-value=0.033 Score=49.19 Aligned_cols=51 Identities=27% Similarity=0.601 Sum_probs=37.2
Q ss_pred hhhh-hcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 001153 413 RVEC-ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1137)
Q Consensus 413 ~v~c-~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1137)
...| +|+.... .+.+|+|+.|..|.|..||+..... ...+.|+|+.|....
T Consensus 18 ~~~C~~C~~~~~----~~~mi~CD~C~~wfH~~Cv~~~~~~----------------------~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDD----GSPMIGCDDCDDWYHWPCVGIMAAP----------------------PEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCS----SCCEEECSSSSSEEEHHHHTCSSCC----------------------CSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCC----CCCEEEcCCCCcccccccCCCCccC----------------------CCCCCEEChhccCch
Confidence 3457 7886642 3479999999999999999864421 124689999997643
No 97
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.17 E-value=0.019 Score=50.16 Aligned_cols=50 Identities=36% Similarity=0.743 Sum_probs=37.9
Q ss_pred hhhhhhccccccccccccccccccccc---ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDICD---AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~c~---~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~ 488 (1137)
+.+.|+|.... .|..|+|+.|+ .|.|..||+.... ..+.|+|+.|...
T Consensus 5 ~~~yC~C~~~~-----~g~MI~CD~cdC~~~WfH~~Cvgl~~~------------------------p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYCICNQVS-----YGEMVGCDNQDCPIEWFHYGCVGLTEA------------------------PKGKWYCPQCTAA 55 (70)
T ss_dssp CCCCSTTSCCC-----CSSEECCSCTTCSCCCEEHHHHTCSSC------------------------CSSCCCCHHHHHH
T ss_pred CCeEEEcCCCC-----CCCEeEeCCCCCCccCCcccccccCcC------------------------CCCCEECCCCCcc
Confidence 34679998763 35899999985 8999999985432 3578999999865
Q ss_pred hh
Q 001153 489 IE 490 (1137)
Q Consensus 489 ~~ 490 (1137)
..
T Consensus 56 ~~ 57 (70)
T 1x4i_A 56 MK 57 (70)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 98
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=92.90 E-value=0.013 Score=55.31 Aligned_cols=56 Identities=21% Similarity=0.478 Sum_probs=35.3
Q ss_pred hcccccccccccccccccc-cccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 001153 417 ICGAVSESRKYKGLWVQCD-ICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1137)
Q Consensus 417 ~c~~~~~~~~~~~~~v~C~-~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~ 488 (1137)
+|+.-..+..-.+.|++|+ .|..|-|..|||...... +... ...+..|+|+.|...
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~--------~~i~--------~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAY--------GLLT--------TEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHH--------HHHH--------HCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHH--------Hhhc--------cCCCCCEECccccCc
Confidence 3443333322346799998 999999999998653210 0000 123478999999864
No 99
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=92.76 E-value=0.051 Score=49.82 Aligned_cols=52 Identities=37% Similarity=0.750 Sum_probs=39.2
Q ss_pred hhhhhhhccccccccccccccccccccc---ccccccccCcCCCCCcccchhhhhhhcccccccccccccCcccccc-ch
Q 001153 411 RERVECICGAVSESRKYKGLWVQCDICD---AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQW-CD 486 (1137)
Q Consensus 411 ~~~v~c~c~~~~~~~~~~~~~v~C~~c~---~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-c~ 486 (1137)
.+.+.|+|+.... |.+|+|+.|+ .|.|..||+.... ..+.|+|+. |.
T Consensus 24 ~~~~yCiC~~~~~-----g~MI~CD~c~C~~eWfH~~CVgl~~~------------------------p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYCFCRNVSY-----GPMVACDNPACPFEWFHYGCVGLKQA------------------------PKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCSTTTCCCS-----SSEECCCSSSCSCSCEETTTSSCSSC------------------------TTSCCCSSHHHH
T ss_pred CCCcEEEeCCCCC-----CCEEEecCCCCccccCcCccCCCCcC------------------------CCCCccCChhhc
Confidence 4567899986532 5799999987 8999999985432 246899999 98
Q ss_pred hhhhc
Q 001153 487 ELIEA 491 (1137)
Q Consensus 487 ~~~~~ 491 (1137)
.....
T Consensus 75 ~~~k~ 79 (90)
T 2jmi_A 75 EIANQ 79 (90)
T ss_dssp HHHHH
T ss_pred chhhc
Confidence 65543
No 100
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=92.54 E-value=0.022 Score=67.82 Aligned_cols=56 Identities=29% Similarity=0.638 Sum_probs=41.0
Q ss_pred hhhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 001153 410 KRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1137)
Q Consensus 410 ~~~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1137)
....+.|+|+...+ -.+.+|||+.|..|.|..|||..... ......|+|+.|....
T Consensus 34 ~~~~~yC~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl~~~~---------------------~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 34 PPPPVYCVCRQPYD---VNRFMIECDICKDWFHGSCVGVEEHH---------------------AVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCEETTTTEECC---TTSCEEEBTTTCCEEEHHHHTCCGGG---------------------GGGEEEBCCHHHHHHH
T ss_pred CCCCeEEeCCCcCC---CCCCeEEccCCCCceeeeecCcCccc---------------------ccCCCEEECCCCcCCc
Confidence 34567899997642 24789999999999999999865421 1123679999998643
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.32 E-value=1.1 Score=56.50 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=29.2
Q ss_pred ccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCC
Q 001153 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN 639 (1137)
+....|+.||+|||..+-.+. ..+..+....+++|-|=|-|-
T Consensus 511 l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 511 LAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp TTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 445679999999997764432 223334456789999999873
No 102
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=92.22 E-value=0.015 Score=68.15 Aligned_cols=53 Identities=26% Similarity=0.666 Sum_probs=39.0
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 001153 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1137)
Q Consensus 413 ~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1137)
.+.|+|+...+ -.+.+|||+.|..|.|..|||..... +.....|+|+.|....
T Consensus 5 ~~yCiC~~~~d---~~~~MIqCD~C~~WfH~~CVgi~~~~---------------------~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 5 PVYCLCRLPYD---VTRFMIECDMCQDWFHGSCVGVEEEK---------------------AADIDLYHCPNCEVLH 57 (447)
T ss_dssp CEETTTTEECC---TTSCEEECTTTCCEEEHHHHTCCHHH---------------------HTTEEECCCHHHHHHH
T ss_pred CeEEeCCCcCC---CCCCeEEcCCCCcccccccCCcCccc---------------------ccCCCEEECCCCcccc
Confidence 46799987542 25789999999999999999864310 1123679999998654
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=92.20 E-value=0.023 Score=58.37 Aligned_cols=54 Identities=26% Similarity=0.679 Sum_probs=39.2
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1137)
..+.|+|+...+ -.+.||+|+.|..|.|..|||..... ....+.|+|+.|....
T Consensus 7 ~~~~C~C~~~~~---~~~~mi~Cd~C~~WfH~~Cv~~~~~~---------------------~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYCICKTPED---ESKFYIGCDRCQNWYHGRCVGILQSE---------------------AELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEETTTTEECC---TTSCEEECTTTCCEEEHHHHTCCHHH---------------------HTTCSSCCCHHHHHHH
T ss_pred CCcEeeCCCCCC---CCCCEeECCCCCchhChhhcCCchhh---------------------ccCccCeecCCCcchh
Confidence 346789987643 24679999999999999999754310 1135689999997643
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.10 E-value=0.076 Score=48.77 Aligned_cols=47 Identities=36% Similarity=0.914 Sum_probs=36.1
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~--c~-~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
+.+.|+|+... .|.+|+|+. |. .|.|..||+.... ..+.|+|+.|..
T Consensus 35 e~~yCiC~~~~-----~g~MI~CD~~dC~~~WfH~~CVgl~~~------------------------p~g~W~Cp~C~~ 84 (91)
T 1weu_A 35 EPTYCLCHQVS-----YGEMIGCDNPDCSIEWFHFACVGLTTK------------------------PRGKWFCPRCSQ 84 (91)
T ss_dssp CCBCSTTCCBC-----CSCCCCCSCSSCSCCCCCSTTTTCSSC------------------------CCSSCCCTTTCC
T ss_pred CCcEEECCCCC-----CCCEeEecCCCCCCCCEecccCCcCcC------------------------CCCCEECcCccC
Confidence 45679998754 268999999 66 7999999985432 246899999965
No 105
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.46 E-value=0.057 Score=55.99 Aligned_cols=33 Identities=30% Similarity=0.845 Sum_probs=26.1
Q ss_pred hcccccccccccccccccccccccccccccCcC
Q 001153 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYS 449 (1137)
Q Consensus 417 ~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~ 449 (1137)
+|+..-.+..+.+.||+|+.|..|.|+.|+|-.
T Consensus 7 iC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~ 39 (183)
T 3lqh_A 7 LCDKCYDDDDYESKMMQCGKCDRWVHSKCENLS 39 (183)
T ss_dssp TTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCC
T ss_pred CCcCccCCcccCCCeEECCCCCcccchhccccC
Confidence 477665555556779999999999999999753
No 106
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=91.39 E-value=0.11 Score=45.56 Aligned_cols=47 Identities=36% Similarity=0.914 Sum_probs=35.9
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~--c~-~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
+...|+|+... .|.+|+|+. |. .|.|..||+.... ..+.|+|+.|..
T Consensus 15 ~~~~C~C~~~~-----~g~MI~CD~~~C~~~wfH~~Cvgl~~~------------------------p~g~w~Cp~C~~ 64 (71)
T 1wen_A 15 EPTYCLCHQVS-----YGEMIGCDNPDCSIEWFHFACVGLTTK------------------------PRGKWFCPRCSQ 64 (71)
T ss_dssp SCCCSTTCCCS-----CSSEECCSCSSCSCCCEETTTTTCSSC------------------------CSSCCCCTTTSS
T ss_pred CCCEEECCCCC-----CCCEeEeeCCCCCCccEecccCCcCcC------------------------CCCCEECCCCCc
Confidence 45678998753 278999999 77 6999999985432 247899999975
No 107
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.25 E-value=0.013 Score=50.43 Aligned_cols=34 Identities=24% Similarity=0.620 Sum_probs=24.6
Q ss_pred hcccccccccccccccccc-cccccccccccCcCC
Q 001153 417 ICGAVSESRKYKGLWVQCD-ICDAWQHADCVGYSP 450 (1137)
Q Consensus 417 ~c~~~~~~~~~~~~~v~C~-~c~~w~h~~Cv~~~~ 450 (1137)
+|+.-..+..-...||+|+ .|..|.|..|||...
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~ 44 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTE 44 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCH
Confidence 3444333333356799999 999999999998654
No 108
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.72 E-value=1.2 Score=56.15 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=27.1
Q ss_pred ceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCC
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiq 638 (1137)
.|+.||+|||+.+-.+. ..+..+....+++|-|=|-|
T Consensus 517 ~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 517 KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 79999999998875332 22333445678999999987
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.20 E-value=1.4 Score=46.89 Aligned_cols=36 Identities=25% Similarity=0.097 Sum_probs=24.6
Q ss_pred cceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEecc
Q 001153 597 IFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1137)
Q Consensus 597 i~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGT 635 (1137)
-.++.||+||+|.+... ....+..| +..-.++++|-
T Consensus 88 ~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 35789999999998643 33344443 23678899996
No 110
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=89.80 E-value=0.11 Score=44.17 Aligned_cols=47 Identities=32% Similarity=0.724 Sum_probs=35.6
Q ss_pred hhhhhhccccccccccccccccccccc---ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDICD---AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~c~---~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
+.+.|+|+... .|.+|+|+.|+ .|.|..||+.... ..+.|+|+.|..
T Consensus 10 e~~yC~C~~~~-----~g~MI~CD~c~C~~~WfH~~Cvgl~~~------------------------p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYCLCNQVS-----YGEMIGCDNEQCPIEWFHFSCVSLTYK------------------------PKGKWYCPKCRG 59 (62)
T ss_dssp CCEETTTTEEC-----CSEEEECSCTTCSSCEEETGGGTCSSC------------------------CSSCCCCHHHHT
T ss_pred CCcEEECCCCC-----CCCeeeeeCCCCCcccEecccCCcCcC------------------------CCCCEECcCccc
Confidence 45678998753 26799999955 8999999985432 247899999964
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=89.67 E-value=0.12 Score=43.66 Aligned_cols=47 Identities=34% Similarity=0.842 Sum_probs=35.5
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~--c~-~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
+.+.|+|+... .|..|+|+. |. .|.|..||+.... ..+.|+|+.|..
T Consensus 8 e~~yC~C~~~~-----~g~mi~CD~~~C~~~wfH~~Cvgl~~~------------------------p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYCLCHQVS-----YGEMIGCDNPDCPIEWFHFACVDLTTK------------------------PKGKWFCPRCVQ 57 (59)
T ss_dssp CCEETTTTEEC-----CSEEEECSCTTCSSCEEETGGGTCSSC------------------------CSSCCCCHHHHC
T ss_pred CCcEEECCCCC-----CCCeeEeeCCCCCCCCEecccCCcccC------------------------CCCCEECcCccC
Confidence 44678998653 378999999 76 6999999985432 246799999963
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.45 E-value=1.3 Score=53.77 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=30.9
Q ss_pred cceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCC
Q 001153 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 597 i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN 639 (1137)
..++.||+||||++... .....+..++...++++.|-|-|.
T Consensus 278 ~~~dvlIIDEasml~~~--~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDA--LMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp CSCSEEEECCGGGCCHH--HHHHHHTTSCTTCEEEEEECTTSC
T ss_pred ccCCEEEEcCccCCCHH--HHHHHHHhCcCCCEEEEEeccccc
Confidence 36789999999999632 333444556678899999999884
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.72 E-value=1.1 Score=46.12 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=24.3
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEecc
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGT 635 (1137)
.++.||+||+|.+... ....+..+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 4789999999998322 33344433 44678999998
No 114
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=88.25 E-value=0.17 Score=42.81 Aligned_cols=47 Identities=36% Similarity=0.914 Sum_probs=35.4
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 412 ~~v~c~c~~~~~~~~~~~~~v~C~~--c~-~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
+.+.|+|+... .|..|+|+. |. .|.|..||+.... ..+.|+|+.|..
T Consensus 9 e~~~C~C~~~~-----~g~mi~CD~cdC~~~wfH~~Cvgl~~~------------------------p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYCLCHQVS-----YGEMIGCDNPDCSIEWFHFACVGLTTK------------------------PRGKWFCPRCSQ 58 (60)
T ss_dssp CCEETTTTEEC-----CSEEEECSCTTCSSCEEETGGGTCSSC------------------------CSSCCCCHHHHC
T ss_pred CCCEEECCCcC-----CCCEEEeCCCCCCCceEehhcCCCCcC------------------------CCCCEECcCccC
Confidence 45678998753 278999999 55 8999999985432 247899999964
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.07 E-value=2.9 Score=44.29 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=24.5
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEecc
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGT 635 (1137)
.++.|++||||.+... .. ..+..| .....+++||-
T Consensus 101 ~~dvViIDEaQF~~~~--~V-~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD--IV-EVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTT--HH-HHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHH--HH-HHHHHHhhCCCEEEEEec
Confidence 4789999999998533 22 445553 34668888886
No 116
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=86.34 E-value=0.21 Score=59.23 Aligned_cols=41 Identities=24% Similarity=0.565 Sum_probs=31.4
Q ss_pred ccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 001153 427 YKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1137)
Q Consensus 427 ~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~ 488 (1137)
....||+||.|+.|.|..|||..... +.....|+||.|...
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi~~~~---------------------a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGLEQFE---------------------YYLYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTCCGGG---------------------TTTEEECCCTTTHHH
T ss_pred cCCCEEECCCCCcCCCCcCCCCChhH---------------------hcCCCeEECcCCcCC
Confidence 34679999999999999999865421 112467999999864
No 117
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=79.26 E-value=4.7 Score=47.21 Aligned_cols=40 Identities=13% Similarity=-0.078 Sum_probs=28.5
Q ss_pred ceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCC
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN 639 (1137)
.++.||+||+|++-. ......+..+....++++.|=|-|-
T Consensus 128 ~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 128 KCRVLICDEVSMYDR--KLFKILLSTIPPWCTIIGIGDNKQI 167 (459)
T ss_dssp SCSEEEESCGGGCCH--HHHHHHHHHSCTTCEEEEEECTTSC
T ss_pred CCCEEEEECchhCCH--HHHHHHHHhccCCCEEEEECCHHHc
Confidence 478999999999842 2333333445667899999998883
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=78.21 E-value=7.5 Score=41.62 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=23.6
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEecc
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGT 635 (1137)
.++.|++||||.+.. ..+.+..+ .....+++||=
T Consensus 90 ~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEECC
T ss_pred cCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEec
Confidence 478999999999963 44444443 24567888874
No 119
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=78.08 E-value=8.6 Score=39.73 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=31.5
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEecc--CCC----CChhhhHhhhhhc
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT--PIQ----RKLDDLYGLLRFL 651 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTGT--Piq----N~l~DL~sLL~FL 651 (1137)
.++.||+||||.+... ....+..| .....++++|- .++ +...+|..+.+.+
T Consensus 81 ~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 4799999999998532 23445553 34567888885 333 3445555555444
No 120
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=77.88 E-value=4.9 Score=47.14 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=28.1
Q ss_pred cceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCC
Q 001153 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1137)
Q Consensus 597 i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN 639 (1137)
...+.||+||+.++-. ......+..+++ .++++.|=|-|=
T Consensus 233 ~~~d~liiDE~sm~~~--~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 233 CQFKRLFIDEGLMLHT--GCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCCSEEEEETGGGSCH--HHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred CcCCEEEEeCcccCCH--HHHHHHHHhCCC-CEEEEecCcccc
Confidence 4588999999999843 233333344455 899999998773
No 121
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=77.69 E-value=0.55 Score=47.21 Aligned_cols=83 Identities=5% Similarity=-0.032 Sum_probs=53.6
Q ss_pred chHHHHHhHHHHHHHHHHhhhhh---hhHHHHHH--HHHHHHHhhhcCCCCcCe-----------------eEEecCCcC
Q 001153 823 RKLVMALNGLAGIALIEKNLSQA---VSLYKEAM--AVVEEHSEDFRLDPLLNI-----------------HLHHNLTEI 880 (1137)
Q Consensus 823 rkvLifsq~~a~L~iLe~~l~~a---~~~y~~~l--~~~~~~~~~f~~D~~~~l-----------------h~~~Nl~dw 880 (1137)
.++|||++.....+.+...+... +..+.+.+ ..+.+..+.|+.+....| .+.+++ .|
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~-p~ 109 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDM-PR 109 (170)
Confidence 68999999999998888877543 22333332 244555566664443211 333343 59
Q ss_pred Ccchhhhhh-hhhhcCCCCceEEEEcccC
Q 001153 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1137)
Q Consensus 881 np~~d~QA~-r~~riGQ~~~v~v~rl~~~ 908 (1137)
++..-.|+. |++|.||+..+ +-+++.
T Consensus 110 ~~~~~~qr~GR~~R~g~~g~~--~~~~~~ 136 (170)
T 2yjt_D 110 SGDTYLHRIGRTARAGRKGTA--ISLVEA 136 (170)
Confidence 999999999 99999986554 444443
No 122
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=70.43 E-value=0.93 Score=46.77 Aligned_cols=84 Identities=7% Similarity=-0.078 Sum_probs=50.8
Q ss_pred chHHHHHhHHHHHHHHHHhhhhhh---hHHHHH--HHHHHHHHhhhcCCCC-----------------cCeeEEecCCcC
Q 001153 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTEI 880 (1137)
Q Consensus 823 rkvLifsq~~a~L~iLe~~l~~a~---~~y~~~--l~~~~~~~~~f~~D~~-----------------~~lh~~~Nl~dw 880 (1137)
.++|||++.....+.+...+.... ..+.+. ...+++..+.|+.+.. ....+.+++ .|
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~-p~ 133 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM-PE 133 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSC-CS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCC-CC
Confidence 589999999999998888775431 112111 2244445555543332 223445555 49
Q ss_pred Ccchhhhhh-hhhhcCCCCceEEEEcccCC
Q 001153 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1137)
Q Consensus 881 np~~d~QA~-r~~riGQ~~~v~v~rl~~~~ 909 (1137)
++....|+. |+.|.||+- .++.+++..
T Consensus 134 ~~~~~~qr~GR~gR~g~~g--~~i~l~~~~ 161 (191)
T 2p6n_A 134 EIENYVHRIGRTGCSGNTG--IATTFINKA 161 (191)
T ss_dssp SHHHHHHHHTTSCC---CC--EEEEEECTT
T ss_pred CHHHHHHHhCccccCCCCc--EEEEEEcCc
Confidence 999999999 999999964 455566643
No 123
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=69.62 E-value=2.1 Score=43.04 Aligned_cols=83 Identities=6% Similarity=-0.068 Sum_probs=53.3
Q ss_pred chHHHHHhHHHHHHHHHHhhhhhh---hHHHHH--HHHHHHHHhhhcCCCC-----------------cCeeEEecCCcC
Q 001153 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTEI 880 (1137)
Q Consensus 823 rkvLifsq~~a~L~iLe~~l~~a~---~~y~~~--l~~~~~~~~~f~~D~~-----------------~~lh~~~Nl~dw 880 (1137)
.+++||++.....+.+...+.... ..|.+. ...++...+.|+.+.. ....+++++ .|
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~-p~ 110 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM-PE 110 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC-CS
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC-CC
Confidence 689999999999998888776531 112221 2344555556654432 122344444 59
Q ss_pred Ccchhhhhh-hhhhcCCCCceEEEEcccC
Q 001153 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1137)
Q Consensus 881 np~~d~QA~-r~~riGQ~~~v~v~rl~~~ 908 (1137)
++..-.|+. |++|.||+-. ++-+++.
T Consensus 111 ~~~~~~qr~GR~~R~g~~g~--~~~~~~~ 137 (172)
T 1t5i_A 111 DSDTYLHRVARAGRFGTKGL--AITFVSD 137 (172)
T ss_dssp SHHHHHHHHHHHTGGGCCCE--EEEEECS
T ss_pred CHHHHHHHhcccccCCCCcE--EEEEEcC
Confidence 999999999 9999998644 4445543
No 124
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=69.26 E-value=1.3 Score=42.70 Aligned_cols=19 Identities=42% Similarity=1.067 Sum_probs=17.0
Q ss_pred ccccccccccccccccCcC
Q 001153 431 WVQCDICDAWQHADCVGYS 449 (1137)
Q Consensus 431 ~v~C~~c~~w~h~~Cv~~~ 449 (1137)
.|+|+.|+.|.|..|++..
T Consensus 2 mi~c~~c~~w~H~~c~~~~ 20 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLS 20 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCC
T ss_pred ccccccCCCccCCcccccC
Confidence 5899999999999998754
No 125
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=69.15 E-value=1.9 Score=44.09 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=53.1
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhh---hhHHHHHH--HHHHHHHhhhcCCCC-----------------cCeeEEecCCc
Q 001153 822 LRKLVMALNGLAGIALIEKNLSQA---VSLYKEAM--AVVEEHSEDFRLDPL-----------------LNIHLHHNLTE 879 (1137)
Q Consensus 822 ~rkvLifsq~~a~L~iLe~~l~~a---~~~y~~~l--~~~~~~~~~f~~D~~-----------------~~lh~~~Nl~d 879 (1137)
..++|||++.....+.+...+... +..+.+.+ ..+++..+.|+.... ....+.+++ .
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~-p 124 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL-P 124 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC-C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC-C
Confidence 368999999999999988877653 12222222 244444555543332 122344444 5
Q ss_pred CCcchhhhhh-hhhhcCCCCceEEEEcccCC
Q 001153 880 ILPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1137)
Q Consensus 880 wnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~ 909 (1137)
|++..-.|+. |+.|.|++ ..++.+++..
T Consensus 125 ~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 153 (185)
T 2jgn_A 125 SDIEEYVHRIGRTGRVGNL--GLATSFFNER 153 (185)
T ss_dssp SSHHHHHHHHTTBCCTTSC--EEEEEEECGG
T ss_pred CCHHHHHHHccccCCCCCC--cEEEEEEchh
Confidence 9999999999 99999975 5666667654
No 126
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=67.29 E-value=2.4 Score=42.06 Aligned_cols=84 Identities=5% Similarity=-0.019 Sum_probs=53.7
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhh---hhHHHHH--HHHHHHHHhhhcCCCC-----------------cCeeEEecCCc
Q 001153 822 LRKLVMALNGLAGIALIEKNLSQA---VSLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTE 879 (1137)
Q Consensus 822 ~rkvLifsq~~a~L~iLe~~l~~a---~~~y~~~--l~~~~~~~~~f~~D~~-----------------~~lh~~~Nl~d 879 (1137)
..++|||++.....+.+.+.+... +..+.+. ...+....+.|+.+.. ....+.+++ .
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~-p 113 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL-P 113 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC-C
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC-C
Confidence 368999999999998888877643 1122221 2344555555654432 122344444 5
Q ss_pred CCcchhhhhh-hhhhcCCCCceEEEEcccC
Q 001153 880 ILPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1137)
Q Consensus 880 wnp~~d~QA~-r~~riGQ~~~v~v~rl~~~ 908 (1137)
|++..-.|+. |++|.||+. .++.+++.
T Consensus 114 ~~~~~~~qr~GR~~R~g~~g--~~~~~~~~ 141 (163)
T 2hjv_A 114 LEKESYVHRTGRTGRAGNKG--KAISFVTA 141 (163)
T ss_dssp SSHHHHHHHTTTSSCTTCCE--EEEEEECG
T ss_pred CCHHHHHHhccccCcCCCCc--eEEEEecH
Confidence 9999999999 999999864 45555554
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=66.09 E-value=38 Score=37.56 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=18.3
Q ss_pred cceeecCCCccHHHHHHHHHHHh
Q 001153 359 GGILADEMGLGKTVELLACIFAH 381 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~ 381 (1137)
+-+|.-+.|.|||..+.++....
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHHH
Confidence 45777789999999988877553
No 128
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=62.33 E-value=26 Score=43.68 Aligned_cols=103 Identities=8% Similarity=-0.022 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhH---HHHHHHHHHHH--Hhhhc------------
Q 001153 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEAMAVVEEH--SEDFR------------ 864 (1137)
Q Consensus 802 t~eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~---y~~~l~~~~~~--~~~f~------------ 864 (1137)
+..+-...++..+.. ..+..+.+|||++.....+.|...|...... +.+-...++.. ...++
T Consensus 455 t~~eK~~al~~~I~~-~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAg 533 (822)
T 3jux_A 455 TQKEKYEKIVEEIEK-RYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAG 533 (822)
T ss_dssp SHHHHHHHHHHHHHH-HHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTT
T ss_pred cHHHHHHHHHHHHHH-HhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhh
Confidence 555555555554432 2234589999999999999999887664211 11111111111 11221
Q ss_pred --CCCC--------cCeeEEecCCcCCcchhhhhh-hhhhcCCCCceEEEEccc
Q 001153 865 --LDPL--------LNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFK 907 (1137)
Q Consensus 865 --~D~~--------~~lh~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~ 907 (1137)
+|.- .-+|+...-..-++..+.|.. |+-|.|++ +...-+++
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~--G~a~~fvs 585 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDP--GESIFFLS 585 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCC--CEEEEEEE
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCC--eeEEEEec
Confidence 1211 223544433346778899999 99998875 44443443
No 129
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=57.13 E-value=4.3 Score=40.30 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=50.5
Q ss_pred chHHHHHhHHHHHHHHHHhhhhhh---hHHHHH--HHHHHHHHhhhcCCCC-----------------cCeeEEecCCcC
Q 001153 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTEI 880 (1137)
Q Consensus 823 rkvLifsq~~a~L~iLe~~l~~a~---~~y~~~--l~~~~~~~~~f~~D~~-----------------~~lh~~~Nl~dw 880 (1137)
.+++||++.....+.+...+.... ..+.+. ...++...+.|+.... ....+.+++ .|
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~-p~ 109 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL-PA 109 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSC-CS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCC-CC
Confidence 689999999999988888776531 112221 2344455555554433 122334444 59
Q ss_pred Ccchhhhhh-hhhhcCCCCceEEEEcccCCc
Q 001153 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIHS 910 (1137)
Q Consensus 881 np~~d~QA~-r~~riGQ~~~v~v~rl~~~~t 910 (1137)
++..-.|+. |+.|.|++ ..++.+++...
T Consensus 110 ~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 138 (165)
T 1fuk_A 110 NKENYIHRIGRGGRFGRK--GVAINFVTNED 138 (165)
T ss_dssp SGGGGGGSSCSCC-------CEEEEEEETTT
T ss_pred CHHHHHHHhcccccCCCC--ceEEEEEcchH
Confidence 999999999 99999975 45666777653
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=57.01 E-value=8.2 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.070 Sum_probs=17.4
Q ss_pred cceeecCCCccHHHHHHHHHHH
Q 001153 359 GGILADEMGLGKTVELLACIFA 380 (1137)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1137)
+-+|.-+.|.|||..+-++...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4588899999999988766543
No 131
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=51.90 E-value=5.1 Score=41.02 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=23.4
Q ss_pred hhhhcccccccccccccccccccccccccccccCcCC
Q 001153 414 VECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1137)
Q Consensus 414 v~c~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~ 450 (1137)
..|.||...+ +.-..+||..|..|-|..|+.+..
T Consensus 6 ~yCYCG~~~~---~~~~mLqC~~C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 6 GSVDEENGRQ---LGEVELQCGICTKWFTADTFGIDT 39 (177)
T ss_dssp -----CTTCC---TTSCEEECTTTCCEEEGGGGTCCC
T ss_pred eEEEcCCCCC---CCceeEeeccccceecHHHhcccc
Confidence 4688997654 456789999999999999997543
No 132
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=48.74 E-value=44 Score=35.34 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=21.0
Q ss_pred ceeEEEecccccccChhHHHHHHHHHh-ccCeEEEEec
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITG 634 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L-~a~~RwlLTG 634 (1137)
..+.|++||||.+... ....+..| ....++++.|
T Consensus 101 ~~dvV~IDEaQFf~~~---~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDE---IVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTH---HHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEechhcCCHH---HHHHHHHHHHCCCEEEEee
Confidence 4579999999999753 22333332 3445666665
No 133
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=45.39 E-value=42 Score=41.27 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.4
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYE 532 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~ 532 (1137)
+|+|||+|.. +..||.+|+..|++ .-.|..|.
T Consensus 54 ~~~lvv~~~~~~A~ql~~el~~~~~--~~~V~~fp 86 (664)
T 1c4o_A 54 RPALVLAPNKILAAQLAAEFRELFP--ENAVEYFI 86 (664)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCT--TSEEEECC
T ss_pred CCEEEEecCHHHHHHHHHHHHHHCC--CCeEEEcC
Confidence 5899999986 56899999999997 34565554
No 134
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=38.94 E-value=18 Score=30.08 Aligned_cols=39 Identities=28% Similarity=0.723 Sum_probs=29.1
Q ss_pred ccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 001153 429 GLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1137)
Q Consensus 429 ~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1137)
|..+.|+.|..|.|..|++.... ....+.+.|+.|....
T Consensus 15 g~ll~Cd~C~~~fH~~Cl~ppl~----------------------~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 15 GQLLMCDTCSRVYHLDCLDPPLK----------------------TIPKGMWICPRCQDQM 53 (60)
T ss_dssp SSCEECSSSSCEECGGGSSSCCS----------------------SCCCSCCCCHHHHHHH
T ss_pred CcEEEcCCCCcCEECCcCCCCcC----------------------CCCCCceEChhccChh
Confidence 57899999999999999863211 0135678999997644
No 135
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=38.07 E-value=10 Score=35.71 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=22.1
Q ss_pred ccccccccccccccccccccccccCcCC
Q 001153 423 ESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1137)
Q Consensus 423 ~~~~~~~~~v~C~~c~~w~h~~Cv~~~~ 450 (1137)
++..+...+++|+.|+.|.|..|+++..
T Consensus 67 ~~~~~~~~m~~C~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 67 ETQDFEKKLMECCICNEIVHPGCLQMDG 94 (117)
T ss_dssp HHCCGGGSCEEETTTCCEECGGGCCSCC
T ss_pred cccccCcceEEeeecCCeEECCCCCCCc
Confidence 3344556689999999999999997654
No 136
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=33.28 E-value=13 Score=38.69 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=53.6
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhhh---hHHHHH--HHHHHHHHhhhcCCCC-----------------cCeeEEecCCc
Q 001153 822 LRKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTE 879 (1137)
Q Consensus 822 ~rkvLifsq~~a~L~iLe~~l~~a~---~~y~~~--l~~~~~~~~~f~~D~~-----------------~~lh~~~Nl~d 879 (1137)
..++|||++.....+.+...+.... ..+.+. ...++...+.|+.+.. ....+.+++ .
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~-p 109 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRL-P 109 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSC-C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCC-C
Confidence 3699999999999988888775431 112111 2244555555554432 122334444 4
Q ss_pred CCcchhhhhh-hhhhcCCCCceEEEEcccCC
Q 001153 880 ILPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1137)
Q Consensus 880 wnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~ 909 (1137)
|++..-.|.. |+.|.|++ +.++.+++..
T Consensus 110 ~~~~~~~qr~GR~gR~g~~--g~~~~l~~~~ 138 (212)
T 3eaq_A 110 DRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 138 (212)
T ss_dssp SSHHHHHHHHTTBCCCC----BEEEEEECGG
T ss_pred cCHHHHHHHhcccCCCCCC--CeEEEEEchh
Confidence 8999999999 99999965 6777777764
No 137
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=32.76 E-value=93 Score=38.12 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=25.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEc
Q 001153 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYE 532 (1137)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~EI~k~~~~g~L~V~vy~ 532 (1137)
+|+|||+|.. ...||.+|+..|++ .-.|..|.
T Consensus 58 ~~~lvv~~~~~~A~~l~~el~~~~~--~~~v~~fp 90 (661)
T 2d7d_A 58 KPTLVIAHNKTLAGQLYSEFKEFFP--NNAVEYFV 90 (661)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHCT--TSEEEEEC
T ss_pred CCEEEEECCHHHHHHHHHHHHHHcC--CCcEEEcc
Confidence 5899999986 56799999999997 34666554
No 138
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=31.03 E-value=47 Score=38.04 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=36.8
Q ss_pred hccccceeEEEecccccccChhHHHHHHHH-Hhc--cCeEEEEeccCCCCChhhhHhhhhhc
Q 001153 593 LLTRIFWWRICLDEAQMVESNAAAATEMAL-RLY--AKHRWCITGTPIQRKLDDLYGLLRFL 651 (1137)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~S~~~kal~-~L~--a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1137)
.+.....+.+|+||+|.+++.. ....++. .+. ...++++++||-..+ -+|.+..-.
T Consensus 268 slrG~~~~~viiDE~a~~~~~~-el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a 326 (385)
T 2o0j_A 268 AVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAA 326 (385)
T ss_dssp HHHTSCCSEEEEESGGGSTTHH-HHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHH
T ss_pred CccCCCCCEEEechhhhcCCCH-HHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHH
Confidence 3566677899999999999732 3334443 233 347899999997653 555555433
No 139
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.42 E-value=26 Score=31.82 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=32.3
Q ss_pred hcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 417 ~c~~~~~~~~~~~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
+|+...+ .+..|.|+.|..|.|..|++.... ....+.++|+.|..
T Consensus 21 vC~~~~~----~~~ll~CD~C~~~~H~~Cl~Ppl~----------------------~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 21 VCSRGDE----DDKLLFCDGCDDNYHIFCLLPPLP----------------------EIPRGIWRCPKCIL 65 (92)
T ss_dssp SSCCSGG----GGGCEECTTTCCEECSSSSSSCCS----------------------SCCSSCCCCHHHHH
T ss_pred cCCCcCC----CCCEEEcCCCCchhccccCCCCcc----------------------cCCCCCcCCccCcC
Confidence 5766543 357899999999999999862211 12457889999975
No 140
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.29 E-value=27 Score=28.54 Aligned_cols=20 Identities=35% Similarity=0.793 Sum_probs=17.8
Q ss_pred ccccccccccccccccccCc
Q 001153 429 GLWVQCDICDAWQHADCVGY 448 (1137)
Q Consensus 429 ~~~v~C~~c~~w~h~~Cv~~ 448 (1137)
|..+.|+.|..+.|..|++.
T Consensus 19 g~ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 19 GQLLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp SCCEECSSSSCEECSSSSSS
T ss_pred CeEEEcCCCCcceECccCCC
Confidence 57899999999999999863
No 141
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=28.55 E-value=12 Score=41.74 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred chHHHHHhHHHHHHHHHHhhhhh---hhHHHHHH--HHHHHHHhhhcCCCCc-----------------CeeEEecCCcC
Q 001153 823 RKLVMALNGLAGIALIEKNLSQA---VSLYKEAM--AVVEEHSEDFRLDPLL-----------------NIHLHHNLTEI 880 (1137)
Q Consensus 823 rkvLifsq~~a~L~iLe~~l~~a---~~~y~~~l--~~~~~~~~~f~~D~~~-----------------~lh~~~Nl~dw 880 (1137)
.+++||++.......+.+.+... +..+.+.+ ..+.+..+.|+.+... ...+.+++ .|
T Consensus 260 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~-p~ 338 (394)
T 1fuu_A 260 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL-PA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC-CC
Confidence 46777777777777666665443 22233322 2344444555433321 11233333 48
Q ss_pred Ccchhhhhh-hhhhcCCCCceEEEEcccCC
Q 001153 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1137)
Q Consensus 881 np~~d~QA~-r~~riGQ~~~v~v~rl~~~~ 909 (1137)
++..-.|+. ||+|.|++- .++.+++..
T Consensus 339 s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 366 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKG--VAINFVTNE 366 (394)
T ss_dssp ------------------------------
T ss_pred CHHHHHHHcCcccCCCCCc--eEEEEEchh
Confidence 888999999 999999764 455556554
No 142
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.97 E-value=21 Score=28.51 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=17.1
Q ss_pred ccccccccccccccccccC
Q 001153 429 GLWVQCDICDAWQHADCVG 447 (1137)
Q Consensus 429 ~~~v~C~~c~~w~h~~Cv~ 447 (1137)
+..+.|+.|..|.|..|+.
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLR 31 (51)
T ss_dssp SCCEECTTTCCEECHHHHC
T ss_pred CCEEECCCCChhhCcccCC
Confidence 5689999999999999985
No 143
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=26.25 E-value=46 Score=40.38 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=32.4
Q ss_pred ceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCCh
Q 001153 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 641 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l 641 (1137)
.++.||+|||+|+.. ......+..++...+++|-|=|-|--.
T Consensus 262 ~~d~lIIDEAsml~~--~~~~~Ll~~l~~~~~liLvGD~~QL~~ 303 (608)
T 1w36_D 262 HLDVLVVDEASMIDL--PMMSRLIDALPDHARVIFLGDRDQLAS 303 (608)
T ss_dssp SCSEEEECSGGGCBH--HHHHHHHHTCCTTCEEEEEECTTSGGG
T ss_pred CCCEEEEechhhCCH--HHHHHHHHhCCCCCEEEEEcchhhcCC
Confidence 688999999999862 234555666778899999999877543
No 144
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=25.30 E-value=46 Score=28.16 Aligned_cols=37 Identities=27% Similarity=0.533 Sum_probs=28.0
Q ss_pred ccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 429 GLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 429 ~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
|..+.|+.|..+.|..|++.... ....+.+.|+.|..
T Consensus 18 g~ll~CD~C~~~fH~~Cl~ppl~----------------------~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 18 GELICCDGCPRAFHLACLSPPLR----------------------EIPSGTWRCSSCLQ 54 (66)
T ss_dssp SSCEECSSCCCEECTTTSSSCCS----------------------SCCSSCCCCHHHHH
T ss_pred CCEEEcCCCChhhcccccCCCcC----------------------cCCCCCeECccccC
Confidence 56899999999999999863211 11357889999975
No 145
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=24.25 E-value=18 Score=36.06 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=45.3
Q ss_pred chHHHHHhHHHHHHHHHHhhhhhh---hHHHHH--HHHHHHHHhhhcCCCCc---------------Ce--eEEecCCcC
Q 001153 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPLL---------------NI--HLHHNLTEI 880 (1137)
Q Consensus 823 rkvLifsq~~a~L~iLe~~l~~a~---~~y~~~--l~~~~~~~~~f~~D~~~---------------~l--h~~~Nl~dw 880 (1137)
.++|||++.......+...+.... ..+.+. ...+....+.|+.+... .+ .+.+++ .|
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~-p~ 113 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL-PV 113 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSC-CC
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCC-CC
Confidence 588999999998888888776531 112111 23445555556544321 22 233333 45
Q ss_pred Cc------chhhhhh-hhhhcCCCCceEEEEcccCCc
Q 001153 881 LP------MVANCAT-ELSQNEQHFPGCSEKAFKIHS 910 (1137)
Q Consensus 881 np------~~d~QA~-r~~riGQ~~~v~v~rl~~~~t 910 (1137)
+| ..-.|.. |+.|.|+ ++.++.+++.+.
T Consensus 114 ~~~~~~~~~~~~qr~GR~gR~g~--~g~~~~~~~~~~ 148 (175)
T 2rb4_A 114 KQGEEPDYETYLHRIGRTGRFGK--KGLAFNMIEVDE 148 (175)
T ss_dssp --CCSCCHHHHHHHHCBC----C--CEEEEEEECGGG
T ss_pred CccccCCHHHHHHHhcccccCCC--CceEEEEEccch
Confidence 55 4445666 6666664 577888887664
No 146
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=23.98 E-value=22 Score=40.04 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=50.5
Q ss_pred chHHHHHhHHHHHHHHHHhhhhh---hhHHHHH--HHHHHHHHhhhcCCCC---------------cCe--eEEecCCcC
Q 001153 823 RKLVMALNGLAGIALIEKNLSQA---VSLYKEA--MAVVEEHSEDFRLDPL---------------LNI--HLHHNLTEI 880 (1137)
Q Consensus 823 rkvLifsq~~a~L~iLe~~l~~a---~~~y~~~--l~~~~~~~~~f~~D~~---------------~~l--h~~~Nl~dw 880 (1137)
.++|||++.....+.+.+.+... +..+.+. ...+++..+.|+.+.. ..+ .+.+++ .|
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~-p~ 355 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL-PN 355 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC-CS
T ss_pred CcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC-CC
Confidence 47788888888887777766543 1112221 2234444455543332 112 333443 58
Q ss_pred Ccchhhhhh-hhhhcCCCCceEEEEcccCC
Q 001153 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1137)
Q Consensus 881 np~~d~QA~-r~~riGQ~~~v~v~rl~~~~ 909 (1137)
++..-.|+. |++|.|++ ..++.+++..
T Consensus 356 s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (410)
T 2j0s_A 356 NRELYIHRIGRSGRYGRK--GVAINFVKND 383 (410)
T ss_dssp SHHHHHHHHTTSSGGGCC--EEEEEEEEGG
T ss_pred CHHHHHHhcccccCCCCc--eEEEEEecHH
Confidence 899999999 99999975 5666667654
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=23.57 E-value=30 Score=35.78 Aligned_cols=39 Identities=18% Similarity=-0.031 Sum_probs=24.3
Q ss_pred eeEEEecccccccC---hhHHHHHHHHHhcc----CeEEEEeccCC
Q 001153 599 WWRICLDEAQMVES---NAAAATEMALRLYA----KHRWCITGTPI 637 (1137)
Q Consensus 599 w~rVILDEAH~IKN---~~S~~~kal~~L~a----~~RwlLTGTPi 637 (1137)
-..||+||||.+-+ ......+.+..+.. ..-++|.|.|.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 34799999999832 22222345555533 23688999983
No 148
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=23.38 E-value=32 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=22.8
Q ss_pred CCCCCCccccCccccceeccCCCcccCCCCC
Q 001153 322 SPLCMPMDFLDTYSTLFYNPFSGSLSLSPDY 352 (1137)
Q Consensus 322 ~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~ 352 (1137)
.+.|.+....+ +..+|||..|++-...++.
T Consensus 5 ~~~W~e~~~~~-G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 5 VSEWTEYKTAD-GKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp SCSCEEEECTT-SCEEEEETTTTEEESSCCS
T ss_pred CCCeEEEECCC-CCEEEEECCCCCEEecCCC
Confidence 35688776555 7899999999988776543
No 149
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.90 E-value=62 Score=26.94 Aligned_cols=37 Identities=27% Similarity=0.643 Sum_probs=27.8
Q ss_pred ccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 429 GLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 429 ~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
|..+.|+.|..+.|..|++.... ....+...|+.|..
T Consensus 19 g~ll~Cd~C~~~fH~~Cl~ppl~----------------------~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 19 GELLCCDTCPSSYHIHCLNPPLP----------------------EIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCBCCSSSCCCBCSSSSSSCCS----------------------SCCSSCCCCTTTTT
T ss_pred CCEEEcCCCCHHHcccccCCCcC----------------------cCCCCccCChhhcC
Confidence 56899999999999999863211 11357889999964
No 150
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=21.69 E-value=73 Score=38.43 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=32.3
Q ss_pred hccccceeEEEecccccccChhHHHHHHHHH-hc--cCeEEEEeccCCCC
Q 001153 593 LLTRIFWWRICLDEAQMVESNAAAATEMALR-LY--AKHRWCITGTPIQR 639 (1137)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~S~~~kal~~-L~--a~~RwlLTGTPiqN 639 (1137)
.+.....+.+|+||+|.+++.. ....++.. +. ...++++++||-..
T Consensus 268 ~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 268 AVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred CccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 3555667899999999998743 44445443 33 34789999999655
No 151
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=21.07 E-value=72 Score=34.72 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=30.6
Q ss_pred ceeEEEeccccccc-Ch-hHHHHHHHHHhccCeEEEEeccCCCCChhhhHh
Q 001153 598 FWWRICLDEAQMVE-SN-AAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1137)
Q Consensus 598 ~w~rVILDEAH~IK-N~-~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~s 646 (1137)
....||+||+|.+. .. .....+.+.......++++|.++...-...|.+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 46789999999995 21 222333333445677889988876643444444
No 152
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=20.66 E-value=29 Score=32.19 Aligned_cols=17 Identities=35% Similarity=1.021 Sum_probs=14.6
Q ss_pred ccccccccccccccccc
Q 001153 427 YKGLWVQCDICDAWQHA 443 (1137)
Q Consensus 427 ~~~~~v~C~~c~~w~h~ 443 (1137)
-...||||+.|..|..-
T Consensus 24 ~~~~WVQCD~C~KWRrL 40 (100)
T 2l7p_A 24 TESAWVRCDDCFKWRRI 40 (100)
T ss_dssp SSSEEEECTTTCCEEEE
T ss_pred CCCeEEeeCCCCccccC
Confidence 45679999999999877
No 153
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.53 E-value=35 Score=28.49 Aligned_cols=37 Identities=24% Similarity=0.600 Sum_probs=28.0
Q ss_pred ccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 001153 429 GLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1137)
Q Consensus 429 ~~~v~C~~c~~w~h~~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1137)
|..+.|+.|..|-|..|++.... ....+...|+.|..
T Consensus 21 g~ll~CD~C~~~fH~~Cl~p~l~----------------------~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 21 GEIILCDTCPRAYHMVCLDPDME----------------------KAPEGKWSCPHCEK 57 (61)
T ss_dssp SSEEECSSSSCEEEHHHHCTTCC----------------------SCCCSSCCCTTGGG
T ss_pred CcEEECCCCChhhhhhccCCCCC----------------------CCCCCceECccccc
Confidence 57899999999999999864211 11457889999964
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=20.25 E-value=96 Score=30.70 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=24.8
Q ss_pred ceeEEEecccccccChh-HHHHHHHHHhccCeEEEEeccCC
Q 001153 598 FWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCITGTPI 637 (1137)
Q Consensus 598 ~w~rVILDEAH~IKN~~-S~~~kal~~L~a~~RwlLTGTPi 637 (1137)
....||+||+|.+.... ....+.+.......++++|+...
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 35689999999986432 22333333445567788876654
Done!