Query 001154
Match_columns 1136
No_of_seqs 814 out of 5597
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.4E-73 8.1E-78 755.0 48.4 214 816-1054 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 3E-67 1E-71 695.0 56.6 214 816-1054 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 2.9E-58 1E-62 562.8 33.2 188 844-1056 371-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 8.1E-58 2.8E-62 554.0 32.4 188 844-1056 301-490 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 1E-56 3.6E-61 542.4 31.5 202 844-1068 283-486 (538)
6 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-55 7.9E-60 549.8 37.9 214 147-395 30-296 (670)
7 2iw3_A Elongation factor 3A; a 100.0 1.2E-55 4.3E-60 554.5 33.8 184 148-396 448-634 (986)
8 3j16_B RLI1P; ribosome recycli 100.0 1.1E-54 3.6E-59 530.1 32.2 201 843-1068 361-568 (608)
9 3pih_A Uvrabc system protein A 100.0 1.3E-41 4.3E-46 428.1 33.5 196 844-1054 599-897 (916)
10 3tui_C Methionine import ATP-b 100.0 5.1E-42 1.7E-46 390.6 26.2 218 816-1054 24-248 (366)
11 3tif_A Uncharacterized ABC tra 100.0 9.8E-42 3.4E-46 370.7 25.6 204 842-1055 18-230 (235)
12 3rlf_A Maltose/maltodextrin im 100.0 8.3E-42 2.8E-46 391.5 25.7 208 836-1055 10-219 (381)
13 3fvq_A Fe(3+) IONS import ATP- 100.0 5.4E-42 1.8E-46 390.5 23.7 208 836-1055 11-224 (359)
14 2olj_A Amino acid ABC transpor 100.0 1.8E-41 6E-46 373.6 25.7 204 839-1054 34-243 (263)
15 2pcj_A ABC transporter, lipopr 100.0 2.3E-41 8E-46 365.2 25.8 202 839-1053 14-222 (224)
16 3tui_C Methionine import ATP-b 100.0 2.4E-41 8.3E-46 385.0 27.1 207 147-396 40-252 (366)
17 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-41 4.4E-46 376.8 23.8 202 842-1055 21-229 (275)
18 1b0u_A Histidine permease; ABC 100.0 1.9E-41 6.4E-46 374.3 24.8 204 839-1054 16-237 (262)
19 1vpl_A ABC transporter, ATP-bi 100.0 3.3E-41 1.1E-45 370.2 24.7 203 840-1054 26-230 (256)
20 2r6f_A Excinuclease ABC subuni 100.0 2.4E-40 8.1E-45 412.3 34.4 195 844-1054 639-937 (972)
21 1g6h_A High-affinity branched- 100.0 3.2E-41 1.1E-45 371.9 22.2 207 839-1054 17-237 (257)
22 1z47_A CYSA, putative ABC-tran 100.0 5.1E-41 1.7E-45 382.9 24.1 203 840-1054 26-230 (355)
23 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-40 3.9E-45 379.6 25.7 207 148-397 17-228 (359)
24 2yyz_A Sugar ABC transporter, 100.0 7.6E-41 2.6E-45 382.5 24.3 205 838-1054 12-218 (359)
25 2it1_A 362AA long hypothetical 100.0 9.4E-41 3.2E-45 382.2 24.7 205 838-1054 12-218 (362)
26 4g1u_C Hemin import ATP-bindin 100.0 6.3E-41 2.2E-45 370.4 22.4 203 839-1055 21-233 (266)
27 1g29_1 MALK, maltose transport 100.0 1.4E-40 4.9E-45 382.9 25.6 205 838-1054 12-224 (372)
28 1ji0_A ABC transporter; ATP bi 100.0 9.6E-41 3.3E-45 364.2 22.7 203 839-1054 16-223 (240)
29 3rlf_A Maltose/maltodextrin im 100.0 2E-40 6.9E-45 379.9 25.1 207 148-397 16-223 (381)
30 1v43_A Sugar-binding transport 100.0 1.5E-40 5E-45 382.0 22.5 204 839-1054 21-226 (372)
31 1oxx_K GLCV, glucose, ABC tran 100.0 8.7E-41 3E-45 382.5 20.4 204 840-1055 14-226 (353)
32 3tif_A Uncharacterized ABC tra 100.0 5.4E-40 1.9E-44 356.9 25.1 208 147-395 17-232 (235)
33 2vf7_A UVRA2, excinuclease ABC 100.0 2.1E-39 7.2E-44 404.8 34.0 106 942-1054 708-822 (842)
34 3gfo_A Cobalt import ATP-bindi 100.0 4.7E-40 1.6E-44 364.3 23.4 206 149-397 22-233 (275)
35 4g1u_C Hemin import ATP-bindin 100.0 1.2E-39 4.2E-44 360.1 26.6 204 148-396 24-236 (266)
36 3d31_A Sulfate/molybdate ABC t 100.0 3E-40 1E-44 376.5 21.1 201 838-1054 10-212 (348)
37 2yyz_A Sugar ABC transporter, 100.0 1.3E-39 4.5E-44 372.3 25.5 206 148-396 16-222 (359)
38 1z47_A CYSA, putative ABC-tran 100.0 1.2E-39 4.1E-44 371.6 25.1 205 149-396 29-234 (355)
39 2d2e_A SUFC protein; ABC-ATPas 100.0 6.8E-40 2.3E-44 359.7 22.0 207 839-1054 13-228 (250)
40 2ygr_A Uvrabc system protein A 100.0 1.3E-38 4.5E-43 398.2 36.1 195 844-1054 657-955 (993)
41 2ihy_A ABC transporter, ATP-bi 100.0 5.7E-40 2E-44 365.0 21.0 218 816-1055 21-248 (279)
42 2onk_A Molybdate/tungstate ABC 100.0 7.6E-40 2.6E-44 356.2 21.5 196 844-1054 14-211 (240)
43 2yz2_A Putative ABC transporte 100.0 6.5E-40 2.2E-44 363.1 21.3 200 842-1054 20-222 (266)
44 2it1_A 362AA long hypothetical 100.0 1.7E-39 5.7E-44 371.9 25.0 206 148-396 16-222 (362)
45 2pcj_A ABC transporter, lipopr 100.0 1.6E-39 5.5E-44 350.8 23.2 200 148-392 17-223 (224)
46 2olj_A Amino acid ABC transpor 100.0 2.9E-39 9.8E-44 356.0 25.5 205 148-396 37-247 (263)
47 1v43_A Sugar-binding transport 100.0 2.6E-39 8.9E-44 371.6 24.7 206 148-396 24-230 (372)
48 1g29_1 MALK, maltose transport 100.0 3.3E-39 1.1E-43 371.6 25.2 206 148-396 16-228 (372)
49 3d31_A Sulfate/molybdate ABC t 100.0 2.3E-39 7.8E-44 369.2 23.4 201 150-396 15-216 (348)
50 1b0u_A Histidine permease; ABC 100.0 1.9E-39 6.6E-44 358.2 21.8 205 148-396 19-241 (262)
51 1vpl_A ABC transporter, ATP-bi 100.0 4.3E-39 1.5E-43 353.4 23.2 206 148-397 28-235 (256)
52 1oxx_K GLCV, glucose, ABC tran 100.0 2.7E-39 9.3E-44 370.1 21.9 204 150-396 20-229 (353)
53 1g6h_A High-affinity branched- 100.0 3.7E-39 1.3E-43 355.4 21.9 216 148-394 20-239 (257)
54 1ji0_A ABC transporter; ATP bi 100.0 6.1E-39 2.1E-43 350.0 23.3 204 148-396 19-227 (240)
55 2zu0_C Probable ATP-dependent 100.0 8.5E-39 2.9E-43 354.1 24.2 219 817-1054 21-249 (267)
56 2nq2_C Hypothetical ABC transp 100.0 1.2E-38 4E-43 349.9 24.8 194 841-1054 17-212 (253)
57 3nh6_A ATP-binding cassette SU 100.0 7.9E-39 2.7E-43 358.8 23.3 208 148-397 67-277 (306)
58 3nh6_A ATP-binding cassette SU 100.0 6E-39 2E-43 359.8 21.5 211 815-1054 52-272 (306)
59 2onk_A Molybdate/tungstate ABC 100.0 8.4E-39 2.9E-43 348.0 21.6 201 150-396 14-215 (240)
60 2qi9_C Vitamin B12 import ATP- 100.0 7.3E-39 2.5E-43 350.2 21.1 194 843-1054 14-217 (249)
61 2ixe_A Antigen peptide transpo 100.0 5.3E-39 1.8E-43 356.2 19.7 202 842-1054 32-240 (271)
62 2ff7_A Alpha-hemolysin translo 100.0 9.6E-39 3.3E-43 349.5 21.3 197 841-1054 21-227 (247)
63 1sgw_A Putative ABC transporte 100.0 1.9E-39 6.5E-44 346.4 14.7 187 839-1042 20-206 (214)
64 2yz2_A Putative ABC transporte 100.0 4.3E-38 1.5E-42 348.5 22.2 205 148-397 20-227 (266)
65 2ff7_A Alpha-hemolysin translo 100.0 1.6E-37 5.4E-42 339.9 23.6 200 148-396 22-231 (247)
66 1mv5_A LMRA, multidrug resista 100.0 1.8E-38 6.2E-43 347.1 15.9 199 841-1054 14-221 (243)
67 2ihy_A ABC transporter, ATP-bi 100.0 8.4E-38 2.9E-42 347.6 20.1 209 148-395 34-250 (279)
68 2ixe_A Antigen peptide transpo 100.0 1.4E-37 4.8E-42 344.8 20.7 209 148-397 32-245 (271)
69 2ghi_A Transport protein; mult 100.0 2.2E-37 7.5E-42 341.4 19.4 195 842-1054 33-237 (260)
70 2d2e_A SUFC protein; ABC-ATPas 100.0 1.8E-37 6.2E-42 340.5 18.3 205 148-394 16-230 (250)
71 2pjz_A Hypothetical protein ST 100.0 2.9E-37 9.7E-42 340.1 19.4 190 842-1054 18-210 (263)
72 2qi9_C Vitamin B12 import ATP- 100.0 4.7E-37 1.6E-41 335.8 20.3 197 149-395 14-220 (249)
73 1mv5_A LMRA, multidrug resista 100.0 3E-37 1E-41 337.4 18.4 202 148-397 15-226 (243)
74 2nq2_C Hypothetical ABC transp 100.0 1.7E-36 6E-41 332.6 24.4 197 148-395 18-215 (253)
75 2zu0_C Probable ATP-dependent 100.0 9.8E-37 3.4E-41 337.5 21.9 223 148-405 33-261 (267)
76 2ghi_A Transport protein; mult 100.0 1.3E-36 4.4E-41 335.2 22.2 200 148-397 33-242 (260)
77 2pjz_A Hypothetical protein ST 100.0 2.2E-36 7.5E-41 333.0 22.0 194 148-396 18-214 (263)
78 2pze_A Cystic fibrosis transme 100.0 2.4E-36 8.1E-41 327.2 19.8 186 841-1054 20-213 (229)
79 3gd7_A Fusion complex of cysti 100.0 4.8E-37 1.7E-41 354.9 14.7 210 816-1054 19-237 (390)
80 3gd7_A Fusion complex of cysti 100.0 1.1E-36 3.9E-41 351.8 17.3 200 148-397 34-242 (390)
81 2cbz_A Multidrug resistance-as 100.0 2.5E-36 8.6E-41 328.5 18.7 186 841-1054 17-212 (237)
82 2pze_A Cystic fibrosis transme 100.0 7.8E-36 2.7E-40 323.1 22.2 196 148-396 21-217 (229)
83 2cbz_A Multidrug resistance-as 100.0 6.8E-36 2.3E-40 325.1 18.7 199 148-397 18-217 (237)
84 4a82_A Cystic fibrosis transme 100.0 7.3E-36 2.5E-40 366.7 20.7 208 148-397 354-564 (578)
85 1sgw_A Putative ABC transporte 100.0 2.8E-36 9.7E-41 321.9 14.4 188 149-386 23-210 (214)
86 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-35 3.9E-40 365.0 20.7 208 148-397 356-566 (587)
87 2yl4_A ATP-binding cassette SU 100.0 4.7E-35 1.6E-39 361.0 25.1 203 148-396 357-569 (595)
88 3b5x_A Lipid A export ATP-bind 100.0 5E-35 1.7E-39 359.9 24.4 202 148-397 356-567 (582)
89 3qf4_A ABC transporter, ATP-bi 100.0 1.1E-35 3.6E-40 365.3 18.4 213 815-1055 340-562 (587)
90 2yl4_A ATP-binding cassette SU 100.0 5.7E-35 2E-39 360.2 24.7 216 817-1056 342-567 (595)
91 4a82_A Cystic fibrosis transme 100.0 2.4E-35 8.3E-40 362.1 21.1 212 815-1054 338-559 (578)
92 3b60_A Lipid A export ATP-bind 100.0 4.6E-35 1.6E-39 360.1 23.4 202 148-397 356-567 (582)
93 3qf4_B Uncharacterized ABC tra 100.0 2E-35 7E-40 363.9 19.3 208 148-397 368-578 (598)
94 3b60_A Lipid A export ATP-bind 100.0 4.8E-35 1.7E-39 359.9 20.9 212 816-1054 341-562 (582)
95 3b5x_A Lipid A export ATP-bind 100.0 3.7E-35 1.3E-39 361.0 18.1 212 816-1054 341-562 (582)
96 3qf4_B Uncharacterized ABC tra 100.0 4.6E-35 1.6E-39 360.8 15.7 210 816-1054 354-573 (598)
97 2bbs_A Cystic fibrosis transme 100.0 3.1E-34 1.1E-38 320.1 18.9 184 842-1054 51-242 (290)
98 4f4c_A Multidrug resistance pr 100.0 1.7E-34 5.9E-39 383.2 18.6 212 146-397 1090-1304(1321)
99 2bbs_A Cystic fibrosis transme 100.0 8.8E-34 3E-38 316.5 18.1 194 149-396 52-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 2.1E-32 7.2E-37 362.4 19.5 212 816-1054 387-608 (1284)
101 3bk7_A ABC transporter ATP-bin 100.0 2.8E-30 9.6E-35 315.8 20.7 191 150-397 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 3.6E-30 1.2E-34 311.9 19.5 191 150-397 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 6.4E-30 2.2E-34 308.7 20.7 192 150-396 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 100.0 2.3E-29 8E-34 306.9 20.8 193 148-397 360-559 (608)
105 1tf7_A KAIC; homohexamer, hexa 100.0 4.2E-31 1.4E-35 321.2 2.4 153 849-1044 275-442 (525)
106 2iw3_A Elongation factor 3A; a 100.0 4.7E-29 1.6E-33 313.9 20.6 183 839-1054 445-630 (986)
107 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-29 6.1E-34 315.7 14.7 205 842-1055 31-294 (670)
108 2r6f_A Excinuclease ABC subuni 99.9 4.5E-25 1.5E-29 275.3 18.1 107 282-396 825-941 (972)
109 3pih_A Uvrabc system protein A 99.9 2.2E-24 7.5E-29 271.8 23.0 109 281-396 784-901 (916)
110 2vf7_A UVRA2, excinuclease ABC 99.9 1.2E-24 4.2E-29 272.0 19.1 108 281-396 709-826 (842)
111 2ygr_A Uvrabc system protein A 99.9 1.9E-24 6.4E-29 270.9 19.4 108 282-397 843-960 (993)
112 4aby_A DNA repair protein RECN 99.9 2.2E-24 7.5E-29 255.1 15.8 203 843-1051 49-380 (415)
113 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.2E-27 1.1E-31 279.6 -9.7 195 847-1067 130-350 (460)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.1E-26 7.2E-31 272.6 -5.2 184 153-396 130-337 (460)
115 4aby_A DNA repair protein RECN 99.9 4E-23 1.4E-27 244.3 14.6 236 148-390 48-381 (415)
116 3b85_A Phosphate starvation-in 99.9 5.1E-26 1.7E-30 241.8 -14.7 144 840-1029 11-159 (208)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6E-22 2.1E-26 229.1 15.7 82 966-1050 277-364 (365)
118 4gp7_A Metallophosphoesterase; 99.9 2.3E-23 8E-28 215.1 2.9 150 847-1038 1-167 (171)
119 1e69_A Chromosome segregation 99.9 8.3E-22 2.8E-26 224.6 14.1 87 966-1055 217-309 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 8.5E-21 2.9E-25 219.5 15.7 84 302-388 275-364 (365)
121 3b85_A Phosphate starvation-in 99.8 3.4E-23 1.2E-27 220.1 -5.0 148 148-371 13-161 (208)
122 2v9p_A Replication protein E1; 99.8 4.6E-23 1.6E-27 230.2 -9.6 158 148-402 113-271 (305)
123 1tq4_A IIGP1, interferon-induc 99.8 4E-23 1.4E-27 240.2 -12.4 171 842-1040 36-248 (413)
124 1znw_A Guanylate kinase, GMP k 99.8 8.2E-24 2.8E-28 225.6 -17.0 185 840-1046 7-205 (207)
125 1tq4_A IIGP1, interferon-induc 99.8 1.5E-22 5.2E-27 235.3 -7.9 172 148-379 36-248 (413)
126 4gp7_A Metallophosphoesterase; 99.8 8E-21 2.7E-25 196.1 5.5 66 306-373 83-164 (171)
127 1ye8_A Protein THEP1, hypothet 99.8 4.7E-21 1.6E-25 198.8 3.7 148 857-1053 2-162 (178)
128 1e69_A Chromosome segregation 99.8 3.4E-20 1.2E-24 211.3 11.0 80 304-387 217-302 (322)
129 1ye8_A Protein THEP1, hypothet 99.8 7.4E-21 2.5E-25 197.3 3.9 149 163-388 2-159 (178)
130 3sop_A Neuronal-specific septi 99.8 7.3E-21 2.5E-25 210.5 -4.2 148 857-1029 4-151 (270)
131 3b9q_A Chloroplast SRP recepto 99.8 2E-20 7E-25 210.1 -2.4 153 846-1027 91-256 (302)
132 3b9q_A Chloroplast SRP recepto 99.8 3.3E-20 1.1E-24 208.3 -1.5 174 151-386 90-284 (302)
133 2v9p_A Replication protein E1; 99.8 1.3E-22 4.5E-27 226.5 -21.2 157 843-1068 114-271 (305)
134 3sop_A Neuronal-specific septi 99.8 6.4E-20 2.2E-24 203.0 0.1 147 163-368 4-150 (270)
135 1z6g_A Guanylate kinase; struc 99.7 2.2E-22 7.7E-27 216.2 -21.3 153 843-1015 11-174 (218)
136 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.2E-19 4.2E-24 206.6 -1.4 130 844-1045 160-290 (330)
137 2og2_A Putative signal recogni 99.7 1.2E-19 4.2E-24 207.3 -1.7 152 847-1027 149-313 (359)
138 1z6g_A Guanylate kinase; struc 99.7 1.5E-21 5.2E-26 209.7 -16.7 156 148-354 10-175 (218)
139 2o5v_A DNA replication and rep 99.7 1.1E-17 3.6E-22 191.7 13.7 86 301-395 259-354 (359)
140 3qkt_A DNA double-strand break 99.7 2.4E-17 8.1E-22 189.1 16.6 76 966-1043 246-327 (339)
141 2og2_A Putative signal recogni 99.7 3.1E-19 1.1E-23 203.9 -0.0 173 152-386 148-341 (359)
142 1znw_A Guanylate kinase, GMP k 99.7 8.3E-21 2.8E-25 202.4 -13.0 184 148-382 9-202 (207)
143 2dpy_A FLII, flagellum-specifi 99.7 1.2E-19 4E-24 213.8 -6.2 186 830-1054 132-339 (438)
144 2o5v_A DNA replication and rep 99.7 2.2E-17 7.6E-22 189.1 12.8 79 968-1055 265-352 (359)
145 3aez_A Pantothenate kinase; tr 99.7 4.9E-19 1.7E-23 199.7 -1.8 128 153-339 81-209 (312)
146 2dpy_A FLII, flagellum-specifi 99.7 2.9E-19 9.8E-24 210.5 -6.2 179 148-395 145-342 (438)
147 1cr0_A DNA primase/helicase; R 99.7 3.4E-18 1.2E-22 192.6 2.3 182 843-1045 23-235 (296)
148 2pt7_A CAG-ALFA; ATPase, prote 99.7 7.2E-18 2.4E-22 192.0 2.4 133 150-386 160-292 (330)
149 3qkt_A DNA double-strand break 99.7 8.7E-16 3E-20 176.1 17.7 77 303-382 245-327 (339)
150 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 3.2E-16 1.1E-20 156.7 11.1 76 966-1043 55-136 (148)
151 2jeo_A Uridine-cytidine kinase 99.6 3.5E-17 1.2E-21 179.0 3.9 177 147-398 11-188 (245)
152 1cr0_A DNA primase/helicase; R 99.6 4.1E-17 1.4E-21 183.6 2.8 186 147-386 21-237 (296)
153 4ad8_A DNA repair protein RECN 99.6 4.7E-16 1.6E-20 188.4 12.1 78 303-384 393-473 (517)
154 2jeo_A Uridine-cytidine kinase 99.6 7.9E-18 2.7E-22 184.1 -3.4 155 840-1027 10-164 (245)
155 2o8b_B DNA mismatch repair pro 99.6 2.9E-17 9.8E-22 211.0 0.9 154 840-1049 767-930 (1022)
156 2ehv_A Hypothetical protein PH 99.6 2.8E-17 9.5E-22 179.8 0.4 161 851-1043 26-206 (251)
157 3aez_A Pantothenate kinase; tr 99.6 2.4E-18 8.3E-23 194.1 -9.3 157 852-1043 87-243 (312)
158 2eyu_A Twitching motility prot 99.6 5.4E-17 1.9E-21 178.6 1.4 131 843-1043 15-146 (261)
159 3thx_A DNA mismatch repair pro 99.6 6E-16 2.1E-20 196.3 9.8 156 841-1053 648-807 (934)
160 2obl_A ESCN; ATPase, hydrolase 99.6 3.4E-17 1.2E-21 187.2 -1.7 186 831-1054 47-250 (347)
161 1tf7_A KAIC; homohexamer, hexa 99.6 1.6E-15 5.3E-20 184.2 11.2 155 155-385 275-444 (525)
162 4a74_A DNA repair and recombin 99.6 1.5E-16 5.1E-21 171.7 0.4 151 851-1045 21-200 (231)
163 3thx_A DNA mismatch repair pro 99.6 1.9E-15 6.7E-20 191.6 10.3 89 305-395 720-811 (934)
164 3thx_B DNA mismatch repair pro 99.6 9.4E-17 3.2E-21 203.0 -2.5 144 841-1038 659-804 (918)
165 2qnr_A Septin-2, protein NEDD5 99.6 2.1E-17 7.2E-22 186.0 -8.2 159 838-1029 7-168 (301)
166 2obl_A ESCN; ATPase, hydrolase 99.6 3.2E-16 1.1E-20 179.1 0.4 180 148-395 59-253 (347)
167 1ewq_A DNA mismatch repair pro 99.5 4.6E-16 1.6E-20 194.1 0.9 129 841-1029 565-699 (765)
168 2o8b_B DNA mismatch repair pro 99.5 1.2E-15 4.1E-20 196.0 3.1 159 148-393 769-938 (1022)
169 3asz_A Uridine kinase; cytidin 99.5 1.8E-16 6.2E-21 169.0 -4.0 144 158-365 3-159 (211)
170 4a74_A DNA repair and recombin 99.5 1.2E-15 4E-20 164.6 2.3 154 156-385 20-201 (231)
171 3asz_A Uridine kinase; cytidin 99.5 2.3E-17 8E-22 175.9 -12.0 145 852-1028 3-161 (211)
172 1rj9_A FTSY, signal recognitio 99.5 5.9E-16 2E-20 173.8 -1.3 146 854-1028 101-258 (304)
173 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 2.9E-14 9.8E-19 142.6 10.3 83 301-386 52-142 (148)
174 2eyu_A Twitching motility prot 99.5 4.5E-15 1.5E-19 163.3 4.6 133 149-383 15-147 (261)
175 1pzn_A RAD51, DNA repair and r 99.5 7.3E-16 2.5E-20 176.9 -2.4 138 849-1029 125-287 (349)
176 2ehv_A Hypothetical protein PH 99.5 2E-15 6.8E-20 165.0 0.9 71 310-382 121-206 (251)
177 2i3b_A HCR-ntpase, human cance 99.5 2.1E-16 7.3E-21 165.1 -6.6 159 161-390 1-169 (189)
178 1wb9_A DNA mismatch repair pro 99.5 3.7E-15 1.3E-19 187.1 2.6 155 841-1051 594-750 (800)
179 1pzn_A RAD51, DNA repair and r 99.5 1.9E-15 6.6E-20 173.4 -0.5 168 149-391 118-309 (349)
180 1w1w_A Structural maintenance 99.5 1.7E-13 5.7E-18 162.4 15.2 75 305-382 332-410 (430)
181 3thx_B DNA mismatch repair pro 99.5 3.5E-14 1.2E-18 179.6 9.3 155 148-388 660-816 (918)
182 1ewq_A DNA mismatch repair pro 99.5 1.7E-14 5.8E-19 180.1 5.7 132 148-375 566-704 (765)
183 1rj9_A FTSY, signal recognitio 99.5 4E-15 1.4E-19 167.0 -0.4 148 160-367 101-257 (304)
184 2qnr_A Septin-2, protein NEDD5 99.5 3E-15 1E-19 168.4 -1.6 155 148-368 11-167 (301)
185 1nlf_A Regulatory protein REPA 99.5 7.3E-14 2.5E-18 155.7 9.4 151 851-1029 26-182 (279)
186 3szr_A Interferon-induced GTP- 99.5 9.7E-16 3.3E-20 188.4 -6.6 166 164-397 48-237 (608)
187 2i3b_A HCR-ntpase, human cance 99.5 4E-16 1.4E-20 163.1 -9.0 158 855-1053 1-170 (189)
188 2w0m_A SSO2452; RECA, SSPF, un 99.4 8.6E-15 2.9E-19 157.9 0.9 165 844-1044 11-191 (235)
189 3jvv_A Twitching mobility prot 99.4 1.9E-14 6.4E-19 164.9 2.6 127 851-1044 119-245 (356)
190 2w0m_A SSO2452; RECA, SSPF, un 99.4 3E-13 1E-17 145.8 10.9 78 306-384 103-192 (235)
191 2qag_C Septin-7; cell cycle, c 99.4 8.7E-15 3E-19 170.8 -3.2 154 839-1029 21-178 (418)
192 3kta_B Chromosome segregation 99.4 7.7E-13 2.6E-17 135.7 10.9 74 967-1043 63-140 (173)
193 3szr_A Interferon-induced GTP- 99.4 3.6E-14 1.2E-18 174.4 1.3 136 858-1029 48-197 (608)
194 1nlf_A Regulatory protein REPA 99.4 5.4E-13 1.8E-17 148.6 10.6 154 157-371 26-184 (279)
195 1wb9_A DNA mismatch repair pro 99.4 1.1E-13 3.7E-18 173.8 4.9 156 148-390 595-751 (800)
196 2qag_B Septin-6, protein NEDD5 99.4 1.5E-14 5E-19 167.9 -2.8 176 839-1027 25-218 (427)
197 1pui_A ENGB, probable GTP-bind 99.4 9.9E-15 3.4E-19 155.0 -5.1 166 844-1020 17-202 (210)
198 4ad8_A DNA repair protein RECN 99.4 8.9E-13 3.1E-17 159.7 10.3 75 967-1044 395-472 (517)
199 1s96_A Guanylate kinase, GMP k 99.3 2.7E-14 9.1E-19 152.9 -3.8 126 851-1029 12-141 (219)
200 1s96_A Guanylate kinase, GMP k 99.3 1.2E-13 4.1E-18 147.8 1.0 149 156-400 11-163 (219)
201 2cvh_A DNA repair and recombin 99.3 1.1E-11 3.8E-16 132.3 14.5 146 851-1045 16-185 (220)
202 3jvv_A Twitching mobility prot 99.3 5.9E-13 2E-17 152.5 4.4 128 157-384 119-246 (356)
203 1lw7_A Transcriptional regulat 99.3 5.5E-15 1.9E-19 171.2 -14.6 164 150-382 157-342 (365)
204 3kta_B Chromosome segregation 99.3 7.4E-12 2.5E-16 128.4 10.2 79 304-386 62-146 (173)
205 2cvh_A DNA repair and recombin 99.3 6E-12 2.1E-16 134.4 9.5 77 307-384 85-185 (220)
206 1zp6_A Hypothetical protein AT 99.3 2.9E-14 1E-18 149.2 -8.8 142 851-1014 5-147 (191)
207 2bdt_A BH3686; alpha-beta prot 99.3 1.1E-14 3.7E-19 152.4 -12.3 169 161-395 2-182 (189)
208 2bdt_A BH3686; alpha-beta prot 99.3 6.6E-15 2.3E-19 154.0 -14.2 166 855-1054 2-179 (189)
209 2ewv_A Twitching motility prot 99.3 4.4E-13 1.5E-17 155.1 -0.5 129 844-1042 127-256 (372)
210 1htw_A HI0065; nucleotide-bind 99.3 3.9E-13 1.3E-17 136.1 -1.2 77 149-232 21-97 (158)
211 1nij_A Hypothetical protein YJ 99.2 2.9E-15 9.8E-20 170.1 -19.0 156 856-1029 5-190 (318)
212 2qag_C Septin-7; cell cycle, c 99.2 1.2E-12 3.9E-17 152.9 1.8 129 148-342 24-158 (418)
213 2f1r_A Molybdopterin-guanine d 99.2 1.3E-13 4.4E-18 141.5 -6.7 112 162-328 3-125 (171)
214 2gza_A Type IV secretion syste 99.2 7.8E-13 2.7E-17 152.5 -1.3 137 844-1045 164-302 (361)
215 1zp6_A Hypothetical protein AT 99.2 2.8E-12 9.6E-17 134.0 2.7 141 157-351 5-146 (191)
216 2gza_A Type IV secretion syste 99.2 3.8E-12 1.3E-16 146.8 3.9 78 150-230 164-245 (361)
217 2bbw_A Adenylate kinase 4, AK4 99.2 3.2E-14 1.1E-18 155.5 -12.9 148 854-1018 26-200 (246)
218 1n0w_A DNA repair protein RAD5 99.2 6.4E-12 2.2E-16 136.4 4.9 151 850-1045 19-209 (243)
219 3auy_A DNA double-strand break 99.2 4.6E-11 1.6E-15 138.5 11.9 77 967-1046 279-362 (371)
220 1lw7_A Transcriptional regulat 99.2 4.1E-14 1.4E-18 163.9 -14.0 160 846-1042 159-341 (365)
221 2qag_B Septin-6, protein NEDD5 99.2 4.7E-12 1.6E-16 146.9 2.1 158 151-351 30-203 (427)
222 1odf_A YGR205W, hypothetical 3 99.2 5E-12 1.7E-16 141.0 2.0 129 159-341 29-169 (290)
223 1pui_A ENGB, probable GTP-bind 99.2 5E-13 1.7E-17 141.7 -6.2 69 282-354 129-198 (210)
224 2rcn_A Probable GTPase ENGC; Y 99.2 6.3E-12 2.2E-16 143.1 2.2 114 854-983 214-328 (358)
225 2yhs_A FTSY, cell division pro 99.1 1.6E-12 5.5E-17 152.5 -3.0 152 846-1026 284-447 (503)
226 2bbw_A Adenylate kinase 4, AK4 99.1 4.3E-13 1.5E-17 146.5 -7.8 157 160-354 26-198 (246)
227 2ewv_A Twitching motility prot 99.1 1.3E-11 4.4E-16 142.8 4.1 131 150-382 127-257 (372)
228 2qm8_A GTPase/ATPase; G protei 99.1 7.2E-14 2.5E-18 159.5 -14.9 166 841-1016 41-260 (337)
229 1htw_A HI0065; nucleotide-bind 99.1 4.2E-13 1.4E-17 135.8 -8.0 81 839-925 17-97 (158)
230 2yhs_A FTSY, cell division pro 99.1 3.4E-12 1.2E-16 149.8 -1.8 81 151-234 283-372 (503)
231 2rcn_A Probable GTPase ENGC; Y 99.1 6.3E-12 2.1E-16 143.1 0.0 121 151-321 206-328 (358)
232 1udx_A The GTP-binding protein 99.1 3E-12 1E-16 149.3 -2.8 168 846-1038 148-318 (416)
233 1w1w_A Structural maintenance 99.1 1E-10 3.6E-15 138.3 10.5 76 967-1044 332-411 (430)
234 2kjq_A DNAA-related protein; s 99.1 4.1E-11 1.4E-15 120.2 5.3 44 984-1028 81-125 (149)
235 3e70_C DPA, signal recognition 99.1 5.5E-12 1.9E-16 142.8 -1.4 142 853-1027 127-278 (328)
236 1n0w_A DNA repair protein RAD5 99.1 6.1E-11 2.1E-15 128.6 6.8 29 156-184 19-47 (243)
237 2f1r_A Molybdopterin-guanine d 99.1 8.1E-13 2.8E-17 135.5 -9.1 139 856-1019 3-164 (171)
238 2qm8_A GTPase/ATPase; G protei 99.0 2.4E-12 8.3E-17 146.9 -7.2 181 149-353 43-259 (337)
239 3e70_C DPA, signal recognition 99.0 1.6E-11 5.4E-16 139.1 -1.1 73 158-233 126-207 (328)
240 3ec2_A DNA replication protein 99.0 1E-10 3.5E-15 121.0 4.6 47 983-1029 97-144 (180)
241 1nij_A Hypothetical protein YJ 99.0 2.2E-13 7.5E-18 154.5 -17.3 167 161-375 4-196 (318)
242 1p9r_A General secretion pathw 99.0 1.4E-11 4.7E-16 143.9 -3.5 137 148-329 156-314 (418)
243 2oap_1 GSPE-2, type II secreti 99.0 2.6E-12 8.9E-17 154.0 -10.1 85 148-235 247-331 (511)
244 3auy_A DNA double-strand break 99.0 6.6E-10 2.3E-14 128.7 10.5 98 281-382 244-359 (371)
245 3lda_A DNA repair protein RAD5 99.0 2.1E-10 7.2E-15 133.1 5.9 148 850-1045 173-363 (400)
246 2yv5_A YJEQ protein; hydrolase 99.0 7.4E-11 2.5E-15 132.6 1.4 124 158-319 162-300 (302)
247 1udx_A The GTP-binding protein 99.0 1.4E-11 4.8E-16 143.6 -4.8 170 151-378 147-319 (416)
248 3ec2_A DNA replication protein 99.0 9.5E-11 3.2E-15 121.3 1.9 48 322-370 98-146 (180)
249 1odf_A YGR205W, hypothetical 3 99.0 2.3E-11 7.8E-16 135.7 -3.2 127 853-1002 29-168 (290)
250 1p9r_A General secretion pathw 99.0 7.5E-13 2.6E-17 154.6 -15.9 147 831-991 145-314 (418)
251 2yv5_A YJEQ protein; hydrolase 98.9 5.3E-11 1.8E-15 133.8 -3.4 119 853-982 163-301 (302)
252 2oap_1 GSPE-2, type II secreti 98.9 1.5E-12 5.2E-17 156.0 -17.0 178 842-1036 247-457 (511)
253 1sxj_E Activator 1 40 kDa subu 98.9 7.9E-10 2.7E-14 127.1 6.1 134 858-1029 39-175 (354)
254 3c8u_A Fructokinase; YP_612366 98.9 4.6E-11 1.6E-15 126.9 -4.9 121 158-334 19-140 (208)
255 2x8a_A Nuclear valosin-contain 98.9 1E-11 3.4E-16 137.8 -10.5 141 149-349 34-190 (274)
256 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.5E-11 5.1E-16 142.0 -10.8 171 157-393 16-209 (392)
257 2kjq_A DNAA-related protein; s 98.8 6.6E-09 2.3E-13 104.0 8.9 33 150-187 30-62 (149)
258 1lvg_A Guanylate kinase, GMP k 98.8 1.3E-12 4.4E-17 137.8 -19.6 57 317-383 116-173 (198)
259 3c8u_A Fructokinase; YP_612366 98.8 3.1E-11 1E-15 128.2 -9.3 43 853-895 20-63 (208)
260 3lda_A DNA repair protein RAD5 98.8 1.8E-08 6.3E-13 116.9 12.4 62 323-385 272-364 (400)
261 1in4_A RUVB, holliday junction 98.8 7E-11 2.4E-15 135.0 -8.9 154 149-356 32-196 (334)
262 1sq5_A Pantothenate kinase; P- 98.8 2.6E-10 8.7E-15 128.7 -4.3 73 159-236 78-155 (308)
263 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 7.3E-12 2.5E-16 144.6 -17.9 169 852-1055 17-209 (392)
264 1u0l_A Probable GTPase ENGC; p 98.7 1.3E-09 4.4E-14 122.5 0.6 73 157-233 165-259 (301)
265 1sxj_E Activator 1 40 kDa subu 98.7 6.8E-09 2.3E-13 119.2 6.7 135 164-369 39-175 (354)
266 1lvg_A Guanylate kinase, GMP k 98.7 3.5E-12 1.2E-16 134.5 -20.3 56 979-1043 116-172 (198)
267 1t9h_A YLOQ, probable GTPase E 98.7 3E-09 1E-13 118.8 0.8 72 156-231 168-248 (307)
268 1in4_A RUVB, holliday junction 98.7 8.6E-11 3E-15 134.2 -12.0 152 840-1016 29-194 (334)
269 1t9h_A YLOQ, probable GTPase E 98.6 2.2E-09 7.6E-14 119.9 -1.3 115 853-975 171-302 (307)
270 2x8a_A Nuclear valosin-contain 98.6 1.3E-11 4.3E-16 136.9 -20.2 142 842-1011 33-190 (274)
271 1sq5_A Pantothenate kinase; P- 98.6 3.9E-10 1.3E-14 127.2 -8.6 76 853-930 78-156 (308)
272 2dr3_A UPF0273 protein PH0284; 98.6 8.7E-09 3E-13 111.7 1.9 68 977-1044 117-196 (247)
273 3euj_A Chromosome partition pr 98.6 1.6E-08 5.5E-13 119.3 4.0 53 148-204 17-69 (483)
274 2r6a_A DNAB helicase, replicat 98.6 4.7E-08 1.6E-12 116.3 8.0 177 844-1045 192-399 (454)
275 1vma_A Cell division protein F 98.6 4.4E-08 1.5E-12 109.8 7.2 114 154-354 97-213 (306)
276 1u0l_A Probable GTPase ENGC; p 98.6 1.4E-08 4.8E-13 114.0 2.8 98 853-959 167-287 (301)
277 1vma_A Cell division protein F 98.5 1.8E-08 6.2E-13 112.9 2.4 111 849-1014 98-211 (306)
278 2px0_A Flagellar biosynthesis 98.5 1.5E-07 5.2E-12 105.1 9.7 143 159-389 103-247 (296)
279 2dr3_A UPF0273 protein PH0284; 98.5 3.3E-07 1.1E-11 99.2 12.2 60 323-383 127-196 (247)
280 1ls1_A Signal recognition part 98.5 1.5E-07 5.2E-12 105.1 9.5 128 846-1025 91-219 (295)
281 3k1j_A LON protease, ATP-depen 98.5 8E-09 2.7E-13 127.4 -1.2 158 149-351 48-227 (604)
282 2zr9_A Protein RECA, recombina 98.5 2.2E-07 7.4E-12 106.2 10.7 78 975-1053 126-237 (349)
283 3tr0_A Guanylate kinase, GMP k 98.5 1E-08 3.5E-13 108.0 -1.4 71 155-232 1-74 (205)
284 2r6a_A DNAB helicase, replicat 98.5 3.1E-07 1.1E-11 109.1 10.7 183 147-386 189-401 (454)
285 1oix_A RAS-related protein RAB 98.5 2.5E-08 8.4E-13 104.1 0.5 38 975-1014 152-189 (191)
286 2px0_A Flagellar biosynthesis 98.4 1.9E-07 6.6E-12 104.2 7.5 140 853-1050 103-246 (296)
287 1ls1_A Signal recognition part 98.4 1.3E-06 4.3E-11 97.6 13.7 118 152-352 91-209 (295)
288 2ius_A DNA translocase FTSK; n 98.4 3.1E-09 1E-13 126.3 -8.0 166 847-1029 159-343 (512)
289 1iy2_A ATP-dependent metallopr 98.4 7.3E-11 2.5E-15 131.2 -21.6 126 840-989 60-190 (278)
290 1ixz_A ATP-dependent metallopr 98.4 9.2E-11 3.2E-15 128.5 -21.2 130 841-996 37-171 (254)
291 3euj_A Chromosome partition pr 98.4 3.3E-08 1.1E-12 116.7 -1.1 52 842-896 17-68 (483)
292 1iy2_A ATP-dependent metallopr 98.4 1.4E-09 4.9E-14 120.8 -12.4 76 149-231 63-142 (278)
293 1oix_A RAS-related protein RAB 98.4 7E-08 2.4E-12 100.6 1.1 43 307-351 146-188 (191)
294 3tr0_A Guanylate kinase, GMP k 98.3 1.6E-08 5.5E-13 106.5 -4.0 68 849-922 1-71 (205)
295 3k1j_A LON protease, ATP-depen 98.3 5.9E-09 2E-13 128.5 -9.0 162 839-1013 44-227 (604)
296 1ixz_A ATP-dependent metallopr 98.3 2E-09 7E-14 117.7 -12.0 75 149-230 39-117 (254)
297 3hr8_A Protein RECA; alpha and 98.3 4.9E-07 1.7E-11 103.0 6.4 32 156-187 56-87 (356)
298 2zr9_A Protein RECA, recombina 98.3 1.1E-06 3.9E-11 100.3 8.4 30 156-185 56-85 (349)
299 2f9l_A RAB11B, member RAS onco 98.2 5.6E-07 1.9E-11 94.2 4.3 37 977-1015 130-166 (199)
300 1qhl_A Protein (cell division 98.2 6.9E-08 2.4E-12 103.2 -2.9 59 155-217 22-91 (227)
301 2ius_A DNA translocase FTSK; n 98.2 3E-07 1E-11 109.3 2.1 167 153-369 159-343 (512)
302 3lnc_A Guanylate kinase, GMP k 98.2 3.8E-07 1.3E-11 98.1 2.3 40 148-187 14-54 (231)
303 3lnc_A Guanylate kinase, GMP k 98.1 4E-07 1.4E-11 97.9 1.1 38 843-880 15-53 (231)
304 3hr8_A Protein RECA; alpha and 98.0 9.1E-07 3.1E-11 100.8 1.7 28 851-878 57-84 (356)
305 2qtf_A Protein HFLX, GTP-bindi 98.0 1.9E-06 6.6E-11 99.0 4.3 158 160-354 177-353 (364)
306 1qhl_A Protein (cell division 98.0 1.1E-07 3.7E-12 101.7 -5.9 59 849-910 22-91 (227)
307 4eun_A Thermoresistant glucoki 98.0 2.4E-07 8.4E-12 97.3 -3.1 70 156-232 24-95 (200)
308 2ce7_A Cell division protein F 98.0 3.8E-06 1.3E-10 99.5 6.3 61 309-369 93-165 (476)
309 2ce7_A Cell division protein F 98.0 2.9E-06 9.9E-11 100.5 5.0 59 971-1029 93-165 (476)
310 4eun_A Thermoresistant glucoki 98.0 2.5E-07 8.6E-12 97.2 -3.7 55 850-910 24-80 (200)
311 2qtf_A Protein HFLX, GTP-bindi 98.0 3.9E-06 1.3E-10 96.4 5.3 148 857-1016 181-353 (364)
312 3kta_A Chromosome segregation 97.9 4.6E-06 1.6E-10 85.8 4.6 36 152-188 18-53 (182)
313 2f9l_A RAB11B, member RAS onco 97.9 7.5E-06 2.6E-10 85.5 5.7 39 313-353 128-166 (199)
314 4a1f_A DNAB helicase, replicat 97.9 8.9E-06 3E-10 91.9 6.4 139 147-383 32-170 (338)
315 2xau_A PRE-mRNA-splicing facto 97.9 5.4E-06 1.8E-10 104.6 3.7 71 968-1039 190-262 (773)
316 2j41_A Guanylate kinase; GMP, 97.8 5.4E-06 1.8E-10 87.0 2.7 31 157-187 2-32 (207)
317 2e87_A Hypothetical protein PH 97.8 3.8E-05 1.3E-09 88.1 9.7 60 967-1028 230-292 (357)
318 1zu4_A FTSY; GTPase, signal re 97.8 3.5E-06 1.2E-10 94.9 1.0 81 150-233 94-187 (320)
319 3vaa_A Shikimate kinase, SK; s 97.8 9.1E-06 3.1E-10 85.1 3.8 41 146-186 10-50 (199)
320 2dhr_A FTSH; AAA+ protein, hex 97.8 6.2E-07 2.1E-11 106.9 -6.5 49 149-204 54-102 (499)
321 3a00_A Guanylate kinase, GMP k 97.8 7.4E-06 2.5E-10 84.8 2.4 27 161-187 1-27 (186)
322 4a1f_A DNAB helicase, replicat 97.7 1E-05 3.6E-10 91.4 2.8 125 847-1026 38-164 (338)
323 2xau_A PRE-mRNA-splicing facto 97.7 2.8E-05 9.5E-10 98.1 6.4 73 305-378 189-262 (773)
324 3uie_A Adenylyl-sulfate kinase 97.7 3.3E-06 1.1E-10 88.6 -2.1 52 148-203 12-65 (200)
325 2j41_A Guanylate kinase; GMP, 97.6 1.3E-05 4.5E-10 84.0 2.1 30 851-880 2-31 (207)
326 4e22_A Cytidylate kinase; P-lo 97.6 4.6E-06 1.6E-10 91.0 -1.8 66 150-218 19-96 (252)
327 3nwj_A ATSK2; P loop, shikimat 97.6 6.6E-06 2.3E-10 89.3 -1.0 40 148-187 32-74 (250)
328 2dy1_A Elongation factor G; tr 97.6 1.6E-05 5.5E-10 98.6 1.9 132 850-1030 4-138 (665)
329 2dhr_A FTSH; AAA+ protein, hex 97.6 9.3E-08 3.2E-12 113.9 -17.8 76 843-924 54-133 (499)
330 4e22_A Cytidylate kinase; P-lo 97.5 7.1E-06 2.4E-10 89.5 -1.7 57 853-911 25-96 (252)
331 1kgd_A CASK, peripheral plasma 97.5 3.9E-05 1.3E-09 78.9 3.8 37 159-197 3-39 (180)
332 3nwj_A ATSK2; P loop, shikimat 97.5 3E-06 1E-10 92.1 -4.9 38 841-878 31-71 (250)
333 1svm_A Large T antigen; AAA+ f 97.5 1.7E-05 6E-10 91.1 0.9 44 148-197 156-199 (377)
334 3vaa_A Shikimate kinase, SK; s 97.5 2.6E-05 9E-10 81.5 2.1 38 841-878 11-48 (199)
335 3kta_A Chromosome segregation 97.5 3.3E-05 1.1E-09 79.4 2.4 33 846-879 18-50 (182)
336 1jjv_A Dephospho-COA kinase; P 97.5 1.6E-05 5.4E-10 83.6 -0.3 70 970-1043 61-131 (206)
337 1fnn_A CDC6P, cell division co 97.5 0.0004 1.4E-08 80.0 11.6 44 985-1029 124-170 (389)
338 2vp4_A Deoxynucleoside kinase; 97.5 2.5E-05 8.4E-10 83.9 1.1 42 154-202 13-54 (230)
339 3bh0_A DNAB-like replicative h 97.4 0.00015 5.3E-09 81.5 7.6 38 148-185 55-92 (315)
340 1zu4_A FTSY; GTPase, signal re 97.4 1.3E-05 4.5E-10 90.3 -1.6 49 845-895 95-143 (320)
341 2vp4_A Deoxynucleoside kinase; 97.4 3.8E-05 1.3E-09 82.4 1.8 37 853-895 18-54 (230)
342 1ega_A Protein (GTP-binding pr 97.4 6.4E-05 2.2E-09 84.1 3.7 153 853-1040 7-170 (301)
343 3a00_A Guanylate kinase, GMP k 97.4 3.5E-05 1.2E-09 79.7 1.4 26 855-880 1-26 (186)
344 3tqc_A Pantothenate kinase; bi 97.4 4.2E-05 1.4E-09 85.9 1.9 57 149-222 74-136 (321)
345 1knq_A Gluconate kinase; ALFA/ 97.4 7.3E-05 2.5E-09 76.2 3.5 35 159-200 6-40 (175)
346 1jjv_A Dephospho-COA kinase; P 97.4 5.8E-05 2E-09 79.2 2.6 70 307-382 60-131 (206)
347 3tau_A Guanylate kinase, GMP k 97.4 8.4E-05 2.9E-09 78.3 3.8 29 159-187 6-34 (208)
348 1kgd_A CASK, peripheral plasma 97.4 5.3E-05 1.8E-09 77.9 2.1 36 854-890 4-39 (180)
349 1v5w_A DMC1, meiotic recombina 97.4 0.00044 1.5E-08 78.7 10.0 28 850-877 117-144 (343)
350 3t34_A Dynamin-related protein 97.4 0.00018 6.2E-09 82.6 6.8 57 969-1026 155-212 (360)
351 1rz3_A Hypothetical protein rb 97.3 6.5E-05 2.2E-09 78.7 2.4 40 158-200 19-58 (201)
352 2qt1_A Nicotinamide riboside k 97.3 0.00013 4.3E-09 76.7 4.5 45 156-223 16-60 (207)
353 2z43_A DNA repair and recombin 97.3 0.00048 1.6E-08 77.8 9.4 55 973-1027 187-257 (324)
354 3ney_A 55 kDa erythrocyte memb 97.3 0.0001 3.5E-09 76.7 3.5 29 158-186 16-44 (197)
355 3b9p_A CG5977-PA, isoform A; A 97.2 0.0024 8.1E-08 70.8 14.2 27 159-185 52-78 (297)
356 3b9p_A CG5977-PA, isoform A; A 97.2 0.00099 3.4E-08 74.0 11.0 72 970-1041 97-185 (297)
357 2e87_A Hypothetical protein PH 97.2 0.0003 1E-08 80.7 6.7 56 306-364 231-287 (357)
358 3bh0_A DNAB-like replicative h 97.2 0.00019 6.6E-09 80.7 4.5 129 845-1026 58-189 (315)
359 3uie_A Adenylyl-sulfate kinase 97.1 0.00011 3.8E-09 76.8 1.9 46 847-895 17-64 (200)
360 1kag_A SKI, shikimate kinase I 97.1 0.0002 6.7E-09 72.7 3.5 27 160-186 3-29 (173)
361 3cr8_A Sulfate adenylyltranfer 97.1 0.00012 4.2E-09 88.1 2.2 42 157-201 365-408 (552)
362 1v5w_A DMC1, meiotic recombina 97.1 0.0022 7.4E-08 73.0 12.4 35 150-184 110-145 (343)
363 2z43_A DNA repair and recombin 97.1 0.0024 8.1E-08 72.1 12.6 36 150-185 95-131 (324)
364 3tau_A Guanylate kinase, GMP k 97.1 0.00014 4.8E-09 76.6 2.3 28 853-880 6-33 (208)
365 2z4s_A Chromosomal replication 97.1 0.00028 9.6E-09 83.2 4.7 47 323-370 193-240 (440)
366 2dy1_A Elongation factor G; tr 97.1 0.0001 3.5E-09 91.5 0.7 46 155-202 3-48 (665)
367 1fnn_A CDC6P, cell division co 97.1 0.0036 1.2E-07 72.0 13.7 25 163-187 46-70 (389)
368 1ega_A Protein (GTP-binding pr 97.0 0.00089 3.1E-08 74.7 8.1 65 307-378 101-169 (301)
369 3t34_A Dynamin-related protein 97.0 0.00069 2.4E-08 77.7 7.4 34 148-184 24-57 (360)
370 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00033 1.1E-08 69.6 3.7 31 154-185 17-47 (149)
371 1svm_A Large T antigen; AAA+ f 97.0 5.9E-05 2E-09 86.7 -2.4 142 843-997 157-312 (377)
372 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00027 9.4E-09 70.2 2.2 28 848-876 17-44 (149)
373 2qt1_A Nicotinamide riboside k 96.9 0.0003 1E-08 73.8 2.3 29 851-879 17-45 (207)
374 2z4s_A Chromosomal replication 96.9 0.00047 1.6E-08 81.3 4.3 70 985-1055 193-264 (440)
375 3ney_A 55 kDa erythrocyte memb 96.9 0.00031 1.1E-08 73.1 2.2 27 853-879 17-43 (197)
376 4fcw_A Chaperone protein CLPB; 96.8 0.0042 1.4E-07 69.2 11.5 28 160-187 46-73 (311)
377 1rz3_A Hypothetical protein rb 96.8 0.00016 5.5E-09 75.7 -0.6 39 853-893 20-58 (201)
378 2qby_A CDC6 homolog 1, cell di 96.8 0.00026 8.7E-09 81.4 0.9 26 853-878 43-68 (386)
379 4eaq_A DTMP kinase, thymidylat 96.8 0.00064 2.2E-08 72.7 3.9 37 150-186 12-51 (229)
380 2p67_A LAO/AO transport system 96.8 0.00022 7.5E-09 81.2 0.1 46 149-197 44-89 (341)
381 3kl4_A SRP54, signal recogniti 96.8 0.0015 5.1E-08 76.2 7.1 25 854-878 96-120 (433)
382 1knq_A Gluconate kinase; ALFA/ 96.8 0.00042 1.4E-08 70.5 2.1 36 853-894 6-41 (175)
383 2www_A Methylmalonic aciduria 96.7 0.00048 1.7E-08 78.6 2.7 39 159-200 72-110 (349)
384 1cke_A CK, MSSA, protein (cyti 96.7 0.00025 8.5E-09 75.4 0.2 37 161-197 5-41 (227)
385 2q6t_A DNAB replication FORK h 96.7 0.011 3.9E-07 69.5 13.9 38 148-185 187-224 (444)
386 3kl4_A SRP54, signal recogniti 96.7 0.0028 9.4E-08 73.9 8.4 28 160-187 96-123 (433)
387 3m6a_A ATP-dependent protease 96.7 0.00047 1.6E-08 83.5 1.8 46 150-199 98-143 (543)
388 1kag_A SKI, shikimate kinase I 96.6 0.00047 1.6E-08 69.8 1.5 26 854-879 3-28 (173)
389 3tqc_A Pantothenate kinase; bi 96.6 5E-05 1.7E-09 85.3 -6.5 36 844-879 75-116 (321)
390 1ypw_A Transitional endoplasmi 96.6 0.00093 3.2E-08 84.7 4.3 30 851-880 234-263 (806)
391 1m7g_A Adenylylsulfate kinase; 96.5 0.00066 2.3E-08 71.5 1.9 40 158-200 22-63 (211)
392 3cf0_A Transitional endoplasmi 96.5 0.0015 5E-08 72.9 4.7 28 852-879 46-73 (301)
393 3cr8_A Sulfate adenylyltranfer 96.5 0.00025 8.5E-09 85.5 -1.8 41 852-894 366-408 (552)
394 2pez_A Bifunctional 3'-phospho 96.5 0.0013 4.5E-08 67.1 3.9 28 159-186 3-30 (179)
395 2gj8_A MNME, tRNA modification 96.5 0.0018 6.3E-08 65.5 4.8 27 853-879 2-28 (172)
396 2qby_A CDC6 homolog 1, cell di 96.4 0.0014 4.8E-08 75.2 3.8 28 159-186 43-70 (386)
397 2gj8_A MNME, tRNA modification 96.4 0.0024 8.3E-08 64.6 5.1 27 159-185 2-28 (172)
398 3qks_A DNA double-strand break 96.4 0.0016 5.5E-08 68.2 3.7 31 154-185 17-47 (203)
399 1mky_A Probable GTP-binding pr 96.4 0.0026 8.8E-08 75.0 5.8 71 162-232 181-263 (439)
400 2qor_A Guanylate kinase; phosp 96.4 0.0014 4.9E-08 68.4 3.2 29 158-186 9-37 (204)
401 1np6_A Molybdopterin-guanine d 96.3 0.0022 7.4E-08 65.4 4.2 40 162-201 7-46 (174)
402 1y63_A LMAJ004144AAA protein; 96.3 0.0017 5.7E-08 66.8 3.2 32 153-184 2-33 (184)
403 3qks_A DNA double-strand break 96.3 0.0013 4.3E-08 69.0 2.2 28 848-876 17-44 (203)
404 2q6t_A DNAB replication FORK h 96.3 0.0017 5.9E-08 76.5 3.6 57 968-1026 292-361 (444)
405 3lxx_A GTPase IMAP family memb 96.3 0.018 6.1E-07 61.6 11.3 42 985-1026 111-154 (239)
406 3llm_A ATP-dependent RNA helic 96.2 0.0016 5.4E-08 69.8 2.7 66 309-377 163-229 (235)
407 1m2o_B GTP-binding protein SAR 96.2 0.0027 9.2E-08 65.4 4.4 35 843-878 12-46 (190)
408 3llm_A ATP-dependent RNA helic 96.2 0.00058 2E-08 73.3 -0.8 24 853-876 74-97 (235)
409 2ffh_A Protein (FFH); SRP54, s 96.2 0.0033 1.1E-07 73.1 5.6 44 152-200 91-134 (425)
410 1m2o_B GTP-binding protein SAR 96.2 0.0029 9.8E-08 65.2 4.4 35 149-184 12-46 (190)
411 1u94_A RECA protein, recombina 96.2 0.054 1.8E-06 61.6 15.4 30 156-185 58-87 (356)
412 3lxx_A GTPase IMAP family memb 96.2 0.028 9.4E-07 60.1 12.3 24 163-186 31-54 (239)
413 2yvu_A Probable adenylyl-sulfa 96.2 0.002 6.8E-08 66.2 3.1 30 158-187 10-39 (186)
414 2i1q_A DNA repair and recombin 96.2 0.012 4.1E-07 66.1 9.5 28 850-877 93-120 (322)
415 2ga8_A Hypothetical 39.9 kDa p 96.1 0.00082 2.8E-08 75.8 -0.2 37 150-186 11-49 (359)
416 3h4m_A Proteasome-activating n 96.1 0.015 5.2E-07 63.8 10.1 28 158-185 48-75 (285)
417 1j8m_F SRP54, signal recogniti 96.1 0.0039 1.3E-07 69.2 4.8 44 152-199 89-133 (297)
418 1l8q_A Chromosomal replication 96.0 0.011 3.7E-07 66.5 8.4 27 160-186 36-62 (324)
419 2p67_A LAO/AO transport system 96.0 0.00025 8.7E-09 80.7 -5.2 38 842-879 43-80 (341)
420 4eaq_A DTMP kinase, thymidylat 96.0 0.0019 6.6E-08 68.9 2.0 36 845-880 13-51 (229)
421 1mky_A Probable GTP-binding pr 96.0 0.0038 1.3E-07 73.5 4.6 68 857-924 182-262 (439)
422 3ice_A Transcription terminati 96.0 0.0009 3.1E-08 75.8 -0.8 32 847-878 166-197 (422)
423 2p5t_B PEZT; postsegregational 96.0 0.002 7E-08 69.8 2.0 39 157-200 28-66 (253)
424 2www_A Methylmalonic aciduria 95.9 0.0011 3.7E-08 75.7 -0.4 39 853-893 72-110 (349)
425 3h4m_A Proteasome-activating n 95.9 0.0074 2.5E-07 66.3 6.2 27 853-879 49-75 (285)
426 2pez_A Bifunctional 3'-phospho 95.9 0.0025 8.4E-08 65.0 2.1 27 853-879 3-29 (179)
427 1f6b_A SAR1; gtpases, N-termin 95.9 0.0014 4.9E-08 68.0 0.4 34 149-183 14-47 (198)
428 2qag_A Septin-2, protein NEDD5 95.9 0.00037 1.3E-08 79.9 -4.6 33 841-879 29-61 (361)
429 1u94_A RECA protein, recombina 95.9 0.014 4.6E-07 66.6 8.4 27 851-877 59-85 (356)
430 3t61_A Gluconokinase; PSI-biol 95.9 0.0036 1.2E-07 65.2 3.2 25 161-185 18-42 (202)
431 3cm0_A Adenylate kinase; ATP-b 95.9 0.0041 1.4E-07 63.6 3.6 27 159-185 2-28 (186)
432 1cke_A CK, MSSA, protein (cyti 95.9 0.0026 8.8E-08 67.4 2.1 57 855-911 5-74 (227)
433 1l8q_A Chromosomal replication 95.8 0.0068 2.3E-07 68.1 5.5 45 984-1028 96-141 (324)
434 2ohf_A Protein OLA1, GTP-bindi 95.8 0.0041 1.4E-07 71.4 3.6 31 154-184 15-45 (396)
435 3kb2_A SPBC2 prophage-derived 95.8 0.0046 1.6E-07 62.1 3.4 24 163-186 3-26 (173)
436 2qor_A Guanylate kinase; phosp 95.8 0.0028 9.7E-08 66.2 1.9 27 853-879 10-36 (204)
437 1qhx_A CPT, protein (chloramph 95.7 0.0053 1.8E-07 62.2 3.7 26 161-186 3-28 (178)
438 2if2_A Dephospho-COA kinase; a 95.7 0.0044 1.5E-07 64.5 3.1 21 163-183 3-23 (204)
439 3m6a_A ATP-dependent protease 95.7 0.0013 4.5E-08 79.5 -1.1 49 843-894 97-145 (543)
440 3ice_A Transcription terminati 95.7 0.0033 1.1E-07 71.2 2.1 33 153-185 166-198 (422)
441 1y63_A LMAJ004144AAA protein; 95.6 0.0033 1.1E-07 64.6 1.7 32 847-878 2-33 (184)
442 1lv7_A FTSH; alpha/beta domain 95.6 0.0045 1.5E-07 67.0 2.8 35 150-186 36-70 (257)
443 2wji_A Ferrous iron transport 95.6 0.0084 2.9E-07 60.0 4.5 23 857-879 5-27 (165)
444 3bgw_A DNAB-like replicative h 95.6 0.0091 3.1E-07 70.2 5.4 33 845-877 187-219 (444)
445 2b8t_A Thymidine kinase; deoxy 95.5 0.057 2E-06 57.1 10.9 54 323-382 88-150 (223)
446 2qag_A Septin-2, protein NEDD5 95.5 0.00098 3.3E-08 76.4 -3.0 30 149-184 31-60 (361)
447 3r20_A Cytidylate kinase; stru 95.5 0.0065 2.2E-07 64.8 3.6 25 162-186 10-34 (233)
448 1sxj_C Activator 1 40 kDa subu 95.5 0.002 7E-08 73.0 -0.4 39 149-187 32-72 (340)
449 1q3t_A Cytidylate kinase; nucl 95.5 0.0069 2.3E-07 64.8 3.7 29 158-186 13-41 (236)
450 3d8b_A Fidgetin-like protein 1 95.5 0.039 1.3E-06 62.9 10.1 25 854-878 116-140 (357)
451 3d8b_A Fidgetin-like protein 1 95.5 0.099 3.4E-06 59.5 13.5 27 159-185 115-141 (357)
452 2b8t_A Thymidine kinase; deoxy 95.5 0.015 5E-07 61.7 6.0 53 986-1043 89-150 (223)
453 2wjg_A FEOB, ferrous iron tran 95.4 0.01 3.6E-07 60.3 4.7 22 857-878 9-30 (188)
454 2if2_A Dephospho-COA kinase; a 95.4 0.0045 1.5E-07 64.5 1.9 21 857-877 3-23 (204)
455 1f6b_A SAR1; gtpases, N-termin 95.4 0.0019 6.6E-08 67.0 -0.9 34 844-878 15-48 (198)
456 2rhm_A Putative kinase; P-loop 95.4 0.0072 2.4E-07 62.0 3.4 27 159-185 3-29 (193)
457 2v1u_A Cell division control p 95.4 0.015 5.3E-07 66.4 6.4 25 854-878 43-67 (387)
458 2ze6_A Isopentenyl transferase 95.3 0.0083 2.8E-07 65.0 3.7 25 162-186 2-26 (253)
459 2wji_A Ferrous iron transport 95.3 0.0074 2.5E-07 60.3 3.1 23 163-185 5-27 (165)
460 3cf0_A Transitional endoplasmi 95.2 0.0099 3.4E-07 66.1 4.1 30 157-186 45-74 (301)
461 1gvn_B Zeta; postsegregational 95.2 0.011 3.8E-07 65.3 4.4 27 159-185 31-57 (287)
462 2qp9_X Vacuolar protein sortin 95.2 0.06 2E-06 61.3 10.6 27 159-185 82-108 (355)
463 1kht_A Adenylate kinase; phosp 95.2 0.0094 3.2E-07 61.0 3.5 26 161-186 3-28 (192)
464 3trf_A Shikimate kinase, SK; a 95.2 0.01 3.4E-07 60.6 3.6 27 160-186 4-30 (185)
465 1m7g_A Adenylylsulfate kinase; 95.1 0.0033 1.1E-07 66.0 -0.3 38 853-892 23-62 (211)
466 2plr_A DTMP kinase, probable t 95.1 0.012 4.1E-07 61.2 4.0 28 160-187 3-30 (213)
467 1via_A Shikimate kinase; struc 95.1 0.011 3.7E-07 59.9 3.3 24 163-186 6-29 (175)
468 1np6_A Molybdopterin-guanine d 95.0 0.0083 2.8E-07 61.0 2.4 38 856-893 7-45 (174)
469 2jaq_A Deoxyguanosine kinase; 95.0 0.012 4E-07 61.0 3.5 24 163-186 2-25 (205)
470 3bgw_A DNAB-like replicative h 94.9 0.036 1.2E-06 65.1 7.8 39 147-185 183-221 (444)
471 2v54_A DTMP kinase, thymidylat 94.9 0.012 4.1E-07 60.9 3.4 27 159-185 2-28 (204)
472 3iij_A Coilin-interacting nucl 94.9 0.012 4.2E-07 59.8 3.3 27 159-185 9-35 (180)
473 2c95_A Adenylate kinase 1; tra 94.9 0.013 4.5E-07 60.2 3.4 27 159-185 7-33 (196)
474 1xjc_A MOBB protein homolog; s 94.9 0.016 5.4E-07 58.6 3.8 26 162-187 5-30 (169)
475 2ohf_A Protein OLA1, GTP-bindi 94.8 0.007 2.4E-07 69.6 1.3 43 851-893 18-69 (396)
476 1ex7_A Guanylate kinase; subst 94.8 0.012 4.2E-07 60.5 3.0 25 162-186 2-26 (186)
477 3t61_A Gluconokinase; PSI-biol 94.8 0.0077 2.6E-07 62.6 1.4 24 855-878 18-41 (202)
478 2wjg_A FEOB, ferrous iron tran 94.8 0.014 4.7E-07 59.4 3.3 22 163-184 9-30 (188)
479 2yvu_A Probable adenylyl-sulfa 94.8 0.0091 3.1E-07 61.1 1.9 27 853-879 11-37 (186)
480 1q57_A DNA primase/helicase; d 94.8 0.3 1E-05 58.3 15.4 38 148-185 229-266 (503)
481 1ypw_A Transitional endoplasmi 94.8 0.011 3.6E-07 75.0 2.8 31 156-186 233-263 (806)
482 2zej_A Dardarin, leucine-rich 94.7 0.012 4E-07 60.0 2.6 22 163-184 4-25 (184)
483 3lw7_A Adenylate kinase relate 94.7 0.014 4.7E-07 58.5 3.1 19 163-181 3-21 (179)
484 1aky_A Adenylate kinase; ATP:A 94.7 0.016 5.6E-07 61.0 3.8 27 159-185 2-28 (220)
485 2zej_A Dardarin, leucine-rich 94.7 0.012 4E-07 60.1 2.5 22 857-878 4-25 (184)
486 1ly1_A Polynucleotide kinase; 94.7 0.016 5.4E-07 58.6 3.4 22 162-183 3-24 (181)
487 3cmw_A Protein RECA, recombina 94.7 0.048 1.6E-06 73.2 8.8 30 157-186 728-757 (1706)
488 2bwj_A Adenylate kinase 5; pho 94.7 0.0068 2.3E-07 62.6 0.6 27 159-185 10-36 (199)
489 3cm0_A Adenylate kinase; ATP-b 94.6 0.011 3.7E-07 60.4 2.1 25 853-877 2-26 (186)
490 2wwf_A Thymidilate kinase, put 94.6 0.016 5.6E-07 60.4 3.5 28 159-186 8-35 (212)
491 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.17 5.7E-06 56.7 11.9 118 853-1042 43-176 (322)
492 2ga8_A Hypothetical 39.9 kDa p 94.6 0.0021 7.2E-08 72.5 -3.8 35 844-878 11-47 (359)
493 1tev_A UMP-CMP kinase; ploop, 94.6 0.02 6.8E-07 58.6 3.9 26 160-185 2-27 (196)
494 1vht_A Dephospho-COA kinase; s 94.5 0.019 6.6E-07 60.3 3.7 24 160-183 3-26 (218)
495 2vli_A Antibiotic resistance p 94.5 0.016 5.3E-07 58.9 2.9 27 160-186 4-30 (183)
496 1xx6_A Thymidine kinase; NESG, 94.5 0.092 3.2E-06 54.1 8.7 54 323-382 80-142 (191)
497 1xp8_A RECA protein, recombina 94.5 0.21 7.2E-06 56.9 12.4 120 852-1026 71-209 (366)
498 1nn5_A Similar to deoxythymidy 94.4 0.019 6.4E-07 60.0 3.4 29 158-186 6-34 (215)
499 1gtv_A TMK, thymidylate kinase 94.4 0.0095 3.2E-07 62.3 1.0 24 163-186 2-25 (214)
500 1nks_A Adenylate kinase; therm 94.4 0.02 6.8E-07 58.5 3.4 24 163-186 3-26 (194)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.4e-73 Score=755.05 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=179.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.|+|+++.++.. ++.++|+||||+|+|||++|||||||||||||+++|.|... +.+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 57889988877421 23469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
+. ..+|+.++||||++.++.+ |++||+.|+. -|.+.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 54 5678899999999999865 9999998752 122222 3457788888877543 355566443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++ ....||+|+||+ +
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-N 1290 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-S
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-C
Confidence 5799999999999999999999999999999999999999999999864 5999999999986 467899999997 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|++++.|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3e-67 Score=694.97 Aligned_cols=214 Identities=22% Similarity=0.354 Sum_probs=171.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++.. .+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 57788887766321 12468999999999999999999999999999999999877 5699999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
+. ..+++.+|||||++.++. .||+||+.++...+ .... +.++++++..++.+. .|..++..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC-
Confidence 53 346778999999998774 69999998753211 1122 224445555554332 34445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+|||||||||+|||||+++|+||+|||||||||+.+.+.|++.|++. .+|+|||+++||++. ...||++++|+ +
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQNADLIVVIQ-N 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGSCSEEEEEE-T
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH--HHcCCEEEEEE-C
Confidence 3579999999999999999999999999999999999999999999885 469999999999873 46699999998 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999975
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.9e-58 Score=562.78 Aligned_cols=188 Identities=25% Similarity=0.279 Sum_probs=157.5
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ .+.+||++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 5889999999999999999999999999999999876 45788765 23589999998777889999988
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
.+..... ....+.++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 6531100 011345788999999988777654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCCCC
Q 001154 1004 AAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1136)
Q Consensus 1004 ~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~ 1056 (1136)
+..+++.|++++ +.|.|||++|||++ .+...+|++++|+. .|+++..|++.+
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999976 46678999999973 267777888743
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.1e-58 Score=553.95 Aligned_cols=188 Identities=26% Similarity=0.297 Sum_probs=156.0
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.|+++||+|++||++||+||||||||||+++|+|..+ +.+|+|.+ ...+||++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 5889999999999999999999999999999999876 45788765 23589999998777889999887
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
........ ...+.++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 64311110 01245678888888877666554 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCCCC
Q 001154 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~ 1056 (1136)
+..+++.|+++++ .|.|||++|||++ .+...||++++|++ .|+++..|++.+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999874 5999999999976 46778999999974 267788888743
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-56 Score=542.37 Aligned_cols=202 Identities=23% Similarity=0.249 Sum_probs=161.8
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.|+++|++|++||++||+||||||||||+++|+|... +.+|+|.+++. .++|++|+.......||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 4778899999999999999999999999999999876 45899987653 479999987776789999999
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
.+....... . ....++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 352 ~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDALS-T-----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhccc-h-----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 874211110 1 1234678888889887777654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecC-cEEEEeCCCCCchhHHHHHHHhc
Q 001154 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEAV 1068 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~g-G~~~~~g~~~~~~~~~~~~~~~~ 1068 (1136)
+..+++.|+++++ .|.|||++|||++ .+...||++++|+.+ |.....++.......+..|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999999999975 5999999999976 467789999999731 44555555443333445565544
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.3e-55 Score=549.76 Aligned_cols=214 Identities=22% Similarity=0.245 Sum_probs=136.2
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHH---------------------HHHHhhhCCCc----ceeeEEEECCcc
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---------------------LALAGRLGHHL----QVSGKITYNGHG 201 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~LaG~l~~~~----~~~G~I~~~G~~ 201 (1136)
..++|+|||++|++|++++|+||||||||||| +++.|...++. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 77777766542 125677777765
Q ss_pred CCCCCCCceEEEEeccCC-------------------CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCc
Q 001154 202 FKEFVPPRTSAYVSQQDW-------------------QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262 (1136)
Q Consensus 202 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 262 (1136)
.... +++.++||+|... .++.+||+||+.+.......... .+.. ...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~------~~~--- 175 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIA------RLI--- 175 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHH------HHH---
Confidence 4322 2334555555332 24678999999874321100000 0000 000
Q ss_pred hhHHHHHHhhccCcchhHHHHHHHHHhCCccc-ccccccCccCCCCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCH
Q 001154 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDS 339 (1136)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~--vlllDEptsgLD~ 339 (1136)
..+... ...+++.+||.+. +|..++ .|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 176 ------------~~~~~~-~~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 176 ------------LREIRD-RLGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHH-HHHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred ------------HHHHHH-HHHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000011 2246889999764 566554 599999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhH
Q 001154 340 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSV 395 (1136)
Q Consensus 340 ~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~ 395 (1136)
.++.++++.|+++... +.+||.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRDL--GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHHT--TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999999999998753 45666688888765 569999999 89999999988765
No 7
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.2e-55 Score=554.51 Aligned_cols=184 Identities=20% Similarity=0.299 Sum_probs=150.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccC-CCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1136)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+.. ....++|++|+. .+++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~---~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQ---EECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCT---TTSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccc---cceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 322 343321 112478999874 67889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~~~~ 305 (1136)
.|++.+ ...+ . ..+++.+|+.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1110 0 12367889999995 56666654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++ . +++|+.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 5999999999999999999999999999999999999999999986 2 4566668999999999999999999999
Q ss_pred EE-EecChhhHH
Q 001154 386 IV-YQGPRVSVL 396 (1136)
Q Consensus 386 iv-~~G~~~~~~ 396 (1136)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789876553
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-54 Score=530.08 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=159.6
Q ss_pred EEEeeeEEEEECC-----cEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCC
Q 001154 843 QLLVNVTGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 843 ~~L~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 917 (1136)
.+++++|+++++| |++||+||||||||||+++|+|...+ .+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------c----cCCcEEEecccccccCCc
Confidence 4677888888888 78999999999999999999998763 45642 1 123589999987766678
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+|++.... +.. .. ....++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hcc--cc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875432 111 11 1234678999999988877654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCCCCchhHHHHHHHhc
Q 001154 998 GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGSKSCELIKYFEAV 1068 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~~~~~~~~~~~~~ 1068 (1136)
|||+.++..+++.|+++. +.|.|||++|||++ ++...+|++++|+. .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 46999999999976 47778999999974 278899998765443333444444
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-41 Score=428.15 Aligned_cols=196 Identities=27% Similarity=0.412 Sum_probs=144.0
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHH---------hcccCCCC--C--ceeE------EEEEEcCccCChhc-----
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT--G--GIIE------GDIYISGYPKRQET----- 899 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 899 (1136)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + .... +.+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 47899999999999999999999999997 22222111 0 0222 34556554431100
Q ss_pred ---------------------------------------ccceEEEeccCCCCCC-------------------------
Q 001154 900 ---------------------------------------FARISGYCEQNDIHSP------------------------- 915 (1136)
Q Consensus 900 ---------------------------------------~~~~~gyv~Q~~~~~~------------------------- 915 (1136)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665554
Q ss_pred -------CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 001154 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP- 987 (1136)
Q Consensus 916 -------~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p- 987 (1136)
.+||.|++.|... . .....+.++++.++|.... .+.+ +.+|||||||||+|||||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3678888876431 1 1123467888999986432 1222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 988 --SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 988 --~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
+||||||||+|||+.+...+++.|++++++|.|||+|+|+++ ....+|++++|. +||++++.|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999888999999999964 567799999993 47999999986
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.1e-42 Score=390.63 Aligned_cols=218 Identities=24% Similarity=0.299 Sum_probs=186.6
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
-+.++|+++.+.. ..+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~---------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQ---------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEEC---------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCC---------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4667777665531 1124679999999999999999999999999999999999877 4699999999986
Q ss_pred Chh------cccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 001154 896 RQE------TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969 (1136)
Q Consensus 896 ~~~------~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 969 (1136)
... ..++.+|||+|++.+++.+||+||+.|+...+. ....+.+++++++++.++|.+..+... .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 235679999999999999999999999876542 344566678999999999998877654 589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEE
Q 001154 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048 (1136)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~ 1048 (1136)
||||||||+|||||+.+|+||||||||||||+.++..+++.|+++++ .|.|||++||+++ .+...||++++|+ +|++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~-~G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999975 4999999999976 4677899999998 5899
Q ss_pred EEeCCC
Q 001154 1049 IYAGPL 1054 (1136)
Q Consensus 1049 ~~~g~~ 1054 (1136)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999975
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9.8e-42 Score=370.67 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=173.8
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c----ccceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 914 (1136)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 579999999999999999999999999999999999877 4699999999876431 1 234699999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+.+||+||+.++...+........+..+.+.++++.+++.+.. +... .+|||||||||+|||||+.+|+|||||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999876543222234455567788999999997643 5433 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+|||+.++..+++.|++++++ |+|||++|||++ +.+.||++++|++ |+++..++..
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 999999999999999999999765 999999999975 4578999999985 7999888764
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.3e-42 Score=391.46 Aligned_cols=208 Identities=27% Similarity=0.370 Sum_probs=183.2
Q ss_pred ccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCC
Q 001154 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHS 914 (1136)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~ 914 (1136)
++.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|++.++
T Consensus 10 ~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~ 87 (381)
T 3rlf_A 10 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 87 (381)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCC
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCC
Confidence 334467789999999999999999999999999999999999887 4699999999986532 3356799999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
|.+||+||+.|+...+. .+..+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||||||
T Consensus 88 p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 88 PHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp TTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999876542 345566778999999999998887654 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 99999999999999999999755 999999999986 57888999999984 8999999863
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.4e-42 Score=390.53 Aligned_cols=208 Identities=25% Similarity=0.384 Sum_probs=180.2
Q ss_pred ccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC----Ch-hcccceEEEeccC
Q 001154 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGYCEQN 910 (1136)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~ 910 (1136)
++.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++ .. ...++.+|||+|+
T Consensus 11 s~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~ 88 (359)
T 3fvq_A 11 SKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQE 88 (359)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTT
T ss_pred EEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCC
Confidence 334467889999999999999999999999999999999999887 4699999999875 21 2345779999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+.++|.+||+||+.|+...+. ....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||
T Consensus 89 ~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 89 GVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999765432 233455677899999999998888764 489999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||||||||||+..+..+++.|+++. +.|.|||++|||++ ++...+|++++|+ +|+++..|+..
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~-~G~i~~~g~~~ 224 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMK-QGRILQTASPH 224 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEEeCHH
Confidence 9999999999999999999888775 46999999999976 5778899999998 48999999863
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.8e-41 Score=373.62 Aligned_cols=204 Identities=29% Similarity=0.390 Sum_probs=175.3
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC--h---hcccceEEEeccCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDIH 913 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gyv~Q~~~~ 913 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++.+
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l 111 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcC
Confidence 355689999999999999999999999999999999999877 46899999998763 1 2245679999999999
Q ss_pred CCCCcHHHHHHHHh-hhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 914 SPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
++.+||+||+.|+. ..+ .....+.++.++++++.++|.+..+..+ .+|||||||||+|||||+.+|+||||
T Consensus 112 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 112 FPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp CTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 99999999999864 222 1223344567889999999988777654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 243 (263)
T 2olj_A 184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKP 243 (263)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999877999999999976 46678999999985 799988874
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.3e-41 Score=365.19 Aligned_cols=202 Identities=24% Similarity=0.319 Sum_probs=173.9
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------ccc-ceEEEeccCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFA-RISGYCEQND 911 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~-~~~gyv~Q~~ 911 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .++ +.+||++|++
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 91 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH 91 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc
Confidence 355789999999999999999999999999999999999877 4689999999876421 122 5699999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++.+||+||+.+....+. ......++.++++++.+++.+..+..+ .+|||||||||+|||||+.+|++||
T Consensus 92 ~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lll 163 (224)
T 2pcj_A 92 YLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQRVAIARALANEPILLF 163 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred ccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999998765432 223344567889999999988777654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
|||||+|||+.++..+++.|++++++|+|||++|||++ ..+.||++++|++ |++++.|+
T Consensus 164 LDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEee
Confidence 99999999999999999999999877999999999965 3478999999985 79998875
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.4e-41 Score=385.05 Aligned_cols=207 Identities=21% Similarity=0.327 Sum_probs=181.1
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC------CceEEEEeccCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 220 (1136)
..++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999886 9999999999875432 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.|+.+..+... .+...+++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999866543210 0112358889999999988776654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+.. +.+|+.++|+..++..+||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 699999999999999999999999999999999999999999999997654 45666688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998874
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-41 Score=376.84 Aligned_cols=202 Identities=25% Similarity=0.342 Sum_probs=175.3
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC--h---hcccceEEEeccCCC-CCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDI-HSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gyv~Q~~~-~~~ 915 (1136)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++. .+.
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 469999999999999999999999999999999999877 46899999998873 2 235678999999863 344
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||+||+.|+...+ ..+..+.++.++++++.++|.+..+..+ .+|||||||||+|||||+.+|+|||||||
T Consensus 99 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 99 SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 789999999986543 2344556677899999999988887654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..+++.|++++ ++|+|||++||+++ .+...||++++|+ +|++++.|+..
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~-~G~i~~~g~~~ 229 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRVILQGNPK 229 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEE-TTEEEEEECHH
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999999997 56999999999987 4667899999998 48999999864
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-41 Score=374.31 Aligned_cols=204 Identities=23% Similarity=0.304 Sum_probs=175.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----------------hcccc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFAR 902 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~ 902 (1136)
+++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHHhc
Confidence 355789999999999999999999999999999999999877 468999999987641 12456
Q ss_pred eEEEeccCCCCCCCCcHHHHHHHHh-hhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHH
Q 001154 903 ISGYCEQNDIHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIA 980 (1136)
Q Consensus 903 ~~gyv~Q~~~~~~~ltv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia 980 (1136)
.+|||+|++.+++.+||+||+.|+. ..+ .......++.++++++.+++.+. .+..+ .+|||||||||+||
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIA 165 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHH
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----ccCCHHHHHHHHHH
Confidence 7999999999999999999999864 222 12233445678899999999887 77654 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 981 VELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 981 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|+.
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999877999999999976 46678999999985 799988874
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-41 Score=370.22 Aligned_cols=203 Identities=22% Similarity=0.317 Sum_probs=175.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.+
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 45789999999999999999999999999999999999876 468999999987643 23456799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.|....+. ....+.++.++++++.++|.+..+..+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 104 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 104 QGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp BHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999998754432 122334456889999999988877654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999877999999999975 35566999999985 799988864
No 20
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.4e-40 Score=412.30 Aligned_cols=195 Identities=28% Similarity=0.383 Sum_probs=147.7
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhccc-C-C--------CCCc---eeEE------EEEEcCccCChhc-----
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G-R--------KTGG---IIEG------DIYISGYPKRQET----- 899 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g-~--------~~~~---~~~G------~i~i~g~~~~~~~----- 899 (1136)
.|+|||++|++||++||+|+||||||||+++|+ | . ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 478999999999999999999999999999964 2 1 0111 2344 5889987752100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 001154 900 -----------------FARISGYCEQNDIHS----------------------P------------------------- 915 (1136)
Q Consensus 900 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 915 (1136)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 023457877743221 1
Q ss_pred -------CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 916 -------~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+|+.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3577888776321 111 123467899999976 44443 3479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 988 ---~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999994 46899998874
No 21
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.2e-41 Score=371.91 Aligned_cols=207 Identities=25% Similarity=0.301 Sum_probs=175.4
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.++
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccC
Confidence 355689999999999999999999999999999999999877 468999999987643 12345699999999888
Q ss_pred CCCcHHHHHHHHhhh-cCCC---------cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 001154 915 PGLTVLESLLFSAWL-RLPS---------EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~ 984 (1136)
+.+||+||+.++... +... .......++.++++++.+++.+..+..+ .+|||||||||+|||||+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkQrv~iAraL~ 169 (257)
T 1g6h_A 95 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLVEIGRALM 169 (257)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hhCCHHHHHHHHHHHHHH
Confidence 999999999986532 1110 0112334466889999999988777654 479999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRG 237 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEES
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999999999999877999999999987 46678999999985 799988875
No 22
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-41 Score=382.94 Aligned_cols=203 Identities=25% Similarity=0.384 Sum_probs=178.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+..++|.+|
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 44568999999999999999999999999999999999877 469999999987643 234577999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+||+.|+...+. .+..+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||||||||||
T Consensus 104 v~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 104 VYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999999865442 234455677899999999998887654 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 230 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTP 230 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999754 999999999976 57788999999984 799998875
No 23
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-40 Score=379.63 Aligned_cols=207 Identities=22% Similarity=0.348 Sum_probs=179.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccC----CCCC-CCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFV-PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~----~~~~-~~~~~~yv~Q~d~~~~ 222 (1136)
.++|+|||++|++||+++|+|||||||||||++|+|++.|+ +|+|.++|.++ .... .++.+|||+|++.++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999886 99999999987 2222 2467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||+||+.|+.+..+... .+...+++++++.+||++.+|..++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-- 137 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH-- 137 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG--
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh--
Confidence 9999999999865433211 0112358889999999988877654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|+
T Consensus 138 ---~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 138 ---ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 599999999999999999999999999999999999999999888876554 5666778999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
No 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.6e-41 Score=382.52 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=178.2
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ 916 (1136)
.++++.+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|++.++|.
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (359)
T 2yyz_A 12 YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTT
T ss_pred EECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 3456789999999999999999999999999999999999877 4699999999886432 235679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|+...+ .....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|++|||||||
T Consensus 90 ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 90 MTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99999999975433 2233344567899999999998887654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999754 999999999976 57788999999984 799998875
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.4e-41 Score=382.20 Aligned_cols=205 Identities=28% Similarity=0.362 Sum_probs=179.1
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ 916 (1136)
.+++..+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|+..++|.
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (362)
T 2it1_A 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89 (362)
T ss_dssp ESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTT
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCC
Confidence 3456689999999999999999999999999999999999877 4689999999886432 235679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|+...+. ....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||||||||
T Consensus 90 ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 90 MTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp SCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred CCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 999999999865442 234455677899999999998887654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999754 999999999976 57788999999984 799998875
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.3e-41 Score=370.39 Aligned_cols=203 Identities=23% Similarity=0.320 Sum_probs=175.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~ 915 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 356789999999999999999999999999999999999876 458999999998643 234567999999998888
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCE
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSI 989 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~------~p~i 989 (1136)
.+||+||+.++..... ....++.++++++.+++.+..+... .+|||||||||+|||||+. +|+|
T Consensus 99 ~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred CCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 9999999998754331 1223456889999999988877654 4799999999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||||+|||+.++..+++.|++++++ |+|||++|||++ .+...||++++|+ +|++++.|+..
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~-~G~i~~~g~~~ 233 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLA-QGKLVACGTPE 233 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999999999765 579999999976 4667899999998 58999999864
No 27
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-40 Score=382.91 Aligned_cols=205 Identities=26% Similarity=0.349 Sum_probs=178.9
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQN 910 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~ 910 (1136)
.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~ 89 (372)
T 1g29_1 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (372)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCC
Confidence 3456789999999999999999999999999999999999877 569999999987532 1235679999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
..++|.+||+||+.|+...+. ....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||
T Consensus 90 ~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lL 161 (372)
T 1g29_1 90 YALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVF 161 (372)
T ss_dssp CCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999865542 233455677899999999998877654 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|+.
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 224 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVLQQVGSP 224 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEe-CCEEEEeCCH
Confidence 999999999999999999999999754 999999999976 5778899999998 4799998875
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.6e-41 Score=364.25 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=171.3
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|++.++
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 93 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccC
Confidence 345679999999999999999999999999999999999876 4689999999886431 1 234599999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+.+||+||+.+...... .....++.++++++.++ +.+..+... .+|||||||||+|||||+.+|+|||||
T Consensus 94 ~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLD 164 (240)
T 1ji0_A 94 PELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp TTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99999999998642111 11233456788889884 876666543 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 223 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999778999999999975 46778999999984 799988864
No 29
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-40 Score=379.95 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=181.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
..+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999886 9999999999876543 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+|||.|+.+..+... .+...+++++++.+||++..+..+. .
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p~-----~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----A 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCGG-----G
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----H
Confidence 999999876543210 0113358899999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654 45566689999999999999999999999
Q ss_pred EEecChhhHHH
Q 001154 387 VYQGPRVSVLD 397 (1136)
Q Consensus 387 v~~G~~~~~~~ 397 (1136)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999988743
No 30
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.5e-40 Score=381.96 Aligned_cols=204 Identities=25% Similarity=0.347 Sum_probs=171.8
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|+..++|.+
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 98 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 98 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CC
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccCCCC
Confidence 356789999999999999999999999999999999999877 5699999999876432 2356799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.|+...+ .....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+|||||||||
T Consensus 99 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 99 TVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp CHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 9999999875433 2234455677899999999998887654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999765 999999999976 57788999999984 799998875
No 31
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.7e-41 Score=382.49 Aligned_cols=204 Identities=29% Similarity=0.415 Sum_probs=177.4
Q ss_pred CceE--EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC
Q 001154 840 DRLQ--LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~ 911 (1136)
++.. +|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+.
T Consensus 14 ~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~ 91 (353)
T 1oxx_K 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (353)
T ss_dssp GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence 3445 9999999999999999999999999999999999877 469999999987532 23467899999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.++|.+||+||+.|+...+ .....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+|||
T Consensus 92 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLL 163 (353)
T 1oxx_K 92 ALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLL 163 (353)
T ss_dssp CCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999976443 2234455677899999999998887654 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 164 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp EESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999654 999999999976 57788999999984 7999988753
No 32
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.4e-40 Score=356.95 Aligned_cols=208 Identities=18% Similarity=0.232 Sum_probs=170.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1136)
...+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 17 ~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred ceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 357999999999999999999999999999999999999886 9999999998865542 135999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccc-cccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~-~dt~ 298 (1136)
+++.+||+||+.++........... .+...++.++++.+||.+. .+..
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSCCCH-------------------------------HHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred cCCCCcHHHHHHHHHHhhhccCCCH-------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 9999999999999754331110000 0012347788999999874 3654
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+ ++|+.++|+.. +..+||+|
T Consensus 143 ~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHd~~-~~~~~d~i 215 (235)
T 3tif_A 143 P-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDIN-VARFGERI 215 (235)
T ss_dssp G-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHH-HHTTSSEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEcCCHH-HHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999876434 45566778876 45899999
Q ss_pred EEEcCCeEEEecChhhH
Q 001154 379 ILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1136)
++|++|+++..|+.+++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999987664
No 33
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.1e-39 Score=404.85 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001154 942 AFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVAN---PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017 (1136)
Q Consensus 942 ~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~---p~illLDEPTsgLD~~~~~~i~~~l~~l~~~ 1017 (1136)
+.+.++++.++|... .+.. +..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357889999999763 2333 357999999999999999996 6999999999999999999999999999888
Q ss_pred CCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 1018 GRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 1018 g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
|.|||+++|+++ ....+|++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999965 447899999994 46899998874
No 34
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.7e-40 Score=364.31 Aligned_cols=206 Identities=25% Similarity=0.336 Sum_probs=174.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-----CCCceEEEEeccC-CCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQD-WQVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 222 (1136)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999876 99999999987421 1235799999986 3455
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||+||+.|+....+... .+...+++++++.+||.+.++..++
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 7999999999765432110 0112357889999999988877654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|+
T Consensus 143 ---~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 143 ---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 599999999999999999999999999999999999999999999987333 4566668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999988753
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-39 Score=360.11 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=177.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999876 9999999998876533 35699999999888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.|+...... .....+++++++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999987542210 0112347889999999988776654
Q ss_pred CCCChhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 305 KGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~------~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.|||||||||+|||||+. +|++|+|||||+|||+.++.++++.|+++++. ++++|+.++|+.+++..+||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 599999999999999999 99999999999999999999999999998764 4567777999999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998863
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3e-40 Score=376.48 Aligned_cols=201 Identities=22% Similarity=0.275 Sum_probs=175.1
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ 916 (1136)
.++++ +|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|.
T Consensus 10 ~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (348)
T 3d31_A 10 KWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86 (348)
T ss_dssp ECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTT
T ss_pred EECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCC
Confidence 34556 9999999999999999999999999999999999877 469999999987643 2345679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|+...+... .. ++++++++.++|.++.+... .+|||||||||+|||||+.+|++|||||||
T Consensus 87 ltv~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 87 MNVKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp SCHHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred CCHHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 99999999986544211 11 56889999999998887654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+..+..+++.|+++.+ .|.|||++|||++ ++...+|++++|+ +|+++..|+.
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 212 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999965 4999999999976 5778899999997 4789988875
No 37
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-39 Score=372.32 Aligned_cols=206 Identities=27% Similarity=0.358 Sum_probs=179.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+.. +. +...+++++++.+||++..+..++ .
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~-----~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKPT-----Q 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 99999976543210 00 012358889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (359)
T 2yyz_A 213 VQYGTPDEVY 222 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-39 Score=371.60 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=178.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999876 9999999998865433 46799999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.|+.+..+... .+...+++++++.+||++.++..++ .|
T Consensus 106 eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-----~L 146 (355)
T 1z47_A 106 DNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFPH-----EL 146 (355)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCcc-----cC
Confidence 99999765432110 0012358889999999988876654 69
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++
T Consensus 147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876544 55666889999999999999999999999
Q ss_pred EecChhhHH
Q 001154 388 YQGPRVSVL 396 (1136)
Q Consensus 388 ~~G~~~~~~ 396 (1136)
..|+++++.
T Consensus 226 ~~g~~~~l~ 234 (355)
T 1z47_A 226 QFGTPEEVY 234 (355)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999998874
No 39
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.8e-40 Score=359.74 Aligned_cols=207 Identities=26% Similarity=0.307 Sum_probs=166.0
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC--CCCceeEEEEEEcCccCChh---cc-cceEEEeccCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQE---TF-ARISGYCEQNDI 912 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~~~~~G~i~i~g~~~~~~---~~-~~~~gyv~Q~~~ 912 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|. .. +.+|+|.++|.++... .. ++.++|++|++.
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 90 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQYPV 90 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccCCc
Confidence 3557899999999999999999999999999999999997 33 5799999999876431 12 345899999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCC-CccccccccCCCCCC-CCHHHHHHHHHHHHHhhCCCEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-TSLSGALIGLPGING-LSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~~~~~~~~~-LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+++.+||+||+.+.............+..+.++++++.+++ .+..+..+ .. |||||||||+|||||+.+|+||
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~ll 165 (250)
T 2d2e_A 91 EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYA 165 (250)
T ss_dssp -CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCSEE
T ss_pred cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999886431111111223334568899999999 46776654 36 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~ 228 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGP 228 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESH
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999998767999999999986 34455 599999985 799998875
No 40
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.3e-38 Score=398.19 Aligned_cols=195 Identities=25% Similarity=0.360 Sum_probs=144.8
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhccc-C----CC-----CCc---eeEE------EEEEcCccCChh------
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G----RK-----TGG---IIEG------DIYISGYPKRQE------ 898 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g----~~-----~~~---~~~G------~i~i~g~~~~~~------ 898 (1136)
.|+|||++|++|+++||+|+||||||||+++|. | .. .++ ...| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 478999999999999999999999999999964 2 11 111 1123 366777664210
Q ss_pred ----------------cccceEEEeccCCCCC----------------------C-------------------------
Q 001154 899 ----------------TFARISGYCEQNDIHS----------------------P------------------------- 915 (1136)
Q Consensus 899 ----------------~~~~~~gyv~Q~~~~~----------------------~------------------------- 915 (1136)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0123457777743221 1
Q ss_pred -------CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 916 -------~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+|+.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------IAG---VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------CHH---HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------chH---HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3577777765321 111 123467899999875 33433 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 988 ---~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
+||||||||+|||+.+...+++.|+++++.|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999994 47899999875
No 41
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.7e-40 Score=364.99 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=176.2
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 45666665543 45689999999999999999999999999999999999877 4689999999876
Q ss_pred C--h---hcccceEEEeccCCCCC--CCCcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 896 R--Q---ETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 896 ~--~---~~~~~~~gyv~Q~~~~~--~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
. . ..+++.+||++|++.+. +.+||+||+.|+...... ......+..+.++++++.+++.+..+..+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 457999999885321100 00111233466889999999988777654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCcHHHHHhcCEEEEEecC
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI--VCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~ti--i~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++|||++ ++...||++++|+ +
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~-~ 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK-D 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE-T
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 799999999999999999999999999999999999999999999997669999 99999986 4667899999998 4
Q ss_pred cEEEEeCCCC
Q 001154 1046 GELIYAGPLG 1055 (1136)
Q Consensus 1046 G~~~~~g~~~ 1055 (1136)
|++++.|+..
T Consensus 239 G~i~~~g~~~ 248 (279)
T 2ihy_A 239 GQSIQQGAVE 248 (279)
T ss_dssp TEEEEEEEHH
T ss_pred CEEEEECCHH
Confidence 7999888753
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-40 Score=356.22 Aligned_cols=196 Identities=23% Similarity=0.340 Sum_probs=168.9
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+|+||||++++ |++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 9999999999999999999999876 468999999987643 2345679999999999999999999
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+.|....+ . ....++.++++++.+++.+..+..+ .+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 91 l~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99864322 1 1122566889999999988777654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999754 999999999975 46678999999985 799988864
No 43
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.5e-40 Score=363.08 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=170.3
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC-CCCCCCcHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTVL 920 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~ltv~ 920 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 679999999999999999999999999999999999876 46899999998875434566799999985 456779999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
||+.|......+. .+.++.++++++.+++. +..+..+ .+|||||||||+|||||+.+|+||||||||+|
T Consensus 98 enl~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNFYPD----RDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTTCTT----SCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864322111 11234578899999998 7776654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999987 45667999999985 789888864
No 44
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-39 Score=371.86 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=178.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
.++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 36999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+... .+...+++++++.+||.+..+..++ .
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYPW-----Q 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCChh-----h
Confidence 999999765432110 0012358889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 45
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-39 Score=350.84 Aligned_cols=200 Identities=24% Similarity=0.325 Sum_probs=170.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999876 9999999998765431 1469999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.|+....+... .....+++++++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998654322100 0012347889999999988776654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+...+ .+||++++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCEEEE
Confidence 59999999999999999999999999999999999999999999998764 45566677887776 89999999
Q ss_pred EcCCeEEEecCh
Q 001154 381 LSEGQIVYQGPR 392 (1136)
Q Consensus 381 L~~G~iv~~G~~ 392 (1136)
|++|++++.|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999974
No 46
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.9e-39 Score=355.99 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=174.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC--CCC---CCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 222 (1136)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999876 999999999874 111 1346999999998899
Q ss_pred CCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 223 EMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 223 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
.+||+||+.|+. +..+... .+...+++++++.+||.+..+..++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 158 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD- 158 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred CCCHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-
Confidence 999999999853 2221100 0012347889999999988776654
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+..++..+||+|++|
T Consensus 159 ----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998764 456667889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988774
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.6e-39 Score=371.58 Aligned_cols=206 Identities=25% Similarity=0.352 Sum_probs=172.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+... .+...+++++++.+||.+.++..+ ..
T Consensus 101 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999999754432110 001235888999999998877665 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 48
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.3e-39 Score=371.59 Aligned_cols=206 Identities=26% Similarity=0.338 Sum_probs=178.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC------CC-CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------FV-PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~------~~-~~~~~~yv~Q~d~~ 220 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999876 9999999988754 22 24679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++++||+||+.|+.+..+... .+...+++++++.+||.+..+..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCcc
Confidence 999999999999765432110 0012357889999999988876654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++
T Consensus 139 -----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 139 -----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999876544 5566688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998874
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.3e-39 Score=369.21 Aligned_cols=201 Identities=24% Similarity=0.348 Sum_probs=176.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999876 9999999998865332 367999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.|+.+..+... ..+++++++.+||++..|..++ .||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~v~~~l~~~~L~~~~~~~~~-----~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLS 129 (348)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHcCCCH-------------------------------------HHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 9999754322100 0247889999999988876654 699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987654 4556668899999999999999999999999
Q ss_pred ecChhhHH
Q 001154 389 QGPRVSVL 396 (1136)
Q Consensus 389 ~G~~~~~~ 396 (1136)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 50
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-39 Score=358.23 Aligned_cols=205 Identities=22% Similarity=0.263 Sum_probs=174.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC----------CC------CCceE
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----------FV------PPRTS 211 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~----------~~------~~~~~ 211 (1136)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999876 9999999988751 11 13569
Q ss_pred EEEeccCCCCCCCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC
Q 001154 212 AYVSQQDWQVAEMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1136)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg 290 (1136)
+||+|++.+++.+||+||+.|+. ...+... .....+++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 99999998999999999999853 2221100 001234788999999
Q ss_pred Cccc-ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 001154 291 LDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1136)
Q Consensus 291 L~~~-~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1136)
|.+. ++..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. +++|+.++|+..
T Consensus 142 L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred CCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 9887 776654 59999999999999999999999999999999999999999999998764 455666889999
Q ss_pred HHHhhcCeEEEEcCCeEEEecChhhHH
Q 001154 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 370 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1136)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999988774
No 51
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.3e-39 Score=353.45 Aligned_cols=206 Identities=25% Similarity=0.296 Sum_probs=175.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1136)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999998875421 1356999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|.....+... .+...+++++++.+||++..++.++
T Consensus 105 v~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----
Confidence 9999998644321100 0012247888999999988777654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998653 5566668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999888754
No 52
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.7e-39 Score=370.11 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=177.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC-----CC-CCceEEEEeccCCCCCC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-----FV-PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 223 (1136)
+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999876 9999999988743 22 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.|+.+..+... .+...+++++++.+||++..+..++
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~~--- 139 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR--- 139 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG---
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh---
Confidence 999999999765432110 0012348889999999988876654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++
T Consensus 140 --~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 140 --ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp --GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999876544 5566688999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 53
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.7e-39 Score=355.40 Aligned_cols=216 Identities=23% Similarity=0.328 Sum_probs=174.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999876 9999999998764322 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.|+......+ .+.... ...... .......+++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~~~~-------~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLNSLF-------YKKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHHHHH-------HCSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CcHHHHHHHHHhhhccC-cccccc-------cccccC-------------CHHHHHHHHHHHHHHcCCchhhCCCch---
Confidence 99999999864320000 000000 000000 000112347889999999988777664
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+.+++..+||+|++|++
T Consensus 153 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 153 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998753 45666688999999999999999999
Q ss_pred CeEEEecChhh
Q 001154 384 GQIVYQGPRVS 394 (1136)
Q Consensus 384 G~iv~~G~~~~ 394 (1136)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999887
No 54
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-39 Score=350.01 Aligned_cols=204 Identities=26% Similarity=0.365 Sum_probs=171.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999876 9999999998765432 2359999999998999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-CcccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-L~~~~dt~vg~~ 302 (1136)
+||+||+.|+.... .. . ......++.+++.++ |.+..+..+
T Consensus 96 ltv~enl~~~~~~~-~~-~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-K---------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-S---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CC-H---------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863211 00 0 001223677888884 877766654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ . +++|+.++|+..++..+||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999875 3 4556668899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999987764
No 55
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.5e-39 Score=354.09 Aligned_cols=219 Identities=22% Similarity=0.295 Sum_probs=175.4
Q ss_pred eeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC
Q 001154 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1136)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1136)
+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 21 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 21 LSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5666665543 456899999999999999999999999999999999997422257999999998764
Q ss_pred h---hcc-cceEEEeccCCCCCCCCcHHHHHHHHhh-hc---CCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 001154 897 Q---ETF-ARISGYCEQNDIHSPGLTVLESLLFSAW-LR---LPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGIN 967 (1136)
Q Consensus 897 ~---~~~-~~~~gyv~Q~~~~~~~ltv~e~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 967 (1136)
. ... ++.+||++|++.+++.+||.|++.+... ++ ........+..+.++++++.+++. ...+..+. .
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~ 163 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 163 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----T
T ss_pred cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----c
Confidence 2 122 3358999999999999999999987531 11 111122333456788999999996 45555432 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCc
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGG 1046 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG 1046 (1136)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G 241 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 241 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-T
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-C
Confidence 49999999999999999999999999999999999999999999998767999999999976 34444 899999985 7
Q ss_pred EEEEeCCC
Q 001154 1047 ELIYAGPL 1054 (1136)
Q Consensus 1047 ~~~~~g~~ 1054 (1136)
++++.|+.
T Consensus 242 ~i~~~g~~ 249 (267)
T 2zu0_C 242 RIVKSGDF 249 (267)
T ss_dssp EEEEEECT
T ss_pred EEEEEcCH
Confidence 99998876
No 56
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.2e-38 Score=349.90 Aligned_cols=194 Identities=24% Similarity=0.350 Sum_probs=164.5
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|. +++.+||++|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE----------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE----------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE----------EeccEEEEcCCCccCCCCCHH
Confidence 4679999999999999999999999999999999999877 4689998 245689999999998899999
Q ss_pred HHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 921 ESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 921 e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
||+.+....... ........++.++++++.+++.+..+... .+|||||||||+|||||+.+|+||||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999986432210 00011233456889999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.++..+++.|+++.++ |+|||++|||++ .+...||++++|++ |+ ++.|+.
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999776 999999999976 46678999999985 67 887764
No 57
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.9e-39 Score=358.83 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=166.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|||++|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999876542 467999999998775 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.|+..... .+.+.++.+ ..+ ....++ .++...+|.+|+ ..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~~~~---~~~------------------------l~~~i~--~lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEAAAQ---AAG------------------------IHDAIM--AFPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHHHHH---HHT------------------------CHHHHH--HSTTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----HHHHHHHHH---HhC------------------------cHHHHH--hccchhhhHhcC-Cc
Confidence 99999998643110 010110000 000 111111 244567888885 45
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|+||+|||||||||+.+...|.+.|+++.+ ++ ++|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NR-TTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TS-EEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CC-EEEEEEcChHHHHc-CCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998754 34 55558888888866 9999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
++++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 58
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6e-39 Score=359.82 Aligned_cols=211 Identities=25% Similarity=0.338 Sum_probs=172.3
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEE
Confidence 3577788877652 23579999999999999999999999999999999999877 469999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 964 (1136)
+.. ..+++.+|||+|++.+++ .||+||+.|+... .. .+.++++++.+++.+.. +..++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 753 345778999999998885 5999999986321 11 12355666666665433 2333332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+|||||||||+|||||+.+|+|||||||||+||+.+...|++.|+++. +++|||+|||+++ ....+|++++|+
T Consensus 188 -g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~aD~i~vl~- 262 (306)
T 3nh6_A 188 -GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS--TVVNADQILVIK- 262 (306)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHH--HHHTCSEEEEEE-
T ss_pred -cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChH--HHHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999985 4799999999975 345699999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 263 ~G~iv~~G~~ 272 (306)
T 3nh6_A 263 DGCIVERGRH 272 (306)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
Confidence 4899999985
No 59
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.4e-39 Score=348.00 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=172.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999876 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.|+....+. . . ...+++++++.+||.+..+..++ .||
T Consensus 90 nl~~~~~~~~~----~------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----V------E--------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH----H------H--------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC----c------h--------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99986432210 0 0 01247788999999887776654 599
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+ ++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865434 455567899999999999999999999999
Q ss_pred ecChhhHH
Q 001154 389 QGPRVSVL 396 (1136)
Q Consensus 389 ~G~~~~~~ 396 (1136)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99988774
No 60
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.3e-39 Score=350.16 Aligned_cols=194 Identities=23% Similarity=0.353 Sum_probs=168.1
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
.+|+||||+|++||++||+||||||||||+++|+|..+ +. |+|.++|.++.. ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47999999999999999999999999999999999877 46 999999987632 3345679999999998899999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-------EEEE
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS-------IVFM 992 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~-------illL 992 (1136)
+||+.+... +. .. ++.++++++.+++.+..+... .+|||||||||+|||||+.+|+ +|||
T Consensus 91 ~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 999987521 11 11 345789999999988777653 4799999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|+++.++|+|||++|||++ .+...+|++++|++ |++++.|+.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999767999999999976 45678999999984 789988865
No 61
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.3e-39 Score=356.23 Aligned_cols=202 Identities=25% Similarity=0.314 Sum_probs=162.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+|||+|++.+++ .|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RS 108 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SB
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-cc
Confidence 568999999999999999999999999999999999877 468999999987643 234567999999998887 59
Q ss_pred HHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 919 VLESLLFSAWLRLP-SEIELETQRAFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 919 v~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
|+||+.|....... ...........++++++.+ ++....+.. +.+|||||||||+|||||+.+|+|||||||
T Consensus 109 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 109 FRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999885321100 0000111122345667766 565555543 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+++.|+++.+ .|+|||++||+++ ....||++++|++ |+++..|+.
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~i~~~g~~ 240 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GSVCEQGTH 240 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TEEEEEECH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999864 4999999999965 3456999999985 799988875
No 62
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.6e-39 Score=349.54 Aligned_cols=197 Identities=26% Similarity=0.413 Sum_probs=163.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 917 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 4579999999999999999999999999999999999876 468999999988643 234567999999998876 5
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------ccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
||+||+.|... ... .+.++++++.+++.+..+.. .+. .+..|||||||||+|||||+.+|+||
T Consensus 98 tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 98 SIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp BHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 111 23456778888887655432 111 24589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |++++.|+.
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 227 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH 227 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999985 69999999999763 3 56999999985 799988874
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-39 Score=346.35 Aligned_cols=187 Identities=20% Similarity=0.289 Sum_probs=160.1
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++ .+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.+||++|++.+++.+|
T Consensus 20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~t 94 (214)
T 1sgw_A 20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKIS 94 (214)
T ss_dssp SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSB
T ss_pred eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCC
Confidence 345 79999999999999999999999999999999999876 46899999998765 35677999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+||+.+....+.. .. . ++.++++++.+++.+. +... .+|||||||||+|||||+.+|++|||||||+|
T Consensus 95 v~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~ 163 (214)
T 1sgw_A 95 VEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163 (214)
T ss_dssp HHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 99999987544321 11 1 3457889999999876 5543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
||+.++..+++.|+++.++|+|||++||+++ .+...+|+++++
T Consensus 164 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 9999999999999999766999999999987 455667776655
No 64
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-38 Score=348.48 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=173.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccC-CCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999876 999999998765322245799999995 56778999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc--ccccccccCccC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLVGDEML 304 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~--~~~dt~vg~~~~ 304 (1136)
+||+.|+.... ... .....+++++++.+||. +..+..++
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~---- 137 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVPF---- 137 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCGG----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCChh----
Confidence 99999864321 000 01123478899999998 77776654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..+||++++|++|
T Consensus 138 -~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 138 -FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998754 456666889888999999999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
++++.|+.+++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
No 65
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-37 Score=339.91 Aligned_cols=200 Identities=26% Similarity=0.407 Sum_probs=162.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999998865432 356999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccc-------cc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-------DT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~-------dt 297 (1136)
||+||+.|+.. ... ...++.+++.+||.+.. ++
T Consensus 98 tv~enl~~~~~----~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP----GMS------------------------------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT----TCC------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC----CCC------------------------------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 000 01133445555554432 34
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +++|+.++|+...+. .||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--g~tviivtH~~~~~~-~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K--GRTVIIIAHRLSTVK-NADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T--TSEEEEECSSGGGGT-TSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C--CCEEEEEeCCHHHHH-hCCE
Confidence 4443 456899999999999999999999999999999999999999999999984 2 445555778777764 5999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988774
No 66
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-38 Score=347.11 Aligned_cols=199 Identities=25% Similarity=0.388 Sum_probs=165.0
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 4568999999999999999999999999999999999876 468999999987643 235667999999998877 5
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
||+||+.|... + ... ++.++++++.+++.+..+.... ...+.+|||||||||+|||||+.+|+||+
T Consensus 91 tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll 162 (243)
T 1mv5_A 91 TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162 (243)
T ss_dssp EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999987421 1 111 2346788888898776654310 11245899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.+|++++|++ |+++..|+.
T Consensus 163 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 163 LDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp EECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCH
T ss_pred EECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 6999999999975 3456999999985 799888764
No 67
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.4e-38 Score=347.56 Aligned_cols=209 Identities=24% Similarity=0.298 Sum_probs=169.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC--CCC---CCceEEEEeccCCCC-
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQV- 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~- 221 (1136)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999876 999999998875 322 135699999997533
Q ss_pred -CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 222 -AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 222 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
+.+||+||+.|+..... . .+. .+. .+...+++++++.+||.+..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~--------------~~~--------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ--------------DID--------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc--------------CCc--------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999988532100 0 000 000 0012347889999999988777664
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEE-EEEecChhHHHhhcCeEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV-ISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~i-i~~~q~~~~~~~~~D~vi 379 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+. +.++|+..++..+||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 59999999999999999999999999999999999999999999998764 44540 567899999999999999
Q ss_pred EEcCCeEEEecChhhH
Q 001154 380 LLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1136)
+|++|++++.|+++++
T Consensus 235 ~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998776
No 68
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.4e-37 Score=344.84 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=166.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999988754322 356999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh--CCcccccccccCc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l--gL~~~~dt~vg~~ 302 (1136)
||+|||.|+.... .. .+...+.. . ...++.+++.+ ||+...+..
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~---~------------------------~~~~~~~l~~l~~gl~~~~~~~---- 153 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVA---M------------------------ESGAHDFISGFPQGYDTEVGET---- 153 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHH---H------------------------HHTCHHHHHHSTTGGGSBCCGG----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHH---H------------------------HHhHHHHHHhhhcchhhhhcCC----
Confidence 9999999864211 00 00000000 0 11245667777 676555443
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+.. +++||+++|+...+. .||+|++|+
T Consensus 154 -~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 154 -GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp -GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999875432 455666788887775 599999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|++++.|+.+++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 69
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.2e-37 Score=341.42 Aligned_cols=195 Identities=26% Similarity=0.392 Sum_probs=159.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|... + +|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ET 108 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cC
Confidence 468999999999999999999999999999999999875 3 7999999987642 234667999999998886 69
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
|+||+.|+.. ... ++.+.++++.+++.+..+ ..++. .+..|||||||||+|||||+.+|+|||
T Consensus 109 v~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 109 IKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999987421 111 123556777777654322 22222 245899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|++++|++ |+++..|+.
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 237 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTH 237 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECH
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999986 48999999999863 3 56999999985 799988874
No 70
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.8e-37 Score=340.49 Aligned_cols=205 Identities=22% Similarity=0.263 Sum_probs=163.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh--hCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~--l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1136)
.++|+|||++|++|++++|+|||||||||||++|+|. ++| .+|+|.++|.++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999997 444 49999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC-cccccccc
Q 001154 222 AEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLV 299 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL-~~~~dt~v 299 (1136)
+.+||+||+.++... .+... .. .+...+++++++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~-------------------~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV-------------------GV-------------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC-------------------CH-------------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC-------------------CH-------------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999885421 11000 00 0012347789999999 47777655
Q ss_pred cCccCCC-CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCe
Q 001154 300 GDEMLKG-ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDD 377 (1136)
Q Consensus 300 g~~~~~~-LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~ 377 (1136)
+ . |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .+++|+.++|+..++..+ +|+
T Consensus 141 ~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 N-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp T-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSE
T ss_pred c-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCE
Confidence 4 5 999999999999999999999999999999999999999999998854 255666688888888888 599
Q ss_pred EEEEcCCeEEEecChhh
Q 001154 378 VILLSEGQIVYQGPRVS 394 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~ 394 (1136)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
No 71
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.9e-37 Score=340.06 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=162.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEE-EeccCCCCCCCCcHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG-YCEQNDIHSPGLTVL 920 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~~~~~ltv~ 920 (1136)
+.+|+|+||+++ ||++||+||||||||||+++|+|.. + .+|+|.++|.++.....++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 679999999999 9999999999999999999999987 4 5899999998754211255789 99999877 89999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
||+.+...++ .. .++.++++++.+++. +..+... .+|||||||||+|||||+.+|++|||||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999865433 11 124578899999998 7776654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC-EEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD-ELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d-~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.++..+++.|+++.+ |||++||+++ .+...|| ++++|++ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999998743 9999999986 4567899 9999984 799988864
No 72
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.7e-37 Score=335.83 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=169.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1136)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999865 4 999999988754321 356999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|+... .. . ..+++++++.+||.+..+..+ .
T Consensus 90 v~e~l~~~~~~-~~----~----------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT----R----------------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCSS-TT----C----------------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhcc-CC----c----------------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 99999875210 00 0 123678899999988777655 4
Q ss_pred CCChhhhhHHHHHHHHhCCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 306 GISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~-------vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.|||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998754 456666889999999999999
Q ss_pred EEEcCCeEEEecChhhH
Q 001154 379 ILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1136)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3e-37 Score=337.45 Aligned_cols=202 Identities=24% Similarity=0.326 Sum_probs=165.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45999999999999999999999999999999999999876 999999999875432 3467999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc-------
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT------- 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt------- 297 (1136)
||+||+.|+... ... ...++.+++.+||.+..+.
T Consensus 91 tv~enl~~~~~~---~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS---CSC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC---CCC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 000 1125566777887765443
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +++|+.++|+...+. .||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--~~tvi~vtH~~~~~~-~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K--GRTTLVIAHRLSTIV-DADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T--TSEEEEECCSHHHHH-HCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCChHHHH-hCCE
Confidence 333 3456899999999999999999999999999999999999999999999885 2 445556778777664 6999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887753
No 74
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-36 Score=332.63 Aligned_cols=197 Identities=18% Similarity=0.234 Sum_probs=165.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 36999999999999999999999999999999999999876 999982 34699999999888899999
Q ss_pred HHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 228 ETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
||+.|+.... +.... +. .....+++++++.+||.+..+..++ .
T Consensus 85 enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKREFT-----S 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred HHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcCChh-----h
Confidence 9999864221 10000 00 0012347889999999988776554 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999987542 4566668899999999999999999999
Q ss_pred EEecChhhH
Q 001154 387 VYQGPRVSV 395 (1136)
Q Consensus 387 v~~G~~~~~ 395 (1136)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
No 75
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.8e-37 Score=337.54 Aligned_cols=223 Identities=22% Similarity=0.247 Sum_probs=172.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|||++|++|++++|+|||||||||||++|+|.+.. .+.+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 4699999999999999999999999999999999998421 1349999999988754332 2348999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~ 302 (1136)
+||+|++.+...... ...+..... ..+...+++++++.+||+ ...+..++
T Consensus 112 ~tv~e~~~~~~~~~~---------------~~~~~~~~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 162 (267)
T 2zu0_C 112 VSNQFFLQTALNAVR---------------SYRGQETLD------------RFDFQDLMEEKIALLKMPEDLLTRSVN-- 162 (267)
T ss_dssp CBHHHHHHHHHHHHH---------------HGGGCCCCC------------HHHHHHHHHHHHHHTTCCTTTTTSBTT--
T ss_pred ccHHHHHHHHHHhhh---------------hhhccccCC------------HHHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 999999987531100 000000000 001123478899999996 45565443
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCeEEEE
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVILL 381 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~vilL 381 (1136)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .+++|+.++|+..++..+ ||+|++|
T Consensus 163 --~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 163 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp --TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred --cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 14999999999999999999999999999999999999999999998753 245666688888888776 8999999
Q ss_pred cCCeEEEecChhhHHHHHHhcCCC
Q 001154 382 SEGQIVYQGPRVSVLDFFASMGFS 405 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~~~F~~~Gf~ 405 (1136)
++|++++.|+++++.. ++..||.
T Consensus 239 ~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp ETTEEEEEECTTHHHH-HHTTTCT
T ss_pred ECCEEEEEcCHHHHhh-hhhcchh
Confidence 9999999999987753 4444443
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.3e-36 Score=335.25 Aligned_cols=200 Identities=23% Similarity=0.312 Sum_probs=161.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|||+.|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4599999999999999999999999999999999998752 799999998875432 2357999999998775 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh-------CCcccccc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-------GLDTCADT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l-------gL~~~~dt 297 (1136)
||+||+.|+.. .... ..+.++++.+ ++++..||
T Consensus 108 tv~enl~~~~~----~~~~------------------------------------~~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL----DATD------------------------------------EEVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT----TCCH------------------------------------HHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC----CCCH------------------------------------HHHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 0000 0122233333 34555677
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ + ++|+.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~-~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--N-RTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--T-SEEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHH-HhCCE
Confidence 6654 4568999999999999999999999999999999999999999999998853 4 4556677877766 46999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-36 Score=332.99 Aligned_cols=194 Identities=20% Similarity=0.197 Sum_probs=166.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEE-EEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 86 999999998764321256799 99999875 8999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~~~~ 305 (1136)
+||+.|...... ....+++.+++.+||. +..+..++
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKLY----- 127 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBGG-----
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCChh-----
Confidence 999988543210 0012477889999998 77766554
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC-eEEEEcCC
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD-DVILLSEG 384 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D-~vilL~~G 384 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998753 2 66668899999999999 99999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999988875
No 78
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.4e-36 Score=327.16 Aligned_cols=186 Identities=24% Similarity=0.376 Sum_probs=149.3
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 4578999999999999999999999999999999999877 4689999998 28999999988875 999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
||+.|+.. .... ..+++++.+++.+..+. .++. .+..|||||||||+|||||+.+|++||||
T Consensus 87 enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 87 ENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99987531 1111 12344444554432221 1221 23589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRT-VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++. ++++. +|+|||++||+++ ....+|++++|++ |++++.|+.
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TEEEEEECH
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999997 45554 4899999999975 3456999999985 789988864
No 79
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=354.90 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=172.3
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++ .++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.++
T Consensus 19 ~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 466677765542 134679999999999999999999999999999999999864 589999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGI 966 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~~ 966 (1136)
.. ..+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.++.+..... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 53 335678999999999987 69999996421 111 24577899999998877665321 112
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
.+|||||||||+|||||+.+|+||||||||||||+..+..+++.|+++. .++|||++|||++ ....+|++++|+ +|
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~-~G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIE-EN 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEE-TT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEE-CC
Confidence 3499999999999999999999999999999999999999999999864 5899999999965 456699999998 58
Q ss_pred EEEEeCCC
Q 001154 1047 ELIYAGPL 1054 (1136)
Q Consensus 1047 ~~~~~g~~ 1054 (1136)
+++..|+.
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 99999975
No 80
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=351.84 Aligned_cols=200 Identities=24% Similarity=0.293 Sum_probs=163.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|||++|++||+++|+|||||||||||++|+|+++ . +|+|.++|+++..... ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 469999999999999999999999999999999999875 3 8999999999876543 367999999998887 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC---
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD--- 301 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~--- 301 (1136)
||+||+.+... . ...+++++++.+||.+..+.....
T Consensus 109 tv~enl~~~~~-----~------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----H------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----S------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----c------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964211 0 012356677888887655544321
Q ss_pred ---ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 302 ---EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 302 ---~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+...+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+++++.++|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCEE
Confidence 2234599999999999999999999999999999999999999999998753 245566677775 456779999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 001154 379 ILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1136)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
No 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=328.54 Aligned_cols=186 Identities=25% Similarity=0.368 Sum_probs=148.5
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|. +||++|++.+ +.+||+
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~~-~~~tv~ 83 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGS----------VAYVPQQAWI-QNDSLR 83 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECSC----------EEEECSSCCC-CSEEHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE----------EEEEcCCCcC-CCcCHH
Confidence 3568999999999999999999999999999999999877 67999999982 8999999864 588999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
||+.|.... . .. ..+++++.+++.+.. +...+. .+.+|||||||||+|||||+.+|+|||||
T Consensus 84 enl~~~~~~--~----~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 84 ENILFGCQL--E----EP----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp HHHHTTSCC--C----TT----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHhhCcccc--C----HH----HHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999875321 1 11 122334444332211 111121 24589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVR---NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~---~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..+|++++|++ |+++..|+.
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 212 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSY 212 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECH
T ss_pred CcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCH
Confidence 9999999999999999995 333 58999999999873 3 57999999985 799988875
No 82
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.8e-36 Score=323.11 Aligned_cols=196 Identities=22% Similarity=0.313 Sum_probs=151.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999876 99999998 48999999988775 999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.|+.... . ....+. .+.. .+...++. ++...+|.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~------------------~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH------------------HHHT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH------------------HHHh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9998853210 0 000000 0000 01111222 22233455553 35689
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +.+. .+++|+.++|+..++. .||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999964 4442 2355666778877764 5999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999988774
No 83
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.8e-36 Score=325.13 Aligned_cols=199 Identities=23% Similarity=0.351 Sum_probs=152.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46999999999999999999999999999999999998765 99999998 4899999986 5688999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC-cccccccccCccCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL-~~~~dt~vg~~~~~~ 306 (1136)
||+.|+.... ... ..+. .+ ...+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~---~~~~------------------~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---YRSV------------------IQ------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---HHHH------------------HH------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---HHHH------------------HH------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9998853211 000 0000 00 0011223333 222334444 34668
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999985211111245566677777765 57999999999999
Q ss_pred EEecChhhHHH
Q 001154 387 VYQGPRVSVLD 397 (1136)
Q Consensus 387 v~~G~~~~~~~ 397 (1136)
++.|+++++..
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999988753
No 84
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.3e-36 Score=366.72 Aligned_cols=208 Identities=25% Similarity=0.383 Sum_probs=166.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.+... ++.++||+|++++++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46999999999999999999999999999999999999886 9999999998876542 4579999999998875
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.|+... ...+.+.+.++. .+ .++. .-.+++..||.+|+. .
T Consensus 430 tv~eni~~~~~~----~~~~~~~~~~~~---~~------------------------~~~~--~~~lp~g~~t~~~~~-g 475 (578)
T 4a82_A 430 TVKENILLGRPT----ATDEEVVEAAKM---AN------------------------AHDF--IMNLPQGYDTEVGER-G 475 (578)
T ss_dssp BHHHHHGGGCSS----CCHHHHHHHHHH---TT------------------------CHHH--HHTSTTGGGCBCCGG-G
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHH---hC------------------------cHHH--HHhCcchhhhhhccC-C
Confidence 999999885311 111111111100 00 0111 124667788999864 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|..+.+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-~i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRT-TLIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHH-HcCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999988743 444 55577877776 459999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 85
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-36 Score=321.85 Aligned_cols=188 Identities=16% Similarity=0.223 Sum_probs=156.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999876 999999998775 23567999999998899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.|+....+. . .. ..+++++++.+||++. +..+ ..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~~-----~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKKL-----GELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCCh-----hhCC
Confidence 99886432210 0 00 2247788999999876 5544 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998653 345556778888888888887755 3443
No 86
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-35 Score=365.01 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=166.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46999999999999999999999999999999999999886 9999999999876543 467999999998886 4
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.++... ...+...+.+ +..+ ..+.+ -.|++..||.+|+. .
T Consensus 432 tv~eni~~~~~~----~~~~~~~~~~---~~~~------------------------~~~~i--~~l~~g~~~~~~~~-~ 477 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDDEIVEAA---KIAQ------------------------IHDFI--ISLPEGYDSRVERG-G 477 (587)
T ss_dssp EHHHHHTTTCSS----CCHHHHHHHH---HHTT------------------------CHHHH--HTSSSGGGCEECSS-S
T ss_pred cHHHHHhccCCC----CCHHHHHHHH---HHhC------------------------cHHHH--HhcccchhhHhcCC-C
Confidence 999999875321 1101111111 0000 11111 24666788999864 5
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++.+ +.+++.++|..+.+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK---GCTTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST---TCEEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC---CCEEEEEecChHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998642 44555577877766 589999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 87
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.7e-35 Score=361.00 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=166.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999876 9999999999876542 357999999998876 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-------L~~~~dt 297 (1136)
||+|||.|+..... ... +.+++++++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~-~~~------------------------------------~~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS-SVT------------------------------------AEEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT-TSC------------------------------------HHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc-ccC------------------------------------HHHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998632100 000 112344444444 4566889
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++ +++.++|....+ ..||+
T Consensus 476 ~~~~~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~-tvi~itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGEK-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GR-TVLVIAHRLSTI-KNANM 550 (595)
T ss_dssp BCSSS-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TS-EEEEECCCHHHH-HHSSE
T ss_pred cccCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CC-EEEEEecCHHHH-HcCCE
Confidence 99864 567999999999999999999999999999999999999999999998864 44 555577777766 46999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
No 88
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5e-35 Score=359.86 Aligned_cols=202 Identities=24% Similarity=0.361 Sum_probs=164.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 35999999999999999999999999999999999999886 999999999886543 2467999999998886 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-------L~~~~dt 297 (1136)
||+||+.++.. ..... ..++++++.+| +++..||
T Consensus 432 tv~eni~~~~~---~~~~~------------------------------------~~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE---GEYTR------------------------------------EQIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC---CCCCH------------------------------------HHHHHHHHHCCCHHHHHhCcccccc
Confidence 99999988531 00000 01223333333 3456788
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+|+. ..+||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++| ++.++|....+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKT-VLVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHH-HhCCE
Confidence 89864 567999999999999999999999999999999999999999999998753 444 55566776665 47999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 89
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-35 Score=365.34 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=172.0
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.++|+++.++. ++..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 35778888776531 34568999999999999999999999999999999999877 569999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 964 (1136)
+.. ..+++.+|||+|++.+++. |++||+.++.. .... +.++++++..++.+. .+..++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 653 3457789999999998865 99999987521 1111 223455555555332 23334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ....+|++++|+
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~- 551 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH- 551 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE-
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE-
Confidence 45799999999999999999999999999999999999999999999974 5999999999975 456899999998
Q ss_pred CcEEEEeCCCC
Q 001154 1045 GGELIYAGPLG 1055 (1136)
Q Consensus 1045 gG~~~~~g~~~ 1055 (1136)
+|+++..|+..
T Consensus 552 ~G~i~~~g~~~ 562 (587)
T 3qf4_A 552 EGKVAGFGTHK 562 (587)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 58999999863
No 90
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.7e-35 Score=360.22 Aligned_cols=216 Identities=25% Similarity=0.373 Sum_probs=175.6
Q ss_pred eeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC
Q 001154 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1136)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1136)
+.++|+++.++. ..+..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 342 i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 777888776521 012479999999999999999999999999999999999876 56899999998865
Q ss_pred h---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCCCC
Q 001154 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPGI 966 (1136)
Q Consensus 897 ~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~~ 966 (1136)
. ..+++.+|||+|++.+++ .||+||+.++...+ .... ++.++++++.+++.+.. ++.++.. +
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~ 481 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-G 481 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-S
T ss_pred hCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-C
Confidence 3 345678999999999886 59999999853211 0111 24467888888876543 3444433 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++ ..+.+|++++|++ |
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~-G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLDQ-G 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999865 899999999975 4467999999984 7
Q ss_pred EEEEeCCCCC
Q 001154 1047 ELIYAGPLGS 1056 (1136)
Q Consensus 1047 ~~~~~g~~~~ 1056 (1136)
+++..|+..+
T Consensus 558 ~i~~~g~~~~ 567 (595)
T 2yl4_A 558 KITEYGKHEE 567 (595)
T ss_dssp EEEEEECSCC
T ss_pred EEEEECCHHH
Confidence 9999998643
No 91
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.4e-35 Score=362.06 Aligned_cols=212 Identities=24% Similarity=0.391 Sum_probs=172.3
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.++|+++.++. ++..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 35777887776531 23568999999999999999999999999999999999877 569999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 964 (1136)
+.. ..+++.+|||+|++.+++. ||+||+.++. + ... ++.+.++++..++.+.. +..++..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 643 3456789999999998876 9999998752 1 111 12355666666664432 3333332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+||||||||++|||||+++|+||+|||||||||+.++..+.+.++++. +|+|+|++||+++. .+.+|++++|+
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~- 549 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE- 549 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE-
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999874 58999999999873 46799999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 550 ~G~i~~~g~~ 559 (578)
T 4a82_A 550 NGHIVETGTH 559 (578)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
Confidence 5899999985
No 92
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.6e-35 Score=360.11 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=165.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46999999999999999999999999999999999999886 9999999999876532 357999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-------L~~~~dt 297 (1136)
||+||+.|+.. . ....+ +++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~~------------------------------------~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EYSRE------------------------------------QIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CCCHH------------------------------------HHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CCCHH------------------------------------HHHHHHHHcCCHHHHHhccccccc
Confidence 99999998531 0 00000 1223333333 3456789
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|....+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSE-EEEECSCGGGT-TTCSE
T ss_pred cccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCE-EEEEeccHHHH-HhCCE
Confidence 99864 568999999999999999999999999999999999999999999998853 444 55567777665 57999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 93
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-35 Score=363.86 Aligned_cols=208 Identities=23% Similarity=0.319 Sum_probs=165.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 35999999999999999999999999999999999999886 9999999998876543 457999999998775 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.++... ...+.+.+.+ ...+ .+..+ -.+++..||.+|+. .
T Consensus 444 tv~eni~~~~~~----~~~~~~~~~~---------------------~~~~------~~~~~--~~~~~g~~t~~~~~-g 489 (598)
T 3qf4_B 444 TVKENLKYGNPG----ATDEEIKEAA---------------------KLTH------SDHFI--KHLPEGYETVLTDN-G 489 (598)
T ss_dssp BHHHHHHSSSTT----CCTTHHHHHT---------------------TTTT------CHHHH--HTSTTGGGCBCHHH-H
T ss_pred cHHHHHhcCCCC----CCHHHHHHHH---------------------HHhC------CHHHH--HhccccccchhcCC-C
Confidence 999999885321 0001111000 0000 11111 13566778999864 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+ + .+++.++|....+. .||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~-~t~i~itH~l~~~~-~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--G-KTSIIIAHRLNTIK-NADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--T-SEEEEESCCTTHHH-HCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--C-CEEEEEecCHHHHH-cCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 4 45555777777665 49999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 94
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.8e-35 Score=359.95 Aligned_cols=212 Identities=25% Similarity=0.355 Sum_probs=173.4
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 4677777665421 12568999999999999999999999999999999999876 4689999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------ccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++. |++||+.++.. + +.. ++.++++++.+++.+..+ ..++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 3456789999999998875 99999988531 1 111 234677888888765433 334433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|+|++||+++ ..+.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH--HHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 999999999986 3467999999985
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 799998874
No 95
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.7e-35 Score=361.00 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=173.8
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 4677777766521 12569999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++. |++||+.++.. + +.. ++.++++++.+++.+..+. .++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 3467789999999998875 99999987531 1 111 2346788888888655433 23332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ..+.+|++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999986 4999999999975 4467999999985
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 799998875
No 96
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-35 Score=360.75 Aligned_cols=210 Identities=25% Similarity=0.384 Sum_probs=169.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++ ++..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 577777776552 23468999999999999999999999999999999999877 4699999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++ .||+||+.++.. .... +.++++++.+++.+..+. .++. .
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD-N 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH-H
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-C
Confidence 43 346778999999998886 599999987521 1111 224555555555443322 2221 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +|+|+|++||+++. .+.+|++++|+ +
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~-~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLR-D 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEEC-S
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE-C
Confidence 24799999999999999999999999999999999999999999999985 59999999999873 45699999998 4
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 565 G~i~~~g~~ 573 (598)
T 3qf4_B 565 GEIVEMGKH 573 (598)
T ss_dssp SSEEECSCH
T ss_pred CEEEEECCH
Confidence 799999975
No 97
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.1e-34 Score=320.06 Aligned_cols=184 Identities=23% Similarity=0.384 Sum_probs=147.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 458999999999999999999999999999999999877 6799999998 27999999988875 9999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
|+. +. .. .. ..++++++.+++.+..+. .++. .+..||||||||++|||||+.+|++|||||
T Consensus 118 nl~-~~--~~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--SY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--CC----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--cc----ch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 11 11 112344555555432221 1111 135799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 995 PTSGLDARAAAIVMRTV-RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+|||+.++..+++.+ +++. +|+|||++||+++ ....||++++|++ |++++.|+.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~ 242 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 242 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCH
Confidence 99999999999999974 4553 5899999999975 3456999999984 799988875
No 98
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.7e-34 Score=383.22 Aligned_cols=212 Identities=25% Similarity=0.380 Sum_probs=169.2
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 222 (1136)
.+.++|+|||++|+|||.++|+||+|||||||+++|.|.++|. +|+|.+||.++.+... ++.++||||++.+|.
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC
Confidence 3456999999999999999999999999999999999999886 9999999999988754 578999999998776
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.||||||.|+..-. ....+.+.++++. ++ ..+. .-.|++..||.||+.
T Consensus 1167 -gTIreNI~~gld~~--~~sd~ei~~Al~~---a~------------------------l~~~--I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1167 -CSIAENIIYGLDPS--SVTMAQVEEAARL---AN------------------------IHNF--IAELPEGFETRVGDR 1214 (1321)
T ss_dssp -EEHHHHHSSSSCTT--TSCHHHHHHHHHH---TT------------------------CHHH--HHTSTTTTCSEETTT
T ss_pred -ccHHHHHhccCCCC--CCCHHHHHHHHHH---hC------------------------ChHH--HHcCcCCCCCEecCC
Confidence 59999998863211 1111111111111 00 0111 125788899999975
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+ .+||||||||++|||||+.+|+||+||||||+||+.|...|.+.|++.. ++.|++++.|-.. +...||+|+||+
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAHRLs-Ti~~aD~I~Vld 1289 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAHRLN-TVMNADCIAVVS 1289 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECSSSS-TTTTCSEEEEES
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEeccCHH-HHHhCCEEEEEE
Confidence 4 5799999999999999999999999999999999999999999998753 3445555666554 456799999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|+|+++|+++++++
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999975
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.8e-34 Score=316.45 Aligned_cols=194 Identities=22% Similarity=0.313 Sum_probs=147.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999998765 99999998 4899999998777 49999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+. +... .. ....+. ++.. .++..++.+ ....++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~------------------~~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV------------------IKAC---------QLEEDISKF--AEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH------------------HHHT---------TCHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH------------------HHHh---------ChHHHHHhc--cccccchhcC-ccCcCC
Confidence 997 3211 00 000000 0000 011122222 2233455553 356799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +.+. .+++|+.++|+...+ ..||++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999964 4432 245566678887776 469999999999999
Q ss_pred EecChhhHH
Q 001154 388 YQGPRVSVL 396 (1136)
Q Consensus 388 ~~G~~~~~~ 396 (1136)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.98 E-value=2.1e-32 Score=362.41 Aligned_cols=212 Identities=26% Similarity=0.385 Sum_probs=171.3
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++.. .+.++|+||||+|+|||++||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 387 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDI 454 (1284)
T ss_dssp CEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEH
Confidence 57788887766321 23469999999999999999999999999999999999877 5689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++. ||+||+.|+.. +... +.++++++..++.+ -.+..++..
T Consensus 455 ~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~- 523 (1284)
T 3g5u_A 455 RTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGER- 523 (1284)
T ss_dssp GGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSS-
T ss_pred HhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhccccccccccCC-
Confidence 43 4566789999999998876 99999998631 1122 22445555544432 234445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+++.+.+++.++++. +|+|+|+++|+++ ....+|++++|+ +
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~-~ 599 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD-G 599 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS-S
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999998864 5999999999965 456799999997 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|++++.|+.
T Consensus 600 G~i~~~g~~ 608 (1284)
T 3g5u_A 600 GVIVEQGNH 608 (1284)
T ss_dssp SCCCCEECH
T ss_pred CEEEEECCH
Confidence 799999975
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2.8e-30 Score=315.75 Aligned_cols=191 Identities=24% Similarity=0.272 Sum_probs=161.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
.|+++|+.+++||+++|+|||||||||||++|+|.+.|. +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999876 899876 2469999999877788999998
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+.+..... + . ...+++.+++.+||.+.++..++ .|||
T Consensus 438 ~~~~~~~~-----~------~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L------N---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----H------H---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----C------C---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86521000 0 0 01236788999999887776664 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1136)
||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999987543 45566688999999999999999986 8889
Q ss_pred EecChhhHHH
Q 001154 388 YQGPRVSVLD 397 (1136)
Q Consensus 388 ~~G~~~~~~~ 397 (1136)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=3.6e-30 Score=311.94 Aligned_cols=191 Identities=24% Similarity=0.267 Sum_probs=159.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
.|+++|+.|++||+++|+|||||||||||++|+|.++|. +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 467777888999999999999999999999999998876 899875 2369999999877788999988
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+....... + . ....++.+++.+||.+..+..++ .|||
T Consensus 368 ~~~~~~~~-----~----------------~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L----------------N-----------------SNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----H----------------T-----------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----C----------------C-----------------HHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 75421000 0 0 01236778889999877776654 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1136)
||||||+||++|+.+|++|+|||||+|||..++..|.+.|+++++.. +.+|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999986543 45566688999999999999999986 7899
Q ss_pred EecChhhHHH
Q 001154 388 YQGPRVSVLD 397 (1136)
Q Consensus 388 ~~G~~~~~~~ 397 (1136)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=6.4e-30 Score=308.73 Aligned_cols=192 Identities=23% Similarity=0.259 Sum_probs=159.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+......+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999886 99999875 358999999776678999999
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+.+..... .. .....++++++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~~--~~-----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKDA--LS-----------------------------------TSSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSST--TC-----------------------------------TTSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhhc--cc-----------------------------------hhHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 97632100 00 001236778888999887776664 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1136)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999987643 55666789999999999999999986 6667
Q ss_pred EecChhhHH
Q 001154 388 YQGPRVSVL 396 (1136)
Q Consensus 388 ~~G~~~~~~ 396 (1136)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777766554
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-29 Score=306.91 Aligned_cols=193 Identities=23% Similarity=0.186 Sum_probs=160.1
Q ss_pred eeeeeceeEEEeCC-----eEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPS-----RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1136)
..+++|+|+.+++| |+++|+|||||||||||++|+|+++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 779999999999999999999999886 7752 1 2346899999976666
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
..||+|++....+ +.. .....++.+++.+||.+.++..++
T Consensus 427 ~~tv~e~~~~~~~--~~~------------------------------------~~~~~~~~~l~~l~l~~~~~~~~~-- 466 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQF------------------------------------LNPQFQTDVVKPLRIDDIIDQEVQ-- 466 (608)
T ss_dssp CSBHHHHHHHHCS--STT------------------------------------TSHHHHHHTHHHHTSTTTSSSBSS--
T ss_pred CccHHHHHHHHhh--ccc------------------------------------ccHHHHHHHHHHcCChhhhcCChh--
Confidence 7899998753211 000 001235678899999988776654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +.+|+.++|+.+++..++|+|++|+
T Consensus 467 ---~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 467 ---HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp ---SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 699999999999999999999999999999999999999999999986543 4556668999999999999999998
Q ss_pred C--CeEEEecChhhHHH
Q 001154 383 E--GQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~--G~iv~~G~~~~~~~ 397 (1136)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999998875
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=4.2e-31 Score=321.17 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=113.2
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhh
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~ 928 (1136)
++.+++|++++|+|+||||||||+++++|.... .|. +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 347899999999999999999999999985431 121 12455666531 12333221
Q ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 001154 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR-----A 1003 (1136)
Q Consensus 929 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~-----~ 1003 (1136)
+.. .. +++ +...++..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 11 112 2234555544432 2479999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCC----------cHHHHHhcCEEEEEec
Q 001154 1004 AAIVMRTVRNIVNTGRTIVCTIHQP----------SIDIFESFDELLFMKR 1044 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~~g~tii~~~H~~----------~~~~~~~~d~~~~l~~ 1044 (1136)
+..+.++++.+++.|.|||+|+|+. . .+...+|++++|.+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEE
Confidence 9999999999988899999999997 3 35567899999975
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=4.7e-29 Score=313.91 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=149.8
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC-CCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGL 917 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~l 917 (1136)
++++.+|+|+||++++|+++||+|||||||||||++|+| |.| +|.+... ...++|++|+. .+++.+
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT---TSCEEETTCCCCCCCTTS
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc---ceeEEEEcccccccccCC
Confidence 356789999999999999999999999999999999995 222 4443321 12368999974 677889
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
||.|++.+ ... .. ++.++++++.+++. +..+..+ ..|||||||||+|||+|+.+|+||||||||
T Consensus 512 tv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 512 SVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp BHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred cHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999975 111 11 35578899999994 5556554 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE-EeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~~ 1054 (1136)
+|||+.++..+++.|++ .|.|||++|||++ .+...+|++++|++ |+++ +.|+.
T Consensus 577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred cCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 99999999999999988 5999999999976 46678999999985 6775 67875
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.8e-29 Score=315.69 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=133.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHH---------------------hcccCCCCCc--ee---EEEEEEcCccC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---------------------DVLAGRKTGG--II---EGDIYISGYPK 895 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~L~g~~~~~--~~---~G~i~i~g~~~ 895 (1136)
..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4579999999999999999999999999997 5666543321 11 45677777654
Q ss_pred ChhcccceEEEeccCCCC-------------------CCCCcHHHHHHHHhhhcCCCcccHHHHH------HHHHHHHHH
Q 001154 896 RQETFARISGYCEQNDIH-------------------SPGLTVLESLLFSAWLRLPSEIELETQR------AFVEEVMEL 950 (1136)
Q Consensus 896 ~~~~~~~~~gyv~Q~~~~-------------------~~~ltv~e~l~~~~~lr~~~~~~~~~~~------~~v~~~l~~ 950 (1136)
... .++.+||++|...+ ++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 23345666664332 356899999987432221110 000000 011235777
Q ss_pred cCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001154 951 VELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1136)
Q Consensus 951 l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 1027 (1136)
++|.+. .+..+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+||||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888754 34443 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CcHHHHHhcCEEEEEe-----cCcEEEEeCCCC
Q 001154 1028 PSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1136)
Q Consensus 1028 ~~~~~~~~~d~~~~l~-----~gG~~~~~g~~~ 1055 (1136)
++ ....+|++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 65 456799999993 368999999864
No 108
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=4.5e-25 Score=275.35 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=92.2
Q ss_pred HHHHHHHhCCcc-cccccccCccCCCCChhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001154 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1136)
Q Consensus 282 ~~~vl~~lgL~~-~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p---~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~ 357 (1136)
+.++|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|+|||||+|||+.+...|++.|++++..
T Consensus 825 ~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 567899999976 455544 469999999999999999764 999999999999999999999999998753
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 001154 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1136)
+.+|++++|+.+++ ..+|+|++| .+|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45666688888876 689999999 789999999998875
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=2.2e-24 Score=271.83 Aligned_cols=109 Identities=22% Similarity=0.298 Sum_probs=92.0
Q ss_pred HHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001154 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1136)
Q Consensus 281 ~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p---~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~ 357 (1136)
++.++|+.+||... .+| +....|||||||||+||++|+.+| ++|+|||||+|||+.+...|++.|+++...
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-- 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-- 857 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 46788999999642 122 345579999999999999999865 799999999999999999999999998753
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 001154 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1136)
+.+||++.|+.+.+ ..+|+|++| ++|+|++.|+++++.
T Consensus 858 G~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 44566688988776 459999999 899999999999985
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=1.2e-24 Score=271.98 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCccc-ccccccCccCCCCChhhhhHHHHHHHHhCC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001154 281 VVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGP---ARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1136)
Q Consensus 281 ~~~~vl~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~al~~~---p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~ 356 (1136)
++.++|+.+||... .+.. +..|||||||||+||++|+.+ |++|+|||||+|||..+...|.+.|++++..
T Consensus 709 ~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~- 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA- 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 57889999999763 3443 456999999999999999996 7999999999999999999999999998753
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 001154 357 DGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 357 ~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1136)
+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 55666688999888 889999999 799999999998874
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=1.9e-24 Score=270.86 Aligned_cols=108 Identities=22% Similarity=0.256 Sum_probs=92.5
Q ss_pred HHHHHHHhCCcc-cccccccCccCCCCChhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001154 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1136)
Q Consensus 282 ~~~vl~~lgL~~-~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p---~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~ 357 (1136)
+..+|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|+|||||+|||+.+...|++.|++++..
T Consensus 843 ~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-- 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 567899999976 444444 469999999999999999864 999999999999999999999999998753
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 001154 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 397 (1136)
+.+|++++|+..++ ..+|+|++| .+|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 45666688988876 689999999 7899999999988754
No 112
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=2.2e-24 Score=255.09 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=139.4
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC------------------------------------ceeEE
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG------------------------------------GIIEG 886 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 886 (1136)
.+++++++.+.+| +++|+|||||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4688999999999 9999999999999999999553221 01258
Q ss_pred EEEEcCccCChhc---c-cceEEEeccCCCCCCCCcHHHHHHHHhhhc-----------------------CCCcc----
Q 001154 887 DIYISGYPKRQET---F-ARISGYCEQNDIHSPGLTVLESLLFSAWLR-----------------------LPSEI---- 935 (1136)
Q Consensus 887 ~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr-----------------------~~~~~---- 935 (1136)
.+.+||.+++... + ...+++++|++.++.. +..+...|--... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2348999998776543 4443333211100 00000
Q ss_pred ------------------------------cHHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 001154 936 ------------------------------ELETQRAFVEEVMELVELTSLS----------------GA---LIGL--- 963 (1136)
Q Consensus 936 ------------------------------~~~~~~~~v~~~l~~l~l~~~~----------------~~---~~~~--- 963 (1136)
........+++.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000112344455555543310 00 0110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001154 964 ---PGING-LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD 1037 (1136)
Q Consensus 964 ---~~~~~-LSgGqrqrl~ia~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d 1037 (1136)
..+.. |||||||||+||++|+.+| +||||||||+|||+.++..+.+.|+++. +|+|||+|||++. +...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 00112 7999999999999999999 9999999999999999999999999997 6999999999964 567899
Q ss_pred EEEEE----ecCcEEEEe
Q 001154 1038 ELLFM----KRGGELIYA 1051 (1136)
Q Consensus 1038 ~~~~l----~~gG~~~~~ 1051 (1136)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 64 666544
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-27 Score=279.56 Aligned_cols=195 Identities=17% Similarity=0.097 Sum_probs=146.8
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-E-EEEcCccCChhcccceEEEeccCCC---CCCCCcHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-D-IYISGYPKRQETFARISGYCEQNDI---HSPGLTVLE 921 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~ltv~e 921 (1136)
++|+++++|++++|+||||||||||+++|+|... +.+| + |+++|. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7999999999999999999999999999999876 4679 8 999983 2566899999874 445679999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE--LVANPSI----VFMDE- 994 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~a--L~~~p~i----llLDE- 994 (1136)
|+ |+........ ..+.+.++++.+++.+..+ ..+|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCcc-----hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 88 6543211100 0122345666677766554 24799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--H---HHHHhcCE-----EEEEecCcEEEEeCCCCCc----hhH
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS--I---DIFESFDE-----LLFMKRGGELIYAGPLGSK----SCE 1060 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--~---~~~~~~d~-----~~~l~~gG~~~~~g~~~~~----~~~ 1060 (1136)
||++||+. ...+.+.+++ .+.|+|+++|+.+ . .+...+|+ +++|.+.|+++ .|+.... ...
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~ 343 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTS 343 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHH
Confidence 99999999 5555555554 3889999999976 3 34467899 99998346677 7765322 123
Q ss_pred HHHHHHh
Q 001154 1061 LIKYFEA 1067 (1136)
Q Consensus 1061 ~~~~~~~ 1067 (1136)
+.+||..
T Consensus 344 i~~~f~g 350 (460)
T 2npi_A 344 IREYFYG 350 (460)
T ss_dssp HHHHHHC
T ss_pred HHHHhCC
Confidence 5567754
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-26 Score=272.57 Aligned_cols=184 Identities=12% Similarity=0.048 Sum_probs=141.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee-E-EEECCccCCCCCCCceEEEEeccCC---CCCCCCHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-K-ITYNGHGFKEFVPPRTSAYVSQQDW---QVAEMTVR 227 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV~ 227 (1136)
++|+.+++|++++|+||||||||||+++|+|.+.+. +| + |.++|. +++.++|++|+.. +...+||+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 799999999999999999999999999999998654 89 8 999982 3567899999873 45568999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+ |+......... ..++..+++.+||++..+ ...|
T Consensus 201 eni-~~~~~~~~~~~------------------------------------~~~~~~ll~~~gl~~~~~-------~~~L 236 (460)
T 2npi_A 201 LPT-WGQSLTSGATL------------------------------------LHNKQPMVKNFGLERINE-------NKDL 236 (460)
T ss_dssp CTT-CSCBCBSSCCS------------------------------------SCCBCCEECCCCSSSGGG-------CHHH
T ss_pred hhh-cccccccCcch------------------------------------HHHHHHHHHHhCCCcccc-------hhhh
Confidence 999 75432100000 001223455678876554 2469
Q ss_pred ChhhhhHHHHHHH--HhCCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh------HHHhh
Q 001154 308 SGGQKKRLTTGEL--LVGPARV----LFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP------EAYEL 374 (1136)
Q Consensus 308 SGGqkkRvsia~a--l~~~p~v----lllDE-ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~------~~~~~ 374 (1136)
||||||||++|++ |+.+|++ |+||| ||+|||+. ...|.+.+++ .+.++|+++ |+.. ++..+
T Consensus 237 SgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVt-h~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 237 YLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVL-CSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEE-CCSSCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEE-ccCchhhhHHHHHHh
Confidence 9999999999999 9999999 99999 99999999 5555555543 345655544 4444 66789
Q ss_pred cCe-----EEEEc-CCeEEEecChhhHH
Q 001154 375 FDD-----VILLS-EGQIVYQGPRVSVL 396 (1136)
Q Consensus 375 ~D~-----vilL~-~G~iv~~G~~~~~~ 396 (1136)
+|+ |++|. +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99887653
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=4e-23 Score=244.27 Aligned_cols=236 Identities=13% Similarity=0.103 Sum_probs=148.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC-----------------------------------ccee
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-----------------------------------LQVS 192 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~-----------------------------------~~~~ 192 (1136)
..+++++++.+.+| +++|+|||||||||||++|++.+... ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999998887531 0126
Q ss_pred eEEEECCccCCCCC----CCceEEEEeccCCCCCCCCHHHHHHHhhhhcCC-CCc----hhhhHHHHHHHHHhCCCCCc-
Q 001154 193 GKITYNGHGFKEFV----PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV-GSK----YDMITELARREKIAGIKPDE- 262 (1136)
Q Consensus 193 G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-~~~----~~~~~~~~~~e~~~~~~~~~- 262 (1136)
|++.+||.+++... ....+++++|++.++. .+..+...|.-..... ... +....... .+...-.....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~-~~~~~l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAV-SRLERLQASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHC------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence 88999998875321 1234899999976544 3666555543221100 000 00000000 00000000000
Q ss_pred ----------hhHHHHHHhh-----------ccCcchhHHHHHHHHHhCCcccc----------------cc---cccC-
Q 001154 263 ----------DLDIFMKSFA-----------LGGQKTSLVVEYIMKILGLDTCA----------------DT---LVGD- 301 (1136)
Q Consensus 263 ----------d~~~~~~~~~-----------~~~~~~~~~~~~vl~~lgL~~~~----------------dt---~vg~- 301 (1136)
.++.+.+.+. .........+...++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0000000000 00111234466777778775410 00 1111
Q ss_pred -----ccCCC-CChhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHh
Q 001154 302 -----EMLKG-ISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1136)
Q Consensus 302 -----~~~~~-LSGGqkkRvsia~al~~~p--~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1136)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ + .+|++++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~-~~vi~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-RQVLVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--T-SEEEEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--C-CEEEEEeCcH-HHHh
Confidence 11222 6999999999999999999 99999999999999999999999999862 3 4455577776 5668
Q ss_pred hcCeEEEE----cCCeEEEec
Q 001154 374 LFDDVILL----SEGQIVYQG 390 (1136)
Q Consensus 374 ~~D~vilL----~~G~iv~~G 390 (1136)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=5.1e-26 Score=241.85 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=98.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+|| ++||++||+||||||||||+++|+|. . +.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 445678886 89999999999999999999999998 5 34565522101111123456799999976
Q ss_pred HHHH-HHHh----hhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 920 LESL-LFSA----WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 920 ~e~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+||+ .+.. .+.... . .+.++++++. + | |||||++|||||+.+|+||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~~--~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMV--E----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTTTS--C----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhc--c----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2211 011000 0 1223444442 1 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
||+| ++..+++.|+++ ++|+||| +|||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888899999988 6689999 999965
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=6e-22 Score=229.08 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 966 INGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
+.+|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|.|||+|||+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999878999999999965 46789999
Q ss_pred EEEecCcEEEE
Q 001154 1040 LFMKRGGELIY 1050 (1136)
Q Consensus 1040 ~~l~~gG~~~~ 1050 (1136)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 77753
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=2.3e-23 Score=215.14 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=103.5
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCC-CCcHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP-GLTVLESLLF 925 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~-~ltv~e~l~~ 925 (1136)
||||++++||+++|+||||||||||++++.+-.. .+++ .. ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----DF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----HH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----HH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 11 1267777643110 011112111
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR--- 1002 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~--- 1002 (1136)
..... ....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~~-~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVSK-RLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHHH-HHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHHH-HHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11111 2223444333322 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCE
Q 001154 1003 -------------AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 1003 -------------~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
....+++.|+++.++|.|+|++||+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668899999888777999999999964 3444443
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=8.3e-22 Score=224.61 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE--
Q 001154 966 INGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL-- 1039 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~-- 1039 (1136)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|||+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 5789999999999999999999999999984 5899999999964 56789986
Q ss_pred EEEecCcEEEEeCCCC
Q 001154 1040 LFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1040 ~~l~~gG~~~~~g~~~ 1055 (1136)
++|.+|...+......
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 7888777777666553
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.84 E-value=8.5e-21 Score=219.47 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=72.9
Q ss_pred ccCCCCChhhhhHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 001154 302 EMLKGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~------~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
..+..|||||||||+||+||+ .+|++|||||||+|||+.++.++++.|+++... +.+|+.++|+... ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~--g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL--NKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS--SSEEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhC
Confidence 345679999999999999999 799999999999999999999999999988643 4555667788766 7889
Q ss_pred CeEEEEcCCeEEE
Q 001154 376 DDVILLSEGQIVY 388 (1136)
Q Consensus 376 D~vilL~~G~iv~ 388 (1136)
|++++|.+|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.84 E-value=3.4e-23 Score=220.07 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=95.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+.+|+|+ ++|++++|+|||||||||||++|+|. .|+ +|+|............++.++|++|++ +
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 4688886 89999999999999999999999999 764 777732101111112346799999976 5
Q ss_pred HHH-HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 228 ETL-DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
||+ .+..... + ....... ...++.+++. |
T Consensus 77 enl~~~~~~~~------~---------~~~~~~~------------------~~~~~~~l~~-g---------------- 106 (208)
T 3b85_A 77 EKIDPYLRPLH------D---------ALRDMVE------------------PEVIPKLMEA-G---------------- 106 (208)
T ss_dssp ---CTTTHHHH------H---------HHTTTSC------------------TTHHHHHHHT-T----------------
T ss_pred HHHHHHHHHHH------H---------HHHHhcc------------------HHHHHHHHHh-C----------------
Confidence 666 3321000 0 0000000 1124444443 2
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1136)
+ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ . .+++|+ ++|+..++
T Consensus 107 l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899999876 3 356666 77877655
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=4.6e-23 Score=230.17 Aligned_cols=158 Identities=13% Similarity=0.213 Sum_probs=118.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999987 6887 357788887665 5888
Q ss_pred H-HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 228 E-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
| ||.|.... . + .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------~---~--------------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------T---H--------------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------C---H--------------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------c---H--------------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77663110 0 0 022233333 444444 3 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||| |||++.+|+||+ ||+||+.+...|.. + +|. ..+...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999888752 1 222 2345678999 9999999
Q ss_pred EEecChhhHHHHHHhc
Q 001154 387 VYQGPRVSVLDFFASM 402 (1136)
Q Consensus 387 v~~G~~~~~~~~F~~~ 402 (1136)
++.|+.+++..+|.++
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999987666543
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=4e-23 Score=240.16 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=134.5
Q ss_pred eEEEeeeEEEEECCc--------------------EEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhccc
Q 001154 842 LQLLVNVTGAFRPGV--------------------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 901 (1136)
..+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 357889999999999 999999999999999999999876 35789988886542
Q ss_pred ceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHH
Q 001154 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTI 979 (1136)
Q Consensus 902 ~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~i 979 (1136)
+ .+|++|++ .++.+|+.|++.++. + +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889988875532 1 12357888888876543211 28999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCcH-HHHHhcCEE
Q 001154 980 AVELVA----------NPSIVFMDEPTSGLDARAAAIVMRTVRNIV-----NT----GRTIVCTIHQPSI-DIFESFDEL 1039 (1136)
Q Consensus 980 a~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~l~-----~~----g~tii~~~H~~~~-~~~~~~d~~ 1039 (1136)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+- ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 32 3678899998762 256667777
Q ss_pred E
Q 001154 1040 L 1040 (1136)
Q Consensus 1040 ~ 1040 (1136)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=8.2e-24 Score=225.63 Aligned_cols=185 Identities=15% Similarity=0.056 Sum_probs=116.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+...+++| .++++||++||+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHh
Confidence 34557777 6899999999999999999999999999764 233333333332211 224568999999877777788
Q ss_pred HHHHHHHhhhcC---CCcccHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 920 LESLLFSAWLRL---PSEIELETQRAFVEEV------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 920 ~e~l~~~~~lr~---~~~~~~~~~~~~v~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+++.+...... ....+..+.++.+++. ++.+++...++... ..|| +|+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHH
Confidence 777642211110 0012233333444444 33334433333321 2466 889999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 991 FMDEPTSGL----DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 991 lLDEPTsgL----D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
+|||||+|+ |+..+..+++.++++.+ .|.|||+++||++ ++...+|++++|.+.|
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 999999998 78899999999999974 5899999999986 5778899999986544
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=1.5e-22 Score=235.31 Aligned_cols=172 Identities=10% Similarity=0.097 Sum_probs=132.8
Q ss_pred eeeeeceeEEEeCCe--------------------EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC
Q 001154 148 LTILDDLSGIIRPSR--------------------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~ 207 (1136)
..+|++||+.+++|+ +++|+||||||||||+|+|+|++.+. +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 568999999999999 99999999999999999999998876 899999987643
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHH
Q 001154 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 287 (1136)
Q Consensus 208 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~ 287 (1136)
+ .+|++|++ .++.+|+.||+.++.. ...++++++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899986 4778899888744210 001567788
Q ss_pred HhCCcccccccccCccCCCCChh--hhhHHHHHHHHhC----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 001154 288 ILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG----------PARVLFMDEISNGLDSSTTYQIIKYLKHSTR- 354 (1136)
Q Consensus 288 ~lgL~~~~dt~vg~~~~~~LSGG--qkkRvsia~al~~----------~p~vlllDEptsgLD~~t~~~i~~~l~~~~~- 354 (1136)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887642 22 12 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---cc---CCeEEEEEecChhH--HHhhcCeEE
Q 001154 355 ---AL---DGTTVISLLQPAPE--AYELFDDVI 379 (1136)
Q Consensus 355 ---~~---~~t~ii~~~q~~~~--~~~~~D~vi 379 (1136)
.. ..++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555555555554 666666663
No 126
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=8e-21 Score=196.11 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=55.9
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHhccCCeEEEEEecChh
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS----------------TTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~----------------t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1136)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. +.+++.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCcEEEEeCCHH
Confidence 36999999999999999999999999999999999 668888988887654 445556778888
Q ss_pred HHHh
Q 001154 370 EAYE 373 (1136)
Q Consensus 370 ~~~~ 373 (1136)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7743
No 127
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=4.7e-21 Score=198.76 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=98.9
Q ss_pred EEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~ 933 (1136)
.++|+||||||||||+++|+|... |.++|++... ...++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 589999999999999999999653 2223322111 12356789999975 222222 1 11000
Q ss_pred cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 001154 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE-----LVANPSIVFMDE--PTSGLDARAAAI 1006 (1136)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~a-----L~~~p~illLDE--PTsgLD~~~~~~ 1006 (1136)
.-....+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 ------------------~~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 ------------------TSKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------CCSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------Ccccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 000122222 24699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 1007 VMRTVRNIVNTGRTIVCTIH---QPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~~~H---~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 8888865 4777888886 543 35556676 3567766443
No 128
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=3.4e-20 Score=211.32 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=67.1
Q ss_pred CCCCChhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE-
Q 001154 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV- 378 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~----~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v- 378 (1136)
+..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|+++.+ +++++.++|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~vi~~tH~-~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFIVITHN-KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEEEECCC-TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEECC-HHHHhhCceEE
Confidence 4579999999999999996 78999999999999999999999999998742 3455556676 4678899987
Q ss_pred -EEEcCCeEE
Q 001154 379 -ILLSEGQIV 387 (1136)
Q Consensus 379 -ilL~~G~iv 387 (1136)
++|.+|...
T Consensus 293 ~v~~~~g~s~ 302 (322)
T 1e69_A 293 GVTMVNGVSA 302 (322)
T ss_dssp EEEESSSCEE
T ss_pred EEEEeCCEEE
Confidence 888888654
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.80 E-value=7.4e-21 Score=197.30 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=101.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1136)
.++|+||||||||||+++|+|.+. ....|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 23344321 1111102345789999975 222222 10 00
Q ss_pred hhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHH--
Q 001154 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL-- 320 (1136)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~a-- 320 (1136)
+... +..++ +....||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~~-~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLVG-SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEET-TEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--ccccc-ccccCcCHHHHHHHHHHhhcc
Confidence 0000 01121 2344699999999999996
Q ss_pred ---HhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe--cChhHHHhhcCeEEEEcCCeEEE
Q 001154 321 ---LVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 321 ---l~~~p~vlllDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999988874 2445677664 788888889998 5566665
No 130
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.77 E-value=7.3e-21 Score=210.53 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=96.7
Q ss_pred EEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCccc
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~ 936 (1136)
.+||+||||||||||+++|+|... +.+|+|.++|.++.....++.+||++|++.+++.+||.|++.|+....... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~--~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN--C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--H
Confidence 479999999999999999999766 468999999987755555678999999999999999999998875433211 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 937 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 937 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
. +.+.+.++ ....+... ..||||||||++|||+++. ++||||||+|||+.. .++++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11222222 22233332 3699999999999999875 999999999999886 455566655
Q ss_pred CCCEEEEEecCCc
Q 001154 1017 TGRTIVCTIHQPS 1029 (1136)
Q Consensus 1017 ~g~tii~~~H~~~ 1029 (1136)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999643
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=2e-20 Score=210.05 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=116.5
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cc--cceEEEeccCCC-CCC
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSP 915 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 915 (1136)
+++|+.+++|++++|+||||||||||+++|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 46788889999999999999999999999999755 3469999999875321 12 245899999988 888
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMD 993 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLD 993 (1136)
.+|++|++.+... +. .+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 169 ~~~v~e~l~~~~~-~~-~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EG-YD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHH-TT-CS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHH-cC-Cc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 8999999987532 11 00 12455566655544443 3689 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~ 1027 (1136)
||+|||+... ++++. ..|.|+|++||.
T Consensus 229 -ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 229 -GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred -CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9999998754 24444 358999999993
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=3.3e-20 Score=208.33 Aligned_cols=174 Identities=19% Similarity=0.193 Sum_probs=126.4
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-------C--CceEEEEeccCC-C
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P--PRTSAYVSQQDW-Q 220 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 220 (1136)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999765 899999998764321 1 235899999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+|++.++.. .+ ++ ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~-~~----~d--------------------------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EG----YD--------------------------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHH-TT----CS--------------------------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHH-cC----Cc--------------------------------------chHHhcCCCCcchhHHHH
Confidence 889999999987532 10 00 012334566655554443
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEec---------Chh
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ---------PAP 369 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~--vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q---------~~~ 369 (1136)
.|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.++ ++| ...
T Consensus 204 -----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 204 -----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp -----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred -----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 489 999999999999999 99999 99999998542 3343333445555 555 223
Q ss_pred HHHhhcCeEEEEcCCeE
Q 001154 370 EAYELFDDVILLSEGQI 386 (1136)
Q Consensus 370 ~~~~~~D~vilL~~G~i 386 (1136)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 34456678888888864
No 133
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.75 E-value=1.3e-22 Score=226.49 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=115.8
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH-
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE- 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e- 921 (1136)
.+|++||++|++|+++||+||||||||||+++|+|.. +|+| ++|++|++.++. .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHHH
Confidence 5789999999999999999999999999999999975 3665 356788777665 47776
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
|+.|.. +... .+++.++.+ |.+..+ +..|||||||| ||||+.+|+||| ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 776531 1111 234455543 332222 24799999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHHHHHhc
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~~~~ 1068 (1136)
.+...++. ++|+++ .++.+|++ +|+ +|++++.|+. .++..+|..+
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH----HHHHHHHHHH
Confidence 99888762 189875 45789999 987 5799988874 3555566654
No 134
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.75 E-value=6.4e-20 Score=202.96 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=89.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1136)
.++|+||||||||||+|+|+|...+. +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999876 89999999887554455789999999999999999999988654321100
Q ss_pred hhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHh
Q 001154 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322 (1136)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~ 322 (1136)
.+. +...+. ....+... ..||||||||+++||+++
T Consensus 80 ~~~------------------------------------i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEP------------------------------------IEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHH------------------------------------HHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred HHH------------------------------------HHHHHH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 000 111111 11122222 359999999999999987
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecCh
Q 001154 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1136)
. ++|||||++|||+.. .+.++.+.+. .++|+ +.+..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~-Vi~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIP-VIAKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEE-EETTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEE-EEecc
Confidence 5 999999999999987 3444444432 45554 44444
No 135
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=2.2e-22 Score=216.18 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=98.2
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCCCCCc
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
.-|+||||++++|+++||+||||||||||+++|+|..+ |.|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 46889999999999999999999999999999999652 67777 654321 113456899999876554332
Q ss_pred H-HHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEE
Q 001154 919 V-LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI-----AVELVANPSIVF 991 (1136)
Q Consensus 919 v-~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i-----a~aL~~~p~ill 991 (1136)
. .+++.+ ..+... ...+ ...++++++...+. +.+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111110 011110 0111 12356666654322 111 2689999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIV 1015 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1136)
|||||+++|..+...+.+.+.+..
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999888764
No 136
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.73 E-value=1.2e-19 Score=206.59 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=102.7
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+... ...++.++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 68899999999999999999999999999999998763 57999999864210 00111222211
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+ |||+||++||+||..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
..+++.|+.+...+.|+|+|+|+++ ....+|++++|.+|
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 2356777776543458999999987 56789999999865
No 137
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.73 E-value=1.2e-19 Score=207.32 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=117.3
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cc--cceEEEeccCCC-CCCC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSPG 916 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~~ 916 (1136)
++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 5777788999999999999999999999999755 3469999999875321 12 346899999988 8888
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDE 994 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDE 994 (1136)
.|++|++.+... + ..+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 227 ~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 227 TVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 999999987532 1 101 12445566665554443 3688 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~ 1027 (1136)
||+|||+.... +.+.+ .|.|+|++||.
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 58999999994
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.73 E-value=1.5e-21 Score=209.68 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=98.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1136)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+..... ..+.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88988 77654322 23568999998765554
Q ss_pred CCH-HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 224 MTV-RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
++. .+++.+. ... ...|.. ....++++++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~--~~~~g~--------------------------------~~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYA--NNFYGT--------------------------------LKSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EET--TEEEEE--------------------------------EHHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hcc--cccCCC--------------------------------cHHHHHHHHhCCCc-----EEEE--
Confidence 321 1111110 000 000000 01123444443221 1221
Q ss_pred cCCCCChhhhhHHHH-----HHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 303 MLKGISGGQKKRLTT-----GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsi-----a~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.....
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3599999999999 8899999999999999999999999999988887644
No 139
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=1.1e-17 Score=191.73 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=74.6
Q ss_pred CccCC-CCChhhhhHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 301 DEMLK-GISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 301 ~~~~~-~LSGGqkkRvsia~al~---------~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44555 69999999999999999 999999999999999999999999999864 2 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 001154 371 AYELFDDVILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 371 ~~~~~D~vilL~~G~iv~~G~~~~~ 395 (1136)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
No 140
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=2.4e-17 Score=189.10 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=68.5
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 966 INGLSTEQRK------RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 966 ~~~LSgGqrq------rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
+..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+.|.|||++||++. +...+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 3579999999 677788888899999999999999999999999999998777899999999954 57889999
Q ss_pred EEEe
Q 001154 1040 LFMK 1043 (1136)
Q Consensus 1040 ~~l~ 1043 (1136)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=3.1e-19 Score=203.94 Aligned_cols=173 Identities=19% Similarity=0.200 Sum_probs=126.7
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---------CCceEEEEeccCC-CC
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---------PPRTSAYVSQQDW-QV 221 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 221 (1136)
.++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999765 899999998764321 1235899999987 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~----~d--------------------------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CS--------------------------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-C----CH--------------------------------------HHHHHhcCCChhhhhHH--
Confidence 899999999875321 0 00 01223456665544444
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC---------hhH
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP---------APE 370 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~--vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~ 370 (1136)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 3489 999999999999999 99999 99999988653 3333333445555 5552 233
Q ss_pred HHhhcCeEEEEcCCeE
Q 001154 371 AYELFDDVILLSEGQI 386 (1136)
Q Consensus 371 ~~~~~D~vilL~~G~i 386 (1136)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888887763
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.72 E-value=8.3e-21 Score=202.36 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=112.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ...+.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 467888 68999999999999999999999999999852 22222222222111 1235689999998878888888
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHH------HHHhCCcccccccccC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI------MKILGLDTCADTLVGD 301 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v------l~~lgL~~~~dt~vg~ 301 (1136)
+++.+.....+....|..... . ...++++. ++.+|+...++..+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~-~---------------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ-P---------------------------VRAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH-H---------------------------HHHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCCcHH-H---------------------------HHHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 876432211110000000000 0 00112222 33344443333332
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL----DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgL----D~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
+.|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+ .+++.++|+.+++..++|+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g-~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD-FDKVVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG-SSEEEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc-CcEEEECCCHHHHHHHHHH
Confidence 3466 899999999999999998 78899999999999875434 4555688999999999999
Q ss_pred EEEEc
Q 001154 378 VILLS 382 (1136)
Q Consensus 378 vilL~ 382 (1136)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 143
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1.2e-19 Score=213.80 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=140.9
Q ss_pred ccccccccccC-ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc---cCCh--------
Q 001154 830 VELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-------- 897 (1136)
Q Consensus 830 ~~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-------- 897 (1136)
++.++.++.++ +..+|+++ +.+.+|++++|+||||||||||+++|+|... +..|.|.++|. +...
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccc
Confidence 34445555554 56799999 9999999999999999999999999999876 45899999997 3322
Q ss_pred hcccceEEEeccC-CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 001154 898 ETFARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1136)
Q Consensus 898 ~~~~~~~gyv~Q~-~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 976 (1136)
...++.++|++|+ +..++.+|+.+++.+.+...... . .++ ..+.+. ...||+|| ||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~---~~v------~~~ld~------l~~lS~g~-qr 265 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------G---QHV------LLIMDS------LTRYAMAQ-RE 265 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------T---CEE------EEEEEC------HHHHHHHH-HH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------C---CCH------HHHHHh------HHHHHHHH-HH
Confidence 2356789999995 45567789999988755321000 0 000 111121 24699999 99
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---T-GR-----TIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 977 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
++|| +.+|++ |+|||+.....+.+.++++.+ + |. ||++++||++ ...+|++++|. +|+
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~ 332 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGH 332 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcE
Confidence 9999 888887 999999999999999999865 3 64 9999999987 35689999997 489
Q ss_pred EEEeCCC
Q 001154 1048 LIYAGPL 1054 (1136)
Q Consensus 1048 ~~~~g~~ 1054 (1136)
++..|++
T Consensus 333 Ivl~~~~ 339 (438)
T 2dpy_A 333 IVLSRRL 339 (438)
T ss_dssp EEECHHH
T ss_pred EEEeCCH
Confidence 9988753
No 144
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.71 E-value=2.2e-17 Score=189.06 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCE
Q 001154 968 GLSTEQRKRLTIAVELV---------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998863 799999994 3 2 7899
Q ss_pred EEEEecCcEEEEeCCCC
Q 001154 1039 LLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1039 ~~~l~~gG~~~~~g~~~ 1055 (1136)
+++|. +|+++..|+..
T Consensus 337 i~~l~-~G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQ-AGRFTPVADEE 352 (359)
T ss_dssp EEEEE-TTEEEECCCTT
T ss_pred EEEEE-CCEEEecCCHH
Confidence 99998 57999988764
No 145
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.70 E-value=4.9e-19 Score=199.73 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=97.1
Q ss_pred ceeEE-EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 001154 153 DLSGI-IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 153 ~vs~~-i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|++.. +++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45443 7999999999999999999999999999763 332 368999999998888 9999986
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
+... .+.... .....+..+|+.++ ....++.+ ..|||||
T Consensus 143 ~~~~-~g~~~~----------------------------------~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES----------------------------------YNRRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG----------------------------------BCHHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH----------------------------------HHHHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 5211 111000 00123556677777 44344444 3699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCH
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDS 339 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~ 339 (1136)
+||+++|++++.+|+||+||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 146
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.69 E-value=2.9e-19 Score=210.47 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=137.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc---cCCCC--------CCCceEEEEec
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEF--------VPPRTSAYVSQ 216 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~---~~~~~--------~~~~~~~yv~Q 216 (1136)
..+|+++ +.+.+|++++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++|++|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 5699999 999999999999999999999999999998876 899999998 44321 12467999999
Q ss_pred c-CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccc
Q 001154 217 Q-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1136)
Q Consensus 217 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~ 295 (1136)
+ +..++.+||.+|+.+.++.... . ..++ ....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~--------------~------~~~v---------------------------~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRD--------------R------GQHV---------------------------LLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT--------------T------TCEE---------------------------EEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------------C------CCCH---------------------------HHHH
Confidence 5 5567788999999875432100 0 0000 0001
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc--cCCe-----EEEEEecCh
Q 001154 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGT-----TVISLLQPA 368 (1136)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~--~~~t-----~ii~~~q~~ 368 (1136)
| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.+.++.+. .+++ +|+...|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 123599999 999999 888887 9999999999999999887542 1243 666677877
Q ss_pred hHHHhhcCeEEEEcCCeEEEecChhhH
Q 001154 369 PEAYELFDDVILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 369 ~~~~~~~D~vilL~~G~iv~~G~~~~~ 395 (1136)
. ...+|++++|.+|+++..|+..++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999987654
No 147
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=3.4e-18 Score=192.56 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=114.0
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-EEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
.+|+++++.+++|++++|+||||||||||++.|+|.... ..| .|.+.+.......+.+.+.++.|... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 457899999999999999999999999999999996431 235 55443332222223333333333221 22333
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ-RKRLTIAVELVANPSIVFMDEPTS--- 997 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqrl~ia~aL~~~p~illLDEPTs--- 997 (1136)
++.... ....+..+.++++++...+. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333211 11111222334443222221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-H--------------------HHHHhcCEEEEEecC
Q 001154 998 G---LDA-RAAAIVMRTVRNIVNT-GRTIVCTIHQPS-I--------------------DIFESFDELLFMKRG 1045 (1136)
Q Consensus 998 g---LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~-~--------------------~~~~~~d~~~~l~~g 1045 (1136)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6778899999999764 999999999952 1 456789999999864
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.67 E-value=7.2e-18 Score=192.01 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=99.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
+++++|+.+++|++++|+|||||||||||++|+|.+++. +|.|+++|.+ +.. .+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~~----- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKHH----- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSSC-----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------cccc-----
Confidence 799999999999999999999999999999999999876 8999999853 110 0000
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+ .. + ..+ .+ |
T Consensus 216 -----~-----~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 216 -----K-----NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp -----S-----SE----------------------------------------------E-------EEE-----CB--T
T ss_pred -----h-----hE----------------------------------------------E-------EEE-----eC--C
Confidence 0 00 0 000 01 8
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||+||++||+||..+|++++|||||+. ++.+.|+.+.. +++++++++|... +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~--g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS--GHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT--TCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc--CCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566766542 4444444555544 7888999999988753
No 149
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.66 E-value=8.7e-16 Score=176.06 Aligned_cols=77 Identities=27% Similarity=0.335 Sum_probs=65.6
Q ss_pred cCCCCChhhhh------HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 001154 303 MLKGISGGQKK------RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1136)
Q Consensus 303 ~~~~LSGGqkk------Rvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1136)
.+..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++... +. +|+.++|+ .++.+.||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~-~vi~~sH~-~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IP-QVILVSHD-EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SS-EEEEEESC-GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC-EEEEEECh-HHHHHhCC
Confidence 45679999999 678889999999999999999999999999999999987653 44 45556777 56889999
Q ss_pred eEEEEc
Q 001154 377 DVILLS 382 (1136)
Q Consensus 377 ~vilL~ 382 (1136)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 150
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.65 E-value=3.2e-16 Score=156.68 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 966 INGLSTEQRKRLTIA------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia------~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
+..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.+.|+|||++||++. +...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEE
Confidence 457999999999886 8999999999999999999999999999999998777999999999963 56789999
Q ss_pred EEEe
Q 001154 1040 LFMK 1043 (1136)
Q Consensus 1040 ~~l~ 1043 (1136)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 151
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.65 E-value=3.5e-17 Score=179.04 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=102.9
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
.+++|+|+|+.+++|++++|+||||||||||+++|+|.++ .+.++ ...+.++|++|++ +++.+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4569999999999999999999999999999999999873 22233 1245789999996 5778999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.|++.+.......... + ..+ ...+...|+.+ .+..+.. ...
T Consensus 76 ~~~~~~~~~~~~~~~~-~----------------~~~---------------~~~~~~~L~~l--~~~~~~~-----~~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP-D----------------AFD---------------NDLMHRTLKNI--VEGKTVE-----VPT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSG-G----------------GBC---------------HHHHHHHHHHH--HTTCCEE-----ECC
T ss_pred hHhhhhhccCCCCCCc-c----------------ccc---------------HHHHHHHHHHH--HCCCCee-----ccc
Confidence 9998775332111000 0 000 01122333332 3333333 346
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHH-hhcCeEEEEcCCe
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY-ELFDDVILLSEGQ 385 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~-~~~D~vilL~~G~ 385 (1136)
+|+||+||+.+ ++++.+|++++||||...+|.. +..+ . +.+|+..+|+...+. .+++++ .+|+
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99999999988 5888999999999998888764 1211 2 344554555544443 334444 5564
Q ss_pred EEEecChhhHHHH
Q 001154 386 IVYQGPRVSVLDF 398 (1136)
Q Consensus 386 iv~~G~~~~~~~~ 398 (1136)
+.+++...
T Consensus 181 -----~~e~~~~~ 188 (245)
T 2jeo_A 181 -----DLEQILTQ 188 (245)
T ss_dssp -----CHHHHHHH
T ss_pred -----CHHHHHHH
Confidence 45666543
No 152
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.63 E-value=4.1e-17 Score=183.65 Aligned_cols=186 Identities=15% Similarity=0.067 Sum_probs=109.7
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee-EEEECCccCCCCCCCceEEEEeccCCCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1136)
...+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 456899999999999999999999999999999999998653 46 55443321110000000011111000 01
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
+.+++... . +...+....++.+++..++. ..+ ...
T Consensus 94 ~~~~l~~~--------------~------------------------~~~~~~~~~~~~~l~~~~l~-i~~------~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------I------------------------IENGKFDQWFDELFGNDTFH-LYD------SFA 128 (296)
T ss_dssp GCHHHHHH--------------H------------------------HHHTHHHHHHHHHHSSSCEE-EEC------CCC
T ss_pred hccccccC--------------C------------------------CCHHHHHHHHHHHhccCCEE-EEC------CCC
Confidence 11111100 0 00001112233333322221 111 113
Q ss_pred CCChhh-hhHHHHHHHHhCCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHhccCCeEEEEEecCh--h------
Q 001154 306 GISGGQ-KKRLTTGELLVGPARVLFMDEISN---G---LDS-STTYQIIKYLKHSTRALDGTTVISLLQPA--P------ 369 (1136)
Q Consensus 306 ~LSGGq-kkRvsia~al~~~p~vlllDEpts---g---LD~-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--~------ 369 (1136)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 588888 67777 999999999999999999 5 455 66788999999998765555554 55663 3
Q ss_pred --------------HHHhhcCeEEEEcCCeE
Q 001154 370 --------------EAYELFDDVILLSEGQI 386 (1136)
Q Consensus 370 --------------~~~~~~D~vilL~~G~i 386 (1136)
.+..+||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.63 E-value=4.7e-16 Score=188.44 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred cCCCC-ChhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 303 MLKGI-SGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 303 ~~~~L-SGGqkkRvsia~al~~~p--~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ + .+|+.++|... +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~-~~vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-RQVLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--H-SEEEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHH-HHHhCCEEE
Confidence 34567 999999999999999999 99999999999999999999999999875 3 45555777755 556799999
Q ss_pred EEcCC
Q 001154 380 LLSEG 384 (1136)
Q Consensus 380 lL~~G 384 (1136)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
No 154
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=7.9e-18 Score=184.14 Aligned_cols=155 Identities=10% Similarity=-0.008 Sum_probs=97.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 5667999999999999999999999999999999999853 222222 2356789999985 6678999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
.+++.+......... +.....+.+.+.++.+ .+..+.. ...||+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876532211111 1111112233444432 2222222 24799999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~ 1027 (1136)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 753 2222 37899999996
No 155
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.63 E-value=2.9e-17 Score=211.03 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=113.5
Q ss_pred CceEEEeeeEEEEEC-------CcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEE-EeccCC
Q 001154 840 DRLQLLVNVTGAFRP-------GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG-YCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~ 911 (1136)
++..+++||++.+.+ |++++|+|||||||||||++| |.... .+ .+| ||||+.
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~a-qiG~~Vpq~~ 826 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MA-QMGCYVPAEV 826 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HH-TTTCCEESSE
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------Hh-heeEEeccCc
Confidence 345789999999987 999999999999999999999 86431 12 244 999975
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
. .+|+.|++.. + +++.+.... +.+.+|+|+++ +++|++++.+|+++|
T Consensus 827 ~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 827 C---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp E---EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred C---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 3 4455554421 1 111111100 12357887765 999999999999999
Q ss_pred EeCCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEE
Q 001154 992 MDEPTSGLDARA-AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1136)
Q Consensus 992 LDEPTsgLD~~~-~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~ 1049 (1136)
|||||+|+|+.. ...++.+|+.+.++ |+++|++||+++. +...+|++.++. |++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 999999999987 46688999999876 9999999999753 455688888874 6776
No 156
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=2.8e-17 Score=179.83 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=102.1
Q ss_pred EEECCcEEEEEccCCCChhHHHhccc--CC-CCCceeEEEEEEcCccCChh--cccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLA--GR-KTGGIIEGDIYISGYPKRQE--TFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
.|++|++++|+||||||||||+++|+ |. .. ..|.+++++...... ...+.+||.+|+....+.+++.++...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 68999999999999999999999999 55 33 246677776543211 122345666665433333443333211
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----- 1000 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD----- 1000 (1136)
.... . ..+... . ....+.++......+..-..+|++|+|||||++||
T Consensus 103 ~~~~----------~---~~~~~~----------~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGL----------P---SEEKFV----------L-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred cccc----------c---ccccee----------c-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 0000 0 000000 0 01234455555444444568999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHH---------HHhc-CEEEEEe
Q 001154 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDI---------FESF-DELLFMK 1043 (1136)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~---------~~~~-d~~~~l~ 1043 (1136)
+..+..+.++++.+++.|+|||+++|+.+. . ...+ |++++|+
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 677777999999988789999999999763 3 4677 9999996
No 157
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.62 E-value=2.4e-18 Score=194.08 Aligned_cols=157 Identities=12% Similarity=0.031 Sum_probs=107.4
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++|++.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 689999999999999999999999996542 1 221 347999999988888 99999864221 1
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1011 (1136)
..+.....+.+.++++.++ .+..+..+ ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111222344667777776 44333322 3799999999999999999999999999999998521 112
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 1012 ~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
+++. + .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 2221 3 346666665433333445544443
No 158
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.62 E-value=5.4e-17 Score=178.57 Aligned_cols=131 Identities=16% Similarity=0.253 Sum_probs=95.2
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCcee-EEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|.|.++|.++ +|++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i---------~~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI---------EYVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC---------CSCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc---------eeecCCccee-------
Confidence 3678888 89999999999999999999999999754 34 79999998764 2333322100
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
.. . ..+++.. ..| |++||++|..+|++|++|||| |+
T Consensus 75 -------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0112210 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
.+...+ ++. ++.|.+|++++|+.+ ....+|++++|.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 443 357999999999976 456778876664
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=6e-16 Score=196.27 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=103.8
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
...+++|+++.+.+|++++|+|||||||||||+++++.... ...| +|+|+.....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC------------------CccccccccchH----
Confidence 45689999999999999999999999999999999431000 0000 011111000000
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEPTSG 998 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEPTsg 998 (1136)
+++++..+++. +.. ..++|++++++..+|++| +.+|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 00001111111 111 135788888888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 999 LDARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 999 LD~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
+|+.....+ +.+++.+.+ .|+|+|++||+.+ +.+.+|++..+.+ |++.+.++
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~n-g~v~~~~~ 807 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNN-LHVTALTT 807 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEE-EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEe-eEEEEEec
Confidence 999988777 677788876 4999999999954 5678898887764 67765544
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.60 E-value=3.4e-17 Score=187.16 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=126.5
Q ss_pred cccccccccC-ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----------hc
Q 001154 831 ELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------ET 899 (1136)
Q Consensus 831 ~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~ 899 (1136)
+.++..+.++ +..+|+++ +.|.+||++||+||||||||||+++|+|...+ ..|.|.+.|.+... ..
T Consensus 47 ~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 47 LRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp TCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred eecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhh
Confidence 3344444444 56789999 99999999999999999999999999998763 47899998864211 12
Q ss_pred ccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHH
Q 001154 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979 (1136)
Q Consensus 900 ~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i 979 (1136)
+.+.+.++.|.+. +..+.+.-.. ....+.+.....+ .+...-...+..||+|| ||+++
T Consensus 124 ~~~~v~~~~~~~~-----~~~~r~~~~~------------~~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 124 LSKCVLVVTTSDR-----PALERMKAAF------------TATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HTTEEEEEECTTS-----CHHHHHHHHH------------HHHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhceEEEEECCCC-----CHHHHHHHHH------------HHHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHH
Confidence 3455777777532 2222221100 0000111111111 01000001134699999 89999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 980 a~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
| +.+|++ |+|||+.....+.+.++++.+ .|. ||++++||++ ...+|+++++. +|+++..+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~ 248 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTR 248 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeC
Confidence 9 688877 999999999999999999864 477 9999999987 35689999997 58999887
Q ss_pred CC
Q 001154 1053 PL 1054 (1136)
Q Consensus 1053 ~~ 1054 (1136)
++
T Consensus 249 ~l 250 (347)
T 2obl_A 249 EL 250 (347)
T ss_dssp HH
T ss_pred CH
Confidence 64
No 161
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=1.6e-15 Score=184.24 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=111.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhh
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAG 234 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 234 (1136)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 668999999999999999999999999998754 232 12455566542 12222210
Q ss_pred hhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhH
Q 001154 235 QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314 (1136)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkR 314 (1136)
+ .+. + .+. +...|+....+.. ...|||||+||
T Consensus 330 ~--------------------~g~----~------------------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S--------------------WGM----D------------------FEE-MERQNLLKIVCAY-----PESAGLEDHLQ 361 (525)
T ss_dssp T--------------------TSC----C------------------HHH-HHHTTSEEECCCC-----GGGSCHHHHHH
T ss_pred H--------------------cCC----C------------------HHH-HHhCCCEEEEEec-----cccCCHHHHHH
Confidence 0 000 0 111 1234554444433 34699999999
Q ss_pred HHHHHHHhCCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHhccCCeEEEEEecCh----------hHHHhhcCeEE
Q 001154 315 LTTGELLVGPARVLFMDEISNGLDSS-----TTYQIIKYLKHSTRALDGTTVISLLQPA----------PEAYELFDDVI 379 (1136)
Q Consensus 315 vsia~al~~~p~vlllDEptsgLD~~-----t~~~i~~~l~~~~~~~~~t~ii~~~q~~----------~~~~~~~D~vi 379 (1136)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. .+.++++ +.|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 99999999988765 3445554 55555 66778999999
Q ss_pred EEcCCe
Q 001154 380 LLSEGQ 385 (1136)
Q Consensus 380 lL~~G~ 385 (1136)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 162
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.58 E-value=1.5e-16 Score=171.71 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=94.3
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCC--CCC---ceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
.+++|++++|+||||||||||+++|+|. .++ +...|.+++++..... .+.+++++|...+.+. |+.||+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 5899999999999999999999999983 221 1234577777753210 1123344443332222 33333221
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH-HHHHHHHHHHHHhh-------CCCEEEEeCCCC
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELVA-------NPSIVFMDEPTS 997 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~ia~aL~~-------~p~illLDEPTs 997 (1136)
. ...+. .+++.+..+.+++. +|++|++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 01222 33344555666655 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcH---HHHHhcCEEEEEecC
Q 001154 998 GLDAR-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSI---DIFESFDELLFMKRG 1045 (1136)
Q Consensus 998 gLD~~-------~-----~~~i~~~l~~l~~-~g~tii~~~H~~~~---~~~~~~d~~~~l~~g 1045 (1136)
++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|++++|.+|
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 99983 2 2367777777764 49999999994331 255678999999864
No 163
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.58 E-value=1.9e-15 Score=191.64 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=70.5
Q ss_pred CCCChhhhhHHHHHHHH--hCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 305 KGISGGQKKRLTTGELL--VGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al--~~~p~vlllDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ +..++.+.+..+. +++.++|. .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~-~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGA-FCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCC-EEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCC-EEEEEcCc-HHHHHHhccccee
Confidence 46899999888888888 999999999999999999999888 5666766643344 44556677 5677899999999
Q ss_pred cCCeEEEecChhhH
Q 001154 382 SEGQIVYQGPRVSV 395 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1136)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998876654
No 164
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=9.4e-17 Score=203.00 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=96.7
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+..+++|||+.+++|++++|+|||||||||||+++++..... .. |..+... ...++++ +.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~i--- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRM--- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhC---
Confidence 467899999999999999999999999999999997632100 00 1000000 0011111 1111111
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1136)
++.+.... +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 724 -------------------------------g~~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 724 -------------------------------GAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred -------------------------------ChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11111110 124689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCcHHHHHhcCE
Q 001154 1001 ARAAAIVM-RTVRNIVN-TGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 1001 ~~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
+.....+. .+++.+.+ .|+|||++||+++ +.+.+|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888887 77777765 5999999999965 3444443
No 165
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.57 E-value=2.1e-17 Score=186.01 Aligned_cols=159 Identities=14% Similarity=0.050 Sum_probs=85.3
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC-CCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 916 (1136)
.++++.++++++|.| +|+|+||||||||+++|+|. .. +.+| +.++|.+.......+.++|++|.+.....
T Consensus 7 ~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ 77 (301)
T 2qnr_A 7 QVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLR 77 (301)
T ss_dssp -----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEE
T ss_pred eECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccC
Confidence 446678999999998 99999999999999999986 43 3567 87777665332223557999998888888
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|+.|+..++..... . +.....++.+.+ ..+... .++|||||||+.+||+++ +|++||||
T Consensus 78 ltv~Dt~g~~~~~~~-~----e~~~~l~~~l~~------~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt 137 (301)
T 2qnr_A 78 LTVVDTPGYGDAINC-R----DCFKTIISYIDE------QFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPF 137 (301)
T ss_dssp EEEEEEC----------------CTTHHHHHHH------HHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred cchhhhhhhhhhcCc-H----HHHHHHHHHHHH------HHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence 999998876432210 0 000111111111 112222 369999999999998875 99999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 001154 997 SG-LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPS 1029 (1136)
Q Consensus 997 sg-LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 1029 (1136)
++ ||+... +.++++.+. +.++|++.||..
T Consensus 138 ~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 138 GHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 84 999873 556666543 789999999964
No 166
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.56 E-value=3.2e-16 Score=179.10 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=124.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC----------CCCceEEEEecc
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------VPPRTSAYVSQQ 217 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q~ 217 (1136)
..+|+++ +.|.+|++++|+|||||||||||++|+|...++ .|.|.+.|++..+. ...+.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4689999 999999999999999999999999999998876 89999988642110 123567788876
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
+. ...+.+.-.... ..+ .+.....| .|.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~---------------------------------ae~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTI---------------------------------AEYFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHH---------------------------------HHHHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHH---------------------------------HHHHHhcc----ccH
Confidence 42 222222111000 000 00000001 010
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCe-----EEEEEecChhHHH
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT-----TVISLLQPAPEAY 372 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t-----~ii~~~q~~~~~~ 372 (1136)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+..+++ +|++.+|+.. .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 00001234599999 899999 578776 99999999999999998875312355 6666778776 6
Q ss_pred hhcCeEEEEcCCeEEEecChhhH
Q 001154 373 ELFDDVILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 373 ~~~D~vilL~~G~iv~~G~~~~~ 395 (1136)
.+||++++|.+|+++..|+..+.
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999987654
No 167
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.55 E-value=4.6e-16 Score=194.13 Aligned_cols=129 Identities=21% Similarity=0.141 Sum_probs=95.5
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+..+++|+|++ |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHH
Confidence 45789999999 999999999999999999999995320 0123221 1 1 1345677766 33444444
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEP--- 995 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEP--- 995 (1136)
|++. .++|+|+++++.+|++| +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 4331 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 996 TSGLDARAA-AIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 996 TsgLD~~~~-~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
|++||..+. ..+.+.|++ .|+|+|++||+.+
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 467777765 5899999999954
No 168
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.54 E-value=1.2e-15 Score=196.04 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=111.7
Q ss_pred eeeeeceeEEEeC-------CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEE-EEeccCC
Q 001154 148 LTILDDLSGIIRP-------SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDW 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~ 219 (1136)
..+++|+++.+++ |++++|+|||||||||||++| |++... ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 3589999999987 999999999999999999999 987421 1234 9999763
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
.+||.|+|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555411 0 01110000
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.....+|++++ ++++|++++.+|++++||||++|+|+... ..++..|+.+.+.. +.+++.++|..+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01124677666 49999999999999999999999999885 44678888876543 455666789998888999999
Q ss_pred EEEcCCeEE--EecChh
Q 001154 379 ILLSEGQIV--YQGPRV 393 (1136)
Q Consensus 379 ilL~~G~iv--~~G~~~ 393 (1136)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 455543
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.53 E-value=1.8e-16 Score=169.03 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=105.1
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCC--CCCCHHHHHHHhhh
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMTVRETLDFAGQ 235 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 235 (1136)
.++|++++|+||||||||||+++|+|.+++ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 479999998766 56899988765321
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh----
Q 001154 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ---- 311 (1136)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq---- 311 (1136)
.. + . .....+..+++.+++.+..+.. ...+|+||
T Consensus 61 ~~--~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-A----------------------------------FDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG--G-G----------------------------------BCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch--h-h----------------------------------hhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 10 0 0 0012245566777776554433 33589996
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHhccCCeEEEEEe
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNG-------LDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsg-------LD~~t~~~i~~~l~~~~~~~~~t~ii~~~ 365 (1136)
+||+++|++++.+|.++++||||++ ||+....++.+.+++.....+.+++.+.|
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4788999999999999999999999 99999999999888754333445444333
No 170
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.53 E-value=1.2e-15 Score=164.64 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=92.0
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc----ceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~----~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
+-+++|++++|+||||||||||+++|+|.+.+.. ...|.|.+++... ...+.+++++|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654421 1234566555321 011223344443332222 3333332
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
+.. ..++++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 211 122222
Q ss_pred -hhHHHHHHHHh-------CCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhccCCeEEEEEecChh--
Q 001154 312 -KKRLTTGELLV-------GPARVLFMDEISNGLDSS-------T-----TYQIIKYLKHSTRALDGTTVISLLQPAP-- 369 (1136)
Q Consensus 312 -kkRvsia~al~-------~~p~vlllDEptsgLD~~-------t-----~~~i~~~l~~~~~~~~~t~ii~~~q~~~-- 369 (1136)
++.+..+++++ .+|+++++||||++||+. . ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 22233343333 489999999999999984 1 2367888888776544 55555778444
Q ss_pred --HHHhhcCeEEEEcCCe
Q 001154 370 --EAYELFDDVILLSEGQ 385 (1136)
Q Consensus 370 --~~~~~~D~vilL~~G~ 385 (1136)
.+...+|.++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
No 171
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.52 E-value=2.3e-17 Score=175.91 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=109.7
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCC--CCCcHHHHHHHHhhh
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWL 929 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~ltv~e~l~~~~~l 929 (1136)
.++|+++||+||||||||||+++|+|...+ .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999986431 368999988766 5678988875431
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 001154 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ----RKRLTIAVELVANPSIVFMDEPTSG------- 998 (1136)
Q Consensus 930 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqrl~ia~aL~~~p~illLDEPTsg------- 998 (1136)
..+... ..+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123456677777766544332 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 001154 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQP 1028 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l-~~~g~tii~~~H~~ 1028 (1136)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 172
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.52 E-value=5.9e-16 Score=173.81 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=101.6
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cc--cceEEEeccCCCCCCCCcHHHHHH
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDIHSPGLTVLESLL 924 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~ltv~e~l~ 924 (1136)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.++|++|++.+.|..+++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999997653 468999999875321 11 345899999998888899999987
Q ss_pred HHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHH
Q 001154 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDAR 1002 (1136)
Q Consensus 925 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTsgLD~~ 1002 (1136)
+... +.. + ..+++..|+.+..+ .-++..++||++|||+|+.+|+ +|.|| |+++
T Consensus 179 ~~~~-~~~-d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKA-RGY-D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHH-HTC-S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHh-CCC-C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 6421 100 0 01122223222111 1245566899999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCC
Q 001154 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQP 1028 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tii~~~H~~ 1028 (1136)
..+++.++.+.+. |.|+|++||+.
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4456666666544 89999999974
No 173
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.51 E-value=2.9e-14 Score=142.56 Aligned_cols=83 Identities=24% Similarity=0.317 Sum_probs=69.0
Q ss_pred CccCCCCChhhhhHHHHH------HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 001154 301 DEMLKGISGGQKKRLTTG------ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia------~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1136)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++... + .+|+.++|+. ++...
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-I-PQVILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-S-SEEEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-C-CEEEEEEChH-HHHHh
Confidence 345567999999999876 8999999999999999999999999999999987643 4 4455566776 67899
Q ss_pred cCeEEEE--cCCeE
Q 001154 375 FDDVILL--SEGQI 386 (1136)
Q Consensus 375 ~D~vilL--~~G~i 386 (1136)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
No 174
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.51 E-value=4.5e-15 Score=163.27 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=93.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
++|+++| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 8999999999999999999999999998641 279999998764211 11111122211
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011110 112
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
|++||++|..+|+++++|||| |..+...+++ . +. .+.+ |++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988665543 2 22 2444 555666654 6788999988854
No 175
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.50 E-value=7.3e-16 Score=176.92 Aligned_cols=138 Identities=21% Similarity=0.198 Sum_probs=94.2
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCC--CC--ceeEEE-EEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TG--GIIEGD-IYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.+.+++|++++|+||||||||||++.|++.. ++ |-..|. |+|++.... .++.+++++|...+.+. ++.+|+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni 200 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHI 200 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCE
Confidence 4689999999999999999999999999854 21 111367 889886431 12345566665443322 333333
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-------ANPSIVFMDEPT 996 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-------~~p~illLDEPT 996 (1136)
.+.. . .-|.+|+|++.++++++ .+|++|++||||
T Consensus 201 ~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 201 YVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp EEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred EEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 2110 0 01456777777777777 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCc
Q 001154 997 SGLDARA------------AAIVMRTVRNIVN-TGRTIVCTIHQPS 1029 (1136)
Q Consensus 997 sgLD~~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~ 1029 (1136)
+++|+.. ...+++.|+++++ .|+|||+|+|...
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999852 3556666777765 5999999999854
No 176
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.50 E-value=2e-15 Score=165.00 Aligned_cols=71 Identities=18% Similarity=0.100 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCC-----HHHHHHHHHHHHHHHhccCCeEEEEEecChhHH---------Hhhc
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLD-----SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA---------YELF 375 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD-----~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~---------~~~~ 375 (1136)
++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.+. +++|+.++|...++ ..+|
T Consensus 121 ~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~--g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--GVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--CCEEEEEECCC----CCSSSSSCGGGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC--CCeEEEEECCCCCCcccccccChhhEe
Confidence 34444444444457999999999999998 66667788888887643 45555577887777 6788
Q ss_pred -CeEEEEc
Q 001154 376 -DDVILLS 382 (1136)
Q Consensus 376 -D~vilL~ 382 (1136)
|+|++|+
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 9999995
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=2.1e-16 Score=165.11 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-CCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 239 (1136)
|++++|+||||||||||+++|+|.+. . +| |.++|....+. ...+.++|++|+.. .. ++++ ++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~---~~~l---~~~~~~ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GT---RGPL---SRVGLE 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEETT--SC---EEEE---EECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEecc--cc---eehh---hccccc
Confidence 78999999999999999999999986 4 78 88888766433 23577899999751 11 1111 010000
Q ss_pred CCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHH-HH
Q 001154 240 GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TG 318 (1136)
Q Consensus 240 ~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs-ia 318 (1136)
+. +...+..+|. ....+|||||+++. ++
T Consensus 68 --------------------~~------------------------------~~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 68 --------------------PP------------------------------PGKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp --------------------CC------------------------------SSSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred --------------------CC------------------------------ccccccccce-EEEcchHHHHHHHHHHh
Confidence 00 0001124443 23469999999984 44
Q ss_pred H---HHhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCeEEE---EEecChhHHHhhcCeEEEEcCCeEEEec
Q 001154 319 E---LLVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVI---SLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1136)
Q Consensus 319 ~---al~~~p~vlllDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~~~D~vilL~~G~iv~~G 390 (1136)
+ |+..+|++++||| |+..+|......|.+.++ . ..++|+ +++|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5889999999999 899999987666666554 2 234443 3336553 3466888888888887643
No 178
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.49 E-value=3.7e-15 Score=187.06 Aligned_cols=155 Identities=13% Similarity=0.021 Sum_probs=101.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+..+++|+++. ++|++++|+|||||||||||++|+|....+ . .|..+... ...+++++| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q---~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----Y---IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----T---TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----h---cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 999999999999999999999999852110 0 12111111 133566554 33444444
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1136)
|++..+ .+.+|+|+++ +..+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 443210 1246777664 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEe
Q 001154 1001 ARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1136)
Q Consensus 1001 ~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~ 1051 (1136)
+.....+ +.+++.+.+ .|.++|++||+++ ....+|++..+. +|++.+.
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~-n~~~~~~ 750 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVA-NVHLDAL 750 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEE-EEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceE-EEEEEEE
Confidence 8776665 788888887 4999999999975 345677654454 3455543
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=1.9e-15 Score=173.40 Aligned_cols=168 Identities=20% Similarity=0.193 Sum_probs=98.9
Q ss_pred eeeece-eEEEeCCeEEEEEcCCCCChhHHHHHHHhhh--CCCc-ceeeE-EEECCccCCCCCCCceEEEEeccCCCCCC
Q 001154 149 TILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHL-QVSGK-ITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 149 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l--~~~~-~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1136)
..|+++ ++.+++|++++|+||||||||||++.|++.. ++.. ...|+ |++++.+. ..++.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~---~~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC---CCHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC---CCHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987 3320 11367 78877543 112345666665543333
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
++.+|+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555554332100
Q ss_pred CCCCChhhhhHHHHHHHHh-------CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHhccCCeEEEEE
Q 001154 304 LKGISGGQKKRLTTGELLV-------GPARVLFMDEISNGLDSST------------TYQIIKYLKHSTRALDGTTVISL 364 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~-------~~p~vlllDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~~ 364 (1136)
-|++|++++.++++++ .+|+++++||||++||+.. ..+++..|+.+++.. +++|+.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~-~~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-CcEEEEE
Confidence 0233444444444443 7899999999999999852 356667777777654 4555556
Q ss_pred ecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 365 LQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 365 ~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
.|........|++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 776666655666677777787766554
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.48 E-value=1.7e-13 Score=162.37 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=64.2
Q ss_pred CCCChhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 305 KGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~----~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
..||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .++++++++|. .+....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 359999999999999999 78999999999999999999999999998743 24555556676 567889999999
Q ss_pred Ec
Q 001154 381 LS 382 (1136)
Q Consensus 381 L~ 382 (1136)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 181
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.47 E-value=3.5e-14 Score=179.64 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=98.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..|++|+|+.+++|++++|+|||||||||||+++++..-.. ..|. +.+.. .+.++.-+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccch-hhhhhHHHHHHHhCChH
Confidence 46899999999999999999999999999999998753110 0110 01111 11111111112222211
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 1110 122468
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE-EcCCe
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII-KYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL-LSEGQ 385 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil-L~~G~ 385 (1136)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+ .+++.++|+. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g-~tvl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK-SLTLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC-CEEEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC-CeEEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8999999999999999999999987 66776655334 4455566764 44566665421 33444
Q ss_pred EEE
Q 001154 386 IVY 388 (1136)
Q Consensus 386 iv~ 388 (1136)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 182
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.47 E-value=1.7e-14 Score=180.06 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=94.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC-CCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + .....++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4678999998 99999999999999999999999753 22 45431 0 11234677766 3455555
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55542 24
Q ss_pred CChhhhhHHHHHHHH--hCCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 001154 307 ISGGQKKRLTTGELL--VGPARVLFMDEI---SNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 307 LSGGqkkRvsia~al--~~~p~vlllDEp---tsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+.+.|++ .+.+ ++.++|..+. ..++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~-vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAY-TLFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCE-EEEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCE-EEEEeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 568888765 2344 4556676544 3444
No 183
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.46 E-value=4e-15 Score=167.02 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---------CceEEEEeccCCCCCCCCHHHHH
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVRETL 230 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 230 (1136)
+|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999876 8999999988643321 23589999998888889999999
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChh
Q 001154 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1136)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGG 310 (1136)
.++.. .+. +. .+++..|+.+..+. -++..
T Consensus 178 ~~~~~-~~~----d~--------------------------------------~llDt~G~~~~~~~--------~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY----DL--------------------------------------LFVDTAGRLHTKHN--------LMEEL 206 (304)
T ss_dssp HHHHH-HTC----SE--------------------------------------EEECCCCCCTTCHH--------HHHHH
T ss_pred HHHHh-CCC----CE--------------------------------------EEecCCCCCCchHH--------HHHHH
Confidence 76421 100 00 00111222221111 14555
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC
Q 001154 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1136)
Q Consensus 311 qkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1136)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.+.|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999994444 455555556666666665544555555 5554
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=3e-15 Score=168.44 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=80.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh-hCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~-l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
+.+++++++.| +|+||||||||||++.|+|. +.+. +| |.++|.++..-...+.++|++|.+.....+||
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEE
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 46999999998 99999999999999999996 5543 78 88888765432223457999998877788999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.||..++..... ..+++ ..++++.+. .+ ...++
T Consensus 81 ~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~~~ 113 (301)
T 2qnr_A 81 VDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYLHD 113 (301)
T ss_dssp EEEC------------CT-----------------------------------THHHHHHHH------HH-----HHHHH
T ss_pred hhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHHHH
Confidence 999877432110 00000 011111111 11 23356
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHhccCCeEEEEEecCh
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNG-LDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsg-LD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1136)
+|||||||+.+||+++ ++++||||++ ||+... +.++.+... .+.++|...|+.
T Consensus 114 ~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~-~~iilV~~K~Dl 167 (301)
T 2qnr_A 114 ESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNK-VNIVPVIAKADT 167 (301)
T ss_dssp HTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTT-SCEEEEECCGGG
T ss_pred hCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhc-CCEEEEEEeCCC
Confidence 9999999999998885 9999999985 999873 455555432 245555555554
No 185
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.46 E-value=7.3e-14 Score=155.65 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=100.6
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999997432 2433 23433211 2346677655421 11112211 111
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HH
Q 001154 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS--GLDARA---AA 1005 (1136)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs--gLD~~~---~~ 1005 (1136)
. +... ...+++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245677777776665432 346999998765 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 001154 1006 IVMRTVRNIV-NTGRTIVCTIHQPS 1029 (1136)
Q Consensus 1006 ~i~~~l~~l~-~~g~tii~~~H~~~ 1029 (1136)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
No 186
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.46 E-value=9.7e-16 Score=188.42 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=109.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC------CCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhc
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK------EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1136)
++|+|||||||||||++|+|...| ..+|.|+++|.++. ....++.++|++|+..+++.+||+|++.++....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P--~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP--RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC--CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998755 13899999998742 1123567999999999999999999998753221
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHH
Q 001154 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1136)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi 317 (1136)
+... .++| ++++.+
T Consensus 126 ~~~~---------------------------------------------------------------~~~s---~~~i~l 139 (608)
T 3szr_A 126 AGEG---------------------------------------------------------------MGIS---HELITL 139 (608)
T ss_dssp HCSS---------------------------------------------------------------SCCC---SCCEEE
T ss_pred cCCc---------------------------------------------------------------cccc---hHHHHH
Confidence 0000 0111 122222
Q ss_pred HHHHhCCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh----HHHhh--------cCeEE
Q 001154 318 GELLVGPARVLFMDEI------SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP----EAYEL--------FDDVI 379 (1136)
Q Consensus 318 a~al~~~p~vlllDEp------tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~~--------~D~vi 379 (1136)
+.+....|+++++||| |+|||+....++.+.++.+.....+.+++.++|+.+ ++..+ ...|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 2233458999999999 999999999999999998765444566666776654 22222 24578
Q ss_pred EEcCCeEEEecChhhHHH
Q 001154 380 LLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~ 397 (1136)
++.++.++..|+.+++.+
T Consensus 220 VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEECGGGSSSSSTTCCCC
T ss_pred EecchhhcCcccHHHHHH
Confidence 888888887777655443
No 187
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.45 E-value=4e-16 Score=163.06 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=99.5
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~ 933 (1136)
|++++|+||||||||||+++|+|... .+| |.++|++..+ ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999654 257 7788876533 23567899999975 1111 111 01100
Q ss_pred cccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 001154 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRL-TIAV---ELVANPSIVFMDE--PTSGLDARAAAI 1006 (1136)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl-~ia~---aL~~~p~illLDE--PTsgLD~~~~~~ 1006 (1136)
...+ ..+..++.. ...+|+|||+++ ++++ |+..+|+|||||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 001122322 235999999888 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHHhCCCEEEE----EecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 1007 VMRTVRNIVNTGRTIVC----TIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~----~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
+.+++ +...++|+ ++|+.+. ...|++..+. +|+++...+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeCh
Confidence 55444 34445553 2388642 2345655554 578777654
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.45 E-value=8.6e-15 Score=157.92 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=103.1
Q ss_pred EEeeeEE-EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccc---eEEEeccCCCCCCCCcH
Q 001154 844 LLVNVTG-AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR---ISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 844 ~L~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~Q~~~~~~~ltv 919 (1136)
.|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.......+ ..++.+|..... .+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 4556664 789999999999999999999999997532 12344444333221111000 111111110000 0000
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTS 997 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTs 997 (1136)
++.....++ .... ....|.++.++...+.....+|+ +|++||||+
T Consensus 88 ------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 000000000 0000 12358999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------HHHHHhcCEEEEEec
Q 001154 998 GL--DARAAAIVMRTVRNIVN-TGRTIVCTIHQPS-------IDIFESFDELLFMKR 1044 (1136)
Q Consensus 998 gL--D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~-------~~~~~~~d~~~~l~~ 1044 (1136)
++ |+.....+++.|+++++ .|.|||+++|+.. ..+...+|++++|.+
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 88 99999999999999864 5999999999972 136677999999975
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.44 E-value=1.9e-14 Score=164.93 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=84.1
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~---------------- 180 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHR---------------- 180 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTT----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecc----------------
Confidence 56889999999999999999999999965421 13555443333211 1111122333321111
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001154 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1136)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1010 (1136)
..++..+ +||++|..+|++|++|||| |.++. +.
T Consensus 181 ------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~----~~ 213 (356)
T 3jvv_A 181 ------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETI----RL 213 (356)
T ss_dssp ------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH----HH
T ss_pred ------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH----HH
Confidence 0122222 9999999999999999999 66554 34
Q ss_pred HHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 1011 l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+++++|.||++|+|+.+. ...+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 44456679999999999873 377899888753
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.43 E-value=3e-13 Score=145.80 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=63.0
Q ss_pred CCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCeEEEEEecCh--------hHHHh
Q 001154 306 GISGGQKKRLTTGELLVGPAR--VLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPA--------PEAYE 373 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~--vlllDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~~~ 373 (1136)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888777778999 99999999888 9999999999999987654 45666677777 55889
Q ss_pred hcCeEEEEcCC
Q 001154 374 LFDDVILLSEG 384 (1136)
Q Consensus 374 ~~D~vilL~~G 384 (1136)
++|+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999764
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=8.7e-15 Score=170.78 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=91.1
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++++.+++++||.| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|++.+.+.+|
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 44567899999998 999999999999999999975421112222222211 112356899999988888899
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS---IVFMDEP 995 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~---illLDEP 995 (1136)
+.|++.+...... .. ....+.+.+ + ..++.+++||++|||+++.+|+ +|++|||
T Consensus 92 v~Dt~g~~~~~~~------~~---~~~~i~~~i------~--------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 92 IVDTPGFGDAVDN------SN---CWQPVIDYI------D--------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp EEECC--------------------CHHHHHHH------H--------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred eeechhhhhhccc------hh---hHHHHHHHH------H--------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 9999877543210 00 011121111 0 1356677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 996 T-SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 996 T-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
| +|||+... +.++.+. .+.+||+++|..+
T Consensus 149 t~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred cccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9 69998763 4445554 3788888888643
No 192
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.39 E-value=7.7e-13 Score=135.70 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 967 NGLSTEQRKRLTIAVELVA----NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~----~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|++||+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 5799999999999999974 4699999999999999999999999999854 57899999985 467889999866
Q ss_pred e
Q 001154 1043 K 1043 (1136)
Q Consensus 1043 ~ 1043 (1136)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 3
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.39 E-value=3.6e-14 Score=174.41 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=93.3
Q ss_pred EEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC------hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999998653 14899999998741 13467789999999999999999999976432110
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHH
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP------TSGLDARAAA 1005 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP------TsgLD~~~~~ 1005 (1136)
. .+ . ++| ++++.++++...+|+++++||| |+|||+....
T Consensus 127 ~------------------~~-~-------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 G------------------EG-M-------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp C------------------SS-S-------------CCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred C------------------Cc-c-------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0 00 0 011 1112222233458999999999 9999999999
Q ss_pred HHHHHHHHHHh--CCCEEEEEecCCc
Q 001154 1006 IVMRTVRNIVN--TGRTIVCTIHQPS 1029 (1136)
Q Consensus 1006 ~i~~~l~~l~~--~g~tii~~~H~~~ 1029 (1136)
.+.++++++.. .+.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 99999999754 3678899999876
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.39 E-value=5.4e-13 Score=148.63 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=99.3
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhh
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1136)
-+++|++++|+||||||||||++.|++.+. .|++ +.|.+.. ....+.|+..++.. ..+.+.+. .+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---AL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HH
Confidence 589999999999999999999999998664 4555 3343321 13467888766531 01111110 00
Q ss_pred cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHH
Q 001154 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316 (1136)
Q Consensus 237 ~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 316 (1136)
+... .....+.+++.+++.+..+. .+..||+||++++
T Consensus 91 --------------------g~~~-----------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 91 --------------------GAHL-----------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp --------------------HTTS-----------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred --------------------Hhhc-----------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0000 01124556777777765443 3446999998876
Q ss_pred HHHHHhCCCcEeEEeCCCC--CCCHHH---HHHHHHHHHHHHhccCCeEEEEEecChhHH
Q 001154 317 TGELLVGPARVLFMDEISN--GLDSST---TYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1136)
Q Consensus 317 ia~al~~~p~vlllDEpts--gLD~~t---~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1136)
++++.+|+++++||||+ ++|... ..++++.|+.+++..+. +|+.++|.....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~-tvi~i~H~~~~~ 184 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGC-SIVFLHHASKGA 184 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCC-EEEEEEEC----
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCC-EEEEEecCCCcc
Confidence 57888999999999999 999744 47888899888765544 455566765443
No 195
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.39 E-value=1.1e-13 Score=173.82 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=100.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..+++|+++. ++|++++|+|||||||||||++|+|..... ..| ..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974211 012 11100 0123455544 34455555
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 554221 1135
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|+|+++ ++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+ .+++.++|+.+ ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g-~~vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK-ALTLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC-CEEEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC-CeEEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998877775 667777765334 44555667764 4568898877888887
Q ss_pred EEec
Q 001154 387 VYQG 390 (1136)
Q Consensus 387 v~~G 390 (1136)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 196
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.5e-14 Score=167.94 Aligned_cols=176 Identities=19% Similarity=0.169 Sum_probs=111.8
Q ss_pred cCceEEEeeeEEEEECCcE--EEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+++.+ |++||+++++|++ +||+||||||||||+++|+|... .|... ... .....++.++|++|++.+++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccc
Confidence 34445 8999999999999 99999999999999999999742 12111 110 111234578999999988888
Q ss_pred CcHHHHHHHHhhhcCCCcccHH----HHHHHHHHHHHHc-CCC----cccccc----cc--CCCCCCCCHHHHHHHHHHH
Q 001154 917 LTVLESLLFSAWLRLPSEIELE----TQRAFVEEVMELV-ELT----SLSGAL----IG--LPGINGLSTEQRKRLTIAV 981 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~----~~~~~v~~~l~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqrl~ia~ 981 (1136)
+||.|++.|+.... ...... ......++.+... ++. ...|.. +. .+...+|+..+ +.|++
T Consensus 97 ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk 171 (427)
T 2qag_B 97 LTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMK 171 (427)
T ss_dssp EEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHH
T ss_pred cchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHH
Confidence 99999987653211 000000 1122344445443 332 112221 11 12224577766 78999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 001154 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRN-IVNTGRTIVCTIHQ 1027 (1136)
Q Consensus 982 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~ 1027 (1136)
+|..+++||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 172 ~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 172 KLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999986 76779999988864
No 197
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.37 E-value=9.9e-15 Score=154.99 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=88.5
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC---CceeEEEEEEcCcc-C-ChhcccceEEEeccCCCCCCCC-
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYP-K-RQETFARISGYCEQNDIHSPGL- 917 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~~-~-~~~~~~~~~gyv~Q~~~~~~~l- 917 (1136)
+|++ +.+.+|+.++|+|+||||||||++.|+|... ..+..|.+.+.+.- . ....+....|+..+. .+..
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHHH
Confidence 4455 6788999999999999999999999999651 01334544321110 0 000000001111100 0000
Q ss_pred --cHHHHHHHHhhh-cC----------CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH-HHHHHHH
Q 001154 918 --TVLESLLFSAWL-RL----------PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR-LTIAVEL 983 (1136)
Q Consensus 918 --tv~e~l~~~~~l-r~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr-l~ia~aL 983 (1136)
..+..+...... +. ..... ..+..+.++++..++..+. +.. ....+|+||||| +..++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~---v~n-K~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLV---LLT-KADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEE---EEE-CGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEE---EEe-cccCCCchhHHHHHHHHHHH
Confidence 011111111000 00 00011 1122334455555543221 111 123689999999 8999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~t 1020 (1136)
+.+|.++++|||||++|..+...+++.|.++..+|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988765544
No 198
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.36 E-value=8.9e-13 Score=159.67 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=69.5
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 967 NGL-STEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 967 ~~L-SgGqrqrl~ia~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||||||++. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999987 899999999965 556799999996
Q ss_pred c
Q 001154 1044 R 1044 (1136)
Q Consensus 1044 ~ 1044 (1136)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 5
No 199
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=2.7e-14 Score=152.88 Aligned_cols=126 Identities=20% Similarity=0.155 Sum_probs=86.0
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH----HHHHHHH
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV----LESLLFS 926 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv----~e~l~~~ 926 (1136)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.... .++.++|++|++..++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 457999999999999999999999999765213689999988765432 24557899987544433333 1221111
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
.. .. +.| +++ +.+++..++++||| ||+.++..
T Consensus 91 ~~-------------------------------~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 GN-------------------------------YY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp TE-------------------------------EE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred hc-------------------------------cC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 00 00 111 121 34555668999999 99999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCc
Q 001154 1007 VMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
+++.+. ++.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999965
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=1.2e-13 Score=147.81 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=99.1
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH----HHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV----RETLD 231 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 231 (1136)
-..++|++++|+||||||||||+++|+|.+++. ...|.|.+.+.+.... ..+.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 457899999999999999999999999998752 4689999988765432 23467899998765554444 22221
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
+. |+ +.|-.
T Consensus 89 ~~------------------------------------------------------------------~~-----~yg~~ 97 (219)
T 1s96_A 89 VF------------------------------------------------------------------GN-----YYGTS 97 (219)
T ss_dssp ET------------------------------------------------------------------TE-----EEEEE
T ss_pred HH------------------------------------------------------------------hc-----cCCCC
Confidence 11 10 11111
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+++.|...++.. |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 221 23344457999999 99999999998775 35677777788777655 42 6777 577
Q ss_pred hhhHHHHHH
Q 001154 392 RVSVLDFFA 400 (1136)
Q Consensus 392 ~~~~~~~F~ 400 (1136)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765443
No 201
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.31 E-value=1.1e-11 Score=132.32 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=93.2
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
.+++|++++|+||||||||||++.|++ ..+ .+.++++.. ... +...+.+... .
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~-----------------~~~-~~~~~~~~~~-----~ 68 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTE-----------------GGF-SPERLVQMAE-----T 68 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESS-----------------CCC-CHHHHHHHHH-----T
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECC-----------------CCC-CHHHHHHHHH-----h
Confidence 578999999999999999999999998 221 233444432 111 0001111110 0
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHH----
Q 001154 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTIAVELVAN-PSIVFMDEPTSGLDARA---- 1003 (1136)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~ia~aL~~~-p~illLDEPTsgLD~~~---- 1003 (1136)
. .... +++++.+.+ . ..|++ +++++..+++++.+ |+++++||||+.+|+..
T Consensus 69 ~--~~~~-------~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~ 126 (220)
T 2cvh_A 69 R--GLNP-------EEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSG 126 (220)
T ss_dssp T--TCCH-------HHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSST
T ss_pred c--CCCh-------HHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHH
Confidence 0 0111 122222211 1 23333 46788899999986 99999999999999732
Q ss_pred ----HHHHHHHHHHHHhC-CCEEEEEecCCcH------------HHHHhcCEEEEEecC
Q 001154 1004 ----AAIVMRTVRNIVNT-GRTIVCTIHQPSI------------DIFESFDELLFMKRG 1045 (1136)
Q Consensus 1004 ----~~~i~~~l~~l~~~-g~tii~~~H~~~~------------~~~~~~d~~~~l~~g 1045 (1136)
...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 127 ~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 127 LIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 34566667877654 9999999997541 356679999999754
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.31 E-value=5.9e-13 Score=152.49 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhh
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1136)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+. +...+...++++|.+....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~-------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHRD-------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTTT--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeeccc--------------
Confidence 56889999999999999999999999998652 145654433222 2222222334444321000
Q ss_pred cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHH
Q 001154 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316 (1136)
Q Consensus 237 ~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 316 (1136)
.++-.+ +
T Consensus 182 ---------------------------------------------------------------------~~~~~~----~ 188 (356)
T 3jvv_A 182 ---------------------------------------------------------------------TLGFSE----A 188 (356)
T ss_dssp ---------------------------------------------------------------------BSCHHH----H
T ss_pred ---------------------------------------------------------------------cCCHHH----H
Confidence 011111 8
Q ss_pred HHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 317 ia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
||++|..+|+++++|||+ |..+...+.+. +. .|.+ +++++|..+.+ ..+||++.|..|
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALTA----AE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHHH----Hh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 999999999999999999 76664444433 33 2445 56666776665 889999988654
No 203
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.28 E-value=5.5e-15 Score=171.25 Aligned_cols=164 Identities=16% Similarity=0.071 Sum_probs=96.1
Q ss_pred eeeceeEEEeC--CeEEEEEcCCCCChhHHHHHHHhhhCCCccee----eEEEEC----CccCCCCCCC--ceEEEEecc
Q 001154 150 ILDDLSGIIRP--SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS----GKITYN----GHGFKEFVPP--RTSAYVSQQ 217 (1136)
Q Consensus 150 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~----G~I~~~----G~~~~~~~~~--~~~~yv~Q~ 217 (1136)
+.+.|++.+++ |+.++|+||||||||||+++|+|.+.+. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45689999999 9999999999999999999999998774 6 776653 2221 10000 112333222
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
... ...|++|||.|.. .+..++
T Consensus 233 ~~~-~~~t~~~nl~~~~---------------------------------------------------------~~~~~~ 254 (365)
T 1lw7_A 233 YID-YAVRHSHKIAFID---------------------------------------------------------TDFITT 254 (365)
T ss_dssp HHH-HHHHHCSSEEEES---------------------------------------------------------SCHHHH
T ss_pred HHH-HHHhccCCEEEEe---------------------------------------------------------CCchHH
Confidence 110 0112222221100 000001
Q ss_pred cccCccCCCCChhhhhHHHHHHHHh-CCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLV-GPARVLFMDE---IS------NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~-~~p~vlllDE---pt------sgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1136)
. ...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++ +.++
T Consensus 255 ~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~ 328 (365)
T 1lw7_A 255 Q-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP 328 (365)
T ss_dssp H-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS
T ss_pred H-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC
Confidence 1 1135677788888887764 5899999999 65 5889999999999998776543444444 5555
Q ss_pred hhHHHhhcCeEEEEc
Q 001154 368 APEAYELFDDVILLS 382 (1136)
Q Consensus 368 ~~~~~~~~D~vilL~ 382 (1136)
.+...++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 34555555555443
No 204
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.28 E-value=7.4e-12 Score=128.36 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=64.3
Q ss_pred CCCCChhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~----~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +++++|+ ..+...+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 66899999999999999999999999998754 344 4445555 45778999998
Q ss_pred EE--cCCeE
Q 001154 380 LL--SEGQI 386 (1136)
Q Consensus 380 lL--~~G~i 386 (1136)
.+ .+|..
T Consensus 138 ~v~~~~g~s 146 (173)
T 3kta_B 138 GVSMRDGVS 146 (173)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCEE
Confidence 66 45643
No 205
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.27 E-value=6e-12 Score=134.40 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=57.3
Q ss_pred CChhh--hhHHHHHHHHhCC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHhccCCeEEEEEecChh------
Q 001154 307 ISGGQ--KKRLTTGELLVGP-ARVLFMDEISNGLDSST--------TYQIIKYLKHSTRALDGTTVISLLQPAP------ 369 (1136)
Q Consensus 307 LSGGq--kkRvsia~al~~~-p~vlllDEptsgLD~~t--------~~~i~~~l~~~~~~~~~t~ii~~~q~~~------ 369 (1136)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+.+++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899986 99999999999999732 355667788887765555554 556543
Q ss_pred -------HHHhhcCeEEEEcCC
Q 001154 370 -------EAYELFDDVILLSEG 384 (1136)
Q Consensus 370 -------~~~~~~D~vilL~~G 384 (1136)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.27 E-value=2.9e-14 Score=149.20 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCcHHHHHHHHhhh
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~l 929 (1136)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|... +..|+.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 367899999999999999999999999732 58899998653221 11234677777543 457888888764321
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 001154 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1136)
Q Consensus 930 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1009 (1136)
....... ..++.++...++..+... . ..+..+|+|++|+++++|++.++|+++ +|+.....+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~-~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--A-RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--C-SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--C-CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000000111111111100 0 012359999999999999999999876 68887777777
Q ss_pred HHHHH
Q 001154 1010 TVRNI 1014 (1136)
Q Consensus 1010 ~l~~l 1014 (1136)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66554
No 207
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.26 E-value=1.1e-14 Score=152.42 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 240 (1136)
|++++|+||||||||||+++|++.. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 6899999999999999999999732 68899998765332 234677776644556688888876432110
Q ss_pred CchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC---ccCCCC--ChhhhhHH
Q 001154 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD---EMLKGI--SGGQKKRL 315 (1136)
Q Consensus 241 ~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~---~~~~~L--SGGqkkRv 315 (1136)
..+ -....+...+. +..+.+ |+|+++++
T Consensus 71 --------------~~~---------------------------------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 --------------LAQ---------------------------------NDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp --------------HTT---------------------------------CEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred --------------hcC---------------------------------CcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 000 00000000000 001224 89999998
Q ss_pred HHHH------HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC-hhHHHhhcCeEEEEcCCeEEE
Q 001154 316 TTGE------LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP-APEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 316 sia~------al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~-~~~~~~~~D~vilL~~G~iv~ 388 (1136)
.++. +++.+++...+|+ +||+..... ++.++.+.. . ..+++..+|. .+++.+++|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~-~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-D-ERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-C-TTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-C-ccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8888888888884 899988877 777776642 2 3345545666 788999999999 9999999
Q ss_pred ecChhhH
Q 001154 389 QGPRVSV 395 (1136)
Q Consensus 389 ~G~~~~~ 395 (1136)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
No 208
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.26 E-value=6.6e-15 Score=154.03 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=107.2
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCc
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE 934 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~ 934 (1136)
|++++|+||||||||||+++|++. ..|.+.++|.+... ....|+++|.....+..++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 689999999999999999999972 24778898864321 1234677775544445677887765432110
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccC---CCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHH
Q 001154 935 IELETQRAFVEEVMELVELTSLSGALIGL---PGINGL--STEQRKRLTIAV------ELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 935 ~~~~~~~~~v~~~l~~l~l~~~~~~~~~~---~~~~~L--SgGqrqrl~ia~------aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
. -+...+.+..... .....+ |+|++|++.++. +++.+|+...+|+ +||+..
T Consensus 71 --------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 --------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 0000001100000 000124 778888888888 8999998888884 899988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecC-CcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1004 AAIVMRTVRNIVNTGRTIVCTIHQ-PSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~~g~tii~~~H~-~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
... ++.++.+.+.+.+||.++|. ++ ++.+.+|+|+ +.|+++..|++
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~ 179 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAG 179 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC---
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecC
Confidence 888 88888876567899999998 76 5778899988 46899888875
No 209
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.26 E-value=4.4e-13 Score=155.08 Aligned_cols=129 Identities=17% Similarity=0.283 Sum_probs=92.0
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCcee-EEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 566665 78999999999999999999999999654 23 688877765543 12344567777731
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+++. ...+ +.+|+++|..+|++|++|||| |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 0134 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
+.. .+++. +..|.+|++|+|+.+ ....+|+++.|
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 543 34444 356999999999865 45556665444
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.25 E-value=3.9e-13 Score=136.12 Aligned_cols=77 Identities=18% Similarity=0.065 Sum_probs=65.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
.+++++|+.+++|++++|+||||||||||+++|+|.+ +. +|+|.++|.++......+ .|++|+..++ .+||.|
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 5899999999999999999999999999999999998 65 899999998764211111 2899998777 899999
Q ss_pred HHHH
Q 001154 229 TLDF 232 (1136)
Q Consensus 229 ~l~f 232 (1136)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 211
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.25 E-value=2.9e-15 Score=170.06 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=99.3
Q ss_pred cEEEEEccCCCChhHHHhcccCCCCC------ceeEEEEEEcCccCChh------------------cccceEEEe---c
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRKTG------GIIEGDIYISGYPKRQE------------------TFARISGYC---E 908 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 908 (1136)
++++|+|+||||||||++.|+|...+ .+..|+|.+||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 13578899998765321 233446666 5
Q ss_pred cCCCCCCCCcHHHHHHHHhhhcCCCcc---cHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 909 QNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 909 Q~~~~~~~ltv~e~l~~~~~lr~~~~~---~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
|+..+.+..++.|+..++......... ........++.++..+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 766555677777766432100000000 0000000111222233333333322 1589999999998899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888874 6899999999753
No 212
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.2e-12 Score=152.89 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=76.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 225 (1136)
+.+++|+|+.| +|+||||||||||+++|+|...+. .| ++|...... ...+.++|++|++..++.+|
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~---~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYS---PE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCC---CC---CCSCC-----CCEEEEEECC------CEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCC---CC---CCCcccCCccceeeeeEEEEEecCCccccee
Confidence 46899999998 999999999999999999986542 22 122221110 11245789999988888899
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|.||+.|+..... ... . ...++++ + .
T Consensus 92 v~Dt~g~~~~~~~-~~~---------------------~--------------~~i~~~i-~-----------------~ 117 (418)
T 2qag_C 92 IVDTPGFGDAVDN-SNC---------------------W--------------QPVIDYI-D-----------------S 117 (418)
T ss_dssp EEECC---------------------------------C--------------HHHHHHH-H-----------------H
T ss_pred eeechhhhhhccc-hhh---------------------H--------------HHHHHHH-H-----------------H
Confidence 9999877532110 000 0 0001111 0 1
Q ss_pred CCChhhhhHHHHHHHHhCCCc---EeEEeCCC-CCCCHHHH
Q 001154 306 GISGGQKKRLTTGELLVGPAR---VLFMDEIS-NGLDSSTT 342 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~---vlllDEpt-sgLD~~t~ 342 (1136)
.++.++++|++|||+++.+|+ +|++|||| +|||+...
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence 366678889999999999999 99999999 69998873
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.22 E-value=1.3e-13 Score=141.47 Aligned_cols=112 Identities=21% Similarity=0.164 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---C---C-ceEE----EEeccCCCCCCCCHHHHH
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---P---P-RTSA----YVSQQDWQVAEMTVRETL 230 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~---~-~~~~----yv~Q~d~~~~~lTV~E~l 230 (1136)
++++|+|+||||||||++.|+|.+.+.....|.|.++|+++.+.. . + +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998764233799999998854432 1 1 2355 788876644 000
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChh
Q 001154 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1136)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGG 310 (1136)
+.. +. . ..++++++. .|+ ..||.+++ +||||
T Consensus 77 ---------~~~-----~~-----~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 ---------VSE-----EE-----G------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp ---------CCH-----HH-----H------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred ---------CCh-----hh-----h------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 000 00 0 003334443 133 57899987 59999
Q ss_pred hhhHHHHHHHHhCCCcEe
Q 001154 311 QKKRLTTGELLVGPARVL 328 (1136)
Q Consensus 311 qkkRvsia~al~~~p~vl 328 (1136)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999998763
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.22 E-value=7.8e-13 Score=152.51 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=99.4
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC-ChhcccceEEEec-cCCCCCCCCcHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARISGYCE-QNDIHSPGLTVLE 921 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~-~~~~~~~~~gyv~-Q~~~~~~~ltv~e 921 (1136)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|... .....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 34899999999999999999999999999999998763 579999998532 1122456678887 43321
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
+++++...+-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012223456677788888999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455677776544568899999965 56778999888764
No 215
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.21 E-value=2.8e-12 Score=134.02 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=88.0
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHHHHHHhhh
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQ 235 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 235 (1136)
.+++|++++|+||||||||||+++|+|. +. .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999997 22 799999997643221 1234578887653 45789999876432
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHH
Q 001154 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315 (1136)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRv 315 (1136)
... . .+.. .. ++.++..+++..... .+ .....+|+|++||+
T Consensus 78 ~~~------------~----~~~~--~~------------------~~~~~~~~~l~~~~~--~~-~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYA------------K----EGYF--VI------------------LDGVVRPDWLPAFTA--LA-RPLHYIVLRTTAAE 118 (191)
T ss_dssp HHH------------H----TSCE--EE------------------ECSCCCTTTTHHHHT--TC-SCEEEEEEECCHHH
T ss_pred HHh------------c----cCCe--EE------------------EeccCcHHHHHHHHh--cC-CCeEEEEecCCHHH
Confidence 110 0 0000 00 000000011111110 00 11235999999999
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 316 sia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
.++|++..+|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688776666665543
No 216
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.21 E-value=3.8e-12 Score=146.77 Aligned_cols=78 Identities=22% Similarity=0.194 Sum_probs=55.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEe-ccCCC--CCCCC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVS-QQDWQ--VAEMT 225 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 225 (1136)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 449999999999999999999999999999999999876 899999985311111 345688888 55432 13344
Q ss_pred HHHHH
Q 001154 226 VRETL 230 (1136)
Q Consensus 226 V~E~l 230 (1136)
++++|
T Consensus 241 ~~~~i 245 (361)
T 2gza_A 241 AATLL 245 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 217
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.21 E-value=3.2e-14 Score=155.55 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=97.2
Q ss_pred CCcEEEEEccCCCChhHHHhccc---CCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.+++++|+..+.+..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8765 56788877775432 122334556777777788889999987642100
Q ss_pred CC-----CcccHHHHHHHHHHHHHHcCC--------------CccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 001154 931 LP-----SEIELETQRAFVEEVMELVEL--------------TSLSGALIGLPGINGLSTEQRKRLTIAVEL-VANPSIV 990 (1136)
Q Consensus 931 ~~-----~~~~~~~~~~~v~~~l~~l~l--------------~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL-~~~p~il 990 (1136)
.. ....... ..++.+...... ..+.+.. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0011111 112222211111 1111221 235888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 001154 991 FMD----EPTSGLDARAAAIVMRTVRNIVNTG 1018 (1136)
Q Consensus 991 lLD----EPTsgLD~~~~~~i~~~l~~l~~~g 1018 (1136)
+|| |||++||..+...+.+.++.+.+.+
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999886543
No 218
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.20 E-value=6.4e-12 Score=136.38 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=84.3
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC--CCCC---ceeEEEEEEcCccC-ChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTG---GIIEGDIYISGYPK-RQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~---~~~~G~i~i~g~~~-~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
+-+++|++++|+||||||||||++.|++ ...+ +...|.+++++... ... .+.+..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~-------------------~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE-------------------RLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH-------------------HHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH-------------------HHHHHH
Confidence 3578999999999999999999999998 2321 11356777776531 000 001100
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH-HHHHHHHHh--hCCCEEEEeCCCCCCC
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK-RLTIAVELV--ANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq-rl~ia~aL~--~~p~illLDEPTsgLD 1000 (1136)
..+. ... +++++.+.+ . ...+..+.. .+.-+.+++ .+|+++++|||++.+|
T Consensus 80 ---~~~g----~~~-------~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 80 ---ERYG----LSG-------SDVLDNVAY-------A-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp ---HHTT----CCH-------HHHHHTEEE-------E-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred ---HHcC----CCH-------HHHhhCeEE-------E-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 0000 000 112221100 0 124444433 233344444 4799999999999999
Q ss_pred HH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcHH------------------HHHhcCEEEEEecC
Q 001154 1001 AR-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSID------------------IFESFDELLFMKRG 1045 (1136)
Q Consensus 1001 ~~-------~-----~~~i~~~l~~l~~-~g~tii~~~H~~~~~------------------~~~~~d~~~~l~~g 1045 (1136)
+. + ...+++.|+++++ .|+|||+++|..... +...+|.+++|.++
T Consensus 134 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 134 TDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 75 3 3455666666654 499999999964311 11168999999863
No 219
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.19 E-value=4.6e-11 Score=138.53 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=67.3
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 967 NGLSTEQRKRL------TIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 967 ~~LSgGqrqrl------~ia~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 57999999988 567889999 99999999999999999999999999864 4579999999975 46789999
Q ss_pred EEEecCc
Q 001154 1040 LFMKRGG 1046 (1136)
Q Consensus 1040 ~~l~~gG 1046 (1136)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9997543
No 220
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.18 E-value=4.1e-14 Score=163.89 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=93.2
Q ss_pred eeeEEEEEC--CcEEEEEccCCCChhHHHhcccCCCCCceeE----EEEEEc----CccCC--hhcccceEEEeccCCCC
Q 001154 846 VNVTGAFRP--GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYIS----GYPKR--QETFARISGYCEQNDIH 913 (1136)
Q Consensus 846 ~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~Q~~~~ 913 (1136)
+.|++.|++ |++++|+||||||||||+++|+|... +.. |.|+++ |.+.. ...+ +.++|++|+...
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 367888899 99999999999999999999999765 345 555543 21110 0000 112222221100
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEE
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPSIVFM 992 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-~~p~illL 992 (1136)
+ ..|+.||+.| ++ .+..+.. ...+|+|++|+..+++++. .+|+++||
T Consensus 236 ~-~~t~~~nl~~-------------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 236 Y-AVRHSHKIAF-------------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp H-HHHHCSSEEE-------------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred H-HHhccCCEEE-------------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 0 0111111100 00 0000000 1135667778888887775 59999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 993 DE---PT------SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 993 DE---PT------sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
|| |+ +++|+..+..+.+.|+++.+ .|.+||+++|. + .....++++.++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVI 341 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHH
Confidence 99 65 68999999999999988754 48999999975 3 344445555444
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=4.7e-12 Score=146.94 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=98.2
Q ss_pred eeceeEEEeCCeE--EEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC---CCCceEEEEeccCCCCCCCC
Q 001154 151 LDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 151 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lT 225 (1136)
|+++|+.+++|++ ++|+||||||||||+++|+|.. ..| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 9999999999999999999973 122 222111 11346899999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh-CCcc----ccccc--
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDT----CADTL-- 298 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l-gL~~----~~dt~-- 298 (1136)
|.||+.|+..... ...++.+ ..+ .....+..|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~~-~~~~~~i------------------~~~----------i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQINK-EDSYKPI------------------VEF----------IDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CCH-HHHSHHH------------------HHH----------HHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhcccc-chhhhHH------------------HHH----------HHHHHHHHHHHHHhhhhhhccccccccc
Confidence 9999977532110 0000000 000 011233444443 4431 12222
Q ss_pred --cc--CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 299 --VG--DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 299 --vg--~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
+. .+...+|+-.+ +.|+++|..+++|+++|||+..|.+.....+.+.+++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 11 01113566665 7899999999999999999999999988888888886
No 222
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.16 E-value=5e-12 Score=140.96 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=84.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhh---
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ--- 235 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~--- 235 (1136)
+++.+++|.||+|||||||.+.|++.+.+ .| .. .+.+.+|+|++.+++. ++++++.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------CC------CceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999864 22 00 2345666999988764 89999987521
Q ss_pred -h--cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc--c--cccccccCccCCCCC
Q 001154 236 -C--QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--T--CADTLVGDEMLKGIS 308 (1136)
Q Consensus 236 -~--~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~--~--~~dt~vg~~~~~~LS 308 (1136)
. ++.... -|.+ .....++.+.-. . .....+. .....+|
T Consensus 92 l~~~~g~p~a-------------------~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~s 136 (290)
T 1odf_A 92 LLQGRGLPGT-------------------HDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQF 136 (290)
T ss_dssp GGSSSCSTTS-------------------BCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHH
T ss_pred hhhhccCcch-------------------hHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccC
Confidence 0 111110 1111 133344444322 0 0111122 2335799
Q ss_pred hhhhhHHHHH--HHHhCCCcEeEEeCCCCCCCHHH
Q 001154 309 GGQKKRLTTG--ELLVGPARVLFMDEISNGLDSST 341 (1136)
Q Consensus 309 GGqkkRvsia--~al~~~p~vlllDEptsgLD~~t 341 (1136)
|||+||+++| +++ +|+|+|+|||++++|+..
T Consensus 137 gGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 137 KGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999999997 555 999999999999999853
No 223
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.16 E-value=5e-13 Score=141.75 Aligned_cols=69 Identities=10% Similarity=-0.070 Sum_probs=54.2
Q ss_pred HHHHHHHhCCcccccccccCccCCCCChhhhhH-HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKR-LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 282 ~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkR-vsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
+...++..+++.. .+++ ....+|+||||| +..+++++.+|..+++|||||++|.....++++.|.+...
T Consensus 129 ~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 129 MIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3445556676542 2232 233599999999 8999999999999999999999999999999999988764
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.15 E-value=6.3e-12 Score=143.10 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=80.2
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEc-CccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~ 932 (1136)
+|++++|+||||||||||+++|+|.... +..|+|.++ |.... .+..+.++|++|+..+++..+++|+. +.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~-----l~-- 284 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG-----LW-- 284 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----CC--
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-----hc--
Confidence 7999999999999999999999997641 357999887 65432 23456789999998888888998841 11
Q ss_pred CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 001154 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1136)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL 983 (1136)
....++....+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 285 -~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 285 -HLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -CCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 2334445566778888889887777654 4799 999999999875
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.15 E-value=1.6e-12 Score=152.52 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=100.5
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hc--ccceEEEeccCCCCCCC
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ET--FARISGYCEQNDIHSPG 916 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~~~~~~~ 916 (1136)
+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+... .. .++.++|++|+..+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 37888899999999999999999999999999754 346899998765422 11 24568999999888888
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPS-IVFMDE 994 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-~~p~-illLDE 994 (1136)
+|+++++.+... + ..++ -+++..|+.+... .+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~-~-~~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKA-R-NIDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHH-T-TCSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHh-c-CCCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 999999987532 1 1000 0111112211100 12223457788888663 4574 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 001154 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIH 1026 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H 1026 (1136)
||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886544 33444443 4889999999
No 226
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.14 E-value=4.3e-13 Score=146.52 Aligned_cols=157 Identities=20% Similarity=0.191 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH---hhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhh-
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALA---GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ- 235 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~La---G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~- 235 (1136)
++++++|+||||||||||+++|+ |...+ .+|+|.++|.+... ...+.+.+++|+...++..|+.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 76544 37888887754211 011234556677777888899999976432
Q ss_pred -------hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 236 -------CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 236 -------~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
+.+..... . ..+..... ...+.-. .+.- . .+..+ .... ++.+..||
T Consensus 102 ~~~~~~il~g~~~~~---~---~~~~l~~~-~~~~~vi-----~L~~-~----~~~~l-----~r~~-----~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL---G---QAEALDKI-CEVDLVI-----SLNI-P----FETLK-----DRLS-----RRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSH---H---HHHHHHTT-CCCCEEE-----EEEC-C----HHHHH-----HHHH-----TEEEETTT
T ss_pred cCCCeEEEECCCCCH---H---HHHHHHhh-cCCCEEE-----EEEC-C----HHHHH-----HHHH-----cCCCcCCC
Confidence 11110000 0 00000000 0000000 0000 0 00001 1111 22334699
Q ss_pred hhhhhHHHHHHHH-hCCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q 001154 309 GGQKKRLTTGELL-VGPARVLFMD----EISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 309 GGqkkRvsia~al-~~~p~vlllD----EptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
| |+ +++ +.+|++++|| |||+|||..+...+.+.++.+..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9 66 677 9999999999 99999999999999999987754
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.14 E-value=1.3e-11 Score=142.75 Aligned_cols=131 Identities=22% Similarity=0.266 Sum_probs=92.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...+..++||+|...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec----------
Confidence 677776 8999999999999999999999999998642 2699987776543 333455677777420
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
|++ . ..+
T Consensus 192 ------------------------------------------------------------g~~----~-------~~~-- 198 (372)
T 2ewv_A 192 ------------------------------------------------------------GED----T-------KSF-- 198 (372)
T ss_dssp ------------------------------------------------------------TTT----B-------SCS--
T ss_pred ------------------------------------------------------------CCC----H-------HHH--
Confidence 000 0 123
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+. .+++++|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~-~vi~t~H~~-~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGH-LVFGTLHTN-TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTC-EEEECCCCC-SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCC-EEEEEECcc-hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 22 344 456566664 4778888887664
No 228
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=7.2e-14 Score=159.55 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=105.0
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cccceEEEeccCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIH 913 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~ 913 (1136)
...+|+++|+.+++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++.+
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3457889999999999999999999999999999999654 2368888888664321 235568999998877
Q ss_pred CCCC------------cHHHHHHHH-----------------------------hhhcCCCcccHHHHHHHHHHHHHHcC
Q 001154 914 SPGL------------TVLESLLFS-----------------------------AWLRLPSEIELETQRAFVEEVMELVE 952 (1136)
Q Consensus 914 ~~~l------------tv~e~l~~~-----------------------------~~lr~~~~~~~~~~~~~v~~~l~~l~ 952 (1136)
++.. +++|.+... ..+..+.. ..........+++...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~--~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA--GDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC--cccHHHHHHHHhcccc
Confidence 6431 233332110 00000000 0000000001112221
Q ss_pred CCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 953 l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
+.-+ ++.. ......+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 197 ivvl-NK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1111 1111 00113579999999999999987 688886 999999999999999988653
No 229
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.13 E-value=4.2e-13 Score=135.84 Aligned_cols=81 Identities=22% Similarity=0.118 Sum_probs=66.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++..++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .|++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34556889999999999999999999999999999999976 3 4799999998764211111 3799988888 899
Q ss_pred HHHHHHH
Q 001154 919 VLESLLF 925 (1136)
Q Consensus 919 v~e~l~~ 925 (1136)
+.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.12 E-value=3.4e-12 Score=149.77 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=67.9
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------C--CCceEEEEeccCCCC
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------V--PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~--~~~~~~yv~Q~d~~~ 221 (1136)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998765 89999987654321 0 134689999998878
Q ss_pred CCCCHHHHHHHhh
Q 001154 222 AEMTVRETLDFAG 234 (1136)
Q Consensus 222 ~~lTV~E~l~f~~ 234 (1136)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998863
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.12 E-value=6.3e-12 Score=143.11 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=79.8
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC-CCcceeeEEEEC-CccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYN-GHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+++++.. .+|++++|+||||||||||+++|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4556654 4799999999999999999999999887 65 8999987 755432 23467899999998899999998
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
+ .. .+.. ..+ ....+.++++.+|+.+..|... .++|
T Consensus 281 ~---~l--~~l~----------~~e------------------------~~~~~~e~l~~~gl~~f~~~~~-----~~lS 316 (358)
T 2rcn_A 281 F---GL--WHLE----------PEQ------------------------ITQGFVEFHDYLGHCKYRDCKH-----DADP 316 (358)
T ss_dssp C---CC--CCCC----------HHH------------------------HHHTSGGGGGGTTCSSSTTCCS-----SSCT
T ss_pred h---hh--cCCC----------HHH------------------------HHHHHHHHHHHcCCchhcCCCc-----ccCC
Confidence 3 21 1100 000 0112455677788877666544 4699
Q ss_pred hhhhhHHHHHHHH
Q 001154 309 GGQKKRLTTGELL 321 (1136)
Q Consensus 309 GGqkkRvsia~al 321 (1136)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999865
No 232
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.12 E-value=3e-12 Score=149.35 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=95.0
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
++|+++++.|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.++.-+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 69999999999999999999999999999998643 23344322 12233555555431 01111111100
Q ss_pred HhhhcCCCcccHHHHH--HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 926 SAWLRLPSEIELETQR--AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
...............+ +.++.++..+++. +. ....||+|++|++.+|++|+.+|.||++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000001111000 0111122222222 11 1246999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCE
Q 001154 1004 AAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 1004 ~~~i~~~l~~l-~~~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
. ..++.+++. .+.|.+++.+|......+-+.++.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 6 444444444 345777776654322234444443
No 233
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.12 E-value=1e-10 Score=138.31 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 967 NGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|||++ ...+.+|+++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 57999999999999999999999999999865588999999994 467789999998
Q ss_pred ec
Q 001154 1043 KR 1044 (1136)
Q Consensus 1043 ~~ 1044 (1136)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 234
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.10 E-value=4.1e-11 Score=120.15 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=36.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT-IVCTIHQP 1028 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~t-ii~~~H~~ 1028 (1136)
+.+|++|++|||++ +|...+..+.+.+..+.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 56799999999998 6655588899999988877888 88898864
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.10 E-value=5.5e-12 Score=142.82 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=94.7
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cccce--EEEeccCCCCCCCCcHHHHH
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARI--SGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~~~~~~~ltv~e~l 923 (1136)
++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+++. +.|++|...+.|.++++|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 5899999999999999999999999755 3468999998875321 12233 45999999899999999999
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
.+...... +. -+++..++.+..+. =.++.-.|++++..++.+++||.+|. .
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~-~---- 255 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG-N---- 255 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-T----
T ss_pred HHHHhccc--hh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-H----
Confidence 76432110 00 01111222211111 12233348899988888888885554 3
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecC
Q 001154 1004 AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tii~~~H~ 1027 (1136)
.+++.++.+.+ .+.|+|++||.
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 44555566653 58999999994
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.10 E-value=6.1e-11 Score=128.61 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999999999995
No 237
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.07 E-value=8.1e-13 Score=135.50 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=82.5
Q ss_pred cEEEEEccCCCChhHHHhcccCCCCC-ceeEEEEEEcCccCC------hhccc-ceEE----EeccCCCCCCCCcHHHHH
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKR------QETFA-RISG----YCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~~~~~~~ltv~e~l 923 (1136)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 57999999999999999999996542 233799999998732 12333 3466 7888765440
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV-------FMDEP 995 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il-------lLDEP 995 (1136)
+.. . .+....++++++. +. . .|..++ .+||||||||++|||+++.+|++. .=|.|
T Consensus 75 ------~~~---~-~~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV---S-EEEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC---C-HHHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC---C-hhhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 100 0 0001124455554 43 2 355554 259999999999999999998762 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 001154 996 TSG---LDARAAAIVMRTVRNIVNTGR 1019 (1136)
Q Consensus 996 Tsg---LD~~~~~~i~~~l~~l~~~g~ 1019 (1136)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 233445566777755555543
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=2.4e-12 Score=146.91 Aligned_cols=181 Identities=13% Similarity=0.068 Sum_probs=108.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 5899999999999999999999999999999999998765 89999998776322 1245689999998766
Q ss_pred CCC------------CHHHHHHHh-h-hh-----cCCCCchhhhHHHHHHHHHhCC----CCCchhHHHHHHhhccCcch
Q 001154 222 AEM------------TVRETLDFA-G-QC-----QGVGSKYDMITELARREKIAGI----KPDEDLDIFMKSFALGGQKT 278 (1136)
Q Consensus 222 ~~l------------TV~E~l~f~-~-~~-----~~~~~~~~~~~~~~~~e~~~~~----~~~~d~~~~~~~~~~~~~~~ 278 (1136)
... +++|.+... . .. ..+|-... +.. .+..... .....-+.. + ..
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~~-v~~~~d~vl~v~d~~~~~~~-~-------~i 187 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ETA-VADLTDFFLVLMLPGAGDEL-Q-------GI 187 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHH-HHTTSSEEEEEECSCC--------------C
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hhh-HHhhCCEEEEEEcCCCcccH-H-------HH
Confidence 532 233333110 0 00 01111000 000 0000000 000000000 0 00
Q ss_pred hHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001154 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHS 352 (1136)
Q Consensus 279 ~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~------~p~vlllDEptsgLD~~t~~~i~~~l~~~ 352 (1136)
...+..+...+.+ +..|.. ....+|+|+++++..+.+++. .|++++ +|++|......+++.|.+.
T Consensus 188 ~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001122222223 222211 113479999999999999887 578877 9999999999999999875
Q ss_pred H
Q 001154 353 T 353 (1136)
Q Consensus 353 ~ 353 (1136)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 4
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.04 E-value=1.6e-11 Score=139.10 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=61.0
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---------CceEEEEeccCCCCCCCCHHH
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999999765 8999999987643221 123569999988899999999
Q ss_pred HHHHh
Q 001154 229 TLDFA 233 (1136)
Q Consensus 229 ~l~f~ 233 (1136)
++.++
T Consensus 203 ~l~~~ 207 (328)
T 3e70_C 203 AIQHA 207 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.03 E-value=1e-10 Score=121.01 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=42.0
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 983 LVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 983 L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
.+.+|++|+||||++ ++|+.....+.+++....+.|+++|++||.+.
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 355999999999995 99999999999999988778999999999865
No 241
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.02 E-value=2.2e-13 Score=154.55 Aligned_cols=167 Identities=15% Similarity=0.115 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCC-----cceeeEEEECCccCCCCCC------------------CceEEEE---
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHH-----LQVSGKITYNGHGFKEFVP------------------PRTSAYV--- 214 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~-----~~~~G~I~~~G~~~~~~~~------------------~~~~~yv--- 214 (1136)
=++++|+|+|||||||||+.|+|..... ....|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999975210 1238999999987654311 1234555
Q ss_pred eccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccc
Q 001154 215 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1136)
Q Consensus 215 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~ 294 (1136)
+|+...++..||.||..++... ........... .. .. ..++.++..+++.+.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~---------~~---~~---------~~l~~~l~~vd~~~~ 135 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEV---------LC---QR---------YLLDGVIALVDAVHA 135 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHH---------HH---HH---------EEEEEEEEEEETTTH
T ss_pred HhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCcc---------cc---Ce---------EEECCEEEEEEHHHH
Confidence 4555445566666666443100 00000000000 00 00 001112222333333
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 001154 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1136)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1136)
.+... .+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+|+.++|...++..+
T Consensus 136 ~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 136 DEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCGGGG
T ss_pred HHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCHHHH
Confidence 32221 48999999998888888888877 888 67777787763 234555566644334333
Q ss_pred c
Q 001154 375 F 375 (1136)
Q Consensus 375 ~ 375 (1136)
+
T Consensus 196 ~ 196 (318)
T 1nij_A 196 F 196 (318)
T ss_dssp S
T ss_pred h
Confidence 3
No 242
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.00 E-value=1.4e-11 Score=143.92 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=89.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEe-----
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVS----- 215 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~----- 215 (1136)
..+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++..... .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3477887 4 4899999999999999999999999999875 8999999877632111 12334444
Q ss_pred ----ccCCC--CCC----CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHH
Q 001154 216 ----QQDWQ--VAE----MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1136)
Q Consensus 216 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v 285 (1136)
|++.. +++ .|+.+++.++..-...-.. +....... +...
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------------------------------lh~~~~~~-~i~r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------------------------------LHTNTAVG-AVTR 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------------------------------ECCSSSHH-HHHH
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------------------------------cchhhHHH-HHHH
Confidence 77644 344 5788887764311000000 00000011 2224
Q ss_pred HHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeE
Q 001154 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1136)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vll 329 (1136)
|..+|++... . ...|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~--~-----~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--I-----SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--H-----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--H-----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5677886542 2 23699999999 9999999999876
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.00 E-value=2.6e-12 Score=154.01 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=66.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..+++++++.+++|+.++|+|||||||||||++|+|.+++. +|.|+++|..--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 35789999999999999999999999999999999999876 899999986522222234567777765533456888
Q ss_pred HHHHHhhh
Q 001154 228 ETLDFAGQ 235 (1136)
Q Consensus 228 E~l~f~~~ 235 (1136)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876555
No 244
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.00 E-value=6.6e-10 Score=128.74 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCccc-------ccccccC----ccCCCCChhhhhHH------HHHHHHhCC-CcEeEEeCCCCCCCHHHH
Q 001154 281 VVEYIMKILGLDTC-------ADTLVGD----EMLKGISGGQKKRL------TTGELLVGP-ARVLFMDEISNGLDSSTT 342 (1136)
Q Consensus 281 ~~~~vl~~lgL~~~-------~dt~vg~----~~~~~LSGGqkkRv------sia~al~~~-p~vlllDEptsgLD~~t~ 342 (1136)
.++..++.+++.+. .+..+.+ ..+..||||||||+ ++|++++++ |++|+|||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34567777877651 1222222 34467999999988 567899999 999999999999999999
Q ss_pred HHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 343 ~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..+.+.|+++.. +++ |++++|.. ++..++|++++|+
T Consensus 324 ~~l~~~l~~~~~--~~~-vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKS--IPQ-MIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCCS--CSE-EEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhcc--CCe-EEEEEChH-HHHhhCCEEEEEE
Confidence 999999987532 345 44556665 4789999999997
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.99 E-value=2.1e-10 Score=133.15 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=86.4
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcc--cCCCC---CceeEEEEEEcCccC-Chhc---ccceEEEeccCCCCCCCCcHH
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVL--AGRKT---GGIIEGDIYISGYPK-RQET---FARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+-|++|++++|+||||||||||++.| .+..+ ++...+.+++++... .... +.+.+|+.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~----------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD----------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----------
Confidence 35789999999999999999999954 44432 112245777777531 1100 0111111111
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELV--ANPSIVFMDEPTS 997 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~ia~aL~--~~p~illLDEPTs 997 (1136)
.+++.+.+ . ...+. .+.+.+.-+.+++ .+|++|++||||+
T Consensus 242 -------------------------~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 -------------------------DALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp -------------------------HHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred -------------------------hHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 12221110 0 01222 2334444444443 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------HHHHHhcCEEEEEecC
Q 001154 998 GLDARAA------------AIVMRTVRNIVNT-GRTIVCTIHQPS------------------IDIFESFDELLFMKRG 1045 (1136)
Q Consensus 998 gLD~~~~------------~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~~~~~~d~~~~l~~g 1045 (1136)
.+|+... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9996432 5678888888754 999999999721 1134557999998753
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.98 E-value=7.4e-11 Score=132.60 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=79.1
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE---CCccCCCCCC--C-ceEEEEeccCCCC-----CCCCH
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP--P-RTSAYVSQQDWQV-----AEMTV 226 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV 226 (1136)
+.+|++++|+||||||||||+|+|+ .+.+. +|+|.+ +|.+.+.... . +.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3468999999999999999999999 87665 899999 8877654321 1 2579999998542 67899
Q ss_pred HHHH--HHhhhhcCCCCchhhhHHH-HHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc-cccccccCc
Q 001154 227 RETL--DFAGQCQGVGSKYDMITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVGDE 302 (1136)
Q Consensus 227 ~E~l--~f~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-~~dt~vg~~ 302 (1136)
|++ .|+. . .+. |+ ..+..+. .+....++++++.+||.+ .++...
T Consensus 238 -e~l~~~f~~-~----------~~~~c~---~~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~--- 285 (302)
T 2yv5_A 238 -REVRNYFRE-F----------LRYQCK---YPDCTHT--------------NEPGCAVKEAVKNGEISCERYKSYL--- 285 (302)
T ss_dssp -GGGGGGCGG-G----------HHHHHH---STTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHH---
T ss_pred -HHHHHHHHH-H----------HHccCC---CCCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHH---
Confidence 888 4431 0 000 00 0000000 111224788899999985 565544
Q ss_pred cCCCCChhhhhHHHHHH
Q 001154 303 MLKGISGGQKKRLTTGE 319 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~ 319 (1136)
+.|||.++|++.|||
T Consensus 286 --~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 --KIIKVYLEEIKELCR 300 (302)
T ss_dssp --HHTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 459998999999986
No 247
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.98 E-value=1.4e-11 Score=143.64 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=98.0
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHH
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1136)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+..+. ...++++.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 478999999999999999999999999999998632 2334333322 234566666541 111221111
Q ss_pred HH---hhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 231 DF---AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 231 ~f---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
-+ +....+.+. . +.+. ..+++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~------------------fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------E------------------FLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------H------------------HHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------H------------------HHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 10 000000000 0 0000 00011222223332 2234469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
|+||+||+.+|++|...|.++++ +++|.... ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999876 55555555444334455554445444455555443
No 248
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.98 E-value=9.5e-11 Score=121.31 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=36.6
Q ss_pred hCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 322 VGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 322 ~~~p~vlllDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999985 9999999999998887653 356666666555443
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.97 E-value=2.3e-11 Score=135.66 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=82.7
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhh----
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW---- 928 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~---- 928 (1136)
+++.++||+|++|||||||.+.|++.... .| . -++.+.+|+|++.+++. +.++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 36789999999999999999999986431 11 1 02345566999888764 88899887521
Q ss_pred hc---CCCcccHHHHHHHHHHHHHHcCCCc--c--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 001154 929 LR---LPSEIELETQRAFVEEVMELVELTS--L--SGALIGLPGINGLSTEQRKRLTIA--VELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 929 lr---~~~~~~~~~~~~~v~~~l~~l~l~~--~--~~~~~~~~~~~~LSgGqrqrl~ia--~aL~~~p~illLDEPTsgL 999 (1136)
+. .|.... .+...+.++.+.... . ....+. .....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 223445555553320 0 000010 11247999999999987 555 89999999999999
Q ss_pred CHH
Q 001154 1000 DAR 1002 (1136)
Q Consensus 1000 D~~ 1002 (1136)
|+.
T Consensus 166 d~~ 168 (290)
T 1odf_A 166 NPI 168 (290)
T ss_dssp CCC
T ss_pred Ccc
Confidence 985
No 250
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.97 E-value=7.5e-13 Score=154.61 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=95.6
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccce
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARI 903 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~ 903 (1136)
.+.+.+..++...+|+++ + .++|++++|+|||||||||||++|+|...+ .+|.|.+.|.++.. ....+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccc
Confidence 444555555555678888 4 389999999999999999999999996552 36889988876531 122334
Q ss_pred EEEec---------cCCCCC--CC----CcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 904 SGYCE---------QNDIHS--PG----LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 904 ~gyv~---------Q~~~~~--~~----ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
+|+.+ |++... .. .|+.+++.+....+.. ...........+ +.+..+++.... . ..
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~ 292 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SS 292 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HH
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HH
Confidence 55654 876542 33 5899998775321110 000000011222 245667776542 1 24
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.|||||+|| ||++|+.+|++..
T Consensus 293 ~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 293 SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHH--hhhhhcCCCCccC
Confidence 699999999 9999999999876
No 251
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=5.3e-11 Score=133.79 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=79.2
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChh--ccc-ceEEEeccCCCCC-----CCCcHHH
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TFA-RISGYCEQNDIHS-----PGLTVLE 921 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~ltv~e 921 (1136)
.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.+.. .+. +.+||++|.+.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 368999999999999999999999 765 46899999 88765432 112 2579999998654 67899 8
Q ss_pred HH--HHHh------hhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 001154 922 SL--LFSA------WLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVE 982 (1136)
Q Consensus 922 ~l--~~~~------~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~a 982 (1136)
++ .|.. .++.. ....+....++++++.++|.+ ..+... ..|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~--~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDC--THTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTC--CSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 88 4531 12210 011122345789999999975 455443 3699988999999874
No 252
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.91 E-value=1.5e-12 Score=156.02 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=104.4
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
..+++++++.+++|+.++|+|||||||||||++|+|..++ ..|.|.++|.+.-.......+++..|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3467899999999999999999999999999999998763 47899998864211111234555555433222334444
Q ss_pred HHHHHhhhcCCC------cccHHHHH------------------HHHHHHHHHcCCCc--cccccccC-----CCCCCCC
Q 001154 922 SLLFSAWLRLPS------EIELETQR------------------AFVEEVMELVELTS--LSGALIGL-----PGINGLS 970 (1136)
Q Consensus 922 ~l~~~~~lr~~~------~~~~~~~~------------------~~v~~~l~~l~l~~--~~~~~~~~-----~~~~~LS 970 (1136)
.+... +|... ++...+.. ..+.++++.+.... +....... .....+|
T Consensus 325 ~l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 43321 11100 01100000 01223333332211 10000000 0012479
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcHHHHHhc
Q 001154 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC--TIHQPSIDIFESF 1036 (1136)
Q Consensus 971 gGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~--~~H~~~~~~~~~~ 1036 (1136)
+||+||+++|. + | |+|||+.+...+++.|.++...|+|+++ ++|+.+ ++...+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999987752 1 7 9999998888777777777666889985 899865 344444
No 253
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=7.9e-10 Score=127.12 Aligned_cols=134 Identities=15% Similarity=0.028 Sum_probs=71.9
Q ss_pred EEEEccCCCChhHHHhcccC-CCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcc
Q 001154 858 TALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI 935 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~ 935 (1136)
+.|.||||+|||||+++|++ ... +..|.+.++|.+... ......+++++|.+.+....+- .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD---------MG---NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHhh---------cC---Cc
Confidence 89999999999999999999 333 236888888865432 1124557888886543211110 00 00
Q ss_pred cHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001154 936 ELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1136)
Q Consensus 936 ~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1014 (1136)
... .+.+.++.+. ...+.+. . .||| +..+|+|+|+|||++ ||+.+...+.+.+.+.
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~-~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQ-D------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred chH----HHHHHHHHHHHhcccccc-c------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 000 1223333221 1111110 0 3465 788999999999999 9999999999999875
Q ss_pred HhCCCEEEEEecCCc
Q 001154 1015 VNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 1015 ~~~g~tii~~~H~~~ 1029 (1136)
. .+.++|+++|+++
T Consensus 162 ~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMS 175 (354)
T ss_dssp T-TTEEEEEEESCSC
T ss_pred c-CCCEEEEEeCCHH
Confidence 3 4789999999976
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.88 E-value=4.6e-11 Score=126.88 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhc
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1136)
.++|++++|+||||||||||+++|+|.+.+. | ..+++|++++.++.. +..+++... ..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~-~~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLL-PRK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCG-GGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhccc-ccC
Confidence 4789999999999999999999999998642 2 146777777655432 222222100 000
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHH
Q 001154 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1136)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi 317 (1136)
+....+ +.+ .....+..+......++.+.+.. .++||||+||+++
T Consensus 78 ~~~~~~-------------------~~~---------------~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPETF-------------------DFE---------------GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGP 122 (208)
T ss_dssp TSGGGB-------------------CHH---------------HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECT
T ss_pred CCCchh-------------------hHH---------------HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcC
Confidence 000000 000 01112222211112223344433 3589999999998
Q ss_pred H-HHHhCCCcEeEEeCCC
Q 001154 318 G-ELLVGPARVLFMDEIS 334 (1136)
Q Consensus 318 a-~al~~~p~vlllDEpt 334 (1136)
+ ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 7777777777788873
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.88 E-value=1e-11 Score=137.77 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=94.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccC-CCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD-WQVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 224 (1136)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.+
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 5899999999999 999999999999999999998753 789999977643321 23466777763 345555
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
++.|++.+....++. .. .+ .+....+ ...
T Consensus 107 ~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~~-----~~l 135 (274)
T 2x8a_A 107 IFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVVN-----QLL 135 (274)
T ss_dssp EEEETCTTTCC-------------------------------------------------------CTTHHH-----HHH
T ss_pred EeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHHH-----HHH
Confidence 666665442211000 00 00 0011111 122
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISN------------GLDSSTTYQIIKYL 349 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEpts------------gLD~~t~~~i~~~l 349 (1136)
..|||||+||+.+++|+..+|++| ||++. -.|...+.+|++.+
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 359999999999999999999985 88864 23777777777654
No 256
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=1.5e-11 Score=142.00 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=114.8
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhh----CC-----CcceeeEEEECCccCCC----CCCCceE---EEEeccCCC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRL----GH-----HLQVSGKITYNGHGFKE----FVPPRTS---AYVSQQDWQ 220 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l----~~-----~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~d~~ 220 (1136)
.+++|..++|+|+||||||||+++|+|.. .+ ..+.+|.|.++|..+.. +.+++.+ .++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 11 12458999999853311 1233333 477787777
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccc
Q 001154 221 VAEMTVRETL--DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1136)
Q Consensus 221 ~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 298 (1136)
...++..|++ .|-..++.. +.++..+...
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~------ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF------ 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC------
T ss_pred ccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc------
Confidence 7777766554 332211110 0001111111
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HhccCCeEEEEEecChhHHHhhc
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHS-TRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p--~vlllDEptsgLD~~t~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. . +++++ .|...++.++|
T Consensus 127 -~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~-g~ti~--sh~~~~~~~l~ 189 (392)
T 1ni3_A 127 -DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-G-ANTLE--MKAKKEEQAII 189 (392)
T ss_dssp -CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-S-SCSSS--HHHHHHHHHHH
T ss_pred -ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-c-CCccc--cccHHHHHHHH
Confidence 122233467653 88 999999999999999999999988876 43 2 33333 78888999999
Q ss_pred CeEE-EEcCC-eEEEecChh
Q 001154 376 DDVI-LLSEG-QIVYQGPRV 393 (1136)
Q Consensus 376 D~vi-lL~~G-~iv~~G~~~ 393 (1136)
|++. +|.+| ++++.|+.+
T Consensus 190 ~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 190 EKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHhccCCceeecCCCC
Confidence 9999 99999 888777643
No 257
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=6.6e-09 Score=104.01 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55555 8999999999999999999999998754
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.81 E-value=1.3e-12 Score=137.85 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHH-HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 317 TGE-LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 317 ia~-al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 445 6788888999999999999999999999888765532 1223 1 1 67899888764
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.81 E-value=3.1e-11 Score=128.24 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=33.5
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCC-ceeEEEEEEcCccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPK 895 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 895 (1136)
++|+++||+||||||||||+++|+|...+ |...|.|.++|+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 68999999999999999999999996542 22356666666543
No 260
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.79 E-value=1.8e-08 Score=116.88 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=43.2
Q ss_pred CCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHhccCCeEEEEEecCh-------------------hHH
Q 001154 323 GPARVLFMDEISNGLDSSTT------------YQIIKYLKHSTRALDGTTVISLLQPA-------------------PEA 371 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~------------~~i~~~l~~~~~~~~~t~ii~~~q~~-------------------~~~ 371 (1136)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ +.|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 56788888888776655555 55541 224
Q ss_pred HhhcCeEEEEcCCe
Q 001154 372 YELFDDVILLSEGQ 385 (1136)
Q Consensus 372 ~~~~D~vilL~~G~ 385 (1136)
.+.+|.++.|..++
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999887653
No 261
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.76 E-value=7e-11 Score=135.02 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=94.8
Q ss_pred eeeeceeEEEeCC-------eEEEEEcCCCCChhHHHHHHHhhhCCCc-ceeeEEEECCccCCCC---CCCceEEEEecc
Q 001154 149 TILDDLSGIIRPS-------RLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEF---VPPRTSAYVSQQ 217 (1136)
Q Consensus 149 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~ 217 (1136)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 3566667666665 7899999999999999999999984321 3467776665543211 124578999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
+.+.+ ++.|+|.......+. +.+. . .......++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~----~i~~--~------------------------~~~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQI----DIMI--G------------------------KGPSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhccc----ceee--c------------------------cCcccccccccCCCeEEEE-ecC
Confidence 76554 788888543221110 0000 0 0000111333444455543 455
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~ 356 (1136)
.++ .||+|+|+|+.++ .+||+.+..++.+.|++.++..
T Consensus 159 ~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 159 RSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp CGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred Ccc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 443 5999999998554 7788888899999998877643
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.76 E-value=2.6e-10 Score=128.72 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=58.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEE---CCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1136)
++|++++|+||||||||||+++|+|.+. +. +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 65 899999 88664211 12346788 776677889999999876
Q ss_pred hhh
Q 001154 234 GQC 236 (1136)
Q Consensus 234 ~~~ 236 (1136)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 263
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=7.3e-12 Score=144.62 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=112.7
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCC----------CCceeEEEEEEcCccCCh----hcccceE---EEeccCCCCC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK----------TGGIIEGDIYISGYPKRQ----ETFARIS---GYCEQNDIHS 914 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~~---gyv~Q~~~~~ 914 (1136)
+++|..+||+|+||||||||+++|+|.. +-.+..|.+.++|..... ...++.+ .++.+.+.+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 4689999999999999999999999932 113568999998843211 0112222 4677777777
Q ss_pred CCCcHHHHH--HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEE
Q 001154 915 PGLTVLESL--LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP--SIV 990 (1136)
Q Consensus 915 ~~ltv~e~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p--~il 990 (1136)
...+..|.+ .|.+.++.. +.++..++..+ +. .+..+|++. +| +++
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhhh
Confidence 777765554 333333311 11222222221 11 112345542 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCEEE-EEecCc-EEEEeCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELL-FMKRGG-ELIYAGPLG 1055 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l-~~~g~tii~~~H~~~~~~~~~~d~~~-~l~~gG-~~~~~g~~~ 1055 (1136)
++|||+.++|+......++.++.+ ...|.||+ +|... ++.+.||++. +|. .| +.++.|+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCC
Confidence 999999999999999999999988 66677864 99865 5778899998 776 47 777777664
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=1.3e-09 Score=122.51 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=50.4
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE---CCccCCCCCC---CceEEEEeccCC-----------
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP---PRTSAYVSQQDW----------- 219 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 219 (1136)
.+.+|++++|+|||||||||||++|+|...+. +|+|.+ +|.++..... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999998876 999999 8887654321 135799999874
Q ss_pred -----CCCCCCHHHHHHHh
Q 001154 220 -----QVAEMTVRETLDFA 233 (1136)
Q Consensus 220 -----~~~~lTV~E~l~f~ 233 (1136)
++|++|+ ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788888 888775
No 265
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=6.8e-09 Score=119.24 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=67.8
Q ss_pred EEEEcCCCCChhHHHHHHHh-hhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCC
Q 001154 164 TLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG-~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 241 (1136)
++|.||||+|||||+++|+| .+.+. .|.+.++|.+..... ....++|++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 45554 799999987654321 23567888887643111000 00000
Q ss_pred chhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHH
Q 001154 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321 (1136)
Q Consensus 242 ~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al 321 (1136)
. ..+...++.+......+..+ .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 00111222211110001110 3566 7
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 001154 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1136)
Q Consensus 322 ~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1136)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 88999999999999 99999999999998753 3455665666543
No 266
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.71 E-value=3.5e-12 Score=134.51 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 979 IAV-ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 979 ia~-aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +.++|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888889999999999999999988876542 2335621 4689988775
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.67 E-value=3e-09 Score=118.84 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=44.4
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE---CCccCCCCCC-Cce-EEEEeccCCCCC----CCCH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP-PRT-SAYVSQQDWQVA----EMTV 226 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 226 (1136)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 556789999999999999999999999988765 899998 7876543221 112 699999986554 6899
Q ss_pred HHHHH
Q 001154 227 RETLD 231 (1136)
Q Consensus 227 ~E~l~ 231 (1136)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
No 268
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.67 E-value=8.6e-11 Score=134.23 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=91.4
Q ss_pred CceEEEeeeEEEEECC-------cEEEEEccCCCChhHHHhcccCCCCC--ceeEEEEEEcCccCCh---hcccceEEEe
Q 001154 840 DRLQLLVNVTGAFRPG-------VLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ETFARISGYC 907 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv 907 (1136)
++..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3445677788877776 78999999999999999999985411 1345655554433211 1123568999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhhcCCCcc--cHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 908 EQNDIHSPGLTVLESLLFSAWLRLPSEI--ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 908 ~Q~~~~~~~ltv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
+|.+.+.+ ++.|++........ .++ ......+.+++.+..+++.. +... +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 99877665 78888754322111 010 01111222333444344433 2222 247999999998655
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
.+||+.+...+.+.|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888899999988764
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=2.2e-09 Score=119.92 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChh-cccce-EEEeccCCCCCC----CCcHHHHH
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE-TFARI-SGYCEQNDIHSP----GLTVLESL 923 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~Q~~~~~~----~ltv~e~l 923 (1136)
.+|++++|+||||||||||+|+|+|... +..|+|.+ +|...+.. ...+. .||++|.+.+.+ .+|+ |++
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 4799999999999999999999999765 46899988 77654321 12222 799999987765 6789 888
Q ss_pred H--HHhh--h----cCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 001154 924 L--FSAW--L----RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975 (1136)
Q Consensus 924 ~--~~~~--l----r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 975 (1136)
. |... + +...-....+....++++++.+++.+.+.... ..++.|++|
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 3 3311 1 11100011122345788999999876432221 146677766
No 270
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.62 E-value=1.3e-11 Score=136.94 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=92.9
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---cccceEEEeccCC-CCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQND-IHSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~l 917 (1136)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 34667888888899 99999999999999999999654 26899999765321 2234567777764 455666
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
++.|++.+.+..+.. . ... .+....+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~~-----~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRSD-----R----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccCC-----C----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 666666532211100 0 000 0112222222 369999999999999999999975 99864
Q ss_pred ------------CCCHHHHHHHHHHH
Q 001154 998 ------------GLDARAAAIVMRTV 1011 (1136)
Q Consensus 998 ------------gLD~~~~~~i~~~l 1011 (1136)
-.|...+..|++.+
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666666665543
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.61 E-value=3.9e-10 Score=127.18 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=58.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhh
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~l 929 (1136)
.+|+++||+||||||||||+++|+|.....+.+|+|.+ ||...... .++.+|++ |...+.+.+|+.+++.+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 89999999999999999999999996431023688999 88765432 23457888 777777888999998876544
Q ss_pred c
Q 001154 930 R 930 (1136)
Q Consensus 930 r 930 (1136)
+
T Consensus 156 ~ 156 (308)
T 1sq5_A 156 K 156 (308)
T ss_dssp T
T ss_pred h
Confidence 3
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.60 E-value=8.7e-09 Score=111.72 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHH-------HHHhcCEEEEEec
Q 001154 977 LTIAVELV--ANPSIVFMDEPTSGL--DARAAAIVMRTVRNIV-NTGRTIVCTIHQPSID-------IFESFDELLFMKR 1044 (1136)
Q Consensus 977 l~ia~aL~--~~p~illLDEPTsgL--D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~-------~~~~~d~~~~l~~ 1044 (1136)
+..++.++ .+|+++++|+|++.+ |+.....++..+.+++ +.|.|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 5544455555555554 5699999999976521 3466899999964
No 273
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.59 E-value=1.6e-08 Score=119.33 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=48.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~ 204 (1136)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.+.|. +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 3579999999999 999999999999999999999999886 8999999987654
No 274
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.59 E-value=4.7e-08 Score=116.26 Aligned_cols=177 Identities=13% Similarity=0.160 Sum_probs=103.1
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-EEEEcCccCChhcc-cceEEEeccCCCCCCCCcHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETF-ARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~-~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
.|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+........ .|..+... .... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-H
Confidence 45666777899999999999999999999998874321 012 23222221111111 01000000 0000 0
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGL 999 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgL 999 (1136)
. ++.. ..... ....+.++++.++..++. +.. ..++|.+|.+ ..++.++ .+|+++++|+++...
T Consensus 262 ~------l~~g-~l~~~-~~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRTG-KLTPE-DWGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHTS-CCCHH-HHHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------HhcC-CCCHH-HHHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 1110 11211 223344555555433322 111 1368999876 5677776 679999999999877
Q ss_pred C--------HHHHHHHHHHHHHHHhC-CCEEEEEec---------C--CcH-------HHHHhcCEEEEEecC
Q 001154 1000 D--------ARAAAIVMRTVRNIVNT-GRTIVCTIH---------Q--PSI-------DIFESFDELLFMKRG 1045 (1136)
Q Consensus 1000 D--------~~~~~~i~~~l~~l~~~-g~tii~~~H---------~--~~~-------~~~~~~d~~~~l~~g 1045 (1136)
+ ......+.+.|+.++++ |.+||+++| + |.. .+...+|.+++|.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 4 23446777888888754 999999999 2 431 355679999999864
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.59 E-value=4.4e-08 Score=109.75 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=77.9
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1136)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eq---- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQ---- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHH----
Confidence 45567899999999999999999999999998653 566766543210 00 00011
Q ss_pred hhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhh
Q 001154 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313 (1136)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkk 313 (1136)
...+++.+|++. +...|||+.+
T Consensus 151 ------------------------------------------------L~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 151 ------------------------------------------------LKIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp ------------------------------------------------HHHHHHHHTCEE----------ECCSTTCCHH
T ss_pred ------------------------------------------------HHHHHHHcCCcE----------EecCCccCHH
Confidence 122334455542 1247899999
Q ss_pred HH---HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 314 RL---TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 314 Rv---sia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
++ ++++++..+++++++|+|.. ......+++.|+.+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3444556666655543
No 276
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.58 E-value=1.4e-08 Score=114.02 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=62.6
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChhc--c-cceEEEeccCCC--------------
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQET--F-ARISGYCEQNDI-------------- 912 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~Q~~~-------------- 912 (1136)
.+|++++|+||||||||||+++|+|... +.+|+|.+ +|.++.... + .+.+||++|.+.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 4689999999999999999999999876 46899999 887654311 1 135799999875
Q ss_pred --CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccc
Q 001154 913 --HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGA 959 (1136)
Q Consensus 913 --~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~ 959 (1136)
++|.+|+ ||+.|....+ . .+....+.++++.++|. +..+.
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~-~-----~e~~~~v~~~l~~~~L~~~~~~~ 287 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNH-V-----DEPECGVKEAVENGEIAESRYEN 287 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCS-S-----SCSSCHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcC-C-----CCCCcHHHHHHHcCCCCHHHHHH
Confidence 4788888 8888753211 1 11234578899999995 44444
No 277
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.54 E-value=1.8e-08 Score=112.87 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=72.6
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhh
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~ 928 (1136)
++..++|++++|+|+|||||||++..|++... ...|.|.+.+.+... + ...|.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r-----------------~--~a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFR-----------------A--AAIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTC-----------------H--HHHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcccccc-----------------H--HHHHH------
Confidence 34457899999999999999999999998643 123566665433210 0 01111
Q ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 001154 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL---TIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1136)
Q Consensus 929 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl---~ia~aL~~~p~illLDEPTsgLD~~~~~ 1005 (1136)
...+.+.+++.-+ ...|+|+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1223344444321 24689999999 89999999999999999974 33444
Q ss_pred HHHHHHHHH
Q 001154 1006 IVMRTVRNI 1014 (1136)
Q Consensus 1006 ~i~~~l~~l 1014 (1136)
.+++.++++
T Consensus 203 ~l~~eL~~l 211 (306)
T 1vma_A 203 NLMEELRKV 211 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.53 E-value=1.5e-07 Score=105.08 Aligned_cols=143 Identities=14% Similarity=0.141 Sum_probs=87.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 238 (1136)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..++.|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998642 34 24677776652 3455555543211
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHH
Q 001154 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318 (1136)
Q Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia 318 (1136)
.+|++.. + ..+ +..-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122210 0 012 223355555
Q ss_pred HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc-cCCeEEEE-EecChhHHHhhcCeEEEEcCCeEEEe
Q 001154 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA-LDGTTVIS-LLQPAPEAYELFDDVILLSEGQIVYQ 389 (1136)
Q Consensus 319 ~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~-~~~t~ii~-~~q~~~~~~~~~D~vilL~~G~iv~~ 389 (1136)
+ +.+++++++| |+|+|+.....+.+..+-+... ...++++. ..|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999987665444433322100 11223332 35666778787887766677777753
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.53 E-value=3.3e-07 Score=99.18 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.1
Q ss_pred CCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCeEEEEEecChhH--------HHhhcCeEEEEcC
Q 001154 323 GPARVLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE--------AYELFDDVILLSE 383 (1136)
Q Consensus 323 ~~p~vlllDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--------~~~~~D~vilL~~ 383 (1136)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6555566667777776655555554 5565544 4678899999964
No 280
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.53 E-value=1.5e-07 Score=105.14 Aligned_cols=128 Identities=18% Similarity=0.101 Sum_probs=83.6
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
+++++. +|++++++|+||+||||++..|++... ...|.|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 477777 899999999999999999999999643 12466776655321100 00 000
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-TSGLDARAA 1004 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-TsgLD~~~~ 1004 (1136)
..+.+..++.-+... ...+..+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 011223344322110 11244556788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEe
Q 001154 1005 AIVMRTVRNIVNTGRTIVCTI 1025 (1136)
Q Consensus 1005 ~~i~~~l~~l~~~g~tii~~~ 1025 (1136)
..+.+..+.+. ...+++++.
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88887777653 344544443
No 281
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.52 E-value=8e-09 Score=127.35 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=99.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccC----------
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD---------- 218 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d---------- 218 (1136)
.++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+.. ...++|+++..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~--~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDEN--MPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTT--SCEEEEEETTHHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccccc--CCcEEEEecchHHHHHHHHHH
Confidence 5788999999999999999999999999999999998764 248888888766543 34588888753
Q ss_pred ------------CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHH
Q 001154 219 ------------WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 286 (1136)
Q Consensus 219 ------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl 286 (1136)
+.+..+++.+|+... .|...+. +.+ ... ....-
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~~~--------------------~~v---------~~~-----~~~~~ 168 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRTKA--------------------PFI---------DAT-----GAHAG 168 (604)
T ss_dssp HHHHHTCC-----------CCCEEEEC-CTTCSSC--------------------CEE---------ECT-----TCCHH
T ss_pred hhccchhhhhhcccccccccccceeec-cccCCCC--------------------CEE---------EcC-----CCCHH
Confidence 222333333333111 0000000 000 000 00011
Q ss_pred HHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 287 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 287 ~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 169 ~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 169 ALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 1223211111 1124699999999999999999999999999998 898888877777763
No 282
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.52 E-value=2.2e-07 Score=106.25 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcH-----
Q 001154 975 KRLTIAVELVAN--PSIVFMDEPTSGL----------DA---RAAAIVMRTVRNI----VNTGRTIVCTIHQPSI----- 1030 (1136)
Q Consensus 975 qrl~ia~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~l----~~~g~tii~~~H~~~~----- 1030 (1136)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555555 3459999999996431
Q ss_pred ----------HHHHhcCEEEEEecCcEEEEeCC
Q 001154 1031 ----------DIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1031 ----------~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 13456888888875 44444443
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.49 E-value=1e-08 Score=108.04 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.7
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCCCHHHHHH
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2455554433221 2345789999887777777766654
Q ss_pred H
Q 001154 232 F 232 (1136)
Q Consensus 232 f 232 (1136)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.47 E-value=3.1e-07 Score=109.12 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=108.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 456789999899999999999999999999999999876321 22 134555432 333
Q ss_pred HHHHHHh-hhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 227 RETLDFA-GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 227 ~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
.+...-. +...+.. .. .+ ..+...+.+. .++...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~--~~---~l-----~~g~l~~~~~---------------~~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNIN--AQ---NL-----RTGKLTPEDW---------------GKLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCC--HH---HH-----HTSCCCHHHH---------------HHHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCC--HH---HH-----hcCCCCHHHH---------------HHHHHHHHHHhcCCEE---EEC--CC
Confidence 3322110 0000100 00 00 0011111111 1233344444433221 111 13
Q ss_pred CCChhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHhccCCeEEEEEec---------
Q 001154 306 GISGGQKKRLTTGELLV--GPARVLFMDEISNGLDS--------STTYQIIKYLKHSTRALDGTTVISLLQ--------- 366 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~--~~p~vlllDEptsgLD~--------~t~~~i~~~l~~~~~~~~~t~ii~~~q--------- 366 (1136)
++|++|.+ +.++.+. .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 58999987 5566665 68999999999997742 33467788899888876555544 666
Q ss_pred ---Ch-------hHHHhhcCeEEEEcCCeE
Q 001154 367 ---PA-------PEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 367 ---~~-------~~~~~~~D~vilL~~G~i 386 (1136)
|. ..+...+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987653
No 285
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.45 E-value=2.5e-08 Score=104.06 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001154 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1136)
Q Consensus 975 qrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1014 (1136)
+.+.+|++|+.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999988653
No 286
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.44 E-value=1.9e-07 Score=104.24 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~ 932 (1136)
.+|++++|+|+||+||||++..|++.... ..| +.++++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999985431 123 12455655442 234455543221
Q ss_pred CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001154 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1136)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1136)
+..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 01222 22344444 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCCcHHHHHhcCEEEEEecCcEEEE
Q 001154 1013 NIV---NTGRTIVC-TIHQPSIDIFESFDELLFMKRGGELIY 1050 (1136)
Q Consensus 1013 ~l~---~~g~tii~-~~H~~~~~~~~~~d~~~~l~~gG~~~~ 1050 (1136)
-+. ..+.++|+ ++|... ++.+.++++..+..+| ++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEE
Confidence 322 11334444 378753 4556566655555444 444
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.43 E-value=1.3e-06 Score=97.61 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=79.3
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQL- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHH-
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHH-
Confidence 678888 99999999999999999999999998653 6778776543210 0 000 000
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
..+.+..|++.... + .+-.-.+
T Consensus 146 ---------------------------------------------------~~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 146 ---------------------------------------------------RLLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ---------------------------------------------------HHHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ---------------------------------------------------HHhcccCCeEEEEc---C----CCCCHHH
Confidence 00112234432210 0 0122334
Q ss_pred hhHHHHHHHHhCCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001154 312 KKRLTTGELLVGPARVLFMDEI-SNGLDSSTTYQIIKYLKHS 352 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEp-tsgLD~~t~~~i~~~l~~~ 352 (1136)
-+|.+++++...+++++++|+| +.|+|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988889999999999 9999998877777766643
No 288
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.43 E-value=3.1e-09 Score=126.33 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=92.3
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccC--CCCCceeEEEEEEcCccCChhcccceEEEeccCCCCC-CC-CcHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-PG-LTVLES 922 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~-ltv~e~ 922 (1136)
.+++.+.++..+.|.|++||||||++++|.. .... ..|++.+.+.+.+...+.. | ..-+.+. +- -.+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 5777888899999999999999999999865 1111 1133333333322111111 0 0001110 00 112221
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEE
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL----------TIAVELVANPS-IVF 991 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl----------~ia~aL~~~p~-ill 991 (1136)
... ++ ....+.+++ .+.+...++.++.+..... ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~---L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANA---LR----WCVNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHH---HH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHH---HH----HHHHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 111 11 011223333 3677888877665421000 014677877642 35566677898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVN----TGRTIVCTIHQPS 1029 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~ 1029 (1136)
+||+++-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 3455666666543 2779999999998
No 289
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.40 E-value=7.3e-11 Score=131.24 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=80.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~ 915 (1136)
....+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ....+.+++++|... ..+
T Consensus 60 ~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3445788999999999 89999999999999999998653 4778888764321 112234567777643 456
Q ss_pred CCcHHHHHHHHhhhcCCC-cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 916 GLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
.+++.|++...+..+... .....+....+.+++ ..|||||+||+.|++++..+|++
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 677777774322111100 000111122222222 24899999999999999999876
No 290
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=9.2e-11 Score=128.51 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=81.7
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCC-CCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQND-IHSPG 916 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~-~~~~~ 916 (1136)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|.. ...+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 345678899999999 89999999999999999998653 4778888754321 11123456677764 24566
Q ss_pred CcHHHHHHHHhhhcCCC-cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+++.|++...+..+... .....+..+.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 77777774322111100 001111222223322 14789999999999999999986 4554
Q ss_pred C
Q 001154 996 T 996 (1136)
Q Consensus 996 T 996 (1136)
.
T Consensus 171 l 171 (254)
T 1ixz_A 171 L 171 (254)
T ss_dssp G
T ss_pred H
Confidence 3
No 291
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.37 E-value=3.3e-08 Score=116.71 Aligned_cols=52 Identities=21% Similarity=0.127 Sum_probs=46.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1136)
..+|+++|++|++ +++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 3468899999999 9999999999999999999999766 45799999998653
No 292
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.36 E-value=1.4e-09 Score=120.76 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=54.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCC-CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1136)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 5799999999999 99999999999999999999874 6889888865432211 123455565532 34455
Q ss_pred CHHHHHH
Q 001154 225 TVRETLD 231 (1136)
Q Consensus 225 TV~E~l~ 231 (1136)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 5555553
No 293
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.35 E-value=7e-08 Score=100.58 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.3
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4433445688999999999999999 999999999999998865
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.35 E-value=1.6e-08 Score=106.49 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=43.3
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHHHH
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
|+++.+|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 46678999999999999999999999999743 24444433221 1124457888887655444444333
No 295
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.34 E-value=5.9e-09 Score=128.52 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=99.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCC------
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI------ 912 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~------ 912 (1136)
++...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++||++...
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHH
Confidence 35566788999999999999999999999999999999976532 24788888876432 3445788876431
Q ss_pred ----------------CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 001154 913 ----------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1136)
Q Consensus 913 ----------------~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 976 (1136)
.+..+++.+|+.....-..+...-.. . .....++++..+..... ..++|+|++|+
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~ 191 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHER 191 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGG
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccc
Confidence 11111111111110000000000000 0 00011122211111111 13689999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1136)
Q Consensus 977 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1013 (1136)
+..++...+++.+|||||... |++.....+.+.|.+
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999998 899988888888874
No 296
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.33 E-value=2e-09 Score=117.72 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=52.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccC-CCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD-WQVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 224 (1136)
.+++++++.+++| ++|+||||||||||+++|+|.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5799999999999 99999999999999999999874 6888888865432111 12244555543 234445
Q ss_pred CHHHHH
Q 001154 225 TVRETL 230 (1136)
Q Consensus 225 TV~E~l 230 (1136)
++.|++
T Consensus 112 ~~~Dei 117 (254)
T 1ixz_A 112 VFIDEI 117 (254)
T ss_dssp EEEETH
T ss_pred EEehhh
Confidence 555555
No 297
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=4.9e-07 Score=103.01 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=28.7
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+-+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999999987643
No 298
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.26 E-value=1.1e-06 Score=100.31 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988888654
No 299
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.22 E-value=5.6e-07 Score=94.16 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001154 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1136)
Q Consensus 977 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1136)
...|++|+.+|.++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999 99999999999998887653
No 300
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.21 E-value=6.9e-08 Score=103.22 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-----------CCceEEEEecc
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----------PPRTSAYVSQQ 217 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-----------~~~~~~yv~Q~ 217 (1136)
++.+.+ ++++|+|||||||||||++|+|.+.|. +|+|.++|.++.... .+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999886 899999998762211 13468898884
No 301
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.21 E-value=3e-07 Score=109.28 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=87.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHh-hhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCC--CHHHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM--TVRET 229 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG-~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 229 (1136)
.+++.+..+..++|.|++||||||+|++|.. ++... ..|+|.+.+.+..... .+.-..+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhh--------hhhhccCCcccceeecC
Confidence 3778888999999999999999999999875 33211 1456655444332110 0100011221 12122
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccc--ccccCccCCCC
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD--TLVGDEMLKGI 307 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~d--t~vg~~~~~~L 307 (1136)
...+.+... ....++ +.+ ...++..|+.+..+ ..+. ..+
T Consensus 229 ~~~a~~~L~-----~~~~Em-----------------------------erR-~~ll~~~Gv~~i~~yn~~~~----~~~ 269 (512)
T 2ius_A 229 MKDAANALR-----WCVNEM-----------------------------ERR-YKLMSALGVRNLAGYNEKIA----EAD 269 (512)
T ss_dssp HHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHTTCSSHHHHHHHHH----HHH
T ss_pred HHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHcCCccHHHHHHHHH----HHh
Confidence 211111000 000111 122 24566677665322 1121 247
Q ss_pred ChhhhhHH----------HHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHhccC--CeEEEEEecChh
Q 001154 308 SGGQKKRL----------TTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTRALD--GTTVISLLQPAP 369 (1136)
Q Consensus 308 SGGqkkRv----------sia~al~~~p~-vlllDEptsgLD~~t~~~i~~~l~~~~~~~~--~t~ii~~~q~~~ 369 (1136)
||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+..+++... +..++..+|...
T Consensus 270 s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 270 RMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99998863 24556677887 89999999998843 3445555555543221 334444555443
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.19 E-value=3.8e-07 Score=98.15 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=23.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHH-hhhCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA-GRLGH 187 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~La-G~l~~ 187 (1136)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35788999999999999999999999999999999 98743
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.14 E-value=4e-07 Score=97.91 Aligned_cols=38 Identities=32% Similarity=0.261 Sum_probs=22.9
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhccc-CCCC
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-GRKT 880 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~~~ 880 (1136)
+..+++||++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567999999999999999999999999999999 9754
No 304
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.05 E-value=9.1e-07 Score=100.79 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
-+++|+++.|.||+|+|||||+..+++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999874
No 305
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.04 E-value=1.9e-06 Score=98.95 Aligned_cols=158 Identities=17% Similarity=0.045 Sum_probs=86.6
Q ss_pred CCeE-EEEEcCCCCChhHHHHHHHhhhCCC--------cceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH---H
Q 001154 160 PSRL-TLLLGPPSSGKTTLLLALAGRLGHH--------LQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV---R 227 (1136)
Q Consensus 160 ~G~~-~~llGp~GsGKSTLL~~LaG~l~~~--------~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV---~ 227 (1136)
.|-. ++|+|+||||||||+++|+|..... ...+|.|.++|.++.- -.+.|++.+.+. ..| +
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l---~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML---VDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE---EECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE---EeCCCchhcCCH----HHHHHHH
Confidence 3444 8999999999999999999975310 1357899998854311 112344443221 111 1
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCch--hHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED--LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
.++.........-.-++ . .+++ .+. ....+..+++.+++.+..--.|++. ..
T Consensus 250 ~tl~~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~D 303 (364)
T 2qtf_A 250 VTLSEAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-ID 303 (364)
T ss_dssp HHHHGGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GG
T ss_pred HHHHHHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CC
Confidence 12211100000000000 0 0000 000 0123566788888765543344543 34
Q ss_pred CCChhhhhHHHHH----HHH-hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 306 GISGGQKKRLTTG----ELL-VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 306 ~LSGGqkkRvsia----~al-~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
-+|+|+++|+.++ +.+ ..++++ +|+|++|......+.+.|.+...
T Consensus 304 l~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 304 KINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4788888888887 555 334444 89999999999999998877654
No 306
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.04 E-value=1.1e-07 Score=101.75 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=39.3
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----------hcccceEEEeccC
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCEQN 910 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 910 (1136)
++++.+ ++++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 8999999999999999999999765 347888888876521 1134568888874
No 307
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.03 E-value=2.4e-07 Score=97.29 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=48.4
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCCHHHHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLDF 232 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 232 (1136)
...++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .....++++|++...+.+++.+++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 455789999999999999999999999976 77888886653210 01235777787655555666666644
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.02 E-value=3.8e-06 Score=99.46 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=39.5
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCC----------CCCCHHHHHHHHHHHHHHHh--ccCCeEEEEEecChh
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEIS----------NGLDSSTTYQIIKYLKHSTR--ALDGTTVISLLQPAP 369 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEpt----------sgLD~~t~~~i~~~l~~~~~--~~~~t~ii~~~q~~~ 369 (1136)
|+++.|..+++|....|.|||+||+- .|.|......+.+.|..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 57788888999999999999999993 46666655555666655432 123456666666543
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.01 E-value=2.9e-06 Score=100.49 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 001154 971 TEQRKRLTIAVELVANPSIVFMDEP----------TSGLDARAAAIVMRTVRNIV----NTGRTIVCTIHQPS 1029 (1136)
Q Consensus 971 gGqrqrl~ia~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~l~----~~g~tii~~~H~~~ 1029 (1136)
+++++|-.++.|....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777776653 24778999999975
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.01 E-value=2.5e-07 Score=97.22 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=37.8
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh--cccceEEEeccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE--TFARISGYCEQN 910 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~ 910 (1136)
...++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 445789999999999999999999999753 6788888654321 111234666664
No 311
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.98 E-value=3.9e-06 Score=96.38 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=84.5
Q ss_pred EEEEEccCCCChhHHHhcccCCCCC---------ceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH---HHHH
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKTG---------GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL---ESLL 924 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~---e~l~ 924 (1136)
.++|+|++|||||||++.|+|.... ++..|.+.++|.++ .+....|++.+.+.. .+. ..+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~~----lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPPQ----IVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCGG----GHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCHH----HHHHHHHHHH
Confidence 3899999999999999999996431 14568899988643 122334555443211 111 1111
Q ss_pred HH--hh--hc--CCCccc--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 001154 925 FS--AW--LR--LPSEIE--LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA----VEL-VANPSIVF 991 (1136)
Q Consensus 925 ~~--~~--lr--~~~~~~--~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia----~aL-~~~p~ill 991 (1136)
.. +. +. -..+.. .......+.++++.+++.+..--.+.. ....+|+++++++.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 00 00 00 001111 122233456777777665433111111 1234687888888877 555 334444
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
+|+|++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987653
No 312
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.94 E-value=4.6e-06 Score=85.82 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.9
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~ 188 (1136)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6788999999 99999999999999999999988653
No 313
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.92 E-value=7.5e-06 Score=85.52 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=33.2
Q ss_pred hHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001154 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353 (1136)
Q Consensus 313 kRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~ 353 (1136)
+....|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 128 ~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 128 VPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999 99999999999998887543
No 314
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.91 E-value=8.9e-06 Score=91.95 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=88.0
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
...-|+.+.+-++||++++|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34567777778999999999999999999999999865421 11 13455442 3454
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.+...= + + + ....+.+....+ ..
T Consensus 87 ~ql~~R---l---------l---s----------------------------------~~~~v~~~~l~~--------g~ 109 (338)
T 4a1f_A 87 EQLALR---A---------L---S----------------------------------DLTSINMHDLES--------GR 109 (338)
T ss_dssp HHHHHH---H---------H---H----------------------------------HHHCCCHHHHHH--------TC
T ss_pred HHHHHH---H---------H---H----------------------------------HhhCCCHHHHhc--------CC
Confidence 443210 0 0 0 000000111000 14
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
||+++.+|++.|...+.++++++.|+|... ..+|...++.+.+..++..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999988889999999998643 33566666666554425555555 77777754
No 315
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.85 E-value=5.4e-06 Score=104.60 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcHHHHHhcCEE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCT-IHQPSIDIFESFDEL 1039 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~-~H~~~~~~~~~~d~~ 1039 (1136)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.++..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~ 262 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDA 262 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCC
Confidence 479999999999999999999999999996 999887766666665554445677775 88764 466666643
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.83 E-value=5.4e-06 Score=87.02 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++++|++++|+||||||||||+++|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
No 317
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.81 E-value=3.8e-05 Score=88.14 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMD-EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI--HQP 1028 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLD-EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~--H~~ 1028 (1136)
..+|++++|++. +.+...++-++++| +|++|+|......+.+.+..... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 358999998776 55555677788999 99999999988888877776543 77888888 764
No 318
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.81 E-value=3.5e-06 Score=94.94 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=60.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC---------CC---CceEEEE-ec
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---------VP---PRTSAYV-SQ 216 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~---------~~---~~~~~yv-~Q 216 (1136)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+.... .. +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998654 78898877665321 01 3457888 67
Q ss_pred cCCCCCCCCHHHHHHHh
Q 001154 217 QDWQVAEMTVRETLDFA 233 (1136)
Q Consensus 217 ~d~~~~~lTV~E~l~f~ 233 (1136)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555667776553
No 319
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=9.1e-06 Score=85.09 Aligned_cols=41 Identities=27% Similarity=0.105 Sum_probs=25.7
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
....+++|||+.+++|++++|+|||||||||+.+.|++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999999998873
No 320
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.76 E-value=6.2e-07 Score=106.85 Aligned_cols=49 Identities=37% Similarity=0.532 Sum_probs=42.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~ 204 (1136)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4788999999999 99999999999999999999874 6788888876543
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.76 E-value=7.4e-06 Score=84.83 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998863
No 322
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.71 E-value=1e-05 Score=91.39 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=77.4
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFS 926 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~ 926 (1136)
.+.+-+++|+++.|.|++|+|||||+.-++.... . .|. .+.|+.= .++..+..
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g~---------~Vl~fSl------Ems~~ql~--- 90 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DDR---------GVAVFSL------EMSAEQLA--- 90 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TTC---------EEEEEES------SSCHHHHH---
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cCC---------eEEEEeC------CCCHHHHH---
Confidence 4444578999999999999999999988875321 0 111 1223221 22322221
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
.+.......+.+..+.+ ..||.++.+|+..|...+.++++.+.|+|...+| .
T Consensus 91 ---------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~ 142 (338)
T 4a1f_A 91 ---------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----Q 142 (338)
T ss_dssp ---------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----H
T ss_pred ---------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----H
Confidence 11111111112222221 1599999999999999999999999999875433 5
Q ss_pred HHHHHHHHHh-C-CCEEEEEec
Q 001154 1007 VMRTVRNIVN-T-GRTIVCTIH 1026 (1136)
Q Consensus 1007 i~~~l~~l~~-~-g~tii~~~H 1026 (1136)
|...++++.+ . |..+|++-|
T Consensus 143 i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 143 IRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEec
Confidence 5666666654 4 678887765
No 323
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.69 E-value=2.8e-05 Score=98.11 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=56.0
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 3489999999999999999999999999996 9998877777776654432 12345555677777777788753
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.67 E-value=3.3e-06 Score=88.61 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=42.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEE--EECCccCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI--TYNGHGFK 203 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I--~~~G~~~~ 203 (1136)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445666777778999999999999999999999999985 2 5776 77775543
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.64 E-value=1.3e-05 Score=84.04 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.2
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.63 E-value=4.6e-06 Score=90.98 Aligned_cols=66 Identities=21% Similarity=0.119 Sum_probs=44.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEE--------ECCccCCCCC----CCceEEEEecc
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT--------YNGHGFKEFV----PPRTSAYVSQQ 217 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~--------~~G~~~~~~~----~~~~~~yv~Q~ 217 (1136)
++++.+ ++|++++|+|||||||||++++|+.+++-....+|.|. .+|.++.... ..+.+++++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 78999999999999999999999933322223489998 8887764321 12457788875
Q ss_pred C
Q 001154 218 D 218 (1136)
Q Consensus 218 d 218 (1136)
+
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 4
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.60 E-value=6.6e-06 Score=89.31 Aligned_cols=40 Identities=35% Similarity=0.423 Sum_probs=37.1
Q ss_pred eeeeeceeEEEeC---CeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 148 LTILDDLSGIIRP---SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 148 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.++|+|+|+.|++ |+.++|+|++||||||+.++|++.+..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4689999999999 999999999999999999999998753
No 328
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.58 E-value=1.6e-05 Score=98.62 Aligned_cols=132 Identities=16% Similarity=0.091 Sum_probs=71.6
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHHHHHHHH
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFS 926 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~ 926 (1136)
+.+++|..++|+|++|+|||||++.|++........|+| .+|....+ ...++.+++..|...+...
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~---------- 72 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR---------- 72 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET----------
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC----------
Confidence 456789999999999999999999999643211134555 45543221 1122333333332211100
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
.....++..|+-..++ .......-..+.-++++| |+.|+++.+...
T Consensus 73 ----------------------------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 73 ----------------------------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp ----------------------------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred ----------------------------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 0000111112211222 112222335677889999 999999887633
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcH
Q 001154 1007 VMRTVRNIVNTGRTIVCTIHQPSI 1030 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~~~H~~~~ 1030 (1136)
+ +.+.+.+.++|++.|..+.
T Consensus 119 -~---~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 -W---TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp -H---HHHHHTTCCEEEEEECGGG
T ss_pred -H---HHHHHccCCEEEEecCCch
Confidence 2 3333458889999997653
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.56 E-value=9.3e-08 Score=113.92 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=51.7
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCc
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQNDI-HSPGLT 918 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~lt 918 (1136)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+++++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3566788888888 89999999999999999998653 46788888654221 11223455666543 345555
Q ss_pred HHHHHH
Q 001154 919 VLESLL 924 (1136)
Q Consensus 919 v~e~l~ 924 (1136)
+.|++.
T Consensus 128 ~IDEId 133 (499)
T 2dhr_A 128 FIDEID 133 (499)
T ss_dssp EEECGG
T ss_pred EEehHH
Confidence 666553
No 330
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.55 E-value=7.1e-06 Score=89.45 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=45.1
Q ss_pred ECCcEEEEEccCCCChhHHHhccc---CCCCCceeEEEEE--------EcCccCCh----hcccceEEEeccCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIY--------ISGYPKRQ----ETFARISGYCEQND 911 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 911 (1136)
++|++++|+|||||||||++++|+ |... +.+|.++ .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 8765 5678888 78876532 23456678888753
No 331
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=3.9e-05 Score=78.94 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=29.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
.+|++++|+||||||||||+++|++.+++ ...|.|.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~--~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD--RFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT--TEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc--cEEEeeec
Confidence 36899999999999999999999998753 13565544
No 332
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.53 E-value=3e-06 Score=92.06 Aligned_cols=38 Identities=34% Similarity=0.511 Sum_probs=34.8
Q ss_pred ceEEEeeeEEEEEC---CcEEEEEccCCCChhHHHhcccCC
Q 001154 841 RLQLLVNVTGAFRP---GVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
...+|+|+|+.|++ |++++|+|++||||||+.++|++.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999 999999999999999999999974
No 333
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.51 E-value=1.7e-05 Score=91.06 Aligned_cols=44 Identities=36% Similarity=0.328 Sum_probs=39.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
..+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999975 576655
No 334
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=2.6e-05 Score=81.54 Aligned_cols=38 Identities=32% Similarity=0.132 Sum_probs=23.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
....++||||.+++|++++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999999999999964
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.48 E-value=3.3e-05 Score=79.36 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=29.5
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+++++.+.+| +++|+||||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 3788899999 99999999999999999998743
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.46 E-value=1.6e-05 Score=83.61 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHH-HHHhcCEEEEEe
Q 001154 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID-IFESFDELLFMK 1043 (1136)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~-~~~~~d~~~~l~ 1043 (1136)
+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....+|.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 567888888888888877643222 3345566555555544432 356888888865311 245689888885
No 337
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.46 E-value=0.0004 Score=80.04 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=35.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 001154 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---TGRTIVCTIHQPS 1029 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~---~g~tii~~~H~~~ 1029 (1136)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888887766654 5789999999874
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.45 E-value=2.5e-05 Score=83.85 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=34.9
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccC
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~ 202 (1136)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445689999999999999999999999986 47788877653
No 339
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.45 E-value=0.00015 Score=81.53 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=32.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..-|+++.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44577777779999999999999999999998887543
No 340
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.42 E-value=1.3e-05 Score=90.30 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=39.2
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
++++++.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 357888889999999999999999999999998543 2246777766554
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.40 E-value=3.8e-05 Score=82.36 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=32.1
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
++|++++|+|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 68999999999999999999999986 36677877653
No 342
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.40 E-value=6.4e-05 Score=84.08 Aligned_cols=153 Identities=18% Similarity=0.265 Sum_probs=80.9
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~ 932 (1136)
+.| .++|+|++|+|||||++.|.|.... + ..+.+ ..+..+..|++.+++..+ ++.| .|
T Consensus 7 r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i---~~iD---------Tp 64 (301)
T 1ega_A 7 YCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQA---IYVD---------TP 64 (301)
T ss_dssp EEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEE---EEES---------SS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeE---EEEE---------Cc
Confidence 344 8999999999999999999986421 0 11222 122345567777654211 0000 01
Q ss_pred CcccHHHHHHHHHHHH-----HHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-H
Q 001154 933 SEIELETQRAFVEEVM-----ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDARA-A 1004 (1136)
Q Consensus 933 ~~~~~~~~~~~v~~~l-----~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgLD~~~-~ 1004 (1136)
. .... ......+.+ ..+.-.+..-..+. . ..+|.|++ .++..+. ..|.|+++ +.+|... .
T Consensus 65 G-~~~~-~~~~l~~~~~~~~~~~l~~~D~vl~Vvd--~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 65 G-LHME-EKRAINRLMNKAASSSIGDVELVIFVVE--G-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp S-CCHH-HHHHHHHHHTCCTTSCCCCEEEEEEEEE--T-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCH
T ss_pred C-CCcc-chhhHHHHHHHHHHHHHhcCCEEEEEEe--C-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccH
Confidence 0 0000 000111111 11111111111111 1 23898886 4566666 67889998 7899876 6
Q ss_pred HHHHHHHHHHHhC-CC--EEEEEecCCcHHHHHhcCEEE
Q 001154 1005 AIVMRTVRNIVNT-GR--TIVCTIHQPSIDIFESFDELL 1040 (1136)
Q Consensus 1005 ~~i~~~l~~l~~~-g~--tii~~~H~~~~~~~~~~d~~~ 1040 (1136)
..+.+.+.++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 6777888887653 43 5666666643 3555555543
No 343
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.40 E-value=3.5e-05 Score=79.67 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.6
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999654
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.38 E-value=4.2e-05 Score=85.87 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=41.7
Q ss_pred eeeeceeEEEeCCe------EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCC
Q 001154 149 TILDDLSGIIRPSR------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1136)
..|++++..+..++ +++|+||||||||||+++|++.+... ...| .++++++++.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~-~~~~----------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW-PDHP----------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS-TTCC----------------CEEEEEGGGGBCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCCC----------------eEEEEeecccccc
Confidence 35666666665555 99999999999999999999998631 0122 4678888876554
No 345
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.38 E-value=7.3e-05 Score=76.19 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
.+|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999875 55666653
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.36 E-value=5.8e-05 Score=79.20 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=37.7
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH--HhhcCeEEEEc
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA--YELFDDVILLS 382 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~--~~~~D~vilL~ 382 (1136)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++.. .++. ++.-.+...+. ...||.+++|.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~-vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPY-TLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSE-EEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCE-EEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999988887654333 3345566555555544321 2334 44333444443 56788887774
No 347
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.36 E-value=8.4e-05 Score=78.33 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=27.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998764
No 348
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.36 E-value=5.3e-05 Score=77.92 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI 890 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i 890 (1136)
+|++++|+||||||||||+++|++.... ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999986432 13455543
No 349
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.35 E-value=0.00044 Score=78.73 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=25.4
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999998876
No 350
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.35 E-value=0.00018 Score=82.58 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 001154 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIH 1026 (1136)
Q Consensus 969 LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H 1026 (1136)
.+..++++..+++..+.+|+++++.-..+..|... ....+.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 34456666665445 57777776
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.32 E-value=6.5e-05 Score=78.69 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=32.7
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999988543 566655443
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.31 E-value=0.00013 Score=76.69 Aligned_cols=45 Identities=29% Similarity=0.252 Sum_probs=37.2
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCC
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1136)
-.+++|++++|+|+||||||||++.|++.+. .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3567899999999999999999999998652 26788998876653
No 353
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.30 E-value=0.00048 Score=77.80 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 001154 973 QRKRLTIAVELV---ANPSIVFMDEPTSGLDA--------RA----AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1136)
Q Consensus 973 qrqrl~ia~aL~---~~p~illLDEPTsgLD~--------~~----~~~i~~~l~~l~~-~g~tii~~~H~ 1027 (1136)
+.+.+..+++++ .+|+++++|+.++-.+. .. ...+++.|+++++ .+.+||++.|-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 346677788887 57899999999976532 11 2344555556554 48999999885
No 354
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.29 E-value=0.0001 Score=76.67 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.4
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999865
No 355
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.24 E-value=0.0024 Score=70.85 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++.-++|.||||+|||||+++|++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
No 356
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.24 E-value=0.00099 Score=73.97 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---HHH
Q 001154 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR----------AAAIVMRTVRNIVN----TGRTIVCTIHQPS---IDI 1032 (1136)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~l~~----~g~tii~~~H~~~---~~~ 1032 (1136)
+++++.+..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||++|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998766532 22233333333211 2356788888753 233
Q ss_pred HHhcCEEEE
Q 001154 1033 FESFDELLF 1041 (1136)
Q Consensus 1033 ~~~~d~~~~ 1041 (1136)
...|++.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445555433
No 357
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.0003 Score=80.68 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEE
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMD-EISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllD-EptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~ 364 (1136)
.+|+|+++++. +.+...++-++++| ++.+|+|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55556777889999 99999999988888877776432 34444433
No 358
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.18 E-value=0.00019 Score=80.72 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=76.9
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHH
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~ 924 (1136)
|+++.+-+++|+++.|.|++|+|||||+..++.... . .| ..+.|+.- .++..+...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~------~g---------~~vl~~sl------E~s~~~l~~ 113 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---D------ND---------DVVNLHSL------EMGKKENIK 113 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---T------TT---------CEEEEEES------SSCHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEEC------CCCHHHHHH
Confidence 445555689999999999999999999888774211 0 01 11233321 123222211
Q ss_pred HHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 001154 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1136)
Q Consensus 925 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~ 1004 (1136)
+.......+.+..+.+ + ...||.++++|+..|...+.++++++.|+|... .
T Consensus 114 ------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~ 164 (315)
T 3bh0_A 114 ------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----V 164 (315)
T ss_dssp ------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----H
T ss_pred ------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----H
Confidence 1111111111111111 0 012899999999999999999999999998744 2
Q ss_pred HHHHHHHHHHHhC-CCE--EEEEec
Q 001154 1005 AIVMRTVRNIVNT-GRT--IVCTIH 1026 (1136)
Q Consensus 1005 ~~i~~~l~~l~~~-g~t--ii~~~H 1026 (1136)
..+...++++.++ |.. +|++-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3456666666543 667 888876
No 359
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.15 E-value=0.00011 Score=76.79 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=35.4
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEE--EEcCccC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI--YISGYPK 895 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 895 (1136)
.+++..++|++++|+||||||||||+++|++... ..|.+ +++|.++
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 4444557899999999999999999999998643 13555 7887543
No 360
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.0002 Score=72.70 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.|++++|+||||||||||+++|++.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999874
No 361
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.13 E-value=0.00012 Score=88.14 Aligned_cols=42 Identities=33% Similarity=0.372 Sum_probs=35.6
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee-EEE-ECCcc
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KIT-YNGHG 201 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~-~~G~~ 201 (1136)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999764 54 674 77743
No 362
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.12 E-value=0.0022 Score=73.01 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=29.6
Q ss_pred eeecee-EEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344433 57999999999999999999999999875
No 363
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.12 E-value=0.0024 Score=72.08 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=29.9
Q ss_pred eeecee-EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 679999999999999999999999998753
No 364
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.12 E-value=0.00014 Score=76.59 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=25.8
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
No 365
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.08 E-value=0.00028 Score=83.19 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 323 GPARVLFMDEISNGLDS-STTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
.++++||+||+..-.+. .+...+...+..+.. .+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHH
Confidence 38899999999887764 567778888877653 345556555444443
No 366
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.07 E-value=0.0001 Score=91.48 Aligned_cols=46 Identities=30% Similarity=0.292 Sum_probs=34.0
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccC
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~ 202 (1136)
|+.+++|+.++|+|++|+|||||++.|++..... ...|+| .+|...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccc
Confidence 3457789999999999999999999999876542 236777 555444
No 367
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.06 E-value=0.0036 Score=72.00 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.++|.||+|+|||||++.+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998764
No 368
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.05 E-value=0.00089 Score=74.72 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=40.4
Q ss_pred CChhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHhccCC-eEEEEEecChhHHHhhcCeE
Q 001154 307 ISGGQKKRLTTGELLV--GPARVLFMDEISNGLDSST-TYQIIKYLKHSTRALDG-TTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 307 LSGGqkkRvsia~al~--~~p~vlllDEptsgLD~~t-~~~i~~~l~~~~~~~~~-t~ii~~~q~~~~~~~~~D~v 378 (1136)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 5566666 78999998 7888876 56677777777654432 23333333344444444443
No 369
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.05 E-value=0.00069 Score=77.69 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=27.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 370
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00033 Score=69.62 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=25.1
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44455555 99999999999999999998544
No 371
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.98 E-value=5.9e-05 Score=86.68 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=78.9
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCC-CCCCcHHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH-SPGLTVLE 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~-~~~ltv~e 921 (1136)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+. ..+...+|+++|..++ +...+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999843 35554412111 1112235677776532 22222111
Q ss_pred HHHHHhhhc-CCCcccHHHHHHHHHHHHHH---cCCCc-cc---ccccc----CCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 922 SLLFSAWLR-LPSEIELETQRAFVEEVMEL---VELTS-LS---GALIG----LPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 922 ~l~~~~~lr-~~~~~~~~~~~~~v~~~l~~---l~l~~-~~---~~~~~----~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
.+ .+ .... ........+...++- +.+.. .. +.+.. ......+++|+++|+..+++++..|++
T Consensus 230 ~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 230 GE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 10 01 0000 000001122233320 00110 00 11000 011245889999999988888889998
Q ss_pred EE-EeCCCC
Q 001154 990 VF-MDEPTS 997 (1136)
Q Consensus 990 ll-LDEPTs 997 (1136)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999987
No 372
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.92 E-value=0.00027 Score=70.21 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=23.1
Q ss_pred eEEEEECCcEEEEEccCCCChhHHHhccc
Q 001154 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455555 89999999999999999986
No 373
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.89 E-value=0.0003 Score=73.83 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999999864
No 374
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.89 E-value=0.00047 Score=81.26 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=47.4
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEE-EecCcEEEEeCCCC
Q 001154 985 ANPSIVFMDEPTSGLDA-RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF-MKRGGELIYAGPLG 1055 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~-l~~gG~~~~~g~~~ 1055 (1136)
.+|++||+||+..-.+. .++..+...+..+.+.|+.||+++|.+..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888999888778999999999854321111122111 22 35666667664
No 375
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.87 E-value=0.00031 Score=73.06 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.6
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999854
No 376
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.84 E-value=0.0042 Score=69.16 Aligned_cols=28 Identities=43% Similarity=0.520 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999998754
No 377
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.81 E-value=0.00016 Score=75.67 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=30.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1136)
++|++++|+|+||||||||+++|++... ...|.+.+.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEecc
Confidence 5789999999999999999999998543 12355555443
No 378
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.80 E-value=0.00026 Score=81.44 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999874
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.00064 Score=72.72 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=27.3
Q ss_pred eeeceeEEEe---CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 150 ILDDLSGIIR---PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 150 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-|.++++.+. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3677777776 999999999999999999999999885
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.77 E-value=0.00022 Score=81.20 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=38.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
.+++++++.+++|.+++|+|+||||||||++.|+|.+.+. .|+|.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEE
Confidence 4677888888999999999999999999999999987543 454543
No 381
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.76 E-value=0.0015 Score=76.15 Aligned_cols=25 Identities=44% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
No 382
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.76 E-value=0.00042 Score=70.47 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=29.5
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
.+|++++|+|+|||||||++++|++.. |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998742 556677643
No 383
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.74 E-value=0.00048 Score=78.56 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=31.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEee
Confidence 467899999999999999999999987553 566665543
No 384
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.74 E-value=0.00025 Score=75.42 Aligned_cols=37 Identities=38% Similarity=0.444 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
+.+++|+|||||||||+.+.|++.++-....+|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999987533334677765
No 385
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.67 E-value=0.011 Score=69.50 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=33.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44677777789999999999999999999999888654
No 386
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.67 E-value=0.0028 Score=73.91 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++.+++++||+||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999998854
No 387
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.65 E-value=0.00047 Score=83.50 Aligned_cols=46 Identities=30% Similarity=0.516 Sum_probs=38.0
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G 199 (1136)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 556666666 89999999999999999999999998653 67776555
No 388
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.65 E-value=0.00047 Score=69.85 Aligned_cols=26 Identities=38% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 389
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.62 E-value=5e-05 Score=85.27 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=27.7
Q ss_pred EEeeeEEEEECCc------EEEEEccCCCChhHHHhcccCCC
Q 001154 844 LLVNVTGAFRPGV------LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.|++++..+..++ ++||+||||||||||+++|.+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444444 89999999999999999999854
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.62 E-value=0.00093 Score=84.68 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=26.7
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
.+++|+.+.|+||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999999998653
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.00066 Score=71.47 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=32.9
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee--EEEECCc
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG--KITYNGH 200 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G--~I~~~G~ 200 (1136)
+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5678999999999999999999999988632 56 6666653
No 392
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.53 E-value=0.0015 Score=72.93 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.5
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++++..+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3577889999999999999999999753
No 393
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.52 E-value=0.00025 Score=85.51 Aligned_cols=41 Identities=37% Similarity=0.498 Sum_probs=32.5
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-EEE-EcCcc
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIY-ISGYP 894 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 894 (1136)
+++|++++|+|+||||||||+++|+|...+ ..| .+. ++|..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 468999999999999999999999997542 233 564 77753
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.51 E-value=0.0013 Score=67.08 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999874
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.50 E-value=0.0018 Score=65.53 Aligned_cols=27 Identities=37% Similarity=0.697 Sum_probs=23.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 396
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0014 Score=75.19 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999998764
No 397
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.42 E-value=0.0024 Score=64.60 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999864
No 398
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.40 E-value=0.0016 Score=68.18 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.9
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455554 99999999999999999997544
No 399
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.38 E-value=0.0026 Score=74.98 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC---------CcceeeEEEECCccCC---CCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH---------HLQVSGKITYNGHGFK---EFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~---------~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
-.++|+|+||+|||||++.|+|.... ....+|.+.++|.++. ....++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999997431 0134799999997542 11122333444344333444444555
Q ss_pred HHH
Q 001154 230 LDF 232 (1136)
Q Consensus 230 l~f 232 (1136)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 400
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.37 E-value=0.0014 Score=68.45 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=26.3
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999998763
No 401
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.35 E-value=0.0022 Score=65.42 Aligned_cols=40 Identities=30% Similarity=0.218 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCcc
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~ 201 (1136)
.+++|+|++|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865422234777776644
No 402
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0017 Score=66.79 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=26.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888999999999999999999999876
No 403
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.30 E-value=0.0013 Score=68.99 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=22.8
Q ss_pred eEEEEECCcEEEEEccCCCChhHHHhccc
Q 001154 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34455555 99999999999999999884
No 404
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.29 E-value=0.0017 Score=76.55 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEec
Q 001154 968 GLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDA----------RAAAIVMRTVRNIVNT-GRTIVCTIH 1026 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgLD~----------~~~~~i~~~l~~l~~~-g~tii~~~H 1026 (1136)
++|..+- .+.++.+. .+|+++++|..+.-.+. .....+.+.|+.++++ +++||+++|
T Consensus 292 ~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 292 DLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp TCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 5677664 34566665 47999999998754322 1234677778888764 999999998
No 405
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.28 E-value=0.018 Score=61.56 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=29.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 001154 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVCTIH 1026 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H 1026 (1136)
.+|+++++..+.+.++......+..+++.+.. ...+||+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999998888888666655555543321 1358888888
No 406
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.25 E-value=0.0016 Score=69.80 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.|.-.+.. ...+.+-+++++||.-. ++|......+++.+...... -.+++++.+.+.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcCC
Confidence 34444432 33578899999999976 68877665555544433221 124444555555555455543
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.25 E-value=0.0027 Score=65.39 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678888888777 7899999999999999999873
No 408
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.24 E-value=0.00058 Score=73.26 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.9
Q ss_pred ECCcEEEEEccCCCChhHHHhccc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
..|+.++++|||||||||++..+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 468899999999999999887665
No 409
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.24 E-value=0.0033 Score=73.11 Aligned_cols=44 Identities=23% Similarity=0.040 Sum_probs=37.0
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 577877 89999999999999999999999998754 567766543
No 410
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.22 E-value=0.0029 Score=65.15 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=20.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988887 5689999999999999999874
No 411
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.22 E-value=0.054 Score=61.58 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
No 412
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.21 E-value=0.028 Score=60.05 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999998643
No 413
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.20 E-value=0.002 Score=66.16 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=26.7
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.++|.+++|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999998753
No 414
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.16 E-value=0.012 Score=66.09 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=24.9
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987764
No 415
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.15 E-value=0.00082 Score=75.79 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=31.6
Q ss_pred eeeceeEEEeCCeE--EEEEcCCCCChhHHHHHHHhhhC
Q 001154 150 ILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 150 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++.++..+++|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 55666666778877 99999999999999999999874
No 416
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.13 E-value=0.015 Score=63.77 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+.++.-++|.||||+|||||+++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999875
No 417
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.06 E-value=0.0039 Score=69.23 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=35.4
Q ss_pred ec-eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECC
Q 001154 152 DD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1136)
Q Consensus 152 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G 199 (1136)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777776 9999999999999999999999988643 45665543
No 418
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.04 E-value=0.011 Score=66.48 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++.-++|.||+|+|||||+++|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 346789999999999999999998763
No 419
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.03 E-value=0.00025 Score=80.68 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.6
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
..+++++++.+.+|.+++|+|++|||||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566777778899999999999999999999998753
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.02 E-value=0.0019 Score=68.95 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=25.8
Q ss_pred EeeeEEEEE---CCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 845 LVNVTGAFR---PGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 845 L~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
|.++++.+. +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345555555 899999999999999999999997543
No 421
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.00 E-value=0.0038 Score=73.47 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=37.4
Q ss_pred EEEEEccCCCChhHHHhcccCCCC------C----ceeEEEEEEcCccCC---hhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKT------G----GIIEGDIYISGYPKR---QETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~------~----~~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.++|+|+||+|||||++.|+|... + .+..|.+.++|.+.. ..-.++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 689999999999999999999642 1 134688889987431 111223333443443344444455555
Q ss_pred H
Q 001154 924 L 924 (1136)
Q Consensus 924 ~ 924 (1136)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
No 422
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.99 E-value=0.0009 Score=75.81 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=30.1
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
|+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 78899999999999999999999999999874
No 423
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.98 E-value=0.002 Score=69.82 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
..+++.+++|+|+|||||||+.+.|+..++ .|.+.++|-
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecH
Confidence 456788999999999999999999998874 234556653
No 424
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.95 E-value=0.0011 Score=75.67 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=28.9
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1136)
+++.+++|+|++|||||||++.|+|.... ..|.|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 35789999999999999999999985321 1345555443
No 425
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.92 E-value=0.0074 Score=66.32 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.7
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++.-+.|.||+|+|||||.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568999999999999999998743
No 426
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.91 E-value=0.0025 Score=65.03 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=24.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999753
No 427
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.91 E-value=0.0014 Score=68.01 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=29.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
.+++++|+..++++ ++|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 47788888888875 68999999999999999976
No 428
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.90 E-value=0.00037 Score=79.88 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=27.1
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 344566777776 999999999999999998753
No 429
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.89 E-value=0.014 Score=66.57 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887774
No 430
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.88 E-value=0.0036 Score=65.19 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 431
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.86 E-value=0.0041 Score=63.57 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998765
No 432
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.86 E-value=0.0026 Score=67.44 Aligned_cols=57 Identities=23% Similarity=0.160 Sum_probs=38.4
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCC-CceeEEEEEE--------cCccCCh----hcccceEEEeccCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYI--------SGYPKRQ----ETFARISGYCEQND 911 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~~ 911 (1136)
+.+++|+|++||||||+.++|++... .-+..|++.. +|.++.. ..+++.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997431 1134577665 5654431 12345567777753
No 433
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.82 E-value=0.0068 Score=68.14 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=34.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 001154 984 VANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028 (1136)
Q Consensus 984 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 1028 (1136)
..+|.+||+||+.. .-+..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344677888888888777777788887754
No 434
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.81 E-value=0.0041 Score=71.44 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.1
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3446678889999999999999999999985
No 435
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.77 E-value=0.0046 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+.+.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 436
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.76 E-value=0.0028 Score=66.16 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=24.2
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+|.+++|+||||||||||.+.|+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 578899999999999999999998643
No 437
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.73 E-value=0.0053 Score=62.24 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
|.++.|.|+|||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 438
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.72 E-value=0.0044 Score=64.51 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 439
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.71 E-value=0.0013 Score=79.53 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=37.6
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 3455666666 899999999999999999999998653 346777777643
No 440
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.68 E-value=0.0033 Score=71.25 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=31.6
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 441
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.64 E-value=0.0033 Score=64.57 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=25.8
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56777788999999999999999999999864
No 442
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.61 E-value=0.0045 Score=67.05 Aligned_cols=35 Identities=40% Similarity=0.658 Sum_probs=25.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666655 89999999999999999999874
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.59 E-value=0.0084 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 444
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.57 E-value=0.0091 Score=70.20 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=26.8
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 334444578999999999999999999877764
No 445
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.54 E-value=0.057 Score=57.07 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=38.2
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe---------cChhHHHhhcCeEEEEc
Q 001154 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~ 382 (1136)
.+++++++||.-. |+.. +++.++.++.. +..+|++=+ .+++++..++|.|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999965 6643 45555666653 555555544 46788899999999875
No 446
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.52 E-value=0.00098 Score=76.39 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=26.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 4678888876 99999999999999999875
No 447
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.52 E-value=0.0065 Score=64.82 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-+++|.||+||||||+.+.|+..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
No 448
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.002 Score=73.05 Aligned_cols=39 Identities=28% Similarity=0.580 Sum_probs=33.5
Q ss_pred eeeeceeEEEeCCeE--EEEEcCCCCChhHHHHHHHhhhCC
Q 001154 149 TILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 466777777888888 999999999999999999998753
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.50 E-value=0.0069 Score=64.81 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-.+|.+++|+|++||||||+.+.|++.++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999998763
No 450
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.47 E-value=0.039 Score=62.92 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+..-+.|.||+|+|||||.++|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4456889999999999999999864
No 451
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.47 E-value=0.099 Score=59.51 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++..-++|.||+|+|||||.++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999865
No 452
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.45 E-value=0.015 Score=61.67 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcHHHHHhcCEEEEEe
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH---------QPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~~~~~~d~~~~l~ 1043 (1136)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|.+.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45566777777999999999 55567888999998864
No 453
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.43 E-value=0.01 Score=60.31 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 454
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.42 E-value=0.0045 Score=64.46 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 455
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.42 E-value=0.0019 Score=66.99 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=27.6
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 455666666666 5799999999999999999874
No 456
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.42 E-value=0.0072 Score=62.04 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
No 457
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.37 E-value=0.015 Score=66.43 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
No 458
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.34 E-value=0.0083 Score=65.00 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++|+||||||||||.+.|++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 459
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.34 E-value=0.0074 Score=60.35 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 460
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.24 E-value=0.0099 Score=66.13 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++++.-++|.||||+|||||+++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356888999999999999999999998763
No 461
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.23 E-value=0.011 Score=65.30 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..+.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998765
No 462
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.22 E-value=0.06 Score=61.29 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++..-++|.||+|+|||||.++++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999876
No 463
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.22 E-value=0.0094 Score=60.95 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
|.+++|.|++||||||+.+.|+-.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998764
No 464
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.19 E-value=0.01 Score=60.63 Aligned_cols=27 Identities=26% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++..++|+|++||||||+.+.|+..++
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999997763
No 465
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.11 E-value=0.0033 Score=66.02 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=29.6
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEE--EEEEcC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--DIYISG 892 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 892 (1136)
++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 5789999999999999999999997543 1234 566664
No 466
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.09 E-value=0.012 Score=61.23 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987753
No 467
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.05 E-value=0.011 Score=59.94 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++|+|+|||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 468
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.04 E-value=0.0083 Score=61.04 Aligned_cols=38 Identities=37% Similarity=0.338 Sum_probs=27.8
Q ss_pred cEEEEEccCCCChhHHHhcccCCCC-CceeEEEEEEcCc
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGY 893 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 893 (1136)
.+++|+|+||||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987422 1223466666543
No 469
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.02 E-value=0.012 Score=60.97 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998774
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.94 E-value=0.036 Score=65.13 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=32.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
...-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 345677777779999999999999999999988887543
No 471
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.92 E-value=0.012 Score=60.94 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999765
No 472
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.92 E-value=0.012 Score=59.78 Aligned_cols=27 Identities=41% Similarity=0.366 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..+..++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998665
No 473
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.85 E-value=0.013 Score=60.19 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 474
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.85 E-value=0.016 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999988743
No 475
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.84 E-value=0.007 Score=69.55 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=31.8
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCC---------CceeEEEEEEcCc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------GGIIEGDIYISGY 893 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 893 (1136)
.+..|..++|+|++|+|||||++.|+|... -.+..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 446788999999999999999999998621 1244677777653
No 476
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.83 E-value=0.012 Score=60.47 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999986653
No 477
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.79 E-value=0.0077 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCChhHHHhcccCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 478
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.78 E-value=0.014 Score=59.42 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 479
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.77 E-value=0.0091 Score=61.14 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=24.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+|.++.|+|++||||||+.+.|++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998753
No 480
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.75 E-value=0.3 Score=58.30 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=31.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 44566666679999999999999999999988887544
No 481
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.75 E-value=0.011 Score=75.00 Aligned_cols=31 Identities=42% Similarity=0.638 Sum_probs=28.2
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.+++|+-++|.||||||||||+++|+|.++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999999999874
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.73 E-value=0.012 Score=60.02 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 483
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.73 E-value=0.014 Score=58.53 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLAL 181 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L 181 (1136)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 484
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.72 E-value=0.016 Score=60.98 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|..++|+|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998766
No 485
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.70 E-value=0.012 Score=60.06 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 486
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.69 E-value=0.016 Score=58.61 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG 183 (1136)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 487
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.68 E-value=0.048 Score=73.16 Aligned_cols=30 Identities=37% Similarity=0.456 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987653
No 488
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.67 E-value=0.0068 Score=62.56 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998766
No 489
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.64 E-value=0.011 Score=60.38 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.2
Q ss_pred ECCcEEEEEccCCCChhHHHhcccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 490
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.64 E-value=0.016 Score=60.35 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|.+++|.|++||||||+.+.|+-.+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987653
No 491
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.60 E-value=0.17 Score=56.72 Aligned_cols=118 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC-CCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
.|..-+.|.||.|+|||||.+.++... . ..-+.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~-------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSS-------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECC--------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhH--------------------------------------
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-------CCCCCHHHH
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-------TSGLDARAA 1004 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-------TsgLD~~~~ 1004 (1136)
++.....+ ...+.-+-.+..+-..+|.|||+||. ..+......
T Consensus 81 -----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 81 -----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp -----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred -----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Q ss_pred HHHHHHHHHH-----HhCCCEEEEEecCC---cHHHHHhcCEEEEE
Q 001154 1005 AIVMRTVRNI-----VNTGRTIVCTIHQP---SIDIFESFDELLFM 1042 (1136)
Q Consensus 1005 ~~i~~~l~~l-----~~~g~tii~~~H~~---~~~~~~~~d~~~~l 1042 (1136)
+.+.+.+..+ ...+..||.+|..| +..+...||+.+.+
T Consensus 131 ~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
No 492
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.57 E-value=0.0021 Score=72.50 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=29.1
Q ss_pred EEeeeEEEEECCcE--EEEEccCCCChhHHHhcccCC
Q 001154 844 LLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44556666678887 999999999999999999974
No 493
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.56 E-value=0.02 Score=58.64 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998665
No 494
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.51 E-value=0.019 Score=60.30 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 495
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.51 E-value=0.016 Score=58.94 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++.++.|.|++||||||+.+.|+-.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
No 496
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.48 E-value=0.092 Score=54.10 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe---------cChhHHHhhcCeEEEEc
Q 001154 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~ 382 (1136)
.+.+++++||.-- +|+. +++.++.++.. +..+|++-+ .+++++.+++|.|.-|.
T Consensus 80 ~~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 6644 25566666654 566666655 67789999999998875
No 497
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.45 E-value=0.21 Score=56.91 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
+++|+++.|.|++|+|||||...++.... .....+.|+.-+....+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~------------------~~g~~vlyi~~E~s~~~---------------- 116 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ------------------KAGGTCAFIDAEHALDP---------------- 116 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH------------------HTTCCEEEEESSCCCCH----------------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH------------------HCCCeEEEEECCCChhH----------------
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC----------
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGL---------- 999 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgL---------- 999 (1136)
...+.+++..-.-.... .-+. .+.+.+++.++ .+++++++|..++=.
T Consensus 117 --------------~~a~~~g~d~~~l~i~~-----~~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 117 --------------VYARALGVNTDELLVSQ-----PDNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp --------------HHHHHTTCCGGGCEEEC-----CSSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred --------------HHHHHcCCCHHHceeec-----CCcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 001154 1000 DA---RAAAIVMRTVRNI----VNTGRTIVCTIH 1026 (1136)
Q Consensus 1000 D~---~~~~~i~~~l~~l----~~~g~tii~~~H 1026 (1136)
|. ...+.+.+.+++| .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 498
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.44 E-value=0.019 Score=59.98 Aligned_cols=29 Identities=31% Similarity=0.305 Sum_probs=25.0
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++|.+++|.|++||||||+.+.|+-.+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997653
No 499
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.39 E-value=0.0095 Score=62.29 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998875
No 500
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.38 E-value=0.02 Score=58.52 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
Done!